BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|255764468|ref|YP_003064806.2| permease protein [Candidatus
Liberibacter asiaticus str. psy62]
         (361 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|288962055|ref|YP_003452365.1| predicted permease [Azospirillum sp. B510]
 gi|288914335|dbj|BAI75821.1| predicted permease [Azospirillum sp. B510]
          Length = 385

 Score =  177 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 138/363 (38%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R +  + L S   +    W+ Q L+ I +V S+   + + L +    +PT 
Sbjct: 1   MNRLQRYLFRNLLIATLYSTAGLTLTIWLSQSLRLIEIVVSAGAPMGMFLWLLLLTVPTF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P             M  ++EL+++   G    +L  P L LA+ +   + +    
Sbjct: 61  LGVVLPLALVGAILFTYNKMTTDSELVVMRAAGVGPFSLSTPALVLAVAVMAIVLVLNVW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     + ++    +   +  +L E +F  + D   + +   + +  L  + I D R 
Sbjct: 121 ITPAAHRELVRMEYAVRSDYSQLFLREGVFNEVGDRFSVFLRDRDSDGNLHKVLIHDGRQ 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
                        +    D    ++ DG        +  +S + F+ Y +  +  +  ++
Sbjct: 181 PDKPVTIMGDRALMQTGADGTRFVVYDGNRQELDRKTNRLSQLFFERYAVDLKAVAPQAA 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                A +++   L++   N P     +     +E H R +  L  + F L+++ A    
Sbjct: 241 DRWPDARERSTEDLMSG--NVPAQDDRMRRGLIAELHHRFSSPLLALTFALVALSALLSG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R+  +   + I++ +  G+  G   +     +   ++P++Y          L ++ +
Sbjct: 299 EFNRRG-QSSRVTIAVLLVMGLQAGALGLTSLAGKATVFVPLMYAMPVVALLPALWVMSR 357

Query: 357 KYT 359
             +
Sbjct: 358 GLS 360


>gi|170746990|ref|YP_001753250.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653512|gb|ACB22567.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 386

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/358 (22%), Positives = 169/358 (47%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E YI R    + L   + +    W+ Q L+ ++LV++  ++L + L ++G  +PT+
Sbjct: 1   MRQIERYIFRIALGATLACLIGLTGTIWLTQALRELDLVTAKGQTLLVFLFVTGLSLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    + T   L  +N ++EL+++   G    +L++P L LA+ +S  +     +
Sbjct: 61  VVVIAPVALFIGTIYALNKLNGDSELIVMSAAGMPPRSLLRPFLTLALFVSFLVGFLVVV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ +  + +     + ++E  F +LD+ +     +  P  TL+G+FI D R+
Sbjct: 121 VMPASFQELRDVITRVRGDFIANVVKEGQFTQLDNGITFHFRERGPGGTLKGLFIQDRRE 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
               K+Y A+ G+      +  +IL +G VH++   S+D SI+ F+ YT+     +   S
Sbjct: 181 AGKTKVYLAERGNAVDVDGQSYLILENGSVHQQQRESRDSSILTFERYTIDLAAFAPPDS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + K  +++ + LL P+     Y+ +    +R+E H RL+  L+P+    I+  A    
Sbjct: 241 DTIYKPRERSTAQLLFPDTTEGYYKLQ-KGRFRAELHDRLSACLYPLALVFIAFAALGDP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ + +     ++     +  G    +    ++P  +  +Y        +  L+I
Sbjct: 300 RTTRQGRGVAIAG-AIVAVVALRIGGFAAVSAAARSPAAVLAVYSVPLVAILLSSLLI 356


>gi|118590094|ref|ZP_01547497.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
 gi|118437066|gb|EAV43704.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
          Length = 395

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 81/360 (22%), Positives = 174/360 (48%), Gaps = 6/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ E YI+R    +F ++   +  + W  Q L++++LV+S  +++   + I+   +P +
Sbjct: 1   MKTIERYIIRRTVYAFTLTIAAMTGVVWATQALRQLDLVTSKGQTIVQFIGITMLALPFL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +    VL S++ ++EL++ID +G SR  ++KPV+  ++++ +        
Sbjct: 61  IVIVAPFALMIALILVLNSLSGDSELIVIDASGGSRFLVLKPVMLFSLVVMLLTASMSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + ++    + +  L  + ++   F  ++D L   I   +   TL G+ + D+RD
Sbjct: 121 VAPAGLAQLRTEITRVRADLVANIVKPGRFITVEDGLTFHIRNRSGKGTLDGLLMHDTRD 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +T   Y A +G I    DR  +++ +G + R+     DISI++F+SY     +    + 
Sbjct: 181 PETAFTYQADTGQIVEAADRTLLVMQNGTIQRRPKQQGDISIVRFQSYAFDLSNLIPEAG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V KA++++   L++P  ++  Y  +  +    E H+R +Q L+ + FGLI      K 
Sbjct: 241 EPVYKASERSTLNLMSPGRHD-EYALKNPDKLVQELHERFSQPLYCLAFGLIVFAFLGKA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +    +  ++     +      +      +   + +LY+     + + L+ I +
Sbjct: 300 RTTRQGRGFAVLG-AICSCVLLRTTGFGVTAISGTSTVLLSLLYVVPITGAVLALISIFR 358


>gi|209964866|ref|YP_002297781.1| predicted permease YjgP [Rhodospirillum centenum SW]
 gi|209958332|gb|ACI98968.1| predicted permease YjgP [Rhodospirillum centenum SW]
          Length = 372

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 140/360 (38%), Gaps = 7/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+LR +  + +     +    W+ Q L+ + +V     SL I  +++    PT 
Sbjct: 1   MNQIDRYLLRNLAVATVFVTAGLSAAIWLTQSLRLVEMVVEGGASLGIFFRLALLTFPTF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P             +  ++EL+++   G S + L +P L LA ++++  +     
Sbjct: 61  LSLILPVGLLAAVLFTYNRLIMDSELVVMRAAGLSPMALARPALILAAVVALLCYTLTLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P  +  + +L    +  ++   L E  F  +   L + + +      L G+ I D R 
Sbjct: 121 AGPAAQRELVRLRQAVRSDVSAVLLREGTFNDVGTGLTVYVRERGREGALSGLLIHDLRS 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
                   A+ G +    D   +++ +G   +          ++F  YT+  ++      
Sbjct: 181 PGVATTVVAERGRLVEVDDVPHVVVFNGTQIKFHQDDGRTEWLEFARYTVDLQALRKELG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              ++  +++L  L+N    +     +     R+E H RL   L P+ F  + + A    
Sbjct: 241 PRWIEPRERSLRDLVNLT--DDPLDRQFFGRLRAELHSRLATPLLPLAFTAVGLAALLPG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R+ +       ++  +  +      I + + +NP   P+LY  +   ++  L  + +
Sbjct: 299 EFSRRGQGRRIALAAVG-ALVLQSAVLGISNLVGKNPALTPLLYGAVLLPAAAALWYMVR 357


>gi|298291096|ref|YP_003693035.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
 gi|296927607|gb|ADH88416.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
          Length = 385

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 76/362 (20%), Positives = 164/362 (45%), Gaps = 6/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R    +FL + L +  + W+ Q L+ ++++++  +++   + I+   +P +
Sbjct: 1   MNRLDRYVFRSAASAFLGTLLVLTLMIWITQALRELDIMTTQGQTILAFVFITSLALPAL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    M     L  MN ++E+++    G S    ++P++ LA++++    +    
Sbjct: 61  ILGLAPAALFMAVAYTLFRMNSDSEIVVSSAAGISTWRFLRPLVILALIVAACCSVLSLE 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   ++ +  +     +   F  L D +   + + N N  L GIFI D+RD
Sbjct: 121 LVPAAMRQFRYEISRVRADVVAFIAQPGRFTTLADGMVFHVRERNANGVLGGIFINDARD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--S 236
            +    Y A+ G +  + D   +IL +G +HR++P   D ++++F+ Y        S   
Sbjct: 181 PKQTNTYLAERGQVVDNKDGTFLILEEGAIHRRTPGKPDSNVVEFQRYAFDLSPFTSNGE 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V +A +++   LLNP+P +  Y       +  E H+RL+  L+ + F  I+  A  + 
Sbjct: 241 NAVYRAPERSFRELLNPDPKDYVY-ILESGRFTEELHRRLSLPLYVLAFFGIACAALAEP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R+ + +  +  +      +      +I++I  NP  IP +YL          L +  
Sbjct: 300 RTTREGRGLA-LAATTPFVIVLQVTSFGLINQIRGNPSVIPFVYLVPAVFIVGSALSLSG 358

Query: 357 KY 358
           ++
Sbjct: 359 RF 360


>gi|222148153|ref|YP_002549110.1| hypothetical protein Avi_1543 [Agrobacterium vitis S4]
 gi|221735141|gb|ACM36104.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 399

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 121/359 (33%), Positives = 210/359 (58%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR + + FL + L ++ I W  Q+L RINLV+ + +S+     ++  ++PT+
Sbjct: 6   MKLLESYILRRVAQMFLTALLPVLAIIWTTQVLARINLVTDTGQSIGSFATLATLILPTI 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G SR  +++P+L  A+ +S+   +  N 
Sbjct: 66  IPIVMPFALVIGITQSLTAMNNDSELAVIDAAGASRAVILRPILLFALAISVITLVITNE 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++PK +   +Q+ A A   L  + +EE  F +++D LY++IS+      L+G+F+ D RD
Sbjct: 126 VQPKVKVAARQMIANAYADLLSTVIEEKTFRKVEDGLYVQISQRLAGRVLKGLFVADYRD 185

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--TI 238
                IYYA+ G++D    A+I++DGEV RK+P    +SI++F SY         +    
Sbjct: 186 PAYSLIYYAREGAVDETGTALIMHDGEVQRKAPGGT-VSIVRFDSYAFDLSDLTETRGKA 244

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            ++ +D++LSFLLNP+ N+ +Y+ +    YR+E HKR+T+WL P  F LIS+  A     
Sbjct: 245 KMRPSDRSLSFLLNPDTNDDDYK-DHPGEYRAELHKRMTEWLLPFAFALISLAIAGDAR- 302

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             +  ++HP+  +L+++  + W   Y  +K E N  +I ++Y      ++I  LM+ ++
Sbjct: 303 SHREARLHPMVSALTLALVLRWLTFYAANKSESNAAFIVLMYATPLASAAIATLMLMRQ 361


>gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62]
 gi|254547819|gb|ACT56866.2| permease protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 361

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 361/361 (100%), Positives = 361/361 (100%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV
Sbjct: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI
Sbjct: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD
Sbjct: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL
Sbjct: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR
Sbjct: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK
Sbjct: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360

Query: 361 I 361
           I
Sbjct: 361 I 361


>gi|150395989|ref|YP_001326456.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
 gi|150027504|gb|ABR59621.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
          Length = 390

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 117/353 (33%), Positives = 207/353 (58%), Gaps = 5/353 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R     FL + L ++ I W  Q L  +NLV+ S +S+   LK++  ++P+V
Sbjct: 1   MKLIERYIFRRATIMFLATLLPLMGIVWTTQALANVNLVTDSGQSIIAFLKLATLILPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ PF   +  T  L++MN ++EL ++   G+SR+++I+PV+FLA  LS+  F  +N 
Sbjct: 61  VPIILPFALVIGVTQTLSAMNTDSELTVLSAAGSSRMSIIRPVMFLAAGLSVLSFTIDNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R +++++ A A   L  S ++EN F ++ D LY+++        L GIF+ D+RD
Sbjct: 121 VEPYSRVSVRKMIATAHADLLASVVQENAFRKITDGLYVQVGARRSGGVLHGIFVADARD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST--I 238
                +YYA+ G++D  R A+++ DGEVHRK P   D+SI+KF SY          T   
Sbjct: 181 PNFELVYYAREGAVDEGRSALVMKDGEVHRKLPDG-DVSIIKFDSYAFDLTDLTRMTGEA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            ++A D++L +LL+P+P++  Y+      + +E H+R T+W FP++FGLI++VA+     
Sbjct: 240 NIRAKDRDLFYLLDPDPDDEAYK-RAPRAFAAELHRRFTEWTFPLLFGLIALVASSDAR- 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             +  ++HP+  +L  +  + W   Y  +  E + +++P++YL      ++ +
Sbjct: 298 SHREARVHPMVSALGAALVIRWMTFYAANSAEDSVWFVPLMYLIPLATGALAI 350


>gi|307946743|ref|ZP_07662078.1| permease YjgP/YjgQ family protein [Roseibium sp. TrichSKD4]
 gi|307770407|gb|EFO29633.1| permease YjgP/YjgQ family protein [Roseibium sp. TrichSKD4]
          Length = 395

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 86/359 (23%), Positives = 169/359 (47%), Gaps = 6/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ E YI +     F M+   +  + W  Q L++++LV+S  +++   + I+   +P +
Sbjct: 1   MKTLERYIFKRAIGVFFMAMAAMAGVVWSTQALRQLDLVTSKGQTIVQFIGITMLALPFL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V PF   +    VL +++ ++EL++ID TG SR  ++KPVL     ++         
Sbjct: 61  LVIVAPFALMIALVLVLNALSGDSELIVIDATGGSRFLVLKPVLIFTAAVTALTATLSIY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +++   + +  L  + ++   F  +D  L   I   + N TL G+ + D RD
Sbjct: 121 VAPLGLGELREEITRVRADLVANIVKPGHFINMDAGLTFHIRNRSGNGTLDGLLLHDVRD 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
             T   Y + +G I    DR  +++ +G + RK   + +ISI++F+SY     +    +S
Sbjct: 181 KDTAFTYQSDTGHIVEVADRTLLVMQNGTIQRKPKGAGEISIVRFQSYAFDLSNLIPEAS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V KA++++   LLNP PN+  Y  +  +   +E H+R +Q L+ + F L+      K 
Sbjct: 241 EPVYKASERSTMNLLNPPPNDA-YALQHPDKLLAELHERFSQPLYCLAFALVVFAFLGKA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              RQ + I  +  +++    +      +          + +LY+      ++ +  I 
Sbjct: 300 RTTRQGRGIAILG-AITTCILLRTAGFGVTAIASGFTGLLLLLYVVPIAAMAVSVWSIM 357


>gi|227821476|ref|YP_002825446.1| putative permease protein [Sinorhizobium fredii NGR234]
 gi|227340475|gb|ACP24693.1| putative permease protein [Sinorhizobium fredii NGR234]
          Length = 390

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 112/353 (31%), Positives = 211/353 (59%), Gaps = 5/353 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R     FL + L ++ I W  Q L  +NLV+ S +S+   LK++  ++P+V
Sbjct: 1   MKLIERYIFRRATIMFLATLLPLLGIVWTTQALSNVNLVTDSGQSIFAFLKLATLILPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ PF   +  T  L+ MN ++EL +++  G+SR+++I+PV++LA+ LS+  F+ +N 
Sbjct: 61  VPIILPFALLIGVTQTLSVMNTDSELTVLNAAGSSRMSVIRPVIYLAVGLSVLSFVIDNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++++ A A   L  S ++EN F R+ D LY++++       L GIF+ DSR+
Sbjct: 121 VEPYSRVAVRKMIATAHADLLSSVVQENAFRRITDGLYVQVAARRSGGVLHGIFVADSRN 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTI 238
                +YYA+ G++D +R A+++ DGEVHRK P    +S++KF SY       +  +   
Sbjct: 181 PNFELVYYAREGAVDEERSALVMKDGEVHRKLPDGG-VSVIKFDSYAFDLTDMTRTAGEA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            ++A D++L +L++P+PN+P+Y+      + +E H+RL++W +P++FGLI++V +     
Sbjct: 240 TIRAKDRDLFYLIDPDPNDPSYK-RSPLAFTAELHRRLSEWTYPLLFGLIALVVSSDAR- 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             +  ++HP   ++  +  + W   Y  +  E + +++P++YL      ++ +
Sbjct: 298 SHREARVHPTISAVGAALVIRWMTFYAGNSAEDSIWFVPLMYLVPLMTGALAI 350


>gi|162149095|ref|YP_001603556.1| permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545162|ref|YP_002277391.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787672|emb|CAP57268.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532839|gb|ACI52776.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 398

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 142/354 (40%), Gaps = 6/354 (1%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+LR +  + L +   +  + W+ Q L  ++LV     SL + + ++  L+P+ + +
Sbjct: 21  LDRYVLRQLLVALLATTGGLSALIWLTQSLHFVSLVVERGLSLRVFIGLTSLLVPSFVAV 80

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P    +    V   +  + EL ++   G S   + +  L  A +  +   I    I P
Sbjct: 81  ILPITTFIVVQFVYQRLAGDRELTVMRAAGLSPFFIARAGLLCATISVVSCMILNIWIVP 140

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                 KQ   + +  +    L+E +F  +   + + +   + + TL GI + D R    
Sbjct: 141 LSFHAFKQYEFQIRNRMAAFMLQEGVFTPVSPTMTVYVRSRDRDGTLHGIVVEDDRQPDN 200

Query: 184 HKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN-SSTIVL 240
                AQ G+  +  ++  ++L DG        S  ++++ F   T+   S+        
Sbjct: 201 PSTVLAQRGTMLVVDNQPRVVLYDGSRQEIDRKSGRLNVLTFSRNTIDLTSSRGDQARFR 260

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            A + +L  LL+P+P      P     +  E  +RLT       F ++ +VA  + A  R
Sbjct: 261 DATEMSLHELLHPDPQE--VAPRDRGKFAVEAWRRLTAPFTAFSFAMVGLVAVLRGAFSR 318

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               I P  +++     +      + +   +N   IP++++          LM+
Sbjct: 319 HGNIIRPA-VAILSVVSLLALSLMVQNLASRNTSLIPLMWVEAILPGIACALML 371


>gi|163853056|ref|YP_001641099.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
 gi|218531866|ref|YP_002422682.1| permease YjgP/YjgQ family protein [Methylobacterium
           chloromethanicum CM4]
 gi|254562993|ref|YP_003070088.1| permease [Methylobacterium extorquens DM4]
 gi|163664661|gb|ABY32028.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
 gi|218524169|gb|ACK84754.1| permease YjgP/YjgQ family protein [Methylobacterium
           chloromethanicum CM4]
 gi|254270271|emb|CAX26267.1| putative permease [Methylobacterium extorquens DM4]
          Length = 389

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/358 (21%), Positives = 159/358 (44%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R    +FL   + +    WV Q L+ ++LV++  ++L + L I+   +PT+
Sbjct: 1   MTQIERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAKGQTLLVFLFITALSLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L  +N ++EL+++   G     L++P   LA  +S+ +      
Sbjct: 61  ITVIAPVALFIACVYALNKLNGDSELIVMSAAGMPPRQLLRPFATLAFAISVVVAFLTIQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ +  + +     + ++E  F  LD+ +     +   + +LQG+FI D R+
Sbjct: 121 VMPSSFQELRDVLTRVRGDFVANVVKEGQFTALDNGITFHFRERGADGSLQGLFIQDKRE 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                +Y A+ G +     +  ++L  G +HR+   S+D SI+ ++ Y +     +   S
Sbjct: 181 AGKAVVYLAERGRVSEVDGQTYLVLEKGSIHRQQKDSRDSSIVSYERYAVDLAAFTPPDS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V K  +++   LL P+     YR +    +R+E H RL+ WL+P+    I+  A    
Sbjct: 241 ETVYKPRERSTMALLFPDTGEGYYRLQ-KGRFRAELHDRLSAWLYPLALAFIAFAALGDP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ + +      + +   +            ++P  +  +Y       ++  L+I
Sbjct: 300 RTTRQGRGLAVAGAVVGV-IALRIAGFAASSAAVRSPGAVVAIYAAPLGAIALSCLLI 356


>gi|188583150|ref|YP_001926595.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
 gi|179346648|gb|ACB82060.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
          Length = 389

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 165/378 (43%), Gaps = 19/378 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R    +FL   + +    WV Q L+ ++LV++  ++L + L I+   +PT+
Sbjct: 1   MTQIERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAKGQTLLVFLFITALSLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L  +N ++EL+++   G     L++P + LA+ +S+ +      
Sbjct: 61  ITVIAPVALFIACVYALNKLNGDSELIVMSAAGMPPRQLLRPFVTLALAVSVVVAFLTIQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ +  + +     + ++E  F  LD+ +     +   + +LQG+FI D R+
Sbjct: 121 VMPSSFQELRDVLTRVRGDFVANVVKEGQFTALDNGITFHFRERGADGSLQGLFIQDKRE 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                +Y A+ G +     +  ++L  G +HR+   S+D SI+ ++ Y +     +   +
Sbjct: 181 AGKAVVYLAERGRVSEVDGQTYLVLEKGSIHRQQKDSRDSSIVSYERYAVDLAAFTPPDA 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V K  +++   LL P+     YR +    +R+E H RL+ WL+P+    I+  A    
Sbjct: 241 ETVYKPRERSTLALLFPDTGEGYYRLQ-KGRFRAELHDRLSAWLYPLALAFIAFAALGDP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK- 355
              RQ + +      L +   +            ++P  +  +Y       ++   +I  
Sbjct: 300 RTTRQGRGLAVAGAVLGVV-ALRIAGFAASSAAVRSPGAVAAVYAAPLGAIALSCFIIFG 358

Query: 356 ------------KKYTKI 361
                       +++ ++
Sbjct: 359 GARVRAMNERLGRQWRRL 376


>gi|15964907|ref|NP_385260.1| hypothetical protein SMc00584 [Sinorhizobium meliloti 1021]
 gi|307300977|ref|ZP_07580746.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
 gi|307317712|ref|ZP_07597150.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
 gi|15074086|emb|CAC45733.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
 gi|306896474|gb|EFN27222.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
 gi|306903932|gb|EFN34518.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
          Length = 390

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 117/353 (33%), Positives = 208/353 (58%), Gaps = 5/353 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R     FL + L ++ I W  Q L  +NLV+ S +S+   LK++  ++P+V
Sbjct: 1   MKLIERYIFRRATIMFLATLLPLMGIVWTTQALTNVNLVTDSGQSIIAFLKLATLILPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ PF   +  T  L++MN ++EL ++   G+SR+++I+PV+FLA  LS+  F  +N 
Sbjct: 61  VPIILPFALVIGVTQTLSAMNTDSELTVLSAAGSSRMSIIRPVMFLAAGLSVLSFAIDNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++++ A A   L  S ++EN F ++ D LY+++        LQGIF+ D+RD
Sbjct: 121 VEPYSRVAVRKMIATAHADLLASVVQENAFRKITDGLYVQVGARRSGGVLQGIFVADARD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN--SSTI 238
                +YYA+ G++D +R A+++ DGEVHRK P   D+SI+KF SY          +   
Sbjct: 181 PNFELVYYAREGAVDEERSALVMKDGEVHRKLPDG-DVSIIKFDSYAFDLTDLTRMAGEA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            ++A D++L +LL+P+P++  Y+   L  + +E H+R T+W FP++FGLI++V +     
Sbjct: 240 NIRAKDRDLFYLLDPDPDDEAYKRAPL-AFTAELHRRFTEWTFPLLFGLIALVVSSDAR- 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             +  ++HP+  +L  +  + W   Y  +  E + +++P++YL      ++ +
Sbjct: 298 SHREARVHPMVSALGAALVIRWMTFYAANSAEDSVWFVPLMYLVPLVTGALAI 350


>gi|328544011|ref|YP_004304120.1| permease YjgP/YjgQ [polymorphum gilvum SL003B-26A1]
 gi|326413755|gb|ADZ70818.1| Permease YjgP/YjgQ [Polymorphum gilvum SL003B-26A1]
          Length = 395

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 88/358 (24%), Positives = 171/358 (47%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ E YI+R  G +F+M+   +  + W  Q L++++LV+S  +++   + I+   +P +
Sbjct: 1   MKTLERYIVRRAGIAFVMTLAAMTGVVWATQALRQLDLVTSKGQTIVQFVGITMLAMPFL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +    VL +++ ++EL++I+ +G SR  +++PV+  +  + +        
Sbjct: 61  VLVVAPFALMIALILVLNALSSDSELIVINASGGSRFLVLRPVVLFSAAIMLLSATLSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + ++   A+ ++ L  + +    F  ++D L   I     + +L G+ + D RD
Sbjct: 121 VAPLGLAQLRDEIARVRVDLVANIVRPGRFITVEDGLTFHIRNRRGDGSLDGLLLHDRRD 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            QT   Y A  G I    DR  +++ DG + R+     DISI++F+SY     +    +S
Sbjct: 181 PQTVFTYQADVGRIVEAADRTLLLMQDGTIQRRPKTDGDISIVRFQSYAFDLSALIPETS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T + KA+++    LL    +  +Y  +  +  R+E H RL+Q L+P+ FGLI      + 
Sbjct: 241 TPIYKASERPTLALLLGT-HQDDYARQNADRLRAELHDRLSQPLYPLAFGLIVFAFLGQA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ + +  +  +L    G+      +   I          YL       + L  I
Sbjct: 300 RTTRQGRGMAMLG-ALVACIGLRTAGFGVSTLISGQASLTLGYYLVPLIGIGVALWTI 356


>gi|260427478|ref|ZP_05781457.1| permease YjgP/YjgQ [Citreicella sp. SE45]
 gi|260421970|gb|EEX15221.1| permease YjgP/YjgQ [Citreicella sp. SE45]
          Length = 379

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 132/360 (36%), Gaps = 5/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ F+ Y+L  +   F    L +V + W+ + +   + + ++  +  I L+ +   +P V
Sbjct: 1   MQRFDRYMLSQLMVVFGFFALVLVMVYWLNRSVGLFDELIANGHTAGIFLEFTLLALPGV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P         V   M+  +EL ++  TG S   L +PVL    ++   + I  ++
Sbjct: 61  VAIVLPMAAFGAAVYVTNRMSNESELTVLQATGLSPWRLARPVLVFGAIIGAMMAILSHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +++  ++   +++   L E  F      +   I    P   L+ +F+ D RD
Sbjct: 121 LVPASIGQLRERESEISGSVSARLLHEGTFLHPTRGVTFYIRDITPEGELRDVFLSDRRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIIL--NDGEVHRKSPISKDISIMKFKSYTLQTESANSS-- 236
                 Y AQS  +  D     L    G         + +S   F++ T       +   
Sbjct: 181 PDRAIAYTAQSAYVLRDDDGPKLTMRSGLAQTLRAEDQTLSTTDFENLTYDISGLVTQNG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +A   +   LL           + +     E H R  Q L  V+  LI   A    
Sbjct: 241 PPRRRARQISTWELLTDTEAVSEEVKDSVGEVLEEAHMRFEQPLLCVVAALIGYAALMTG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R       +     + F +    S +   +  N    P++YL       I  +++++
Sbjct: 301 GFSRFGVTKQIVGAIFLLVF-IKIVESMVTTPVHANAALWPLIYLPSIVGLIIAGVLLQR 359


>gi|296532233|ref|ZP_06894980.1| permease YjgP/YjgQ [Roseomonas cervicalis ATCC 49957]
 gi|296267440|gb|EFH13318.1| permease YjgP/YjgQ [Roseomonas cervicalis ATCC 49957]
          Length = 381

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 159/373 (42%), Gaps = 14/373 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R +G   L   + +  + W+ Q L+ I LV     SL + ++++G L+P+ 
Sbjct: 1   MTRLDRYLFRQLGIGLLAVTIGLAALVWLTQSLRFIELVLDRGLSLAVFVELTGLLLPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    + T      +N + EL+++   G S   L +P L +A L + F    +  
Sbjct: 61  FAVILPITTFVVTLFSYVRLNGDRELVVMRAAGLSDWQLSRPALLIATLATGFCLFLQLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +    + +  +    L+E +F  L DDL +   +   + TL+GI + D R+
Sbjct: 121 LVPVSHAAFRSWQFEIRNEMAAILLQEGVFSSLGDDLTVYARRREADGTLRGILVHDMRE 180

Query: 181 TQTHKIYYAQSGSIDLD--RQAIILNDGEVHRKSPIS----KDISIMKFKSYTLQTESAN 234
             T     AQ G +        +IL +G+  +  P +      +S++ F   ++   S++
Sbjct: 181 PGTPVTIMAQEGRLVSTPAGPRVILLNGQREQLEPATATHPARLSVLSFAENSVDLASSS 240

Query: 235 SST----IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            S         + ++ +  LLNP+P   N     +  +R+E H+RL      +   ++ +
Sbjct: 241 RSPVDVARNRDSRERFVPELLNPDPAE-NLPERDIRKFRAEGHQRLASPFTALSMAMVGL 299

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             A      R+     P  I +++   +      I +   ++  YIP+++L         
Sbjct: 300 AVALASGF-RRHGDWRPAAIGVALVVALLALGLAIGNLAARDNRYIPLIWLHTLGPVLGA 358

Query: 351 LLMIKKK--YTKI 361
             ++  +  + KI
Sbjct: 359 AWVLSGRPGWPKI 371


>gi|153009928|ref|YP_001371143.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
           49188]
 gi|151561816|gb|ABS15314.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 402

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 113/356 (31%), Positives = 202/356 (56%), Gaps = 6/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   FL      V I W +Q+LQRI+ +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFLAVLGAAVGITWTVQVLQRIDFLTTSGQTFQTIIQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA ++S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAAVISVVSFLVANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VDPYARMNMRAMIANASADLMNVIVQEGNFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--S 236
                IYYA  G+I        +++ +GEV R+      +SI+KF SY        S   
Sbjct: 181 PSLDLIYYAADGAIASTPTGDMLLMQNGEVQRRDVSDGTVSIIKFNSYAFDLSQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ LS+LLNP+PN+P  +   L  Y++E H+RLTQWL+PV+F +I++  A   
Sbjct: 241 DFVIYAKDRPLSYLLNPDPNDPILQTRPL-RYKAELHRRLTQWLYPVVFAMIALAFAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
               +  ++   F ++S +  V+W   +   + +++  YI ++YL    +  +   
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDAGYIVVMYLVPAAVILVTGF 354


>gi|240140389|ref|YP_002964868.1| putative permease [Methylobacterium extorquens AM1]
 gi|240010365|gb|ACS41591.1| putative permease [Methylobacterium extorquens AM1]
          Length = 389

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 159/358 (44%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R    +FL   + +    WV Q L+ ++LV++  ++L + L I+   +PT+
Sbjct: 1   MTQIERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAKGQTLLVFLFITALSLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L  +N ++EL+++   G     L++P   LA  +S+ +      
Sbjct: 61  ITVIAPVALFIACVYALNKLNGDSELIVMSAAGMPPRQLLRPFATLAFAISVVVAFLTIQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ +  + +     + L+E  F  LD+ +     +   + +LQG+FI D R+
Sbjct: 121 VMPSSFQELRDVLTRVRGDFVANVLKEGQFTALDNGITFHFRERGADGSLQGLFIQDKRE 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                +Y A+ G +     +  ++L  G +HR+   S+D SI+ ++ Y +     +   S
Sbjct: 181 AGKAVVYLAERGRVSEVDGQTYLVLEKGSIHRQQKDSRDSSIVSYERYAVDLAAFTPPDS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V K  +++   LL P+     YR +    +R+E H RL+ WL+P+    I+  A    
Sbjct: 241 ETVYKPRERSTMALLFPDTGEGYYRLQ-KGRFRAELHDRLSAWLYPLALAFIAFAALGDP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ + +      + +   +            ++P  +  +Y       ++  L+I
Sbjct: 300 RTTRQGRGLAVAGAVVGV-IALRIAGFAASSAAVRSPGAVVAIYAAPLGAIALSCLLI 356


>gi|258542097|ref|YP_003187530.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256633175|dbj|BAH99150.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256636232|dbj|BAI02201.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
 gi|256639287|dbj|BAI05249.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
 gi|256642341|dbj|BAI08296.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
 gi|256645396|dbj|BAI11344.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
 gi|256648451|dbj|BAI14392.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
 gi|256651504|dbj|BAI17438.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654495|dbj|BAI20422.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
          Length = 401

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/357 (21%), Positives = 153/357 (42%), Gaps = 8/357 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y+   +  + L +   +  + W++Q L+ ++LV     SL + ++++  LIP+ + 
Sbjct: 33  TLDRYVFHQLLVALLATTGGLAALIWLMQSLRFVSLVVDRGLSLRVFIELTSLLIPSFVA 92

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    + +  V   +  + EL ++   G S+  L +  L  A++ +I  F+    I 
Sbjct: 93  VVLPITTFVVSLFVYQRLAGDRELTVMQAAGLSQFALARAGLGCALMATIMGFLLNLWIV 152

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q     +  +    L+E +F ++ D + + I   + + TL GI + D R   
Sbjct: 153 PTSYHAFRQYEFDIRNKMAAFMLQEGVFTKVSDAMTVYIRSRSHDGTLHGIMVEDDRQPG 212

Query: 183 THKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST-IV 239
                 A  GS  I  D   +IL DG        +  ++++ FK  ++   SA+      
Sbjct: 213 NQATILANHGSMMIVNDTPRVILYDGSRQVIDHKTGRLNMLVFKQDSMDLSSAHQEDARF 272

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             A + +L  LL+P+P   +        ++ E  +RLT  L    F ++ +VA  + A  
Sbjct: 273 RDAAEMSLGELLHPDPQQVSE--RDTGKFKVEGWRRLTSPLTCFSFAMVGLVAVLRGAFS 330

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMI 354
           R      P+  ++    G+      + +   +N   IP++ L   L  +    +L I
Sbjct: 331 RYGNIKRPL-AAVLTVVGLLAINLLLQNLASRNMALIPLIPLVALLPGLICAGILFI 386


>gi|330993929|ref|ZP_08317859.1| hypothetical protein SXCC_03824 [Gluconacetobacter sp. SXCC-1]
 gi|329758875|gb|EGG75389.1| hypothetical protein SXCC_03824 [Gluconacetobacter sp. SXCC-1]
          Length = 388

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 158/357 (44%), Gaps = 6/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + Y+LR +  + + +   +V + W+ Q L  ++LV     SL + L+++G LIP+ 
Sbjct: 15  LSILDGYMLRQLLLALVATTGALVTLIWLTQSLHFVSLVVGRGLSLRVFLELTGLLIPSF 74

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +    +   +  + EL ++   G S   + +P L  A + ++   +    
Sbjct: 75  VAVILPITTFVVVQFIYQRLGGDRELTVMQAAGLSPALMARPGLMCAAIATLVCLVLNVW 134

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      +Q   + +  +    +++ +F ++ D++ + I   + + TL GI + D R 
Sbjct: 135 IVPVSYHAFRQYEFQIRNRMAAFLIQDGVFTQVSDNMTVYIRARDKDGTLHGIMVEDDRT 194

Query: 181 TQTHKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-T 237
                   A+ G+  I  D+  ++L +G        +  ++++ F   T+   S +++ T
Sbjct: 195 PGAEATILAEEGNLVIINDQPRVVLFNGSRQEIDSHTGRLNVLTFTRNTIDLSSPHTAHT 254

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +  AN+ +++ LL+P+ +   Y          E  +RL+       F +I +V A   +
Sbjct: 255 RLPDANELSIAQLLHPDLHQ--YSRRDESKMFIEAWRRLSTPFCAFSFAMIGLVGAMGGS 312

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             RQ   + P+ +++     V      + +   +N   +P+++L       +  +M+
Sbjct: 313 HSRQAGIVRPV-LAILAVVAVQALTLLVQNLASRNLQLMPLMWLCTVGPGIVCAIML 368


>gi|239831521|ref|ZP_04679850.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
           3301]
 gi|239823788|gb|EEQ95356.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
           3301]
          Length = 402

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 113/356 (31%), Positives = 202/356 (56%), Gaps = 6/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   FL      V I W +Q+LQRI+ +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFLAVLGAAVGITWTVQVLQRIDFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA ++S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAAVISVVSFLVANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VDPYARMNMRAMIANASADLMNVIVQEGNFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--S 236
                IYYA  G+I        +++ +GEV R+      +SI+KF SY        S   
Sbjct: 181 PALDLIYYAADGAIASTPTGDMLLMQNGEVQRRDVSDGTVSIIKFNSYAFDLSQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ LS+LLNP+PN+P  +   L  Y++E H+RLTQWL+PV+F +I++  A   
Sbjct: 241 DFVIYAKDRPLSYLLNPDPNDPILQTRPL-RYKAELHRRLTQWLYPVVFAMIALAFAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
               +  ++   F ++S +  V+W   +   + +++  YI ++YL    +  +   
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDAGYIVLMYLVPAAVILVTGF 354


>gi|58038773|ref|YP_190737.1| hypothetical protein GOX0298 [Gluconobacter oxydans 621H]
 gi|58001187|gb|AAW60081.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
          Length = 390

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 61/355 (17%), Positives = 145/355 (40%), Gaps = 6/355 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YILR +  + L        + W+ Q L  +++V     SL + ++++  ++P+ + 
Sbjct: 15  LLDRYILRQLLIALLALTGGATALIWLTQSLHFVSMVVQHGLSLRVFIQLTSLMLPSFIA 74

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        M  + EL ++   G S + L +P L  A    +  ++    + 
Sbjct: 75  VILPITTFLVVLFTYQRMVGDRELTVMRAAGRSPLELARPGLLCAFFSVVLCYVLTLWLA 134

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +   + +  +    L++ +F  L +D+ + +     +  L G+ + D RD  
Sbjct: 135 PVSYHAFHRYEFQIRNRMAAFLLQDGVFTSLSNDMTVYVRGRTSDGQLHGVLVEDDRDPD 194

Query: 183 THKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST-IV 239
           +H    A+ G+  +  D+  ++L DG        +  ++++ F   T+   S+       
Sbjct: 195 SHTTILAERGTMVVVNDQPRVVLYDGSREEIDRHTGRLNVLTFGRNTIDLTSSRQHNHED 254

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
              ++ +L  L +P+P+  +              +RLT  L  + F +I +V   + A  
Sbjct: 255 RDPDEMSLRELFHPDPHEVSE--RDRGKNIVVGWRRLTSPLTALSFAMIGLVTVLRGAFS 312

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           R      P+ I++    G+      + +   ++   +P+++L     + +   M+
Sbjct: 313 RHGNITRPL-IAILTVVGLLAISLMLQNLAGRHLALVPLIWLEAILPAVVCAAML 366


>gi|304321348|ref|YP_003854991.1| putative permease [Parvularcula bermudensis HTCC2503]
 gi|303300250|gb|ADM09849.1| putative permease [Parvularcula bermudensis HTCC2503]
          Length = 426

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 68/358 (18%), Positives = 152/358 (42%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI + +   FL+       + W  Q+LQR++L+     SL   L+++  LIP++
Sbjct: 46  LTLLDRYIFKQVAVPFLLILACTTAVIWFTQMLQRVDLMVEDGGSLLSFLRVTVLLIPSL 105

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ PF         L     ++EL  +   G SR+ L +PVL L+IL ++        
Sbjct: 106 VGVILPFAVFAAVLYALNLFVTDSELPAMRAAGASRLRLARPVLVLSILAALVSLYINAD 165

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++PK    ++Q     +  +  S + E +F +    + +   +  P     G+FI DS D
Sbjct: 166 LQPKTYRQLRQTVEDVRSDIAQSLIREGVFVQPTAQITVFAQEVRPGGQFIGLFINDSSD 225

Query: 181 TQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST- 237
            +  K Y A+ G   +      ++L +G V  +   +  + + ++    +   + +  + 
Sbjct: 226 PRETKTYTAERGLFQMAETGPKLLLIEGTVQYRDRETGRVDVFRYIETAVDLAAFDRGSG 285

Query: 238 -IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              L   ++ +S LLNP+ ++P+    L + YR+  H RL   L+     ++++      
Sbjct: 286 GRSLDETERTVSQLLNPDLSDPSIA-RLADRYRAAGHARLATPLYCPALAVVALCFLLSP 344

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            + R+      + +++  +  +  G   +            + Y+    +  +  + +
Sbjct: 345 PISRRGYG-QQVLMAIGCALLLRTGGFLLQGLAADLGALNGLQYIVPLAVILLGSVYL 401


>gi|329114150|ref|ZP_08242912.1| Hypothetical protein APO_0930 [Acetobacter pomorum DM001]
 gi|326696226|gb|EGE47905.1| Hypothetical protein APO_0930 [Acetobacter pomorum DM001]
          Length = 401

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/357 (21%), Positives = 153/357 (42%), Gaps = 8/357 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y+   +  + L +   +  + W++Q L+ ++LV     SL + ++++  LIP+ + 
Sbjct: 33  TLDRYVFHQLLVALLATTGGLAALIWLMQSLRFVSLVVDRGLSLRVFIELTSLLIPSFVA 92

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    + +  V   +  + EL ++   G S+  L K  L  A++ +I  F+    I 
Sbjct: 93  VVLPITTFVVSLFVYQRLAGDRELTVMQAAGLSQFALAKAGLGCALMATIMGFLLNLWIV 152

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q     +  +    L+E +F ++ D + + I   + + TL GI + D R   
Sbjct: 153 PTSYHAFRQYEFDIRNKMAAFMLQEGVFTKVSDAMTVYIRSRSHDGTLHGIMVEDDRQPG 212

Query: 183 THKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST-IV 239
                 A  GS  I  D   +IL DG        +  ++++ FK  ++   SA+      
Sbjct: 213 NQATILANHGSMMIVNDTPRVILYDGSRQVIDHKTGRLNMLVFKQDSMDLSSAHQEDARF 272

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             A + +L  LL+P+P   +        ++ E  +RLT  L    F ++ +VA  + A  
Sbjct: 273 RDAAEMSLGELLHPDPQQVSV--RDTGKFKVEGWRRLTSPLTCFSFAMVGLVAVLRGAFS 330

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMI 354
           R      P+  ++    G+      + +   +N   IP++ L   L  +    +L I
Sbjct: 331 RYGNIKRPL-AAVLTVVGLLAINLLLQNLASRNMALIPLIPLVALLPGLICAGILFI 386


>gi|110680306|ref|YP_683313.1| hypothetical protein RD1_3119 [Roseobacter denitrificans OCh 114]
 gi|109456422|gb|ABG32627.1| membrane protein, putative [Roseobacter denitrificans OCh 114]
          Length = 375

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 136/359 (37%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L  +   F    L +V I W+ + +   + + S  +S  + L+ +   +P +
Sbjct: 1   MVRLDRYMLSQLLVLFGFFALVLVAILWINRGVSLFDELISDGQSALVFLEFTALGLPKL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P         V   MN  +EL ++  TG+  + L +PVL   +++ +   +  ++
Sbjct: 61  ITTVLPIATFAAAVYVTNRMNNESELTVLQATGSGPVRLARPVLVFGLIVFLMASMLHHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +  +     +     T   L E  F    + +     + + +  L+ +F+ D R 
Sbjct: 121 LMPLAQQQLGHRQNEIAQNATSRLLTEGRFLHPSEGVTFYTQEIDDDGVLRDVFLSDRRS 180

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   IY A    +  D +    I+ DG   R +  +  ++   F+ ++    +   + +
Sbjct: 181 VEEGVIYTAAHAYLIRDDERTSLIMVDGLAQRLTTATDRLATANFRDFSFDISALVQNDV 240

Query: 239 VL--KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                 +      LL P           +      FH R+   LF ++  LI        
Sbjct: 241 SQRLDPDKMTTFQLLTPWDELSRETGRSIGKITQSFHARIADPLFCIVAALIGFSTLMIG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              R       + ++  +   +    S +   + ++P   P+LYL  F  + + + M+ 
Sbjct: 301 GFSRFG-VWREVGVAFVLLVAIDGLRSTLQSPVRRDPELWPLLYLPTFISALLVIAMLW 358


>gi|316933708|ref|YP_004108690.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
 gi|315601422|gb|ADU43957.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
          Length = 388

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/360 (21%), Positives = 161/360 (44%), Gaps = 5/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +    +  + W+ Q L+ I+L++S  +++   L ++G  +P +
Sbjct: 1   MGSIDRYIFRTTLVSFAVVMGSLTGVIWITQALRGIDLMTSQGQTIITFLGLTGLAVPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +   + L  +  ++E+++++  G S I L +P  +  ++++  + +    
Sbjct: 61  VLVIAPIALMIAVAHTLNRLAVDSEIIVMNAAGLSPIRLFRPFFYATMVVAALVTVIGAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     I +  ++    +  + L+   F +L+  L I++ +  P   L G+FI D+RD
Sbjct: 121 IAPDGLRRIARWDSEITADVLANVLQPGRFAQLEPGLTIRVRERQPGGILVGVFIDDARD 180

Query: 181 TQTHKIYYAQSGSIDLDRQ--AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN-SST 237
                   A  G++  + +   ++L DG + R     ++ +++ F  Y       + +  
Sbjct: 181 PNERISIIADHGTVLKNEKGSFLVLEDGHLERFQAGKQEPTLVAFSRYAFDMSKFSRARD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +     ++ L  LL P  ++P     L   +RSE H RL   ++P  F  ++        
Sbjct: 241 VSYGIRERYLWELLFPPADDPLLA-RLPTEFRSEMHDRLLAPIYPFFFATVAFAFLGLPR 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             RQ +    I  ++ ++F V      +     + PY   + YL L    +I L +IK+ 
Sbjct: 300 TTRQSRNFSMIG-AVLVAFVVRLAGFALSVIANKTPYVAGLQYLLLAVAIAICLWLIKRN 358


>gi|163746448|ref|ZP_02153806.1| hypothetical protein OIHEL45_13625 [Oceanibulbus indolifex HEL-45]
 gi|161380333|gb|EDQ04744.1| hypothetical protein OIHEL45_13625 [Oceanibulbus indolifex HEL-45]
          Length = 377

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 131/368 (35%), Gaps = 9/368 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YIL  +   F    L +V + W+ + +   + +    +S  + L+ +   +P +
Sbjct: 1   MARIDRYILSQLLVMFGFFALVLVALFWINRAVVLFDRLIGDGQSALVFLEFTALGLPKL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P      +  V   M+  +EL ++   G+    L +PV    + + + +    + 
Sbjct: 61  IVTVLPIATFAASVYVTNRMSGESELTVLQAAGSGPWRLARPVFVFGLCVGLMMTALSHF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +  +KQ  A+    LT   L E  F    D++       + +  L+ +F+ D R 
Sbjct: 121 LVPMAQGQLKQREAEISRNLTAQLLTEGTFLHPSDEVTFYTRAIDNDGVLRDVFLSDRRK 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST- 237
                IY A    +    D   +I+ +G   R       ++  KF+ ++       S+  
Sbjct: 181 ADEGVIYTAAEAYLARNGDNTTLIMLNGMAQRLDTEQNRLATAKFRDFSFDISPLVSTDD 240

Query: 238 -IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                 +      LL                   E H RL Q LF ++  +I        
Sbjct: 241 ATDQSVSSMVTPDLLWDWAGLAAQLDTAPGIIAEELHSRLAQPLFCIVAAMIGFATLILG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R         I+  +   +      ++ +I +     P+ YL     + + L M+ +
Sbjct: 301 GFSRFG-VWREAVIAFGLLIAIDGLRGTLVVQIRETAALWPLAYLPSLIGAVLTLAMLWQ 359

Query: 357 ----KYTK 360
               ++ +
Sbjct: 360 AAHPRWIR 367


>gi|85716329|ref|ZP_01047302.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
 gi|85696845|gb|EAQ34730.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
          Length = 390

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/358 (21%), Positives = 169/358 (47%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF++  + +  + W+ Q L+ I+L++S  +++   L I+   IP +
Sbjct: 1   MGSIDRYIFRTTLASFVVVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITSLAIPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +++P    +  ++ L  +  ++E+++++  G S   L +P ++  +++++ +      
Sbjct: 61  VLIISPIALMIAISHTLHKLATDSEIIVMNAAGLSPFRLFRPFIYATVIVALLVAFIAAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +K+  A+    +  + L+   F +LD +L I+I +  P   L GIFI D R+
Sbjct: 121 LAPDGMRRLKRWDAEITADVLANVLQPGRFAQLDPNLTIRIRERQPGGQLAGIFIDDRRN 180

Query: 181 TQTHKIYYAQSGSIDLDRQ--AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-- 236
           +       A  G++  + +   ++L DG + R     ++ +++ F  Y       ++   
Sbjct: 181 SDERLSIIADHGTVMKNDKGSFLVLEDGHLERFETGKREPAMVAFDRYAFDMSKFSNRGH 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +V    ++ L  L+ P+ N+P  + +L   +R+E H R T  ++P +F  ++       
Sbjct: 241 DVVYGIRERYLWELIVPDQNDPVVQ-QLQGQFRAELHDRFTAPIYPFVFAALTFAFLGTP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +    +  +++  FG+      +     ++P    + YL LF    I L +I
Sbjct: 300 RTTRQSRNFS-MGAAIAAVFGLRMAGFALSVMTVKSPLAALLQYLLLFGAIGISLRVI 356


>gi|39936124|ref|NP_948400.1| permease YjgP/YjgQ [Rhodopseudomonas palustris CGA009]
 gi|192291842|ref|YP_001992447.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39649978|emb|CAE28502.1| possible permease [Rhodopseudomonas palustris CGA009]
 gi|192285591|gb|ACF01972.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 388

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/360 (20%), Positives = 158/360 (43%), Gaps = 5/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +    +  + W+ Q L+ I+L++S  +++   L ++G  +P +
Sbjct: 1   MGSIDRYIFRTTLVSFAVVMGSLTGVIWITQALRGIDLMTSQGQTIITFLGLTGLAVPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +   + L  +  ++E+++++  G S I L +P  +  ++++  + I    
Sbjct: 61  VLVIAPIALMIAVAHTLNRLATDSEIIVMNAAGLSPIRLFRPFFYATMVVAALVIIIGAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     I +  ++    +  + L+   F +L+  L I++ +  P   L G+FI D+R 
Sbjct: 121 IAPDGLRRIARWDSEITADVLANVLQPGRFAQLEQGLTIRVRERQPGGLLVGVFIDDARA 180

Query: 181 TQTHKIYYAQSGSIDLDRQ--AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN-SST 237
                   A  G++  + +   ++L DG + R     ++ +++ F  Y       + +  
Sbjct: 181 PNERVSIIADHGTVVKNDKGSFLVLEDGHLERFQTGKQEPALVAFSRYAFDMSKFSRARD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +     ++ L  LL P  N+P     L   +RSE H RL   ++P  F  ++        
Sbjct: 241 VAYGIRERYLWELLWPAENDPLLA-RLPTEFRSEMHDRLLAPIYPFFFAAVAFAFLGLAR 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             RQ +       ++ ++F V      +     + PY   + YL LF  +   L +I + 
Sbjct: 300 TTRQSRNFSMAG-AVLVAFVVRLAGFALSVIANKTPYVAGLQYLLLFVATGTCLWLINRN 358


>gi|23016381|ref|ZP_00056138.1| COG0795: Predicted permeases [Magnetospirillum magnetotacticum
           MS-1]
          Length = 372

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 151/365 (41%), Gaps = 8/365 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y++R +    +     +  + W+ Q L+ + ++ +   S+   LK++  L+P  
Sbjct: 1   MSGITRYMMRQMLVGMIFVSAALACVLWLTQSLRFVEMIVNKGLSIGAFLKLTILLMPGF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P             +  + EL+++   G S ++L +P + L + +S   ++    
Sbjct: 61  LVVIIPISLFAVVLFTYNRLIADRELIVLRAAGLSHLSLARPAIILGLAVSAVGYLLSCW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P    +  ++    +  +    L+E +F +  + L I +    PN  L G+ + D R 
Sbjct: 121 IIPHTVRSFHEMQWTIRNDIGNVLLQEGMFNKFGEGLTIYVRSRTPNGELTGLLVHDKRH 180

Query: 181 TQTHKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-- 236
            Q      A+ G+         +++ +G     +P +  +S++ F +YT+   +A  +  
Sbjct: 181 PQRAVTLMAERGALVYTEQGPRVLMINGNRQEVTPGTGKLSLLYFDNYTVDFNTATGNKP 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                A +++   LL+ +  +       L  ++SE H RL   L+ + F L++       
Sbjct: 241 DRFRDARERSTLELLSMD--DSMENKGELRRFKSELHSRLASPLYNLGFPLLAAAVLLTS 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R+ + +  +  + ++   V        +    N  ++P++YL      +  L ++ +
Sbjct: 299 GFDRRGQTVQVMVSA-ALMVAVQALALGASNLSSGNLAFVPLIYLNATLPIAFGLWVLAR 357

Query: 357 -KYTK 360
             + +
Sbjct: 358 PPWPR 362


>gi|110634108|ref|YP_674316.1| permease YjgP/YjgQ [Mesorhizobium sp. BNC1]
 gi|110285092|gb|ABG63151.1| permease YjgP/YjgQ [Chelativorans sp. BNC1]
          Length = 416

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 113/358 (31%), Positives = 186/358 (51%), Gaps = 7/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR     F  S  +++ I W  Q+L R++LV+SS +S      ++   +P+V
Sbjct: 24  MKVIERYILRRTLAIFAASLAWLLVIVWTTQVLNRLDLVTSSGQSAATFFTVAFLTLPSV 83

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ PF   +     L +MN ++EL++I   G+ R T+I P+L +AI+ SI  F   N 
Sbjct: 84  VPVIMPFVIGIAVAQTLATMNADSELVVISAAGSPRSTIIWPILIIAIIASIAAFAINNT 143

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L  + L E  F ++ D ++++IS+  PN  L GIF++DSRD
Sbjct: 144 LEPYSRQKMRTILANANADLITTVLREGSFRKVVDGIFVQISERLPNGELGGIFVIDSRD 203

Query: 181 TQTHKIYYAQSGSIDLDRQAIILN--DGEVHRKSPISKDISIMKFKSYTLQTESANSST- 237
                 Y A+ G+        IL   +GEV R    + D+S+++F SY        +   
Sbjct: 204 PNLKLAYRAERGATVKRDGGNILVLLEGEVQR-QVANGDVSVIRFDSYAFDLSQFTNGEG 262

Query: 238 -IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              L   D+ LS LL P+PN+  +  +  +++R+E H R ++WL+P++F LI I  A   
Sbjct: 263 VPTLFPKDRYLSELLEPDPNDKFFA-KNPQSFRAELHTRFSEWLYPIVFALIGIAVAGDA 321

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              R+ + +HP+  +L+I   V W   Y  ++ E  P Y  +LY        +    I
Sbjct: 322 RSFRETR-LHPMVTTLTIGLLVRWAGFYASNEAETVPAYTYLLYAAPLGTILLCCWFI 378


>gi|91977434|ref|YP_570093.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
 gi|91683890|gb|ABE40192.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
          Length = 388

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 72/359 (20%), Positives = 159/359 (44%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + YI R    SF +    +  + W+ Q L+ I+L++S  +++   L ++G  +P +
Sbjct: 1   MGAIDSYIFRTTLTSFAVVMASLTGVIWITQALRGIDLMTSQGQTIVTFLGLTGLAVPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +   + L  +  ++E+++++  G S I L +P ++  I +++ + +    
Sbjct: 61  ILVIAPIALMIAVAHTLNRLATDSEIIVMNAAGLSPIRLFRPFVYATIAVAVLVTLIGAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     I +  ++    +  + L+   F +L+ +L I++ +      L G+FI D RD
Sbjct: 121 IAPDGLRRIARWDSEITADVLANVLQPGRFAQLEQNLTIRVRERQAGGLLVGVFIDDRRD 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN-SST 237
                   A  G++    D   ++L DG + R     ++ +++ F  Y       + +  
Sbjct: 181 PNDRVSIIADHGTVVKNSDGSFLVLEDGHLERFQAGKQEPALVAFSRYAFDMSKFSRARD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +     +  L  L+ P+P +P    ++   +R+E H RL   ++P  F  ++        
Sbjct: 241 VTYGIREHYLWELIWPDPKDPLLA-QVPTQFRAEMHDRLLAPIYPFFFAAVTFAFLGMPR 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             RQ +    +  +++ +F V      +       PY   I YL L     + L +I++
Sbjct: 300 TTRQSRNFSMVG-AVACAFVVRLAGFALSVVANHTPYIAGIQYLLLAVAIGVSLWLIRR 357


>gi|170743203|ref|YP_001771858.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
 gi|168197477|gb|ACA19424.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
          Length = 388

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 147/308 (47%), Gaps = 5/308 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R    +FL     +  + WV Q L+ ++LV++  +++ I   I+G  IP +
Sbjct: 1   MKQIERYIFRIALGAFLACLAGLTGVIWVTQALRELDLVTAKGQTVLIFFLITGLSIPAL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P    M   + L  +N ++EL+++   G S   L++P L LA+++S  L      
Sbjct: 61  LTVVAPVALFMAVVHALNRLNGDSELIVMSAAGMSPRQLLRPFLTLALIVSAALGFLTIQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ L  + +     + ++E  F  LD+ +     +  P   L GIF+ D R+
Sbjct: 121 VLPSSFQELRDLLTRVRGDFIANVVQEGQFTSLDNGITFHFRESAPGGVLLGIFMQDRRE 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                 Y A+ G       +  ++L  G +HR+   S+D SI+ F  Y +     +   +
Sbjct: 181 AGRSVTYLAERGQALDLDGQTYLVLEKGSIHRQQQNSRDASIISFARYAVDLAAFTPPDT 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V K  +++ + LL P+PN   Y+  +   +R+E H RLT WL+P+   LI+  A    
Sbjct: 241 DTVYKPRERSTAQLLFPDPNEHYYK-LVKGRFRAELHDRLTSWLYPLAMALIAFAALGDP 299

Query: 297 ALVRQRKK 304
              RQ + 
Sbjct: 300 RTTRQGRG 307


>gi|300023217|ref|YP_003755828.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525038|gb|ADJ23507.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 398

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 78/361 (21%), Positives = 162/361 (44%), Gaps = 7/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ F  Y+ R    SF +  + +  I W+   L++ N+V+S  +   +L+K++   +P +
Sbjct: 1   MRIFSKYVFRQAAGSFALIMVSLTGIVWIALALRQFNVVTSQGQDTWMLIKMTSLAVPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ PF F +   + L  +N ++EL++I  +G    T  +P+L LA+L+SIFL    + 
Sbjct: 61  MAVIAPFSFLIAALHTLNRLNTDSELIVISASGAKVWTAARPLLLLALLVSIFLAFVSHF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            +P     ++    + +  L    ++   F   +  L   I   + N  L G+ + D+RD
Sbjct: 121 AQPWSMRQLRDYMVQVRSDLLTQVIQPGRFTSPETGLMFHIRDRDANGELLGLVMHDTRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIIL--NDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
               + Y A+ G++        L    G + R++  +    I+ F  Y +  +       
Sbjct: 181 KAQSQSYLAEHGTLVKQDGTAYLVMTVGHIIRRTDANGPPQIVAFDKYIVDLDRFEPQDG 240

Query: 239 VL---KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                K  ++  S L+NP+P + +Y+ +    +RSE H+R    L+P+ F  + I    +
Sbjct: 241 GPGDLKPRERYFSELINPDPESSSYKNQ-PGQFRSELHERFVTPLYPLAFAFLIIAFVGQ 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               R  +    + ++  I+         I + + +NP  + + Y          L+++K
Sbjct: 300 AQSTRTSRM-QSLVVTFVIAATCRLAGLAITNAMVRNPSMVAVAYGLPIGAIVYSLIVLK 358

Query: 356 K 356
           +
Sbjct: 359 R 359


>gi|86357092|ref|YP_468984.1| putative permease protein [Rhizobium etli CFN 42]
 gi|86281194|gb|ABC90257.1| putative permease protein [Rhizobium etli CFN 42]
          Length = 393

 Score =  159 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 129/356 (36%), Positives = 218/356 (61%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 1   MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  L++P+L LA ++S+F F  +NI
Sbjct: 61  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRTILVRPILLLAAVISVFSFFVDNI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP+ ++  +Q+ A+    L  S +EE  F +LD+ LY++IS+      L+G+F+ D RD
Sbjct: 121 VEPRAKTVARQMIAETYADLLSSVIEEKTFRKLDEGLYVQISQRLAGRMLKGLFVADERD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTI 238
                IYYA+ G++D     +I++DGEVHRK+P   ++S++ F SY+      + +    
Sbjct: 181 PAYELIYYAKEGAVDDTGTTLIMHDGEVHRKTPDG-NVSVINFDSYSFDLSDMTESRGQA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            LKA+D++L FL NP+PN+ +Y     ++YR+E H+RLT W+ PV+F L S+  A     
Sbjct: 240 TLKASDRDLWFLFNPDPNDKDYTIR-PQSYRAELHRRLTDWILPVVFALFSLAIAGDAR- 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +  ++HP+  +L  +F + W   Y  ++I+ +P YI +LY      S + ++ +
Sbjct: 298 SHREARLHPMVSALGYAFALRWAAFYAANQIDTDPEYIAVLYALPIVSSIVSIIFL 353


>gi|148255228|ref|YP_001239813.1| putative permease [Bradyrhizobium sp. BTAi1]
 gi|146407401|gb|ABQ35907.1| putative permease [Bradyrhizobium sp. BTAi1]
          Length = 389

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 81/358 (22%), Positives = 162/358 (45%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +  + +  + W+ Q L+ I+L++S  +++   L I+G +IP++
Sbjct: 1   MGSIDRYIFRTTLASFAVVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITGLVIPSL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +  ++ L  +  ++E+++++  G S I L  P  +   +++I +      
Sbjct: 61  LGVIAPIALMIAVSHTLNKLATDSEIIVMNAAGMSPIRLFVPFAYATCVVAILVTFIAAF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P     IKQ  A+    +  + L+   F +LD +L I+I +  P   LQGI I D RD
Sbjct: 121 FAPDGLRRIKQWDAEITADVLANILQPGRFAQLDQNLTIRIRERQPGGELQGILIDDRRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-- 236
            +      A+ G++  + D   ++L DG + R     ++ +++ F  Y       ++   
Sbjct: 181 PKERITIIAEKGTVVKNPDGSFLVLEDGNLERFEVGKREPAMVAFARYAFDMSKFSNQGR 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L   ++ L  L+ P  ++P Y+ ++   +R E H R    ++P  F  ++       
Sbjct: 241 DVTLGIRERYLWELMAPAEDDPIYK-QIPGQFRQELHDRFLAPIYPFAFAALTFAFLGAP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +       ++   FGV            + P    + YL LF +  + + +I
Sbjct: 300 RTTRQSRNFS-FGSAILAVFGVRMAGFACSVMTVKTPVAALVQYLMLFGVLGLSIWII 356


>gi|92117863|ref|YP_577592.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
 gi|91800757|gb|ABE63132.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
          Length = 389

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 164/358 (45%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF++  + +  + W+ Q L+ I+L++S  +++   L I+   IP +
Sbjct: 1   MGSIDKYIFRTTLASFVVVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITSLAIPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +++P    +  ++ L  +  ++E+++++  G S   L +P ++  +++++ +      
Sbjct: 61  VLIISPIALMIAISHTLHKLATDSEIIVMNAAGLSPFRLFRPFIYATVVVALLVAFIAAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +K+  A+    +  + L+   F +LD +L I++ +  P   L GIFI D R+
Sbjct: 121 LAPDGMRRLKRWDAEITADVLANVLQPGRFAQLDPNLTIRVRERQPGGLLVGIFIDDRRN 180

Query: 181 TQTHKIYYAQSGSIDLDRQ--AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-- 236
                   A  G++  +     +IL DG + R     ++ +++ F+         ++   
Sbjct: 181 PNERLSIVADHGTVMKNDNGSFLILEDGHLERLEAGKREPNMVAFRRNAFDMSKFSNRGH 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +V    ++ L  L+ P P +P  + +L   +R+E H R T  ++P  F  ++       
Sbjct: 241 DVVYGIRERYLWELIAPEPTDPLVQ-QLPGQFRAELHDRFTAPIYPFAFAALTFAFLGTP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +    +  ++   FG+      +     ++P    + YL LF    + L +I
Sbjct: 300 RTTRQSRNFS-MGAAIVTVFGLRMAGFALSVMAVKSPTAPLLQYLLLFAAIGVSLRVI 356


>gi|220925665|ref|YP_002500967.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
           2060]
 gi|219950272|gb|ACL60664.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
           2060]
          Length = 388

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 149/307 (48%), Gaps = 5/307 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R    +FL     +  + WV Q L+ ++L+++  ++L I   I+G  IP +
Sbjct: 1   MKQIERYIFRIALSAFLACLAGLTGVIWVTQALRELDLITAKGQTLLIFFLITGLSIPAL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P    M   + L  +N ++EL+++   G S   L++P L LA+++ + +      
Sbjct: 61  LTIVAPVALFMAVLHALNRLNGDSELIVMSAAGMSPRHLMRPFLTLALIVGLAVAFLTIQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ L  + +     + ++E  F  LD  +     +  P  TL GIF+ D R+
Sbjct: 121 VLPSSFQELRDLLTRVRGDFIANVVQEGQFTSLDSGITFHFRERGPGGTLLGIFMQDRRE 180

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                +Y A+ G       +  ++L  G +HR+ P S+D SI+ F  Y +     +   +
Sbjct: 181 AGRSVVYLAERGQAVDLDGQTYLVLEKGSIHRQQPNSRDASIITFARYAVDLAAFTPPDT 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V K  +++ + LL P+PN   Y+  +   +R+E H RLT WL+P+   LI+  A    
Sbjct: 241 DTVYKPRERSTAQLLFPDPNEHYYK-LVKGRFRAELHDRLTAWLYPLAMALIAFAALGDP 299

Query: 297 ALVRQRK 303
              RQ +
Sbjct: 300 RTTRQGR 306


>gi|190891136|ref|YP_001977678.1| permease [Rhizobium etli CIAT 652]
 gi|190696415|gb|ACE90500.1| putative permease protein [Rhizobium etli CIAT 652]
          Length = 403

 Score =  159 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 129/356 (36%), Positives = 219/356 (61%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 11  MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  L++P+L LA ++S+F F  +NI
Sbjct: 71  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSILVRPILLLAAVISVFSFFVDNI 130

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP+ ++  +Q+ A+    L  S +EE  F ++D+ LY++ISK      L+G+F+ D RD
Sbjct: 131 VEPRAKTVARQMIAETYADLLSSVIEEKTFRKIDEGLYVQISKRLAGRMLKGLFVADERD 190

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTI 238
                IYYA+ G++D     +I++DGEVHRK+P   ++S++ F SY+      + +    
Sbjct: 191 PAYELIYYAKEGAVDDSGTTLIMHDGEVHRKTPDG-NVSVINFDSYSFDLSDMTESRGQA 249

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            LKA+D++L FL NP+PN+ +Y     ++YR+E H+RLT W+ PV+F L S+  A     
Sbjct: 250 TLKASDRDLWFLFNPDPNDKDYTIR-PQSYRAELHRRLTDWILPVVFALFSLAIAGDAR- 307

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +  ++HP+  +L+ +F + W   Y  ++I+ +P YI +LY      S + ++ +
Sbjct: 308 SHREARLHPMVSALAYAFALRWAAFYAANQIDTDPEYIAVLYGLPIVSSIVSIIFL 363


>gi|254501938|ref|ZP_05114089.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
 gi|222438009|gb|EEE44688.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
          Length = 395

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/360 (22%), Positives = 169/360 (46%), Gaps = 6/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + E YI+R    +F ++   +  + W  Q L++++LV+S  +++   + I+   +P +
Sbjct: 1   MNTLERYIIRRTAYAFTLTLAAMTGVVWATQALRQLDLVTSKGQTIVQFIGITMLALPFL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V PF   +    VL S++ ++EL++ID +G SR  ++KPVL  A ++ + +      
Sbjct: 61  IVTVAPFALMIALILVLNSLSGDSELIVIDASGGSRFLVLKPVLAFATIIMLLVSALSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + ++    + +  L  + ++   F  +++ L   I   +   TL G+ + D+RD
Sbjct: 121 VAPAGLAQLRTEITRVRADLVANIVKPGRFINVEEGLTFHIRNRSGKGTLDGLLMHDTRD 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
             T   Y A++G+I     R  +++ +G + R+     D+SI++F+SY     +    +S
Sbjct: 181 PDTAFTYQAETGNIVEAAGRTLLVMQNGTIQRRPKQVGDMSIVRFQSYAFDLSNLIPEAS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V K ++++ + LL P P N  +     E  R+E H+R +  L+ + F LI        
Sbjct: 241 EPVFKPSERSTANLLGP-PGNDYFAVTHPERLRAEIHERFSLPLYCLSFALIVFAFLGVA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ + +  +  +++    +      I      +     + Y+       + L+ I +
Sbjct: 300 RTTRQGRGMAIVG-AITCCVLLRTTGFGITAISNDSAVLYAMRYVVPVLGGGLALVSILR 358


>gi|163735795|ref|ZP_02143224.1| hypothetical protein RLO149_00570 [Roseobacter litoralis Och 149]
 gi|161390881|gb|EDQ15221.1| hypothetical protein RLO149_00570 [Roseobacter litoralis Och 149]
          Length = 375

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 135/359 (37%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L  +   F    L +V I W+ + +   + + S  +S  + L+ +   +P +
Sbjct: 1   MVRLDRYMLSQLLVLFGFFALVLVAILWINRGVSLFDQLISDGQSALVFLEFTALGLPKL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P         V   MN  +EL ++  TG+  + L +PVL   +++ +   +  ++
Sbjct: 61  ITTVLPIATFAAAVYVTNRMNNESELTVLQATGSGPVRLARPVLVFGVIVFLMASVLHHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +  +     +     T   L E  F    + +     + + +  L+ +F+ D R 
Sbjct: 121 LMPLAQQQLGHRQNEIAQNATSRLLTEGRFLHPSEGVTFYTQQIDDDGVLRDVFLSDRRH 180

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   IY A    +  D      I+ DG   R +  +  ++   F+ ++    +   + +
Sbjct: 181 VEEGVIYTAAHAYLIRDEDRTSLIMVDGLAQRLTTATDRLATANFRDFSFDISALVQNDV 240

Query: 239 VL--KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                 +      LL P           + T    FH R+   LF ++  LI        
Sbjct: 241 SQRLDPDRMTTFQLLTPWDQLSRETGRSIGTISQSFHARIADPLFCIVAALIGFSTLMIG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              R       +  +  +   +    S +   + ++P   P+LYL  F  + + + M+ 
Sbjct: 301 GFSRFG-VWREVAFAFVLLVAIDGVRSTLQSPVRRDPELWPLLYLPTFISALLVIAMLW 358


>gi|27379218|ref|NP_770747.1| permease [Bradyrhizobium japonicum USDA 110]
 gi|27352369|dbj|BAC49372.1| bll4107 [Bradyrhizobium japonicum USDA 110]
          Length = 389

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 158/358 (44%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +  + +  + W+ Q L+ I+L++S  +++   L I+  ++P +
Sbjct: 1   MGSIDRYIFRTTLASFALVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITSLVVPAL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +++P    +  ++ L  +  ++E+++++  G S   L  P  +   ++++ +      
Sbjct: 61  VLIISPIALMIAISHTLNKLATDSEIIVMNAAGFSPFRLFYPFFYATCVVALLVAFIAAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     IKQ  A+    +  + L+   F +LD +L I+I +  P   L GIFI D RD
Sbjct: 121 LAPDGMRRIKQWDAEITADVLTNILQPGRFAQLDKNLTIRIRERLPGGILAGIFIDDRRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQ--AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-- 236
                   A+ G +  +     ++L  G + R     +D +++ F  Y       +    
Sbjct: 181 PNERVSIVAEHGEVMKNDTGSFLVLETGNLQRFEVGKRDPALVAFGRYGFDMSKFSGQGR 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L   ++ L  L +P+ ++P Y+ ++   +RS  H  L   ++P  F +++       
Sbjct: 241 DVTLGIRERYLWELFSPSEDDPVYK-QIPGQFRSALHDSLLAPIYPFAFAVLTFAFLGAP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +    I  S+   FG+            ++P  + + Y  +     + + MI
Sbjct: 300 RTTRQSRNFS-IGSSIVAVFGLRMAGFACSVMAVKSPAAVLVQYAMVLGAIGVGMWMI 356


>gi|241203949|ref|YP_002975045.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857839|gb|ACS55506.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 393

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 128/356 (35%), Positives = 219/356 (61%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 1   MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  LI+P+L LA  +S+F F  +N+
Sbjct: 61  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAAISVFSFFVDNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP+ ++ ++Q+ A+    L  S +EE  F +LD+ LY++ISK      L+G+F+ D RD
Sbjct: 121 VEPRAKTVVRQMIAETYADLLSSVIEEKTFRKLDEGLYVQISKRMAGRMLKGLFVADERD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTI 238
                IYYA+ G++D     +I+++GEVHRK+P   ++S++ F SY+      + N    
Sbjct: 181 PAYELIYYAKEGAVDDTGTTLIMHEGEVHRKTPDG-NVSVINFDSYSFDLSDMTENRGQA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L+A+D++L FL+NP+P + +Y     ++YR+E H+RLT W+ PV+F L S+  A     
Sbjct: 240 TLRASDRDLWFLINPDPADKDYTIR-PQSYRAELHRRLTDWILPVVFALFSLAIAGDAR- 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +  ++HP+  +L+ +F + W   Y  ++I+ +P YI +LY      S + ++ +
Sbjct: 298 SHREARLHPMVSALAYAFAMRWAAFYAANQIDTDPEYIAVLYAIPIVSSIVSIVFL 353


>gi|126728787|ref|ZP_01744602.1| Predicted permease [Sagittula stellata E-37]
 gi|126710717|gb|EBA09768.1| Predicted permease [Sagittula stellata E-37]
          Length = 376

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 137/359 (38%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ F+ Y+L  +   F    L +V + WV + +   + + +   S  I+L+ +   +P V
Sbjct: 1   MQRFDRYVLSQLMVLFGFFALVLVSVYWVNRAVVLFDRLINDGHSARIVLEFTALSLPAV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P         V   ++ ++EL ++  TG S   L +PVL   I++++ + +  ++
Sbjct: 61  IALVLPMATFAAAVYVTNRLSGDSELTVVKATGFSPWRLARPVLVFGIMVTLMMSVLTHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+    ++    +   +++   L E  F      +   I    P  TLQ + + D R+
Sbjct: 121 LVPQSLKQLRMREQELSSSVSARLLREGTFLHPSKGITFYIRDITPEGTLQDVLLSDRRE 180

Query: 181 TQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   IY A    +  D     +++  G     +     +S   F  +T       +++ 
Sbjct: 181 PEREVIYTADRAYLIRDDEGPKMVMLAGLAQTMNTTDMRLSTTNFSDFTYDLTGLITASP 240

Query: 239 V--LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               K +    + LL           + +     E H R    L  V+  LI   A    
Sbjct: 241 QKRRKLDAIPTTELLLNTDGIAAETGQQIGEVLEEAHMRFQGPLLCVVAALIGYSALMVG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              R       I  ++ +   V    S +   + +NP   P++Y       +   +++ 
Sbjct: 301 VFSRFG-VTRQIVFAIFLLVVVKLVESAVTDPVVRNPRLWPLVYAPSVTGLAFTWILLW 358


>gi|222085453|ref|YP_002543983.1| permease protein [Agrobacterium radiobacter K84]
 gi|221722901|gb|ACM26057.1| permease protein [Agrobacterium radiobacter K84]
          Length = 391

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 138/363 (38%), Positives = 226/363 (62%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK FE YI+R +G  FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++PT+
Sbjct: 1   MKLFETYIVRRVGMMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATLILPTI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +++  G  R  +I+P++ LAI +S+F F  +N+
Sbjct: 61  IPVVLPFALVIGITQTLTAMNSDSELTVMEAAGARRSIIIRPIMILAIAISVFSFFVDNM 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EPK R   +Q+ A+A   L  + +EE  F R++D LY++I++      L+G+F+VDSRD
Sbjct: 121 VEPKARVAARQMVAEAYADLLSTVIEEKNFRRIEDGLYVQITQRMSGRILKGLFVVDSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTI 238
                IYYA+ G++D    ++++ DGEVHRK+    D+S++KF SY+      + +    
Sbjct: 181 PAFDLIYYAKEGAVDASGSSLLMRDGEVHRKTSDG-DVSVIKFDSYSFDLSDMTQSRGQA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L+A D++L FLLNP+PN+ +Y+ +    YRSE H+RLT W  P IF LIS+V A     
Sbjct: 240 TLRAGDRSLGFLLNPDPNDADYKAKPSG-YRSELHRRLTDWALPAIFALISLVIAGDAR- 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC--ISSIFLLMIKK 356
             +  ++HP+  +L+I+F + W   Y  ++IE  PY++ ILY       + +IFLL   +
Sbjct: 298 SHREARLHPMVSALTIAFALRWADFYAANQIETAPYFVGILYGINIAATLIAIFLLFRNR 357

Query: 357 KYT 359
           + +
Sbjct: 358 RMS 360


>gi|197105168|ref|YP_002130545.1| hypothetical protein PHZ_c1705 [Phenylobacterium zucineum HLK1]
 gi|196478588|gb|ACG78116.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 378

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 141/361 (39%), Gaps = 7/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+LR +    +++ L +  +A + Q L  ++L+ +  +S  + LK++   +P +
Sbjct: 1   MRLIDRYLLRQLLGPVILATLALTGVALLSQTLSGLDLIVNQRQSALVFLKVTLLAMPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P    +     L  ++   E+++    G SR  +I P + LA  ++    +    
Sbjct: 61  INMVLPIAVFVAALVALNRLHTEQEIVVCFAGGMSRWRVISPAIRLACTVAFLALLMNLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P     +++   + +  L  + + E  F      L +     +    L+ +FI   RD
Sbjct: 121 VQPAAYREMRRELFQVRTDLASTLVREGEFTEPAPGLTVYAQGVDGAGNLENLFIHQMRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIIL--NDGEVHRKSPISKDISIMKFKSYTLQTESANSST- 237
             +   Y A+ G +   +   +L   +G     S  +  ++ + F  Y     +  SS  
Sbjct: 181 DGSATTYTAEQGRVGRSQGRPVLVMRNGSNQEFS-STGVLNYLTFDEYIFDLSALTSSDE 239

Query: 238 -IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +  K +D+    L  P+    ++         +E H R++  L+ + F  +++ A    
Sbjct: 240 LVHYKPSDRYPHELFFPDLQQ-DWERRNRLDLLAEGHARISSPLYNIAFMAMALSAIIGG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R       I    + +  V      +    E   +     YL     +++    I +
Sbjct: 299 GFSRLGYGRR-IAAMGAAAAIVRILGFQVQAASEDAAWLNVFQYLIPLAATALAFRSIFR 357

Query: 357 K 357
           +
Sbjct: 358 Q 358


>gi|90423816|ref|YP_532186.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
 gi|90105830|gb|ABD87867.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
          Length = 388

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/360 (20%), Positives = 159/360 (44%), Gaps = 5/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +    +  + W+ Q L+ I+L++S  +++   L ++G  +P +
Sbjct: 1   MGSIDSYIFRTTLTSFAVILASLTGVIWITQALRGIDLMTSQGQTILTFLGLTGMAVPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +   + L  +  ++E+++++  G S + L++P +F +++++I +      
Sbjct: 61  VLVIAPIALMIAVAHTLNRLANDSEIIVMNAAGLSPLRLVRPFMFASVVVAILVGFISAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+    I +  ++    +  + L+   F +L+ +L I++ +  P   L G+FI D RD
Sbjct: 121 VAPEGLRRINRWDSEITADILANILQPGRFSQLETNLTIRVRERQPGGVLVGVFIDDRRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN-SST 237
                   A  G++  + D   ++L DG + R     +D +++ F  Y       + +  
Sbjct: 181 PNERISIIADHGTVLKNNDGSFLVLEDGTLQRFESGKRDPALVAFGRYAFDMSKFSRARD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +     ++ L  LL P P++  Y   L   +R+E H R+   ++P +F  ++        
Sbjct: 241 VSYGIRERYLWELLWPEPDDALYA-RLPNQFRAEMHDRVLAPIYPFVFAALTFAFLGLPR 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             RQ +       +++  F V              P      YL L    +  L +I + 
Sbjct: 300 TTRQSRNFSMAG-AIAAVFVVRLAGFACSIVASSTPAVAIAQYLLLAAALAGSLWVIARN 358


>gi|146340304|ref|YP_001205352.1| putative permease [Bradyrhizobium sp. ORS278]
 gi|146193110|emb|CAL77121.1| putative permease [Bradyrhizobium sp. ORS278]
          Length = 389

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 164/358 (45%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +  + +  + W+ Q L+ I+L++S  +++   L I+G +IP++
Sbjct: 1   MGSIDRYIFRTTLASFALVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITGLVIPSL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +  ++ L  +  ++E+++++  G S I L  P  +   ++++ + +  + 
Sbjct: 61  LGVIAPIALMIAVSHTLNKLATDSEIIVMNAAGMSPIRLFVPFAYATCVVALLVTLLASY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     IKQ  A+    +  + L+   F +LD +L I+I +  P   L+ I I D RD
Sbjct: 121 IAPDGLRRIKQWDAEITADVLTNILQPGRFAQLDQNLTIRIGERQPGGELKNILIDDRRD 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-- 236
            +      A+ G++    D   ++L DG + R     ++ +++ F  Y       ++   
Sbjct: 181 PKERITIIAEKGTVVKNADGSFLVLEDGNLERFEIGKREPAMVAFARYAFDMSKFSNQGR 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L   ++ +  L+ P  ++P Y+ ++   +R E H R    ++P  F  ++       
Sbjct: 241 DVTLGIRERYVWELMAPAEDDPIYK-QIPGQFRQELHDRFLAPIYPFAFAALTFAFLGAP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +       ++   FGV            + P    I Y+ LF + ++ + +I
Sbjct: 300 RTTRQSRNFS-FGSAILAVFGVRMAGFACSVMTVKTPIAALIQYVMLFGVLALSIWII 356


>gi|254477380|ref|ZP_05090766.1| permease YjgP/YjgQ [Ruegeria sp. R11]
 gi|214031623|gb|EEB72458.1| permease YjgP/YjgQ [Ruegeria sp. R11]
          Length = 388

 Score =  157 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 127/358 (35%), Gaps = 5/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  ++ Y+L      F    L +V + W+ + +   + +    +S  +  + +   +P +
Sbjct: 1   MSRYDRYVLSQYLLFFGFFALILVAVFWINRAVVLFDRLIGDGQSALVFFEFTALSLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P      +  V   +N  +EL ++  TGTS   + KP L   I+ +I + I  + 
Sbjct: 61  IRMVLPVAAFASSVWVTNRLNSESELTVLRATGTSPWQMAKPALAFGIITAIMMSILTHF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +T++Q   +    +T   L E  F      +   I + +P+ TL  +F+ D R+
Sbjct: 121 LLPTSIATLEQRETEISRNVTAKLLSEGDFLHPTRGVTFYIGRIDPDGTLNDVFLSDRRN 180

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSS 236
                 Y      +  D      ++ DG   R    ++ +S   F  ++    S    + 
Sbjct: 181 PDQVVTYTGGKAYLVRDEDRTHLVMVDGMSQRIDMQTRRLSSTIFSDFSYDISSLANKAE 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                        LL          P        E H R  + L  V   LI   A    
Sbjct: 241 EKTRNIRAIPSLELLQDRARLIAEGPYSAGALAEELHLRFARALVCVAVALIGFSALMVG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              R         ++  +   V      +   + +N    P++YL      +  L+ +
Sbjct: 301 GFSRFG-VWRQALVAFVLLIFVEGLRGVVSEPVLENADMWPLIYLPTAVGLAAALIFL 357


>gi|23008753|ref|ZP_00050063.1| COG0795: Predicted permeases [Magnetospirillum magnetotacticum
           MS-1]
          Length = 339

 Score =  157 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/339 (21%), Positives = 149/339 (43%), Gaps = 5/339 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R    +FL   + +    WV Q L+ ++LV++  ++L + L I+G  +PT+
Sbjct: 1   MTQIERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAKGQTLLVFLFITGLSLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L  +N ++EL+++   G     L++P + LA+ +S+        
Sbjct: 61  ITVIAPVALFIACVYALNRLNGDSELIVMSAAGMPPRQLLRPFVTLALAISVVTAFLTIQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ +  + +     + ++E  F  LD  +     +   + +LQG+FI D R+
Sbjct: 121 VMPSSFQELRDVLTRVRGDFVANVVKEGQFTALDSGITFHFRERGADGSLQGLFIQDKRE 180

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                +Y A+ G +     +  ++L  G +HR+   S+D SI+ ++ Y +     +   S
Sbjct: 181 AGKAVVYLAERGRVTEVDGQTYLVLEKGSIHRQQKDSRDSSIVSYERYAVDLAAFTPPDS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V K  +++   LL P+     Y  +    + +E  +RL+ W +P++   I+       
Sbjct: 241 ETVYKPRERSTLALLFPDTREGYYVLQ-KGRFWAELDERLSAWFYPLVLAFIAFDRLGDP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
              RQ + +      L +      GF      + +    
Sbjct: 300 RTTRQGRGMAVAGAVLGVVGLRIGGFDASSADVRKPGAV 338


>gi|86138693|ref|ZP_01057266.1| membrane protein, putative [Roseobacter sp. MED193]
 gi|85824753|gb|EAQ44955.1| membrane protein, putative [Roseobacter sp. MED193]
          Length = 387

 Score =  157 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 128/358 (35%), Gaps = 5/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L      F    L +V + WV + +   + +    ++  + L+ +   +P +
Sbjct: 1   MSRFDRYVLSQYLLFFSFFALILVAVFWVNRAVVLFDRLIGDGQTAIVFLEFTALALPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P         V   +   +EL ++  TGTS   + +P L   ++ ++ + +  + 
Sbjct: 61  IRMVLPVAVFASAVWVTNRLQSESELTVLRATGTSPWQMARPALAFGVITALMMSVLTHF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S +     +    +T   L E  F      +   I + + N TL  +F+ D RD
Sbjct: 121 LLPSSISQLALREQEVSRNVTAKLLTEGHFLHPVKGVTFYIRQIDSNGTLNDVFLSDRRD 180

Query: 181 TQTHKIYYAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSS 236
                 Y      +  D     +I+ +G   R    ++ +S   F  ++    S    S+
Sbjct: 181 PNQTMTYTGARAFLVRDGENTHLIMVNGMAQRLEHRTQQLSTTNFSDFSYDISSLANQST 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +    + +   LL    N              EFH R  + L  V   LI        
Sbjct: 241 AAIRNIREISSWELLQDRENISLTEGYSRGALAEEFHLRFARALICVAVALIGFSTLMLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +  R         ++  +   V      +   +  NP    ++YL  F   +I +  +
Sbjct: 301 SYSRLG-VWRQALVAFLLLILVEGLRGVVSEPVRSNPDLWLLIYLPAFIGLAIAVGFL 357


>gi|260576761|ref|ZP_05844746.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
 gi|259021013|gb|EEW24324.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
          Length = 376

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 70/367 (19%), Positives = 156/367 (42%), Gaps = 7/367 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L  +   F    L +V + W+ + +   + +    +S  + L+ S   +P+V
Sbjct: 1   MSRFDRYLLSQLLALFGFFSLVLVAVYWINRAVLLFDKLIGDGQSALVFLEFSLLTLPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   + T   +  + R++EL+++  TG S + L +PV    ++++  + +  ++
Sbjct: 61  IMLVLPFSAFVATVYGINRLTRDSELVVMQATGFSPLRLARPVAIFGLIVAAMMAVLLHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R+T+ Q + +    L   +L +  F      + + I + +P   L+ +F+ D+R 
Sbjct: 121 LVPESRATLAQRTLEVSENLAARFLMDGQFMHPAKGITLYIREISPKGELRDVFLADTRS 180

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESAN--SS 236
             +H  Y A    +         ++ DG V   +     +S+ +F  +T    +      
Sbjct: 181 PTSHATYTASRALLVKGDSGPKLVMLDGMVQNLNNKEGRMSVTRFADFTYDLATLIAGPK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +   A+  +   LL P+        E  E    + H RL Q +  +   LI   A    
Sbjct: 241 VLKRNASALSTYDLLWPSAEILQETAETPEALWFQAHNRLAQPILGLAAALIGFSALLLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLLMI 354
           A  R       I +++++   V    + ++    + P + P+ Y       ++   LL +
Sbjct: 301 AFSRFG-LWRQIAVAVALMITVQGIATTMLSLGLKQPEFWPLAYAAPLAGLAMAAGLLWL 359

Query: 355 KKKYTKI 361
            ++  ++
Sbjct: 360 AQRPQRL 366


>gi|75675869|ref|YP_318290.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
 gi|74420739|gb|ABA04938.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
          Length = 390

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 79/358 (22%), Positives = 167/358 (46%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF++  + +  + W+ Q L+ I+L++S  +++   L I+   IP +
Sbjct: 1   MGSIDKYIFRTTLASFVVVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITSLAIPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +++P    +  ++ L  +  ++E+++++  G S   L +P L+  +++++ +      
Sbjct: 61  VLIISPIALMIAVSHTLHKLATDSEIIVMNAAGLSPFRLFRPFLYATVVVALLVAFIAAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +KQ  A+    +  + L+   F +LD +L I+I +  P   L GIFI D R+
Sbjct: 121 LAPDGMRRLKQWDAEITADVLANVLQPGRFAQLDPNLTIRIRERQPGGQLAGIFIDDRRN 180

Query: 181 TQTHKIYYAQSGSIDLDRQ--AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-- 236
           +       A  G++  + Q   +IL DG + R     ++ +++ F  Y       ++   
Sbjct: 181 SNERLSIIADHGTVMKNDQGSFLILEDGHLERFETGKREPAMVAFDRYAFDMSKFSNRGH 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +V    ++ L  L+ P+  +P  + +L   +R+E H R T  ++P  F  ++       
Sbjct: 241 DVVYGIRERYLWELIAPDEKDPLVQ-QLRGQFRAELHDRFTAPIYPFAFAALTFAFLGSP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +    +  +++  FG+      +     ++P    + YL LF    I L +I
Sbjct: 300 RTTRQSRNFS-MGAAIAAVFGLRMAGFALSVMTVKSPMAALLQYLLLFGAIGISLRVI 356


>gi|86749600|ref|YP_486096.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
 gi|86572628|gb|ABD07185.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
          Length = 388

 Score =  155 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 74/360 (20%), Positives = 159/360 (44%), Gaps = 5/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +    +  + W+ Q L+ I+L++S  +++   L ++G  +P +
Sbjct: 1   MGSIDSYIFRTTLTSFAVVMASLTGVIWITQALRGIDLMTSQGQTIVTFLGLTGLAVPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +   + L  +  ++E+++++  G S + L +P ++  I ++  + +  + 
Sbjct: 61  ILVIAPIALMIAVAHTLNRLATDSEIIVMNAAGLSPLRLFRPFVYATIFVAALVTLIGSY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     I +  A+    +  + L+   F +L+ +L I++ +      L G+FI D RD
Sbjct: 121 IAPDGLRRIARWDAEITADVLANVLQPGRFAQLEQNLTIRVRERQAGGLLVGVFIDDRRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN-SST 237
                   A  G++  + D   ++L DG + R     ++ +++ F  Y       + +  
Sbjct: 181 PADRVSIIADHGTVLKNKDGSFLVLEDGHLERFQGGKQEPTLVAFSRYAFDMSKFSRARD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +     +  L  L+ P+P +P    +L   +RSE H RL   ++P  F  ++        
Sbjct: 241 VAYGIREHYLWELIWPDPKDPLLA-QLPTQFRSEMHDRLLAPIYPFFFAAVTFAFLGMPR 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             RQ +    I  ++  +F V      +       PY   + YL L    +  + +I++ 
Sbjct: 300 TTRQSRNFSMIG-AVLCAFVVRLAGFALSVVANHTPYIAGLQYLLLAVAIAASVWLIRRN 358


>gi|209548671|ref|YP_002280588.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534427|gb|ACI54362.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 393

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 128/343 (37%), Positives = 215/343 (62%), Gaps = 5/343 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 1   MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  LI+P+L LA ++S+F F  +N+
Sbjct: 61  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAVVSVFSFFVDNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP+ ++ ++Q+ A+    L  S +EE  F +LD+ LY++ISK      L+G+F+ D RD
Sbjct: 121 VEPRAKTVVRQMIAETYADLLSSVIEEKTFRKLDEGLYVQISKRMAGRMLKGLFVADERD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTI 238
                IYYA+ G++D     +I+++GEVHRK+P   ++S++ F SY+      + N    
Sbjct: 181 PAYELIYYAKEGAVDDTGTTLIMHEGEVHRKTPDG-NVSVINFDSYSFDLSDMTENRGQA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L+A+D++L FLLNP+P + +Y     ++YR+E H+RLT W+ PV+F L S+  A     
Sbjct: 240 TLRASDRDLWFLLNPDPADKDYTIR-PQSYRAELHRRLTDWILPVVFALFSLAIAGDAR- 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
             +  ++HP+  +L+ +F + W   Y  ++I+ +P YI +LY 
Sbjct: 298 SHREARLHPMVSALAYAFALRWAAFYAANQIDTDPEYIAVLYA 340


>gi|23501574|ref|NP_697701.1| hypothetical protein BR0687 [Brucella suis 1330]
 gi|254701470|ref|ZP_05163298.1| hypothetical protein Bsuib55_11511 [Brucella suis bv. 5 str. 513]
 gi|254704017|ref|ZP_05165845.1| hypothetical protein Bsuib36_08829 [Brucella suis bv. 3 str. 686]
 gi|256060812|ref|ZP_05450972.1| hypothetical protein Bneo5_10667 [Brucella neotomae 5K33]
 gi|261324804|ref|ZP_05964001.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
 gi|261752013|ref|ZP_05995722.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
 gi|261754672|ref|ZP_05998381.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
 gi|306845288|ref|ZP_07477864.1| permease YjgP/YjgQ family protein [Brucella sp. BO1]
 gi|23347487|gb|AAN29616.1| membrane protein, putative [Brucella suis 1330]
 gi|261300784|gb|EEY04281.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
 gi|261741766|gb|EEY29692.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
 gi|261744425|gb|EEY32351.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
 gi|306274447|gb|EFM56254.1| permease YjgP/YjgQ family protein [Brucella sp. BO1]
          Length = 402

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 114/364 (31%), Positives = 207/364 (56%), Gaps = 8/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--S 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY        S   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+PN+P  +   L  Y++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDPNDPMLQTRPLT-YKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +  F+L+ 
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILLT 358

Query: 355 KKKY 358
            ++ 
Sbjct: 359 GRRL 362


>gi|116251335|ref|YP_767173.1| hypothetical protein RL1569 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255983|emb|CAK07064.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 393

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 126/356 (35%), Positives = 218/356 (61%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 1   MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  LI+P+L LA ++S+F F  +N+
Sbjct: 61  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAVISVFSFFVDNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP+ ++ ++Q+ A+    L  S +EE  F +LD+ LY++IS+      L+G+F+ D RD
Sbjct: 121 VEPRAKTVVRQMIAETYADLLSSVIEEKTFRKLDEGLYVQISQRMAGRMLKGLFVADERD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTI 238
                IYYA+ G++D     +I++ GEVHRK+P   ++S++ F SY+      + +    
Sbjct: 181 PAYELIYYAKEGAVDDTGTTLIMHQGEVHRKTPDG-NVSVINFDSYSFDLSDMTESRGQA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L+A+D++L FL NP+P + +Y     ++YR+E H+RLT W+ PV+F L S+  A     
Sbjct: 240 TLRASDRDLWFLFNPDPADKDYTIR-PQSYRAELHRRLTDWILPVVFALFSLAIAGDAR- 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +  ++HP+  +L+ +F + W   Y  ++I+ +P YI +LY      S + ++ +
Sbjct: 298 SHREARLHPMVSALAYAFAMRWAAFYAANQIDTDPEYIAVLYAIPIVSSIVSIVFL 353


>gi|256369122|ref|YP_003106630.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
 gi|255999282|gb|ACU47681.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
          Length = 402

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 114/364 (31%), Positives = 207/364 (56%), Gaps = 8/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--S 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY        S   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+PN+P  +   L  Y++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDPNDPMLQTRPLT-YKAELHRRFTQWIYPLIFTMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +  F+L+ 
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILLT 358

Query: 355 KKKY 358
            ++ 
Sbjct: 359 GRRL 362


>gi|83312813|ref|YP_423077.1| permease [Magnetospirillum magneticum AMB-1]
 gi|82947654|dbj|BAE52518.1| Predicted permease [Magnetospirillum magneticum AMB-1]
          Length = 368

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 149/358 (41%), Gaps = 8/358 (2%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           ++R +    +     +  + W+ Q L+ + ++ +   S+   LK++  L+P  L ++ P 
Sbjct: 1   MMRQMLVGMIFVSAALACVLWLTQSLRFVEMIVNKGLSIGAFLKLTILLMPGFLVVIIPI 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                       +  + EL+++   G S + L +P + L + +S   ++    I P    
Sbjct: 61  SLFAVVLFTYNRLIADRELVVLRAAGLSHLALARPAVILGLAVSAVGYMLSCWIIPVTVR 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
           +  ++    +  +    L+E +F +  + L I +    PN  L G+ + D R  Q     
Sbjct: 121 SFHEMQWTIRNDIGNVLLQEGMFNKFGEGLTIYVRSRTPNGELTGLLVHDKRHAQRPVTL 180

Query: 188 YAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--TIVLKAN 243
            A+ G+         +++ +G     +P +  +S++ F +YT+   +A  +    V  A 
Sbjct: 181 MAERGALVYTEQGPRVLMVNGNRQEVTPGTGKLSLLYFDNYTVDFNTATGAKHDRVRDAR 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
           +++   LL    ++       L  ++SE H RLT  L+ + F L++          R+ +
Sbjct: 241 ERSTLELL--AIDSSMENKGELRRFKSELHSRLTSPLYSLGFPLLAAAVLLTSGFDRRGQ 298

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK-KYTK 360
               +  + ++   V        +    N  ++P++Y+      ++ L ++ +  + +
Sbjct: 299 T-AQVITATALMVAVQALALGASNLSSGNLAFVPLIYINAALPIALGLWVLARPPWPR 355


>gi|254718823|ref|ZP_05180634.1| hypothetical protein Bru83_04675 [Brucella sp. 83/13]
 gi|265983808|ref|ZP_06096543.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
 gi|306838745|ref|ZP_07471579.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
 gi|264662400|gb|EEZ32661.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
 gi|306406147|gb|EFM62392.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
          Length = 402

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 114/363 (31%), Positives = 207/363 (57%), Gaps = 8/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--S 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY        S   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+PN+P  +   L  Y++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDPNDPMLQTRPLT-YKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +  F+L+ 
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILLT 358

Query: 355 KKK 357
            ++
Sbjct: 359 GRR 361


>gi|296116656|ref|ZP_06835266.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976868|gb|EFG83636.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
           23769]
          Length = 386

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 155/357 (43%), Gaps = 6/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + Y+LR +  + + +   +  + W+ Q L  ++LV     SL + ++++  LIP+ 
Sbjct: 15  LSILDRYVLRQLLLALVATTGALALLIWLTQSLHFVSLVVGRGLSLRVFVQLTSLLIPSF 74

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +    +   +  + EL ++   G S   + +P L  A++  +  +     
Sbjct: 75  VAVILPITTFVVVQFIYQRLGSDRELTVMQAAGLSPFMMARPALLCALVSVLACYALNLW 134

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +Q   + +  +    +++ +F ++ D++ + I   +P+  L GI + D R 
Sbjct: 135 VVPTAYHGFRQYEYQIRNKMAAFLIQDGVFTQVSDNMTVYIRARDPSGMLHGIMVEDDRQ 194

Query: 181 TQTHKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN-SST 237
                   A+ GS  I  D+  I+L +G        +  ++++ F+  T+   + + + T
Sbjct: 195 PDAQATILAEEGSFVITNDQPRIVLFNGSRQEIDRKTGRLNMLSFERNTIDLSAPHGTQT 254

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               AN+  ++ LL+PN     + P   +    E  +RLT  L    F +I +++A    
Sbjct: 255 RQPDANELPITALLHPNLRQ--FSPRDEKKMIIEAWRRLTSPLCAFSFAMIGLLSALGGG 312

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             R    + P+  +L++          + +   +N   +P++++       + + M+
Sbjct: 313 FSRHGNIVRPVAATLAVVAVQALTLL-VQNLASRNLALMPLMWVSAVLPGMVCMAML 368


>gi|114766153|ref|ZP_01445157.1| Predicted permease [Pelagibaca bermudensis HTCC2601]
 gi|114541613|gb|EAU44655.1| Predicted permease [Roseovarius sp. HTCC2601]
          Length = 371

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/353 (17%), Positives = 126/353 (35%), Gaps = 5/353 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L  +   F    L +V + WV   +   + + +   S  I L+ S   +P V+ +V P 
Sbjct: 1   MLSQLMVVFGFFALVLVMVYWVNASVSLFDELITDGHSARIFLEFSLLSLPGVIALVLPM 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                   V   M+  +E+ ++   G S   L +PVL   +L+++ + +  + + P   +
Sbjct: 61  AAFGAAVYVTNRMSNESEMTVLQAGGLSPWRLGRPVLVFGVLIALMMSVLTHALVPASVA 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            ++   ++   ++    L E  F      +   I +   +  L+ +++ D R+ Q    Y
Sbjct: 121 QLRDRESEISESVAARLLHEGTFLHPARGVTFYIREITDDGELRDVYLSDRRNDQRTVTY 180

Query: 188 YAQSGSIDLDRQAIIL--NDGEVHRKSPISKDISIMKFKSYTLQTESANSS--TIVLKAN 243
            A++  +  D     L    G           +S   F   T       +S  +   +A 
Sbjct: 181 TAETAYVTRDDGGPKLTMRSGLAQEVQTKDLTLSTTNFTDLTYDISGLITSGGSERRRAR 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
                 LL           + +     E H R    L  V+  LI   A       R   
Sbjct: 241 QIPTLELLTQTEAVAEEVNDSIGEVLEEAHNRFQMPLLCVVAALIGYAALMTGTFSRFG- 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               I  ++ +   V    S I   +   P + P++YL      ++  +++ +
Sbjct: 300 VTKQIVGAIFLLVLVKLVESAITEPVRSTPAFWPLVYLPSLVGFALAAVLLWR 352


>gi|312113656|ref|YP_004011252.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218785|gb|ADP70153.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 387

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 163/357 (45%), Gaps = 6/357 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI R    + +M  + +  I W+  +L+ I L+++  ++  + L+I+   IP+++ 
Sbjct: 2   LISRYIFRQTASALIMILVSLTLIVWLTSLLREIKLLTAQGQTFLLFLQITALAIPSLIV 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P  F +   + L  ++ ++EL+++   G+S   L  P LFLA+++S+ +  +   + 
Sbjct: 62  TVAPVAFLIAALHSLNRLSGDSELIVLSAAGSSVWRLFSPYLFLAVVVSMCVLTANLFVL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     +    ++ +  +    ++   F  L+  L   +     N  L G+ + D RD +
Sbjct: 122 PNAARLLGDTVSQVRADVLSQVIQPGEFSDLEPGLTFHMRAKGDNGELLGVVVRDERDPK 181

Query: 183 THKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--TI 238
                 A+ G I  D     ++L+DG++ R+        ++ F SY       ++     
Sbjct: 182 AVTTVIAEQGQILQDGGRASMMLHDGQIIRQQAEKTAAQVVVFTSYAFDIGDFSAKKGPR 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             K  ++++  LL P+  +P Y      ++RSE H+R +  L+P+ F +I+++   +   
Sbjct: 242 ERKPRERDIGELLFPDKESPAYTN-TKGSFRSEIHERFSGALYPIAFAIIAVLYLGRPKT 300

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            R+ +    +F + ++   +       ++ + +  + + ++Y     +    L+M++
Sbjct: 301 TREGRTG-NLFTAFTLGAAIRIAGIAGVNIVGKKAWALGLIYGIPVAVIVAGLVMLR 356


>gi|254488881|ref|ZP_05102086.1| permease YjgP/YjgQ family protein [Roseobacter sp. GAI101]
 gi|214045750|gb|EEB86388.1| permease YjgP/YjgQ family protein [Roseobacter sp. GAI101]
          Length = 376

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 134/359 (37%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L      F    L +V I W+ + +   + +    ++  + L+ +   +P +
Sbjct: 1   MSKFDRYMLSQFLTLFSFFALVLVAIFWINRAVILFDRLIGDGQTALVFLEFTVLGLPRL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P         V+  M   +EL ++  TGT    L +PV    I +++ + +  ++
Sbjct: 61  ITTVLPIATFAGAAYVINRMTSESELTVLQATGTGPWRLARPVFAYGICVALMMSVLTHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  ++ + Q  A+    +T   L E  F      +         +  L+ +F+ D R+
Sbjct: 121 LVPMTKAELNQREAEISQNVTARLLTEGTFLHPTSKVTFYTRLIGNDGVLRDVFLSDRRN 180

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
                IY A    +  +      I+ DG   R     K ++  KF+ ++    +  +NS+
Sbjct: 181 PDEGVIYTAAEAYLVRNGNGTTLIMVDGLAQRLQVEGKQLATAKFRDFSFDISALVSNST 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                 +      LL    +      +       E + R    LF +I  +I        
Sbjct: 241 DESQSIDSMVTFDLLKNWDDLAAKTGQTHGDIAEEVNARFADPLFCIIAAMIGYATLIMG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              R       I I+  +   +    S ++  + Q+    P+LY+     + + L MI 
Sbjct: 301 GFSRFG-VWREIVIAFGLLIAIDGFSSTLVETVRQDASRWPVLYVPSLVGAMLVLAMIW 358


>gi|163842957|ref|YP_001627361.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
 gi|163673680|gb|ABY37791.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
          Length = 402

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 207/364 (56%), Gaps = 8/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +++LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVRVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--S 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY        S   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+PN+P  +   L  Y++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDPNDPMLQTRPLT-YKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +  F+L+ 
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILLT 358

Query: 355 KKKY 358
            ++ 
Sbjct: 359 GRRL 362


>gi|161618656|ref|YP_001592543.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
 gi|260566734|ref|ZP_05837204.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
 gi|161335467|gb|ABX61772.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
 gi|260156252|gb|EEW91332.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
          Length = 402

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 114/364 (31%), Positives = 207/364 (56%), Gaps = 8/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFVLIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--S 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY        S   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+PN+P  +   L  Y++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDPNDPMLQTRPLT-YKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +  F+L+ 
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILLT 358

Query: 355 KKKY 358
            ++ 
Sbjct: 359 GRRL 362


>gi|119383653|ref|YP_914709.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
 gi|119373420|gb|ABL69013.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
          Length = 382

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/369 (14%), Positives = 136/369 (36%), Gaps = 9/369 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YIL      F    L +V + W+ + +     + S  ++  ++L+ +   +P V
Sbjct: 1   MPRIDRYILSQFMTLFGFFALVLVSVYWINRAVSLFEQLISDGQTALVVLEFTALTLPLV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P      +      ++  +EL+ +  TG S   + +PVL   +L+++ + +  + 
Sbjct: 61  ISVVLPIAAFAASAYGTNRLSSESELVAMQATGMSPWRMARPVLVFGVLVALMVALLVHA 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R  +    A+    +T  +L    F      + + I     +  L   F+ D+R+
Sbjct: 121 VVPMARGRLADRQAEIAQNVTAQFLRAGAFQYPVRGVTLYIRDIAADGRLVDFFLEDARN 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS----PISKDISIMKFKSYTLQTES--AN 234
             +   Y +    +    +   L   +   ++       + +S+ +F        +    
Sbjct: 181 PDSQTTYTSTEALLVRTDEGPRLVMMQGMVQNLRHAGNRQSLSVTRFSELAYDLGTLIDT 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
             +        +   LL+P+P          +   +E H+RL +     +  L+      
Sbjct: 241 GESRKRDLRAYSTLRLLDPDPELLAATGATRDRALAEAHERLAKPFQAPVAALLGFGMLL 300

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF--LL 352
                R       +  ++     V +  +   +++  N    P++Y+     ++I   +L
Sbjct: 301 LGGFSRFG-VWRQVVWAVVALIVVQFLSTAAENQVAGNASRWPLIYVSPLVGAAICCAVL 359

Query: 353 MIKKKYTKI 361
            +  +  ++
Sbjct: 360 WLAARPRRL 368


>gi|254713812|ref|ZP_05175623.1| hypothetical protein BcetM6_10745 [Brucella ceti M644/93/1]
 gi|254717130|ref|ZP_05178941.1| hypothetical protein BcetM_12054 [Brucella ceti M13/05/1]
 gi|261218945|ref|ZP_05933226.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
 gi|261321556|ref|ZP_05960753.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
 gi|260924034|gb|EEX90602.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
 gi|261294246|gb|EEX97742.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
          Length = 402

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 205/364 (56%), Gaps = 8/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R   ++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAAMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--S 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY        S   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+ N+P  +   L  Y++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPLT-YKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +  F+L+ 
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILLT 358

Query: 355 KKKY 358
            ++ 
Sbjct: 359 GRRL 362


>gi|148559016|ref|YP_001258669.1| hypothetical protein BOV_0679 [Brucella ovis ATCC 25840]
 gi|254707609|ref|ZP_05169437.1| hypothetical protein BpinM_11726 [Brucella pinnipedialis
           M163/99/10]
 gi|254709808|ref|ZP_05171619.1| hypothetical protein BpinB_05961 [Brucella pinnipedialis B2/94]
 gi|256031299|ref|ZP_05444913.1| hypothetical protein BpinM2_11718 [Brucella pinnipedialis
           M292/94/1]
 gi|256159413|ref|ZP_05457191.1| hypothetical protein BcetM4_10693 [Brucella ceti M490/95/1]
 gi|256254707|ref|ZP_05460243.1| hypothetical protein BcetB_10510 [Brucella ceti B1/94]
 gi|261221887|ref|ZP_05936168.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
 gi|261315099|ref|ZP_05954296.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M163/99/10]
 gi|261317346|ref|ZP_05956543.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
 gi|265988384|ref|ZP_06100941.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M292/94/1]
 gi|265997850|ref|ZP_06110407.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
 gi|148370273|gb|ABQ60252.1| putative membrane protein [Brucella ovis ATCC 25840]
 gi|260920471|gb|EEX87124.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
 gi|261296569|gb|EEY00066.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
 gi|261304125|gb|EEY07622.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M163/99/10]
 gi|262552318|gb|EEZ08308.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
 gi|264660581|gb|EEZ30842.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M292/94/1]
          Length = 402

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 206/364 (56%), Gaps = 8/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--S 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY        S   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+ N+P  +   L  Y++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPLT-YKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +  F+L+ 
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILLT 358

Query: 355 KKKY 358
            ++ 
Sbjct: 359 GRRL 362


>gi|294852049|ref|ZP_06792722.1| hypothetical protein BAZG_00965 [Brucella sp. NVSL 07-0026]
 gi|294820638|gb|EFG37637.1| hypothetical protein BAZG_00965 [Brucella sp. NVSL 07-0026]
          Length = 402

 Score =  154 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 206/364 (56%), Gaps = 8/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--S 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY        S   
Sbjct: 181 PTLDLIYYAADGAIASMPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+ N+P  +   L  Y++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPLT-YKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +  F+L+ 
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILLT 358

Query: 355 KKKY 358
            ++ 
Sbjct: 359 GRRL 362


>gi|62289649|ref|YP_221442.1| hypothetical protein BruAb1_0706 [Brucella abortus bv. 1 str.
           9-941]
 gi|82699577|ref|YP_414151.1| YjgP/YjgQ permease [Brucella melitensis biovar Abortus 2308]
 gi|189023899|ref|YP_001934667.1| permease [Brucella abortus S19]
 gi|237815139|ref|ZP_04594137.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|254688959|ref|ZP_05152213.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 6
           str. 870]
 gi|254697093|ref|ZP_05158921.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254729989|ref|ZP_05188567.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 4
           str. 292]
 gi|256257207|ref|ZP_05462743.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 9
           str. C68]
 gi|260545599|ref|ZP_05821340.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
 gi|260754448|ref|ZP_05866796.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
 gi|260757667|ref|ZP_05870015.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
 gi|260761494|ref|ZP_05873837.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883477|ref|ZP_05895091.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
 gi|297248057|ref|ZP_06931775.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
 gi|62195781|gb|AAX74081.1| hypothetical membrane protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615678|emb|CAJ10665.1| Predicted permease YjgP/YjgQ family [Brucella melitensis biovar
           Abortus 2308]
 gi|189019471|gb|ACD72193.1| Predicted permease YjgP/YjgQ family [Brucella abortus S19]
 gi|237789976|gb|EEP64186.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|260097006|gb|EEW80881.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
 gi|260667985|gb|EEX54925.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
 gi|260671926|gb|EEX58747.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674556|gb|EEX61377.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
 gi|260873005|gb|EEX80074.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
 gi|297175226|gb|EFH34573.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
          Length = 402

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 206/364 (56%), Gaps = 8/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWAVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--S 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY        S   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+ N+P  +   L  Y++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPLT-YKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +  F+L+ 
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILLT 358

Query: 355 KKKY 358
            ++ 
Sbjct: 359 GRRL 362


>gi|13476526|ref|NP_108096.1| hypothetical protein mll7866 [Mesorhizobium loti MAFF303099]
 gi|14027287|dbj|BAB54241.1| mll7866 [Mesorhizobium loti MAFF303099]
          Length = 400

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 107/358 (29%), Positives = 209/358 (58%), Gaps = 7/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R     FL + ++ + I W  Q+L +I+LV+ S +S     +++  ++P++
Sbjct: 1   MKVVERYIMRRAFVVFLAALVWTLAIVWTTQVLAKIDLVTDSGQSSLTFFEVAALILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +     L+ MN ++EL++++  G SR T+++P++ LA+  S+F F  +N 
Sbjct: 61  IPIVVPFALVVAVAQTLSVMNSDSELVVVNAAGASRWTIVRPIMLLALAASVFSFAVDNG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I+P  R   + L A+++  L    ++E  F +++D L+++I +  P+N L GIF+ DSR+
Sbjct: 121 IDPYARQKNRALVAQSRADLLSLIIQEGTFRKIEDGLFLQIGERLPDNRLGGIFVADSRE 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
              + +YYA++GS+      + +++NDG +HRK+ ++ D+S+++F SY     +  A +S
Sbjct: 181 EGVNLVYYAKTGSVVERGGEKVLMMNDGVIHRKT-LTGDLSVIRFTSYAFDMSAFMAAAS 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L   DQ   +LLNPN N+  Y+ +  + YR+E  +R ++WL+ ++F LI++  A   
Sbjct: 240 EVTLLPKDQTTQYLLNPNVNDKLYQ-QAPQQYRAEIDQRFSEWLYSMVFALIALAVAGDA 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +  +++P+  +++IS  V W   +   K ++ P Y  ++Y      S++ +  I
Sbjct: 299 R-SHREARVNPLITAITISLFVRWLGFFAASKADEVPQYAYMVYGVPIVASAVAIWFI 355


>gi|144897578|emb|CAM74442.1| conserved hypothetical protein, membrane [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 373

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 68/358 (18%), Positives = 145/358 (40%), Gaps = 7/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y LR +    L     +  + W+ Q L+ I ++ +   S+   LK++G L+P+ 
Sbjct: 1   MTGITRYFLRQLAVGMLFVSAALTCVLWLTQSLRLIEMIVNQGISVTTFLKLTGMLMPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P             +N + EL+++   G S   L KP L LA + +I  ++    
Sbjct: 61  LVVIIPIALFAVILFTYNKLNTDRELVVLRAAGLSNWALAKPALILAGIATIMGYVLSVW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+     +++    +  ++   L+E  F +    + I +        L G+ + D R 
Sbjct: 121 IIPQTVQNFREVQWSIRNDISNLLLQEGTFNKFGKGVTIYVRTRTSEGELLGLLVHDKRS 180

Query: 181 TQTHKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSS 236
                   A+ G+         I++ +G   +    +  +S++ F SYT+    +  ++ 
Sbjct: 181 PTKPVTLMAEKGALVFTETGPRILMVNGNRQQLPDGTGQLSVLNFDSYTVDLSMSGGDNG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +    A + +++ LLN +              + E H+RLT  L+ + + LI++      
Sbjct: 241 SRFRDARELSMAELLNADEAQMGVT--DYRRAKGELHQRLTSPLYSLGYTLIALATLLTA 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              R+ + +  I  ++ +  GV      + +     P ++P LY+       +    +
Sbjct: 299 GFDRRGQTVT-ILTAIGLMVGVQAAVLGLANLSASKPIFLPFLYVLAVLPLVLGPWWL 355


>gi|254693441|ref|ZP_05155269.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 3
           str. Tulya]
 gi|261213694|ref|ZP_05927975.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|260915301|gb|EEX82162.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
           Tulya]
          Length = 402

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 206/364 (56%), Gaps = 8/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAFMFFAVLGAAVGITWAVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--S 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY        S   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+ N+P  +   L  Y++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPLT-YKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +  F+L+ 
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILLT 358

Query: 355 KKKY 358
            ++ 
Sbjct: 359 GRRL 362


>gi|17987545|ref|NP_540179.1| hypothetical protein BMEI1262 [Brucella melitensis bv. 1 str. 16M]
 gi|225852207|ref|YP_002732440.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
 gi|256044380|ref|ZP_05447284.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113223|ref|ZP_05454091.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|256264285|ref|ZP_05466817.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260563732|ref|ZP_05834218.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           16M]
 gi|265990798|ref|ZP_06103355.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994634|ref|ZP_06107191.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|17983248|gb|AAL52443.1| hypothetical membrane spanning protein [Brucella melitensis bv. 1
           str. 16M]
 gi|225640572|gb|ACO00486.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
 gi|260153748|gb|EEW88840.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           16M]
 gi|262765747|gb|EEZ11536.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001582|gb|EEZ14157.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094545|gb|EEZ18354.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
           63/9]
          Length = 402

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 205/364 (56%), Gaps = 8/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI+I++   + ++ G+FI DS D
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQIAERRADGSIGGLFIADSCD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--S 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY        S   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+ N+P  +   L  Y++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPLT-YKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +  F+L+ 
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILLT 358

Query: 355 KKKY 358
            ++ 
Sbjct: 359 GRRL 362


>gi|225627184|ref|ZP_03785222.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|260168438|ref|ZP_05755249.1| hypothetical protein BruF5_08728 [Brucella sp. F5/99]
 gi|261757900|ref|ZP_06001609.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
 gi|225618019|gb|EEH15063.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|261737884|gb|EEY25880.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
          Length = 402

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 206/364 (56%), Gaps = 8/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--S 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY        S   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+ N+P  +   L  Y++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPLT-YKAELHRRFTQWIYPLIFAMIALAIAGDF 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +  F+L+ 
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILLT 358

Query: 355 KKKY 358
            ++ 
Sbjct: 359 GRRL 362


>gi|254473376|ref|ZP_05086773.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
 gi|211957492|gb|EEA92695.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
          Length = 415

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/344 (23%), Positives = 177/344 (51%), Gaps = 6/344 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ E YI+R    +F+++   +  + W  Q L++++LV+S  ++L     I+   +P +
Sbjct: 19  MKTIERYIIRRSFTAFIVTLAAMTGVVWSTQALRQLDLVTSKGQTLLQFGYITALALPFL 78

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +    VL SM+R++EL++I+ +G S+  +++P++  ++ ++  ++     
Sbjct: 79  ILIVAPFAMMLAFIIVLNSMSRDSELIVINASGASKWLVLRPIMTFSLCVTALMYFLSIY 138

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + ++    + ++ L  + ++   F  ++++L   I   + +  L+G+ + D+RD
Sbjct: 139 LSPTGLAELRSELTRVRVDLVANIIKPGRFIPIEENLTFHIRNRSGDGVLEGLLLDDARD 198

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +T   Y A++G I    D+  +++ DG + R+    +D+SI+ F+SY     S    + 
Sbjct: 199 PETSFTYTAETGRIIEAADKTLLVMLDGTIQRRPKGGQDMSIVSFESYGFDLSSMIPEAR 258

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               KA+++    LL+ +P++ +Y  +  +    EFH RL+  L+P+ FGLI        
Sbjct: 259 EPTFKASERPTFDLLSASPDD-SYAAKHWDKLIVEFHDRLSVPLYPIAFGLIIYAFLGSP 317

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
              RQ + +  I  +++++  +          +   P   P+LY
Sbjct: 318 KTTRQDQGLA-ITTTIAVATLLRTAGFGATLIVSSAPDMFPLLY 360


>gi|325292487|ref|YP_004278351.1| permease protein [Agrobacterium sp. H13-3]
 gi|325060340|gb|ADY64031.1| putative permease protein [Agrobacterium sp. H13-3]
          Length = 389

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 128/368 (34%), Positives = 208/368 (56%), Gaps = 11/368 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR   + FL++ L ++ I W IQ+LQRINLV+ + +S+   + ++  ++PT+
Sbjct: 1   MKLLENYILRRTTQMFLVALLPVLAIIWTIQVLQRINLVTDTGQSMGSFMALATMILPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T   T+MN ++EL IID  G+SR  + +PV+ LA +LS   F   N 
Sbjct: 61  IPVVLPFALVIGITQTFTAMNNDSELAIIDAAGSSRSVMFRPVIILAAVLSALSFTITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           IEP  R++ +Q+ A A   L  S +EE  F  + D LY++I++       +G+F+ D RD
Sbjct: 121 IEPPARNSARQMVAAAYADLLSSVIEEKTFRAVQDGLYVQIAQRQGRIL-KGLFVADRRD 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES---ANSST 237
                IYYA+ G ID    ++ + DGEV +K+P    +SI+KF SY     +     +S 
Sbjct: 180 PNFDLIYYAKEGMIDESGTSLTMRDGEVQQKTPDG-KVSIVKFLSYAFDLSTMSEKQTSE 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             L   D +L FLL+P+ NN +Y+    E++RSE HKRL+ W+F   F LIS+V A    
Sbjct: 239 PSLSPGDASLGFLLSPDENNASYK-RSPESFRSELHKRLSDWMFAFAFALISLVIAADAR 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI--- 354
              +  ++HP+  +L  +F + W   Y+ ++++Q+  +IP++Y       +    ++   
Sbjct: 298 -SHREARMHPMVAALVTAFMLRWLGFYVTNQVKQSAAFIPLVYAVPGLSGAAAAFILITG 356

Query: 355 -KKKYTKI 361
            K +  KI
Sbjct: 357 RKPRMPKI 364


>gi|260432791|ref|ZP_05786762.1| permease YjgP/YjgQ [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416619|gb|EEX09878.1| permease YjgP/YjgQ [Silicibacter lacuscaerulensis ITI-1157]
          Length = 379

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 129/358 (36%), Gaps = 5/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y LR +   F    L +V + W+ + +     V S  +S  + L+ +   +PT+
Sbjct: 1   MSRFDGYFLRQLLVLFGFFTLVLVGVFWITRSVSLFERVISGGQSAMVFLEFTALTLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P             ++R +E+ ++  TG+S   L + V+   ++  + + +   +
Sbjct: 61  IRTVMPMAVFAAAVYATNRLSRESEMTVMLATGSSPWRLSRGVILFGLIAGLMMAVISVV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +++  A+    +T   L E  F      + + I + + + TL  +F+ D RD
Sbjct: 121 LRPASVEQLERRQAEVAGDVTAQLLNEGEFMHPAPGVTVYIGRIDLDGTLNEVFVSDRRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQ--AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                 Y + S  +  D     +++ DG   R       +S  +F+  +           
Sbjct: 181 RNNPATYSSTSAYLLSDDTGVHLVMVDGVALRLDREGNTLSSTQFQDASYDVSELTRKGD 240

Query: 239 VLK--ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           + +        S LL                   E H+R +     V   ++        
Sbjct: 241 IGRRSIEAVPTSELLRDLDAVAASDGYPRGELVEELHQRFSWIAICVAVAMVGYATLMLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +  R       IF + +I   +     ++   + ++    P+LY        I  + +
Sbjct: 301 SFSRFG-LWPQIFAAFTILVLLEGVRGFVSPIVIKDARLWPVLYGPALLGIVISCVFL 357


>gi|254460553|ref|ZP_05073969.1| permease YjgP/YjgQ family protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206677142|gb|EDZ41629.1| permease YjgP/YjgQ family protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 381

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 133/363 (36%), Gaps = 6/363 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+ Y+L  +   F    L +V + W+ + +   + + +  +  ++ L+ +   +P V+ 
Sbjct: 7   RFDRYVLSQLFVLFGFFSLVLVSVYWINRAVILFDRLIADGQPASVFLEFTALSLPNVIR 66

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           MV P      +  V   +   +EL+++  TG S   L +PV+    ++  F+ +    + 
Sbjct: 67  MVLPMSAFAASVYVTNRLASESELVVMQATGYSPWRLARPVVMFGFIVGTFMMVLTQYLV 126

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     ++    +   +L+   L E  F      +   I +  P   L+ +F+ D R+  
Sbjct: 127 PSSLEQLRFRENEITGSLSSQLLREGEFMNPTKGVTFYIREITPEGVLKDVFLSDRRNEG 186

Query: 183 THKIYYAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
               Y +  G +  +     +++  G  H  +  ++ ++  KF  ++    S   N  + 
Sbjct: 187 RTTTYSSVDGFLVNEPTGPKLVMVSGVTHTLNEDTRKLTKTKFTDFSYSISSLIDNPGSF 246

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               N      LL           +       E H R  Q +  V+  LI          
Sbjct: 247 YKSLNQYQTLELLLATDVVQKRSGQSTGRILEEAHSRFNQPILCVVAALIGFSTLLLGGF 306

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-FLFCISSIFLLMIKKK 357
            R       I  ++ +   V    S +   I  N    P++Y   +F   ++F ++    
Sbjct: 307 SRFG-VGRQIIGAILLLVMVKLVESIVTDPIRANAQLWPLVYAQSVFGFGAVFTMLYLAA 365

Query: 358 YTK 360
             +
Sbjct: 366 RPR 368


>gi|209885016|ref|YP_002288873.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
 gi|209873212|gb|ACI93008.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
          Length = 385

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 79/357 (22%), Positives = 164/357 (45%), Gaps = 7/357 (1%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y++R    SFL+  + +  + WV Q L+ I+L+++  +++ + L I+G  IP +  +
Sbjct: 5   IDAYVVRSTLLSFLIVLISLTGVIWVTQALRGIDLMTAQGQTVLVFLGITGLAIPVLALI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P    +  T+ L  +  ++E+++++  G S    ++P ++  ++++  +      + P
Sbjct: 65  IAPLAILLAVTHTLNRLATDSEIIVMNAAGLSPWRFLRPFMYSTVIVACLISFLAVFLAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +C   +++   +    +  + L+   F RLD  L +++ +  P   L G+FI D R+   
Sbjct: 125 ECLRALRRWHTEIGADVLANVLQPGQFIRLD-KLVLRVQERRPGGVLVGVFIDDQRNPAE 183

Query: 184 HKIYYAQSGSIDLDRQ--AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN--SSTIV 239
                AQ+G +    +   ++L+DG + R     KD  I+ FKSY       +    T  
Sbjct: 184 RINITAQNGVVQKTDKGSFLVLSDGNLQRFQADKKDPLIVAFKSYAFDMSQFSQAPQTYN 243

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             A ++ +S L++P P +       L  +R+E H RL   L+P +F +++          
Sbjct: 244 YNARERFISELISP-PKDDQVAQRSLGQFRAELHDRLLAGLYPFVFVILAFAFLGPPRTT 302

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           RQ +    I + + +   V  G           P  I + Y  L  ++++   MI K
Sbjct: 303 RQGRNFA-ISMLILVVLVVRIGGYACSTIAVSQPAAIAVQYAMLLAVAALSGWMIVK 358


>gi|260466946|ref|ZP_05813128.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259029243|gb|EEW30537.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 400

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 104/358 (29%), Positives = 207/358 (57%), Gaps = 7/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI+R     F+ + ++ + I W  Q+L +I+LV+ S +S     +++  ++P++
Sbjct: 1   MTVVERYIMRRAFVVFMAALVWTLAIVWTTQVLAKIDLVTDSGQSALTFFEVASLILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +     L+ MN ++EL +++ +G SR T+++P++ LA+  S+F F  +N 
Sbjct: 61  IPIVVPFALVVAVAQTLSVMNSDSELAVVNASGASRWTIVRPIMLLALAASVFSFAVDNG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I+P  R   + L A+++  L    ++E  F +++D L+++I +  P+N L GIF+ DSR+
Sbjct: 121 IDPYARQKNRALVAESRSDLLSLIIQEGTFRKIEDGLFLQIGERLPDNKLGGIFVADSRE 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--S 236
              + +YYA++GSI      + +++NDG +HRK+ ++ D+S+++F SY     +  S  +
Sbjct: 181 EGVNLVYYAKTGSIIERGGEKVLMMNDGVIHRKT-LTGDLSVIRFTSYAFDMSAFMSAAN 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L   DQ   +LLNP+ N+ NY+ +  + YR+E  +R ++W + ++F LI++  A   
Sbjct: 240 QVTLLPKDQTTQYLLNPSANDKNYQ-QNPQEYRAEIDQRFSEWTYSMVFALIALAVAGDA 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +  +++P+  +++IS  V W   +   K ++ P Y  ++Y      S++ +  I
Sbjct: 299 R-SHREARVNPLITAIAISLFVRWLGFFAASKADEIPQYGYMVYGVPIVASAVAIWFI 355


>gi|15888448|ref|NP_354129.1| hypothetical protein Atu1108 [Agrobacterium tumefaciens str. C58]
 gi|15156140|gb|AAK86914.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 389

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/362 (35%), Positives = 208/362 (57%), Gaps = 9/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR   + FL++ L ++ I W IQ+LQRINLV+ + +S+   + ++  ++PT+
Sbjct: 1   MKLLENYILRRTTQMFLVALLPVLAIIWTIQVLQRINLVTDTGQSMGSFMALATMILPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T + T+MN ++EL IID  G  R  + +PVL LA +LS+F F   N 
Sbjct: 61  IPVVLPFALVIGITQIFTTMNNDSELAIIDAAGAPRSVMYRPVLILAAVLSLFSFTITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           IEP  R++ +Q+ A A   L  S +EE  F  + D LY++I++       +G+F+ D RD
Sbjct: 121 IEPPARNSARQMVAAAYADLLSSVIEEKTFRTIQDGLYVQIAQRQGRIL-KGLFVADRRD 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES---ANSST 237
                IYYA+ G ID    ++ + DGEV +K+P    +SI+KF SY     +      S 
Sbjct: 180 PNFDLIYYAKEGMIDESGTSLTMRDGEVQQKTPDG-KVSIVKFLSYAFDLSTMSEKQDSE 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             L   D +L FLL+P+ NN +Y+    ET+RSE HKRL+ W+F   F LIS+  A    
Sbjct: 239 PSLSPGDASLGFLLSPDENNASYK-RSPETFRSELHKRLSDWMFAFSFALISLAIAADSR 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC--ISSIFLLMIK 355
              +  ++HP+  +L  +F + W   Y+ ++++Q+  +IP++Y        ++ F+LM  
Sbjct: 298 -SHREARLHPMVAALVTAFMLRWLGFYVTNQVKQSAAFIPLVYAVPGLSGAAAAFVLMTG 356

Query: 356 KK 357
           +K
Sbjct: 357 RK 358


>gi|126739399|ref|ZP_01755092.1| hypothetical protein RSK20926_20820 [Roseobacter sp. SK209-2-6]
 gi|126719499|gb|EBA16208.1| hypothetical protein RSK20926_20820 [Roseobacter sp. SK209-2-6]
          Length = 376

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 133/367 (36%), Gaps = 7/367 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  ++ Y+L      F    L +V + WV + +   + +    +S  + ++ +   +P +
Sbjct: 1   MSRYDRYVLSQYLLFFGFFALILVAVFWVNRAVVLFDRLIGDGQSALVFVEFTALTLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P      +  V   +   +EL ++  TGTS   + +P L   ++ ++ +    ++
Sbjct: 61  IRMVLPVAVFASSVWVTNRLQSESELTVLRATGTSPWQMARPALVFGLVAALMMSALTHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S ++    +    +T   L E  F      +   I K   + TL+ +F+ D RD
Sbjct: 121 LLPASISQLEIREREVSRNVTARLLTEGNFLHPAKGITFYIRKIESDGTLKDVFLSDRRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSS 236
             +   Y      +  D +    I+ +G   R +  ++ +S   F  ++    +    S+
Sbjct: 181 PNSSVTYTGSEAFLVRDGEKTHLIMVNGMAQRFTKDTRRLSTTNFSDFSYDISALARKSA 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                        +L       N           E H R  + L  V   LI   A    
Sbjct: 241 DRSRNIRAIPSLEILTAREQITNTDGYSAGALAEELHLRFARALVCVTVALIGFSALMLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF--CISSIFLLMI 354
              R         ++  +   V      +   + ++P   P++YL      I +   L +
Sbjct: 301 TFSRFG-VWRQALLAFLLLILVEGLRGVVSEPVLKDPTLWPLIYLPAVTGLIIAAGFLQL 359

Query: 355 KKKYTKI 361
             + T+I
Sbjct: 360 AARPTRI 366


>gi|240850232|ref|YP_002971625.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
 gi|240267355|gb|ACS50943.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
          Length = 396

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 123/358 (34%), Positives = 211/358 (58%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E YIL+ +   F    +  V ++W +QIL RIN +++S ++L  +L+ S  L+P+V
Sbjct: 1   MRIIEFYILKRVLVLFSSVMIAAVGVSWTVQILARINFLTTSKQTLLTVLQFSLSLVPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +  T +L++M++++EL +I+ +G  + T+ KP+L LAI+ S   F   N 
Sbjct: 61  VFLVIPFALVIAITTILSAMHQDSELAVINASGFPKSTVWKPILLLAIVASCISFSIANF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R  ++Q+ A A   L   ++ E  F +L ++LYI+I + NPN TL+ +FI D RD
Sbjct: 121 VVPQARLHMRQMLASAHFDLINLFINEGSFQKLANNLYIEIGERNPNGTLERLFIADQRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +T   YYA   SI  + +   ++LN+GE+ R +  +  +SI++F SYT        +  
Sbjct: 181 PKTDLFYYATDASIVSNKNGSFLVLNNGEIERVNHQNNSVSIVQFSSYTFSLGEFIPSDK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              L   D++LS+L NP+P +P Y+ + L  Y++EFH+RLTQWL+P++F LI++ AA   
Sbjct: 241 APTLYPKDRSLSYLQNPDPKDPYYQRKPL-QYKAEFHRRLTQWLYPIVFSLIALAAAGDV 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +     F ++++SF V+W   +   K + +  YIP+LY+     S+    M+
Sbjct: 300 CSHRQARHSAN-FSAIALSFLVYWIGYFFAEKAKNDLAYIPLLYIMPIGTSAFVFFML 356


>gi|163792838|ref|ZP_02186814.1| Predicted permease [alpha proteobacterium BAL199]
 gi|159181484|gb|EDP65996.1| Predicted permease [alpha proteobacterium BAL199]
          Length = 369

 Score =  150 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 137/361 (37%), Gaps = 4/361 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   I  + +   + +  + W+ Q L+ ++L+ +    +   + ++  L+PT L 
Sbjct: 2   RITRYLAGQILTAMVFIVVSMTCVIWLSQSLRFVDLIVNRGLPIPSFVYLTLMLMPTWLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P      T  V   +  + EL+++   G S + L  P + +A+   +  ++    + 
Sbjct: 62  IVLPIAAFAATVFVYNKLTNDRELVVLSAAGLSPLRLAGPAMVVAVATMLATYLMTLYLV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K+L  + +       L E  F  + D L + +        L GI + D  + +
Sbjct: 122 PMSYRGFKELQFQIRHNFDHLVLREGEFRSIGDGLTVYVRAREDTGQLAGIVVHDQSNAK 181

Query: 183 THKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                 A+ G++    +   +++ +G    +   +  +S++ F  YT+   +        
Sbjct: 182 KTVTLVAERGALITAPEGPRVVMANGSRQERDVETGRVSVLYFDRYTIDLGAMREEVQRT 241

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +   L      +P      P+  + Y +E H+RLT  L  +    I +         R
Sbjct: 242 IRDQNELFIDDLLHPTEQITDPKNFDEYIAEGHQRLTSPLLALSLTAIGVAVLLSGEFSR 301

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL-MIKKKYT 359
           + + I  I   L              + + + P  +PI++  +     + L  M +++  
Sbjct: 302 RGQTIRIITAVLLAGCA-EAMGLGSKYLVVRYPSMVPIMWFAVIVPFLLALASMTQRRLK 360

Query: 360 K 360
           +
Sbjct: 361 R 361


>gi|163868028|ref|YP_001609232.1| hypothetical protein Btr_0827 [Bartonella tribocorum CIP 105476]
 gi|161017679|emb|CAK01237.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 396

 Score =  149 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 125/358 (34%), Positives = 210/358 (58%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E YIL+ +   F    +  V ++W +QIL RIN +++S ++L  +L+ S  L+P+V
Sbjct: 1   MRIIEFYILKRVFFLFSSVLIAAVGVSWTVQILARINFLTTSKQTLLTVLQFSLSLVPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +  T  L++MN+ +EL +I+ +G  + T+ KPVL LAI+ S   F   N 
Sbjct: 61  IFLVIPFALVIAVTTTLSAMNQESELAVINASGFPKSTVWKPVLLLAIVASCISFSIANF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R  ++Q+ A A   L   ++ E  F +L ++LYI+I + NPN TL+ +FI D RD
Sbjct: 121 VVPQARLHMRQMLASAHFDLINLFISEGSFQKLANNLYIEIGERNPNGTLERLFIADQRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +T   YYA   SI  + + + +ILN+GE+ R +  +  +SI++F +YT        +  
Sbjct: 181 PKTDLFYYATKASIVSNKNGRFLILNNGEIERVNHENNSVSIVQFSAYTFSLGEFIPSDK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  L   D++LS+L NP+P +P Y+ + L  Y++EFH+RLTQWL+P++F LI++ AA   
Sbjct: 241 TPTLYPKDRSLSYLQNPDPKDPYYQRKPL-QYKAEFHRRLTQWLYPIVFSLIALAAAGNV 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +     F ++++SF V+W   +   K + +  Y+P+LY+     S     M+
Sbjct: 300 GSHRQARYCAN-FSAIALSFLVYWIGYFFAEKAKNDLAYVPLLYITPIGTSLFVFFML 356


>gi|49475339|ref|YP_033380.1| hypothetical protein BH05450 [Bartonella henselae str. Houston-1]
 gi|49238145|emb|CAF27353.1| hypothetical protein BH05450 [Bartonella henselae str. Houston-1]
          Length = 396

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 121/358 (33%), Positives = 205/358 (57%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ I   F    +  + I+W +QIL RIN +++S ++L  +L+ S  L+P+V
Sbjct: 1   MRIIELYILKRILILFSAVMIAAIGISWTVQILARINFLTTSKQTLLTILQFSISLVPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +  T+ L++MN+++EL II  +G  + T+ +P+L +A + S   F   N 
Sbjct: 61  IFLVIPFALLIAITSTLSAMNQDSELAIISASGFPKSTVWRPILLIAFVASCASFFIANF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R  ++Q+ A     L   ++ E  F +L ++LYI+I + NP+ TL  +FI D RD
Sbjct: 121 VIPQARLNMRQMLATTHYDLINLFISEGSFQKLANNLYIEIGQRNPDGTLAHLFIADQRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +    YYA   S+  + +   ++LN+GE+ R +  +  +SI++F SYT        N  
Sbjct: 181 PKIDLFYYATKASVVSNKNGHFLVLNNGEIERINHQNDSVSIVQFSSYTFSLGEFIPNDK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  L   D+ LS+L NPNP +  Y+ + L  YR+EFH+RLT+WL+P++F LI++ AA   
Sbjct: 241 TPTLYPKDRPLSYLRNPNPKDLYYQRKPL-QYRAEFHRRLTEWLYPIVFSLIALAAAGDT 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ       F +++ SF V+W   +   K + +  Y+P+LY+    +S +   M+
Sbjct: 300 RSYRQVGNSAN-FSAIAFSFLVYWIGYFAAEKAKSDLAYVPLLYIIPIGVSILVFFML 356


>gi|319784423|ref|YP_004143899.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170311|gb|ADV13849.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 400

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 102/358 (28%), Positives = 204/358 (56%), Gaps = 7/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R     F+ + ++ + I W  Q+L +I+LV+ S +S     +++  ++P++
Sbjct: 1   MKVVERYIMRRAFVVFMAALVWTLAIVWTTQVLAKIDLVTDSGQSALTFFEVAALILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +     L+ MN ++EL +++  G SR T+++P++ LA+  ++F F  +N 
Sbjct: 61  IPIVVPFALVVAVAQTLSVMNSDSELAVVNAAGASRWTIVRPIMLLALAAAVFSFAVDNG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I+P  R   + L A ++  L    ++E  F ++DD L++++ +  PNN L GIF+ DSR+
Sbjct: 121 IDPYARQKNRALVASSRADLLSLIIQEGTFRKIDDGLFLQVGERLPNNRLGGIFVADSRE 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              + +YYA++GSI      + +++NDG +HRK+ ++ D+S+++F SY     +  ++  
Sbjct: 181 EGVNLVYYAKTGSIIERGGEKVLMMNDGVIHRKT-LTGDLSVIRFTSYAFDMSAFMAAAS 239

Query: 239 VLK--ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +     DQ   +LLNP+ N+  Y+ +    YR+E ++R ++W + ++F LI++  A   
Sbjct: 240 AVTLLPKDQTTQYLLNPSANDKYYQ-QSPYEYRAEVNQRFSEWTYSMVFALIALAVAGDA 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +  +++P+  +++IS  V W   +   K ++ P Y  ++Y      S++ +  I
Sbjct: 299 R-SHREARVNPLITAITISLFVRWLGFFAASKADEIPQYAYMVYGVPIVASAVAIWFI 355


>gi|294678216|ref|YP_003578831.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
 gi|294477036|gb|ADE86424.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
          Length = 376

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 135/356 (37%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+L  +   F    L +V + WV + +   + +    ++  ++L+ +   +P V
Sbjct: 1   MKRLDRYLLSQLMAIFGFFALVLVSVYWVNRAVLLFDKLIGDGQTAWVVLEFTALTLPKV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P          +  ++  +EL+++ + G S   L +PV    ++++  +    + 
Sbjct: 61  ISLVLPVAAFAAVLYAINRLSGESELVVMQSAGASPWRLARPVAVFGLIVAALMLALVHE 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R+ + +  A+    +T  +L E  F      + + I + +    L  IF+ D+R 
Sbjct: 121 LVPASRARLAERQAQVSQDVTARFLTEGSFQTPTAGITVYIREISDLGELLDIFLYDARG 180

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   IY A+   I         ++ DG      P    +++ +F  +T     A  + +
Sbjct: 181 QRAETIYTAEKALIVPSEAGPKLVMFDGTAQTLRPSDGSLALTRFSDFTYDLGGAIGTGL 240

Query: 239 VLKAN--DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + +  +     L+ P P         +     E + RL Q L   +  LI+  A    
Sbjct: 241 RGRIDWEEVPSRDLIAPGPELLAATGSTVAAAHLELNDRLAQPLMAPVAALIAAAAMMLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
              R       I +++    G+    +        +P    + Y+      +   L
Sbjct: 301 GFSRLG-LWRQIGLAVLALIGLQSLSNVATSMTRADPALWALHYMPALAGLAGVAL 355


>gi|319408320|emb|CBI81973.1| conserved membrane hypothetical protein [Bartonella schoenbuchensis
           R1]
          Length = 396

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 113/358 (31%), Positives = 205/358 (57%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ +   F    +  + I+  +Q+L RI+ +++S ++   +L  S  L+P V
Sbjct: 1   MRIIELYILKRVFILFSAVMVAAIGISLTVQVLARIDFLTTSGQTFLTVLYFSSLLVPPV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ PF   +  T +L++MN+++EL II  +G S+ T++KP+L LAI  +   F   N 
Sbjct: 61  ISLIIPFALVIAITTILSTMNQDSELAIISASGFSKNTVLKPILLLAIFTACTSFSIANF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R  ++Q+ A     L   ++ E  F  L ++LYI+I +  P+ T+  +FI D RD
Sbjct: 121 VAPQARLNMRQMLANTHSDLINLFIREGSFQALTNNLYIEIGERYPDGTIGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
           ++   +YYA+ G+I  + +   ++LNDGE+ R +  +  +SI+KF SYT        N+ 
Sbjct: 181 SKIDLLYYAKKGAIVSNKNGNFLVLNDGEIERVNYQNDSVSIIKFNSYTFSLSEFIPNNG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              +   D+ LS+LL+P+P +P Y+      Y++EFH+RLT+WL+P++F LI++ AA   
Sbjct: 241 VPTIYPKDRPLSYLLHPDPYDPYYQ-RNPLQYKAEFHRRLTEWLYPIVFALIAVAAAGDA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ      +F +++ S  ++W   +   K + +  Y+P+LY+    +S +   M+
Sbjct: 300 RSHRQAHTSAIVF-TITFSLLIYWIEYFFAEKTKNDLTYVPLLYITPIGVSVLIFFML 356


>gi|154253775|ref|YP_001414599.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154157725|gb|ABS64942.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 388

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 156/375 (41%), Gaps = 17/375 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +KS   Y+       F+++ + +  I W+ Q L+ ++++ +  ++L    +++   +P+ 
Sbjct: 2   LKSLSRYLFFQTLGPFVVASVVLSGIIWLTQALRMLDVLITQGQTLLTFFELTVLALPST 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P          L  +  ++E++++   G SR  +  P+L +A+  S+ +      
Sbjct: 62  LMIVLPISLFCAVLYSLHKLISDSEIVVMFAAGVSRWVVALPLLAIAMGTSVIILAFSIY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K    + +  +  + + E  F      L + + +   + T  G+ + D R 
Sbjct: 122 IAPAGMRELKSRLVEIRSDVATAMIREGTFSNPATGLTVFVRERAADGTTYGVLVHDGRI 181

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDIS---IMKFKSYTLQTES--A 233
                 Y A++GS+    +   +++ +G + R S    + S    + F  YT        
Sbjct: 182 PSAPVTYMAETGSLVRGPNGPLLVMFNGNIQRASRSGTETSAATFLYFDKYTYDLSQYME 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +  T+  +  ++    L+NP  ++  Y  +  +   ++ H+RL +  +PV+  LI + A 
Sbjct: 242 DEPTLSYEGRERYFHELVNPASDDL-YGQQNRDKLLADAHERLVEGFYPVMLTLIGLAAL 300

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL- 352
                 R+         + +++  V      + + +  N    P++Y+    +  I L  
Sbjct: 301 LPAPFNRRGYASRMATAA-AMALTVRILGFALSNAVGNNLALAPLMYILPIAVCGICLAV 359

Query: 353 -------MIKKKYTK 360
                  ++ ++ ++
Sbjct: 360 IAGVRFDILWRRLSR 374


>gi|114328863|ref|YP_746020.1| hypothetical protein GbCGDNIH1_2199 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114317037|gb|ABI63097.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 400

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 159/358 (44%), Gaps = 7/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + + + Y++R +  + +     +V + W+ Q L+ I LV +   S+ + LK++G LIP+ 
Sbjct: 18  LTTLDRYVMRQLLVALVACTCGLVALIWLTQSLRFIELVVNRGLSVFVFLKLTGLLIPSF 77

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +    V   +  + EL ++   G S   + +P L +A+L  +  F+    
Sbjct: 78  VAVIIPITTYVVVQFVYQRLAGDRELTVMRAAGLSSWVMARPALLVALLTMLLSFVLNLW 137

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P   S  ++   + +  +    L++ +F  + DD+ + I K + + TL GI I D+R 
Sbjct: 138 IVPAAFSAFREYQWEIRNKMAAFLLQDGVFTPVSDDMIVYIRKRDADGTLHGILIDDARK 197

Query: 181 TQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA-NSS 236
             +H    AQ G ++        ++L  G        +  ++I+ F   T+  E +    
Sbjct: 198 ADSHATIIAQRGRMEQGSNGAPQVVLESGSRQELDRHTGRLNILTFNENTISLEQSGKDE 257

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                AN+ +L+ LL+P+P+        +   R E H+RL+  L  + F ++++V+    
Sbjct: 258 QRSRDANEMSLTELLHPDPSQVMA--RDIPKLRVEAHRRLSGPLNVLSFAVVALVSVLNG 315

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           A  R    + P   +  +   +      + +   + P  IP++++           ++
Sbjct: 316 AFRRHGGLLRPGVAA-LVVVALLAVGLAVANAAAKLPQLIPLIWIAAVAPGMAGAWIM 372


>gi|115525294|ref|YP_782205.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisA53]
 gi|115519241|gb|ABJ07225.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
           BisA53]
          Length = 388

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 69/359 (19%), Positives = 158/359 (44%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +    +  + W+ Q L+ I+L++S  +++   L ++   +P +
Sbjct: 1   MGSTDSYIFRTTLASFAVILASLTGVIWITQALRGIDLMTSQGQTILTFLGLTSMAVPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +   + L  +  ++E+++++  G S + L++P ++ A ++++ +      
Sbjct: 61  ILVIAPLALMIAVAHTLNRLATDSEIIVMNAAGLSPLRLMRPFMYAAAVVALLVGFIGAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+    I    ++    +  + L+   F +L+ +L I++ +  P   L G+FI D RD
Sbjct: 121 VAPEGLRRINNWDSEITADILANILQPGRFAQLEQNLTIRVRERQPGGLLVGVFIDDRRD 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSST 237
            +      A  G++    D   ++L DG + R     +D +++ F  Y       + +  
Sbjct: 181 PKERVSIIADHGTVLKNADGSFLVLEDGTLQRFELGKRDPALVAFGRYAFDMSKFSKARD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +     ++ L  L+ P P +P     L   +R+E H RL   ++P  F  ++        
Sbjct: 241 VTYGIRERYLWELIWPQPGDPLVA-RLPNQFRAEMHDRLMAPIYPFAFAALTFAFLGMPR 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             RQ +       +++  F +             NP++  + YL L    ++ + +  +
Sbjct: 300 TTRQSRNFSVAG-AIAAVFLLRLAGFACSIMTNTNPWFAALQYLLLAGAIALGMWISAR 357


>gi|99080790|ref|YP_612944.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
 gi|99037070|gb|ABF63682.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
          Length = 379

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 126/359 (35%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  ++ Y+L      F    L +V + W+ + +   + +    +S+   L+IS   +P +
Sbjct: 1   MSRYDRYVLSQYLLFFGFFALILVAVFWINRAVSLFDWLIGDGQSVLAFLEISALSLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P      T  V   +N  +EL ++  TG+S   L +P +   +L +  +      
Sbjct: 61  VRMVLPLAAFAATVWVTNRLNSESELTVLRATGSSPWQLARPAMVFGLLSAAMMSALSLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + ++   A+   +++   L    F    + +   I    P+ TLQ +F+ D RD
Sbjct: 121 LLPASLAQMQFREAELSRSVSAKLLNAGSFLHPSEGITFFIGSIEPDGTLQNVFLTDQRD 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                 Y +    +    D   +IL DG   RK   +  +S   F  ++      + +  
Sbjct: 181 PSVEITYTSDRAYLVREDDEAHLILVDGLAQRKEAHNDRLSTTAFSDFSYPLGDLSPARA 240

Query: 239 --VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  +     LL    +              E H R  +        +I +      
Sbjct: 241 AGARPLRNIPTLDLLRERASITEEEGHSAGAQAEELHLRFARAAVTFAVVMIGVSTLLMG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              R       +  +  +   +      +   + +N    P++YL       I +L + 
Sbjct: 301 GFSRFG-IWKQVLGAFVLLILIEGMRGVVADPVRENAAMWPLIYLPATLGVMISVLFLH 358


>gi|304392005|ref|ZP_07373947.1| permease YjgP/YjgQ family protein [Ahrensia sp. R2A130]
 gi|303296234|gb|EFL90592.1| permease YjgP/YjgQ family protein [Ahrensia sp. R2A130]
          Length = 402

 Score =  147 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 69/359 (19%), Positives = 155/359 (43%), Gaps = 7/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   E Y+ +        +   +V + WV++ +Q ++++ S  + +   L I+   +P++
Sbjct: 3   LSLLERYVFKKALVMVATALAGLVGVIWVVRAVQEVDVIMSKGQGIMTYLTITTLGVPSL 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +     ++++N  +E++++  +G SR +L +P L+LA L++I ++     
Sbjct: 63  IAAVAPLALMIGMVRTISALNDESEMVVMHASGASRWSLARPFLWLAGLMAIMIYFLSLY 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + +++     +  L    +++  F +L   L   I+   P   L+G+FI D+RD
Sbjct: 123 GGPHSLTKMRETVNTMRADLISVVVKDGEFQQLGGGLMFHIATRLPGGELKGVFITDTRD 182

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              H  Y A SG+I    +   ++L  G+V R +  + + S + F SY     + +  T 
Sbjct: 183 ENEHLTYLADSGTISKIGEDAYLVLRQGQVQRTTVKTNNSSFIDFDSYAFNLSTFSGGTG 242

Query: 239 VLKAN---DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             K+    +   S L +P+P +  ++      +R EFH R T  L+      I I+    
Sbjct: 243 DGKSRSRGELRTSELFSPDPADEMFK-RAPHRFRVEFHTRFTSGLYAF-MVAIVILVCMG 300

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                ++     I  ++ +   +      + + ++  P     ++            ++
Sbjct: 301 NPQSHRQGLTVLITSTVVLVILLRGAGILVENNLKATPLLWVAVWGIPLLAIGNSFRLL 359


>gi|83953614|ref|ZP_00962335.1| membrane protein, putative [Sulfitobacter sp. NAS-14.1]
 gi|83841559|gb|EAP80728.1| membrane protein, putative [Sulfitobacter sp. NAS-14.1]
          Length = 376

 Score =  145 bits (366), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 130/359 (36%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L      F    L +V I W+ + +   + +    ++  + L+ +   +P +
Sbjct: 1   MAKFDRYMLSQFLILFSFFALILVAIFWINRAVVLFDRLIGDGQTALVFLEFTVLGLPKL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P      +  V+  M   +EL ++  TGTS   L +PV    + ++I + +  ++
Sbjct: 61  ITTVLPIATFAGSVYVINRMTSESELTVLQATGTSPWRLARPVFVYGLCVAIMMSVLTHL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     + +  A+    +T   L E  F      +       + +  L+ +F+ D R+
Sbjct: 121 LLPLSNGQLSEREAEISQNVTARLLTEGTFLHPTSKVTFYTRVIDADGVLRDVFLSDRRN 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
                IY A    +    D   +I+ DG   R     K +S  KF+ ++    S  ++  
Sbjct: 181 PDESVIYTASEAYLIRNGDGTTLIMVDGMAQRLEMAGKRLSTAKFRDFSFDISSLVSSDK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                 +    + +                    E  +R +   F +I  +I        
Sbjct: 241 PRTQSIDAMTTAEMFAQWDQLETITKSSAGDIAEELAQRFSSAAFCMIAAMIGYATLVLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              R       I I+  +   +      ++  +  +    P+L+L     + I + MI 
Sbjct: 301 GFSRFG-VWREIVIAFGLLIALDGLRGTLVDTVRDDASRWPLLFLPSLIGAVIVIGMIW 358


>gi|77463457|ref|YP_352961.1| permease [Rhodobacter sphaeroides 2.4.1]
 gi|77387875|gb|ABA79060.1| Predicted permease [Rhodobacter sphaeroides 2.4.1]
          Length = 376

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 136/367 (37%), Gaps = 7/367 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L  +   F    L +V + W+ + +   + + S  +S  + L+ S   +P V
Sbjct: 1   MARFDRYLLSQLVALFGFFSLVLVLVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P      T  V+  +++ +EL+++  TG S   L +PV++  +++++ + +  N+
Sbjct: 61  IRLVLPLSAFAATIYVVNRLSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R+T+   SA+     T  +L +  F    D + + I +      L+ + +VD RD
Sbjct: 121 LVPASRATLSARSAEISQNATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                 Y A+   +         ++ DG     +   + + + +F   T         S 
Sbjct: 181 PARSTAYTARRALLVRTDTTPKLLMIDGSAQTLTREGRRLELTRFDDVTYDLGAFMTGSG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  +     LL P                 E H R+ Q        LI   A    
Sbjct: 241 PKRRVLEELPTMTLLAPTAEVLEETRSTRAAALYEGHSRIGQPFLGFASSLIGFAALLLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF--CISSIFLLMI 354
           +  R       I  ++ +   V             +    P+ Y          I LL I
Sbjct: 301 SFSRFG-LWWQILFAVLLLIVVQTINVAASGVGVTDEQLWPLAYAAPVTGFAIGILLLWI 359

Query: 355 KKKYTKI 361
            ++  ++
Sbjct: 360 GQRPRRL 366


>gi|126462312|ref|YP_001043426.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103976|gb|ABN76654.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 376

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 137/367 (37%), Gaps = 7/367 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L  +   F    L +V + W+ + +   + + S  +S  + L+ S   +P V
Sbjct: 1   MARFDRYLLSQLVALFGFFSLVLVLVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P      T  V+  +++ +EL+++  TG S   L +PV++  +++++ + +  N+
Sbjct: 61  IRLVLPLSAFAATIYVVNRLSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R+T+   SA+     T  +L +  F    D + + I +      L+ + +VD RD
Sbjct: 121 LVPASRATLSARSAEISQNATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                 Y A+   +         ++ DG     +   + + + +F   T         S 
Sbjct: 181 PARSTAYTARRALLVRTDTTPKLLMIDGSAQTLTREGRRLELTRFDDVTYDLGAFMTGSG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  +     LL P                 E H R+ Q        LI   A    
Sbjct: 241 PKRRVLEELPTMTLLAPTAEVLEETRSTRAAALYEGHSRIGQPFLGFASSLIGFAALLLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF--CISSIFLLMI 354
           +  R       I  ++ +   V             +    P+ Y       +  I LL I
Sbjct: 301 SFSRFG-LWWQILFAVLLLIVVQTINVAASGVGVTDEQLWPLAYAAPVTGFVIGILLLWI 359

Query: 355 KKKYTKI 361
            ++  ++
Sbjct: 360 GQRPRRL 366


>gi|49474101|ref|YP_032143.1| hypothetical protein BQ04630 [Bartonella quintana str. Toulouse]
 gi|49239605|emb|CAF25962.1| hypothetical protein BQ04630 [Bartonella quintana str. Toulouse]
          Length = 396

 Score =  145 bits (365), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 121/358 (33%), Positives = 205/358 (57%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ I   F    +  + I+W +QIL RIN +++S ++L  +L+ S  L+P+V
Sbjct: 1   MRIIELYILKRILILFSAVMIAAISISWTVQILARINFLTTSRQTLLTVLQFSLSLVPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +  T+ L++MN+++EL II   G  + T+ KP+L LA++ S   F+  N 
Sbjct: 61  IFLVIPFALVIAITSTLSAMNQDSELAIISAAGFPKSTVWKPILLLALIASCASFLIANF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R  ++Q+ A A   L   ++ E  F +L ++LYI+I + NP+ TL  +FI D RD
Sbjct: 121 VAPQARFHMRQMLANAHSDLINLFINEGSFQKLANNLYIEIGERNPDGTLGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +    YYA   SI  +     ++LN+GE+ R +  +  +SI++F  YT        N  
Sbjct: 181 PKIDFFYYATKASIVSNKSGNFLVLNNGEIERINHQNDSVSIVQFSFYTFSLSEFIPNDK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  +   D+ LS+LLNP+P +P Y+   L  YR+EFH+RLT+WL+ ++F LI++ AA   
Sbjct: 241 TPTIYPKDRPLSYLLNPDPKDPYYQRRPL-QYRAEFHRRLTEWLYSIVFSLIALAAARDA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              R+ +     F +++ S  V+W   +   K + +  Y+P+LY+    +S +   M+
Sbjct: 300 RSYRKTRNFAN-FSAIAFSLLVYWIGHFFAEKAKSDLAYVPLLYITPIGVSILVFFML 356


>gi|254437787|ref|ZP_05051281.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
           307]
 gi|198253233|gb|EDY77547.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
           307]
          Length = 379

 Score =  145 bits (365), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 135/359 (37%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L  +   F    L +V I W+ + ++  + + +  +S  + L+++   +P+V
Sbjct: 1   MARFDRYMLSQLLVLFGFFSLILVVIYWINRAVRLFDRLIADGQSAWVFLELTSLSLPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P    +    V   M+ ++EL ++  TG S   L +P+++  ++++  + +  +I
Sbjct: 61  IRIVLPLSAFVAAVYVTNRMSSDSELTVVQATGYSPFRLARPIIYFGLIVAALMSVLTHI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +    ++    +T   L    F    DD+   I +  P+  +  IFI +S D
Sbjct: 121 LVPLSTEQLTSRQSEISQTMTARLLTPGEFLTPSDDVTFYIRELTPSGEMLDIFISESTD 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST- 237
                 Y A    +    +   +++ DG        +  +    F  +     +  +   
Sbjct: 181 PTRRTTYTAARAYLVRTENGPQLVMIDGLTQTLDHETNRLLTTGFADFVYDVGALMNDEF 240

Query: 238 -IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              +  N  +   LL P+        +     +   H R+ Q     + GL+   A    
Sbjct: 241 VRRVSVNGLSTLALLRPSAAAIAATNKTGYELKLRGHDRIAQAALGFVAGLVGFSALVVG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              R       I  ++ +   +    S        NP   P +YL       I  +++ 
Sbjct: 301 GFSRFG-LWRNILFAVGLVILLKILESTGTSIARANPALWPFVYLAGIGGVVISAILLH 358


>gi|259419313|ref|ZP_05743230.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
 gi|259345535|gb|EEW57389.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
          Length = 379

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 125/359 (34%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  ++ Y+L      F    L +V + W+ + +   + +    +S+   L+IS   +P +
Sbjct: 1   MSRYDRYVLSQYLLFFGFFALILVAVFWINRAVSLFDWLIGDGQSVLAFLEISALSLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P      T  V   +N  +EL ++  TG+S   L +P +   +L +  +      
Sbjct: 61  VRMVLPLAAFAATVWVTNRLNSESELTVLRATGSSPWQLARPAMAFGVLSAAMMSALSLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + ++   A+   +++   L    F      +   +   +P+ TL  +F+ D RD
Sbjct: 121 LLPASLAQMQLREAELSRSVSAKLLNAGNFLHPSAGITFFVGSIDPDGTLNNVFLTDQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQ--AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                 Y +    +  +     +IL DG   RK   +  +S   F  ++      + +  
Sbjct: 181 PSVEITYTSDRAYLVREDDMAHLILVDGLAQRKEAHNDRLSTTAFADFSYPLGDLSPART 240

Query: 239 V--LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +      +     LL                   E H R  +        +I +      
Sbjct: 241 MGARPLRNIPTLDLLRDRDEITQNEGHSAGAQAEELHLRFARAAVTFAVVMIGVSTLLLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              R       + ++  +   +      +   +  N    P++YL       I ++ + 
Sbjct: 301 GFSRFG-IWKQVLVAFVLLILIEGMRGVVSEPVRDNAQMWPLIYLPAAIGVLISMIFLH 358


>gi|114569777|ref|YP_756457.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
 gi|114340239|gb|ABI65519.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
          Length = 373

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 136/367 (37%), Gaps = 10/367 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y    +   F+ +      +A + Q L  ++LVS  +E+    +K++   +P +
Sbjct: 1   MILVQRYFFNQLLWPFMTAIAAFAGLALLTQSLSNVDLVSGYSETALTFIKVTALALPHL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +   + L  +  ++EL+I    G SR  L+ P++ L + + I       +
Sbjct: 61  TALLVPIALFVAVLSSLNRLTGDSELVIASAAGVSRFGLLSPIMRLGVYVLIANLAVNLL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P     +++     +  +  S +    F +L   + I   +   +  +Q I I DSR 
Sbjct: 121 LQPVAYREMRRSLHTLRSDVAASLVTPGAFSQLGQGVTIYARERGRDGRMQDILIHDSRG 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSS 236
           T     Y A+ G +    DR A++L DG + +      ++    F  Y          + 
Sbjct: 181 TDGASTYSAREGVVVRSGDRSAMVLIDGNLQQIDSAG-ELYYANFDRYEFDLGEFVGPAD 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +  K +D+ L  LL P+           E   +E H RL+  L+ + F LI+       
Sbjct: 240 AMFFKESDRYLHELLWPSAAEVARTG-GPERAWAEAHYRLSAPLYNLAFALIAAACFLAG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC---ISSIFLLM 353
              R       + I++     +      +      +       YL        +   +  
Sbjct: 299 DHSRMGYGRR-VMIAVGAGLTLRLVGFAMQSASADDAAMNVAQYLVPVFGMVGAVAVIYW 357

Query: 354 IKKKYTK 360
             +   +
Sbjct: 358 PARNRPR 364


>gi|83942394|ref|ZP_00954855.1| membrane protein, putative [Sulfitobacter sp. EE-36]
 gi|83846487|gb|EAP84363.1| membrane protein, putative [Sulfitobacter sp. EE-36]
          Length = 376

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 128/359 (35%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L      F    L +V I W+ + +   + +    ++  + L+ +   +P +
Sbjct: 1   MAKFDRYMLSQFLILFSFFALILVAIFWINRAVVLFDRLIGDGQTALVFLEFTVLGLPKL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P      +  V+  M   +EL ++  TGTS   L +PV    + ++I + +  ++
Sbjct: 61  ITTVLPIATFAGSVYVINRMTSESELTVLQATGTSPWRLARPVFVYGLCVAIMMSVLTHL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     + +  A+    +T   L E  F      +       + +  L+ +F+ D R+
Sbjct: 121 LLPLSNGQLSEREAEISQNVTARLLTEGTFLHPTSKVTFYTRVIDADGVLRDVFLSDRRN 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
                IY A    +    D   +I+ DG   R     K +S  KF+ ++    +  ++  
Sbjct: 181 PDEGVIYTASEAYLIRNGDGTTLIMVDGMAQRLEMAGKRLSTAKFRDFSFDISALVSSDK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                 +    + +                    E   R     F +I  +I        
Sbjct: 241 PRTQSIDAMTTAEMFAQWDQLETITKSSAGEIAEELTARFASAAFCMIAAMIGYATLVLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              R       I I+  +   +      ++  +  +    P+L+L     + I + MI 
Sbjct: 301 GFSRFG-VWREIVIAFGLLIAIDGLRGTLVETVRDDASRWPLLFLPSLIGAVIVIGMIW 358


>gi|254294286|ref|YP_003060309.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
 gi|254042817|gb|ACT59612.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
          Length = 385

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/358 (20%), Positives = 148/358 (41%), Gaps = 7/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+   + R+ +     +V IA + Q L +I+L+  + +S    L +S    P V
Sbjct: 1   MDRFQQYLFGNVLRTMVSIVGGLVLIALLTQGLTQIDLIVENRQSAFTFLYVSMLAAPQV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L   +R++E+++    G SR+ +  PVL +A + ++        
Sbjct: 61  IGLLLPIALFVAAIATLNRAHRDSEIVVAQAAGMSRLQIASPVLRIAAIAALLHLCINLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P     +++    A+  L  + ++   F     +L + I K      L+ + I D+RD
Sbjct: 121 VQPASYREMRETLTSARTDLAATLVKPGEFNSPAHNLTVYIGKSLGGGELRTLLISDARD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              +  Y A++G++         ++ +  V +    +  +    F  Y  +  +   S  
Sbjct: 181 PDANTTYIARTGAVTEVEGVPAILMRNARVQKID-GNGQLWDGTFDQYIYELAAFVDSDT 239

Query: 239 VL--KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               KA+D+ L  LL P+ NN  Y  +  E + +E H RL   L  +   ++++VA    
Sbjct: 240 SYVLKASDRFLHELLYPDFNNF-YDRDNAEKFYAEGHSRLALPLMNMFMAMLAVVAVLGG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              R+  +   I ++  I           +   E NP    I YL      +I   M 
Sbjct: 299 DFSRRGYQTR-ISVATGIGLFAQLLALASVSVGEDNPKLNFIQYLIPILSFTILAFMF 355


>gi|163739704|ref|ZP_02147112.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
 gi|161386934|gb|EDQ11295.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
          Length = 376

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 128/351 (36%), Gaps = 5/351 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L      F    L +V + W+ + +   + +    +S  + L+ +   +P ++ MV P 
Sbjct: 1   MLSQYLLFFGFFALILVAVFWINRAVVLFDRLIGDGQSALVFLEFTALALPNLVRMVLPV 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                +  V   +N  +EL ++  TGTS   + KP +   ++ ++ + I  +++ P   +
Sbjct: 61  AAFAASVWVTNRLNSESELTVLRATGTSPWQMAKPAMVFGLITAVMMSILTHVLLPASIA 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
           T++Q  ++    +T   L E  F      +   I + +P+ TL  +F+ D R+      Y
Sbjct: 121 TLEQRESEVARNVTAKLLSEGDFLHPARGVTFYIGRIDPDGTLNDVFLSDRRNAAESVTY 180

Query: 188 YAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSSTIVLKAN 243
                 +  D +    ++ DG   R +  ++ +S   F  ++    S    +        
Sbjct: 181 TGGKAYLVRDGERTHLVMVDGMSQRINTETQRLSSTIFSDFSYDISSLANKAEEKTRNIR 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
                 LL          P        E H R  + L  V   LI   A       R   
Sbjct: 241 AIPSLELLGDRAKLVADGPYSAGALAEELHLRFARALVCVAVVLIGFAALMLGGFSRFG- 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                 ++  +   V      +   + QN    P++Y+       + L+ +
Sbjct: 300 VWRQALLAFVLLIFVEGLRGVVSEPVLQNAELWPLIYIPTLIGLLVGLVFL 350


>gi|319407069|emb|CBI80706.1| putative permease, YjgP/YjgQ family [Bartonella sp. 1-1C]
          Length = 382

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 125/358 (34%), Positives = 202/358 (56%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ I   F    L  V I+W +QIL RIN ++++ ++   ++  S  LIP+V
Sbjct: 1   MRILELYILKRIFILFSAVLLGAVGISWTVQILARINFLTTNGQTFLTIVYFSSLLIPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ PF   +  T +L++MN+++EL +I  +G S+  + KP+L LA+L S   F   N 
Sbjct: 61  TSLIIPFALVVAITTILSTMNQDSELAVISASGISKNIVWKPILLLAVLASFTSFSITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  R  ++Q+ A +   L   ++ E  F  L  +LYI+I + N N T+  +FI D RD
Sbjct: 121 IAPHARLNMRQILASSHSDLISLFIREGSFQELTKNLYIEIGERNANGTIGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            Q    YYA  G+I  +   + +ILNDGE+ R    + ++SI+KF S+T        N  
Sbjct: 181 PQLGLFYYATKGAIVNNKKGKFLILNDGEIERIDYKNDNVSIIKFSSHTFSLSEFIPNKK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  +   D+ LS+L NPNPN+ +Y+ + L  YR+E H+R T+ L+P++F LI ++A    
Sbjct: 241 TPNIYPKDRPLSYLFNPNPNDSHYQRKPL-QYRAELHRRFTECLYPIVFALI-VIAIAGD 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           A   ++ +I   F +++ S  ++W   +   K E NP YIP+LY+    IS +   M+
Sbjct: 299 AHSYRQARISATFSTITFSLLIYWLGYFFARKTENNPSYIPLLYIIPIGISLLIFFML 356


>gi|302383687|ref|YP_003819510.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194315|gb|ADL01887.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 376

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 140/358 (39%), Gaps = 4/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R I    L +C  +  I  + Q L ++ ++    +S+ +LLK++   +P +
Sbjct: 1   MTLIQKYLFRQISLPVLAACASLAGIGILSQTLDQLEIIVERGQSVWVLLKLTLLAVPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +     LT + R  EL     +G SR  +I P  +LA+ +++ + ++  +
Sbjct: 61  FSVILPIGLFVGALIALTRLQREQELTAAYASGMSRWQMIAPGAWLAVCVAVVMLLTNVV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I+P  + T ++ +   +  L    +EE  F +  + L + + +   N  L+ +FI     
Sbjct: 121 IQPWSQRTAREQAFSIRTDLAALLVEEGRFVQGPNGLTVYVQQIEQNGLLKNLFIYIQNG 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
            +      +++    +D Q ++       ++   +  +  + F  Y         +   I
Sbjct: 181 DEVTTWDASEARFGRVDGQPVLTMKQGSWQQYSSAGVLQQLVFDGYVFPLGQYVTDDQKI 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             K  D  +  L NP  +             +E H RL+  L+ +    +++ A    A 
Sbjct: 241 RYKPADLWMGQLFNPT-DALVRDTGSRGELLAEAHSRLSSPLYALTAMAMALTAILGGAF 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            R       I  +      V      ++     N +     Y+     +++ L ++ +
Sbjct: 300 SRTGY-SARIAKASGAFLLVRVVGYAVVAASAWNGWLNVFQYVLPIVATAVALRLLFR 356


>gi|163743163|ref|ZP_02150545.1| hypothetical protein RG210_14720 [Phaeobacter gallaeciensis 2.10]
 gi|161383580|gb|EDQ07967.1| hypothetical protein RG210_14720 [Phaeobacter gallaeciensis 2.10]
          Length = 376

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 128/351 (36%), Gaps = 5/351 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L      F    L +V + W+ + +   + +    +S  + L+ +   +P ++ MV P 
Sbjct: 1   MLSQYLLFFGFFALILVAVFWINRAVVLFDRLIGDGQSALVFLEFTALALPNLVRMVLPV 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                +  V   +N  +EL ++  TGTS   + KP L   ++ ++ + I  +++ P   +
Sbjct: 61  AAFAASVWVTNRLNSESELTVLRATGTSPWQMAKPALVFGLITAVMMSILTHVLLPASIA 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
           T++Q  ++    +T   L E  F      +   I + +P+ TL  +F+ D R+      Y
Sbjct: 121 TLEQRESEVARNVTAKLLSEGDFLHPARGVTFYIGRIDPDGTLNDVFLSDRRNAAESVTY 180

Query: 188 YAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSSTIVLKAN 243
                 +  D +    ++ DG   R +  ++ +S   F  ++    S    +        
Sbjct: 181 TGGKAYLVRDGERTHLVMVDGMSQRINTETQRLSSTIFSDFSYDISSLANKAEEKTRNIR 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
                 LL          P        E H R  + L  V   LI   A       R   
Sbjct: 241 AIPSLELLGDRAKLVADGPYSAGALAEELHLRFARALVCVAVVLIGFAALMLGGFSRFG- 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                 ++  +   V      +   + QN    P++Y+       + L+ +
Sbjct: 300 VWRQALLAFVLLIFVEGLRGVVSEPVLQNAELWPLIYIPTLIGLLVGLVFL 350


>gi|319404056|emb|CBI77644.1| putative permease, YjgP/YjgQ family [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 382

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 130/362 (35%), Positives = 205/362 (56%), Gaps = 6/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ FELYIL+ I   F    L  V I+W +QIL R+N ++++ ++   +L  S  LIP+V
Sbjct: 1   MRIFELYILKRIFILFSAVLLGAVGISWTVQILARVNFLTTNGQTFLTILYFSSLLIPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ PF   +  T +L +MN+++EL +I  +G S+  + KP+L LAIL S   F   N 
Sbjct: 61  TSLIMPFALVVAITTILLTMNQDSELAVISASGISKNIVWKPILLLAILASFTSFSITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  R  ++Q+ A +   L   ++ E  F  L  +LYI+I + N N T+  +FI D RD
Sbjct: 121 IAPHARLNMRQILASSHSDLISLFIREGSFQELTKNLYIEIGERNANGTIGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            Q    YYA  G+I  +   + +ILNDGE+ R    + ++SI+KF S+T        N  
Sbjct: 181 PQLGLFYYATKGAIVNNKKGKFLILNDGEIERIDYKNDNVSIIKFSSHTFSLSEFIPNKK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  +   D+ LS+L NPNP++P+Y+ + L  YR+E H+R T+ L+P++F LI+I  A   
Sbjct: 241 TPNIYPKDRPLSYLFNPNPSDPHYQRKPL-QYRAELHRRFTECLYPIVFALIAIAIA-GD 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           A   ++ +I   F +++ S  ++W   +   K E NP YIP+LY+    IS +   M+ K
Sbjct: 299 AHSYRQARISATFSTITFSLLIYWLGYFFARKTENNPSYIPLLYVIPIGISLLTFFMLLK 358

Query: 357 KY 358
            Y
Sbjct: 359 DY 360


>gi|154246777|ref|YP_001417735.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
 gi|154160862|gb|ABS68078.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
          Length = 405

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 82/385 (21%), Positives = 170/385 (44%), Gaps = 27/385 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI      +FL   + +  + W  Q L++++LV+S  +++   + I+   +PT+
Sbjct: 1   MGRLDRYIFSTAAVAFLGVVVVLAGMIWATQALRQLDLVTSQGQTIIAFVAITSLTMPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    + T   L  +N ++E++++ + G     L++P++ LA+L+S F  +    
Sbjct: 61  VLVIAPAALFIATAYTLLKLNGDSEIVVMASAGMGPWRLLRPLIILALLVSAFCALLAIK 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +T ++   K +  +     +   F  L   L   + +  PN  ++GIFI D+RD
Sbjct: 121 VVPASLATFREQVTKVRADVVSFVAQPGRFVNLSQGLVFHVRERAPNGVMRGIFINDARD 180

Query: 181 TQTHKIYYAQSGSIDLD-RQAIILNDGEVHRK---------------------SPISKDI 218
                    +   I+ D    ++L +G + R+                        S + 
Sbjct: 181 DGVSTYLADRGQIIESDAGIFLVLENGSIQRRGGAAKEAEKDASEANKDAGKDKGKSSNS 240

Query: 219 SIMKFKSYTLQTES--ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
           S+++F+ Y     S   NS    +K  ++ LS+++NP P +  Y       YR E HKRL
Sbjct: 241 SVVEFQRYAFDLSSLAPNSQGQDVKPMERPLSYVMNP-PQDDLYVRFFPGRYREELHKRL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
           +  L+P+ F  I+  A       RQ  ++  +   +     V  G   I  +++     +
Sbjct: 300 SAGLYPMAFFAIAAAALASPRTTRQS-QVAALGAIIPAMGLVQIGNFAIAGQLKTQAAAV 358

Query: 337 PILYLFLFCISSIFLLMIKKKYTKI 361
           P++YL      ++   M+ + + ++
Sbjct: 359 PLIYLLPIVTVALCA-MVVQGWIRL 382


>gi|254510429|ref|ZP_05122496.1| permease YjgP/YjgQ [Rhodobacteraceae bacterium KLH11]
 gi|221534140|gb|EEE37128.1| permease YjgP/YjgQ [Rhodobacteraceae bacterium KLH11]
          Length = 379

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 129/358 (36%), Gaps = 5/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y LR +   F    L +V + W+ + +   + V S  +S  + L+ +   +PT+
Sbjct: 1   MSRFDGYFLRQLLVLFGFFTLVLVGVFWITRSVSLFDRVISGGQSAFVFLEFTALTLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P             ++R +E+ ++  TG+S   L + VL   +   + + +    
Sbjct: 61  IRTVMPMAVFAAAVYATNRLSRESEMTVMLATGSSPWRLARAVLMFGLSAGLMMAVISVF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++Q  A+    +T   L E  F    D + + IS+ + + TL  +F+ D RD
Sbjct: 121 LRPASVERLEQRQAEVAGDVTAQLLNEGEFLHPADGVTVYISRIDLDGTLHEVFVSDRRD 180

Query: 181 TQTHKIYYAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSS 236
           T     Y + +  +        +++ DG   R       +S   F+           N+ 
Sbjct: 181 TVNPVSYSSTTAYLVNQASGIHLVMLDGVALRFDQQGNTLSSTLFEDAAYDVSELTNNTG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T            L+             L     E H+R +     +   L+        
Sbjct: 241 TDNRSREAIPTIELIRDRDTVAETDDHSLGQLVDELHQRFSWIAICIAVALVGYSTLMLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +  R       I  + +I   +     ++   + ++P    +LYL       +  L +
Sbjct: 301 SFSRFG-LWPQILGAFTILVLLEGVRGFVSPVVIEDPRLWVLLYLPAILGVVVSGLFL 357


>gi|121602513|ref|YP_988823.1| YjgP/YjgQ permease [Bartonella bacilliformis KC583]
 gi|120614690|gb|ABM45291.1| putative permease, YjgP/YjgQ family [Bartonella bacilliformis
           KC583]
          Length = 396

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 126/364 (34%), Positives = 201/364 (55%), Gaps = 8/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ I   F       V I W +QIL RIN +++S ++    L  S  LIP+V
Sbjct: 1   MRILELYILKRIFILFSAVITATVCIIWTVQILARINFLTTSGQTFLTALYFSSLLIPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +     L+ MN+++EL II  +G  + T+ KP+LFLAIL S   F   N 
Sbjct: 61  ISLVIPFALMIAIITTLSRMNQDSELTIISASGIPKTTIWKPILFLAILASCASFFITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R  ++++ A A   L   ++ E  F +L ++LYI I +  P+ T+  +FI D RD
Sbjct: 121 VAPQARLHMREMLASAHSDLINLFIHEGSFQKLTNNLYIGIGERYPDGTIGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   +YYA  G+I  ++   I  LN+GE+ R +  +  +SI+KF SYT        +  
Sbjct: 181 PKIDLLYYATKGAIVSNKSGNILVLNNGEIKRLNHQNDSVSIIKFSSYTFNLSEFIPNDR 240

Query: 239 VL--KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +      D+ LS+L  P+P++PNY+ + L  Y++EFH+RLT+WL+P++F LI++ AA   
Sbjct: 241 IPTIYPKDRPLSYLYRPDPDDPNYQRQPL-QYKAEFHRRLTEWLYPIVFALIAVAAAGDA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC--ISSIFLLMI 354
              RQ +     F ++  S  ++    + + K E N  YIP+LY+      I   F L+I
Sbjct: 300 RSYRQARISTTFF-AIIFSLLIYLVRYFFVEKTENNLAYIPLLYITPLGTSILIFFRLLI 358

Query: 355 KKKY 358
            +K 
Sbjct: 359 NRKM 362


>gi|302342716|ref|YP_003807245.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
 gi|301639329|gb|ADK84651.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
          Length = 397

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 132/364 (36%), Gaps = 15/364 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+LR +   F +S     F+  + +I++  +LV S    L+++ ++  Y +P   
Sbjct: 5   RIIHRYLLREMIGPFFISLGVFTFMLLIAKIMELTDLVVSRGVGLDVVGRLLLYTLPYFF 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +        M+ + E++ +   G S    + PV  LAI   +         
Sbjct: 65  VFTIPMATLLGVLLAFLRMSGDMEVVALKAAGVSPYAFLPPVAVLAICAWLVTSALAFWG 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      + L  +   A T   L+E +F      + I IS+      +  +FIVD R+ 
Sbjct: 125 LPWGNHRFENLVFQVAKAQTDLALKERVFMDTFPGMVIYISRLPGQGQMTDLFIVDEREK 184

Query: 182 QTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             H    A+ G I     DR  + L DG +H      +      F +Y +  +++  S  
Sbjct: 185 GRHHTIVAKRGKIFPANNDRLILRLYDGTIHSVGQNLRSAQTAAFVTYDIAVDASTLSAA 244

Query: 239 VLKA----NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
             +      +     LL      P    +       E HK+ +     ++  LI +    
Sbjct: 245 HQRTTKHEKEMYFGELLAEMDKLPADSMQHY-LIEMEMHKKFSVPFACLVMALIGLPLGM 303

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLL 352
                 +  +   + I+L +  G +   S       +   Y PI  ++     + ++ + 
Sbjct: 304 HS----RGGRSWGVAIALVVFLGYYLMLSAAWS-FGKTGDYPPIVGMWAPNLLLGALAVE 358

Query: 353 MIKK 356
           + ++
Sbjct: 359 LFRR 362


>gi|114704779|ref|ZP_01437687.1| hypothetical protein FP2506_07581 [Fulvimarina pelagi HTCC2506]
 gi|114539564|gb|EAU42684.1| hypothetical protein FP2506_07581 [Fulvimarina pelagi HTCC2506]
          Length = 398

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/360 (23%), Positives = 160/360 (44%), Gaps = 7/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R    S + S + +  I W++Q L RI++V +S  +   +L I+  L+P +
Sbjct: 1   MTLLERYIFRRALISSVGSLVSLALIVWIVQALSRIDIVKTSASAAGNILWIALMLLPDL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V PF   +    VL  +N ++E  +I  +G S   +++P+++L +   I +    + 
Sbjct: 61  AAGVVPFAILIGAIQVLNGLNADSERAVIAASGASMRVILRPIIYLGLAGGILVLTVAHG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P   S          +     +L    F R+  DL I + +    + ++ +FI D+RD
Sbjct: 121 IGPLASSAFYNGIRSINVDTITLFLRPGRFERVSPDLVISVGES-NGSIIESLFIQDTRD 179

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST- 237
                 Y+A   SI    D+  ++L DG++HRK      +S+++F++Y     +   +  
Sbjct: 180 PNLDLTYFAAEASILDQGDQSVLMLFDGQLHRKPKTGNSVSVIEFQTYAFDLSNLRPADD 239

Query: 238 -IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               + ++ +   L+ P+P++  Y+ +    Y  E   R T WL+ V F L +IV A + 
Sbjct: 240 GDWTRTSELSTLTLIAPDPDDEIYQKK-PGRYVEEATDRFTSWLYCVAFALWAIVCAGQP 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ      + + L+ +  +       +  +  NP     +YL          L+I +
Sbjct: 299 QTNRQASN-AAMTLGLAGAVALKAVAFLALSMVSPNPSMAIFVYLLPIAACVFNALLIMR 357


>gi|322418227|ref|YP_004197450.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
 gi|320124614|gb|ADW12174.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
          Length = 387

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 132/359 (36%), Gaps = 11/359 (3%)

Query: 1   MKS-FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           MK     YI   I   FL+  +   F+  + + L+   +V         +L++  YL+P+
Sbjct: 1   MKRTLYRYIFNEIPPPFLVGMVAFTFVLLMGRFLKLAEMVVEKGVPFTDVLRMVSYLLPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                 P    +        ++ ++E+  + + G S   L+ P L  ++L S+       
Sbjct: 61  FWLFTIPMALLLSILLAFGRLSGDSEVTAMKSCGISLYGLLPPPLVFSLLASLACLWVTV 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDS 178
              P   S+ K+L  +         ++E +F     D+ I     +         I  D 
Sbjct: 121 YAVPWGNSSFKKLMLEIARNSASVSIKEKVFNNAFPDMVIYADTLDTKAQNMEGVIVHDE 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAI----ILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           RD +     +A SG++  D +A      L +G +HR S    +  +++F+ Y L+   A 
Sbjct: 181 RDPKAPTTIFAASGALFSDPKAHSMEFQLKNGSIHR-SEDGANYRMVQFQEYILRVALAE 239

Query: 235 SSTI-VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            +     KA++  +  L++P         + +   R E H RL      ++F  + +   
Sbjct: 240 PTPKGPRKASEMTIDELVHPPQVAAA---KDVLARRLELHSRLALPFSCIVFTFVGVPLG 296

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
            +     +          +   +    GF  +  K    P+        LF ++  +L 
Sbjct: 297 IQNRRSGKASGFSLSIAVILCYYIALSGFDTLGEKALLPPFLSGWGPNLLFLLAGGYLF 355


>gi|158425949|ref|YP_001527241.1| putative permease precursor [Azorhizobium caulinodans ORS 571]
 gi|158332838|dbj|BAF90323.1| putative permease precursor [Azorhizobium caulinodans ORS 571]
          Length = 387

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 165/360 (45%), Gaps = 8/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI      +F+   L +  + W  Q L++++LV+S  +++   L I+   +PT+
Sbjct: 1   MGRLDRYIFSTSAVAFVGVTLVLTGMIWATQALRQLDLVTSQGQTILAFLAITSLTLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    + T+  L  +N ++E++++   G S   +++ ++ LA+L S+F       
Sbjct: 61  IMVIAPAALFIATSYTLLKLNGDSEIVVMAAAGMSPWRVLRSLMLLAVLASVFCSALSIH 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P    + +   ++ +  +     +   F  L   L   +     N  + G+FI D+R+
Sbjct: 121 IVPASLRSFRDQVSRVRADVVSFVAQPGRFVNLAPGLVFHVRDRAKNGVMSGVFINDARE 180

Query: 181 TQTHKIYYAQSGSID-LDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANS--- 235
            +       +   ++  +   ++L +G +HR+ P  + + S+++F+ Y     +      
Sbjct: 181 KEVSTYVADRGQIVEADNGIFLVLENGSIHRRVPGAASNGSVVEFQRYAFDLSALTPGGS 240

Query: 236 -STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            S   ++ N+++ +++ NP  ++P Y       +R E+HKRL+  L+P+ F  I+  A  
Sbjct: 241 QSGADIRPNERSFAYISNPPKDDP-YMIVQPGRFREEYHKRLSAGLYPLAFFAIAAAAMA 299

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +    R+ + +    I + I   +      +  ++    + +P +YL       +  L++
Sbjct: 300 RPRTTRESRGLALAAI-VPIMTALQIANFAVAGQLRTAAWAVPAIYLIPLLTIIVSALVL 358


>gi|84500989|ref|ZP_00999224.1| Predicted permease [Oceanicola batsensis HTCC2597]
 gi|84391056|gb|EAQ03474.1| Predicted permease [Oceanicola batsensis HTCC2597]
          Length = 385

 Score =  139 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 133/371 (35%), Gaps = 11/371 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L      F    L +V I W+ Q ++  + +    ++  + L+ +   +P V
Sbjct: 1   MARFDRYLLSQFMVLFGFFSLVLVSIYWINQAVRLFDALIGDGQTAWVFLEFTALTLPNV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P         V   ++  +EL+++ +TG S   L +PVL+  +++ + + +  + 
Sbjct: 61  IRIVLPMATFAAVVYVTNRLSSESELVVMQSTGFSPWRLARPVLWFGVIVGLIMSVMSHF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S +++     +  LT   L E  F      +   I + + + TL+ +F  D RD
Sbjct: 121 LVPVSISRLQERQDDLRQDLTARLLTEGSFLHPVAGITFYIRQIDADGTLRDVFFSDRRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAI------ILNDGEVHRKSPISKDISIMKFKSYTLQTESA- 233
            ++ + + A    +             ++ DG         + +    F+ +T       
Sbjct: 181 ARSPQTFTAARAYLIEGGGDDEGGAKLVMLDGLAQTLRAEDQRLFTTYFEDFTYDIGRLF 240

Query: 234 -NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            +     +         L                    E H R  Q L  +   LI    
Sbjct: 241 GDRGLPHVHIRHLPTLRLFAHPEQVATLTGSSPGQIAEEAHGRFAQALLCLAAALIGFST 300

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF-- 350
                  R       I +++ +   V          + ++P   P++Y+       I   
Sbjct: 301 LLTGGFSRFG-VWQQIVVAIVLVMIVKSIEGVASDPVRRDPSLWPLIYVAPLSGIGIGCV 359

Query: 351 LLMIKKKYTKI 361
           +L I  + +++
Sbjct: 360 MLWIASRGSRL 370


>gi|326408706|gb|ADZ65771.1| permease YjgP/YjgQ family protein [Brucella melitensis M28]
 gi|326538430|gb|ADZ86645.1| permease YjgP/YjgQ family protein [Brucella melitensis M5-90]
          Length = 388

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 106/349 (30%), Positives = 196/349 (56%), Gaps = 8/349 (2%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ +P+V PF   +  T 
Sbjct: 2   FFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSAIPLVMPFALIIAITQ 61

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
            L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N +EP  R  ++ + A 
Sbjct: 62  TLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANYVEPYARINMRAMIAN 121

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI- 194
           A   L    ++E  F +L D+LYI+I++   + ++ G+FI DS D     IYYA  G+I 
Sbjct: 122 ASADLMHVIIQEGTFRKLADNLYIQIAERRADGSIGGLFIADSCDPTLDLIYYAADGAIA 181

Query: 195 -DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STIVLKANDQNLSFLL 251
                  +++ +GEV R++     +SI+KF SY        S     V+ A D+ L++LL
Sbjct: 182 STPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGDDFVIFAKDRPLTYLL 241

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
           NP+ N+P  +   L  Y++E H+R TQW++P+IF +I++  A       +  ++   F +
Sbjct: 242 NPDSNDPMLQTRPLT-YKAELHRRFTQWIYPLIFAMIALAIAGDSR-SHREARVSASFSA 299

Query: 312 LSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLLMIKKKY 358
           +S +  V+W   +   + +++P YI ++YL    +  +  F+L+  ++ 
Sbjct: 300 ISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILLTGRRL 348


>gi|78222463|ref|YP_384210.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
 gi|78193718|gb|ABB31485.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
          Length = 418

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 126/358 (35%), Gaps = 6/358 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                YI +     F++      F+  + ++L+   +V +       + ++  Y++P+ L
Sbjct: 32  SILFRYIFKETAVPFVLGMAVFTFVLLMGRLLKLAEMVFAKGVPFLDVCRLILYMLPSFL 91

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +        ++ ++E+  +   G    +L+ PV   A+L  +         
Sbjct: 92  LVAIPMAFLLAVLLSFGRLSADSEVTAMKAGGVGLGSLLTPVFTFAVLAYLVTTFITVFA 151

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRD 180
            P   ++ K+   +   +   + ++E +F      L + I  Y+   + + GI I D R+
Sbjct: 152 LPWGNTSFKRFLYEVIESRAATTIKEKVFIDDFPGLVVYIDDYDQTSHQISGILIHDERN 211

Query: 181 TQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  +A +G I    +     + L +G +HR         +++F+SY L  +   ++
Sbjct: 212 PDEPMTIFASTGIIAAAPEEKNVRLHLVNGSIHRGIDPGG-YRLVEFRSYDLHVDLRQNA 270

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                         L  +  N     +       E HKR       ++F ++ +    + 
Sbjct: 271 KKNQFDEQDMTLKQLIASRGNRQNNEKFRRDVSIELHKRFALPFACIVFAMVGVPLGIQN 330

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +        I L + + V      I  K          L    F    ++LL +
Sbjct: 331 QRSGRAGGFSAGIIILMLYYVVMSAGKTIAEKEILPIPLAVWLPNVFFTAFGVYLLRL 388


>gi|146277168|ref|YP_001167327.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555409|gb|ABP70022.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 376

 Score =  138 bits (348), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 138/367 (37%), Gaps = 7/367 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L  +   F    L +V + W+ + +   + + S  +S  + L+ S   +P V
Sbjct: 1   MSRFDRYLLSQLVALFGFFSLVLVLVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P      T  ++  +++ +EL+++  TG S   L +PV+   +++++ + +  N+
Sbjct: 61  IRLVLPLSAFAATIYIVNRLSQESELVVMQATGFSAFRLARPVILFGLIVAMMMIVLMNL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R+T+   SA+     T  +L +  F      + + I + +    L  + +VD RD
Sbjct: 121 LVPASRATLSARSAEISENATARFLRDGEFLHPVRGVTLYIREISETGELNDLLLVDDRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                IY A+   +         ++ DG     +   + + + +F   T        +  
Sbjct: 181 RARSTIYTARRALLVRTETTPRLLMIDGSAQTLTREGRRLELTRFADVTYDLGAFMKSDG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  + +   LL P                 E H R+ Q    +   LI   A    
Sbjct: 241 PKRRVLEELSTPDLLAPTEALLAETRSTRAAALYEGHSRIAQPFLGLASSLIGFAALLLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMI 354
           +  R       I  ++ +   V             +    P+ Y       +  I LL I
Sbjct: 301 SFSRFG-LWWQILFAVVLLIVVQTINVAASGVGVTDEALWPLAYAAPVVGLLIGILLLWI 359

Query: 355 KKKYTKI 361
            ++  ++
Sbjct: 360 AQRPRRL 366


>gi|299135068|ref|ZP_07028259.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
 gi|298590045|gb|EFI50249.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
          Length = 381

 Score =  138 bits (348), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 75/353 (21%), Positives = 161/353 (45%), Gaps = 7/353 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           ++R    SFL+  + +  + WV Q L+ I+L+++  +++ + L I+G  IP +  ++ P 
Sbjct: 1   MVRLTLLSFLIVLVSLTGVIWVTQALRGIDLMTAQGQTVLVFLGITGLAIPVLALIIAPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +  T+ L  ++ ++E+++++  G S    ++P +   ++++  +      + P+C  
Sbjct: 61  AMLLAVTHTLNRLSADSEVIVMNAAGLSPWRFLRPFMVSTVIVACLISFLAIFLAPECLR 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            +++   +    +  + L+   F RLD  L +++ +  P   L G+FI D R+       
Sbjct: 121 ALRRWHTEIGADVLANVLQPGQFIRLD-KLVLRVQERRPGGVLVGVFIDDQRNPAERINI 179

Query: 188 YAQSGSIDLDRQ--AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN--SSTIVLKAN 243
            AQ+G +    +   ++L+DG + R     KD  I+ FKSY       +    T    A 
Sbjct: 180 TAQNGVVQKTDKGSFLVLSDGNLQRFQADKKDPLIVAFKSYAFDMSQFSQAPQTYNYNAR 239

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
           ++ +  L++P  ++   +   L  +R+E H RL   L+P +F +++          RQ +
Sbjct: 240 ERFIGELISPPKDDAVAQ-RSLGQFRAELHDRLLAGLYPFVFVILAFAFLGPPRTTRQGR 298

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               +   + +   V  G           P  I + Y  L  ++ + + MI K
Sbjct: 299 NFA-VSALVLLVLVVRIGGYACSTIGVSRPGAIVVQYAMLMIVAGVSIWMILK 350


>gi|319898731|ref|YP_004158824.1| permease, YjgP/YjgQ family [Bartonella clarridgeiae 73]
 gi|319402695|emb|CBI76241.1| putative permease, YjgP/YjgQ family [Bartonella clarridgeiae 73]
          Length = 385

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 129/358 (36%), Positives = 199/358 (55%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ I   F    +  + I+W +QIL RIN +++S ++   +L  S  LIP+V
Sbjct: 1   MRILELYILKRIFLLFSAVMIGAIGISWTVQILARINFLTTSGQTFLTVLHFSSLLIPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +V PF   +  T +L++MN+++EL +I  +G  +  + KP+L LAIL S+  F   N 
Sbjct: 61  TSLVMPFGLVIAITIILSTMNQDSELAVISASGIPKNIIWKPILLLAILTSLTSFSITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  R  ++Q+ A     L   ++ E  F  L  +LYI+I + N N T+  +FI D RD
Sbjct: 121 IAPNARLNMRQMLANTHSDLINLFIREGSFQELTKNLYIEIGETNTNGTIGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            Q    YYA+ G I  +     +ILNDGE+ R    + ++SI+KF S+T        N  
Sbjct: 181 RQFGLFYYAKKGIIVNNKKGNFLILNDGEIERIDYKNDNVSIIKFSSHTFSLSEFITNKR 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  +   D+ LS+L NP+PN+P+Y+ + L  YR+EFH+RLT+ L+P++F LI++  A   
Sbjct: 241 TPNIYPKDRPLSYLSNPDPNDPHYQRKPL-QYRAEFHRRLTECLYPIVFALIAVAIAGDA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ       F  +S S  ++W   +   K E NP YIP+LY+    IS +   M+
Sbjct: 300 RSYRQTHISST-FSVISFSLLIYWLGYFFAKKTENNPVYIPLLYIIPIGISILTFFML 356


>gi|319405494|emb|CBI79113.1| conserved membrane hypothetical protein [Bartonella sp. AR 15-3]
          Length = 382

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 132/358 (36%), Positives = 199/358 (55%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ I   F    L  + I+W +QIL RIN +++S ++   +L  S  LIP+V
Sbjct: 1   MRILELYILKRIFILFSAVMLGAIGISWTVQILARINFLTTSGQTFLTILYFSSLLIPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +V PF   +  T +L++MN++TEL +I  +G S+  + KP+L LAIL S   F   N 
Sbjct: 61  TSLVIPFALVIAITIILSTMNQDTELAVISASGISKNIVWKPILLLAILASFTSFSITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  R  ++Q+ A A   L   ++ E  F  L  +LYI+I + N N T+  +FI D RD
Sbjct: 121 IAPHARLNMRQMLANAHSDLISLFIREGSFQELAKNLYIEIGERNANGTIGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            Q    YYA  G+I  +     +ILNDGE+ R    + ++SI+KF SYT        N  
Sbjct: 181 HQLGLFYYAAKGAIVNNKKGNFLILNDGEIERIDYKNDNVSIIKFSSYTFSLSEFIPNKK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  +   D+ LS+L NP+PN+P+Y+ +    YR+EFH+R T+ L+P++F LI+IV     
Sbjct: 241 TPNIYPKDRPLSYLSNPSPNDPHYQRKPF-QYRAEFHRRFTECLYPIVFALIAIVIVGNA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ       F +++ S  ++W   +   K E NP YIP+LY+    I S+   M+
Sbjct: 300 RSYRQAHIFET-FSTITFSLLIYWLGYFFAQKAENNPSYIPLLYIIPIGICSLTFFML 356


>gi|89054305|ref|YP_509756.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
 gi|88863854|gb|ABD54731.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
          Length = 371

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 132/341 (38%), Gaps = 4/341 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  ++ YILR +   F    L +V + WV Q  +  + + +  +++ + L+ S   +P +
Sbjct: 1   MGQYDRYILRQLVALFGFFSLVLVSVYWVNQAARLFDRLIADGQNIGVFLEFSALTLPWI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    + T  +   M   +EL+++   G S + L++PV     LL+I L +  NI
Sbjct: 61  VQLILPVSAFVATLYIFNRMISESELVVLQTAGLSALRLLRPVFVFGCLLAILLAVLVNI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R    Q  A+ Q  LT  +L    F      L + I + +     + +F+ D+  
Sbjct: 121 LAPTARGQFTQRQAEVQDDLTGRFLRAGEFIHPAAGLTVYIREISELGEFRDLFLQDAST 180

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESA-NSST 237
                 Y A +  +         ++ DG        +  +S + F  +T    +   +  
Sbjct: 181 PGVEVTYTANTALLVRSDTGPRLVMFDGVAQTLDLDTGRLSTISFSDFTYSVGTLGGTGA 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +   +     LL  N          L     E H RL Q LF +   LI+  +    +
Sbjct: 241 RQIDVRELPTPLLLRANQQIAGALNLPLSHLVFEGHDRLAQSLFVLFVPLIAAASLMLGS 300

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
             R       I I++++   +    +     +  +    P+
Sbjct: 301 FSRFG-VWKQILIAVALVLPMQIVRNASEAAVRADIEAWPM 340


>gi|221133510|ref|ZP_03559815.1| permease YjgP/YjgQ [Glaciecola sp. HTCC2999]
          Length = 389

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/364 (12%), Positives = 133/364 (36%), Gaps = 22/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+L+   +S       ++ I   ++ ++ +   +      ++++       P +  
Sbjct: 2   IIFRYLLKETFKSQFAIFFILMAIFITLRFVRVLGDATDGEIPASLVMGFLALYSPVLAS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +           ++E+ ++   G S   + + +L LA++L +        + 
Sbjct: 62  LILPISFFLGIMMAHGRFYVDSEMTVLQACGVSEWYVTRVMLLLAVILGLLTASITMYVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQGIFIVDS 178
           P    +  QL  KA      + +    F +  +D       ++   N   T   +  +++
Sbjct: 122 PLAVESEYQLREKAGSEAGIAAIIPGRFQQTGNDAAVIFVHEVESANNQLTKIFLSQINA 181

Query: 179 RDTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              +  ++ Y+Q+G+I+      Q +IL +G+ +  S   ++   + F  Y +Q      
Sbjct: 182 DQPKKVRVIYSQTGTIEVQSDGTQQLILRNGQQYDGSIGQQNYQRVNFDEYRIQIGEQKV 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            ++  K        L+           +  +   +E   R+   L      LI++     
Sbjct: 242 ESMRRKVAALPTLELI----------GDNSDEAIAELQWRIAIPLALPFLVLIAVPL--- 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLM 353
             +  ++ +   +F ++ +  G F         +   + P  + + ++    +    +L+
Sbjct: 289 SKVNPRQGRFGKLFPAILMYLGYFLLLMAARRALEDGKIPAGLGLWWVHGIILFIGTVLL 348

Query: 354 IKKK 357
            +++
Sbjct: 349 SRQR 352


>gi|254465542|ref|ZP_05078953.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
 gi|206686450|gb|EDZ46932.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
          Length = 364

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 128/359 (35%), Gaps = 7/359 (1%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +      F    L +V + WV + +   + +  + +S  + L+ +   +P ++ MV P  
Sbjct: 1   MSQYLLFFGFFALILVAVFWVNRAVVLFDTLIGNGQSALVFLEFTALTLPNLIRMVLPIA 60

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
                  V   +N  +EL ++  TGTS   + +P L   I+ ++ +    + + P   + 
Sbjct: 61  AFGAAVWVTNRLNSESELTVLRATGTSPWQMARPALAFGIITALMMSALTHYLLPASINQ 120

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYY 188
           +++  ++    +T   L E  F    + +   I + +P+ TL  +F+ D RD      Y 
Sbjct: 121 LEERESEVSRNITAKLLSEGDFLHPAEGVTFYIRQIDPDGTLNDVFLSDRRDPAVTVTYT 180

Query: 189 AQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSSTIVLKAND 244
                +  D     +I+ +G   R    ++ +S   F  ++    +    +         
Sbjct: 181 GTRAFLVRDEGSAHLIMVEGMAQRLDNETQRMSTTFFSDFSYDISALARKAENPARNIRA 240

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
                L+                   E H R  + L  V   LI   A       R    
Sbjct: 241 IPSLELMTSTEAVTRTDGYSAGAQAEELHLRFARALVCVAVALIGFSALMLGTFSRFG-V 299

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS--IFLLMIKKKYTKI 361
               F++  +   V      +   +  NP   P++YL      +  +  L++  +  +I
Sbjct: 300 WRQAFLAFVVLIFVEGLRGVVSEPVLDNPGLWPLIYLPTLLGLAVSLIFLILASRPKRI 358


>gi|78186277|ref|YP_374320.1| hypothetical protein Plut_0389 [Chlorobium luteolum DSM 273]
 gi|78166179|gb|ABB23277.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
          Length = 360

 Score =  137 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 124/362 (34%), Gaps = 7/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI R   ++F+ + L  V +  +I +++ ++      +    + +   + IP  
Sbjct: 1   MKILDRYIFRQFVKTFIFTSLAFVALFMLIHMVENLDDFMDKNQGFEAIAQYYLFAIPQT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + + +P    +    V   +  ++EL  I + G S   L+ P L   +++S     +   
Sbjct: 61  ILITSPVSSLLAAILVAGKLAVSSELPAIRSAGVSMGQLLYPFLLGGMIISTINLTNSFW 120

Query: 121 IEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
           I P      +  +      Q                 + +    S     ++ + + I  
Sbjct: 121 IAPAATLRNNNFELTELGHQRRDEEGGNSNLHILEPGNRIITLGSLNPDMSSAREVSIEQ 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                      A     + +++A +L +         S+           L     + + 
Sbjct: 181 FSQKGIVSRSDADGMRYNPEKKAWVLENAAERMFEDGSERFWTEPMLPVQLHLSLQSLAE 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + L+ ++ N++          +     LE    + H +L+     +I  +I +      A
Sbjct: 241 LNLRPDEMNIARHWQYLSEKKHAGFAGLERSSVKLHTKLSLPFASLIIIIIGVPL---SA 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             ++      I ISL   F +F G    I     N    P+L  +L  +  + +  +  +
Sbjct: 298 KKKRGGLAAEIGISLFAGF-LFLGLQKTIATFGYNGVMPPMLAAWLPNLLFLGVGYVIYR 356

Query: 358 YT 359
           Y+
Sbjct: 357 YS 358


>gi|159043739|ref|YP_001532533.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
 gi|157911499|gb|ABV92932.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
          Length = 380

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 125/343 (36%), Gaps = 4/343 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++ YIL  +  +F    L IV I W+ + ++    +S   + L +  ++S   +P ++ 
Sbjct: 4   RYDRYILGRLMVTFGFFTLIIVLIYWINRSIRLFERLSGDGQGLALFAQLSLLSLPYLIY 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P        +    M  ++E + +   G S   +++P L++ ++ +  + +  +++ 
Sbjct: 64  LMLPLAAFASAVSTGNRMGSDSETVALQAAGISAFRIVRPALYMGVMAAALMLLLAHLLV 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  R  I  L  +    ++   LE   F    D + + +++      L  + + D RD  
Sbjct: 124 PMSRVAIADLEEQLADEVSARLLEPGKFQSPIDGVTVFVAEITGEGVLSKVLLSDQRDPA 183

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVH-RKSPISKDISIMKFKSYTLQTE--SANSSTIV 239
              IY A    +        L       +       +S ++F+ + L           ++
Sbjct: 184 EEVIYTANQALLVRSDTGPQLVMISGLAQFLRADGTLSTLQFEDFALGLGEVEVPEDRVL 243

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                 + + LL  +P +     +    + SE H+RL      +   L+   A       
Sbjct: 244 RDLRGWDTARLLRADPADLESVGKSRGAFLSEAHRRLANPALAISTALLGFSALLVGGFS 303

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           R       +  ++     +    +      + +    P+LY  
Sbjct: 304 RFG-FWQQVAGAILALIVIQLSVNMSEEIAQSDAAAWPVLYAP 345


>gi|254453241|ref|ZP_05066678.1| permease YjgP/YjgQ family protein [Octadecabacter antarcticus 238]
 gi|198267647|gb|EDY91917.1| permease YjgP/YjgQ family protein [Octadecabacter antarcticus 238]
          Length = 372

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 132/352 (37%), Gaps = 5/352 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L  +   F    L +V I W+ + ++  + + +  +S  + L+++   +P+++ +V P 
Sbjct: 1   MLGQLLVFFGFFSLILVLIYWINRAVRLFDRLIADGQSAWVFLELTSLSLPSLIRIVLPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +    V   M+ ++EL ++  TG S   L +PV+   +++++ + I  NI+ P    
Sbjct: 61  SAFVAAVYVTNRMSSDSELTVVQATGYSPFRLARPVIVFGVIVAVLMSILTNILVPLSTE 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            +    A+    +T   L    F    DD+   I +  P   +  IFI +S        Y
Sbjct: 121 RLITRQAEIAQTMTARLLTPGEFLTPTDDVTFYIRELPPGGEMLDIFISESTSPTQRTTY 180

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA--N 243
            A    +    +   +++ DG     +  +  +   +F+ +     +  +   V K   N
Sbjct: 181 TASRAYLVRTENGPQLVMVDGLTQTLNLETSRLLTTRFEDFVYNVSALMNDDPVRKTSVN 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             +   LL P+        +  +  +   H R+ Q     + GL+   A       R   
Sbjct: 241 GLSTMALLRPSAETIADTNQTGDQLKLRGHDRIAQAALGFVAGLVGFSALVVGGFSRFG- 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               I  ++ +   +             N    P +YL       I  +++ 
Sbjct: 300 LWRNIIFAVGLVILLKLLEGTGTSIATTNAALWPFVYLAGIGGVVISAMLLH 351


>gi|312897532|ref|ZP_07756952.1| conserved hypothetical protein [Megasphaera micronuciformis F0359]
 gi|310621384|gb|EFQ04924.1| conserved hypothetical protein [Megasphaera micronuciformis F0359]
          Length = 364

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 117/367 (31%), Gaps = 15/367 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        +      L +  NL++    S+    +I    +P+
Sbjct: 1   MRILDKYILKEFIGPFLFGVCAFTSVFVGTGTLYRIANLINQYGASMWAAFRILVLALPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + +      M+  +E++++ + G +   L  P+   A+ +S+       
Sbjct: 61  IIVITFPMSVLLGSLMAFGRMSAASEIIVMRSGGQNFPRLAMPIFITALCISLGTTAFNE 120

Query: 120 IIEPKCRSTIKQLSAKAQL---ALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + PK  +   ++  +        T          +  D   +  ++       +   + 
Sbjct: 121 FVVPKANNAYNRIINEEVKAGAQPTTQDHIILKNVKGSDISSLMYARQYDGQEKRLKDLT 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK----DISIMKFKSYTLQTES 232
                        ++   + D    I++ G ++  S   +           ++  +  + 
Sbjct: 181 VQEFDNDVLTRVEKADYAEWDGDKWIMHKGIIYDLSGGDEQQVTRTMTFNHQTLPISQKP 240

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              +    K ++  +  L        +         + E   R +  L  ++  L+    
Sbjct: 241 NKMAESQKKPDELTIREL-KEQIKVLDNNSVDTNKMKVELFNRFSMPLASLVCALVGAPL 299

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIF 350
                  ++        IS+ + F +++    I + +       P +  FL         
Sbjct: 300 GL---QKQRGSSSIGFGISVIVIF-IYYSIMTISNALGNGGRIPPYVAAFLPDVITGIAG 355

Query: 351 LLMIKKK 357
           + +I KK
Sbjct: 356 IWLIYKK 362


>gi|86609823|ref|YP_478585.1| YjgP/YjgQ family protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558365|gb|ABD03322.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 400

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 58/375 (15%), Positives = 129/375 (34%), Gaps = 25/375 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + Y+L  +   FL        +   V  + + + LV  +  SL+  L++     P ++
Sbjct: 27  LMDRYVLSEMLLPFLFGVGAFTTLVMAVGSLFELVRLVVEAGLSLSAALQVFVLRAPGII 86

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      ++ + E+  +   G S   L+ P L L++L++   F+   ++
Sbjct: 87  VLTFPMSMLLATLLAYGRLSADNEITALRGCGVSLYRLMVPALVLSLLVTTLTFLFNELV 146

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY---------------IKISKYNP 166
            P           +A         E  L+    + L                   ++   
Sbjct: 147 VPVSNRQAATTLNRALNRDPDFRRENILYQEFGEILMPEPDGTFSRRQGLTRQFYARSFD 206

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
              ++GI ++D  +   ++I  AQ G  D      +  DG  +  SP     +I  F   
Sbjct: 207 GKQMRGIIVLDFSNEALNQILLAQRGRWDPQENLWVFEDGTNYIVSPDGTYSNIATFSRQ 266

Query: 227 TLQTE--SANSSTIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLFPV 283
            L+        +  +    + N+  L +      +    + +   +   +++       +
Sbjct: 267 ELRLPRAPLELAQEIRSPEEMNIRELKHYIEVIASSGDLQRVRRLQVSLNQKYAIPFACL 326

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
            F LI +    +     +      + IS+ I F  F+   +I   + Q     P    +L
Sbjct: 327 AFTLIGVPLGLRPQ---RTGSSLGLGISVLIIFA-FYVLLFITQALGQIGTLGPATAAWL 382

Query: 344 --FCISSIFLLMIKK 356
             F  + + L ++ +
Sbjct: 383 PNFICAVVGLGLLHR 397


>gi|114799726|ref|YP_760969.1| putative permease [Hyphomonas neptunium ATCC 15444]
 gi|114739900|gb|ABI78025.1| putative permease [Hyphomonas neptunium ATCC 15444]
          Length = 380

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 144/363 (39%), Gaps = 4/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   +L++LR + ++ L+    +V +A + Q L R +++  + +S      I     P V
Sbjct: 1   MTKIQLHLLRQVLQAVLIIVGSLVMVALLAQGLSRTDVILENRQSAITYFYIVMLGSPQV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L  +++++E+++    G +R  +  PVL LA++  +        
Sbjct: 61  IALLLPLALFVAGVWSLNRIHKDSEIVVAQAAGMTRWQVASPVLRLAMVCLVVHLGVNLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P  +  +++  A+A+  L  +      F    + L               +    +  
Sbjct: 121 VQPMSQRAMREAVAEARADLAAALFRAGQFTSNGERLTFYARDQVGGELRGVLISDMTDP 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
                I    +  + +D Q  +L    + ++   ++ +S+++F  Y           S +
Sbjct: 181 EFPMDILARSAALVSVDGQPTLLLRDALSQQLDENQQLSVLEFDQYMFDLSDFMKEDSEL 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           VLKA+D+ L  L+  +  N     +  +++ +E + RLT  +  ++  L++I A      
Sbjct: 241 VLKASDKFLHELIFLDRKNYFEN-KEADSFLAEANARLTSPMLNIVMALLAIFAVLGGDF 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            RQ      I ++   +  V      +      +P     L++       I   +   + 
Sbjct: 300 SRQGY-AKRIGLATGGAIFVLVLHLALQSAAADDPALNIALWVVPILAGIILGWIYFGRG 358

Query: 359 TKI 361
            +I
Sbjct: 359 ARI 361


>gi|158521442|ref|YP_001529312.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
 gi|158510268|gb|ABW67235.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
          Length = 391

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 133/358 (37%), Gaps = 10/358 (2%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI+  +   F +S      +    Q+L   N + +    L +++ +  Y  P  L  
Sbjct: 6   IDRYIMAELVPVFGVSLAVFTLVFLTHQLLDITNFIVNYGTGLGVVMLMLVYSTPYFLVY 65

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           V P    M        M+ + E++ + ++G S   L  PV+   +   +   +      P
Sbjct: 66  VIPISTMMAVLLTFLRMSGDNEIVALKSSGVSLYRLFYPVMGFCVAACLLTLLMTLWGLP 125

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL-QGIFIVDSRDTQ 182
           + +   KQL+     +     + +  F  L + + + + +++    +   +FI D R   
Sbjct: 126 RGKVAFKQLAYTVVTSNPNLGIVDREFNTLFNGITLYVGQFDKKQRVLSDVFIEDQRSAG 185

Query: 183 THKIYYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSYTLQTESAN---- 234
                 A SG++D+D    +    L DG +++     +   +++F++Y +  +       
Sbjct: 186 KPVTICAPSGTLDVDMVGQVVRLSLADGRMYQVDLRDRSSRVIRFETYDIHLDLERAGQV 245

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +ST      + +L+ L +              + R E HK+ +     V+ GL+++    
Sbjct: 246 ASTAARSEKEMSLAELFDHIQKAGAA-GLPRGSARMELHKKFSIPFACVVLGLLAVPLGV 304

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           +    +    I    +   + + V  G   +      +P     L   +     +FL 
Sbjct: 305 QARGRKTSSGIGLALVFFLLYYLVLSGGEILGESGFLHPALAMWLPDMVMGGLGLFLY 362


>gi|83594275|ref|YP_428027.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
 gi|83577189|gb|ABC23740.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
          Length = 396

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 59/370 (15%), Positives = 147/370 (39%), Gaps = 15/370 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   YILR +     +  + ++ + W+I  L+ ++   +   S+   L+++  L+P  L 
Sbjct: 5   TLHRYILRNLLVGLAVGSVALIVLIWLINSLKFLDWFVNKGLSVATFLRLTLLLMPGFLT 64

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P             +  + EL+++   G     L +P L L  +L+   +     + 
Sbjct: 65  VFIPIALFAVVLFTYNRLAADRELIVMRAAGMGPWQLARPALALCAVLTGVGYWLTLSVV 124

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      + +  + +  ++   ++E  F ++ D L +   +   +  L  + I D+    
Sbjct: 125 PAMEGAFEAIKYEVRGEVSSLVIKEGQFNQMKDGLIVYAGERAKDGRLIDLMIHDTTGKT 184

Query: 183 THKIYYAQSGSIDLDRQ--AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST--I 238
           +     A+SG++  + +   I+L +G    ++  +  ++ + F SY +      +ST   
Sbjct: 185 SDLTVMAESGALVREGEGARILLINGNRQERNRQTGKVNFLYFDSYAVDLGGKAASTEMR 244

Query: 239 VLKANDQNLSFLLNPNPNNPN-------YRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
             +  ++ LS L++    +         Y    +   R E H RL + L  + F LI + 
Sbjct: 245 FREERERPLSELISLKAGDRIDPDYPFTYEERHIRRMRMEAHLRLLRPLAHIGFLLIGLA 304

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISS 348
           A       R+      + +++++      G        +++      + ++ L    +  
Sbjct: 305 AVLTGEFDRRGGN-KRVILAVALVVLFQAGSLGAATVAKKSLDGLLLLDLMTLLPILVGW 363

Query: 349 IFLLMIKKKY 358
           I+L+   +++
Sbjct: 364 IWLVWPSERW 373


>gi|92115033|ref|YP_574961.1| permease YjgP/YjgQ [Chromohalobacter salexigens DSM 3043]
 gi|91798123|gb|ABE60262.1| permease YjgP/YjgQ [Chromohalobacter salexigens DSM 3043]
          Length = 386

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/368 (12%), Positives = 121/368 (32%), Gaps = 23/368 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R I  +       ++ +    + ++     +      +IL  +  Y +P  + 
Sbjct: 28  IVFRYLTREILATMAAVAGVLLLVIMGSRFIRYFGDAAQGDIPASILGTLMLYHLPGFME 87

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P  F +        +  N+E+ ++   G S   L++  L+ A+L+++ + +    + 
Sbjct: 88  LVLPLSFFLGILLAFGQLYLNSEITVLVACGISPNRLLRVTLWPALLVALLVALCSLWLT 147

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      + +  + +  L FS L+   F              N + +      +  R  +
Sbjct: 148 PNGARHNEMVLEEQKSRLDFSVLQPGRFQEFGSGRTAYTESLNDDRSRMESVFISERQPR 207

Query: 183 T----HKIYYAQSGSID-----LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           +      +     G           + ++L DGE +   P +     ++F +Y ++   A
Sbjct: 208 SDGTPETVVTRADGGYQTVDDDTGSRFLVLTDGERYSVEPGNHVAERVQFDTYAVRLSQA 267

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +    +  A   +   LL                  +    RL+  L   I  L+++   
Sbjct: 268 SERVDLQAAELTSTPQLLE----------RGGSEAWANLQWRLSMPLMVPILTLLALPL- 316

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLL 352
               +  ++ +   +  ++ +              I +      I ++        + + 
Sbjct: 317 --SRVNPRQGRFAKLLPAIFLHISYLSLLLAAQDAIARGSLAPTIGMWPIHLGYLLLGVW 374

Query: 353 MIKKKYTK 360
           M ++   +
Sbjct: 375 MTRRDQRR 382


>gi|77919518|ref|YP_357333.1| hypothetical protein Pcar_1922 [Pelobacter carbinolicus DSM 2380]
 gi|77545601|gb|ABA89163.1| conserved hypothetical membrane protein [Pelobacter carbinolicus
           DSM 2380]
          Length = 418

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 133/363 (36%), Gaps = 13/363 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+LR      L+       +  + +IL  + LV +    L  +L +  YL+PT L 
Sbjct: 32  RIQRYLLRETLVPMLLGLAVFTLVLLLGRILNLVELVINKGVPLVDVLLLLAYLLPTFLV 91

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P  F +        M+ + E+L +   G     L  P++ L +L+S+    +   I+
Sbjct: 92  LTLPLSFLLGVMAGFGRMSADREILALKACGVGLRQLTAPIVGLGLLVSLATAATTIAIK 151

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSRDT 181
           P      ++       +     ++  +F    + + +  +  +  +  +QG+FI D RD 
Sbjct: 152 PASEDLFREKLFHIASSRANIGIQAQIFNDEFEGIILYANDVDERSGRMQGVFISDERDD 211

Query: 182 QTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKD-ISIMKFKSYTLQTESANSS 236
               I  A  G I  +++     + L +G +HR+   +     +++F  Y L  +   +S
Sbjct: 212 TLSSIILANEGRIFSNQENLTLTLHLENGTIHRQRRETGSGFQVIEFTRYDLNLDLGQTS 271

Query: 237 TIVLKAN----DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
               +         L  L      +    P       +EFH RL   + P++F L+ +  
Sbjct: 272 MSADQPRKNKKTMTLGELYQAIRPDAATPPSKKRELLAEFHWRLAVPVIPLLFALLGVPL 331

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
             +     +          L +    +   S     +        I++          ++
Sbjct: 332 GIQPVRSGRGS---GFAAGLLVFLAYYVLLSLAGTLVVDAGLPGLIMWGPNSIFLLASIV 388

Query: 353 MIK 355
           +++
Sbjct: 389 VLR 391


>gi|39997020|ref|NP_952971.1| hypothetical protein GSU1922 [Geobacter sulfurreducens PCA]
 gi|39983908|gb|AAR35298.1| membrane protein, putative [Geobacter sulfurreducens PCA]
          Length = 399

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 124/347 (35%), Gaps = 10/347 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    YI       F +      F+  + ++L+   +V +       + ++  Y++P+  
Sbjct: 14  RLLFRYICTETAVPFALGLTVFTFVLLMGRLLKLAEMVFARGVPFLDVTRLILYMLPSFF 73

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +     +  ++ ++E+  +  +G S  T+  PV+   ++            
Sbjct: 74  LVAIPMAFLLAVLLAMGRLSADSEVTAMKASGMSIGTIAVPVIAFGVITYAATTFVSVYA 133

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSRD 180
            P   +  K+             + E +F      L I +  ++P +  + GI I D R+
Sbjct: 134 LPWGNTAFKKFLHGVIETRAAMSITEKVFNDEFPGLVIYVDGFDPKSGRISGILIHDERN 193

Query: 181 TQTHKIYYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  +A SG +  + +  I    LN+G +HR    +    +++F SY L        
Sbjct: 194 PDEPSTIFAASGQLATNPEERIVRLRLNNGGIHRG-IGTGGYRLVEFTSYDLSIALQREQ 252

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  +      L     +P  +P+L+     E HKR       V+F +I++    + 
Sbjct: 253 QKARLNEEDMTLGELLARMKSPGEQPKLVREMHFELHKRFALPFACVVFAVIAVPLGIQN 312

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
               +       F +  I   +++        + +       + +++
Sbjct: 313 QRSGRAGG----FAAGIILLMLYYILMSAGKTVNEKGIAPAFVAVWI 355


>gi|315500012|ref|YP_004088815.1| permease yjgp/yjgq family protein [Asticcacaulis excentricus CB 48]
 gi|315418024|gb|ADU14664.1| permease YjgP/YjgQ family protein [Asticcacaulis excentricus CB 48]
          Length = 384

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/362 (20%), Positives = 143/362 (39%), Gaps = 8/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++ E YI R +    L +   +  IA + Q L + +++    +SL+  LKI+   +P +
Sbjct: 1   MRTIEGYISRQMRTPILGAIAALTAIAILSQSLTQFDVIVERGQSLSTFLKITFLALPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    + T   L  M+ + E++     G S   +  PV+   + +++   +    
Sbjct: 61  SGLIFPVAIFVGTLVALNRMHNDHEIVAGYANGMSLWRIASPVVRFGVYITLMGLLMTLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I+P     +++   K +  +  + + E  F      + I + + + +  L+ IFI     
Sbjct: 121 IQPAASRAMREELFKIKTDVIAAAVREGDFSTTPSGMTIYVQRIDQSGLLRQIFIRTPGP 180

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               + Y A+ G +       Q +IL DG   + SP    ++ + F  Y+        S 
Sbjct: 181 HGLDRTYLAREGRVITPVKGGQVLILRDGSTQQLSPEG-VLNHLTFAEYSFDISQYVISE 239

Query: 238 --IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             +  K +D+    L  PN               +E H R++  L+ + F L++IV    
Sbjct: 240 DYLHFKDSDRFPHELFFPNRAMEWENG-NWTKLMAEGHARISGPLYNLGFCLLAIVGVLG 298

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            A  RQ        +S  I+ G+      I       P    + Y+    +  + L +I 
Sbjct: 299 GAFSRQGYGRRIATVSF-IAAGLRIVGFAIEAGCANTPVLNIMQYVVPVALIWVCLSIIH 357

Query: 356 KK 357
           K 
Sbjct: 358 KN 359


>gi|16125936|ref|NP_420500.1| hypothetical protein CC_1691 [Caulobacter crescentus CB15]
 gi|221234699|ref|YP_002517135.1| hypothetical protein CCNA_01762 [Caulobacter crescentus NA1000]
 gi|13423102|gb|AAK23668.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220963871|gb|ACL95227.1| hypothetical membrane spanning protein [Caulobacter crescentus
           NA1000]
          Length = 379

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 136/361 (37%), Gaps = 7/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E Y+ R +    L++   +V +A + + L   +++    +S  + LKI    +P +
Sbjct: 1   MRLIERYLFRQLLGPTLLATAALVALALLARSLSEFDVLVEQRQSALVFLKIILLALPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     L  ++   E+++    G SR  +I P + LA++ ++   IS   
Sbjct: 61  LGIMMPLALFVAALVALNRLHTEQEIVVCFAGGMSRWRVISPAMRLAVIAALISLISGLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P     I++ + + +  +  + ++   F      L +     + +N +Q +FI     
Sbjct: 121 LQPWSARQIRETAFQIKTDVAATLVQPGQFTEPGPGLTVYAQSIDRDNKIQNLFIHQELP 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSS 236
                 Y ++   I        +I+  G   + S     +    F  YT    S   +  
Sbjct: 181 NGAASTYSSREAEIATRKGEPVLIMRHGSNQQFSRDG-VLQYTSFDEYTFDLSSLFHSDE 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +  K  D+    L  P+     +     +   +E H R    L+ +    +++ A    
Sbjct: 240 LLHYKIADRYPHELFFPDLTQ-EWEQRNKDKLLAEGHSRFAGPLYNIALMSMALAAVLGG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +  R         +  + +  V      +    E +P+   + Y+     ++  +  I +
Sbjct: 299 SFSRMGYGKRIAAVG-AAAAIVRIVGFGVQAACEDDPWLNVLQYIVPLAATAWAMSQIFR 357

Query: 357 K 357
           +
Sbjct: 358 Q 358


>gi|149914658|ref|ZP_01903188.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Roseobacter sp.
           AzwK-3b]
 gi|149811451|gb|EDM71286.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Roseobacter sp.
           AzwK-3b]
          Length = 380

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 131/353 (37%), Gaps = 6/353 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L      F    L +V I W+ + ++  + +    +   + L+ +   +P V+ ++ P 
Sbjct: 1   MLSQFMVLFGFFALVLVSIFWINKAVRMFDRLIGDGQPAWVFLEFTALTLPGVIGVILPM 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                T  V   ++  +EL ++  TG S   L++PV+   IL+++ + +  + + P   S
Sbjct: 61  AAFAATVYVTNRLSTESELTVVQATGYSPWRLMRPVIVFGILIALMMSLLTHFLIPSSLS 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            ++    +    +T   L E  F      +   I    P+  L  +F+ D RD++    Y
Sbjct: 121 QLRLRQDEVSQNITAKLLTEGEFLHPAPGITFYIRDITPDGELHNVFMSDRRDSENTMTY 180

Query: 188 YAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSSTIVLKA 242
            +    +  D      +++ DG           +    F  ++    +   + +T + K 
Sbjct: 181 TSNRAYLIQDPEGGTKLLMVDGLAQTVRRDGNRLFTTHFNDFSYDISALIASEATSLDKV 240

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              +   +        +     +     E + R +Q L  ++  +I   +       R  
Sbjct: 241 TFAHTLDIARDPRAVADRTLSTVSQVIFELNNRFSQPLLCIVAAVIGFASLLLGGFSRFG 300

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                I ++ ++   +    S +   +  +    P++YL     + +  +++ 
Sbjct: 301 -VWRQILLAFTLLIVIKLVESRVSGLVLAHSDLWPLMYLPAALGALVTAVLLH 352


>gi|298506037|gb|ADI84760.1| membrane protein, YjgP-related [Geobacter sulfurreducens KN400]
          Length = 388

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 124/347 (35%), Gaps = 10/347 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    YI       F +      F+  + ++L+   +V +       + ++  Y++P+  
Sbjct: 3   RLLFRYICTETAVPFALGLTVFTFVLLMGRLLKLAEMVFARGVPFLDVTRLILYMLPSFF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +     +  ++ ++E+  +  +G S  T+  PV+   ++            
Sbjct: 63  LVAIPMAFLLAVLLAMGRLSADSEVTAMKASGMSIGTIAVPVIAFGVITYAATTFVSVYA 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSRD 180
            P   +  K+             + E +F      L I +  ++P +  + GI I D R+
Sbjct: 123 LPWGNTAFKKFLHGVIETRAAMSITEKVFNDEFPGLVIYVDGFDPKSGRISGILIHDERN 182

Query: 181 TQTHKIYYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  +A SG +  + +  I    LN+G +HR    +    +++F SY L        
Sbjct: 183 PDEPSTIFAASGQLATNPEERIVRLRLNNGGIHRG-IGTGGYRLVEFTSYDLSIALQREQ 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  +      L     +P  +P+L+     E HKR       V+F +I++    + 
Sbjct: 242 QKARLNEEDMTLGELLARMKSPGEQPKLVREMHFELHKRFALPFACVVFAVIAVPLGIQN 301

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
               +       F +  I   +++        + +       + +++
Sbjct: 302 QRSGRAGG----FAAGIILLMLYYILMSAGKTVNEKGIAPAFVAVWI 344


>gi|218672884|ref|ZP_03522553.1| putative permease protein [Rhizobium etli GR56]
          Length = 380

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 117/322 (36%), Positives = 198/322 (61%), Gaps = 5/322 (1%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P+++P+V PF   +  T 
Sbjct: 3   FLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSIIPVVLPFALVIAITQ 62

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
            LT+MN ++EL +ID  G  R  LI+P+L LA ++S+F F  +NI+EP+ ++  +Q+ A+
Sbjct: 63  TLTTMNNDSELTVIDAAGARRSILIRPILLLAAVISVFSFFVDNIVEPRAKTVARQMIAE 122

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSID 195
               L  S +EE  F ++D+ LY++ISK      L+G+F+ D RD     IYYA+ G++D
Sbjct: 123 TYADLLSSVIEEKTFRKIDEGLYVQISKRLAGRMLKGLFVADERDPAYELIYYAKEGAVD 182

Query: 196 LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTIVLKANDQNLSFLLNP 253
                +I++DGEVHRK+P   ++S++ F SY+      + N     LKA+D++L FL NP
Sbjct: 183 DTGTTLIMHDGEVHRKTPDG-NVSVINFDSYSFDLSDMTENRGQATLKASDRDLWFLFNP 241

Query: 254 NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLS 313
           +PN+ ++     ++YR+E H+RLT W+ PV+F L S+  A       +  ++HP+  +L+
Sbjct: 242 DPNDKDFTIR-PQSYRAELHRRLTDWILPVVFALFSLAIAGDAR-SHREARLHPMVSALA 299

Query: 314 ISFGVFWGFSYIIHKIEQNPYY 335
            +F   W   Y  ++I+ +P  
Sbjct: 300 YAFAFRWAAFYAANQIDTDPGI 321


>gi|148265754|ref|YP_001232460.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
 gi|146399254|gb|ABQ27887.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
          Length = 389

 Score =  133 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 141/356 (39%), Gaps = 6/356 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K+  LYI + I   FL+      F+  + ++L+   +V +    L  +L++  YL+P+ L
Sbjct: 3   KTLYLYIFKEIPPPFLLGVATFTFVLLMGRLLRLAEMVVTKGVPLADVLRMVFYLLPSFL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +        ++ ++E+  +  +G S   L+ PV   A++  +         
Sbjct: 63  LVTIPMAFLLAILLAFGRLSGDSEITAMKASGVSLYGLLPPVFCFALIAYLAGAFITVYA 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRD 180
            P   ++ K+L  +   A     ++E +F      L I   +YN    T+ GI I D RD
Sbjct: 123 VPWGNTSFKKLLVEVVEARASLGIKEKIFNDDFPGLVIYTDRYNQQKQTMSGILIQDERD 182

Query: 181 TQTHKIYYAQSGSIDLDRQAI----ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  YA+SG I+ D         L++G +HR +       +++F++Y L      ++
Sbjct: 183 PLEPSTIYARSGVINSDPATKSIRLRLDNGSIHR-TQGKTGYRLVEFRNYDLNINLNQAA 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V K         L  N  +  +  +++   R E+H+R +     +IF L+ +    + 
Sbjct: 242 QTVNKNELDMSLAELRANLASGRFDAKMMRDMRLEYHRRFSLPFACLIFALVGMPLGIQN 301

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
               +          L   + V      +  +   +P         LF    I+L 
Sbjct: 302 QRSGKAAGFTMSIGLLLAYYIVLSAGKALGERELLSPLLAVWAPNLLFVSLGIYLF 357


>gi|258645769|ref|ZP_05733238.1| membrane protein, YjgP/YjgQ family [Dialister invisus DSM 15470]
 gi|260403140|gb|EEW96687.1| membrane protein, YjgP/YjgQ family [Dialister invisus DSM 15470]
          Length = 361

 Score =  133 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/362 (12%), Positives = 109/362 (30%), Gaps = 10/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        I      +L+  + V+    S    LKI    +P 
Sbjct: 1   MRILDKYILKEFLGPFLFGVAAFTAIFLGADTLLKIADYVTKYGASSTAALKIFILALPR 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++    P    +      + ++ ++EL+++  +G S   L+ P+  L  L+S+       
Sbjct: 61  IIVYTFPMAVLLGALMATSRLSGSSELIVMRTSGQSFSRLVMPIFILTFLISLCAVAFNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEEN---LFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + P      +Q+            + ++      +     ++  ++       +   I 
Sbjct: 121 YVVPWTNRKYEQVINIEIKRNLNPGVTDHVILRDVQNGKIAHLLYARRYNPENKKLENIT 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS-KDISIMKFKSYTLQTESANS 235
                    I    + +         + +G ++             K +           
Sbjct: 181 IQEFQNEAVIRVENAPNAVWKDGKWFMENGTIYDLGEDGISRTMRFKNQFIPYGQSPETI 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  ++  +  L            E       E H+R +      +FGL+      +
Sbjct: 241 QKEHKDYDEMTIRELFTARKAYEAA-HEDATAIVMEIHRRFSLPFASFVFGLVGAPLGVQ 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI-EQNPYYIPILYLFLFCISSIFLLMI 354
           R    +        +S+ I F  +   +++           +  ++L         + +I
Sbjct: 300 RE---RSSSSIGFGLSVVIIFVYYAVMTFLEALGKGHVISAVAAVWLPNLIALICAVYLI 356

Query: 355 KK 356
           K+
Sbjct: 357 KR 358


>gi|197119769|ref|YP_002140196.1| membrane protein [Geobacter bemidjiensis Bem]
 gi|197089129|gb|ACH40400.1| membrane protein, YjgP-related protein [Geobacter bemidjiensis Bem]
          Length = 391

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 135/363 (37%), Gaps = 17/363 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K+   YI + I   FL+  +   F+  + + L+   +V       + ++++  YL+P   
Sbjct: 7   KTLYAYIFKEIPTPFLVGMVTFTFVLLMGRFLKLAEMVVEKGIPFSDVVRMVAYLLPPFW 66

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +        ++ ++E+  + + G S   L+ P +  A   ++         
Sbjct: 67  LFTIPMALLLAMLLAFGRLSGDSEITAMKSCGISLYGLLPPPMLFAACATLACLWVTVYA 126

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSRD 180
            P   S  K+L  +   +     ++E +F      + +     +      G  I  D RD
Sbjct: 127 VPWGNSGFKKLMVEIAQSSAGIAIKEKIFNNAFPGMVVYTQSLDTKAQTMGGVIVHDERD 186

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN-S 235
            +T    +A +G++  D ++      L +G +HR         +++F+ Y L+   A+ S
Sbjct: 187 PRTPTTIFASTGALVSDPKSNSMEFQLRNGSIHRAEEQGG-YRMVQFQEYNLRVALADGS 245

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +    K ++  L  LL+P            +    E+H RL       +F L++I     
Sbjct: 246 NKATRKVSEMTLDELLHPPKGTQQKEIISRD---LEYHSRLALPFSCFVFTLLAIPLGI- 301

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCISSIFLL 352
               R+  K     +S+ +    +   S     + +     P+L  +   L  + +   L
Sbjct: 302 --QNRRSGKAAGFSLSIGVILLYYVTLSAF-DTLGERGTLPPLLAGWSPNLIFLLAGAYL 358

Query: 353 MIK 355
             K
Sbjct: 359 FKK 361


>gi|90419502|ref|ZP_01227412.1| possible permease [Aurantimonas manganoxydans SI85-9A1]
 gi|90336439|gb|EAS50180.1| possible permease [Aurantimonas manganoxydans SI85-9A1]
          Length = 392

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 82/362 (22%), Positives = 171/362 (47%), Gaps = 7/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI +        S   +V I W++Q L RI++V +S  + + +  I+  L+P +
Sbjct: 1   MTILERYIFKRAFVYAASSLTSLVLIVWIVQALSRIDVVKTSASAASNIFWIALMLLPDL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V PF   +     L S+N ++E  +I   G S+  + +P++ L +L  + + +  N+
Sbjct: 61  FAGVLPFALLIGAIQALNSLNSDSERAVISAAGASQAVIARPIVALGLLGGLIMLLIGNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S  +         +   +L+   F ++ D + I I       T++ + I D+RD
Sbjct: 121 VGPASMSAFQNGIRSINADMITLFLKPGRFEQVQDGIVISIGDV-NGATVESLVIADTRD 179

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST- 237
             +   Y+A+   I  +  +   +L DG++HR++     +S+++F++Y     +   +T 
Sbjct: 180 PASDLTYFAREAKIIDEDASSLLLLFDGQLHRRNTADNSVSVIQFQTYAFDLAALRPATD 239

Query: 238 -IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              ++A++++ + L+ P+PN+  Y+     ++  E   R+T WLF + F L +IV A + 
Sbjct: 240 NSWVRASERSTAALIWPDPNDGLYQER-PHSFTEELTDRMTNWLFAIAFVLWAIVVAGQP 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +  RQ      + + L     +       + +IEQ  +++ I YL       +  ++I +
Sbjct: 299 STNRQG-TGPAMTVGLCGGLVLKAAGFVTLSQIEQGVFWVVISYLLPLAAIVLNSVLIWR 357

Query: 357 KY 358
            +
Sbjct: 358 NF 359


>gi|221639315|ref|YP_002525577.1| permease Yjgp/YjgQ family protein [Rhodobacter sphaeroides KD131]
 gi|221160096|gb|ACM01076.1| Permease YjgP/YjgQ family protein [Rhodobacter sphaeroides KD131]
          Length = 364

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 130/352 (36%), Gaps = 7/352 (1%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           F    L +V + W+ + +   + + S  +S  + L+ S   +P V+ +V P      T  
Sbjct: 4   FGFFSLVLVLVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNVIRLVLPLSAFAATIY 63

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
           V+  +++ +EL+++  TG S   L +PV++  +++++ + +  N++ P  R+T+   SA+
Sbjct: 64  VVNRLSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNLLVPASRATLSARSAE 123

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSID 195
                T  +L +  F    D + + I +      L+ + +VD RD      Y A+   + 
Sbjct: 124 ISQNATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRDPARSTAYTARRALLV 183

Query: 196 LDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSSTIVLKANDQNLSFLL 251
                   ++ DG     +   + + + +F   T         S        +     LL
Sbjct: 184 RTDTTPKLLMIDGSAQTLTREGRRLELTRFDDVTYDLGAFMTGSGPKRRVLEELPTMTLL 243

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
            P  +              E H R+ Q        LI   A    +  R       I  +
Sbjct: 244 APTADVLEETRSTRAAALYEGHSRIGQPFLGFASSLIGFAALLLGSFSRFG-LWWQILFA 302

Query: 312 LSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF--CISSIFLLMIKKKYTKI 361
           + +   V             +    P+ Y          I LL I ++  ++
Sbjct: 303 VLLLIVVQTINVAASGVGVTDEQLWPLAYAAPVTGFAIGILLLWIGQRPRRL 354


>gi|56751017|ref|YP_171718.1| hypothetical protein syc1008_d [Synechococcus elongatus PCC 6301]
 gi|81299323|ref|YP_399531.1| hypothetical protein Synpcc7942_0512 [Synechococcus elongatus PCC
           7942]
 gi|56685976|dbj|BAD79198.1| hypothetical protein YCF84 [Synechococcus elongatus PCC 6301]
 gi|81168204|gb|ABB56544.1| conserved hypothetical protein YCF84 [Synechococcus elongatus PCC
           7942]
          Length = 394

 Score =  132 bits (331), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 54/370 (14%), Positives = 127/370 (34%), Gaps = 14/370 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTV 60
              + YILR +   FL        +   I ++ + +  V+ +   L++  ++    +P  
Sbjct: 28  SIMDRYILREMLGPFLFGVGAFTSVGLSIGVVFELVRQVTEAGLPLSVAAQVFLLKMPDF 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +        ++ ++EL+ + + G S    I P + ++I+++   F     
Sbjct: 88  LVLAFPMSMLLSALMAYNRLSSDSELIALRSCGISSYRFILPGILMSIVVTGMTFAFYES 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL------YIKISKYNPNNTLQGIF 174
           + P      +     A         E+N       D        I  ++      ++G+ 
Sbjct: 148 VVPAANFQAQVTLQTALNQTRPQLEEKNNIVYQQFDRKTSELARIFYARRYDGEQMRGLT 207

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           I+D    +  +I  A++G      Q     +G ++  +P      I  FKS         
Sbjct: 208 ILDFTRGELSQIISAETGVWHPGDQLWEFRNGTIYGVAPDGSYSGIATFKSQEFTIPETP 267

Query: 235 SSTIVLKAND-QNLSFLLNPNPNNPNYRPE--LLETYRSEFHKRLTQWLFPVIFGLISIV 291
            S      ++ Q  +  +               +  +     ++L      V FGLI   
Sbjct: 268 LSIASQSRDETQMNATQIWQYLRVLRQTNNTADIRKWEVRLQQKLALPFVCVAFGLIGAS 327

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                   ++  +     IS+ I F  ++  +++   +  N     +L  +   +  + +
Sbjct: 328 LGTAP--NQRTGRATGFGISVLIIFS-YYLLAFVTGALGINGTLPTLLAGWFPWLLGMGV 384

Query: 352 -LMIKKKYTK 360
            L + ++  +
Sbjct: 385 GLYLLRQTAR 394


>gi|332558334|ref|ZP_08412656.1| permease [Rhodobacter sphaeroides WS8N]
 gi|332276046|gb|EGJ21361.1| permease [Rhodobacter sphaeroides WS8N]
          Length = 364

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 129/352 (36%), Gaps = 7/352 (1%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           F    L +V + W+ + +   + + S  +S  + L+ S   +P V+ +V P      T  
Sbjct: 4   FGFFSLVLVLVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNVIRLVLPLSAFAATIY 63

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
           V+  +++ +EL+++  TG S   L +PV++  +++++ + +  N++ P  R+T+   SA+
Sbjct: 64  VVNRLSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNLLVPASRATLSARSAE 123

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSID 195
                T  +L +  F    D + + I +      L+ + +VD RD      Y A+   + 
Sbjct: 124 ISQNATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRDPARSTAYTARRALLV 183

Query: 196 LDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSSTIVLKANDQNLSFLL 251
                   ++ DG     +   + + + +F   T         S        +     LL
Sbjct: 184 RTDTTPKLLMIDGSAQTLTREGRRLELTRFDDVTYDLGAFMTGSGPKRRVLEELPTMTLL 243

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
            P                 E H R+ Q        LI   A    +  R       I  +
Sbjct: 244 APTAEVLEETRSTRAAALYEGHSRIGQPFLGFASSLIGFAALLLGSFSRFG-LWWQILFA 302

Query: 312 LSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF--CISSIFLLMIKKKYTKI 361
           + +   V             +    P+ Y          I LL I ++  ++
Sbjct: 303 VLLLIVVQTINVAASGVGVTDEQLWPLAYAAPVTGFAIGILLLWIGQRPRRL 354


>gi|126725340|ref|ZP_01741182.1| Predicted permease [Rhodobacterales bacterium HTCC2150]
 gi|126704544|gb|EBA03635.1| Predicted permease [Rhodobacterales bacterium HTCC2150]
          Length = 367

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 137/351 (39%), Gaps = 5/351 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L  +  +F      +V + WV + +     + S   +  + L+ +   +P V+ +V P 
Sbjct: 1   MLSQLTVTFGFFAFILVAVYWVNRAIVLFEDLISDGHTALVFLEFTALALPNVILLVLPV 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              + +  V   +   +E++++ + G S   L+ P L   + + + + I  +I+ P  R+
Sbjct: 61  AGFVASIYVANRLISESEMVVMQSAGHSAKRLMVPALIFGVGIFVMMSILSHILVPISRT 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            + +   +    +T  +L    F    +DL I + +++    L+ I + D R      IY
Sbjct: 121 ALAEREGELSQDVTTQFLNAGRFVHPSNDLTIYVREFSETGELRDILLTDDRSANIQTIY 180

Query: 188 YAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTIVLKAN 243
            A    +         ++  G+    +  +  +S + F   T    +   +S   VL   
Sbjct: 181 TANRAFLIKTETGPRLVMLSGQTQTLNRTTDRLSFVTFTELTYDLSALIPSSKERVLNMR 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
           +     LL  +  + +        ++++ H R ++ L  +I  L+ +         R   
Sbjct: 241 ELFTPALLRGDQADLDRTNSTTAIFKAQAHGRFSKPLLGMILPLLGVAVMLVGGFNR-MG 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               I  S  I   V   F+   +    NP   P++YL +    ++  +++
Sbjct: 300 VSRQILASAVIIILVQMLFNAGENAAISNPTMWPMIYLPIVFAVALLWMLL 350


>gi|288572984|ref|ZP_06391341.1| permease YjgP/YjgQ family protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288568725|gb|EFC90282.1| permease YjgP/YjgQ family protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 365

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 138/358 (38%), Gaps = 14/358 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPTV 60
           +  + +IL+ +G SFL   L    I     +L +I +++     SL+ +LK+  Y +P+V
Sbjct: 4   RILDRFILKELGSSFLFGVLTFTVILVAGDLLFKIADMLIEKGVSLSTVLKLFVYKLPSV 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T      ++ N+E++ +  +G S   + +PVL  A L++I  F     
Sbjct: 64  VVLTLPMSCLLSTLLSFGRLSSNSEIVALKASGISFQRIARPVLLGASLVAISAFFMNET 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD-----DDLYIKISKYNPNNTLQGIFI 175
           + P      + +     +    + L E +F + +     + +           +++ + +
Sbjct: 124 VVPIANRAAENILMYDVVKQKPTLLRERMFLKDESGGKLNRVIYVGRLRTRKGSMENVLV 183

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY--TLQTESA 233
            +  D +  +I  A  G+         L+DG+        K   +  FK     L    A
Sbjct: 184 QEFDDGRLSRITTADEGNW--SDGVWTLSDGKAFSVDKEGKVGFLFGFKEQRLPLNLTPA 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +   LK ++ +LS L   +      +   L      +H  +      ++  LI     
Sbjct: 242 QVARSSLKPDEMSLSQL-REHIEIMKAQGANLIPLWVSYHLHIAIPWASLVLALIGAALG 300

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            +    R+        +S+ I F  +   S +   + ++ +  P++  +L  +  +  
Sbjct: 301 VRP--QRRGGMGVGFGLSVLIVFAYYVVMS-MGRALGESGHIPPLVAAWLANVVFLGF 355


>gi|220932597|ref|YP_002509505.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
 gi|219993907|gb|ACL70510.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
          Length = 1040

 Score =  132 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 138/361 (38%), Gaps = 2/361 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  ++YI++ +   FL+    I  I     + Q  +L+      + ++LK+  Y +P ++
Sbjct: 8   RIIDVYIIKEVLYPFLIGVSIIGVIMLSGLLRQLSDLIIIKKIPVAVVLKLLLYQLPEII 67

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P      T + +  +NR  E   +   G S   LI P+L L I++S   ++    I
Sbjct: 68  VQTFPIAILFATMSGMGRLNRENEFTALRMGGISLYRLILPLLILGIVISGMTYLLNEEI 127

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +   + +  K+ L      ++EN+FF+  D     + +++  + +    +V +   
Sbjct: 128 VPWTKHRAQNIIRKSVLKEVPPDIKENVFFKGPDGRLFYVGRFDKEDNIMKKIVVYTFKG 187

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI-VL 240
                    +   ++ ++  +L  G +HR +         +F    ++  +   +     
Sbjct: 188 DNGYPLIVTANLGEVYKEKWVLKKGFIHRYNGEGHLTMETRFDVMEIKINTEVHNFFADQ 247

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K  D+     L    +        + +   ++H +L+  L  +IF LI    +      R
Sbjct: 248 KTPDEMSREELKKEIDLFQNSGIDVHSLLVDYHLKLSMPLAALIFILIGTPLSLTSKDSR 307

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
               I  I +     F +    S+       +P     L   +F I  I LL+ ++ +  
Sbjct: 308 SFSIIFTIVVVFLYYFVMSLSRSF-GRNGRLDPVLAAWLPNIIFSIIGITLLIWRESWRN 366

Query: 361 I 361
           +
Sbjct: 367 L 367


>gi|86605895|ref|YP_474658.1| YjgP/YjgQ permease [Synechococcus sp. JA-3-3Ab]
 gi|86554437|gb|ABC99395.1| putative permease, YjgP/YjgQ family [Synechococcus sp. JA-3-3Ab]
          Length = 400

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/374 (13%), Positives = 118/374 (31%), Gaps = 19/374 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + YI+  +   F         +   V  + + + LV  +  SL+  L++     P ++
Sbjct: 27  LMDRYIISEMLLPFFFGVGAFTTLVMAVGSLFELVRLVVEAGLSLSAALQVFVLRAPGII 86

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      ++ + E+  +   G S   L+ P L L++L++   F+   ++
Sbjct: 87  VLTFPMSMLLATLLAYGRLSADNEITALRGCGVSLYRLVVPALLLSLLVTTLTFLFNELV 146

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL---------------YIKISKYNP 166
            P           +A         E  L+    + L                   ++   
Sbjct: 147 VPVSNRQAALTLNRALNRTPEFRRENILYQEFGEILAPEPDGTFSRRQGLTRQFYARSFD 206

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
              ++G+ ++D  +    +I  AQ G  D      +  +G  +  SP     +I  F   
Sbjct: 207 GQQMRGVIVLDLSNEALSQILLAQQGRWDPQENLWVFEEGTNYIVSPDGTYSNIATFARQ 266

Query: 227 TLQTE--SANSSTIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLFPV 283
            L+      + +  V    + N+  L        +    + +   +    ++       +
Sbjct: 267 ELRLPRAPLDLAQEVRSPEEMNIQELRRYIEVIASSGDLQGVRRLQVSLSQKYAIPFACL 326

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
            F LI    A +         +    + +   + + +    +       P     L  F+
Sbjct: 327 AFTLIGAPLALRPQRTSSSLGLGLSVLIIFAYYVLLFVSQALGQIGTLGPEVAAWLPNFI 386

Query: 344 FCISSIFLLMIKKK 357
                + LL    +
Sbjct: 387 CSAVGLGLLYRANR 400


>gi|17231561|ref|NP_488109.1| hypothetical protein alr4069 [Nostoc sp. PCC 7120]
 gi|17133204|dbj|BAB75768.1| alr4069 [Nostoc sp. PCC 7120]
          Length = 371

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/375 (12%), Positives = 129/375 (34%), Gaps = 22/375 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTVLP 62
            + Y+   +  +FL        I   I  + + +  V  S   ++I +++    +P  + 
Sbjct: 1   MDRYLTSELLPTFLFGVGAFSSIGVTIDAVFELVRRVVESGLPVSIAVQVFLLKLPNFIV 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    + T    + ++  +EL+ +   G S   ++   + L+ +++   F+    I 
Sbjct: 61  LAFPMSTLLATLMTYSRLSSESELIALRGCGVSVYRMVMTAVMLSFVVTGLTFLFNEQIA 120

Query: 123 PKCRSTIK------------QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL 170
           P                       +      +  ++E    +      +  +       +
Sbjct: 121 PAANYQATLTLDKALKSDKPTFKQQNIFYPEYRDIQEKDGTKNRILTRLFYADQFDGKRM 180

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
           +G+ I+D      ++I  A+S   +  +      +G ++  +P     +I++F+   L+ 
Sbjct: 181 KGLTIIDRSTDGLNQIVVAESAEWNGAQSIWDFYNGTIYLVAPDRSYRNILRFEKQQLKL 240

Query: 231 --ESANSSTIVLKANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
                + +       + N++  L   N        + +        ++       V+FGL
Sbjct: 241 PRTPLSLAEQSRDYGEMNIAQALDQLNIERLGGDRQKIRKLEVRIQQKFALPFVCVVFGL 300

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFC 345
           +            +  K     IS+ + F  ++   +I   + Q   + P +  +L  F 
Sbjct: 301 VGAAMGTIPQ---RTGKGTSFGISVIVIFS-YYLLGFITGALGQAGIFSPFIGAWLPNFI 356

Query: 346 ISSIFLLMIKKKYTK 360
              + + ++ +   +
Sbjct: 357 GLGVGIFLLVRVAQR 371


>gi|282856200|ref|ZP_06265483.1| putative membrane protein, YjgP/YjgQ family [Pyramidobacter
           piscolens W5455]
 gi|282585959|gb|EFB91244.1| putative membrane protein, YjgP/YjgQ family [Pyramidobacter
           piscolens W5455]
          Length = 368

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/368 (16%), Positives = 131/368 (35%), Gaps = 13/368 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPTV 60
           ++ + +I+R +   FL   +    I     +L ++ +L+     SL +  ++  Y +P+V
Sbjct: 5   RTLDRFIMRELMGPFLFGVMAFTLIMVAGGLLFKLADLIIEQGVSLGVAGRLFIYELPSV 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + +    + M+ N+E++ +   G S   + +PVL  A+ +++        
Sbjct: 65  VVLTLPMSCLLASLLGFSKMSANSEIVALKAAGISFSRIGRPVLVAALGVTMLSLALNET 124

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-----YNPNNTLQGIFI 175
           + P  +   + +          + L+E +F R  D     + +          +     +
Sbjct: 125 VVPLGKIAAQNVMRYEVAREKPALLKEQVFLRSSDPSSEGLRRIVYINKLYARSGTMDDV 184

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY--TLQTESA 233
           V         +    +           L+DG+V            + FK     ++    
Sbjct: 185 VVQEFKGADLVRLTTARKGTWVDGVWYLDDGDVFEVKGRDTVELTLHFKRQALPIRLTPQ 244

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             S    K +D +   L+         + + LE     FH RL      VI  LI     
Sbjct: 245 QISRSTAKPDDMSCLELI-KYIEILRAQGKSLEPLWVAFHLRLAVPWACVILALIGAALG 303

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLL 352
            +    R+         S+ I F V++    +   + Q  +  P+L  +L   +     L
Sbjct: 304 VRPM--RKGGASVGFGQSILIVF-VYYVVMSMGRSLGQAGHIPPVLGAWLPNILFFAGAL 360

Query: 353 MIKKKYTK 360
           ++ ++  +
Sbjct: 361 LLARRADR 368


>gi|37522902|ref|NP_926279.1| hypothetical protein gvip459 [Gloeobacter violaceus PCC 7421]
 gi|35213904|dbj|BAC91274.1| ycf84 [Gloeobacter violaceus PCC 7421]
          Length = 384

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/372 (12%), Positives = 136/372 (36%), Gaps = 20/372 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +K  +LY++  +   FL        +   V  + + +  +  +  S+ +  ++    +P+
Sbjct: 14  LKIVDLYLVSELLLPFLFGVATFASLGMIVGSLFELVRAMLDNGLSVTVAAQVFALRLPS 73

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+ +  P    + T      ++ + E + +   G S   L+ P L + +L++   F+   
Sbjct: 74  VIVITFPTAMLLATLLAYARLSGDAETVAMRACGMSVYRLVLPALAVGLLVTGATFMCNE 133

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-------------IKISKYNP 166
           ++ P   +   +L  +A       + ++N+ +     +              +  ++   
Sbjct: 134 LVVPASNAEASRLLFQAIDRDKPDFQKDNIIYPEYGFVTPRDGRPTYHTLVRLFYARQFA 193

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
              ++ + ++D      +++  A +   D    +  L DG V+  +P     ++++FK  
Sbjct: 194 GGIMRELTVLDYSQDAINQVITAAAAVYDNRSGSWTLQDGTVYVVAPDGSYRNVLRFKRQ 253

Query: 227 TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
            ++              +      L+          + + T +    ++    +   +F 
Sbjct: 254 QVKLSERPEQFGGGARPEDLPIAQLSDYIRRLELSQQQVRTLQVSLQQKYAIPVTCFVFA 313

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLF 344
           L+      +R    +      + +S+ I FG ++   ++   + Q     P L  +    
Sbjct: 314 LVGATLGLRRV---RTSNALGLGLSILIIFG-YYLLMFVAQALGQTGVIAPWLGAWAPNL 369

Query: 345 CISSIFLLMIKK 356
              ++ +L++ +
Sbjct: 370 ATGALGVLLLWR 381


>gi|75907859|ref|YP_322155.1| permease YjgP/YjgQ [Anabaena variabilis ATCC 29413]
 gi|75701584|gb|ABA21260.1| permease YjgP/YjgQ [Anabaena variabilis ATCC 29413]
          Length = 391

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/377 (12%), Positives = 131/377 (34%), Gaps = 22/377 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTV 60
              + Y+   +  +FL        I   I  + + +  V  S   ++I +++    +P  
Sbjct: 19  TIMDRYLTSELLPTFLFGVGAFSSIGVTIDAVFELVRRVVESGLPVSIAVQVFLLKLPNF 78

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T    + ++  +EL+ +   G S   ++   + L+ +++   F+    
Sbjct: 79  IVLAFPMSTLLATLMTYSRLSSESELIALRGCGVSVYRMVMTAVMLSFVVTGLTFLFNEQ 138

Query: 121 IEPKCRSTIK------------QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN 168
           I P                   +L  +      +  ++E    +      +  +      
Sbjct: 139 IAPAANYQATLTLDKALKSDKPKLKQQNIFYPEYRDIQEKDGTKNRILTRLFYADQFDGK 198

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            ++G+ I+D      ++I  A+S   +  +      +G ++  +P     +I++F+   L
Sbjct: 199 QMKGLTIIDRSTDGLNQIVVAESAEWNGAQSIWDFYNGTIYLVAPDRSYRNILRFEKQQL 258

Query: 229 QT--ESANSSTIVLKANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
           +      + +       + N++  L   N        + +        ++       V+F
Sbjct: 259 KLPRTPLSLAEQSRDYGEMNIAQALDQLNIERLGGDRQKIRKLEVRIQQKFALPFVCVVF 318

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFL 343
           GL+            +  K     IS+ + F  ++   +I   + Q   + P +  +L  
Sbjct: 319 GLVGAAMGTIPQ---RTGKGTSFGISVIVIFS-YYLLGFITGALGQAGVFSPFIGAWLPN 374

Query: 344 FCISSIFLLMIKKKYTK 360
           F    + + ++ +   +
Sbjct: 375 FIGLGVGIFLLVRVAQR 391


>gi|167622903|ref|YP_001673197.1| permease YjgP/YjgQ family protein [Shewanella halifaxensis HAW-EB4]
 gi|167352925|gb|ABZ75538.1| permease YjgP/YjgQ family protein [Shewanella halifaxensis HAW-EB4]
          Length = 371

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 133/365 (36%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  +P +  
Sbjct: 2   IVFRYLIREVFKAQIAVLLVLLAIFISQHFVRVLADASDGEFPASLVMTLLGLNMPFLTV 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M    E++I    G S   + +  L LA++  +F       + 
Sbjct: 62  LVLPLSLFLGILLAHGRMYAENEMVIFHGVGISEWYITRVTLLLAVMNMVFTAFLSIYVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-----VD 177
           P       Q+   AQ     + L +  F    +   +   +    +              
Sbjct: 122 PWAEERQNQVLEHAQSEAGLAALTQGRFQTSPNGRAVLFVERIGRDNQLDKVFVAQLPEP 181

Query: 178 SRDTQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             +T    +  A++G +  D    Q + L DG  ++ SP   D  +++F  Y +Q +   
Sbjct: 182 DDETGVANVVVARTGKVLEDETGGQRLQLEDGVQYQGSPKRVDYQVVEFGGYQMQIKEQE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +   +  L++ +    +          +EFH RL   L   +  LI++  A 
Sbjct: 242 VGERRRKLSAMPIGELMDIDTPEAS----------AEFHWRLAIPLAIPLMTLIAVPMA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +F ++ +  G F         +     P Y+ + ++    ++   LL
Sbjct: 291 --RVNNRQGKFAKMFPAILLYLGYFGLMVAGRKSLEDGVIPQYLGMWWIHASALAIGILL 348

Query: 353 MIKKK 357
           + K++
Sbjct: 349 LGKER 353


>gi|329850877|ref|ZP_08265722.1| hypothetical protein ABI_37960 [Asticcacaulis biprosthecum C19]
 gi|328841192|gb|EGF90763.1| hypothetical protein ABI_37960 [Asticcacaulis biprosthecum C19]
          Length = 385

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 134/353 (37%), Gaps = 8/353 (2%)

Query: 12  IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAM 71
           +      +   +  IA + Q L +  LV    +S    ++++   +P +  ++ P    +
Sbjct: 1   MIVPVAGAVAALTAIALISQSLTQFELVVERGQSAWTFIRVTLLSMPLLSGLIFPIALFV 60

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
            T   LT +    E      +G S   +  P++ + +   +F   S   ++P    ++++
Sbjct: 61  GTLVALTRLQGEHEFTAAFASGMSLRQVSSPIIRIGVYFLLFSLASNLFLQPWSARSMRE 120

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-DSRDTQTHKIYYAQ 190
              K +  L  + ++E  F      L I + + + N+ L+ I+I   + +    + Y A+
Sbjct: 121 ELFKVKNDLVSTLVKEGEFSTSPSGLTIYVQRIDQNSLLRQIYIRIPATEGGADRTYVAR 180

Query: 191 SGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTIVLKANDQNLS 248
            G I       +L       +     ++  + F   ++      A+  ++  K +++ L 
Sbjct: 181 EGKITQVGTESLLILRNGSTQWVSGGELDHITFDETSIPISDYFASDDSLNFKESERYLH 240

Query: 249 FLLNPNPNNP----NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
            L  PN   P    NY  + +    +E H RL   L+ + F L++I+A       R    
Sbjct: 241 ELFFPNLALPGDGGNYERKNVGKLMAEGHARLASPLYNLSFVLLAIMAVLGGGFSR-GGY 299

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              I I+  ++         +     +      + YL       + + ++ K+
Sbjct: 300 TQRIAIAAGVAVTARLLGVVMQTIGAEAAILNILQYLVPLIPIIMCVRLLNKR 352


>gi|121534980|ref|ZP_01666798.1| permease YjgP/YjgQ family protein [Thermosinus carboxydivorans
           Nor1]
 gi|121306393|gb|EAX47317.1| permease YjgP/YjgQ family protein [Thermosinus carboxydivorans
           Nor1]
          Length = 361

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 111/355 (31%), Gaps = 4/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+ +   F+        +      + +    ++    S+  + K+  Y +P 
Sbjct: 1   MRILDKYILKEMLGPFIFGIAAFSSVFIGTSTLFRLARYITEYGASVYSVTKLFIYSLPG 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + +      ++ ++E+  + + G S   L  PV   A ++SI   I   
Sbjct: 61  IIVLTFPMSMLLASLLAFGRLSASSEITAMKSGGLSFFRLAAPVFIAAFVVSIVAVILNE 120

Query: 120 IIEPKCRSTIKQ--LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
            + P+  +  +        +              +  +   +  ++           +  
Sbjct: 121 AVVPRANNAYQNVLRYEIEKSRPKTQEHIVIKDVKDGEIERLTYARKFDEAANAMYAVTV 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +   +    +     D    I+  G ++  +P  +    ++F    +  E +    
Sbjct: 181 QEFDKGRLVRVENAEKAIWDNGRWIMESGIIYDVAPEGQLQRTLRFDKQFMPVEKSPREI 240

Query: 238 -IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               K  ++     L  +            TY  E H+RL      ++F LI      + 
Sbjct: 241 AREQKKPEEMTIKELKQHIKVLQREYVKTSTYEVELHQRLAIPAASLVFALIGTPLGLQP 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                   +    I + I + +   F+ +             +   +F I   FL
Sbjct: 301 HRSSSSIGLGISIIIIFIYYTIMTVFTALGQGGAIPAVLAAWIPNIVFIIIGAFL 355


>gi|85859086|ref|YP_461288.1| permease [Syntrophus aciditrophicus SB]
 gi|85722177|gb|ABC77120.1| permease [Syntrophus aciditrophicus SB]
          Length = 394

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 146/365 (40%), Gaps = 12/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+++ I + F +    + F+  + +ILQ ++L+ +    L+ + ++  +L+P+ 
Sbjct: 1   MKIINRYLVKEILQPFGIVLFVLTFVLLMGKILQLMDLMINKGVGLSHIARLILFLLPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     L  ++ + EL ++  +G S   L  P+L +A++  +    +   
Sbjct: 61  LVFTLPISLLVSVLIALGRLSSDNELTVLKASGISLYRLTPPILMIALVSFMLTAATTLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           + P   +  K L            ++E +F    + + +   K   +   ++G+ + D R
Sbjct: 121 LVPYSNTATKALIFNVARNKASIGIKEKVFNADFNGVVLYAEKVPSDGRFMEGVLVSDQR 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAI----ILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                    A+   +  D +++     L DG  +  +   K    M FK+Y +  +  +S
Sbjct: 181 TADEPGTIIAKKAFLVADPKSMTVTLRLEDGSTYFVAENMKIFRKMDFKTYDINLDLQSS 240

Query: 236 STIVLKAN-----DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           S+   K       +     L+  N  +     ++      E +++ +  L  ++F +++I
Sbjct: 241 SSDAEKMRTKALKEMTPRELIQ-NLKSGRLDDKIYRKTAMELYEKFSIPLSCLVFSILAI 299

Query: 291 VAADKR-ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
               K      + +      +++ + + +  G   ++     +P+    +   LF I+  
Sbjct: 300 PLGVKPHHRSVKSRGFTIGLMTVLLYYLLQLGCEGMVTVGRLSPFLGSWIPNILFTIAGT 359

Query: 350 FLLMI 354
            L  +
Sbjct: 360 VLYFM 364


>gi|56698597|ref|YP_168974.1| hypothetical protein SPO3780 [Ruegeria pomeroyi DSS-3]
 gi|56680334|gb|AAV97000.1| membrane protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 375

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 123/359 (34%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y LR +          +V + W+ + +   + + SS ++  + L+ +   +PT+
Sbjct: 1   MSKFDGYFLRQLLVLCGFFAFVLVGVFWISKAVSLFDRLISSGQTAMVALEFTALTLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P      T  V   +NR +E+ ++  TG+S   L +PV+   ++ +  L      
Sbjct: 61  VRTVMPMAAFCATVYVTNRLNRESEMTVMLATGSSPFRLARPVILFGLVCAAMLATITLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++   A+    +T   L +  F      + + I K + + TL  +++ D R 
Sbjct: 121 LRPAAMLRLEARQAEVAGDMTAQLLNDGQFMHPVKGVTVYIGKIDRDGTLNDVYLSDRRA 180

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST- 237
            +    Y +    +    + I  ++ +G   +     + +S   F+ ++    +      
Sbjct: 181 PERVVTYTSSKAFLARSGEQIALVMVEGTALQMETGRRTLSTTVFRDFSYDISALAKRDI 240

Query: 238 -IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                        L                    E  +RL+     V   LI        
Sbjct: 241 ERRQDIRGMPTLALATAFDGEGLAETYSRGEISEELQERLSWIGVSVAVTLIGFSTLMLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              R       +  + +    +    S     +  +P    + +       ++ +L +K
Sbjct: 301 TFSRFG-LWPQLIAAFAGLIALEGMRSTATAFVGSHPGLWWVQHAPALGGIALSILFLK 358


>gi|56479503|ref|YP_161092.1| hypothetical protein ebA7171 [Aromatoleum aromaticum EbN1]
 gi|56315546|emb|CAI10191.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 359

 Score =  130 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/360 (12%), Positives = 121/360 (33%), Gaps = 7/360 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ R I  +  M  L  + +      +  +++V      L+  L     LIP  +
Sbjct: 3   RVLTRYLAREIFGATAMVLLAFLGLFVFFDFINELDVVGKDGYELHHALIFVVMLIPGRV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    + T   LT++ R++E+ ++  +G S   +++ +  + ++  +  F+    +
Sbjct: 63  YELLPVAVLIGTLYALTTLARHSEITVMRVSGMSTPAMLRALGGIGVIFVVLTFVIGEYV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      +Q    A  +   + L   L+ +    +    +     +  +          
Sbjct: 123 APPAEQAAQQWRLTATHSAVSNQLRSGLWVKDGLRVVNVRTVLPDRSMEKVRIYDFDAQH 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
               I  A +G  D  +Q  +L      R      D+  +   ++         S +++ 
Sbjct: 183 ALLSISEAATGRYDAAQQGWLLEGVRQTRFLGDHTDVVDLTELTWRSDLTPQVLSVLMVV 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               +++ L     ++     +  + Y     K+L      ++   +++  +      R 
Sbjct: 243 PERMSVTTLF-AYISHLRENRQNADRYEIALWKKLVYPFAALVMMALALPFSFT--HDRM 299

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLLMIKKK 357
                 +F+ + +  G              N +   +  L         ++  L+ ++++
Sbjct: 300 GGVSMKVFLGVMLGIGFHLLNGLFSSLGVINSWQPALAALTPSALFLAAAAGMLVWVERR 359


>gi|83952306|ref|ZP_00961038.1| Predicted permease [Roseovarius nubinhibens ISM]
 gi|83837312|gb|EAP76609.1| Predicted permease [Roseovarius nubinhibens ISM]
          Length = 372

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 125/352 (35%), Gaps = 5/352 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L      F    L +V I W+ + ++  + + S  +S  + L+++   +P V+ +V P 
Sbjct: 1   MLSQFMVLFGFFALVLVSIFWINKAVRMFDRLISDGQSSFVFLELTALTLPGVIAVVLPI 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                   V   ++  +EL ++  TG S   L +PVL   ++++  + +  +++ P    
Sbjct: 61  AGFAGAVYVTNRLSTESELTVMQATGYSPWRLARPVLIYGVIVAAMMSLLTHVLVPTSLH 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            ++   A+    +T   L E  F      +   I +  P   L+ +F+ D RD Q   IY
Sbjct: 121 RLETRKAEVSRNVTAKLLTEGEFLHPAGGVTFYIREITPEGELRDVFLSDRRDIQAPVIY 180

Query: 188 YAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ 245
            ++   +  +      ++ +G           +    F  ++       S  ++   + +
Sbjct: 181 TSKMAYLVQEGGGTKLVMVNGLAQTAQTKGNRLFTTFFTDFSYDISGLISDDVINLTHAR 240

Query: 246 --NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             +   L+                   E H R  Q L  V+  LI           R   
Sbjct: 241 YASTPALMTRAAEIAQISGVSEGVVTLELHNRFAQALMCVVAALIGFATLLLGTYSRFG- 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               I ++  +   V      +   I   P   P+ Y        + +L++ 
Sbjct: 300 VWRQILLAFLLLVAVKLVEGTLTSPILSAPELWPLAYAPPAMGFVLVVLLLY 351


>gi|313892370|ref|ZP_07825962.1| permease, YjgP/YjgQ family [Dialister microaerophilus UPII 345-E]
 gi|329121341|ref|ZP_08249967.1| YjgP/YjgQ family permease [Dialister micraerophilus DSM 19965]
 gi|313119229|gb|EFR42429.1| permease, YjgP/YjgQ family [Dialister microaerophilus UPII 345-E]
 gi|327469750|gb|EGF15216.1| YjgP/YjgQ family permease [Dialister micraerophilus DSM 19965]
          Length = 361

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/364 (13%), Positives = 117/364 (32%), Gaps = 14/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        I      +L     ++    S    +KI    IP 
Sbjct: 1   MRILDKYILKEFLGPFLFGVAAFTAIFLGSDTLLSIAGFITKYGASSLSAIKIFILAIPR 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++    P    +     ++S++  +EL+++ N+G S + L  P+   + ++SI       
Sbjct: 61  IIVYTFPMAVLLGALMCMSSLSGASELIVMRNSGQSFLRLAMPIFIFSAIISICAIAFNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEE---NLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + P      + +            + +       +  + L++  +K     T +   I 
Sbjct: 121 FVVPWTNREYQYILDVEIKKNLNPDIVDNIVMKDIQDGNLLHLIYAKKYNPETKELKDIT 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESAN 234
                    +    S              G  +  +P   +   + F S  +    +   
Sbjct: 181 IQEFKDGKPVKIEMSPKAVWKEGVWDFKQGVAYDITPDGVE-HKLSFDSQAVPFIQKPDE 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                    + ++S L     +      +   ++  E HKR +  +  ++F +I      
Sbjct: 240 IKNSNNNVGEMSISEL-KKTADLLKSANQDPTSFYMEIHKRFSLPIASLVFAIIGAPLGI 298

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLL 352
           +    +QR      F    I   +++     +  + +     P   ++L       I   
Sbjct: 299 R----KQRSSSSIGFGISVIVIFIYYAVMTFMEAMGEGHILPPFAAVWLPDILTFLIGCY 354

Query: 353 MIKK 356
           ++++
Sbjct: 355 LVRR 358


>gi|239616611|ref|YP_002939933.1| permease YjgP/YjgQ family protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505442|gb|ACR78929.1| permease YjgP/YjgQ family protein [Kosmotoga olearia TBF 19.5.1]
          Length = 1466

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 128/355 (36%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    YI +    +F +     +    +  + Q  +L+      ++ L  +  Y +P  
Sbjct: 1   MRILIKYIFKQSMGAFFIGLGGFLIFVSLELLYQLSDLIVRYKVGIDKLFLLIYYNLPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     L+ M  + EL+ +   G +  T++ P +  A+LLS   ++  + 
Sbjct: 61  IVLGIPVGVLLAIFWTLSRMQSDNELIALQTHGITLKTVVLPFVIFAVLLSGITYLFNDY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P       +  A+         L+EN F       Y+ I K +P        ++    
Sbjct: 121 IVPYANRKAYEAQARFIYRRPEVTLKENAFMEDGKGRYLYIKKIDPETGELKKILLYDLS 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-TIV 239
               ++  A+S +   +    I++DG V            M F+S  L   S        
Sbjct: 181 GGKTRVTSAKSAT--KEGDKWIMHDGRVFELDSKGFLTFDMSFESLELDFGSDIQEYIRQ 238

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            K+  +  S  L     + +       +      ++ +  L P++  +I +  +    L 
Sbjct: 239 SKSPREMTSAELKKKIASFSRLGVRTSSLMVALQEKYSLSLAPLVIVMIGVPLSLIFNLR 298

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            +   +   FI + I  G     S +  +   NP Y P +   +F I+ I   ++
Sbjct: 299 SKSWSVILTFILIVIYQGSGAWLSAMGKEDLLNPAYAPWIPNIIFAITGIITYLL 353


>gi|110596903|ref|ZP_01385193.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
 gi|110341590|gb|EAT60050.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
          Length = 359

 Score =  129 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 127/359 (35%), Gaps = 6/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI R   ++F+ +    VF+  +I +++ ++ +     S+  ++      IP+ 
Sbjct: 1   MKILDRYIFRQFAKAFIFTSTTFVFLFILITMVEHLDDMMGRNLSIFQIIGYYLLSIPST 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + +  V   ++ ++EL  I + G S   L+ P L  A  ++    ++   
Sbjct: 61  VLVTAPVSSLLASILVAGRLSASSELSAIRSAGVSMRQLLYPFLAGASFIAAVNLVNSCW 120

Query: 121 IEPKCRS--TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           I P   S     +    ++                 + +    S  +  +T + + I + 
Sbjct: 121 IAPAAFSGIARFEREHLSKEPGKLPENRNMHLIEQGNRIVSIGSMGSDESTGKAVSIEEF 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                     A S S +      +L +  +   +  S+  S +  K   L     +    
Sbjct: 181 SGAHLVSRIDAASMSYNPKSGEWMLENAAIRSFTGGSEQYSFIGRKPVKLSISPRSLLEF 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L+ ++ N+S                L+    +F+ +L+     +I  LI +      A 
Sbjct: 241 NLQPDEMNVSRHYRYLTEKRQAGISGLDRSAVKFYTKLSLPFASLIVMLIGVPL---SAK 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            ++      I I+L   F +F G    +          P L  +L  I  + +  +  K
Sbjct: 298 KKRGGLASEITIALFFGF-LFIGLQKTVAIAGYQGAMNPALAAWLPNIIFLIVGYLIYK 355


>gi|145219259|ref|YP_001129968.1| permease YjgP/YjgQ family protein [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205423|gb|ABP36466.1| permease YjgP/YjgQ family protein [Chlorobium phaeovibrioides DSM
           265]
          Length = 360

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 118/362 (32%), Gaps = 7/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI +   ++F+ + +  V +  +I +++ +            ++      IP  
Sbjct: 1   MKILDRYIFQQFVKTFVFTTITFVSLFILINMVENLGDFMDRKLLFTDIVLYYLRAIPDT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + + +P    + +  V   +  ++EL  I + G S   L+ P L   I++S    I+   
Sbjct: 61  ILITSPVSSLLASILVAGRLAGSSELPAIRSAGVSMRQLLYPFLLGGIIISTLNIINSFW 120

Query: 121 IEPK---CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
           + P         ++           +             +             + + I +
Sbjct: 121 LAPIAAVHNHAFERDHLGKSRRNGAAEGSNLHIIEPGSRVVTIGRLNTSFTGAKEVSIEE 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
              T       A+S   D   +   L +    R +P  ++       S  L     + + 
Sbjct: 181 FSGTGLRGRIDAESMRYDTGNKEWTLQNAAQRRFTPGGEEYQARPALSLPLSLTLKSLAE 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + L+ ++              +     LE    + H ++      +I  LI +      A
Sbjct: 241 LNLRPDEMQFIQHWQYLAEKKHAGFAGLERTMVKLHTKIAVPFASLIIILIGVPL---SA 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             ++      I ISL   F +F G    I     N    P+L  +L  +  + +     +
Sbjct: 298 KKKRGGLATEIGISLFAGF-LFLGLQKTIATFGYNGVVNPMLAAWLPNLLFLAIGYGIYR 356

Query: 358 YT 359
           Y+
Sbjct: 357 YS 358


>gi|253702060|ref|YP_003023249.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
 gi|251776910|gb|ACT19491.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
          Length = 391

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 131/363 (36%), Gaps = 16/363 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K+   YI + I   FL+  +   F+  + + L+   +V       + + ++  YL+P   
Sbjct: 7   KTLYAYIFKEIPTPFLVGMVTFTFVLLMGRFLKLAEMVVEKGVPFSDVARMVAYLLPPFW 66

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +        ++ ++E+  + + G S   L+ P L  A   ++         
Sbjct: 67  LFTIPMALLLAMLLAFGRLSGDSEITAMKSCGISLYGLLPPPLLFAACATLACLFVTVYA 126

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSRD 180
            P   S  K+L  +   +     ++E +F     D+ +     +      G  I  D RD
Sbjct: 127 VPWGNSGFKKLVVEIAQSSAGISIKEKIFNNAFPDMVVYTQSLDTKAQTMGGVIVHDERD 186

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN-S 235
            +T    +A +G++  D ++      L +G +HR         +++F+ Y L+   A   
Sbjct: 187 PRTPTTIFASTGALVSDPKSNSMEFQLRNGSIHRAEEKGG-YRMVQFQEYNLRVSLAEGG 245

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +    K ++  L  LL+P                 E+H RL       +F L++I     
Sbjct: 246 NKSPRKVSEMTLDELLHPPKGAQQKEILSRG---LEYHGRLALPFSCFVFTLLAIPLGI- 301

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIFLLM 353
               R+  K     +S+ +    +   S     + +     P+L  +          + +
Sbjct: 302 --QNRRSGKASGFSLSIGVILLYYVALSAF-KTLGERGMLPPLLAGWSPNLIFLMAGIYL 358

Query: 354 IKK 356
            KK
Sbjct: 359 FKK 361


>gi|119773933|ref|YP_926673.1| hypothetical protein Sama_0796 [Shewanella amazonensis SB2B]
 gi|119766433|gb|ABL99003.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 369

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 137/365 (37%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + ++ +   L ++ +      ++ +   S      ++++ + G  +P +  
Sbjct: 2   IVFRYLFKEVFKAQIAVLLVLLTVFISQHFVRVLADASDGEFPASLVVTLLGLNLPYLAV 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M    E+++    G S   + +  L LA+L  +F       + 
Sbjct: 62  LVLPLSLFLGILMAHGRMYAENEMVVFHGVGVSEWYVTRVTLLLAVLNMLFTGYLSLFVT 121

Query: 123 PKCRSTIKQLSAKAQLAL-TFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD---- 177
           P       Q+  KAQ      + ++       D    + + K   +N L+ +F+      
Sbjct: 122 PWAEERQNQVLEKAQSEAGLAALVQGRFQTSPDGRAVLFVEKIGKDNELEKVFVAQLPDP 181

Query: 178 SRDTQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             +     +  A  G +  D    Q + LNDG  ++ SP S D  +++F  Y +Q +   
Sbjct: 182 DDEHGQINLVSAAGGKVVEDASGAQQLKLNDGVRYQGSPKSLDYQVLEFGGYGMQIKEQE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +   L+ LL+          +      +E H R+   L   +  LI++  A 
Sbjct: 242 VDERRRKMSALPLNQLLD----------QNTPEAVAELHWRIAIPLAIPLMTLIAVPMA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ--NPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +  ++ +  G F         +E    P ++ + ++ L  +    +L
Sbjct: 291 --RVNVRQGKFAKMLPAILLYLGYFGLMVAGRKALEDEVVPAFMGMWWIHLSALVMGIML 348

Query: 353 MIKKK 357
           + K++
Sbjct: 349 LGKER 353


>gi|21674368|ref|NP_662433.1| hypothetical protein CT1549 [Chlorobium tepidum TLS]
 gi|21647546|gb|AAM72775.1| membrane protein, putative [Chlorobium tepidum TLS]
          Length = 384

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 116/357 (32%), Gaps = 6/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R     FL +      +  +I +++ ++       S   +L      +P   
Sbjct: 28  TIIDRYIARQFLTIFLFALASFAALFILINLVENLDRFLDRHISFGRILIYYLSGLPDTF 87

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            + +P    + +  V   ++  +EL  + + G S   L+KP L + + ++    I+   I
Sbjct: 88  LLTSPLSVLLASLFVTGKLSMQSELPALKSAGMSLSRLMKPFLLVTMAIAALNTINSCFI 147

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      K    +       +  E       ++ +           +   + +     +
Sbjct: 148 APAMYDWSKGFEKRYLKKQQDNGEEPLHIRESNNRILTVAKIGPDKKSATTVSLETFNGS 207

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI-SIMKFKSYTLQTESANSSTIVL 240
           Q      A S  I    +  I  + +    S  ++ + +     +  L         I  
Sbjct: 208 QIVSRIDADSLRIITRHKYWIFYNTKQRTFSKGAETLVTRAGADTLKLSLAPNTFKMIDT 267

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             ++ N+   ++            LE    + H +L   L  +I  LI +      +  +
Sbjct: 268 DPDEMNIVQHIDFIWQKARSGLPGLERATVKLHTKLALPLASMIIVLIGVPL---SSKKK 324

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKK 356
           +      I ISL I   ++ G    I  +  +    P+L  +L   +  I    + +
Sbjct: 325 RSGLAVEISISLLIG-LLYLGMLKTIGSLGYDGLLNPVLAAWLPDILFIIAGTFLYR 380


>gi|222054621|ref|YP_002536983.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
 gi|221563910|gb|ACM19882.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
          Length = 389

 Score =  128 bits (322), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 69/356 (19%), Positives = 136/356 (38%), Gaps = 6/356 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            +   YI + I   F +      F+  + ++L+  ++V +    L  +L++  YL+P+ L
Sbjct: 3   STLYRYIFKEIPPPFFLGVATFTFVLLMGRLLRLTDMVVTKGVPLGDVLRMILYLLPSFL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +        ++ ++E++ +  +G S   L+ PV  LA++  +         
Sbjct: 63  LVTIPMAFLLAILLAFGRLSGDSEIIAMKASGISLYGLLPPVFSLAVITYLAGAFITIYA 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRD 180
            PK  S  K L            ++E +F      + I    Y+     + GI I D RD
Sbjct: 123 VPKGNSAFKDLLVTVVENRVSLGVKEKVFNGDFPGIVIYCDGYDERTQVMSGIIIQDERD 182

Query: 181 TQTHKIYYAQSGSIDLDRQAI----ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                   A  G+I+ D  +      L  G +HR +   +   +++F  Y L    + +S
Sbjct: 183 PLEPSTIMAGHGTINADHASRSVRLHLASGSIHR-TAGREGYRLVQFSDYDLHINLSQAS 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V +         L  N N+ ++  +     R E+H+R +     +IF L+ +    + 
Sbjct: 242 QAVKRDERDMSLAELRTNWNSNHFDNKGRLEMRLEYHRRFSLPFACLIFTLVGMPLGIQN 301

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
               +          L + + +      +  K   NP+    +   LF    I+L 
Sbjct: 302 QRSGKAAGFAISIFLLLLYYIILSACKTLGEKELLNPFLAAWVPNMLFVAFGIYLF 357


>gi|157960739|ref|YP_001500773.1| permease YjgP/YjgQ family protein [Shewanella pealeana ATCC 700345]
 gi|157845739|gb|ABV86238.1| permease YjgP/YjgQ family protein [Shewanella pealeana ATCC 700345]
          Length = 371

 Score =  128 bits (322), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 133/365 (36%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  +P +  
Sbjct: 2   IVFRYLIREVFKAQIAVLLVLLAIFISQHFVRVLADASDGDFPASLVMTLLGLNMPFLTV 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M    E++I    G S   + +  L LA++  +F       + 
Sbjct: 62  LVLPLSLFLGILLAHGRMYAENEMVIFHGVGISEWYITRITLLLAVINMVFTAFLSIYVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-----D 177
           P       Q+   AQ     + L +  F    +   +   +    +       V      
Sbjct: 122 PWAEERQNQVLEHAQSEAGLAALTQGRFQTSPNGRAVLFVERIGRDNQLDKVFVAQLPDP 181

Query: 178 SRDTQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             +T    +  A++G +  D    Q + L DG  ++ +P   D  +++F  Y +Q +   
Sbjct: 182 DDETGVANVVVARTGKVVEDEIGGQRLQLEDGVQYQGNPKRVDYQVVEFGGYQMQIKEQA 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +   +  L++ +               +EFH RL   L   +  LI++  A 
Sbjct: 242 VDERRRKLSAMPIGQLMDID----------SPEATAEFHWRLAIPLAIPLMTLIAVPMA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +F ++ +  G F         +     P Y+ + ++    ++   LL
Sbjct: 291 --RVNNRQGKFAKMFPAILLYLGYFGLMVAGRKSLEDGVIPQYLGMWWIHASALAIGILL 348

Query: 353 MIKKK 357
           + K++
Sbjct: 349 LGKER 353


>gi|77165378|ref|YP_343903.1| permease YjgP/YjgQ [Nitrosococcus oceani ATCC 19707]
 gi|254434004|ref|ZP_05047512.1| putative permease, YjgP/YjgQ family [Nitrosococcus oceani AFC27]
 gi|76883692|gb|ABA58373.1| permease YjgP/YjgQ [Nitrosococcus oceani ATCC 19707]
 gi|207090337|gb|EDZ67608.1| putative permease, YjgP/YjgQ family [Nitrosococcus oceani AFC27]
          Length = 354

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 105/355 (29%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI + +    L+    ++ +   +Q +  +  V      +   L+ + Y IP  
Sbjct: 1   MKILDRYIAKAVISYTLLVLFILIALYTFLQFVTELEDVGEGDYGVMGALRYTTYSIPQH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + +   L  +   +EL+ +   G S   +    L   ++  I   +   +
Sbjct: 61  IYDLLPVAALLGSVLGLGYLAGQSELVAMRAAGFSVGRITLSALATGMIFVIVTVLMGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +    +L + A+         +  + R  ++                        
Sbjct: 121 VAPPAQQAANKLRSLAKTGHLSEDGGQGFWSRNGNNFNHVGRVLPNGQYEYIEIFEFDDQ 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   +  A       D     L D      S        +    +           +++
Sbjct: 181 RRLRIVTQAARAIYHKDG--WHLYDVTQRLISTKGITTRRLDEALWESGLNPEMLDVVMV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L            +  E YR  F  ++      +I   ++I          
Sbjct: 239 DPQQLSAWGLYR-YIGYLQKSKQAAEQYRQAFWSKIVAPFSTLIMMFLAIPFIFGPLRSV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +   +   + I F +F      +  +   P ++   +  L C++   +++ +
Sbjct: 298 SVGQRILVGALVGIGFFLFNRLFNQLGLVFDLPPWLGAAFPSLLCLALGVVMLRR 352


>gi|290968957|ref|ZP_06560492.1| YjgP/YjgQ family [Megasphaera genomosp. type_1 str. 28L]
 gi|290780913|gb|EFD93506.1| YjgP/YjgQ family [Megasphaera genomosp. type_1 str. 28L]
          Length = 362

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/365 (13%), Positives = 115/365 (31%), Gaps = 14/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        +      L +  ++++    S     K+    +P+
Sbjct: 1   MRILDKYILKEFIGPFLFGVCAFTAVFVGTGTLYRIASMINEYGASAAAAAKVLVLALPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    +        ++  +E++++   G   + L  PVL  A  +S+       
Sbjct: 61  IVVLTFPMSVLLGALMAFGRLSAASEIIVMRAGGQHFVRLAMPVLVAAFFISLGTTAFNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK---ISKYNPNNTLQGIFIV 176
            + P+  +   ++  +          +E++  +      I     ++       +   I 
Sbjct: 121 FVVPRANNAYNRIINEEIRHHALPVSQEHVIIKNVHGQNIYGLLYARQYDGTEKEFRDIT 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESAN 234
                Q   +   ++     + +  I++ G ++  S        M F++  L        
Sbjct: 181 VQEFEQDRLVRVEKADRAKWNGKKWIVHQGSIYDVSSNDNTSRTMTFENQELPFMQRPEK 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K  +  +  L              +   + E + R    L  ++  LI      
Sbjct: 241 VQEAQKKPEELTIREL-RQQIRVLTAHGVDVNKLKVEMYNRFALPLASLVCALIGAPLGL 299

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL---FCISSIFL 351
                ++        IS+   F +++    +   +       P    FL    C S    
Sbjct: 300 ---QKQRGSSSIGFGISVVTIF-IYYSIMTLADALGNGGTIAPAAAAFLPDIICGSVGIF 355

Query: 352 LMIKK 356
           LMI+K
Sbjct: 356 LMIRK 360


>gi|119511693|ref|ZP_01630798.1| hypothetical protein N9414_06074 [Nodularia spumigena CCY9414]
 gi|119463678|gb|EAW44610.1| hypothetical protein N9414_06074 [Nodularia spumigena CCY9414]
          Length = 371

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 127/356 (35%), Gaps = 20/356 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTVLP 62
            + Y  + +   FL        +   I  + + +  +  S   ++I +++     P  + 
Sbjct: 1   MDRYFTKELVAPFLFGVGAFSSLGVTIDAVFELVRKIVESGLPISIAIQVFLLKFPNFIV 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    + T    + ++  +EL+ +   G S   ++   + L+++++   FI    I 
Sbjct: 61  LAFPMSTLLATLMTYSRLSGESELIAMRGCGVSVYRMVLTAVMLSLVVTGITFIFNEQIA 120

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI------------KISKYNPNNTL 170
           P           KA  +   ++ + N+F+    D+                +       +
Sbjct: 121 PAANYQATVTLEKALKSDRPTFQQSNIFYPEYRDVEQPDGSRNRILARLFYADQFDGKQM 180

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
           +G+ I+D      ++I  ++S   +         +G V+  +P S   +I++F+   LQ 
Sbjct: 181 KGLTIIDRTTEGLNQIVVSESAQWNASDNVWDFYNGTVYLVAPDSSYRNILRFEHQQLQL 240

Query: 231 ESANSS--TIVLKANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
                +       + + N+   L            + +   +    ++ +     V+FGL
Sbjct: 241 PRTPLNLVERRRDSGEMNIRESLEQLEIQRIGGDRKEIRKLQVRIQQKFSLPFVCVVFGL 300

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +        +  ++  +     +S+ + F  +  F +I   + Q     P +  +L
Sbjct: 301 VGSA---MGSRPQRSGRGTSFGVSVIVIFTYYLIF-FISGAMGQAGVLSPFMGAWL 352


>gi|239993538|ref|ZP_04714062.1| permease YjgP/YjgQ [Alteromonas macleodii ATCC 27126]
          Length = 366

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 124/364 (34%), Gaps = 22/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+L+   +S L     ++ I   ++ ++ +   S       ++L   G   P +  
Sbjct: 2   LIFRYLLKETLKSQLAIFFILMAIFVTLRFVRVLGDASDGDIPAGLVLGFLGLYAPILSS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        +  ++E+ ++   G S   + + +LFL++L+ I          
Sbjct: 62  LVLPISAYLGIMLAHGRLYVDSEMTVMRACGISEWYVTRVMLFLSVLIMIVTGAITLYFA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQGIFIVDS 178
           P       QL  KA+     S L    F +  ++        +   +    +        
Sbjct: 122 PLAAENEYQLREKARNEAGISALMPGRFQQTGNEKAVIFVHDVDNNDKLQRVFLSQNQTD 181

Query: 179 RDTQTHKIYYAQSGSIDLDRQAI---ILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                 ++ YAQ+G +  +       +L +G  +      K    ++F  Y +Q     +
Sbjct: 182 DSEGDVRVVYAQTGEVANNPDGTRNLVLKEGVQYEGKQSEKAFRKVEFDEYQIQIADKPA 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                K +    + L   +              R+E   R+   L      LI++     
Sbjct: 242 DETRRKVSVLPTNELWEDDSIEA----------RAELQWRIAIPLSIPFLVLIAVPL--- 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLM 353
            A+  ++ +   +F ++ +  G F         +   + P  + + ++    +    +L+
Sbjct: 289 SAVDPRQGRFGKMFPAILLYLGYFLLLLASRRVLEDGKMPPQLGLWWVHTIMLIIGVMLI 348

Query: 354 IKKK 357
           ++ +
Sbjct: 349 VRDR 352


>gi|157374154|ref|YP_001472754.1| permease YjgP/YjgQ family protein [Shewanella sediminis HAW-EB3]
 gi|157316528|gb|ABV35626.1| permease YjgP/YjgQ family protein [Shewanella sediminis HAW-EB3]
          Length = 370

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 133/365 (36%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R + ++ +     ++ I      ++ +   S      ++++ + G  +P +  
Sbjct: 2   IVFRYLIREVFKAQIAVLFVLLAIFISQHFVRVLANASDGEFPASLVMTLLGLNLPYLAV 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M   +E++++   G S   + +  L LA++  +F       + 
Sbjct: 62  LVLPLSLFLGILLAHGRMYAESEMVVLHGVGVSEWYITRVTLLLAVINMLFTGYLSVFVT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-----VD 177
           P       Q+   AQ     + + +  F    +   +   +    +              
Sbjct: 122 PWAEEKQNQVLESAQSEAGLAAITQGRFQTSPNGRAVLFVERIDRDNQLDKVFVAQLPDP 181

Query: 178 SRDTQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             ++    I  A+ GS+  D    Q + LNDG  ++ +P   D  +++F  Y +Q +   
Sbjct: 182 EDESGQSNIVMAKGGSVVEDGSGGQRLQLNDGVQYQGTPKKVDFQVVEFGGYQMQIKEQE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +   +  L+  +               +EFH RL   L   +  LI++  A 
Sbjct: 242 VDERRRKLSALPIKDLMALD----------GPEATAEFHWRLAIPLAIPLMTLIAVPMA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLL 352
              +  ++ K   +F ++ +  G F         +E    P Y+ + ++    +    LL
Sbjct: 291 --RVNVRQGKFAKMFPAILLYLGYFGLMIAGRKALEDGVVPAYLGMWWIHASALFLGILL 348

Query: 353 MIKKK 357
           + K++
Sbjct: 349 LGKER 353


>gi|306842048|ref|ZP_07474721.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
 gi|306287889|gb|EFM59309.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
          Length = 371

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 102/332 (30%), Positives = 191/332 (57%), Gaps = 8/332 (2%)

Query: 32  ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           +LQRIN +++S ++   +++ S  LIP+ +P+V PF   +  T  L++MN+++EL++I+ 
Sbjct: 1   MLQRINFLTTSGQTFQTIVQFSSLLIPSAIPLVMPFALIIAITQTLSTMNQDSELVVINA 60

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
           +G  R  +++P+L LA  +S+  F+  N +EP  R  ++ + A A   L    ++E  F 
Sbjct: 61  SGAPRSAVMRPILILAATVSVTSFLIANYVEPYARINMRAMIANASADLMHVIIQEGTFR 120

Query: 152 RLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI--DLDRQAIILNDGEVH 209
           +L D+LYI++++   + ++ G+FI DSRD     IYYA  G+I        +++ +GEV 
Sbjct: 121 KLADNLYIQVAERRADGSIGGLFIADSRDPTLDLIYYAADGAIASTPSGDMLLMENGEVQ 180

Query: 210 RKSPISKDISIMKFKSYTLQTESANS--STIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
           R++     +SI+KF SY        S     V+ A D+ L++LLNP+PN+P  +   L  
Sbjct: 181 RRNVSDGTVSIIKFDSYAFDLNQFASAGDDFVIFAKDRPLTYLLNPDPNDPMLQTRPLT- 239

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
           YR+E H+R TQW++P+IF +I++  A       +  ++   F ++S +  V+W   +   
Sbjct: 240 YRAELHRRFTQWIYPLIFAMIALAIAGDSR-SHREARVSASFSAISTALLVYWAGYFASD 298

Query: 328 KIEQNPYYIPILYLFLFCISSI--FLLMIKKK 357
           + +++  YI ++YL    +  +  F+L+  ++
Sbjct: 299 RADKDSSYILVMYLVPLVVFLVTGFILLTGRR 330


>gi|254424599|ref|ZP_05038317.1| putative permease, YjgP/YjgQ family [Synechococcus sp. PCC 7335]
 gi|196192088|gb|EDX87052.1| putative permease, YjgP/YjgQ family [Synechococcus sp. PCC 7335]
          Length = 397

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 122/363 (33%), Gaps = 21/363 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTV 60
              + YI + +   FL        IA  I  + + I  V+ +  S  +  +I    +PT 
Sbjct: 24  TIMDRYIAKELTLPFLFGVGAFSSIAVSIGALFELIRKVADAGLSATLAFEIFLLSLPTF 83

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +  P    + T    +  + ++EL+ +   G S   ++ P + L++L++   F    I
Sbjct: 84  TVLAFPMSTLLATMMTYSRFSSDSELIAMRGCGVSINRIVAPAVILSLLVTGLSFSVNEI 143

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD-------------DDLYIKISKYNPN 167
           I P        L A+A       + E N+ F+                            
Sbjct: 144 IAPASTERAALLLARALDDEKPPFREGNIVFQQQEPAADGSGDELVRFFYARNFDGTTMR 203

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
           +     F  +  +    +I  A + + D  R      +G ++  SP      I++F    
Sbjct: 204 DITVVDFSQEDSEDGLKQIVSADAATWDFTRNLWEFTNGTIYAVSPTGSFRQIIRFDKQD 263

Query: 228 LQT--ESANSSTIVLKANDQNLSFLLNP-NPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
           LQ      + +    K  + N++               + +        ++       V+
Sbjct: 264 LQLPRTPLDLANRTKKQEEMNIAETKEYLTILQQTGDEKAVRKLAVAIQRKYAIPFACVV 323

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           FGL+      +     +  K     IS+ I FG ++  S+I   + ++    P L  ++ 
Sbjct: 324 FGLVGAAVGVRPQ---RTGKATSFGISVVIIFG-YYLLSFITSAMGESGVITPFLAGWVP 379

Query: 345 CIS 347
              
Sbjct: 380 LFI 382


>gi|119899192|ref|YP_934405.1| integral membrane protein [Azoarcus sp. BH72]
 gi|119671605|emb|CAL95518.1| probable integral membrane protein [Azoarcus sp. BH72]
          Length = 358

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/360 (10%), Positives = 119/360 (33%), Gaps = 8/360 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    Y+ + I  +     +  + +      +  ++ V      L   +     ++P  +
Sbjct: 3   KILSRYLAKEIFGATATVLVAFLGLFAFFDFINELDSVGKDGYQLYQAVIYVAMIVPGRV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    + +   LT++ R++E+ ++  +G S   +++ +  +  +  +  F+    I
Sbjct: 63  YELLPIAVLIGSLYALTTLARHSEITVMRASGLSTWRMLRILGLIGSVFVVLTFVFGEYI 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   S  +Q    A  +     L   L+ +    +   +    P+ +++ + I    + 
Sbjct: 123 APPAESAAQQWRLVATNSAVSQQLRSGLWVKDGAQVIN-VRTLRPDRSMEHVRIYAFNEH 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              +     +  +        LN  +  R +     +       +  +      S +++ 
Sbjct: 182 YGLESISEAATGVYDGEGQWRLNGIQRTRFTDERTVLEHEDSIIWRSELTPEVLSVLMVV 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               +++ L      +     +  + Y     K+L      ++   +++  A      R 
Sbjct: 242 PERMSVANL-WAYVRHLRENRQNADRYEIALWKKLVYPFAVLVMLALALPFAFT--HDRM 298

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLLMIKKK 357
                 +F+ + +  G         +    N +   +  L         +++ L  ++++
Sbjct: 299 GGVSVKVFLGVMLGIGFHLLNGLASNLGVINAWPPVLAALTPSLVFLATAAVMLYSVERR 358


>gi|258591111|emb|CBE67406.1| putative Permease YjgP/YjgQ family protein [NC10 bacterium 'Dutch
           sediment']
          Length = 426

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/363 (13%), Positives = 124/363 (34%), Gaps = 13/363 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + ++LR +  SF +      F+  + Q+++ ++L+ +    + ++L++  Y++P    
Sbjct: 32  LIDRHLLREMAASFALGLGTFTFVLLMDQMMRLMDLIINKGAPVGVVLRLISYILPFSFT 91

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +        ++   E +++  +G S   L+ P +   ++ +        +++
Sbjct: 92  VTIPMSVLLAVLATYGRVSSEGEAIVLKTSGLSLYRLMAPGVLFGVVATFATLWISTLVQ 151

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS--KYNPNNTLQGIFIVDSRD 180
           P      K L+ +       + LE  +F      L I +   +         + I     
Sbjct: 152 PSSTKAFKTLTHQLYHTHVLTALENGIFNTEYPGLAIYVDRSEKTDGTLHGILVIDQRNQ 211

Query: 181 TQTHKIYYAQSGSIDLDRQAI-----ILNDGEVHRKSPIS-KDISIMKFKSYTLQT---- 230
                I   +   ++ D +        L+ G +   S         + F++Y LQ     
Sbjct: 212 ADQRLIIAQEGKLLNKDDETEAPIGLQLSRGTLQISSRDHPDRYRNLDFETYDLQILTGG 271

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
             A +   V ++ + N+  L        N         + E HK+ +  +  +I  +I  
Sbjct: 272 TVAETVARVRQSKEMNIGEL-RTEIARLNKDGGKAWPLQVELHKKFSLPIACLILSMIGA 330

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             A +     +   +          + +      +  +   +P            + +I 
Sbjct: 331 PLAMRIKKAGRGVSLALSVAFAVFYYILLATGESLGSRGRIDPALGVWFPNLTLGMIAIG 390

Query: 351 LLM 353
           L++
Sbjct: 391 LVL 393


>gi|284049007|ref|YP_003399346.1| permease YjgP/YjgQ family protein [Acidaminococcus fermentans DSM
           20731]
 gi|283953228|gb|ADB48031.1| permease YjgP/YjgQ family protein [Acidaminococcus fermentans DSM
           20731]
          Length = 363

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 119/364 (32%), Gaps = 11/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M   + YIL+ + + FL        I      + +    ++    S + L+++   L+P 
Sbjct: 1   MSILDKYILKQMMQPFLFGVAAFSTIFVASSFLFRVTQYITQYGASYSSLIRLFLCLMPE 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+    P    +     +  ++ N+E+  + + G S   +  P+L    ++S+F  +   
Sbjct: 61  VINYTFPMSMLLAALLTMGQLSSNSEITAMRSGGLSFRRIAAPILAAGFVVSLFSVVWAE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL---DDDLYIKISKYNPNNTLQGIFIV 176
            + P  +S  +++        T    + ++  +       + +  ++           I 
Sbjct: 121 KVVPPAKSEYERIIKVEIKRDTKPRTQNHVLIKQVSKGQLVRLTYARTFDEKQGMMKDIT 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANS 235
                        ++      +   I+  G +   +        M F    L    +  +
Sbjct: 181 IEDWDNGKVARIQRTPQAKWTQGTWIMEGGTITDLTGKDGVARTMTFDKQVLPISETPKA 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            T+  K  DQ     L    +    +      Y  E ++R T  L    F LI +     
Sbjct: 241 ITLDQKDPDQMTIGELKMYIDILKRQYMPTSKYEMEIYRRFTVPLASFFFALIGVPLGV- 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLM 353
               ++      +  S+ I F  +   +++   + Q     P+L          +    M
Sbjct: 300 --QSQRTGASMGLGFSVVIIFIYYSIMTFMTG-LGQGGVIPPLLAAATPNLLCGAFGCWM 356

Query: 354 IKKK 357
           I KK
Sbjct: 357 IYKK 360


>gi|255658902|ref|ZP_05404311.1| permease, YjgP/YjgQ family [Mitsuokella multacida DSM 20544]
 gi|260848851|gb|EEX68858.1| permease, YjgP/YjgQ family [Mitsuokella multacida DSM 20544]
          Length = 364

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/366 (11%), Positives = 129/366 (35%), Gaps = 12/366 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +  + YI R + ++F+        +      + +    ++    SL+ ++K+  + +P+V
Sbjct: 4   RILDKYIFREVFKAFIFGICAFSAVFIGSGTLFKIAKYITDYGASLSAVIKVFVFGLPSV 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + T      ++ ++E+  + + G     +  P + +  L+SI        
Sbjct: 64  IMWTFPMSMLLATLLTFGRLSSSSEITAMKSCGIGFYRIAAPAVIMGFLVSIGAIAFNEY 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD----DLYIKISKYNPNNTLQGIFIV 176
           + P   +  + +             +E++  +          +   +Y+ +        +
Sbjct: 124 VVPWANTAYRNVVYYEIQGNNGMKSQEHIILKDIQDGKIQRLVYARRYDGDTQTLQGVTM 183

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANS 235
              +      +   +   +      I+++G ++  S    + S+ +F +  L  + +   
Sbjct: 184 QDFNQDGKVSHVENAEYAEYSMDKWIMHNGMLYDISEGQSEHSM-RFDTQVLPIKANPKQ 242

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                K  ++     L    N    +        +E ++R+T  +  +IF LI +    +
Sbjct: 243 IVREQKDPEELTMKELRAQINIMKTQYVDTNKLEAELYQRITVPMASLIFALIGVPLGLQ 302

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMI 354
                        F    I    ++    + + + ++    PI+ +++   +  I   ++
Sbjct: 303 PTRNSSSAG----FAMSVIIIFFYYALMTMGNALARSGAVAPIIAVWIPNIVGLIAGFIL 358

Query: 355 KKKYTK 360
            ++ ++
Sbjct: 359 IRRASR 364


>gi|310778171|ref|YP_003966504.1| permease YjgP/YjgQ family protein [Ilyobacter polytropus DSM 2926]
 gi|309747494|gb|ADO82156.1| permease YjgP/YjgQ family protein [Ilyobacter polytropus DSM 2926]
          Length = 357

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 140/357 (39%), Gaps = 2/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL+ +    +       FI  +  ++Q +  +     SL  +++I  + +P +
Sbjct: 1   MKIIHRYILKEMRMPIIFGISLFTFIFLIDIMVQMMENIIVKGVSLLDVVRILSFYLPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +      + +   +E   +++ G S  ++IKP   LA+ ++ F+F  +  
Sbjct: 61  LSQTIPMGFFLGVMITYSKLTSTSESTAMNSMGMSLNSIIKPTFMLALGITAFVFFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     ++QL+ K         L+EN++    DD  I I K   + + + I I     
Sbjct: 121 IIPNSFVKLQQLTLKIAYEKPAFQLKENMYIDEVDDYSIYIDKVGGDGSAENILIFKKEK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             +         ++  D  A+IL D E +  +P   +    +F    +   S     + +
Sbjct: 181 DNSFPTVLTAKKAMWKD-AAMILEDAEFYNLNPDGSEKLRGEFSRQKIPINSF-FENVKM 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K ++     +      + +   E    Y  E +K+L   L  ++ G++ ++ +       
Sbjct: 239 KVSEIETMSVRQLLKESKDKDDEEKLPYIVEMNKKLAIPLSAIMLGILGVLFSVGHHRSG 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +          + +          + ++ + +P+       F+    +I++ ++KK+
Sbjct: 299 KGVSYGISLGVIFLYIASLNVGVVMANRGKISPFIGIWTPNFVLLGLTIYMYLLKKR 355


>gi|255264665|ref|ZP_05344007.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
 gi|255107000|gb|EET49674.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
          Length = 380

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 134/357 (37%), Gaps = 5/357 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+L  +   F    L ++ + WV + +   + + +  +S  + L+ +   +P V+ 
Sbjct: 9   RLDRYMLSQLMMLFGFFSLVLIMVYWVNRAVILFDQLIADGQSAGVFLEFTALSLPNVIR 68

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P      +  V   ++ ++EL ++  TG S + L +PV+   +L++  + +  +++ 
Sbjct: 69  LVLPLSAFAASVYVTNRLSTDSELTVMQATGHSAVRLARPVIVFGLLVTALMMVLTHVLV 128

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   S +    A+    +T   L E  F      +   + + + +  L  IF+ D+R+ +
Sbjct: 129 PTSLSRLNDREAEIAENVTARLLTEGTFLNPASGITFYVREISASGELLDIFLTDTRNPK 188

Query: 183 THKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               Y A+   +    D   +++ +G     +  ++ ++   F   T        S    
Sbjct: 189 RQITYTAEQSFLVRSDDGPQLVMINGLTQTLTLETQRLTTTTFADSTFDIGGLIDSGSRG 248

Query: 241 K--ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           +    +     LL P     +       T   E H R  Q L  V+  L+          
Sbjct: 249 RVNIREVATMDLLYPTQEIRDLTRRDDATLIHEGHGRFLQALLAVVAALVGFSTLLIGGF 308

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            R       I I++ +   +    S  +  I    +  PI+Y  +     I    + 
Sbjct: 309 SRFG-ISKQIVIAIFLLIAIKTVESVAVGAIRGQAHLWPIIYTPIAVGLVISAAQLY 364


>gi|302342717|ref|YP_003807246.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
 gi|301639330|gb|ADK84652.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
          Length = 359

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/362 (12%), Positives = 124/362 (34%), Gaps = 8/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+   LY+     + F    +  V +  +   +++++    +    + +L      +P +
Sbjct: 1   MRILGLYVAGEFLKVFGFLLVAFVSLFTLFDFIEKVDNFHEALVPASTMLMYFLLQVPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +++P    + T   L  M++  E + I ++G S +    P++ LA+ +++   +   +
Sbjct: 61  ISLLSPLAVLLGTIIALGLMSKRGETIAIKSSGVSVMRFTLPIVLLALTITLSTALINEM 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P  ++    +          S      F+   +     I  ++P   +    +    D
Sbjct: 121 ALPGTKARTNHIWNVMVEKRPSSAYSHEKFWFKGNGSIYHIGLFDPLGQVLSNVVYYRFD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-TIV 239
              +      +          +   G   ++ P     S + F              + +
Sbjct: 181 DHFNLAERIDARRATYIGGKWLFFLGLHQQRLPQGG-YSAVVFDELEKNLPERPEDFSRL 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            K +++     L+ +    +        Y+ + H +++     VI  LI I  A      
Sbjct: 240 SKPSEEMGLAELSDHVGKVDAEGYDTRRYQVDMHCKISYPFICVIMALIGIPLALF--RE 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLLMIK 355
           R R     I + + ++   +  F Y            P++  +L    F ++ + ++   
Sbjct: 298 RGRALAPGIVVGMLVALVYWISFGYARSIFGYGGVLPPMMAAWLPNAMFALAGVGMITSV 357

Query: 356 KK 357
           ++
Sbjct: 358 RQ 359


>gi|158521443|ref|YP_001529313.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
 gi|158510269|gb|ABW67236.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
          Length = 359

 Score =  127 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 122/363 (33%), Gaps = 10/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+  I ++  +    ++ I   +   ++I+    +   L+ +     + IP +
Sbjct: 1   MTILSRYIIAEILKALAVVMAVVIVIYVAVDFFEKIDDFLGAGVPLSRMAVFFLFKIPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +  V   MNR  E+  + ++G    +L KP   + +   + L I   I
Sbjct: 61  VVQTAPVGVLIASLVVFGLMNRRNEVTALKSSGIGPASLFKPAAVVGVGCCVLLLIVSEI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+  S    +  +     T S  ++N  +  DD   + I  Y P        ++   D
Sbjct: 121 VVPRTISRANYIWLQQVRQKTSSVDQKNNIWLKDDRTIVHIRHYQPREKKAFDVVLHDLD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--ISIMKFKSYTLQTESANSSTI 238
                     +     D     L +    +         +   +     L     +    
Sbjct: 181 EGFRVTRRIDAARGLYDGGQWTLRNVLDQQFDVAGNVQLVEFRERLKIELDLLPEDLDRA 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A++     LL+        +   + ++R + H +L+     ++ GLI          
Sbjct: 241 AESADEMGFVQLLDR-IRQVERQGYSVVSHRVDLHAKLSFPFVCLLMGLIGAALGIMGRT 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMI 354
             +          +  SF V+W F      +       P++  +    +F  ++  ++++
Sbjct: 300 --RGGITANAAYGVGASF-VYWIFHSFCISLGYGGMLPPLIAAWSANLVFGGATAAVILV 356

Query: 355 KKK 357
            ++
Sbjct: 357 ARR 359


>gi|298529508|ref|ZP_07016911.1| permease YjgP/YjgQ family protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510944|gb|EFI34847.1| permease YjgP/YjgQ family protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 390

 Score =  127 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 131/364 (35%), Gaps = 8/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK     I++ +G  FL++   ++ +  + +++   ++    +  +  ++K   YL P+ 
Sbjct: 1   MKILHRQIIKEVGTIFLVTLASMLSLIVIGRMIDLKDIFVGQSIQILYVIKSFFYLGPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L MV P    +        M+ + EL  +  +G S  +L+   L  ++    F       
Sbjct: 61  LSMVIPIACMLSIFLCFLRMSSDRELTALQTSGISIRSLVLSPLLFSLGAMGFTLYVTLH 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           +        ++ + +     T   ++  +F R+  D+ I +   +P  + L+ +FI D  
Sbjct: 121 LTSWGIDNFRETAVEMVREQTEVSMQPGVFHRMIPDMAIYVHNRDPGTSELKEVFISDDT 180

Query: 180 DTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTESA-- 233
             +      A +G +  D++      IL+DG ++R+      +         L   S   
Sbjct: 181 VPEAPLTIVAPTGRMLSDKEEGMLYFILDDGRIYRQDQEEHSLVSFGEYRLRLDLFSLLG 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           ++     +  + +   L     ++             E HKR +  L  +I GL ++   
Sbjct: 241 DAGLRDKRPEEMSWGEL-QAYKDDAQADSRQYRLAVLEEHKRFSLPLACLILGLFAVPLG 299

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                + +   +        I + +F     +      NP     +    F + ++    
Sbjct: 300 LTLQGLGRNWGLLLAMSCFLIYYSLFTAVYGLGEAGTLNPDLAMWMPNIFFLVLTLGGFY 359

Query: 354 IKKK 357
              +
Sbjct: 360 FYSQ 363


>gi|83945296|ref|ZP_00957645.1| hypothetical protein OA2633_00975 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851466|gb|EAP89322.1| hypothetical protein OA2633_00975 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 375

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 142/348 (40%), Gaps = 8/348 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y  R     FL +   +  +A + Q L  ++L++   E+  +L+ I+   +P V
Sbjct: 1   MTLFQRYTFRQALWPFLGAMAALTGLAVLTQSLSNLDLMAERGETALVLITITVLAMPQV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L  +  ++EL +    G SR   + P L LAI + +   +    
Sbjct: 61  IALLLPIAVFLAVAIALNRLTSDSELTVAAAAGMSRFQRVSPFLRLAIYVVLVNLVINLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P     ++Q   + +  L  S++ E  F  L D +   + + + ++ L  +FI+D R 
Sbjct: 121 VQPASFRLMRQQLFEIRTDLAASFMREGEFVPLGDQVTFYVREISDDSVLNDVFIMDDRT 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFK--SYTLQTESANSS 236
                 Y A+ G I        ++L DG   +    S  ++ + F      L     N++
Sbjct: 181 -GQSAAYAARRGRIAATDRGPVMLLEDGVRTQVD-QSGVLTNLSFDSTKVELTLFVDNTA 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           ++  K +D+ L  LL P P +            +E H RL+  L+ + F L   +AA   
Sbjct: 239 SLFFKESDKYLPELLRPTPADIARAG-GKGRLYAEGHYRLSAPLYNLAFAL-IALAAYMS 296

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
              R+      + I+ + +  +      I    E +     + YL   
Sbjct: 297 GEHRRIGYGRNLIIAGASAVVLRLTGFAIQAAAESDDAMNAVQYLVPL 344


>gi|332142604|ref|YP_004428342.1| lipopolysaccharide ABC transporter permease [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327552626|gb|AEA99344.1| lipopolysaccharide ABC transporter permease [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 353

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 126/354 (35%), Gaps = 3/354 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R +  +  ++   ++ ++ +I+ ++++  +      +          +P  L
Sbjct: 3   KILDLYIARTLLSTITVTLSVLIGLSALIKFVEQLRKIGEGDYDMLAAFIYVLLSLPRDL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     +  +  N+EL+++   G SR  +I   +   +++ + +      +
Sbjct: 63  EQFFPMATLLGGLIGMGVLASNSELVVMQAAGMSRWNIINSAMKSTLVMILAVMAVGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   +  KQL  +A    +     + L +  D D ++ I +    ++L+ + I +    
Sbjct: 123 TPFSETKAKQLRTEAISGGSLFS-SDKLVWAKDGDRFVSIGQVISQDSLKDVSIFNFNSD 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
            + +       S   D     L++ EV + +     +       +           + +K
Sbjct: 182 LSLQSITYAKNS-TYDGDGWWLSNVEVTQFTETQVSVDDTDRMRWNSTLTPDKLGIVAVK 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               +++ LL+   N  +   +    Y     +++ Q +   +  L+++           
Sbjct: 241 PEALSITGLLD-YVNYLDNNDQDPSRYELALWRKIFQPISVGVMLLMALSFIFGPLRSVT 299

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                 + +     F +       +  + Q P ++  L   L   +   +++ +
Sbjct: 300 MGARVIMGVLTGFGFFILNEVFGPVSLVYQLPPFLGALLPSLLFAAVAGVMLRR 353


>gi|194337384|ref|YP_002019178.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309861|gb|ACF44561.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 359

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 117/354 (33%), Gaps = 2/354 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL    ++FL + +    +  +I ++++++        L  ++      IP++
Sbjct: 1   MKILNKYILGQFAKAFLFTSIAFACLFILINMVEKLDEFIDKKLGLWQIVHYYLLSIPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V+P    + +  V   ++ + EL  I + G S   L+ P +   +L+ +F  ++   
Sbjct: 61  LLVVSPVSALLSSILVAGKLSFSGELPAIRSAGVSMRQLLTPFITGGVLILLFNLLNAGW 120

Query: 121 IEP--KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           I P         +     +                 + +    +       +  + I + 
Sbjct: 121 ISPSTFAEKNHFEQRYLKRNPAQPQENRNIHILEPGNRMLSIGTLDPDQAEISAVSIEEF 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              +      A S   +      IL +      +   +   +    S  L     + S +
Sbjct: 181 SGARLKSRTDADSMRYNQKTGEWILLNAAKRSFTGKDETFHLTPVTSVKLALSPRSLSEL 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L+ ++ NL                 LE    +FH ++      +I  LI +  + K+  
Sbjct: 241 NLQPDEMNLIRHYRYLTEKEGAGFAGLERSTVKFHNKIALPFASLIIILIGVPLSAKKKR 300

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                +I     +  +  GV    +   ++   NP     L   LF      + 
Sbjct: 301 GGLASEISITLFAGFLFMGVQKTIAIAGYQGMINPMLAAWLPNILFLGIGYAIY 354


>gi|227824355|ref|ZP_03989187.1| permease [Acidaminococcus sp. D21]
 gi|226904854|gb|EEH90772.1| permease [Acidaminococcus sp. D21]
          Length = 362

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 115/365 (31%), Gaps = 13/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+ + + F         I      + +    ++    S + L ++   L+P 
Sbjct: 1   MRILDKYILKQMLQPFAFGVAAFSTIFVASSFLFRVTQYITQYGASYSSLFRLFLCLMPE 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+    P    + +   +  ++ N+E+  + + G S   +  P+L    ++S+F  +   
Sbjct: 61  VINYTFPMSMLLASLLTMGQLSGNSEITAMRSGGMSFRRIAMPILAAGFVVSLFSVVWAE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEEN---LFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + P  ++  +++  +     T    +++             +  ++           I 
Sbjct: 121 KVVPPAKAEYERIIQQEIKNNTKPRTQDHILLKNISKGQLTRLTYARTFDEKAGVMKDIT 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                +   +   ++          I+  G +   +        M F    L       +
Sbjct: 181 IEDWDKGRVVRIQRTPEAKWQNGTWIMEKGTITEITNEEGLTRTMTFDKQVLPITETPKT 240

Query: 237 TI--VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                   ++  +  L          + +    Y  E + R T  L    F LI +    
Sbjct: 241 ITLDQKDPDEMTIGEL-KMYIGILERQYQPTSKYVMEIYSRFTVPLASFFFALIGVPLGV 299

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLL 352
                ++      +  S+ I F  +   +++   + Q     P +   +  F        
Sbjct: 300 ---QSQRAGTSMGLGFSVVIIFIYYSIMTFMTG-LGQGGVIPPFIAAAVPNFLCGCAGAY 355

Query: 353 MIKKK 357
           +I +K
Sbjct: 356 LIWQK 360


>gi|226940337|ref|YP_002795411.1| permease YjgP/YjgQ [Laribacter hongkongensis HLHK9]
 gi|226715264|gb|ACO74402.1| permease YjgP/YjgQ [Laribacter hongkongensis HLHK9]
          Length = 357

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/361 (12%), Positives = 121/361 (33%), Gaps = 5/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI   +  + +   L ++ +     +L  +  +     S + +L +    +P  
Sbjct: 1   MKILTRYIGGNVIAASIFGLLALLSLFAFFDVLSELTDIGRGGYSFSDVLVVVALKLPRH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    + T   ++ +  ++E  ++  +G S   + + +  +  L ++  F++   
Sbjct: 61  AFELMPLAVLIGTMVAMSLLAGSSEYAVMRTSGMSLGQVARILAGIGALFAVLTFVTGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P      ++   ++  A+         + + D+     + +  P+NTL GI I     
Sbjct: 121 AAPWAEQASERTKLQSTGAVISGDFRSGAWIKDDNHFIN-VREMLPDNTLLGINIYTYDK 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       +I     +  L D +  R          +  + +    +    ST+++
Sbjct: 180 NDRLTDVRYARRAIYQPDGSWQLEDIKETRIEANRTIARDLPSQRWESILQPELLSTLLV 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    +++ L      +     +    Y      +L   L  +   L+++         R
Sbjct: 240 EPERMSVADLGR-YIEHLATNRQNTLRYEIALWGKLFYPLACLTMALVALAF--TPVNQR 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL-FCISSIFLLMIKKKYT 359
           Q      IF+ + I    ++      H      +  P++ L       ++    + ++  
Sbjct: 297 QSNLGSRIFVGILIGLAFYFINRLFGHLGLLYGWSPPLVTLLPTLIFLAVGTWFLVRQER 356

Query: 360 K 360
           +
Sbjct: 357 R 357


>gi|37520500|ref|NP_923877.1| hypothetical protein gvip124 [Gloeobacter violaceus PCC 7421]
 gi|35211494|dbj|BAC88872.1| ycf84 [Gloeobacter violaceus PCC 7421]
          Length = 387

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 44/375 (11%), Positives = 124/375 (33%), Gaps = 25/375 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + Y+   +   FL        I   +  + + + L+S +   L   L++    +P 
Sbjct: 16  LTIMDRYLASELVLPFLFGVAAFASIGMAIGSLFELVRLISENGLPLTTALQVFLLRMPQ 75

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++    P      T      ++ + E+  +  +G S + ++ P L L++++S+  F    
Sbjct: 76  IITYTFPMSVLFATLLAYGRLSGDLEITALQASGVSILRVVVPTLLLSVIVSVITFFFNE 135

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-------------IKISKYNP 166
           ++ P          A+A          ++     + +               +  ++   
Sbjct: 136 VVVPTANQEASTTLARAIGGGDRPRFTKDNILYPEYNWVPGKAGEREYALIRLFYARRYS 195

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
           +  + G+ I+D      +++  A S   D    A    +G  +         +I++F+  
Sbjct: 196 DGIMYGLTILDYSQENLNQVITADSAYFDPKTDAWRFRNGTSYLIGNDGTYRNILQFQEQ 255

Query: 227 TLQTESANSS--TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
            ++           V +  +     L            + +       +++         
Sbjct: 256 QVKISEDPLKFAQEVRRPEEMTTVEL-RRYIELAQNARQEIRGLLVSLYQKYAIPSVCFA 314

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISL-SISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           F L+           R+++  + + + L  +    ++ F +I   + Q     P L  +L
Sbjct: 315 FALVGAPLGL-----RRQRTSNALGLGLSILIIFSYYIFLFIAQALGQTGVLPPWLGAWL 369

Query: 344 FCIS--SIFLLMIKK 356
             +   ++   ++ +
Sbjct: 370 PALITMAVGAYLLWR 384


>gi|262274978|ref|ZP_06052789.1| putative membrane protein [Grimontia hollisae CIP 101886]
 gi|262221541|gb|EEY72855.1| putative membrane protein [Grimontia hollisae CIP 101886]
          Length = 357

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 122/357 (34%), Gaps = 2/357 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +    +V ++ +I+ ++++  V   + ++   ++     +P  +
Sbjct: 3   KILDLYIGRTIIATTSLCLATLVGLSAIIKFVEQLRSVGEGSFTMMTAVQYVLLSMPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  EMFFPMAVLLGALIGLGTLASSSELVVMQAAGFSKLDIGLSVLKTAMPLMLVVLALGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +   ++L A A+       +   ++ +   D           + +           
Sbjct: 123 APDAQKAARELRAFAKSGGNVMSVRRGVWAKDGSDFIYIARTDQQESLVGVNIWKFDDTQ 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                 +A+          ++ N    H   P+  + +  K  ++         S + +K
Sbjct: 183 TLKAQVFAEQARYLDKDSWMLENVTVTHFDGPVKINETTEKQLAWKTTLTPEKLSIVTVK 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS + +   +      +    Y     +++ Q L   +  L+++           
Sbjct: 243 PEELSLSGVYS-YVDYLKASEQDASRYELALWRKVLQPLSIGVMMLLALSFVFGPLRSVT 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                   +    +F +       +  +   P ++  +         + L ++ +K 
Sbjct: 302 MGARVLSGVIFGFAFYISNEVFGPMTLVYNLPPFVGAIA-PSLAFIGVTLYLLNRKL 357


>gi|196228189|ref|ZP_03127056.1| permease YjgP/YjgQ family protein [Chthoniobacter flavus Ellin428]
 gi|196227592|gb|EDY22095.1| permease YjgP/YjgQ family protein [Chthoniobacter flavus Ellin428]
          Length = 380

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 60/368 (16%), Positives = 115/368 (31%), Gaps = 12/368 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+LR     FLM     + I  +I +    N    +      +L+     +PTV
Sbjct: 1   MNILDRYVLRSFIEPFLMCLAGFIAIWLIIDVSDNFNDFIEAHARFRTILEYYVTQLPTV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     L+ M+R  EL+     G S + ++ P++ + +L++ F F     
Sbjct: 61  ILMSLPVGLMLGLLFSLSRMSRTNELISQLTAGRSVVRVLAPLIGVGVLMTGFCFWLNWE 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEE---NLFFRLDDDLYIKISKYNPNN----TLQGI 173
             P   S  K    K +     + +E    +LF    DD    + K              
Sbjct: 121 HAPHAESIKKDAMQKIKRGKRATDVEPVLAHLFRDRRDDRTWYVRKLIFQPGEERMQGVH 180

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS-----YTL 228
                      K +YA S   D  +Q   L  G++    P         F          
Sbjct: 181 VTQQDETGHILKKWYASSVYYDPAKQEWKLEKGKIVTFKPDGDVEDQDLFLRGFRIIKDW 240

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                  ++  L     ++  L      N ++    L  YR+    R       ++   +
Sbjct: 241 PETPWRVASTELNPGGLSVHELHEYLKYNSDFPAVQLAPYRANLADRYALPFQCLLAVFL 300

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           +               +    + L +       F  +   +  +P + P + +    I  
Sbjct: 301 AAPLGIVYNRRGVIGGVTAAMVLLVLMIMSHSFFVMLGKGMRMDPNFSPWVPVIGLGIIG 360

Query: 349 IFLLMIKK 356
           + L+  + 
Sbjct: 361 LVLMYYRS 368


>gi|90416560|ref|ZP_01224491.1| hypothetical protein GB2207_05142 [marine gamma proteobacterium
           HTCC2207]
 gi|90331759|gb|EAS46987.1| hypothetical protein GB2207_05142 [marine gamma proteobacterium
           HTCC2207]
          Length = 370

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/369 (13%), Positives = 118/369 (31%), Gaps = 24/369 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R I  +    C+ ++ +    + ++ +    +     N +  + GY IP+ L 
Sbjct: 2   IIFRYLCREILSATTAVCVILLLVLMSGRFVKYLGKAVAGDMDSNSIFAMIGYRIPSFLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P  F +        +    E+ ++   G S   L+   L +A + ++        + 
Sbjct: 62  LTLPLAFFLAVLLSFGRLYVQNEMSVLKACGVSERRLMGYTLIIASVFALATGWLSLSVS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR-LDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           P   +  + L    +       L    F+                +  L  IF+  +  +
Sbjct: 122 PSGMTKAEALFDAEKSRSELDKLMPKKFYSLSGGKGVTYAEAVTEDRELDEIFLAMTAGS 181

Query: 182 QTHKI-----YYAQSGSIDL----DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
             +         A  G          + +++  G      P   D  I +F+ Y  + E 
Sbjct: 182 DENSDRRLILVLADKGRQQQAENSSERYLVMESGYRIEGVPGQNDYQITRFEEYGSRLED 241

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +  S    K +      LL                 ++    RL+  L  ++  ++++  
Sbjct: 242 SAPSIRKTKTDAMATGLLL----------GSNDPELQATLQWRLSIPLMVLVVTILAVPL 291

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL-FCISSIFL 351
                   ++ +   +  ++++ F      + +   +E     I +  L +      I +
Sbjct: 292 ---SRTNNRQGRYGKLLPAIALYFTYLVALNAMRGALESGAIPISVTLLPVHAVYLGIAV 348

Query: 352 LMIKKKYTK 360
           L+++    K
Sbjct: 349 LLLRSGGPK 357


>gi|313894646|ref|ZP_07828209.1| permease, YjgP/YjgQ family [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313440836|gb|EFR59265.1| permease, YjgP/YjgQ family [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 363

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/368 (13%), Positives = 121/368 (32%), Gaps = 13/368 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        I      + +    ++     L +++K     +P+
Sbjct: 1   MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMKAFVLALPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + +    + ++  +E++++   G S + L  PV  +A+++SI       
Sbjct: 61  IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALMISIGAVAFNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENL----FFRLDDDLYIKISKYNPNNTLQGIFI 175
            + P+     + +  +  +       + ++        +    +    YN       +  
Sbjct: 121 FVVPRTNHMYQTIVREEIMKNATPQTQNHIVLKAMNGDELGTLMYAKSYNAETKQLSMIT 180

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SA 233
           V              + +   + Q  ++ +G ++  S        MKFK  +L  +    
Sbjct: 181 VQQFGEGGKLQQVENADTAIWNGQYWVMQNGIIYDVSAGDGVERTMKFKEQSLPIKSAPK 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +      K  +  +  L +                  E ++R T  L   +F L+     
Sbjct: 241 DIQQDQRKPEELTIKELRHQIKAYKAAYT-NANKLEMEMYQRFTIPLASFVFALVGAPLG 299

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLL 352
                 +QR      F    +   +++G       + +      +L   +   +  I  L
Sbjct: 300 L----QKQRSSSSIGFGISILIIFIYYGVMTFAGALGKGGALPTVLAALIPDTLGIIAGL 355

Query: 353 MIKKKYTK 360
            +  + +K
Sbjct: 356 YLNWRVSK 363


>gi|332535154|ref|ZP_08410963.1| hypothetical protein PH505_cf00160 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035424|gb|EGI71923.1| hypothetical protein PH505_cf00160 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 354

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 126/356 (35%), Gaps = 3/356 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+ R I ++   + L +V I+ +I+ + ++  V   +  L   +  + Y IP  
Sbjct: 1   MKTLDWYLGRSILQTTGFALLVLVGISTLIKFIDQLKSVGRGSYDLMTAMLYTLYTIPGD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +     L ++  N+EL+++   G SR+ +I  V+  AI +++ +      
Sbjct: 61  LVVFFPMAALIGGLTGLGALASNSELVVMQAAGMSRLQIIGSVMKTAIFMAVCMMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+ +    +      +     +  +   +  D   +I I   + N  L G+ +     
Sbjct: 121 GAPEAQL-HAKEMRNQAIHGGDVFNTQKGVWAKDGSNFINIEDVDENGRLNGVHMYHFDK 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           +           ++   ++  +L D      +        +  + Y  Q  +     + +
Sbjct: 180 SLELTQITKAKDALSR-KEGWLLRDVNKVIITSEKTTTEQLPEEFYPSQLTAEKLGVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    + + L            +   TY     ++L Q +   +  L+++          
Sbjct: 239 KPESLSFTGL-WSYLTYLEQNEQDTSTYELALWRKLMQPVSVAVMLLVALSFIFGPLRTV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  + +   I F +       +  + Q P  I  +   +  I     LM K+
Sbjct: 298 TMGARIIMGVVTGIVFHLTNEIFGPVVMVYQIPAIIGAVLPSIIFIGFATYLMNKR 353


>gi|320353217|ref|YP_004194556.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
           2032]
 gi|320121719|gb|ADW17265.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
           2032]
          Length = 508

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 132/365 (36%), Gaps = 13/365 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI   +   F  S L +  + ++++++  + +V +    L   +++  Y+ P +L 
Sbjct: 34  LLYSYIANELLAPFFASFLILYCVFFLVRLIPLLEVVLALRIGLADFIRLFSYIFPRMLL 93

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P           T +  + E+L +   G S   ++ PV+ +A  ++         + 
Sbjct: 94  YIIPMASMAGVIVGFTRLTNDREILALKACGVSLKQMLPPVILIAAAIATLTGFFSIRLI 153

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      KQL  +         L+   F     D+ + + + +      G+++ D R   
Sbjct: 154 PAGALGFKQLMFELAKEKIDKGLKAREFTEALGDIVVYVDEIDDQQRWHGVYVSDMRGRT 213

Query: 183 THKIYYAQSGSIDLDRQAI----ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              I  A+SG ++ + + +    +LNDG +H  +    D  +++F  Y LQ      + I
Sbjct: 214 QPLITVAKSGHMEAEMERMTVTIVLNDGTLH--NNEGTDNQVVRFGRYQLQISLRPPTQI 271

Query: 239 ------VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                        +   LL           +L   + SE+H RL   +   I  ++ +  
Sbjct: 272 GKEDVTSQTRGAMSQQQLLRAAAKQ-KPNSKLHRIFLSEYHHRLALPVGCFILSILGLPL 330

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
             + A  R+   I    +   + +  F     +  +          L   LF + ++ + 
Sbjct: 331 GLQAAPGRRAVGIPLGLVVFVLYYIAFTTARVMSEEGTLPLVLGMWLPNILFSVLTVVIF 390

Query: 353 MIKKK 357
               +
Sbjct: 391 WRVNR 395


>gi|225871810|ref|YP_002753264.1| permease, YjgP/YjgQ family [Acidobacterium capsulatum ATCC 51196]
 gi|225794430|gb|ACO34520.1| permease, YjgP/YjgQ family [Acidobacterium capsulatum ATCC 51196]
          Length = 772

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 121/359 (33%), Gaps = 8/359 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    YILR I    L+      F+ ++  +   + L   ++ S+  + +    ++P +
Sbjct: 1   MRILTRYILREILSHGLIGGALFTFVLFMPNLGDLLELAVRNSSSMGAVGEAFLLMLPNI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +V P    +     L+ +  ++E+  +  +G      +  V  +A        ++   
Sbjct: 61  FVVVIPMSVLVGILLGLSRLAADSEVTAMRASGIGVWRFVGIVSVIACAAWGLGLVNSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN---TLQGIFIVD 177
           + P        L      A     ++  +F+    +  + +              +FI +
Sbjct: 121 LAPWSSRQTIHLEQSLANAQASYEVQPRVFYEDFKNYVLYVEDVKAGRGAARWGKVFIAN 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAII---LNDGEVHRKSPIS-KDISIMKFKSYTLQTESA 233
             +     I  A+S ++       I   L+DG  H+ SP    D ++  F    +   + 
Sbjct: 181 LTNPDAPSITTAESATVINGPNQTILMRLHDGAQHQLSPTEPGDYNLSTFTETDVPLRTG 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +   +     D+ +  + N      ++  +    +  E  KRL      ++  L+ +   
Sbjct: 241 SQEDVRFHRTDKRILAMTNRELIERSH-GKGGTWFFIELQKRLAYPTACLVLMLVGVPLG 299

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                  +          + I + +    + +  + +  P     +   LF    IFLL
Sbjct: 300 MSSRRGGKSGGFVITIALVFIYYFLSSTGTALARQGKIPPLIGVWMANVLFAGCGIFLL 358



 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/366 (13%), Positives = 125/366 (34%), Gaps = 17/366 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y++R   R F+M  +  V +       + +  +  +  SL ++ +    L P+++ 
Sbjct: 408 LLDEYVIREFLRVFVMVLVSFVMLMLFFTFFELVGDIIRNHSSLLVVGEYLIDLTPSMIY 467

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++TP    +    V   MNR++E+  +  TG S   ++ P++ +A L+++ LF       
Sbjct: 468 LITPLAVLIAVLVVFGLMNRSSEITAMKATGISLYRIVLPIMVIASLMAVGLFFFNEYYV 527

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD---------DLYIKISKYNPNNTLQGI 173
           P+     + L  + +     +       +               Y              +
Sbjct: 528 PQANRKQQALRNEIKGLPAQTTSHPGEQWMFGKREPGHPGMIFYYQYFDPDTNTFLNLTV 587

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTES 232
           F  D +     K  +AQ  S D      IL DG      +   +        +     E+
Sbjct: 588 FEFDPQSFTLMKRTFAQMASWDQKDHRWILQDGWTRTFENHEIQSYQPFAVTTLPEMIET 647

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            +      + + +     L     + +         R +  ++L   L  ++  ++++  
Sbjct: 648 PHYFEKDFRQSTEMSFAQLRHYIADLSQSGFDTVRLRVQLDRKLADPLITLVMAVLAVPF 707

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCISSI 349
           A       +R  +  + +++ ++   +W  S     +         L  +   +    + 
Sbjct: 708 ALSMG---KRGSLAGVSVAIGVAIA-YWLISGTFEAMGDVSMLPAFLAAWSPDILFALAG 763

Query: 350 FLLMIK 355
             L+++
Sbjct: 764 TYLLLR 769


>gi|212636935|ref|YP_002313460.1| permease YjgP/YjgQ [Shewanella piezotolerans WP3]
 gi|212558419|gb|ACJ30873.1| Permease YjgP/YjgQ [Shewanella piezotolerans WP3]
          Length = 371

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 129/350 (36%), Gaps = 22/350 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  +P ++ 
Sbjct: 2   IVFRYLIREVLKAQIAVLLVLLAIFISQHFVRVLADASDGEFPASLVMTLLGLNMPFLIV 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M    E++I+   G S   + +  L LA++  IF       + 
Sbjct: 62  LVLPLSLFLGILLAHGRMYSENEMVILHGVGISEWYITRVTLLLAVVNMIFTGFLSIYVT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-----D 177
           P       Q+   AQ     + L +  F    +   +   +    +       V      
Sbjct: 122 PWAEERQNQVLEHAQSEAGIAALTQGRFQTSPNGRAVLFVERIGRDNKLDKVFVAQLPDP 181

Query: 178 SRDTQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             +T    +  A+SG +  D    Q + L DG  ++ SP   D  +++F  Y ++ +   
Sbjct: 182 DDETGLANVVVARSGKVVEDATGGQRLQLEDGVQYQGSPRRVDYQVVEFGGYQMEIKDQE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +     K +   +  L++ +               +EFH RL   L   +  LI++  A 
Sbjct: 242 AGERRRKLSALPIDQLMDID----------TPEATAEFHWRLAIPLAIPLMTLIAVPMA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
              +  ++ K   +F ++ +  G ++G      K  ++      L ++  
Sbjct: 291 --RVNNRQGKFAKMFPAILLYLG-YFGLMVAGRKSLEDGVIPEFLGMWWI 337


>gi|95928709|ref|ZP_01311455.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
 gi|95135054|gb|EAT16707.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
          Length = 395

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 76/366 (20%), Positives = 149/366 (40%), Gaps = 18/366 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YI R I   FL+S +   F+  + ++L+ I +V     +++ +L +   L+P+   
Sbjct: 5   RLQTYISREIIAPFLLSLVLFTFVLLLSRLLKLIEMVVDKGVAVSEILHLFACLLPSFFV 64

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P  F +        ++ ++E++ +   G S   L +PVL +A+L+  F      + E
Sbjct: 65  ITVPLSFLLAVMLAFGRLSADSEIVAMKAAGFSLYRLSQPVLIIALLVCGFTAYLTLVAE 124

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDT 181
           P  R  +KQ       +     L+  +F    D L +  +  +   NT+ G+FI D R  
Sbjct: 125 PAGRVKLKQRLIDIAYSKAAVALQPQIFNEEFDGLMMYANDVDNQTNTMTGVFISDERMG 184

Query: 182 QTHKIYYAQSGSIDLDRQA----IILNDGEVHR--KSPISKDISIMKFKSYTLQTE---- 231
            T  I  AQ G I  DR      + L DG +HR       +   ++ F+SY +       
Sbjct: 185 NTPSIIVAQRGEIRSDRTNGSLLMHLRDGSIHRPVIRSGKRSYQVVDFQSYDVNLSLNTA 244

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                ++ LK  +     L+  +P     +       R E  +RL     P+IF L+++ 
Sbjct: 245 DKEEKSLNLKPKEMTTKALMQADPELSEEKQRER---RVELMERLVLPFSPLIFALLAVP 301

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIF 350
              +     +        ++L I    +   S     +++N +  +  L+        + 
Sbjct: 302 LGIRSHRSPKGGGFS---VALFIFLLYYLCLSVAKTMVQENNWPLLGSLWGPSVAFIVVG 358

Query: 351 LLMIKK 356
           +L++ +
Sbjct: 359 ILLLIR 364


>gi|148261611|ref|YP_001235738.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
 gi|146403292|gb|ABQ31819.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
          Length = 386

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 138/352 (39%), Gaps = 7/352 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + Y+ R +     +S L +V + W+ Q L+ I L+     S  + L ++G L+P+ +
Sbjct: 20  TRLDRYVFRQLLIGLAVSTLGLVALVWLTQSLRFIQLIIQHGLSPVVFLHLTGLLVPSFV 79

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P    +    V   +  + EL ++  +G S   + +P L LA+L  +  +     +
Sbjct: 80  AVILPITCFIVILFVYARLAADRELTVMRASGMSDAAIARPALALAMLTMLACWGLNVWL 139

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   +      +  +  +    LE  +F  +   + + + + + +  L GI I D+R  
Sbjct: 140 VPSTLARFTHFESIIRNQVAAFLLEPGVFTPIPGHITVYVQRRDHDQVLHGIVIQDARQK 199

Query: 182 QTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                  A+SG +    D   ++L DG   +  P +  ++I+ F+   +        T  
Sbjct: 200 GEPATILARSGRLIDGPDGPEVLLLDGSREQVDPKTGRLNILSFRRNLISLAKPTGVTRK 259

Query: 240 --LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K ++  ++ L +    +     +      +     +      + + +I++++  +  
Sbjct: 260 LAPKTSEATMTQLFHAGAAHVPPPVQRRWREEAWRR--IASPFAVLSYAVIALLSVLRSP 317

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
             R++     +  ++ I  G+        +   +    IP+++      + +
Sbjct: 318 F-RRQGGAAALVAAVFIVMGLVALELGTENLAARQNGLIPLIFAVTLGPALV 368


>gi|170725439|ref|YP_001759465.1| permease YjgP/YjgQ family protein [Shewanella woodyi ATCC 51908]
 gi|169810786|gb|ACA85370.1| permease YjgP/YjgQ family protein [Shewanella woodyi ATCC 51908]
          Length = 370

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 127/351 (36%), Gaps = 23/351 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R + ++ +     ++ I      ++ +   S      ++++ + G  +P +  
Sbjct: 2   IVFRYLIREVLKAQIAVLFVLLAIFISQHFVRVLANASDGEFPASLVMTLLGLNLPYLAV 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P  F +        M   +E++I+ + G S   + +  L LA++  +   +    + 
Sbjct: 62  LVLPLSFFLGILMAHGRMYAESEMVILHSVGVSEWYITRVTLLLAVINMLITGVLAVYVT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-----VD 177
           P       Q+   AQ     + + +  F    +   +   +    +              
Sbjct: 122 PWAEERQNQVLEHAQSEAGLAAITQGRFQTSPNGRAVLFVERIGRDNELDKVFVAQLPDP 181

Query: 178 SRDTQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             +     I  AQ G +  D    Q + L DG  ++ +P   D  +++F  Y +Q +   
Sbjct: 182 EAEQGQSNIVLAQGGKVIEDETGGQRLQLRDGVQYQGTPKQVDFQVIEFGGYQMQIKEQE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +    K +   +  L+           +     ++EFH RL   L   +  LI++  A 
Sbjct: 242 VNERRRKLSALPIEELM----------KQEGPESKAEFHWRLAIPLSIPLLTLIAVPMA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFL 343
              +  ++ K   +F ++ +  G F         +     P Y+ + ++ L
Sbjct: 291 --RVNVRQGKFAKMFPAILLYLGYFGLMIAGRKALEDGIIPGYLGMWWIHL 339


>gi|116074701|ref|ZP_01471962.1| possible permease [Synechococcus sp. RS9916]
 gi|116067923|gb|EAU73676.1| possible permease [Synechococcus sp. RS9916]
          Length = 389

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/376 (13%), Positives = 136/376 (36%), Gaps = 22/376 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + +++  +    + +      ++  +  + + +  +  S   + I L++    +P+ L
Sbjct: 18  LLDRWLISELVGPLIFAIAAFTVVSLSVGVMFELVRKIVESGLPVLIALQVLLLRLPSFL 77

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M T    + ++ N+EL  + + G +   +I P L L+++++   F+  ++I
Sbjct: 78  VISFPMATLMATLLAYSRLSANSELTALRSVGVTARRMIAPALALSLVMTTLTFVFNDVI 137

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-------------YIKISKYNPNN 168
            P+     +    +A      +   +++ +     L              +  ++     
Sbjct: 138 VPRANRNAEVTLQRALGKAIATEKGDDIVYSRFGRLAGADEGDRTRGLAQLFYAREFRKG 197

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           T+QG+ ++D       ++  A     +         +G+    +P    I+  +F  Y  
Sbjct: 198 TMQGVTLLDFSRVGFTQMLVADEAKWNDKEGKWEFLNGQSVTLTPEGGTIT-AQFDRYLY 256

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYR---PELLETYRSEFHKRLTQWLFPVIF 285
              +A      L  +  N++ L               +     R    ++ T  +  ++F
Sbjct: 257 PLSAAPVRIAKLPKDANNMTVLEAVEAEQLLRDAGDRKEARRLRVRIQEKFTLPMACLVF 316

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           GLI      K     +  +     IS+ +   V++  S+    +       P+L  ++  
Sbjct: 317 GLIGSSLGAKP--NNRTSRSQGFGISVVL-ILVYYVLSFSFSSLGVKGTLPPLLAAWMPV 373

Query: 346 ISSI-FLLMIKKKYTK 360
           + S+     + ++ ++
Sbjct: 374 LISLAGGWTLLRQASR 389


>gi|170288881|ref|YP_001739119.1| permease YjgP/YjgQ family protein [Thermotoga sp. RQ2]
 gi|170176384|gb|ACB09436.1| permease YjgP/YjgQ family protein [Thermotoga sp. RQ2]
          Length = 1061

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 123/356 (34%), Gaps = 6/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L+     FL+     +    +  + Q  +L+      +  L  +  Y +P  
Sbjct: 1   MKVLIKYLLKLSVVPFLIGLGGFIVFVSLEILYQLSDLIVRHRVGIEKLFLMLYYYLPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +      + ++   EL+ I   G S+  LI P L L  LLSI +F   + 
Sbjct: 61  VAMGVPVGVLLAIFWTFSRLSEERELMAIQVHGISQKNLIVPFLILGALLSIAVFFLSDQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+ +S  ++  +K  L     ++ EN+  ++ DD Y  + KY+   +     ++    
Sbjct: 121 IVPEYQSKAEEAMSKYVLKKPEVFVVENVISKIGDDQYFYVEKYDERTSTMWNVVIFRYG 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--TI 238
            +   +    +  +        L DG  +           + F    L           +
Sbjct: 181 HEETIV---TAKRVQKKGNDWYLFDGNYYTVDKDGFLKLDVHFSEMKLDITEDIEKLLRV 237

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                +     L            +    +  E H R    L P++  L+ +  +    L
Sbjct: 238 GKTPREMTGRELKEKIEFFKKVGVK-PSPWVVELHSRYANSLTPIVIVLVGVPLSLLFQL 296

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +   +   F+ + +  G     S +  +   +P   P +   +F I    L ++
Sbjct: 297 RSKSWGVIFTFVLVVLYQGSGAWLSAMGKENLLDPVLAPWIPNIVFTIVGTLLFIL 352


>gi|309390182|gb|ADO78062.1| permease YjgP/YjgQ family protein [Halanaerobium praevalens DSM
           2228]
          Length = 366

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/368 (15%), Positives = 125/368 (33%), Gaps = 18/368 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPT 59
           MK+   YI + +   F         I     ++  +    +     +  L+K+    +P 
Sbjct: 1   MKTLNKYIYKELIAPFFFGVAAFTGIFIGTDLIFELTEFYTKWGVEVFTLIKLFFLKLPE 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + T      ++ ++E+  +   G S + L+ P L L +L S        
Sbjct: 61  IIVLTFPMASLLGTIMAYNRLSGDSEITAMRAGGVSILALVMPALILGLLTSGVTIGISE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-------LQG 172
            + P      +Q+  +AQ        + +LF    D    +       ++       ++ 
Sbjct: 121 FLVPNANYQAEQIMYQAQHGEQRPETQYDLFLTPMDSRTRRPDYMLYAHSFNGDSGIMKD 180

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--ISIMKFKSYTLQT 230
           + +    D +   +  A+S     D       DG ++     ++   +    ++S     
Sbjct: 181 VVVQSFEDGKPDSVLEAESAEWLSDG--WHFYDGIIYFLDRENRQPALEFSTYRSREEIH 238

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
               +  +    ++ N+  L N +      +       R EFH R +  L   IF L++ 
Sbjct: 239 SPTQAGKLGKDIDEMNIREL-NEHIALKEEQGRQAYAERVEFHHRFSIPLASFIFALLAA 297

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISS 348
               K    R         IS+ + F +++    +   +       P L  +L    I  
Sbjct: 298 PLGIKP--QRSAGSATGFGISIIVIF-IYYVLMTVGDALGSQGTIEPWLGAWLQNIVIFV 354

Query: 349 IFLLMIKK 356
           + L ++ K
Sbjct: 355 VGLALLFK 362


>gi|118580061|ref|YP_901311.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
 gi|118502771|gb|ABK99253.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
          Length = 382

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/362 (16%), Positives = 145/362 (40%), Gaps = 11/362 (3%)

Query: 1   MKS-FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           MK    L I+R I   FL+       +  + ++++   +V S   +L  + ++   L+P+
Sbjct: 1   MKRTLYLSIIREITSLFLLGLGIFTLVLLMGRMIKLTEMVISRGVALADMGRMIICLMPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L    P  F +        ++ ++E+ ++   G S + ++ PVL  A++ +     +  
Sbjct: 61  FLVYTIPMAFLLAVLLTFGRLSADSEITVMKACGISLVQIMPPVLLCALVAATLGLYAGV 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDS 178
           +  P        +S         S + E +F+     + +    Y+   +TL G+ I D 
Sbjct: 121 VGVPWGNRAFAAMSFDMLSQNVSSTIREKVFWDDIPGIVLYTDHYDEERHTLSGVVINDE 180

Query: 179 RDTQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           R+       +A SG +    +     +IL  G +H       +  ++ F  Y +   +  
Sbjct: 181 RNASRPLTIFASSGLVAGGANPRDVRLILRSGSIH-AQGRGGEYRLIHFAEYVMNIAAPG 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +  V +A  +     L+ +  +P+ +P+L +   +E H R       ++F ++++    
Sbjct: 240 GTDTVTRAPREMTVTELHRSIASPSTQPKLRKKMATEMHSRFALPFASLVFAVLAVPLGL 299

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLM 353
                R+  +     IS+ +    +   S +    E+  +  P+ L++       +  ++
Sbjct: 300 ---QNRRSARSFGFAISIGVLLAYYILLSLLGTMAEKGSFPAPLALWIPNMVFLVLGWVL 356

Query: 354 IK 355
           ++
Sbjct: 357 LR 358


>gi|148270164|ref|YP_001244624.1| permease YjgP/YjgQ family protein [Thermotoga petrophila RKU-1]
 gi|281412494|ref|YP_003346573.1| permease YjgP/YjgQ family protein [Thermotoga naphthophila RKU-10]
 gi|147735708|gb|ABQ47048.1| permease YjgP/YjgQ family protein [Thermotoga petrophila RKU-1]
 gi|281373597|gb|ADA67159.1| permease YjgP/YjgQ family protein [Thermotoga naphthophila RKU-10]
          Length = 1061

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 123/356 (34%), Gaps = 6/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L+     FL+     +    +  + Q  +L+      +  L  +  Y +P  
Sbjct: 1   MKVLIKYLLKLSVVPFLIGLGGFIVFVSLEILYQLSDLIVRHRVGIEKLFLMLYYYLPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +      + ++   EL+ I   G S+  LI P L L  LLSI +F   + 
Sbjct: 61  VAMGVPVGVLLAIFWTFSRLSEERELMAIQVHGISQKNLIVPFLILGALLSIAVFFLSDQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+ +S  ++  +K  L     ++ EN+  ++ DD Y  + KY+   +     ++    
Sbjct: 121 IVPEYQSKAEEAMSKYVLKKPEVFVVENVISKIGDDQYFYVEKYDERTSTMWNVVIFRYG 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--TI 238
            +   I    +  +        L +G  +           + F    L           +
Sbjct: 181 HEETII---TAKRVQKKGNDWYLFNGNYYTVDKDGFLKLDVHFSEMKLDITEDIEKLLRV 237

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                +     L            +    +  E H R    L P++  L+ +  +    L
Sbjct: 238 GKTPREMTGRELKEKIEFFKKVGVK-PSPWVVELHSRYANSLTPIVIVLVGVPLSLLFQL 296

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +   +   F+ + +  G     S +  +   +P   P +   +F I    L ++
Sbjct: 297 RSKSWGVIFTFVLVVLYQGSGAWLSAMGKENLLDPVLAPWIPNIVFTIVGTLLFIL 352


>gi|193212079|ref|YP_001998032.1| permease YjgP/YjgQ family protein [Chlorobaculum parvum NCIB 8327]
 gi|193085556|gb|ACF10832.1| permease YjgP/YjgQ family protein [Chlorobaculum parvum NCIB 8327]
          Length = 383

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 105/344 (30%), Gaps = 5/344 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI+R     F  S      +  +I +++ ++   S    +  ++      +P  
Sbjct: 26  LSIIDRYIIRQFLTIFFFSLASFAALFIIINLIENLDRFMSRQIPVGQIIIYYLSGLPDT 85

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    + +  V   ++  +EL  +   G S   L+KP L     ++ F  ++   
Sbjct: 86  FLLTSPLSVLLASLFVTGKLSMQSELPALKAAGMSLSRLMKPFLLATFFITAFNLVNSCF 145

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      K    +   +      E        + +           +   + +     
Sbjct: 146 ITPAMYDLSKGYEKRYLKSQKEQQEEAVHIRESKNRILTVGQINRDRQSAVSVSLETFDG 205

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI-SIMKFKSYTLQTESANSSTIV 239
           ++      A S  I  + +  +  + +        + + +     +  L       + I 
Sbjct: 206 SRLASRLDADSLRISSNGRHWVFYNTKQRTFVNGRETLVANPGADTLKLALAKNTFTMID 265

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
              ++ NL   L             LE    E   ++   L  ++  LI +         
Sbjct: 266 ADPDEMNLVQHLAFIAQKKRSGLPGLERAEVELQTKIALPLASMLIVLIGVPL---STRK 322

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           ++         SL I    + G    I  +  +    P+L  +L
Sbjct: 323 KRSGLALEAATSLLIG-LFYLGMLKTIGSLGYDGLINPVLAAWL 365


>gi|332142603|ref|YP_004428341.1| permease YjgP/YjgQ [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552625|gb|AEA99343.1| permease YjgP/YjgQ [Alteromonas macleodii str. 'Deep ecotype']
          Length = 366

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 124/364 (34%), Gaps = 22/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+L+   +S L     ++ I   ++ ++ +   S       ++L   G   P +  
Sbjct: 2   LIFRYLLKETLKSQLAIFFILMAIFVTLRFVRVLGDASDGDIPAGLVLGFLGLYAPILSS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        +  ++E+ ++   G S   + + +LFL++L+ I          
Sbjct: 62  LVLPISAYLGIMLAHGRLYVDSEMTVMRACGISEWYVTRVMLFLSVLIMIVTGAITLYFA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQGIFIVDS 178
           P       QL  KA+     S L    F +  ++        + K +    +       S
Sbjct: 122 PLAAENEYQLREKARNEAGISALMPGRFQQTGNEKAVIFVHDVDKNDKLQRVFLSQNQTS 181

Query: 179 RDTQTHKIYYAQSGSIDLDRQAI---ILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                 ++ YAQ+G +  +       +L  G  +      K    ++F  Y +Q     +
Sbjct: 182 DSEGDVRVVYAQTGEVASNPDGTRNLVLKQGVQYEGIQSEKAYRKVEFDEYQIQIADKPA 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                K +    S L   +              R+E   R+   L      LI++     
Sbjct: 242 DETRRKVSVLPTSELWEDDSIEA----------RAELQWRIAIPLSIPFLILIAVPL--- 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLM 353
            A+  ++ +   +F ++ +  G F         +   + P  + + ++    +     L+
Sbjct: 289 SAVDPRQGRFGKMFPAILLYLGYFLLLLASRRVLEDGKMPPQLGLWWVHTIMLIIGITLI 348

Query: 354 IKKK 357
           ++ +
Sbjct: 349 VRDR 352


>gi|153004268|ref|YP_001378593.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152027841|gb|ABS25609.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 370

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 130/369 (35%), Gaps = 14/369 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    Y+ + I   F    LF+  I    Q+L + +++  S  SL  +  +  YL+P  
Sbjct: 1   MRLLHRYLAKEILLPFAAGLLFLTQILLATQLLAQADVLFGSGVSLVDVGAVVLYLLPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P  F +     +  +  + E++ +   G S   L+   L + + ++         
Sbjct: 61  LGYVLPIAFLLGAVLGVGRLAEDREVVALGAAGFSPAFLVPVPLAIGVAVAGLGLWLSLD 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+     +    +       + +    F+       +   +         + I D  D
Sbjct: 121 VVPRSLDAARLRLNEIVKRNVMNDVRPGTFYDQIPGYTLYA-ERVHGGRWGNVLISDRSD 179

Query: 181 TQTHKIYYAQSGSIDL----DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                +  A++G ++     +   ++L+DGEVHR+   + +  +  F+   +      + 
Sbjct: 180 PAAPVLALARAGGLEPVGAGEEMRLVLDDGEVHREQVDADEYVLATFRRADVVLGLGTAL 239

Query: 237 TIVLKANDQNLSFL--LNPNPNNPNYRPELLETYRSE--FHKRLTQWLFPVIFGLISIVA 292
           +     +      L  L         + +     R+E   H+R+   L  + F L+++  
Sbjct: 240 SDRNAVSRTGRDDLAGLQARVAEARAKGDAAAARRAEGSLHRRIASPLAVIPFALLAVPL 299

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY-LFLFCISSIFL 351
                  R+  +   +  +  +    +          ++     P+   L    +S+I L
Sbjct: 300 G----ASRRAGRAFGVGATFLVVVAHYLLLRSGEVMAQRGVLPAPLALQLPTLVLSAIAL 355

Query: 352 LMIKKKYTK 360
            +I  +  +
Sbjct: 356 ALIALQVRR 364


>gi|94968543|ref|YP_590591.1| YjgP/YjgQ family protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550593|gb|ABF40517.1| transporter, YjgP/YjgQ family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 792

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/363 (14%), Positives = 136/363 (37%), Gaps = 15/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +  ILR     F+M     V +A V    + +  +  +  S+ +L      L P+++ 
Sbjct: 432 LLDDMILRDFLLYFVMVLTTFVMLALVFTFFELLGDIVKNRVSVVMLGDYLLNLSPSLIY 491

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++TP    +        M R+ E+  +  TG S   +  PV+ +A +++  LF+ + +  
Sbjct: 492 LMTPLSVLLAVLVTFGLMQRSNEITAMKATGISIYRVAFPVIAIAGVVAASLFVFDQLYI 551

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG----IFIVDS 178
           PK     + L  + +     +YL  +  +    +  I   +    +  +     IF  D 
Sbjct: 552 PKANKRQETLRNEIKGKPPQTYLRPDRKWIFGSNNTIYYYEVYDADQNRFGGISIFQFDP 611

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--- 235
           +        YAQ    +   Q  +   G + + +  S       F+  T+   +      
Sbjct: 612 KTFALQSRIYAQHAHWEDGLQKWVFEQGWMRKLN-GSAIEEFKPFEVETIALAAEPPAYF 670

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
              V ++ + +   LL    ++       +  +R + +K+L   +  ++  +++I  +  
Sbjct: 671 KKEVRQSQEMDYQELLR-YIHDLQQSGFDVVRFRVQLYKKLAYPIITLVMAILAIPFSVY 729

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCISSIFLL 352
               R+   +  +  ++ I+  ++W  + +   +        +L  +   L    +   +
Sbjct: 730 --RQRRGGPLAGVATAIGIAI-LYWVSAGLFEAMGNANQLPALLAAWAPNLIFGFAAGYM 786

Query: 353 MIK 355
           +++
Sbjct: 787 VLR 789



 Score =  120 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/377 (12%), Positives = 133/377 (35%), Gaps = 26/377 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    YIL  +     +      F+ ++  + + + L+  ++  L  + +I    +PT L
Sbjct: 4   RILTRYILGEVLSHGAIGLALFTFVIFMRDLGRLLELIVRNSAPLPSVAEIFFLTLPTAL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L+ ++ ++E+  + ++G   +  ++ V   ++ L I   ++   +
Sbjct: 64  TVTLPMAVLVGILIGLSRLSADSEVTAMRSSGLGSLFFVRIVSIFSVALWILALVNNLYV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP---NNTLQGIFIVDS 178
            P+  + +  L  K + +     ++  +F+    +  + +        +   +G+F+ D 
Sbjct: 124 APRSAAALAHLQDKLKSSQASFEVQPRVFYEDFKNYVLYVEDSKSGSGSALWRGVFLADV 183

Query: 179 RDTQTHKIYYAQSGSIDLDRQAII---LNDGEVHRKSPIS-KDISIMKFKSYTLQTESAN 234
                 KI  A+ G +  +    +   L +G     +P       +  F    +  +   
Sbjct: 184 STPSQPKITMAERGVVVAEGPNSLHLHLENGTQQETNPKDPTQYQVSTFDQTDIPIQLPE 243

Query: 235 SSTIV----LKANDQNLSFLLNPNPNNPNYRPELL---------ETYRSEFHKRLTQWLF 281
           ++       +   + +   L     +        L           Y  EF +R+     
Sbjct: 244 TNDKPAPELVPVAELSTQELWRLAHSGGVSAGHYLGNSIAQVKARWYAVEFQRRIALPTA 303

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
            ++  L+ I         R+  K     +++ + F  ++  S I   + +     P + +
Sbjct: 304 CLVLTLVGIPLGLS---SRRGGKSMGFVLTIILVFA-YYVVSLIGVSLGRQGKLPPAVGV 359

Query: 342 F--LFCISSIFLLMIKK 356
           +          ++++ +
Sbjct: 360 WMANVVFLVAGIMLLHR 376


>gi|218438808|ref|YP_002377137.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
 gi|218171536|gb|ACK70269.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
          Length = 434

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/373 (12%), Positives = 125/373 (33%), Gaps = 22/373 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + Y+   +   F++S      +   +  +    N V      +   LKI  Y +P  
Sbjct: 63  SLMDRYLTSQLIPPFVLSVGIFTSMGVALANLSDLSNKVFEYDLPVIDALKILLYRVPEF 122

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    + T      ++  +EL+ + + G S      P + L++++S   F+    
Sbjct: 123 FAYALPISVLLTTLMTYGRLSSESELIALRSCGISLWRATVPAVILSVIVSGITFVFSEG 182

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL------------YIKISKYNPNN 168
           + P+      ++  K        +  +++F+   +++             +  ++     
Sbjct: 183 VVPETNYRATEILVKVLHEERNFWQNKDIFYPNYEEVKLANGQTFRQLKTLFYAEKFDGQ 242

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            ++ + I++      ++I  + S   + ++      +G V+           + FK    
Sbjct: 243 KMRSLTIINWLGDHLNEIVVSDSAQWNANQNIWDFFNGTVYLIDTDKSYKEAVPFKHQQF 302

Query: 229 QTESA--NSSTIVLKANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
                    +T      + NL   L        +   + +  +    H+++      ++F
Sbjct: 303 PLPKEAFEFATQGRNPYEMNLFQALQYKRLLEASGDNKNVRFFDVRIHQKIAFPFVCLVF 362

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL-- 343
           G++      K   + +      + +++ I F  ++  ++            P++  +L  
Sbjct: 363 GIMGAAIGAKPQQMSRG---TSLGLTVGIVFS-YYMLNFFTGSFGMIGLLSPMMAAWLPN 418

Query: 344 FCISSIFLLMIKK 356
                I   ++KK
Sbjct: 419 LFGVGIGGWILKK 431


>gi|126175309|ref|YP_001051458.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
 gi|217972440|ref|YP_002357191.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
 gi|125998514|gb|ABN62589.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
 gi|217497575|gb|ACK45768.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
          Length = 370

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 137/371 (36%), Gaps = 25/371 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  +P ++ 
Sbjct: 2   IVFKYLIREVLKAQIAVLLVLLTIFISQHFVRILADASDGDFPASLIMTLIGLNLPYLVI 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M    E++++   G S   + +  L LA++  +F       + 
Sbjct: 62  LVLPLSLFLGILLAHGRMYSENEMVVLHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-----VD 177
           P       Q+  KAQ     + L +  F    +   +   +    +              
Sbjct: 122 PWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELDKVFVAQLPDP 181

Query: 178 SRDTQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             +T    +  A+ G +  D    Q + LNDG  ++ SP +KD  +++F  Y +Q +   
Sbjct: 182 DDETGVTNVVVAKGGRVQEDSSGAQQLNLNDGVRYQGSPKAKDYQMIEFGGYKMQIKEQQ 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +   +  L+                  +EFH RL   L   I  LI++  A 
Sbjct: 242 VDERRRKLSALPVDELV----------KIEGAEAVAEFHWRLAIPLAIPIMTLIAVPLA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +F ++ +  G F         +     P Y+ + ++ +  +     L
Sbjct: 291 --RVNVRQGKFAKMFPAVLLYLGYFGLMVAGRKALQDGIIPLYLGMWWIHISALLMGLFL 348

Query: 353 MIKKK--YTKI 361
           + K +  +++I
Sbjct: 349 LGKDRPIFSRI 359


>gi|332991780|gb|AEF01835.1| permease YjgP/YjgQ [Alteromonas sp. SN2]
          Length = 366

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 121/364 (33%), Gaps = 22/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+L+   +S L     ++ I   ++ ++ +   S       ++L   G   P +  
Sbjct: 2   LIFRYLLKETLKSQLAIFFILMAIFVTLRFVRVLGDASDGDIPAGLVLGFLGLYAPILAS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        +  ++E+ ++   G S   + + +LFL++L+ I          
Sbjct: 62  LVLPISAYLGIMLAHGRLYVDSEMTVMRACGISEWYITRVMLFLSVLIMIVTGAITLYFA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQGIFIVDS 178
           P       QL  KA+     S +    F +  +         I   +    +        
Sbjct: 122 PMAAENEYQLREKARNEAGLSAIIPGRFQQTGNAKAVIFVHDIDTDDQLRRVFLSQNKTE 181

Query: 179 RDTQTHKIYYAQSGSIDLDRQAI---ILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                 ++ YAQ+G +  +       +L  G  +      K    ++F  Y +Q     +
Sbjct: 182 NGENQVQVVYAQTGQVASNPDGTRNLVLKQGVQYEGQQSQKSYRKVEFDEYQIQIADKPA 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                K +    + L            +     R+E   R+   L      LI++     
Sbjct: 242 EEARRKVSVLPTTELW----------GDESIEARAELQWRIAIPLSLPFLILIAVPL--- 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLM 353
            A+  ++ +   +F ++ +  G F         +   + P  + + ++    +     L+
Sbjct: 289 SAVDPRQGRFGKMFPAILLYLGYFLLLLASRRVLEDGKIPPQLGLWWVHTIMLIIGVALI 348

Query: 354 IKKK 357
           ++ +
Sbjct: 349 VRDR 352


>gi|239993539|ref|ZP_04714063.1| predicted permease [Alteromonas macleodii ATCC 27126]
          Length = 353

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/354 (11%), Positives = 126/354 (35%), Gaps = 3/354 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R +  +  ++   ++ ++ +I+ ++++  +      + +        +   L
Sbjct: 3   KILDLYIARTLLGTITVTLSVLIGLSALIKFVEQLRKIGEGDYDMLVAFIYVLLSLARDL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     +  +  N+EL+++   G SR  +I   +   +++ + +      +
Sbjct: 63  EQFFPMATLLGGLIGMGVLASNSELVVMQAAGMSRWNIINSAMKSTLVMILLVMAVGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   +  KQ+  +A    +    ++ ++ +  D         + ++         + D 
Sbjct: 123 TPYSETKAKQIRTEAISGGSLFSSDKLVWAKDGDRFVSIGQVLSQDSLKDVSIFSFNPDL 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
               I +A++G+   D     L+D EV + +  +  +       +           + +K
Sbjct: 183 SLESITHAKNGAF--DGDGWWLSDVEVTKFTETNVTVDENNRMRWNSTLTPDKLGIVAVK 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               +++ LL+   N      +    Y+    +++ Q +   +  L+++           
Sbjct: 241 PEALSITGLLD-YVNYLENNDQDPSRYQLALWRKVFQPISVGVMLLMALSFIFGPLRSVT 299

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                 + +     F +       +  + Q P ++  L   L   +   +++ +
Sbjct: 300 MGARVIMGVLTGFGFFILNEVFGPVSLVYQLPPFLGALLPSLLFAAIAGVMLRR 353


>gi|116747638|ref|YP_844325.1| permease YjgP/YjgQ family protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116696702|gb|ABK15890.1| permease YjgP/YjgQ family protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 360

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 109/355 (30%), Gaps = 2/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    Y+LR     F+++      +  ++   + +             +       P+V
Sbjct: 1   MRIIPRYVLRHFLPVFMLALFTFTSLYLIVDFFENMEQFIEKRVPAADTIAYFLNKTPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +     L  + RN EL+ ++  G   +T + P++  A  ++    +    
Sbjct: 61  AAQGIPMAALLGALITLGLLKRNRELIALEAAGVKTVTYVTPIVAAAFFIAAVHLVLGET 120

Query: 121 IEPKCRS-TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           +       + K  + + Q             +    ++  ++  Y+          +   
Sbjct: 121 VSRSMNQVSTKIWNEQVQRRKGHFSWGVENVWYHGQNVIYQVRFYDKRTQTLEKVSLFFL 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D     +    +     D        G   + S    +      +++TLQ   A+ S + 
Sbjct: 181 DPSFRLVQRLDARRFRWDGARWQAEQGLFLKFSESGTEQETFDQRAFTLQETPADFSGLE 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               + +   L                 Y  E H R+   L  ++  ++ I+ A ++++ 
Sbjct: 241 TIPEELDWLDLYR-YAEKIRQEGYNSLPYIIELHLRVAFPLSAIVLAILGIIIALRQSMH 299

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                   I + +  S+ V       +      P  + +    +  +++   L I
Sbjct: 300 GGIALGVGIGLLVGSSYFVVQQLGCALAGAGALPPVVGVWAANVIFLAAAVYLWI 354


>gi|42523904|ref|NP_969284.1| YjgP/YjgQ permease [Bdellovibrio bacteriovorus HD100]
 gi|39576111|emb|CAE80277.1| predicted permease YjgP/YjgQ family [Bdellovibrio bacteriovorus
           HD100]
          Length = 367

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 140/369 (37%), Gaps = 14/369 (3%)

Query: 1   MKSFE-----LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGY 55
           M  F       YI   +  SF++  L  V I  + Q+L+          ++  + +I GY
Sbjct: 1   MSIFNGKKAAQYIFFEMLPSFILGLLVFVSIILMFQVLRLTEFALVHGVAMKTIAEIIGY 60

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
           +I ++LP++ P             +++++E++ +  +G    TL+ P L LA L+ +   
Sbjct: 61  VIISMLPILFPMALLFSVLLTYGRLSQDSEIVAMKASGLPMGTLLLPALILATLVGVISA 120

Query: 116 ISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIF 174
                I P      + L ++       + ++E  F     D+ I  ++ N +   L+ +F
Sbjct: 121 QMSFNIAPWGNRQFEVLYSRLANTKAAAIIKEGTFAEGFFDMVIYANEVNTDKGLLKKVF 180

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQ---AIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           I D ++        A++G I  D       IL           +K  + + F +Y ++  
Sbjct: 181 IYDEKNGDVPLTIIAKAGEIVPDPTRPGHEILLQLNQGEIHRQAKTHTKISFDTYDVRFS 240

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
              +     K+        +           E+  T +SE+HKR    +  ++F +I + 
Sbjct: 241 EPQNIEEKAKSPPSLTLEEVRNRLKEDIKDKEVRRTLQSEYHKRWAISVLCIVFAMIGV- 299

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSI 349
                   R+  K   + + + I    +W          ++      L ++      +++
Sbjct: 300 -GLGTTTNRRAAKAGGMILCIGIIIF-YWILYVAAEGAARSGALPAALAIWTPNVLFAAL 357

Query: 350 FLLMIKKKY 358
            +  +++ +
Sbjct: 358 GVETLRRNW 366


>gi|319896845|ref|YP_004135040.1| inner membrane protein [Haemophilus influenzae F3031]
 gi|317432349|emb|CBY80704.1| conserved inner membrane protein [Haemophilus influenzae F3031]
          Length = 358

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 117/357 (32%), Gaps = 1/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + YI + I  +   + L +V ++ +I+ +++   V   T  +   +  +G  IP  
Sbjct: 2   MNTLDRYIGKSILGAIFATLLTLVGLSAIIKFVEQFRSVGKGTYDIWQAVAFTGLTIPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ + G SR  +   V+  A  L +   +    
Sbjct: 62  IETFFPMAALLGALIALGNLASRSELVVMQSAGFSRFKIGIAVMKTASPLVLLTMMIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+     + + AKA    +   ++  ++ +            +             + 
Sbjct: 122 GIPQTEQFARDMRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFEQQ 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               K+ +A   S   D     L        +      +    +++           + L
Sbjct: 182 HNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAVSL 241

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    ++S L +   +      + +  +   F +++ Q +   +  L+++          
Sbjct: 242 RPTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRSV 300

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    I +   F V          +   P     L   L  I  I+ L+ +K+
Sbjct: 301 TAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKR 357


>gi|269797613|ref|YP_003311513.1| permease YjgP/YjgQ family protein [Veillonella parvula DSM 2008]
 gi|269094242|gb|ACZ24233.1| permease YjgP/YjgQ family protein [Veillonella parvula DSM 2008]
          Length = 363

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/368 (13%), Positives = 122/368 (33%), Gaps = 13/368 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        I      + +    ++     L ++++     +P+
Sbjct: 1   MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMQAFVLALPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + +    + ++  +E++++   G S + L  PV  +A+++SI       
Sbjct: 61  IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNE 120

Query: 120 IIEPKCRSTIK----QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
            + P+     +    +   K     T +++        +    +    Y+       +  
Sbjct: 121 FVVPRTNHMYQTIVREQIMKNASPQTQNHIVLKTMNGDELGTLMYAKSYDAETKQLSMIT 180

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SA 233
           V              + +   + Q  ++ +G ++  S  +     MKFK  +L  +    
Sbjct: 181 VQQFGEGGKLQQVENADTAIWNGQYWVMQNGIIYDLSAGNGVERTMKFKEQSLPIKSAPK 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +      K  +  +  L +                  E ++R T  L   +F L+     
Sbjct: 241 DIQQDQRKPEELTIKELRHQIRAYKAAYT-NANKLEMEMYQRFTIPLASFVFALVGAPLG 299

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLL 352
                 +QR      F    +   +++G       + +      +L   +   +  I  L
Sbjct: 300 L----QKQRSSSSIGFGISILIIFIYYGVMTFAGALGKGGALPTLLAALIPDTLGIIAGL 355

Query: 353 MIKKKYTK 360
            +  + +K
Sbjct: 356 YLNWRVSK 363


>gi|304410148|ref|ZP_07391767.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
 gi|307302141|ref|ZP_07581899.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
 gi|304351557|gb|EFM15956.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
 gi|306914179|gb|EFN44600.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
          Length = 370

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 137/371 (36%), Gaps = 25/371 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  +P ++ 
Sbjct: 2   IVFKYLIREVLKAQIAVLLVLLTIFISQHFVRILADASDGDFPASLIMTLIGLNLPYLVI 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M    E++I+   G S   + +  L LA++  +F       + 
Sbjct: 62  LVLPLSLFLGILLAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-----VD 177
           P       Q+  KAQ     + L +  F    +   +   +    +              
Sbjct: 122 PWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELDKVFVAQLPDP 181

Query: 178 SRDTQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             +T    +  A+ G +  D    Q + LNDG  ++ SP +KD  +++F  Y +Q +   
Sbjct: 182 DDETGVTNVVVAKGGRVQEDSSGAQQLNLNDGVRYQGSPKAKDYQMIEFGGYKMQIKEQQ 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +   +  L+                  +EFH RL   L   I  LI++  A 
Sbjct: 242 VDERRRKLSALPVDELV----------KIEGAEAVAEFHWRLAIPLAIPIMTLIAVPLA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +F ++ +  G F         +     P Y+ + ++ +  +     L
Sbjct: 291 --RVNVRQGKFAKMFPAVLLYLGYFGLMVAGRKALQDGIIPLYLGMWWIHISALLMGLFL 348

Query: 353 MIKKK--YTKI 361
           + K +  +++I
Sbjct: 349 LGKDRPIFSRI 359


>gi|218440672|ref|YP_002379001.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
 gi|218173400|gb|ACK72133.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
          Length = 388

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 133/365 (36%), Gaps = 20/365 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + Y+   +   FL        +   +  +   +  V+ S  SL + L+I    +P  
Sbjct: 17  SIVDRYLFMELLIPFLFGMGLFTSLGIAIGTLFDLVRKVTESGLSLTVALQILSLKMPEF 76

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T    + +  ++EL+ + + G S   L+ P + L+++++   F   + 
Sbjct: 77  IVLAFPMSILLATLMAYSRLASDSELIALRSIGLSPYRLLVPSIILSLMVTGVTFFFSDY 136

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI------------KISKYNPNN 168
           + P+     KQ+ A A      +++E+N+ +     + +              ++     
Sbjct: 137 VAPQATQQAKQILADALKKDQPAFVEDNIIYPEYRKITLENGRDQTVLTRLFYAEKFDGQ 196

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            +QG+ I+D      ++I  +QS   +LD  +    +G ++  +P     +I++F+   L
Sbjct: 197 QMQGLTILDRSQPGVNQIVTSQSAMWNLDSNSWDFYNGTIYLIAPDGSYRNIVRFQHQKL 256

Query: 229 QTESANSSTIVLK--ANDQNLSFLLNPNPNNPNYRPEL-LETYRSEFHKRLTQWLFPVIF 285
               A       K    + +++            + E           ++       ++F
Sbjct: 257 DLPRAPLDIAKGKQNPAEMSIAEAKEYLRIVKLSKNEPRARKVEVRIQEKYALPFVCIVF 316

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           GLI      K        K     I + + F  ++  S+I   +       P++  +L  
Sbjct: 317 GLIGSAIGLKPQNN---NKATSFGICIILIFS-YYLLSFIASSMGIWGIISPVVSAWLPN 372

Query: 346 ISSIF 350
              I 
Sbjct: 373 TLGII 377


>gi|260886292|ref|ZP_05897555.1| membrane protein, YjgP/YjgQ family [Selenomonas sputigena ATCC
           35185]
 gi|330839725|ref|YP_004414305.1| permease YjgP/YjgQ family protein [Selenomonas sputigena ATCC
           35185]
 gi|260864011|gb|EEX78511.1| membrane protein, YjgP/YjgQ family [Selenomonas sputigena ATCC
           35185]
 gi|329747489|gb|AEC00846.1| permease YjgP/YjgQ family protein [Selenomonas sputigena ATCC
           35185]
          Length = 363

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/355 (11%), Positives = 120/355 (33%), Gaps = 10/355 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +  + YI R +  +F         +      + +    ++    S   ++K+  + +P +
Sbjct: 4   RLLDKYIFREVCLAFFFGICGTSAVFVGSGTLFRIAQYITEYGASFGSVVKMFIFSLPAI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +        ++ ++E+  + + G S   +  PV+ L +++SIF  +    
Sbjct: 64  AIYTFPMSMLLAALLTFGRLSSSSEITAMKSCGVSFYRIAAPVIVLGVVVSIFSILFTEH 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI---KISKYNPNNTLQGIFIVD 177
           I P+  +  + + A           ++++  +   D  +     ++     T     +  
Sbjct: 124 IVPRANNAYENVIAYEIQGNAAPKSQDHIVIKEIKDGEMQRLMYARRYDAATETLEGVTL 183

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               Q    Y   +     +     +  G ++  S    + ++ +F    L   +     
Sbjct: 184 QSFEQGETKYVQDAAYAKWEGTQWTMYRGAIYEVSGGKSEHTM-RFDKQVLPINAGPGRI 242

Query: 238 IV-LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +   K  ++     L         +    +   +E ++R+T  +  ++F +I +    + 
Sbjct: 243 VREQKKPEELTMKELRQQIELMRTQFVDTKKLETELYQRITIPMASLVFAIIGVPLGIQP 302

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                 + I        + F  ++    +   + Q+    P   ++L  ++ + +
Sbjct: 303 TRSSSSRGIGLS----LLIFFCYYVLMTLAGALGQSGALNPAYAVWLPNVAGLLI 353


>gi|254418640|ref|ZP_05032364.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
 gi|196184817|gb|EDX79793.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
          Length = 397

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 136/360 (37%), Gaps = 7/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R I    + +C  +  I  + Q L ++ ++    +S+ +++K++   +P +
Sbjct: 20  MTLIQRYLFRQISLPVVAACASLAGIGILSQSLDQLEVIVERGQSVWVMVKLTLLALPQL 79

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     LT M R  EL      G +R  +I P   LA L+ I   +    
Sbjct: 80  LAVILPIGLFVGALIALTRMQREQELTAAFAGGMTRWQVISPAARLAFLVLILNLVMTLF 139

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            +P  +   +  +   +  L    +EE  F +  D L + + +   N  L+ +F+     
Sbjct: 140 AQPWAQREARNQAFAIRTDLAALLVEEGQFVQGPDGLTVYVQQIEQNGLLKNLFVYLDDG 199

Query: 181 TQTHKIYYAQS--GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN--SS 236
             T     A++  G    +   + + DG   + S     +  + F  Y       +  + 
Sbjct: 200 KSTQNWSAAEARFGRDAANEPVLTMIDGSWQKYS-SRGVLETLSFDRYDFPLGQFSGVTE 258

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            I  K  D  L  LL P+P              +E H R+   L+ ++   +++ A    
Sbjct: 259 QIRYKPADLYLRQLLTPSPRVLETAG-SRGELLAEAHARIAAPLYALVAMAMALAAIMGG 317

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +  R    +     +  +   V      ++     NP+   + YL    + +  + ++ +
Sbjct: 318 SFSRTGYSLRIAKAA-GVFLLVRVIGYGLVAASAWNPWMNILQYLAPLIVVAAAVRLLFR 376


>gi|160876367|ref|YP_001555683.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
 gi|160861889|gb|ABX50423.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
 gi|315268557|gb|ADT95410.1| permease YjgP/YjgQ family protein [Shewanella baltica OS678]
          Length = 370

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 137/371 (36%), Gaps = 25/371 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  +P ++ 
Sbjct: 2   IVFKYLIREVLKAQIAVLLVLLTIFISQHFVRILADASDGDFPASLIMTLIGLNLPYLVI 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M    E++I+   G S   + +  L LA++  +F       + 
Sbjct: 62  LVLPLSLFLGILLAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-----VD 177
           P       Q+  KAQ     + L +  F    +   +   +    +              
Sbjct: 122 PWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELDKVFVAQLPDP 181

Query: 178 SRDTQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             +T    +  A+ G +  D    Q + LNDG  ++ SP +KD  +++F  Y +Q +   
Sbjct: 182 DDETGVTNVVVAKGGRVQEDSSGAQQLNLNDGVRYQGSPKAKDYQMIEFGGYKMQIKEQQ 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +   +  L+                  +EFH RL   L   I  LI++  A 
Sbjct: 242 VDERRRKLSALPVDELV----------KVEGAEAVAEFHWRLAIPLAIPIMTLIAVPLA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +F ++ +  G F         +     P Y+ + ++ +  +     L
Sbjct: 291 --RVNVRQGKFAKMFPAVLLYLGYFGLMVAGRKALQDGIIPLYLGMWWIHISALLMGLFL 348

Query: 353 MIKKK--YTKI 361
           + K +  +++I
Sbjct: 349 LGKDRPIFSRI 359


>gi|166367866|ref|YP_001660139.1| hypothetical protein MAE_51250 [Microcystis aeruginosa NIES-843]
 gi|166090239|dbj|BAG04947.1| hypothetical protein MAE_51250 [Microcystis aeruginosa NIES-843]
          Length = 389

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/365 (11%), Positives = 123/365 (33%), Gaps = 21/365 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + YI   +   FL        +   +  +   +  ++ S     + LKI    +P  
Sbjct: 17  SILDRYIFVELLLPFLFGMGLFTSLGVAIGTLFDLVRRITESGLPFTLALKILLLKMPEF 76

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +      + +  ++EL+ + + G S   LI P + L+++++   ++  + 
Sbjct: 77  IVLAFPMSILLAALMAYSRLASDSELIALKSIGISVYRLIIPAIVLSLIVTGLTYVFNDY 136

Query: 121 IEPKCRSTIKQLS-------------AKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN 167
           + P                                   + +          +  ++    
Sbjct: 137 VAPAASYEANATMTKALRPNRKSFIEDNIIYPEYGKVRQPDGGEPQTVLRRLFYAERFNG 196

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             + G+ I+D    + ++I  ++S S ++++      +G ++   P     +I++F+   
Sbjct: 197 QEMLGLTILDRTQPEVNQIITSESASWNIEKNIWDFYNGTIYLIDPKGSYRNIVRFQHQQ 256

Query: 228 LQT--ESANSSTIVLKANDQNLSFLLNP-NPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
           L       + +      ++  L            +  P  +   + +  ++++     ++
Sbjct: 257 LALPRTPLDLAFRARDGSEMTLRQAREYLEILQLSGNPTKIRKLQVQIEQKISLPFVCLV 316

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           FG+I      +        K     I + + F  ++  S++   +       P++  +L 
Sbjct: 317 FGMIGAALGLRPQNS---NKATSFGICIVLIFS-YYLLSFVTSSLGIGGVLTPLMAAWLP 372

Query: 345 CISSI 349
            I  +
Sbjct: 373 NILGL 377


>gi|238019692|ref|ZP_04600118.1| hypothetical protein VEIDISOL_01566 [Veillonella dispar ATCC 17748]
 gi|237863733|gb|EEP65023.1| hypothetical protein VEIDISOL_01566 [Veillonella dispar ATCC 17748]
          Length = 363

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/368 (13%), Positives = 121/368 (32%), Gaps = 13/368 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        I      + +    ++     L +++K     +P+
Sbjct: 1   MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMKAFVLALPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + +    + ++  +E++++   G S + L  PV  +A+++SI       
Sbjct: 61  IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNE 120

Query: 120 IIEPKCRSTIK----QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
            + P+  +  +    +   K     T +++        D    +    YN       +  
Sbjct: 121 FVVPRTNNMYQTIVREQIMKNASPQTQNHIVLKTMNGNDLGTLMYAKSYNAETKKLSMIT 180

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SA 233
           V              + +   + Q  ++ +G ++  S        MKFK  +L  +    
Sbjct: 181 VQQFGEGGKLQQVENADTAVWNGQYWVMQNGIIYDISAGDGVERTMKFKEQSLPIKSAPK 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +      K  +  +  L +                  E ++R T  L   +F L+     
Sbjct: 241 DIQQDQRKPEELTIKELRHQIKAYKAAYT-NANKLEMEMYQRFTIPLASFVFALVGAPLG 299

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLL 352
                 +QR      F    +   +++G       + +      +    +   +  I  L
Sbjct: 300 L----QKQRSSSSIGFGISILIIFIYYGVMTFAGALGKGGALPTVFAALIPDTLGIIAGL 355

Query: 353 MIKKKYTK 360
            +  + +K
Sbjct: 356 YLNWRVSK 363


>gi|294793349|ref|ZP_06758494.1| membrane protein, YjgP/YjgQ family [Veillonella sp. 6_1_27]
 gi|294455780|gb|EFG24145.1| membrane protein, YjgP/YjgQ family [Veillonella sp. 6_1_27]
          Length = 363

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/368 (13%), Positives = 122/368 (33%), Gaps = 13/368 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        I      + +    ++     L ++++     +P+
Sbjct: 1   MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMQAFVLALPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + +    + ++  +E++++   G S + L  PV  +A+++SI       
Sbjct: 61  IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNE 120

Query: 120 IIEPKCRSTIK----QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
            + P+     +    +   K     T +++        +    +    Y+       +  
Sbjct: 121 FVVPRTNHMYQTIVREQIMKNASPQTQNHIVLKTMNGDELGTLLYAKSYDAETKQLSMIT 180

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SA 233
           V              + +   + Q  ++ +G ++  S  +     MKFK  +L  +    
Sbjct: 181 VQQFGEGGKLQQVENADTAIWNGQYWVMQNGIIYDLSAGNGVERTMKFKEQSLPIKSAPK 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +      K  +  +  L +                  E ++R T  L   +F L+     
Sbjct: 241 DIQQDQRKPEELTIKELRHQIRAYKAAYT-NANKLEMEMYQRFTIPLASFVFALVGAPLG 299

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLL 352
                 +QR      F    +   +++G       + +      +L   +   +  I  L
Sbjct: 300 L----QKQRSSSSIGFGISILIIFIYYGVMTFAGALGKGGALPTVLAALIPDTLGIIAGL 355

Query: 353 MIKKKYTK 360
            +  + +K
Sbjct: 356 YLNWRVSK 363


>gi|282850060|ref|ZP_06259442.1| YjgP/YjgQ family [Veillonella parvula ATCC 17745]
 gi|282580249|gb|EFB85650.1| YjgP/YjgQ family [Veillonella parvula ATCC 17745]
          Length = 363

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 122/368 (33%), Gaps = 13/368 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        I      + +    ++     L ++++     +P+
Sbjct: 1   MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMQAFVLALPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + +    + ++  +E++++   G S + L  PV  +A+++SI       
Sbjct: 61  IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNE 120

Query: 120 IIEPKCRSTIK----QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
            + P+     +    +   K     T +++        +    +    YN       +  
Sbjct: 121 FVVPRTNHMYQTIVREQIMKNASPQTQNHIVLKTMNGDELGTLMYAKSYNAETKQLSMIT 180

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SA 233
           V              + +   + Q  ++ +G ++  S  +     MKFK  +L  +    
Sbjct: 181 VQQFGEGGKLQQVENADTAIWNGQYWVMQNGIIYDLSAGNGVERTMKFKEQSLPIKSAPK 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +      K  +  +  L +                  E ++R T  L   +F L+     
Sbjct: 241 DIQQDQRKPEELTIKELRHQIRAYKAAYT-NANKLEMEMYQRFTIPLASFVFALVGAPLG 299

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLL 352
                 +QR      F    +   +++G       + +      +L   +   +  I  L
Sbjct: 300 L----QKQRSSSSIGFGISILIIFIYYGVMTFAGALGKGGALPTVLAALIPDTLGIIAGL 355

Query: 353 MIKKKYTK 360
            +  + +K
Sbjct: 356 YLNWRVSK 363


>gi|77361338|ref|YP_340913.1| hypothetical protein PSHAa2422 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876249|emb|CAI87471.1| putative membrane protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 370

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 131/365 (35%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   + +S +   L ++ I    +++  +   S  +    ++L +    +P +  
Sbjct: 2   LIFRYLTAEVLKSQVAVFLTLMTIFLSQKLVSILGDASEGSIPAKLVLSMIALKLPQLAS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +  ++E+ ++   G S   +++  L  ++ L+I        + 
Sbjct: 62  LILPLSIFLGIILAYSRIYADSEMTVLKACGVSEWYVVRVTLISSVGLAILAAALTMHVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       QL  +A+     S L    F +  ++  +       N   +   +  ++   
Sbjct: 122 PWASEQEYQLKEQAKADAGLSALRAGRFQQTGNEKAVVFIHNIENGGKELNKVFVAQLPD 181

Query: 183 THKIYYAQ--------SGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           + K   A+                Q ++L+DG+ +    ++  +++ +F  Y++Q     
Sbjct: 182 SEKDNLARLVYAEQGVVIEAQNGEQQLVLSDGKRYETDGLTPALNLTEFDGYSVQIREQE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K      + LL                  +++  R+   L   +  L+++    
Sbjct: 242 IEHQRRKLEAIPTNQLLAL----------NTPEATAQWQWRIAIPLSIPLLTLLAVPL-- 289

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +  ++S+  G F   +     +   + P  I + ++ L  +    LL
Sbjct: 290 -SVVNPRQGKFAKLVPAISLYLGYFILLNAAKFAVEDGKIPPSIGLWWIHLSALFIGGLL 348

Query: 353 MIKKK 357
           +IK +
Sbjct: 349 IIKGR 353


>gi|78188283|ref|YP_378621.1| hypothetical protein Cag_0302 [Chlorobium chlorochromatii CaD3]
 gi|78170482|gb|ABB27578.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
          Length = 359

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 121/360 (33%), Gaps = 5/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI +   ++FL + L  V +  +I +++++        S   + +     IP++
Sbjct: 1   MKILERYIFQQFIKAFLFTALVFVSLFIIINMIEKLGNFMDHHVSALEIARYYLLSIPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    + +  V   +    EL  I + G S   L+ P  + A+LL +F F +   
Sbjct: 61  FLVTSPVSALLASILVAGKLATQNELPAIRSAGVSMRQLLTPFAWGALLLFLFNFFNAGW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P   S  +                 NL      + +I I  +NP N       I    
Sbjct: 121 LAPTTYSHNRTFEQLYLGKNAGDQETRNLHLLDSGNRFISIGAFNPINESLNNVSIERLS 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                    A S   +   +   +        S   +  +     +  L         + 
Sbjct: 181 GATMISRIDADSMHYNRRTKRWTMWRVTERYFSNGYQSFTTKPTATIRLALRPKALHEMR 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L+ ++  L                 LE    +FH ++      +I  LI +  A   A  
Sbjct: 241 LQPDEITLPRHYQFLREKEEAGFSGLERSAVKFHNKIAMPFASLIITLIGVPLA---ARK 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
           ++      I I+L I F ++ G    I          PI+  +L  +  + +  +  K +
Sbjct: 298 KRGGIAAEIAITLFIGF-LYLGIQRTIAIAGYQGVLPPIVAAWLPNLLFLVVGWVLYKKS 356


>gi|302392908|ref|YP_003828728.1| permease [Acetohalobium arabaticum DSM 5501]
 gi|302204985|gb|ADL13663.1| permease YjgP/YjgQ family protein [Acetohalobium arabaticum DSM
           5501]
          Length = 364

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/366 (15%), Positives = 123/366 (33%), Gaps = 15/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPT 59
           MK  + Y+L  +    L        I      + +  +L+     S     ++    +P 
Sbjct: 1   MKIIDRYLLTELLSPLLFGIFAFTSIFVGTDILFELADLMIEWGVSAVTAGQLFILSLPE 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+ +  P    + T      ++ ++E++ +   G S I LI PVL +A+LLS    ++  
Sbjct: 61  VIVLTFPMSMLLATLLSFGRLSGDSEVVALKAGGVSFIRLIIPVLIVALLLSGLTILANE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL-----QGIF 174
            I P+ +   +++    +        ++NL     D    KI                  
Sbjct: 121 TIVPQSKDAYRRIVWNIKHQEKMPTTQKNLRIAPLDKKTGKIDYIFYAYHFDGSDLTMEE 180

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM--KFKSYTLQTES 232
           +          +   ++       +     DG ++  +   K  ++    +    L  E 
Sbjct: 181 VSLQDYQNGKLVQVIEAKRARWTDERWQFIDGTIYNVNSKDKVPTMEFETYTVKKLNREP 240

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              S      ++ ++  L N + N      + + + +  +++R        IF LI    
Sbjct: 241 KEISRAQKDPDEMSIEEL-NRHINLKEEEGKDVASLKVLYYQRYAIPFSCFIFALIGAPL 299

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIF 350
             +     +      + +S+ I F +++    I   + Q     P +  +L       + 
Sbjct: 300 GLQPN---RSGASIGLGLSIVIIF-IYYTLMTIGSTLGQTGTLPPAVGAWLQNIIFGLVG 355

Query: 351 LLMIKK 356
             +I K
Sbjct: 356 TGLIIK 361


>gi|159028498|emb|CAO87305.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 389

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/365 (11%), Positives = 120/365 (32%), Gaps = 21/365 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + YI   +   FL        +   +  +   +  ++ S     + LKI    +P  
Sbjct: 17  TILDRYIFVELLLPFLFGMGLFTSLGVAIGTLFDLVRRITESGLPFTLALKILLLKMPEF 76

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +      + +  ++EL+   + G S   LI P + L+++++   +I  + 
Sbjct: 77  IVLAFPMSILLAALMAYSRLASDSELIAFKSIGISVYRLIIPAIVLSLIVTGLTYIFNDY 136

Query: 121 IEPKCRSTIKQLS-------------AKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN 167
           + P                                     +          +  ++    
Sbjct: 137 VAPAASYEANATMTKALRPNRKSFIEDNIIYPEYGKVRPPDGGEAQTVLRRLFYAERFNG 196

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             + G+ I+D    + ++I  +++ S ++++      +G ++   P     +I++F+   
Sbjct: 197 QEMLGLTILDRTQPEVNQIITSETASWNIEKNIWDFYNGTIYLIDPNGSYRNIVRFQHQQ 256

Query: 228 LQT--ESANSSTIVLKANDQNLSFLLNP-NPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
           L       + +      ++  L            +  P      + +  ++++     ++
Sbjct: 257 LALPRTPLDLAFRGRDGSEMTLRQAREYLEILQLSGNPTKTRKLQVQIEQKISLPFVCLV 316

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           FG+I      +        K     I + + F  ++  S++   +       P++  +L 
Sbjct: 317 FGMIGAALGLRPQNS---NKATSFGICIVLIFS-YYLLSFVTSSLGIGGVLTPLMAAWLP 372

Query: 345 CISSI 349
            I  +
Sbjct: 373 NILGL 377


>gi|326405101|ref|YP_004285183.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
 gi|325051963|dbj|BAJ82301.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
          Length = 374

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 138/352 (39%), Gaps = 7/352 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + Y+ R +     +S L +V + W+ Q L+ I L+     S  + L ++G L+P+ +
Sbjct: 8   TRLDRYVFRQLLIGLAVSTLGLVALVWLTQSLRFIQLIIQHGLSPVVFLHLTGLLVPSFV 67

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P    +    V   +  + EL ++  +G S   + +P L LA+L  +  +     +
Sbjct: 68  AVILPITCFIVILFVYARLAADRELTVMRASGMSDAAIARPALALAMLTMLACWGLNVWL 127

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   +      +  +  +    LE  +F  +   + + + + + +  L GI I D+R  
Sbjct: 128 VPSTLARFTHFESIIRNQVAAFLLEPGVFTPIPGHITVYVQRRDHDQVLHGIVIQDARQK 187

Query: 182 QTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                  A+SG +    D   ++L DG   +  P +  ++I+ F+   +        T  
Sbjct: 188 GEPATILARSGRLIDGPDGPEVLLLDGSREQVDPKTGRLNILSFRRNLISLAKPTGVTRK 247

Query: 240 --LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K ++  ++ L +    +     +      +     +      + + +I++++  +  
Sbjct: 248 LAPKTSEATMTQLFHAGAAHVPPPVQRRWREEAWRR--IASPFAVLSYAVIALLSVLRSP 305

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
             R++     +  ++ I  G+        +   +    IP+++      + +
Sbjct: 306 F-RRQGGAAALVAAVFIVMGLVALELGTENLAARQNGLIPLIFAVTLGPALV 356


>gi|300114326|ref|YP_003760901.1| permease YjgP/YjgQ family protein [Nitrosococcus watsonii C-113]
 gi|299540263|gb|ADJ28580.1| permease YjgP/YjgQ family protein [Nitrosococcus watsonii C-113]
          Length = 354

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/355 (11%), Positives = 106/355 (29%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI + +    L+    ++ +   +Q +  +  V      +   L+ + Y IP  
Sbjct: 1   MKILDRYIAKAVISYTLLVLFILIALYTFLQFITELEDVGEGNYGVMGALRYTTYSIPQH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + +   L  +   +EL+ +   G S   +    L   ++  I   +   +
Sbjct: 61  IYDLLPVAALLGSVLGLGYLAGQSELVAMRAAGFSVGRITLSALATGMIFVIATVLMGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +    +L + A+        E+  + R  ++                        
Sbjct: 121 VAPPAQQAANKLRSLAKTGHLSEDGEQGFWSRNGNNFNHVGRVLPNGQYEYIEIFEFDNQ 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   +  A       D     L D      S        ++   +           +++
Sbjct: 181 RRLRIVTQATRAIYHKDG--WHLYDVTQRLISTEGIITRRLEEALWESGLSPEMLDVVMV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L            +  E Y+  F  ++      +I   ++I          
Sbjct: 239 DPQQLSAWGLYR-YIGYLQQSKQAAEQYQQAFWSKIVAPFSTLIMMFLAIPFIFGPLRSV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +   +   + I F +F      +  +     ++   +  L C++   +++ +
Sbjct: 298 SVGQRILVGALVGIGFFLFNRLFNQLGLVFDFSPWLGAAFPSLLCLALGVVMLRR 352


>gi|77361337|ref|YP_340912.1| hypothetical protein PSHAa2421 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876248|emb|CAI87470.1| putative membrane protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 355

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 132/356 (37%), Gaps = 3/356 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+ R I ++   + L +V I+ +I+ + ++  V   +  L   +  + Y IP  
Sbjct: 2   MKTLDWYLGRSILQTTGFALLVLVGISTLIKFIDQLKSVGRGSYDLMTAMLYTLYTIPGD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +     L ++  N+EL+++   G SR+ +I  V+  A+ +++ +      
Sbjct: 62  LVVFFPMAALIGGLTGLGALASNSELVVMHAAGMSRLQIISSVMKTAVFMALCMMALGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+ +   K++  +A +     +  +   +  D + +I I   + N  L G+ +     
Sbjct: 122 GVPEAQLQAKEMRNQA-IHGGDVFNAQKGVWAKDGNNFINIEDVDQNGKLNGVHMYHFDQ 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           + +         ++  +    +L      + S        +  + Y  Q  +     + +
Sbjct: 181 SLSLTQITKAKDALSREN-GWLLRGVNKVKISDELITTEQVPEEFYPSQLTAEKLGVVSV 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    + + L     +      +   TY     ++L Q +   +  L+++          
Sbjct: 240 KPESLSFTGL-WSYLDYLKQNDQDTSTYELALWRKLMQPISIAVMLLVALSFIFGPLRTV 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  + +   I F +       +  + Q P +I  +   +        LM K+
Sbjct: 299 TMGARIIMGVVTGIVFHLTNEIFGPVVMVYQIPAFIGAVVPSIIFTGFAAYLMNKR 354


>gi|108761666|ref|YP_631128.1| hypothetical protein MXAN_2917 [Myxococcus xanthus DK 1622]
 gi|108465546|gb|ABF90731.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 370

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 134/366 (36%), Gaps = 10/366 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+L  +     +   F+  + +V+Q L+  +++  S+ +L  + ++  YL P  
Sbjct: 1   MNRLSRYLLGELLVPLGVWVAFMFLLLFVMQFLRGTDVLLGSSVTLVDMARLLAYLAPHF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M  P  F +     L  +  + EL+ +   G   + L+   + +A+ LS+ + +  + 
Sbjct: 61  LMMALPIAFLLAILLGLGRLGEDRELVALQALGIGPVRLLAAPMGIAVALSVLMLVITST 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            +P   + +K L ++         ++  +F+    +L +   + + +     + + D R+
Sbjct: 121 AQPWGLTGLKVLVSEVIRKNAVGDVKSGVFYEDLSNLTLYAEQVSADGKWTNVLLHDDRE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAII----LNDGEVHRKSP-ISKDISIMKFKSYTLQT----E 231
             +  +  AQ G +       +    L  GEVHR +   +++ SI++F    +       
Sbjct: 181 ANSPLLVLAQRGQVGTSTSGEVLRFALEAGEVHRSAGRETEEYSIIRFDQAEISVGVGAS 240

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               S       +     L+         + E    YR   H RL   L P+ F L+   
Sbjct: 241 MGKRSRFSYSREELTPGELMEA-AREAEAQGEDARMYRMALHSRLGNALAPIAFALLGTP 299

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            A  R    +            + + +   F  +  K +        +   +F    +  
Sbjct: 300 LAMGRRQSGRAWGYLLTLGGYVLYYLLSRVFEQMGQKGQLPAGLAGQMANLVFVAVGLVA 359

Query: 352 LMIKKK 357
           L    +
Sbjct: 360 LYRVSR 365


>gi|300866498|ref|ZP_07111188.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300335455|emb|CBN56348.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 369

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 138/358 (38%), Gaps = 19/358 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            + Y+ + +   FL        +   V  + + +  V+ S    +  ++I    +P  + 
Sbjct: 1   MDWYLTKELIGPFLFGVGLFSSVGVTVGAVFELVRRVTESGLPFSTAIQIFLLKMPYFIV 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    + +    + M+ ++E++ + + G +   L+ P + L++ ++   F    +I 
Sbjct: 61  LAFPMSMLLASLMAYSRMSSDSEIVALRSCGINVYRLVVPAVILSLAVTGMTFAMNELIV 120

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-----------YIKISKYNPNNTLQ 171
           P           +A       + E+N+F+    ++            +  ++      ++
Sbjct: 121 PAANYQATVTLDRALKREKPLFQEKNIFYPEFRNVDKGNGEESVLTRLFYAEQFDGKQMK 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT- 230
           G+ I+D    + ++I  ++S   +  + +    +G V+  +P     +I++F+   LQ  
Sbjct: 181 GLTILDRSQPELNQIISSESAIWNPAQNSWDFFNGTVYIVAPDGSYRNIVRFEHQQLQLP 240

Query: 231 -ESANSSTIVLKANDQNLSFLLNP-NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
               + +       + N++  ++  N    +   + +   +    ++       ++FGL+
Sbjct: 241 RTPLDLAAKARDYGEMNIAQAIDYLNLIRSSGDEQKIRKLKVRIQEKYALPFVCIVFGLV 300

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
                 K     +  +     IS+ + F  ++ FS+I   +       P++  +L  I
Sbjct: 301 GAALGTKPQ---RTGRATSFGISVIVIFT-YYVFSFITSSMGLKAILTPVMAAWLPMI 354


>gi|163759136|ref|ZP_02166222.1| hypothetical protein HPDFL43_05210 [Hoeflea phototrophica DFL-43]
 gi|162283540|gb|EDQ33825.1| hypothetical protein HPDFL43_05210 [Hoeflea phototrophica DFL-43]
          Length = 385

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 92/357 (25%), Positives = 172/357 (48%), Gaps = 12/357 (3%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
              S      +    Q+L R+++++++ ++    + ++  +IP+V+ +V PF   +  + 
Sbjct: 5   TFWSLTAATLLVMTTQVLIRVDVLTTTGQAFGAFMLLAATIIPSVISVVAPFALLIGVSQ 64

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
           VL+ MN ++EL++I+  G    T+++PV+ L++ LSI + +  N +EP     +  + A+
Sbjct: 65  VLSGMNSDSELVVIEAAGARPATVLRPVMALSVALSIMVLLVANFVEPWSNRKLYDVLAQ 124

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSID 195
           AQ  L    +    F +L+D LY+++++  P   L GIF+ D+R   T  IYYA+SG I 
Sbjct: 125 AQSDLFSVAVRSGTFMKLEDGLYVQVNEKLPGGALSGIFLSDTRTDGTEAIYYAKSGVIQ 184

Query: 196 LDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTIVLKANDQNLSFLL 251
            +    I  L DGE+ ++   +  ISI+ F SY L   +          +  +Q+  +LL
Sbjct: 185 PEGDTNILLLLDGELQQRDTSNDQISIVTFSSYALDMAAFVPAGQNAARRPKEQSTGYLL 244

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR---QRKKIHPI 308
            P P++  Y        + E  +R + WL+P+ FGLI+     K    R    +      
Sbjct: 245 AP-PSDDYYAGNAPYIIKEELVQRFSTWLYPLAFGLIAFAFLGKARSNRHEQFQNGALVA 303

Query: 309 FISLSI-SFGVFWGFSYIIHKIEQNP-YYIPILYLFLFCISSIFL--LMIKKKYTKI 361
            I+L    FG +           +   Y +P + + LF   ++    L I K + ++
Sbjct: 304 GIALGARGFGFYSVEEAGASSAMEVLSYLVPGMLIVLFGALAVTGHTLTIPKAWARL 360


>gi|269792897|ref|YP_003317801.1| permease YjgP/YjgQ family protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100532|gb|ACZ19519.1| permease YjgP/YjgQ family protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 356

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 114/357 (31%), Gaps = 12/357 (3%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           IL  +   F         +     +L +  +LV     SL +++++  Y +P V+    P
Sbjct: 2   ILMELLGPFAFGVAAFTVLMVAGSLLFRIADLVIQRGVSLGVVVRLFLYYLPGVVVTTIP 61

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +        ++ ++E++ +   G     +++P++  + L S+  F+    + P   
Sbjct: 62  MGSLLGALMGFGKLSSHSEIVALKACGVPFRRMVRPLVVASALASVVTFVLNETVVPLSE 121

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVDSRDTQT 183
              + + A   +       +E +F R +       +         T +   ++       
Sbjct: 122 RAARNVLAYEIMRERPPEFKERMFLREEGSSGLRRVIYMDRIRPRTGEMEGVLVQEFEGG 181

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLK 241
                  +           + +G+    +P      +  F   +L      A        
Sbjct: 182 RLSRLTSARRAVWRDGKWTMEEGKTFEVAPDGGVKFLYSFARESLRLDLSPARVEAQSTD 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            +  ++  +          +       R  FH RL      ++  L+   A  +    R 
Sbjct: 242 PSQMSVFQM-AEQIGLMERQGSDATKLRVMFHLRLAVPWASLVLALVGASAGVRP--QRS 298

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIKK 356
                 + +S+ I F  +   S+    + +  Y  P++  ++         L M+++
Sbjct: 299 GGAGVGLGLSVVIVFLYYVVLSF-CQSLGEASYLPPVVAAWVPNLVFGVAGLFMVRR 354


>gi|33865647|ref|NP_897206.1| permease [Synechococcus sp. WH 8102]
 gi|33632817|emb|CAE07628.1| possible permease [Synechococcus sp. WH 8102]
          Length = 385

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/376 (11%), Positives = 122/376 (32%), Gaps = 22/376 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + +++  I    L +      +   I  + + +  +          L++    +P  L
Sbjct: 14  LLDRWLVGEILAPLLFAVAAFTVVGLSIGVMFELVRRLVEDGLPAWTALQVMLLSLPRFL 73

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P      T    + +  N+EL  + + G S + L+ P L L+ LL+    +  ++I
Sbjct: 74  VLSFPMATLFATLLAYSKLTANSELTALRSVGVSTVRLVVPALVLSALLTGMTLLFNDVI 133

Query: 122 EPKCRST-------------IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN 168
            P+  +                +       +      E            +  S+     
Sbjct: 134 VPQANTQAEVTLQKALGRALATEKGKDIIYSRFGRVREPGSERSGRGLKQLFYSRRFDKG 193

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            +  + ++D       ++  A+    +         DG++   + ++   + + F  Y  
Sbjct: 194 EMVDVTVLDFSRAGFRQMLVAERALWNEGEAKWEFRDGQILTLN-LNGSTTRVDFDRYLY 252

Query: 229 QTESANSST--IVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLFPVIF 285
              S       +   AN+  ++  +            +     +    ++ T  +  V+F
Sbjct: 253 PLSSGPLKVARLPDDANNMTIAEAIEAERVEAEAGNLKAARKLQVRIQEKFTFPMACVVF 312

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           GLI      +     +  +     IS+ +  G ++  S+    +        +L  +L  
Sbjct: 313 GLIGSSLGSRPGS--RTSRSQGFGISILLILG-YYALSFSFSSLGVKGVLPALLAAWLPV 369

Query: 346 ISSIFL-LMIKKKYTK 360
           + S+    ++ ++ ++
Sbjct: 370 LISLGAGTLLLRQASR 385


>gi|323140935|ref|ZP_08075848.1| permease, YjgP/YjgQ family [Phascolarctobacterium sp. YIT 12067]
 gi|322414673|gb|EFY05479.1| permease, YjgP/YjgQ family [Phascolarctobacterium sp. YIT 12067]
          Length = 363

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/364 (12%), Positives = 115/364 (31%), Gaps = 12/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINL-VSSSTESLNILLKISGYLIPT 59
           ++  + Y+L+ +   F+        I     +L +I   ++     L  + ++  Y +P 
Sbjct: 3   LRLLDRYVLKELLYPFVFGIAAFSSIFIASTMLFKITQYMTKYGAPLETVARLFMYNLPE 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+    P    +        ++ ++E+  +   G S   ++ PVL +   +S+F  +   
Sbjct: 63  VINYTFPMSMLLAALMAFGKLSGSSEITAMKAGGVSYYRIVAPVLVVGFFVSMFSMVWAE 122

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI--SKYNPNNTLQGIFIVD 177
            + P  ++    +  +     T    + ++  +       ++  +        +   I  
Sbjct: 123 KVVPTSKAKASIILNEEIRHNTRPTTQNHIIIKTISGDTQRVTYANKFDEKLGKMTDITI 182

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +        +     +  +  + DG V          S  KFK   +    +    
Sbjct: 183 EEFNKGKIARIQTAKEGYWENGSWRIVDGNVFALDDKDGVQSSAKFKEQIIPLNFSPKQI 242

Query: 238 IVLK--ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
              +    +  +  L     +    +         E   R+   L    F +I       
Sbjct: 243 SWEQKEPEEMTIREL-REYISMLEEQHTSAARQWCEIFMRINIPLASFFFAMIGACL--- 298

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLM 353
               ++      + IS+ + F  +   ++    + +     P+L   L       + + +
Sbjct: 299 GTQKQRTSSSIGLGISIIVIFIYYAIMTFTTG-LGKGGAMPPLLACALPNILCLGVGVYL 357

Query: 354 IKKK 357
           +KKK
Sbjct: 358 MKKK 361


>gi|315125733|ref|YP_004067736.1| hypothetical protein PSM_A0635 [Pseudoalteromonas sp. SM9913]
 gi|315014247|gb|ADT67585.1| hypothetical protein PSM_A0635 [Pseudoalteromonas sp. SM9913]
          Length = 371

 Score =  123 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/367 (12%), Positives = 130/367 (35%), Gaps = 23/367 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+   + +S +   L ++ I    + +  +   S  +    ++  +    +P +
Sbjct: 1   MLLIFRYLTTEVLKSQVAVFLTLMTIFLSQKFVVILGDASEGSIPAKLVFAMIALKLPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  ++E+ ++   G S   +++  L  +++L++   +    
Sbjct: 61  ASLILPLSLFLGIILAYSRIYADSEMTVLKACGVSEWYVVRITLISSVILALLAAVLTLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P       QL  +A+     S L    F +  ++  +       N   +   +  ++ 
Sbjct: 121 VAPWASEQEYQLKEQAKADAGLSALRAGRFQQTGNEKAVVFIHNIENGGKELNKVFVAQL 180

Query: 181 TQTHKIYYAQ--------SGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
             + K   A+                Q ++L DG+ +     +  +++ +F  Y++Q   
Sbjct: 181 PDSEKGDLARLVYAEQGVVIEAQSGEQQLVLTDGKRYETDGEAPSLNLTEFDGYSVQIRE 240

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                   K        L++                 +++  RL   L   +  L+++  
Sbjct: 241 QEIEHQRRKLEAVPTRELMS----------INTPEAIAQWQWRLAIPLSIPLLTLLAVPL 290

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIF 350
                +  ++ K   +  ++S+  G F   +     +   + P  I + ++ L  +    
Sbjct: 291 ---SVVNPRQGKFAKLVPAISLYLGYFILLNAAKFAVEDGKIPPSIGLWWIHLSALFIGS 347

Query: 351 LLMIKKK 357
           LL+I+ +
Sbjct: 348 LLIIRGR 354


>gi|15644481|ref|NP_229533.1| hypothetical protein TM1735 [Thermotoga maritima MSB8]
 gi|4982312|gb|AAD36800.1|AE001812_10 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 1074

 Score =  123 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 123/356 (34%), Gaps = 6/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K    Y+L+     FL+     +    +  + Q  +L+      +  L  +  Y +P  
Sbjct: 14  LKVLIKYLLKLSVVPFLIGLGGFIVFVSLEILYQLSDLIVRHRVGIEKLFLMLYYYLPYF 73

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +      + ++   EL+ I   G S+  LI P L L  LLSI +F   + 
Sbjct: 74  VAMGVPVGVLLAIFWTFSRLSEERELMAIQVHGISQKNLIVPFLILGALLSIAVFFLSDQ 133

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+ +S  ++  +K  L     ++ EN+  ++ DD Y  + KY+   +     ++    
Sbjct: 134 IVPEYQSKAEEAMSKYVLKKPEVFVVENVISKIGDDQYFYVEKYDERTSTMWNVVIFRYG 193

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--TI 238
            +   +    +  +        L DG  +           + F    L           +
Sbjct: 194 HEETIV---TAKRVQKKGNDWYLFDGNYYTVDKDGFLKLDVHFSEMKLDITEDIEKLLRV 250

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                +     L            +    +  E H R    L P++  L+ +  +    L
Sbjct: 251 GKTPKEMTGKELKEKIEFFKKVGVK-PSPWVVELHSRYANSLTPIVIVLVGVPLSLLFQL 309

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +   +   F+ + +  G     S +  +   NP   P +   +F I    L ++
Sbjct: 310 RSKSWGVIFTFVLVVLYQGSGAWLSAMGKENLLNPVLAPWIPNIVFTIVGTLLFIL 365


>gi|310816137|ref|YP_003964101.1| putative permease, YjgP/YjgQ family [Ketogulonicigenium vulgare
           Y25]
 gi|308754872|gb|ADO42801.1| putative permease, YjgP/YjgQ family [Ketogulonicigenium vulgare
           Y25]
          Length = 379

 Score =  123 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 64/356 (17%), Positives = 136/356 (38%), Gaps = 3/356 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L  +   F    L ++ + WV + +   + + S  + + + ++ +   +P +
Sbjct: 1   MGRFDRYLLSQLMTLFGFFSLVLIMVYWVNRAVALFDQLISDGQGMWVFVEFTALSLPAI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P    + +  V   ++  +EL+++ +TG S   +++ V+   ++  + + I  ++
Sbjct: 61  IKLVLPLSAFVASVYVANRLSGESELVVVQSTGFSPARVMRAVMVFGLIAVVMVQILAHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +    A+     T   L    F      + + I    P   LQ +F+ DSR 
Sbjct: 121 LVPLSNQRLNIRQAEVTQTATARILRAGEFMTPIAGVTLYIRSITPEGELQDVFLSDSRA 180

Query: 181 TQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +    IY A    I        +++ DG +   S  ++ +S   F  +     S   S  
Sbjct: 181 SLADTIYTASRAYIVRTERAPQLVMVDGSIQNLSHQTERMSFTTFSDFAYDLSSILPSVD 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               + +N + L      +        +  R+E H RL++ L  +I  L+          
Sbjct: 241 PAALSLRNATTLQLLLARDEMTLLFGADNIRTEIHDRLSEPLLGLIGPLLGFATLLIGGF 300

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            R       I  ++ +   V    S     I ++      LYL       I  L++
Sbjct: 301 SRFG-LSRQIAAAVGLVILVKMIESTATGAIRRDAGLWWTLYLPAVFGLGITGLLL 355


>gi|326799922|ref|YP_004317741.1| permease YjgP/YjgQ family protein [Sphingobacterium sp. 21]
 gi|326550686|gb|ADZ79071.1| permease YjgP/YjgQ family protein [Sphingobacterium sp. 21]
          Length = 358

 Score =  123 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 43/361 (11%), Positives = 104/361 (28%), Gaps = 4/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           M   + YI++    +F+ +      +A +  I +R++    +   L+ I+ +     IP 
Sbjct: 1   MNIIDKYIIKKYLGTFVFTMAIFTVVAVIFDISERMDDFLKNHAPLSKIVFEYYAGFIPF 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L  ++P    +        M   TE++ I N G S    ++P    A ++ +   I   
Sbjct: 61  YLNFLSPLINFIAVIFFTAKMADQTEIVPILNGGMSFRRFLRPYFIAASIICLVTLIFNI 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I P+               +  +           +      +  N         +   +
Sbjct: 121 YIIPRTNKLKIGFENIYVKPIDNNSKSSTHMQIDKNSFVYIDNFDNDRKVGYNFILETFK 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +  +   A   + D  +    + +  +   + +++ +     K  TL     +     
Sbjct: 181 GQELQEKLIADRITWDSVKNNWKIENYTIRIVNGLNEKMIKGTSKDTTLDMSPRDFEIRD 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                     L              +   + E +KR        I  L+ +      +  
Sbjct: 241 NVFMAMTTQELNENIEKEKIRGTGRMTDLKLEKYKRFIYPFSAYILTLMGVSL---SSKK 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
            +      + + +++SF       +      +      +       I     L +  K  
Sbjct: 298 VRGGIGLSLGVGIALSFTYILFIQFANMFSLKGGLPPLLAAFIPSLIFLGVGLYLLYKAP 357

Query: 360 K 360
           K
Sbjct: 358 K 358


>gi|303230241|ref|ZP_07317009.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-134-V-Col7a]
 gi|303231004|ref|ZP_07317747.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-049-V-Sch6]
 gi|302514386|gb|EFL56385.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-049-V-Sch6]
 gi|302515167|gb|EFL57141.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-134-V-Col7a]
          Length = 363

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 47/368 (12%), Positives = 122/368 (33%), Gaps = 13/368 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        I      + +    ++     L +++K     +P+
Sbjct: 1   MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMKAFFLAMPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + +    + ++  +E++++   G S + L  PV  LA+L+SI       
Sbjct: 61  IILLTFPMSVLLGSLMAFSRLSSTSEIVVMRAGGLSFLRLAMPVYILALLISIGAVAFNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENL----FFRLDDDLYIKISKYNPNNTLQGIFI 175
            + P+  +  + +  +  +       + ++        +    +    Y+  +    +  
Sbjct: 121 FVVPRTNNMYQTIVREEIMKNASPQTQNHIVLKSMNGDNLSTLMYAKHYDSESKKLSMIT 180

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESA 233
           V   + +        + + + + Q  +++ G ++  S        MKFK   L       
Sbjct: 181 VQQFNDKGELQQVENAENAEWNGQVWVMHSGIIYDVSAGEGVERTMKFKEQVLPIKSSPN 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                  K  +  +  L +                  E ++R T  L   +F L+     
Sbjct: 241 EVQQDQRKPEELTIKELRHQIKAYKAAYT-NSNKLEMEMYQRFTIPLASFVFALVGAPLG 299

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLL 352
                 +QR      F    +   +++G       + +       +   +   +  I  L
Sbjct: 300 L----QKQRSSSSIGFGISILIIFIYYGVMTFAGALGKGGALPTWMAAMIPDTLGIIAGL 355

Query: 353 MIKKKYTK 360
            +  + ++
Sbjct: 356 YLNWRVSR 363


>gi|114562103|ref|YP_749616.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
           400]
 gi|114333396|gb|ABI70778.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
           400]
          Length = 370

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 130/365 (35%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++  + ++     L ++ I    Q ++ +   S      ++++ + G  +P +  
Sbjct: 2   IVFRYLISEVLKAQFAVLLVLLTIFISQQFVRVLADASDGEFPASLVMTLLGLNLPQLTV 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P  F +        M    E++++   G S   + +  L LA    +F       + 
Sbjct: 62  LVLPLSFFLAILLAHGRMYAENEMVVLHGVGVSEWYVTRVTLLLAFANLLFTAYLSVYVG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-----D 177
           P       Q+  KAQ     + L +  F    +   +   +    +       V      
Sbjct: 122 PWAEERQNQVLEKAQSEAGLAALTQGRFQASPNGRAVLFVEKINKDNTLDKVFVAQLPDP 181

Query: 178 SRDTQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             +     I  A  G +  D    Q + L  G  ++ SP S ++ +++F  Y ++ +   
Sbjct: 182 EDENGLTNIVVANKGRVIEDNIGSQQLQLEKGFRYQGSPKSLELQVIEFGGYKMEIKEQE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +   +  LL+                 +EF  RL   +   +  LI++  A 
Sbjct: 242 VDERRRKLSAMPIDELLDT----------PGPEAAAEFQWRLAIPIAIPLLTLIAVPLA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +  ++ +  G F         +  E  P Y+ + ++  F +    LL
Sbjct: 291 --RVNVRQGKFAKMGPAILLYLGYFGLMIAGRKALQDEVVPQYLGMWWIHGFALLLGLLL 348

Query: 353 MIKKK 357
           +IK++
Sbjct: 349 LIKER 353


>gi|299138457|ref|ZP_07031636.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX8]
 gi|298599703|gb|EFI55862.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX8]
          Length = 785

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 55/371 (14%), Positives = 138/371 (37%), Gaps = 15/371 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ F  YILR +    L+  +   FI ++  +L  + L      S   +L++ GYL+P  
Sbjct: 1   MRIFTRYILREVVGYALLGGVLFTFILFMRYLLALMELAVHGAASFADILRLIGYLLPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +     L+ +  ++E+  +  +G   ++ ++ V  +A+L      ++   
Sbjct: 61  LTLTIPMAVLIGILLGLSRLAADSEITAMRASGMGVLSFVRIVSIVAVLSWAVGLVNSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN---TLQGIFIVD 177
           + P+  + + Q  A+         ++  +F+    +  + +    P +     + +F+ D
Sbjct: 121 VAPRAAAALLQYEAQGASGEAAIQVQPRVFYEDFKNYVLYVQDVVPGSGAAEWKNVFLAD 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQ-----AIILNDGEVHRKSPISKDISIMK-FKSYTLQT- 230
                T  I  +Q   +           + L+DG  H  +  + +   +  F S  L   
Sbjct: 181 LTQPATPHIITSQEALVTGTPGDPQTLRMQLSDGSRHDIAGNNPNQYDISTFASTELPIQ 240

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                    +   D  +  L         +     + Y  E H+R +     ++  L+ +
Sbjct: 241 TGQQEEDSHISRRDTPIQALSMGELWKFAHGSGDTQPYFIELHRRFSYPAACLVLMLVGV 300

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSI 349
                    ++  K     I+L + F  ++  S++   + +         ++    I  +
Sbjct: 301 PLGLS---SKRGGKGTGFAITLVLVFA-YYILSFVGSALARQGKLSAFAGVWGANIIFGV 356

Query: 350 FLLMIKKKYTK 360
             +++ ++ ++
Sbjct: 357 AGVLLLQQMSR 367



 Score =  120 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 118/369 (31%), Gaps = 22/369 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y++    R+F +    +V +  +    + I  +      L  + +    LIP +L 
Sbjct: 420 ILDEYVMGSFLRNFGLVLTSLVGLFLIFTFFELIGDIIKYRTPLVTVGEYLLNLIPFILY 479

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            VTP C  +       +++R +EL  +  TG S   +  PVL +A+ LS  LF  +    
Sbjct: 480 NVTPLCSLVAVLITFGALSRTSELTAMKATGVSLYRIATPVLLVALALSAILFAFDETYL 539

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD----------DLYIKISKYNPNNTLQG 172
           P      + L +  +     ++L  +  +                Y              
Sbjct: 540 PAANRKQEALRSVIKGKPAQTFLRADRKWMSGQTLGNKEPTRIFYYQFFDSDKNVFANLT 599

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           +F          +  +A S   D      +  +G     S      S   F   +     
Sbjct: 600 VFEFQPGTFTLTRRIFATSARWDDSVNRWVFENGWQRTFS-GDAISSYQPFTLNSFPEIH 658

Query: 233 ANS---STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                      ++ + + S L +    +           R + ++++   L  ++  +++
Sbjct: 659 EQPGYFKKEDRQSQEMSYSEL-SKYIRDLKQSGFDTTRLRVQLNRKIAYPLMALVMAILA 717

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCI 346
           +  A       +R  +  +   + ++   +W  + I   +        IL  +   +   
Sbjct: 718 VPFALS---TGKRGGLAGMGAGIGVAIS-YWVIAAIFENLGNVNSLPSILAAWSPDILFA 773

Query: 347 SSIFLLMIK 355
                L+++
Sbjct: 774 MVGTYLLLR 782


>gi|163803713|ref|ZP_02197573.1| putative permease [Vibrio sp. AND4]
 gi|159172496|gb|EDP57361.1| putative permease [Vibrio sp. AND4]
          Length = 356

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 122/355 (34%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +     V ++ +I+ ++++  V   T  L   L      IP  +
Sbjct: 3   KLLDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGRGTYDLMHALYFVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +      L+           +  D + +I I K   +            D 
Sbjct: 123 APEAQ-KMARDLRAFALSGGSIVSMRAGVWARDANDFIFIGKVEDDKLYNLNMWRFDEDK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +  K+ +A+      D   ++        ++  +     ++   +         + + +K
Sbjct: 182 KLDKVIFAEEVDYQQDNNWLMRYVQVTDMENENAITKRDIEQMEWHTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +   +      +    Y   F ++L+Q L   +  L+++           
Sbjct: 242 PEELSLSGLYD-YVSYLKATEQDASRYELAFWRKLSQPLSIAVMMLMALSFVFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    SF +   F   +  +   P     L   L  ++    L+ +K
Sbjct: 301 MGARILSGVVAGFSFYISSEFFGPLSLVYGIPPVFGALAPSLVFLAIAIALLRRK 355


>gi|332535155|ref|ZP_08410964.1| putative permease [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035425|gb|EGI71924.1| putative permease [Pseudoalteromonas haloplanktis ANT/505]
          Length = 370

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 49/365 (13%), Positives = 123/365 (33%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   + +S +   L ++ I    +++  +   S  +    ++L +    +P +  
Sbjct: 2   LIFRYLTAEVLKSQVAVFLTLMTIFLSQKLVGILGDASEGSIPAKLVLSMIALKLPQLAS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +  ++E+ ++   G S   +++  L  ++ L+I        I 
Sbjct: 62  LILPLSIFLGIILAYSRIYADSEMTVLKACGVSEWYVVRVTLISSVGLAILAAALTMYIA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQGIFIVDS 178
           P       QL  +A+     S L    F    ++        I K         +  +  
Sbjct: 122 PWASEQEYQLKEQAKADAGLSALRAGRFQETGNEKAVVFIHNIEKGGKELNKVFVAQLPD 181

Query: 179 RDTQTHKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
            +                      Q ++L DG+ +     +  +++ +F  Y++Q     
Sbjct: 182 SEKGNLARLVYAEQGVVVEAVNGEQQLVLTDGKRYETDGTTPALNLTEFDGYSVQIREQE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K      + LL                  +++  RL   L   +  L+++    
Sbjct: 242 IEHQRRKLEAVPTNQLL----------AINTPESIAQWQWRLAIPLSIPLLTLLAVPL-- 289

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +  ++S+  G F   +     +   + P  I + ++ L  +    LL
Sbjct: 290 -SVVNPRQGKFAKLVPAISLYLGYFILLNAAKFAVEDGKIPPSIGLWWIHLSALFIGGLL 348

Query: 353 MIKKK 357
           +IK +
Sbjct: 349 IIKGR 353


>gi|282897128|ref|ZP_06305130.1| permease YjgP/YjgQ [Raphidiopsis brookii D9]
 gi|281197780|gb|EFA72674.1| permease YjgP/YjgQ [Raphidiopsis brookii D9]
          Length = 391

 Score =  122 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 52/368 (14%), Positives = 127/368 (34%), Gaps = 16/368 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTV 60
              + Y+   +   FL        +   I  + + +  V  S   +NI LK+    +P V
Sbjct: 19  SIMDRYLAMQLLPIFLFGVGAFTSVVLAIDSLFELLRKVVESGLPINIALKVFVLKLPYV 78

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + T    + ++ ++EL+ +   G S   ++   + L+ L++   ++    
Sbjct: 79  MVYSFPMSTLLATLMTYSKLSSDSELIALRGCGVSVYRMVLTAVLLSGLVTGMTYVFNEY 138

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI------------KISKYNPNN 168
           I P           +A  +   S+ +EN+++    +                 +      
Sbjct: 139 ISPAANYEASITLEQALKSDQPSFKQENIYYPEYREEKTKDGGTSRLLARLFYADEFDGK 198

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            ++G+ I+D      ++I  ++S   +  +Q     +G ++  +P     +I++F+   L
Sbjct: 199 KMKGLTIIDRSKAGVNQIVVSESAQWNAYKQVWDFYNGTIYLVAPDRSYRNILRFEHQQL 258

Query: 229 QTESANSSTIVL--KANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
           +  S             + N++  L           P+ ++       +++      +IF
Sbjct: 259 KLPSTPLIVAKNSRDYEEMNIAQSLQQLEIEKLAGNPQRIKKLEVRIQQKIAFPFICIIF 318

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           GL+            + +      I + I + +      +      +P+    L      
Sbjct: 319 GLVGSAMGTIPQRTGRGRSFGVSIIVIFIYYLLLSVCGALAQAEILSPFVGAWLPNLCGL 378

Query: 346 ISSIFLLM 353
              I +LM
Sbjct: 379 GMGIVILM 386


>gi|294795168|ref|ZP_06760302.1| putative membrane protein, YjgP/YjgQ family [Veillonella sp.
           3_1_44]
 gi|294453960|gb|EFG22335.1| putative membrane protein, YjgP/YjgQ family [Veillonella sp.
           3_1_44]
          Length = 363

 Score =  122 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 50/368 (13%), Positives = 121/368 (32%), Gaps = 13/368 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        I      + +    ++     L +++K     +P+
Sbjct: 1   MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLVLVMKAFVLALPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + +    + ++  +E++++   G S + L  PV  +A+++SI       
Sbjct: 61  IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNE 120

Query: 120 IIEPKCRSTIK----QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
            + P+  +  +    +   K     T +++        D    +    YN       +  
Sbjct: 121 FVVPRTNNMYQTIVREQIMKNASPQTQNHIVLKTMNGNDLGTLMYAKSYNAETKKLSMIT 180

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SA 233
           V              + +   + Q  ++ +G ++  S        MKFK  +L  +    
Sbjct: 181 VQQFGEGGKLQQVENADTAVWNGQYWVMQNGIIYDISAGDGVERTMKFKEQSLPIKSAPK 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +      K  +  +  L +                  E ++R T  L   +F L+     
Sbjct: 241 DIQQDQRKPEELTIKELRHQIKAYKAAYT-NANKLEMEMYQRFTIPLASFVFALVGAPLG 299

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLL 352
                 +QR      F    +   +++G       + +      +    +   +  I  L
Sbjct: 300 L----QKQRSSSSISFGISILIIFIYYGVMTFAGALGKGGALPTVFAALIPDTLGIIAGL 355

Query: 353 MIKKKYTK 360
            +  + +K
Sbjct: 356 YLNWRVSK 363


>gi|313674434|ref|YP_004052430.1| permease yjgp/yjgq family protein [Marivirga tractuosa DSM 4126]
 gi|312941132|gb|ADR20322.1| permease YjgP/YjgQ family protein [Marivirga tractuosa DSM 4126]
          Length = 357

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 114/357 (31%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F+   L I+ I  VI   ++ +        L  +L   G  IP +
Sbjct: 1   MKILDKYILKKFLSTFVFVVLIILAIVTVIDYTEKNDDFMEHNLGLIDVLPYYGAFIPWI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++TP    +    V + M  +TE++ +  +G S   L+ P +  A L+++  F     
Sbjct: 61  GNLITPITIFIAAVFVTSKMAGHTEIVAMLASGMSFRRLLVPYMIGAGLVALSSFYLNAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T             +    +       +      S  N  +      +    D
Sbjct: 121 VIPDANKTRIAFETAYIKKPFYFTERDIHLKIAPETYAYMESYNNQRDVGYRFTLELIED 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +   A+    D  +    + D  + +   +++  S  K     L     +      
Sbjct: 181 KNLKEKLSARRIEWDSAQSNWKVKDWTLRKFDGLTETYSEGKELDTVLNITPKDFGNTYG 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                 L+ L +          + ++ Y  E + R       +I   I ++ + K+    
Sbjct: 241 LQETLTLTELNDYISLLKERGADNVKIYLIERYIRFMAPFAAIILTFIGVILSSKKKRGG 300

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              +I   F+   I    F     I      NP     L    F I  + L     +
Sbjct: 301 TGFQIALGFVIAFIFIIFFILSKAIAENSTMNPILAVWLPNITFSIVGLILYKFVPR 357


>gi|157363796|ref|YP_001470563.1| permease YjgP/YjgQ family protein [Thermotoga lettingae TMO]
 gi|157314400|gb|ABV33499.1| permease YjgP/YjgQ family protein [Thermotoga lettingae TMO]
          Length = 1102

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 64/355 (18%), Positives = 135/355 (38%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI++      L+     V    V  + Q  +L+      + +LLK+  Y +P  
Sbjct: 1   MGILTKYIIKLSVGPMLIGLAGFVIFVSVEILYQLSDLIVRHRVGIFVLLKVLYYYLPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +    VL+ ++ + EL+ +   G S   LI P L L+I LS   ++  + 
Sbjct: 61  VALGIPVGILLSIFWVLSQLSTDHELMALQVHGISLKVLIVPFLILSIALSFVTYVLSDR 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P        + +K        ++ EN+  ++D+  Y  + KY+  N +    ++   +
Sbjct: 121 IVPLYNQKADSVISKYVYKRPEVFISENVLTKIDESQYFYVKKYDRQNGILEDVVLFRNE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +I  A+   +  ++    + DG+++R          + F    L  +    S + +
Sbjct: 181 PSEEEIITAKK--VVKEKNKWFMYDGKMYRVDKDGVLRFDISFNKVELDLQEDIESIMRV 238

Query: 241 KANDQNL-SFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               +++ S  L    +           +  E H R +  L PVI  LI I  +    L 
Sbjct: 239 GKTPKDMRSEELKERIDTFKKLGVDPAPWIVELHTRYSLSLGPVIIVLIGIPLSLMFNLK 298

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            +   +   F+ + +  G       +  +   +P     +   +F ++   L ++
Sbjct: 299 SKSWGVILTFVIVVLYQGSGAWLGAMGKERLVDPVTSAWIPNTIFGVTGALLFLL 353


>gi|332991779|gb|AEF01834.1| lipopolysaccharide ABC transporter permease [Alteromonas sp. SN2]
          Length = 353

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 126/354 (35%), Gaps = 3/354 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R +  +  ++   ++ ++ +I+ ++++  V      + +        +P  L
Sbjct: 3   KILDLYIARTLLGTVTVTLSVLIGLSALIKFVEQLRKVGEGDYDMMVAFLYVVLSLPRDL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     +  +  N+EL+++   G SR  +I   +  A ++ + +      +
Sbjct: 63  EQFFPMATLLGGLIGMGVLASNSELVVMQAAGMSRWNIIVSTMKSATIMILLVMAVGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   S  K++  +A    +    E+ ++ +  +         + ++         + D 
Sbjct: 123 TPFSESKAKEIRTEAISGGSLFSSEQLVWAKDGEHFVSIGEVLSRDSLKDINIFDFNDDL 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
               I YA+SG+   D     L+D +V R S  +  +   K   +           + +K
Sbjct: 183 SLESITYAKSGNF--DGSEWRLSDVDVTRFSETAVTLDNEKSMQWNSTLTPDKLGIVAVK 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++S LL+          +    Y     +++ Q +   +  L+++           
Sbjct: 241 PEALSISGLLD-YVGYLANNGQDPSRYELALWRKILQPVSVGVMLLMALSFIFGPLRSVT 299

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                 + +     F +       +  + Q P ++  L   L   +   +++ K
Sbjct: 300 MGARVIMGVLTGFGFFILNEVFGPLSLVYQIPPFLGALLPSLLFAAIAAIMLRK 353


>gi|89070356|ref|ZP_01157663.1| Predicted permease [Oceanicola granulosus HTCC2516]
 gi|89044003|gb|EAR50178.1| Predicted permease [Oceanicola granulosus HTCC2516]
          Length = 370

 Score =  122 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 133/345 (38%), Gaps = 7/345 (2%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           F    L ++ + WV + +   + + S  +S  + L+ S   +P ++ +V P    +    
Sbjct: 4   FGFFSLVLILLYWVNRAVVLFDQLISDGQSALVFLEFSALSLPAIIRIVLPLAAFIAALY 63

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
           V   +   +ELL++ +TG S + L +P     +++++      +++ P   + +     +
Sbjct: 64  VTNKLTTESELLVVQSTGFSPVRLARPAFVFGLIVTLLTGALTHVLVPVAAAQLGARQDE 123

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSID 195
               +T  +L    F    D + + +   N    LQ +F+ D+R++    IY A +  + 
Sbjct: 124 IASNITARFLTPGQFLNPVDGITVYVRDINDAGALQDLFLADTRESGRQVIYTAATAYLV 183

Query: 196 L--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSF--LL 251
                  +++ DG         + +   +F  +T        S    +  ++N+    LL
Sbjct: 184 RSEGGPQLVMVDGLAQTLRGSDQRLYTTRFDDFTYDIGRLIVSEEPGRLRERNVWSGPLL 243

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
             +P             R+E H R+ + L   +  ++   A       R       I ++
Sbjct: 244 QASPALQAQIERPAVALRAEVHDRMNKALLGFVGPVLGFAALLIGGFSRFG-VWRQIVVA 302

Query: 312 LSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLLMI 354
           + +   V    S     ++ +P   P+LY+      +I   L  +
Sbjct: 303 VVLVVVVTSLESVSSTLVDADPTRWPLLYMPTLVGLAIASALFWL 347


>gi|193215417|ref|YP_001996616.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193088894|gb|ACF14169.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 360

 Score =  122 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 111/363 (30%), Gaps = 9/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI R    +   + L  V +  ++ ++++++        L ++ +   Y  P +
Sbjct: 1   MKILDRYIFREYFSTLGFAILAFVSLFILVDLIEKVDDFLDKNVELKLIAQYYLYFTPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    + +  V   + + TEL  +   G S   L+ P   +  ++    F     
Sbjct: 61  IKLIVPISTLLASLFVTGKLAKQTELTAMKAGGISLYRLLLPFFLVGAIIGGIDFYLSGW 120

Query: 121 --IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
              E          +   +     S           + +           T Q + + + 
Sbjct: 121 VVPETTKFKEQFDATYLGKTKWKSSSFSNIELLENPNRIVRIGYFNKDTRTCQNVSLQNY 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISI-MKFKSYTLQTESANSST 237
           + +       A   + D      I             +  S   K  +  L   +     
Sbjct: 181 QKSHMLWRIDAAKMTYDTSLSRWIFYQAYYRDFQSGKEQFSYAAKIDTVQLVFSAKELEE 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  +L                 ++    ++H +++  +  +I  LI +      A
Sbjct: 241 NNAALDQMSLDEHWKYIEARRRAGFSNVDEALVKYHIKISFPIACLIVILIGVPL---SA 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             ++        ISL I F        FS + +K   +P     +  FLF    +  L  
Sbjct: 298 EKKRSGIALEAGISLLIGFLYIILQKTFSTLGYKGAVDPILSAWIPNFLFLTVGLVFLFK 357

Query: 355 KKK 357
            KK
Sbjct: 358 AKK 360


>gi|257468008|ref|ZP_05632104.1| hypothetical protein FulcA4_01652 [Fusobacterium ulcerans ATCC
           49185]
 gi|317062294|ref|ZP_07926779.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313687970|gb|EFS24805.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 362

 Score =  122 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 129/362 (35%), Gaps = 13/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI +   +SF +S +  V I  V Q+ + I  VS    S N  +     +IP +L
Sbjct: 4   KIIDKYISKNFIKSFFLSLIAFVGIFLVSQLFKVIRYVSDGRFSANESITYILTMIPKIL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V P    + +   ++SM  N E++ +   G S   ++   + ++ ++++ +F   + +
Sbjct: 64  IDVAPLAVLLGSLMTVSSMASNLEIISLKTAGISFKRIVLFPICISAVIAVMVFYINDSL 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV----D 177
            P      +++    +        ++N F R ++  Y+ +       T  G  I     +
Sbjct: 124 YPYSVRKNREIKDGERAKREMPVEKKNAFLRGENSNYVYLMGKINRETGFGENIEIVDLN 183

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +  +I  A+ G  +  ++  +L D  ++    + K   +  F       E     T
Sbjct: 184 EEFNKVERIITAKEGRYNFSKKVWVLKDANIYDGEKLEKPKEVKIFTENKYDDEPEKFIT 243

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             ++     +  L   +                E   R +      I   + +       
Sbjct: 244 KSVEPKTLTIKEL-KKSVREIKSIGGDTRELLVEIGNRYSFPFSSFIISFLGLSLG---- 298

Query: 298 LVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
             R  +    I ++LS++ G  ++        +  N +  P +  ++       I +  +
Sbjct: 299 -SRYVRGASAISMALSVALGYGYYIVQASFEALSINGFLNPFISGWIPNIIFLGIGIYFM 357

Query: 355 KK 356
            +
Sbjct: 358 YR 359


>gi|313895766|ref|ZP_07829321.1| permease, YjgP/YjgQ family [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975595|gb|EFR41055.1| permease, YjgP/YjgQ family [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 366

 Score =  122 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 123/365 (33%), Gaps = 12/365 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +  + YI R +  SFL +      +      + +    ++    SL  ++KI  + +P V
Sbjct: 6   RILDKYIFREVFVSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPGV 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +      ++  +E+  + + G +   +  P + L  ++S+   +    
Sbjct: 66  VMWTFPMSMLLASLLTFGKLSSASEITAMKSCGINFTRIAAPAVLLGFVVSVGAILFNEY 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD----DLYIKISKYNPNNTLQGIFIV 176
           + P+  +  + +        +    +E++  +          +    Y+          +
Sbjct: 126 VVPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEITDGQIRRLVYARAYDAEQQRLTNVSL 185

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                     +   +   +   +  I++ G+V+           M+F++  L  +     
Sbjct: 186 QVFGDDGKVSHVENAEYAEWTGKEWIMHSGDVYDI-ADEHMERHMRFETQVLPVQKDPRQ 244

Query: 237 TIV-LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            I   K+ ++     L         +        +E ++R++  +  +IF LI +    +
Sbjct: 245 IIREQKSPEEMTMRELRRQIALMQTQYVNTNKLEAELYQRVSVPMASLIFTLIGVPLGIQ 304

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMI 354
                        F    I    ++    + +   +     P+L +++   +  I   ++
Sbjct: 305 PTRNSSSAG----FAMSVIIIFFYYALMTMGNAFARGGVLPPMLAVWIPNIVGIIAGAIL 360

Query: 355 KKKYT 359
            ++ +
Sbjct: 361 FRRAS 365


>gi|119471262|ref|ZP_01613765.1| hypothetical protein ATW7_11360 [Alteromonadales bacterium TW-7]
 gi|119445728|gb|EAW27011.1| hypothetical protein ATW7_11360 [Alteromonadales bacterium TW-7]
          Length = 354

 Score =  122 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 125/356 (35%), Gaps = 3/356 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+ R I ++   + L +V I+ +I+ ++++  V   +  L   +  + Y IP  
Sbjct: 1   MKTLDWYLGRSILQTTGFALLVLVGISTLIKFIEQLKSVGRGSYDLITAMLYTLYSIPGD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +     L ++  N+EL+++   G SR+ +I  V+  A+ ++I +      
Sbjct: 61  LVVFFPMAALIGGLTGLGALASNSELVVMQAAGMSRLQIIGSVMKTAMFMAICMMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+ +   K++  +A         ++ ++ +  ++                        
Sbjct: 121 GAPEAQLRAKEMRNQAIHGGDVFSAQKGVWAKDGNNFINIEDVDESGKLNGLHMYYFDSS 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +I  A+      D    +L D      +       +   + Y  Q  +     + +
Sbjct: 181 LELTQITKAKEAISRKDG--WLLRDVNKVIITDELITTELHPEEFYPSQLTAEKLGVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    + + L     +      +   TY     ++  Q +   +  L+++          
Sbjct: 239 KPESLSFTGL-WSYLSYLEQNEQDTSTYDLALWRKFMQPVSVAVMLLVALSFIFGPLRTV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  + +   I F +       +  + Q P  I  +   +  I     LM K+
Sbjct: 298 TMGARIIMGVVTGIVFHLTNEIFGPVVMVYQIPAIIGAVLPSVIFIGFATYLMNKR 353


>gi|313668050|ref|YP_004048334.1| hypothetical protein NLA_7120 [Neisseria lactamica ST-640]
 gi|313005512|emb|CBN86948.1| conserved hypothetical integral membrane protein [Neisseria
           lactamica 020-06]
          Length = 356

 Score =  122 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 120/363 (33%), Gaps = 10/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMTAMTVYTLLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L  +  ++EL +I   G S   L+  +    ++ ++        
Sbjct: 61  AYELMPLATLIGGLLSLGRLAADSELTVIKAGGVSTRKLLSVLSQFGLIFALATAALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      + + A A      +       +  + +  I I +  P++TL GI I +  D
Sbjct: 121 IAPALNQKAENIKAAAINGKISTGN--TGLWLKEQNSIINIREMLPDHTLLGIKIWERND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++  D  +  L +           + S    ++  +  +      +++
Sbjct: 179 KNELVQATEAESAVLNDDGSWQLKNIRRSTLGEDKVETSTAAEENLPISVKRNLMEVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L     ++     +  + Y      +L   +   +  L+++         R
Sbjct: 239 KPDQMSVGELT-AYISHLENNRQNTQIYAIALWHKLVYPVAAWVMALVALAF--TPQTTR 295

Query: 301 QRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +F  + +     +    F +        P+   IL   LF +  I   +I+K+
Sbjct: 296 HGNMGLKLFGGICLGLLFHFAGRLFGFTARLYGVPPFLAGILPTALFALIGI--WLIRKQ 353

Query: 358 YTK 360
             +
Sbjct: 354 EKR 356


>gi|261401001|ref|ZP_05987126.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
 gi|269209118|gb|EEZ75573.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
 gi|309378517|emb|CBX22870.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 356

 Score =  122 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 120/363 (33%), Gaps = 10/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMTAMTVYTLLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L  +  ++EL +I   G S   L+  +    ++ ++        
Sbjct: 61  AYELMPLATLIGGLLSLGRLAADSELTVIKAGGVSTRKLLSVLSQFGLIFALATAALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      + + A A      +       +  + +  I I +  P++TL GI I +  D
Sbjct: 121 IAPALNQKAENIKAAAINGKISTGN--TGLWLKEQNSIINIREMLPDHTLLGIKIWERND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++  D  +  L +           + S    ++  +  +      +++
Sbjct: 179 KNELVQATEAESAVLNDDGSWQLKNIRRSTLGEDKVETSSAAEENLPISVKRNLMEVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L     ++     +  + Y      +L   +   +  L+++         R
Sbjct: 239 KPDQMSVGELT-AYISHLENNRQNTQIYAIALWHKLVYPVAAWVMALVALAF--TPQTTR 295

Query: 301 QRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +F  + +     +    F +        P+   IL   LF +  I   +I+K+
Sbjct: 296 HGNMGLKLFGGICLGLLFHFAGRLFGFTARLYGVPPFLAGILPTALFALIGI--WLIRKQ 353

Query: 358 YTK 360
             +
Sbjct: 354 EKR 356


>gi|332292438|ref|YP_004431047.1| permease YjgP/YjgQ family protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170524|gb|AEE19779.1| permease YjgP/YjgQ family protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 358

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 127/362 (35%), Gaps = 9/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI++    +F+   +  + I  ++ + ++I+ + ++      +           
Sbjct: 1   MKILDWYIVKRYIGTFVTMLVLFIPIGIIVNLAEKIDKILANEAPFGEVALYYLNFTIYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++   ++G S    ++P L  A ++ +  F     
Sbjct: 61  ANLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGVSFYRFLRPYLIGATIVCVGAFFLGTY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+      +   +           +N++ ++D   YI +S + P       F  +  +
Sbjct: 121 LAPRANKGYNEFIFEYLKKNKKDRETQNVYRQIDTGDYIYVSSFTPRTKTGRNFTWEHFE 180

Query: 181 TQTHKIYYAQ-SGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                   +      + +     LN  +    +     +            +  + + + 
Sbjct: 181 GNKMTYKMSAIRIRYNEEDTTYTLNSFKKRTITENGDILESKAKLDTVFNFDMDDLTPVE 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             A   +   L        +     +  Y     KR +  +   I  +I++      A+ 
Sbjct: 241 YIAETLSTPELRKFIAKEKSRGSSYISRYEVTLQKRYSLPVAAYILTIIAVAV---SAMK 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMIK 355
           R+      +   + ++F VF  F  +   + +   + P++ ++    LF I +++LL   
Sbjct: 298 RRGGMGINLAFGIVLAF-VFIFFDKVFGTLAEQSDFPPLVAVWTPNILFAILAVYLLRNA 356

Query: 356 KK 357
           K+
Sbjct: 357 KR 358


>gi|237653448|ref|YP_002889762.1| permease YjgP/YjgQ family protein [Thauera sp. MZ1T]
 gi|237624695|gb|ACR01385.1| permease YjgP/YjgQ family protein [Thauera sp. MZ1T]
          Length = 358

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/357 (11%), Positives = 105/357 (29%), Gaps = 4/357 (1%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+ R I  +  +  +  + +      +  +  V     +L   L   G  +P  +  
Sbjct: 5   LLRYLAREIFAASALVLVAFLGLFAFFDFINELEDVGKGGYTLYQALVYVGLTLPARVYE 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P    + T   L ++ +N+E+ ++  +G S   L+  VL L   +   L         
Sbjct: 65  LMPIAVLIGTLYALATLAKNSEITVMRASGMSN-ALLTSVLGLIGGVFAVLIFLVGEYVA 123

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                  +         T S    +  +  D  L + +    P+ +++G  I    +   
Sbjct: 124 PPAEAAAEEWKLTATQATVSQQLRSGLWVKDGRLVLNVRTLMPDRSMRGARIYAFDEDYA 183

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            +     +  +        L D +  R      +I  +    +  +        +++   
Sbjct: 184 LESIAEAATGVFDGSGEWKLLDVQRTRFHGDRTEIERLPEIRWRSELTPEVLGVLMVSPE 243

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
                 L     N+     +  + +     K+L      ++   +++         R   
Sbjct: 244 HMPFGRL-WTYINHLRDNNQNADRFEIALWKKLIYPFTALVMMALAMPFGFI--HDRMGG 300

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
               IF+ + +  G         +    N +   +  L    I       +  +  +
Sbjct: 301 ASARIFMGVMLGVGFHLLNGLFSNLGMINAWPPFMAALTPSLIFLAAAFWLMHRVER 357


>gi|114048398|ref|YP_738948.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-7]
 gi|113889840|gb|ABI43891.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-7]
          Length = 352

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 118/355 (33%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ LV   + ++        +L+P  
Sbjct: 1   MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGSYTMMDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P             +L+           +  D DL++ I +    + L  I +     
Sbjct: 121 GAPVAEQK-ANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGEVADIDKLNNITLYKFNS 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++  +    ++ D +    S     +  +    +         S + +
Sbjct: 180 ELKLTNVVHAKSALFSNDSWHLM-DVKRTDLSYDEVKLEHLDEDIWRSSLTPDKLSVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++  L+    +      +    Y     +++ Q +   +  L+++          
Sbjct: 239 KPEALSIRGLM-GYLDYLKNNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGPLRTV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  + +    SF +       +  + + P Y+  +   L      F  + +
Sbjct: 298 TMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAIAPSLLFTGIAFYFIRR 352


>gi|153834586|ref|ZP_01987253.1| permease YjgP/YjgQ family protein [Vibrio harveyi HY01]
 gi|148869029|gb|EDL68074.1| permease YjgP/YjgQ family protein [Vibrio harveyi HY01]
          Length = 356

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 119/355 (33%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +     V ++ +I+ ++++  V      L   L      IP  +
Sbjct: 3   KLLDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGRGAYDLMHALYFVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +      L+           +  D + +I I K   +            D 
Sbjct: 123 APEAQ-KMARDLRAFALSGGSIVSVRAGVWARDANDFIFIGKVEDDKLYGLNMWRFDEDK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +  K+ +A+      D   ++        ++        ++   +         + + +K
Sbjct: 182 KLDKVIFAEEVDYQQDNNWLMRYVQVTDMENENVITKRDVEQMEWHTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +          +    Y   F ++L+Q L   +  L+++           
Sbjct: 242 PEELSLSGLYD-YVTYLKASEQDASRYELAFWRKLSQPLSIAVMMLMALSFVFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   +  +   P     L   L  ++    L+ +K
Sbjct: 301 MGARVLSGVVAGFTFYISSEFFGPLTLVYGIPPVFGALAPSLVFLAIAVSLLRRK 355


>gi|292669943|ref|ZP_06603369.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648414|gb|EFF66386.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 366

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/362 (9%), Positives = 115/362 (31%), Gaps = 11/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +  + YI R +  SFL +      +      + +    ++    SL  ++KI  + +P V
Sbjct: 6   RILDKYIFREVFSSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPGV 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +      ++  +E+  + + G     +  P + L  ++S+        
Sbjct: 66  VMWTFPMAMLLASLLTFGRLSSASEITAMKSCGIGFGRIAAPAILLGFIVSVGAIFFNEH 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD----DLYIKISKYNPNNTLQGIFIV 176
           + P+  +  + +        +    +E++  +  +       +    Y+          +
Sbjct: 126 VVPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEIEEGQIRRLVYARSYDAEQERLTGISL 185

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                     +   +   +      I+++G+V+  +    +  +          +     
Sbjct: 186 QVFGDDGKVTHVENAEYAEWTGTEWIMHNGDVYDIADEHLERRMRFETQVLPVQKDPRQI 245

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               K  ++     L         +        +E ++R++  +  +IF LI +    + 
Sbjct: 246 IREQKVPEEMTMRELRHQIALMQTQYVNTSKLEAELYQRVSVPMASLIFTLIGVPLGLQP 305

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMI 354
                       F    I    ++    + +   +     P+L +++          +++
Sbjct: 306 TRNSSSAG----FAMSVIIIFFYYALMTMGNAFARGEVLPPMLAVWIPNIVGIIAGTILL 361

Query: 355 KK 356
           ++
Sbjct: 362 RR 363


>gi|127511873|ref|YP_001093070.1| permease YjgP/YjgQ family protein [Shewanella loihica PV-4]
 gi|126637168|gb|ABO22811.1| permease YjgP/YjgQ family protein [Shewanella loihica PV-4]
          Length = 370

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 129/365 (35%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  +P +  
Sbjct: 2   IVFRYLIREVLKAQMAVLLVLLAIFISQHFVRVLADASDGEFPASLVMTLLGLNLPYLAV 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M   +E+++  + G S   + +  L LA+   +F       + 
Sbjct: 62  LVVPLSLFLGILVAHGRMYAESEMVVFHSVGVSEWYVTRVTLLLAVANMLFTGFLVIYVT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-----VD 177
           P    T  ++   AQ     + L +  F    +   +   +    +              
Sbjct: 122 PWAEETQNRVLENAQSEAGLAALTQGRFQTSPNGRAVLFVERIGRDNQLDKVFVAQLPDP 181

Query: 178 SRDTQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                   I  AQ GS+  D    Q + LNDG  ++      D  +++F  Y +Q +   
Sbjct: 182 EDGASQSNIVVAQGGSVIEDESGEQRLKLNDGIQYQSKQNQLDYQVVQFAGYEMQIKEQE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +   +  LL+                 +EFH RL   L      LI++  A 
Sbjct: 242 VDQRRRKLSALPIDQLLDTE----------GPEAVAEFHWRLAIPLAIPFMTLIAVPMA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ--NPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +F ++ +  G F         +E    P Y+ + ++    +    LL
Sbjct: 291 --RVNVRQGKFAKMFPAILLYLGYFGLMIAGRKALEDEVIPAYLGMWWIHASALFLGMLL 348

Query: 353 MIKKK 357
           + K++
Sbjct: 349 LSKER 353


>gi|320530395|ref|ZP_08031454.1| hypothetical protein HMPREF9555_01558 [Selenomonas artemidis F0399]
 gi|320137359|gb|EFW29282.1| hypothetical protein HMPREF9555_01558 [Selenomonas artemidis F0399]
          Length = 369

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 123/365 (33%), Gaps = 12/365 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +  + YI R +  SFL +      +      + +    ++    SL  ++KI  + +P V
Sbjct: 9   RILDKYIFREVFVSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPGV 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +      ++  +E+  + + G +   +  P + L  ++S+   +    
Sbjct: 69  VMWTFPMSMLLASLLTFGKLSSASEITAMKSCGINFTRIAAPAVLLGFVVSVGAILFNEY 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD----DLYIKISKYNPNNTLQGIFIV 176
           + P+  +  + +        +    +E++  +          +    Y+          +
Sbjct: 129 VVPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEITDGQIRRLVYARAYDAEQQRLTNVSL 188

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                     +   +   +   +  I++ G+V+           M+F++  L  +     
Sbjct: 189 QVFGDDGKVSHVENAEYAEWTGKEWIMHSGDVYDI-ADEHMERHMRFETQVLPVQKDPRQ 247

Query: 237 TIV-LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            I   K+ ++     L         +        +E ++R++  +  +IF LI +    +
Sbjct: 248 IIREQKSPEEMTMRELRRQIALMQTQYVNTNKLEAELYQRVSVPMASLIFTLIGVPLGIQ 307

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMI 354
                        F    I    ++    + +   +     P+L +++   +  I   ++
Sbjct: 308 PTRNSSSAG----FAMSVIIIFFYYALMTMGNAFARGGVLPPMLAVWIPNIVGIIAGAIL 363

Query: 355 KKKYT 359
            ++ +
Sbjct: 364 FRRAS 368


>gi|186681603|ref|YP_001864799.1| permease YjgP/YjgQ family protein [Nostoc punctiforme PCC 73102]
 gi|186464055|gb|ACC79856.1| permease YjgP/YjgQ family protein [Nostoc punctiforme PCC 73102]
          Length = 391

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 122/358 (34%), Gaps = 20/358 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTV 60
              + Y+   +   F         +   I  +   +  +  S   ++I +++     P  
Sbjct: 19  TIMDRYLTSELIAPFFFGVGAFSSLGVTIDAVFDLVRKIVESGLPIDIAIQVFLLKFPNF 78

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T    + ++  +EL+ +   G S   ++   + L+++++   F+    
Sbjct: 79  IVLAFPMSTLLATLMTYSRLSSESELIALRGCGVSVYRIVLTAVMLSLVVTGMTFVFNEQ 138

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI------------KISKYNPNN 168
           I P           KA  +   ++ ++N+F+    D+                +      
Sbjct: 139 IAPAANYQAGVTLDKALKSDKPAFKQQNIFYPEYQDVIQPDGSKNRILTRLFYADQFDGK 198

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            + G+ I+D      ++I  ++S   +  +      +G ++  +      +I++F+   L
Sbjct: 199 RMTGLTIIDRSTKNLNQIVVSESAQWNPSQNIWDFYNGTIYFVAADRSYRNIVRFEHQQL 258

Query: 229 QT--ESANSSTIVLKANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
           Q      + +       + N+S  L            + +        ++++     V+F
Sbjct: 259 QLPRTPLSLAEKSRDYGEMNISEALDQLQVEYLGGDRQKIRKLEVRIQQKISLPFVCVVF 318

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           GL+            +        IS+ + F  +  F +I   I Q     P +  +L
Sbjct: 319 GLVGAAMGSIPQRTGRG---TSFGISVVVIFSYYLIF-FISGAIAQAGALSPFMGAWL 372


>gi|39997021|ref|NP_952972.1| hypothetical protein GSU1923 [Geobacter sulfurreducens PCA]
 gi|39983909|gb|AAR35299.1| membrane protein, putative [Geobacter sulfurreducens PCA]
 gi|298506038|gb|ADI84761.1| membrane protein, YjgQ-related [Geobacter sulfurreducens KN400]
          Length = 358

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 118/362 (32%), Gaps = 9/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI     +   +     V I  VI  L++I  +         +++     +P +
Sbjct: 1   MTILTRYIAGAYLKILGLCLASFVAIYLVIDFLEKIGRLLRFQPRWIDIIQYFICKLPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    M T   L  ++RN+E++ +   G     +  P++ +A  +S+    S   
Sbjct: 61  ITQVIPLAVLMSTLLTLGMLSRNSEIVAMRGCGVGLGRISAPLIVIAAAVSLLTIFSNEF 120

Query: 121 IEPKCRSTIKQLSAK-AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P     ++ +     +   T ++  +N  +  D+   +    ++P         +   
Sbjct: 121 VLPSSYRQMRYVDQVLIRKQGTNTFFRQNNIWHKDESAIMMARVFDPGRQALRGITLWRF 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                 +    +     D          V   +  S +   +      L  +  +   + 
Sbjct: 181 SDGMRPVSRIDAAEGTWDGARWTFKTVTVRGLAGPSVETRTLASLPAELNLKIEDLKVVD 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             A++     L                 Y ++ H +++     +I   + I  A +    
Sbjct: 241 KYADNMGFFKL-RDYVRKLKAGGYDTTRYEAQMHSKISLPFASLIMAFLGIPFALRGG-- 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMIK 355
           R       I  S+ I F  F   S +I    Q     P++  +    LF +S I+L M  
Sbjct: 298 RSSGVALGITASIGIGFAYFITNSILIS-FGQTGILPPLISAWAANVLFALSGIWLAMTL 356

Query: 356 KK 357
            +
Sbjct: 357 DR 358


>gi|304437499|ref|ZP_07397457.1| permease YjgP/YjgQ family protein [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369549|gb|EFM23216.1| permease YjgP/YjgQ family protein [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 376

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/366 (12%), Positives = 126/366 (34%), Gaps = 12/366 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +  + YI R +  SFL +      +      + +    ++    SL  ++KI  + +P V
Sbjct: 16  RILDKYIFREVFLSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPGV 75

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +      ++ ++E+  + + G     +  P + L  L+S+   +    
Sbjct: 76  VMWTFPMSMLLASLLTFGRLSSSSEITAMKSCGIGFGRIAAPAILLGFLVSVGAILFNEH 135

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD----DLYIKISKYNPNNTLQGIFIV 176
           + P+  +  + +        +    +E++  +  +       +    YN          +
Sbjct: 136 VVPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEIEGGQIKRLVYARSYNAEQQQLTGVSL 195

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                     +   +   +      I++ G+V+           M+F++  L  E     
Sbjct: 196 QIFGADGKVSHVENAEYAEWTGSEWIMHKGDVYDI-ADEHLERRMRFETQVLPVEKDPRQ 254

Query: 237 TIV-LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            I   K+ ++     L         +        +E ++R++  +  +IF LI +    +
Sbjct: 255 IIREQKSPEEMTMRELRHQIALMQTQYVNTSKLEAELYQRVSVPMASLIFTLIGVPLGLQ 314

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMI 354
                        F    I   +++    + +   +     P+L +++   +  I  +++
Sbjct: 315 PTRNSSSAG----FAMSVIIIFIYYALMTMGNAFARGEVLPPMLAVWIPNIVGIIAGIIL 370

Query: 355 KKKYTK 360
            ++ ++
Sbjct: 371 LRRASR 376


>gi|238927586|ref|ZP_04659346.1| permease YjgP/YjgQ family protein [Selenomonas flueggei ATCC 43531]
 gi|238884511|gb|EEQ48149.1| permease YjgP/YjgQ family protein [Selenomonas flueggei ATCC 43531]
          Length = 379

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/362 (10%), Positives = 122/362 (33%), Gaps = 11/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +  + YI R +  SFL +      +      + +    ++    SL  ++KI  + +P V
Sbjct: 19  RILDKYIFREVFLSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPGV 78

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +      ++ ++E+  + + G     +  P + L  ++S+   +    
Sbjct: 79  VMWTFPMSMLLASLLTFGRLSSSSEITAMKSCGIGFGRIAAPAILLGFVVSVGAVLFNEH 138

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD----DLYIKISKYNPNNTLQGIFIV 176
           + P+  +  + +        +    +E++  +  +       +    Y+          +
Sbjct: 139 VVPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEIEGGQIKRLVYARSYDAEQQHLTGVSL 198

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                     +   +   +      I++ G+V+  +    +  +          ++    
Sbjct: 199 QIFGADGKVSHVENAEYAEWTGSEWIMHQGDVYDIADEHLERRMHFETQVLPVEKNPRQI 258

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               KA ++     L         +        +E ++R++  +  +IF LI +    + 
Sbjct: 259 IREQKAPEEMTMRELRHQITLMQTQYVNTNKLEAELYQRVSVPMASLIFTLIGVPLGLQP 318

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL--LMI 354
                       F    I   +++    + + + +     P+  +++  I  IF   +++
Sbjct: 319 TRNSSSAG----FAMSVIIIFIYYALMTMGNALARGGVLPPMFAVWIPNIVGIFAGGILL 374

Query: 355 KK 356
           ++
Sbjct: 375 RR 376


>gi|156975867|ref|YP_001446774.1| hypothetical protein VIBHAR_03633 [Vibrio harveyi ATCC BAA-1116]
 gi|156527461|gb|ABU72547.1| hypothetical protein VIBHAR_03633 [Vibrio harveyi ATCC BAA-1116]
          Length = 356

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 120/355 (33%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +     V ++ +I+ ++++  V      L   L      IP  +
Sbjct: 3   KLLDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGRGAYDLMHALYFVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +      L+           +  D + +I I K   +            D 
Sbjct: 123 APEAQ-KMARDLRAFALSGGSIVSVRAGVWARDANDFIFIGKVEDDKLYGLNMWRFDEDK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +  K+ +A+      D   ++        ++        ++   +         + + +K
Sbjct: 182 KLDKVIFAEEVDYQQDNNWLMRYVQVTDMENENVITKRDVEQMEWHTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +   +      +    Y   F ++L+Q L   +  L+++           
Sbjct: 242 PEELSLSGLYD-YVSYLKATEQDASRYELAFWRKLSQPLSIAVMMLMALSFVFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   +  +   P     L   L  ++    L+ +K
Sbjct: 301 MGSRVLSGVVAGFTFYISSEFFGPLTLVYGIPPVFGALAPSLVFLAIAISLLRRK 355


>gi|325578599|ref|ZP_08148699.1| YjgP/YjgQ family membrane protein [Haemophilus parainfluenzae ATCC
           33392]
 gi|301156461|emb|CBW15932.1| conserved inner membrane protein [Haemophilus parainfluenzae T3T1]
 gi|325159835|gb|EGC71965.1| YjgP/YjgQ family membrane protein [Haemophilus parainfluenzae ATCC
           33392]
          Length = 359

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/357 (11%), Positives = 115/357 (32%), Gaps = 1/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + YI + I  +   +   +V ++ +I+ +++   V   +  +   +  +G  IP  
Sbjct: 3   MNTLDRYIGKSILGAIFATLFTLVGLSAIIKFVEQFRSVGKGSYDIWQAVAYTGLTIPKD 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ + G SR  +   V+  A+ L +F  I    
Sbjct: 63  VETFFPMAALLGALIALGNLASRSELVVMQSAGFSRFKIGLAVMKTALPLVLFTMIIGEW 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+     + +  +A    +   ++  ++ +  ++        +               
Sbjct: 123 GIPQTEQFARDMRTRALSGGSMLSVKNGVWAKDGNNFVYVRRITDDAQLEDIYIYTFDEQ 182

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                + +A       +     L        S      +    + +           + L
Sbjct: 183 RNLTHLKHANQAQYSAENNQWQLRQVNNSAVSKEQITTTNRLTEDWATSLTPDKLGAVSL 242

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    ++S L            +    +   + +++ Q L   +  ++++          
Sbjct: 243 RPTSLSISGLY-EYIAFLKQTGQDSRRFELTYWRKIFQPLSVGVMMMLALSFIFGSLRSV 301

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    I     F V       +  +   P ++  L   L  ++ I+ L+ +K+
Sbjct: 302 TAGARIVTGICFGFLFYVVNEIFGQMSVVFNAPAFLGALMPSLLFMAIIWWLLARKR 358


>gi|308050967|ref|YP_003914533.1| permease YjgP/YjgQ family protein [Ferrimonas balearica DSM 9799]
 gi|307633157|gb|ADN77459.1| permease YjgP/YjgQ family protein [Ferrimonas balearica DSM 9799]
          Length = 354

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 119/355 (33%), Gaps = 3/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  +LYI R I  +  +  L +  ++ +I+ + ++ LV     +   +     +L+P  +
Sbjct: 3   RILDLYIARTIINTSALCLLVLTGLSGLIKFVDQLRLVGRGDFTTWDVALYVLFLVPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     +  +  ++EL+++   G SR+ +   V+  A+ L I   +    +
Sbjct: 63  EMFFPIAAMLGALIGMGMLASSSELVVMQAAGLSRLNIAASVMKTAVPLMIIAMLIGEYV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P       +     + +           +  D +L++ I++     TL+G+ I      
Sbjct: 123 AP-VSEQTAREMRAQKTSGGSLISSSTGTWAKDGELFVNITEVQDARTLKGVTIYRFDGD 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              +        +   +   +L D      +             +           + +K
Sbjct: 182 NLLREITFAEQGLYDGKAWRLL-DVTETDLTDEQVSTLDRDELRWPSSLTPEKLQVVTVK 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++  L++   +      +    Y     +++ Q +   +  ++++           
Sbjct: 241 PEGLSIEGLID-YVDYLKANRQDTTRYELALWRKVAQPITVGVMMMLALSFIFGPLRTVT 299

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                 + +    SF +       +  +   P ++  +   +    + F L+ ++
Sbjct: 300 MGARVLLGVITGFSFYIANEIFGPMSLVMGLPTFLGAMLPSILFAIAAFALLQRR 354


>gi|298492659|ref|YP_003722836.1| permease YjgP/YjgQ family protein ['Nostoc azollae' 0708]
 gi|298234577|gb|ADI65713.1| permease YjgP/YjgQ family protein ['Nostoc azollae' 0708]
          Length = 391

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 130/376 (34%), Gaps = 20/376 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTV 60
              + Y+   +   FL        +   I  + + +  V  S   +NI LK+    +P V
Sbjct: 19  SIMDRYLAMQLLPLFLFGVGAFTSVVLAIDSLFELLRKVVESGLPINIALKVFILKLPYV 78

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + T    + ++  +EL+ +   G S   ++   + L+ L++   +I    
Sbjct: 79  MVYSFPMSTLLATLMTYSRLSSESELIALRGCGVSVYRMVLTAVLLSSLVTAMTYIFNEQ 138

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL------------YIKISKYNPNN 168
           I P       +   +A  +   S+ + N+++    ++             +  +      
Sbjct: 139 IAPAANYEATRTLEQALKSDKPSFKQHNIYYPEYREVKEKDGSTTKILSRLFYADQFDGK 198

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            +QG+ I+D      ++I  ++S   +  ++     +G ++  +P     +I++F+   L
Sbjct: 199 QMQGLTIIDRSREGLNQILVSESAQWNASQKVWNFYNGTIYLVAPDRSYRNILRFEHQQL 258

Query: 229 QT--ESANSSTIVLKANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
           Q      N +       + N+S  L           P+ +        +++      +IF
Sbjct: 259 QLPRTPLNLAENSRDYGEMNISQALQQLEVERLAGNPQKIRKLEVRIQQKIAFPFVCIIF 318

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLF 344
           GL+            +        IS+ + F  +   S      + +     I  +L   
Sbjct: 319 GLVGSAMGTIPQRTGRG---TSFGISVIVIFSYYLLLSVSGALAQADILSPLIGAWLPNS 375

Query: 345 CISSIFLLMIKKKYTK 360
                 L ++ +   +
Sbjct: 376 FGLVTGLFLLMRVAQR 391


>gi|163750106|ref|ZP_02157349.1| hypothetical protein KT99_20601 [Shewanella benthica KT99]
 gi|161330163|gb|EDQ01145.1| hypothetical protein KT99_20601 [Shewanella benthica KT99]
          Length = 364

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 132/360 (36%), Gaps = 23/360 (6%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           ++R + ++ +     ++ I      ++ +   S      ++++ + G  +P +  +V P 
Sbjct: 1   MIREVFKAQIAVLAVLLAIFISQHFVRVLADASDGEFPASLVMTLLGLNLPYLAVLVIPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +        M  ++E++I+   G S   + +  L LA+   IF  I    + P    
Sbjct: 61  SLFLGILMAHGRMYADSEMVILHGVGVSEWYITRVTLLLAVGNMIFTGILSVYVTPWAEE 120

Query: 128 TIKQLSAKAQLAL-TFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
              Q+   AQ      +  +       +    + + +   NN L  +F+    D      
Sbjct: 121 KQNQVLEHAQSEAGLAAITQGRFQTSPNGRAVLFVERIGRNNELYKVFVAQLPDPDDESG 180

Query: 187 YYA-------QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                     +    +   Q + L+DG  ++ +P   D  I++F SY +Q +        
Sbjct: 181 ISNIVVAQGGKVIEDETGGQRLQLSDGVQYQATPKKVDFQIIEFGSYQMQIKEQPVDERR 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            K +   ++ L++                 +EFH RL   L   +  LI++  A    + 
Sbjct: 241 RKLSAMPINELMDIE----------GPAATAEFHWRLAIPLAIPLMTLIAVPMA---RVN 287

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIKKK 357
            ++ K   +F ++ +  G F         +     P Y+ + ++    +    LL+ K++
Sbjct: 288 VRQGKFAKMFPAVLLYLGYFCLMIAGRKALEDGVIPEYLGMWWIHASALCMGILLLGKER 347


>gi|194334630|ref|YP_002016490.1| permease YjgP/YjgQ family protein [Prosthecochloris aestuarii DSM
           271]
 gi|194312448|gb|ACF46843.1| permease YjgP/YjgQ family protein [Prosthecochloris aestuarii DSM
           271]
          Length = 387

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 123/358 (34%), Gaps = 9/358 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YI R  G + + + L  + +  V+ +++ I+    ++  +  +       +P V
Sbjct: 28  LKRIDTYIARQFGLTCIFASLSFLALFVVLDLIENIDRFIDNSVDIQHISLYYLSFLPEV 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
               TP    + +  V   ++ ++EL  I + G S   ++ P  F+++++++F  ++   
Sbjct: 88  FLATTPIAVLLSSLYVTGRLSSSSELSAIFSAGLSLRRIMLPFAFVSLVITVFNIVNAGW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+  +       +     +     E+    L+    I        NT Q   I     
Sbjct: 148 ILPETTAYKNTFMREFLGKNSEHLFPESRIHILESRDRILSIGKLEPNTGQAEKITLETF 207

Query: 181 TQTH--KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK-FKSYTLQTESANSST 237
             +   +   A+  + + D    I+         P +          +  L   +++   
Sbjct: 208 DGSTITQRIDAEKMNYNADLDRWIMTGTRNRTFLPDTTLYRYDPGNDTLKLSLTASSLKE 267

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + L+  + N+           +     L+T   E H R+   +  +I  LI +       
Sbjct: 268 LHLRPEEMNIVQHYRYIEEKKDAGFSNLQTAIIELHSRIALPITSLIIILIGVPL---ST 324

Query: 298 LVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
             ++        IS+ I F           I +    +P     L   +F    I L 
Sbjct: 325 RKKRSGLAIEAGISILIGFLYISLEKTIHAIGNGGMADPVLTAWLPNIIFLGVGIVLY 382


>gi|87124323|ref|ZP_01080172.1| possible permease [Synechococcus sp. RS9917]
 gi|86167895|gb|EAQ69153.1| possible permease [Synechococcus sp. RS9917]
          Length = 388

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 134/375 (35%), Gaps = 21/375 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  +    L +      ++  +  + + +  +  S   + I +++    +P+ L
Sbjct: 18  LLDRWLLGELIGPLLFAIAAFTVVSLSVGVMFELVRRIVESGLPVGIAVQVLLLRLPSFL 77

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M T    + ++ N+EL  + + G S   +I P L LA++++   F+  ++I
Sbjct: 78  VISFPMATLMATLLAYSRLSANSELTALRSVGISATRMIAPALALALVMTGLTFVFNDVI 137

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI------------KISKYNPNNT 169
            P+   + +    +A      +    N+ +     L                +K      
Sbjct: 138 VPRTSLSAEITLQRALGRSVSTEKGNNIIYSRFGRLVAGDGESETGLAQLFYAKKFNEGV 197

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           + G+ ++D       ++  A     +         DG++   SP    ++   F  Y   
Sbjct: 198 MSGVTVLDFSRLGFTQMLVADEARWNERESKWEFLDGQILTLSPSGS-VTSADFDRYLYP 256

Query: 230 TESANSST--IVLKANDQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
             +A      +   AN+  ++  +      +     +     R    ++ T  +  ++FG
Sbjct: 257 LSAAPIRIAKLPKDANNMTVAEAIEAERMLDEAGDRKEARRMRVRIQEKFTLPMACLVFG 316

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFC 345
           LI      K     +  +     IS+ +   V++  S+    +       P++  +    
Sbjct: 317 LIGSSLGAKP--NGRTSRSQGFGISVVL-ILVYYVLSFSFSSLGVKGTLPPVVAAWAPVL 373

Query: 346 ISSIFLLMIKKKYTK 360
           IS     ++ ++ ++
Sbjct: 374 ISLAGGGLLLRQASR 388


>gi|294102483|ref|YP_003554341.1| permease YjgP/YjgQ family protein [Aminobacterium colombiense DSM
           12261]
 gi|293617463|gb|ADE57617.1| permease YjgP/YjgQ family protein [Aminobacterium colombiense DSM
           12261]
          Length = 365

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 128/356 (35%), Gaps = 13/356 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPTVL 61
             + +I + +  SF+   +    +     +L +I +++     S+ ++L++  Y +P V+
Sbjct: 6   ILDRFIWKEMAGSFVFGVMAFTMVFVAGDLLFQIASMIIEKGISIGVVLRLFIYSLPEVI 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +        ++ N+E++ +  +G S   ++KPV+  ++L+ +   I    +
Sbjct: 66  ILTLPMACLLSALLTFGKLSTNSEIVALKASGISFQRILKPVIVGSLLVGLSALILNETV 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQGIFIVD 177
            P      + L     +    S L+E +F R + +      I I K  P        +V 
Sbjct: 126 VPFSNRAAENLMRFEVMREKPSVLKEQVFLRDESNGQLNRVIYIEKLQPRKGTMTNVLVQ 185

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANS 235
             +    K        +  D +  I +DGEV + +   K   + +F+             
Sbjct: 186 EFEKGKLKRITVGKTGLWKDGKWWI-DDGEVFQVTNGGKVELLFRFERQQFDLNLSPQQV 244

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                K ++ +   L+         +   L      FH R       V+  ++       
Sbjct: 245 EQASRKPSEMSALELM-AQIRLLQAQGGNLAPLWVLFHLRFAVPWASVVLAILGASLGV- 302

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                +        +S+ I F V++    +     +  +  P+L  ++  +  + +
Sbjct: 303 --RSHRTGSGVGFGLSVMIVF-VYYVVMSLCKAFGETEHMPPLLAAWVPNVLFLLV 355


>gi|269963273|ref|ZP_06177605.1| Predicted permease [Vibrio harveyi 1DA3]
 gi|269831988|gb|EEZ86115.1| Predicted permease [Vibrio harveyi 1DA3]
          Length = 356

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 118/355 (33%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +     V ++ +I+ ++++  V      L   L      IP  +
Sbjct: 3   KLLDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGRGAYDLMHALYFVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +      L+           +  D + +I I K   +            D 
Sbjct: 123 APEAQ-KMARDLRAFALSGGSIVSVRAGVWARDANDFIFIGKVEDDKLYGLNMWRFDEDK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              K+ +A+      D   ++        ++        ++   +         + + +K
Sbjct: 182 NLDKVIFAEEVDYQQDNNWLMRYVQITDMENENVITKRDLEQMEWHTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +          +    Y   F ++L+Q L   +  L+++           
Sbjct: 242 PEELSLSGLYD-YVTYLKASEQDASRYELAFWRKLSQPLSIAVMMLMALSFVFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   +  +   P     L   L  ++    L+ +K
Sbjct: 301 MGARVLSGVVAGFTFYISSEFFGPLTLVYGIPPVFGALAPSLVFLAIAVSLLRRK 355


>gi|117921443|ref|YP_870635.1| permease YjgP/YjgQ family protein [Shewanella sp. ANA-3]
 gi|117613775|gb|ABK49229.1| permease YjgP/YjgQ family protein [Shewanella sp. ANA-3]
          Length = 352

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 117/355 (32%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ LV   + ++        +L+P  
Sbjct: 1   MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGSYTMMDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P             +L+           +  D DL++ I +    + L  I +     
Sbjct: 121 GAPVAEQK-ANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGEVADIDKLNNITLYKFNS 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++       ++ D +    S     +  +    +         S + +
Sbjct: 180 ELKLTNVVHAKSALFSKDSWHLM-DVKRTDLSYDEVKLEHLDEDIWRSSLTPDKLSVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++  L+    +      +    Y     +++ Q +   +  L+++          
Sbjct: 239 KPEALSIRGLM-GYLDYLKNNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGPLRTV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  + +    SF +       +  + + P Y+  +   L      F  + +
Sbjct: 298 TMGARVLLGVVAGFSFYISNEIFGPMSMVYELPAYVGAIAPSLLFTGIAFYFIRR 352


>gi|24372948|ref|NP_716990.1| hypothetical protein SO_1370 [Shewanella oneidensis MR-1]
 gi|24347091|gb|AAN54435.1|AE015581_2 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 352

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 118/355 (33%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ LV   T ++        +L+P  
Sbjct: 1   MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGTYTMMDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P             +L+           +  D DL++ I +    + L  I +     
Sbjct: 121 GAPIAEQK-ANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGEVADIDKLNNITLYKFNS 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++     + +L D +    S     +  +    +         S + +
Sbjct: 180 ELKLTNVVHAESALFSKD-SWLLTDVKRTDLSYDEVKLEHLDEDVWRSSLTPDKLSVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++  L+       N   +    Y     +++ Q +   +  L+++          
Sbjct: 239 KPEALSIRGLM-GYLEYLNSNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGPLRTV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  + +    SF +       +  + + P Y+  +   L      F  + +
Sbjct: 298 TMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAMAPSLLFTGVAFYFIRR 352


>gi|153001631|ref|YP_001367312.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
 gi|151366249|gb|ABS09249.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
          Length = 370

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/371 (16%), Positives = 139/371 (37%), Gaps = 25/371 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  +P ++ 
Sbjct: 2   IVFKYLIREVLKAQIAVLLVLLTIFISQHFVRILADASDGDFPASLIMTLIGLNLPYLVI 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M    E++++   G S   + +  L LA++  +F       + 
Sbjct: 62  LVLPLSLFLGILLAHGRMYSENEMVVLHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-----D 177
           P       Q+  KAQ     + L +  F    +   +   +    +       V      
Sbjct: 122 PWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELDKVFVAQLPDP 181

Query: 178 SRDTQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             +T    +  A+ G +  D    Q + LNDG  ++ SP +KD  +++F  Y +Q +   
Sbjct: 182 DDETGVTNVVVAKGGRVQEDSTGAQQLNLNDGVRYQGSPKAKDYQMIEFGGYKMQIKEQQ 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +   +  L+                  +EFH RL   L   I  LI++  A 
Sbjct: 242 VDERRRKLSALPVDELV----------KIEGAEAVAEFHWRLAIPLAIPIMTLIAVPLA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +F ++ +  G F         +     P Y+ + ++ +  +    LL
Sbjct: 291 --RVNVRQGKFAKMFPAVLLYLGYFGLMVAGRKALQDGIIPLYLGMWWIHISALLMGLLL 348

Query: 353 MIKKK--YTKI 361
           + K +  +++I
Sbjct: 349 LGKDRPIFSRI 359


>gi|119471263|ref|ZP_01613766.1| hypothetical protein ATW7_11365 [Alteromonadales bacterium TW-7]
 gi|119445729|gb|EAW27012.1| hypothetical protein ATW7_11365 [Alteromonadales bacterium TW-7]
          Length = 370

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 126/365 (34%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   + +S +   L ++ I    +++  +   S  +    ++L +    +P +  
Sbjct: 2   LIFRYLTAEVLKSQVAVFLTLMTIFLSQKLVVILGDASEGSIPAQLVLSMIALKLPQLAS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +  ++E+ ++   G S   +++  L  +  L++        + 
Sbjct: 62  LILPLSIFLGIILAYSRIYADSEMTVLKACGVSEWYVVRVTLISSAGLALLAGALTMYLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       QL  +A+     S L    F    ++  +       N   +   +  ++   
Sbjct: 122 PWASEQEYQLKEQAKADAGLSALRAGRFQETGNEKAVVFIHNIENGGKELNKVFVAQLPN 181

Query: 183 THKIYYAQ--------SGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +     A+                Q ++L DG+ +     +  +++ +F  Y++Q     
Sbjct: 182 SDNDELARLVYAEQGVVIEAQNGEQQLVLTDGKRYETDATTPALNLTEFDGYSVQIREQE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K      + LL                  +++  R+   L   +  L+++    
Sbjct: 242 IEHQRRKLEAVPTNQLL----------AINTPESIAQWQWRIAIPLSIPLLTLLAVPL-- 289

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +  ++S+  G F   +     I   + P  I + ++ L  +    LL
Sbjct: 290 -SVVNPRQGKFAKLVPAISLYLGYFILLNAAKFAIEDGKIPPSIGLWWIHLSALFIGGLL 348

Query: 353 MIKKK 357
           +IK +
Sbjct: 349 IIKGR 353


>gi|113971160|ref|YP_734953.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-4]
 gi|113885844|gb|ABI39896.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-4]
          Length = 352

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 117/355 (32%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ LV   + S+        +L+P  
Sbjct: 1   MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGSYSMMDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P             +L+           +  D DL++ I +    + L  I +     
Sbjct: 121 GAPVAEQK-ANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGEVADIDKLNNITLYKFNS 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++       ++ D +    S     +  +    +         S + +
Sbjct: 180 ELKLTNVVHAKSALFSKDSWHLM-DVKRTDLSYEEVKLEHLDEDIWRSSLTPDKLSVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++  L+    +      +    Y     +++ Q +   +  L+++          
Sbjct: 239 KPEALSIRGLM-GYLDYLKNNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGPLRTV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  + +    SF +       +  + + P Y+  +   L      F  + +
Sbjct: 298 TMGARVLLGVVAGFSFYISNEIFGPMSMVYELPAYVGAIAPSLLFTGIAFYFIRR 352


>gi|284929475|ref|YP_003421997.1| putative permease [cyanobacterium UCYN-A]
 gi|284809919|gb|ADB95616.1| predicted permease [cyanobacterium UCYN-A]
          Length = 382

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 123/363 (33%), Gaps = 20/363 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + Y+   +   FL        +   +  +   +  V+ S   L +  +I    IP 
Sbjct: 8   LSVVDRYLFLELLSPFLFGMGIFTSLGLSIGTLFDLVRRVTESGLVLTVAFQILLLKIPG 67

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L +  P    +      + ++ ++E++ + + G     L+ PV+    +++   F+  +
Sbjct: 68  FLSLAFPMAILLAALMAYSRLSSDSEIIALRSLGVGIYRLVIPVVIFGFIVTGCAFVVND 127

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL------------YIKISKYNPN 167
            I P        +  +A       +   N+ +     +             +  ++    
Sbjct: 128 WIAPAATHKAAIILEEAVSQKRPDFKRHNIVYPEYKTVKGKNGQESTMLTRLFHAEEYNG 187

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             ++G+ I+D      ++I  ++S + ++        +G ++  +P     +I++F+   
Sbjct: 188 EEMKGLTILDRTQEGVNQIVTSESATWNISSNTWDFFNGTIYLIAPDGSYRNIVRFQHQQ 247

Query: 228 LQTE--SANSSTIVLKANDQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFPVI 284
           L       + +       +  +S           +   + +   +    ++       +I
Sbjct: 248 LALPRAPLDLADRRQNFTEMTISETREYLKAVQFSGNEKRIRKVKVRLQEKYAMPFVCLI 307

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           FGL+      K     +        + + + FG ++  +++   +       P L  +L 
Sbjct: 308 FGLVGASIGVKPQNTNR---ATSFGVCVGLIFG-YYILAFMSTSLGIWGILTPFLGAWLP 363

Query: 345 CIS 347
            I 
Sbjct: 364 NIV 366


>gi|220916596|ref|YP_002491900.1| permease YjgP/YjgQ family protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954450|gb|ACL64834.1| permease YjgP/YjgQ family protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 371

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/369 (15%), Positives = 133/369 (36%), Gaps = 17/369 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R I   F  + LF+  I    QIL + +++  S  SL  +  +   L+P +
Sbjct: 1   MGLIDRYLAREILLPFAAALLFLTQILLATQILGQADVLFGSGVSLVDVGLVMLSLMPHL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P  F +     +  +  + E++ +   G S + L++  L L ++++         
Sbjct: 61  LGYVIPVAFLLGVVLGVGRLAEDREVVALGAAGLSPVRLVRVPLLLGLVVAALGAWLSLS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP      +    +       + +    F+       I   +       + + I D  +
Sbjct: 121 VEPASIRAARLRLNEVVKRNVTNDVRGGTFYDQIPGYTIYA-ERARGGRWENVLIQDRSN 179

Query: 181 TQTHKIYYAQSGSIDL----DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT---ESA 233
                +  +  G ++         ++L  GEVHR+   + D +   F    +      + 
Sbjct: 180 PDAPMLALSHRGRLEPVGAGQDMRLVLEQGEVHREEVGTADYASAAFGKAEILVGLGTAL 239

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSE--FHKRLTQWLFPVIFGLISIV 291
           +   ++ K++ +     L         + +++E  R E   H++L+  L  V F L+ + 
Sbjct: 240 SDRNVLAKSSREATVSDLRARAAAAREKGDVVEARRQEGYLHRKLSAPLVVVAFALLGVP 299

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISS 348
                   R+  +   +  +  +    +    G   +         +   L   +   + 
Sbjct: 300 LG----AERRGGRAFGMGATFLLVVVHYLLLRGGEVLTQLGHLPAAFALQLPNLVLGAAG 355

Query: 349 IFLLMIKKK 357
           I L+++  +
Sbjct: 356 IGLVLLMAR 364


>gi|116624897|ref|YP_827053.1| permease YjgP/YjgQ family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228059|gb|ABJ86768.1| permease YjgP/YjgQ family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 777

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/367 (15%), Positives = 124/367 (33%), Gaps = 17/367 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YIL       ++     V +  +    + IN +  +  SL I+ K   +L P ++ 
Sbjct: 414 LVDTYILSNFVTYLVLMLASFVSLELIRNFFELINDMLRNNISLKIMFKYLFFLSPQLIY 473

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +        M++  E+      G S   L  P+L  ++LLS  LF  +    
Sbjct: 474 QMLPVSILVAVLAAFGVMSKQNEITAFKACGVSLFRLAAPILVGSVLLSGGLFAFDFYYV 533

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI-------FI 175
                    L  + +   T +YL  +  +++  D     +    +N+ +         F 
Sbjct: 534 ANANRIQDALRDQIKGRATQTYLRPDRTWKMGYDSLRIFNYRYFDNSGEESTMSEASVFE 593

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           ++ +  +  +  +A+    +   +  +  DG        + D       +   +      
Sbjct: 594 LEPKTFRLQRQIFARQAHWNASLKTWVFEDGWTCEYKGPNCDAYARFQATTFRELTEPPD 653

Query: 236 STIV--LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +    K    N   L +   +      E     +  F+++ +  LF +I  LI++   
Sbjct: 654 YFLKEARKDEQMNFLQLDSYIKDLTQSGFEGTSKLQVRFYRKFSLPLFALIMALIAVPFG 713

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSI 349
                   R  +  I IS+ I+   +     +  K+       P    +    +F ++  
Sbjct: 714 FLVG---SRGAMTGIGISIGIAVA-YIALGQLFEKVGDVNLLSPATAAWAPDVVFALAGT 769

Query: 350 FLLMIKK 356
           +L +  K
Sbjct: 770 YLFLRMK 776



 Score = 99.7 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 124/376 (32%), Gaps = 29/376 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVS-SSTESLNILLKISGYLIPT 59
           M+    YI R I  S ++  L   FI ++  +     L+  SS+ + N++L++    IP 
Sbjct: 1   MRLLGRYIFREILTSAVLGTLLASFILFLRSVDPIFELLVKSSSANTNLVLQLFALAIPN 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           VLP   PF   +     L  +  + E++ +   G S   +I PVL  A L       +  
Sbjct: 61  VLPFTIPFGVLVGILIGLGRLASDGEIIAMRAAGVSSRKVIFPVLLFAALGGGVAAFATL 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP--NNTLQGIFIVD 177
            + P        +  + +     + +   +F     +  + + +  P   +  + +F+ D
Sbjct: 121 RLTPYSIHKYTDIVNQLEATQLTADVPSRVFVENFPNTILYVGEVKPGNPSVWKNVFVAD 180

Query: 178 SRDTQTHKIYYAQSGS---------------IDLDRQAIILNDGEVHRKSPISKDISIMK 222
               +                          +  +R  + L +   H  S        + 
Sbjct: 181 VAPPEKRSAGMRDKAMGPMITVAEQAIAVPDVTNNRLQLTLRNYSTHEMSKDLSSRDTIA 240

Query: 223 FKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
             +      ++  S   L++       LL                Y+ E HKR    +  
Sbjct: 241 -PTGQQALTASPPSQTPLRSIGMGTRQLLAYP-----RGKPDWVEYQIELHKRFALPVAC 294

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE--QNPYYIPILY 340
           ++  ++ I         R+  +      ++ ++F  ++     +  +   +       L+
Sbjct: 295 IMLAMVGIPLGIA---TRKGGRSAGYVNAIFVAFFCYYMGFVSLIGLARQKTLPVPVALW 351

Query: 341 LFLFCISSIFLLMIKK 356
           L       + ++ + +
Sbjct: 352 LPNAVFFVVGVIFLAR 367


>gi|282901534|ref|ZP_06309456.1| permease YjgP/YjgQ [Cylindrospermopsis raciborskii CS-505]
 gi|281193577|gb|EFA68552.1| permease YjgP/YjgQ [Cylindrospermopsis raciborskii CS-505]
          Length = 388

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/370 (14%), Positives = 130/370 (35%), Gaps = 18/370 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTV 60
              + Y+   +   FL        +   I  + + +  V  S   +NI LK+    +P V
Sbjct: 16  SIMDRYLAMQLLPIFLFGVGAFTSVVLAIDSLFELLRKVVESGLPINIALKVFVLKLPYV 75

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + T    + ++ ++EL+ +   G S   ++   + L+ L++   +I    
Sbjct: 76  MVYSFPMSTLLATLMTYSKLSSDSELIALRGCGVSVYRIVLTAVLLSGLVTGMTYIFNEY 135

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI------------KISKYNPNN 168
           I P           +A  +   S+ ++N+++    +                 +      
Sbjct: 136 ISPAANYEASVTLERALKSDQPSFKQQNIYYPEYREEKTKDGGSSRLLARLFYADEFDGK 195

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            ++G+ I+D      ++I  ++S   +  +Q     +G ++  +P     +I++F+   L
Sbjct: 196 KMKGLTIIDRSQAGVNQIVVSESAQWNAYKQVWDFYNGTIYLVAPDRSYRNILRFEHQQL 255

Query: 229 QTESANSSTIVL--KANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
           Q  S             + N++  L           P+ ++       +++      +IF
Sbjct: 256 QLPSTPLIVAKNSRDYEEMNIAQSLQQLEIEKLAGNPQRIKKLEVRIQQKIAFPFICIIF 315

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           GL+            + +      I + I + +      +      +P+     +L   C
Sbjct: 316 GLVGSAMGTIPQRTGRGRSFGVSIIVIFIYYLLLSVCGALAQAEILSPFVGA--WLPNLC 373

Query: 346 ISSIFLLMIK 355
              + +L++ 
Sbjct: 374 GLGMGILILM 383


>gi|268317250|ref|YP_003290969.1| permease YjgP/YjgQ family protein [Rhodothermus marinus DSM 4252]
 gi|262334784|gb|ACY48581.1| permease YjgP/YjgQ family protein [Rhodothermus marinus DSM 4252]
          Length = 361

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 127/362 (35%), Gaps = 10/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           M   + +I+R +   +L     ++    V+  ++ I+       S+  + L      IP 
Sbjct: 1   MTLIDRHIVRRLLLGYLFFTGALIVFFIVLHYVEYIDDFMDRGASMREVFLVYYPSYIPE 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ + +P    +    V   M +  E++ +  +G S   L++P + LA++++ F+F    
Sbjct: 61  IVRLTSPLALFLACLYVTGRMAQGLEIVALQMSGVSLYRLLRPCVALALIVTGFMFWFNG 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P    T+     K        +   +L  +     ++ +  Y+    +     +   
Sbjct: 121 WVVPVTNRTVVAFDEKYLSKTPRQFDLSHLHRQARPGQFLSVGYYDRERRIAYRIALQQF 180

Query: 180 DTQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDIS-IMKFKSYTLQTESANSS 236
                  Y   +  ++ +   QA ++ +G      P  +++   ++ +   L     + +
Sbjct: 181 AEGRRLAYRLDAPRMEWNDSLQAWVVPEGIARHFEPDGREVRRPVRRQQLDLPLYPRDLA 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +     L                 L      ++ +       +I  LI +  A   
Sbjct: 241 RTEREVEAMTLPDAAAHLAALRRSGAGHLGRPLVAYYSKFAYPFANLILVLIGVPLA--- 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
           ++ R+  +   I I L ++F  +     +I          P+L  +L      +  L+++
Sbjct: 298 SVRRRGGQAVQIGIGLGVAFA-YLALQKLIEPFGYTETLPPLLVAWLPHLVFLAGALVLV 356

Query: 355 KK 356
            +
Sbjct: 357 AR 358


>gi|109899861|ref|YP_663116.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
 gi|109702142|gb|ABG42062.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
          Length = 353

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 130/355 (36%), Gaps = 4/355 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R +  +  MS   +V ++ +I+ ++++  V   +  + +        +P  L
Sbjct: 3   KILDWYIARTLLSTTAMSLGVLVGLSALIKFIEQMKSVGRGSYDMTVAAVYVFLSLPREL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     +  +  N+EL+++ + G SR  +I   +  AIL+ +F+ +    +
Sbjct: 63  EQFFPMATLIGGLIGMGILASNSELVVMQSAGQSRWNIIISAMKSAILMVLFVMVIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   +  K++  +A    +    +  ++ +  D+    I +    +TL+ + I +  + 
Sbjct: 123 APVSETKAKEIRTQAISGGSLFSSDRLVWAKDGDNFVS-IGEVVDKDTLRDVSIYEFDNE 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              +       +   D+    L+  +    S     +      ++           + +K
Sbjct: 182 LYLRQITTAESATYQDKTWE-LSHVQSTEFSDNRIQVQDAADGAWASSLTPDKLGVVTVK 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++  L++   N      +  E YR    +++ Q +   +  L+++           
Sbjct: 241 PEALSIRGLID-YVNYLENNSQNSERYRLALWRKVLQPISVGVMLLMALSFIFGPLRSVT 299

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                 + +     F V       +  +   P +I  + L     + I + ++++
Sbjct: 300 MGARVIMGVLTGFGFFVSNEVFGSLSTVYHIPPFIGAI-LPSVVFTGISIHLLRR 353


>gi|261364966|ref|ZP_05977849.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
 gi|288566764|gb|EFC88324.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
          Length = 356

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/360 (11%), Positives = 123/360 (34%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +I+  +  +   + +   + +     +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGKGSYNGATMAQYVLMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +    ++ ++        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLVLSQFGLIFALATAALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      + + + A      +       +  + +  I + +  P++TL GI I +  D
Sbjct: 121 IAPVLSQKAENIKSTAINGKISTGN--TGLWLKEKNSIINVREMLPDHTLLGIKIWERND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++  +  +  L +      S    ++S    +++ +  +      +++
Sbjct: 179 KNELTQATEAESAVLNNDGSWQLKNIRRSTLSEDKVEVSTAAEENWPIAVKRNLMDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L     ++     +  + Y   + ++L   +   +  L++     +     
Sbjct: 239 KPDQMSVGELT-TYISHLENNNQNTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQTTRHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F           ++   P ++    L     + + + +I+++  +
Sbjct: 298 NMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAG-ALPTIAFALLAVWLIRRQERR 356


>gi|86158887|ref|YP_465672.1| permease YjgP/YjgQ [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775398|gb|ABC82235.1| permease YjgP/YjgQ [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 371

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/369 (15%), Positives = 133/369 (36%), Gaps = 17/369 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R I   F  + LF+  I    QIL + +++  S  SL  +  +   L+P +
Sbjct: 1   MGLIDRYLAREILLPFAAALLFLTQILLATQILGQADVLFGSGVSLVDVGLVMLSLMPHL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P  F +     +  +  + E++ +   G S + L++  L L ++++         
Sbjct: 61  LGYVIPVAFLLGVVLGVGRLAEDREVVALGAAGLSPVRLVRVPLLLGLVVAALGAWLSLS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP      +            + +    F+       I   +       + + I D  +
Sbjct: 121 VEPASIRAARLRLNDVVKRNVTNDVRGGTFYDQIPGYTIYT-ERARGGRWENVLIQDRSN 179

Query: 181 TQTHKIYYAQSGSIDL----DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT---ESA 233
                +  ++ G ++         ++L  GEVHR+   + D +   F    L      + 
Sbjct: 180 PDAPMLALSRRGRLEPVGAGQDMRLVLEQGEVHREEVGTADYASAAFGKAELLVGLGTAL 239

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSE--FHKRLTQWLFPVIFGLISIV 291
           +   ++ K++ +     L         + +++E  R E   H++L+  L  V F L+ + 
Sbjct: 240 SDRNVLAKSSREATVSDLRARAAAAREKGDVVEERRQEGYLHRKLSAPLVVVAFALLGVP 299

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISS 348
                   R+  +   +  +  +    +    G   +         +   L   +   + 
Sbjct: 300 LG----AERRGGRAFGMGATFLLVVVHYLLLRGGEVLTQLGHLPAAFALQLPNLVLGAAG 355

Query: 349 IFLLMIKKK 357
           + L+++  +
Sbjct: 356 VALVLLMAR 364


>gi|332307892|ref|YP_004435743.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175221|gb|AEE24475.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 368

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/367 (13%), Positives = 125/367 (34%), Gaps = 24/367 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++   +S     L ++ I    + ++ ++  S+     +++L      +P +  
Sbjct: 2   LIFRYLVKETVKSQTAVFLVLMAIFITNKFVRVLSEASNGDIPASLVLGFLALSMPVLAS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +  ++E+ ++   G S   + + +L LA+++++        + 
Sbjct: 62  LILPLSLFLGIMLAHGRLYVDSEMTVMRACGISEWYVTRVMLVLAVIMALITGAMTLWVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQGIFIVDS 178
           P       QL  +A      + L    F +  ++       +I   +       +   D+
Sbjct: 122 PMSVEREYQLEEQAGADTGLTTLIPGRFQQTANEKAVIFVHEIGNDSEPLKRVFMAQHDT 181

Query: 179 RDTQTHKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                +             +    + ++L DG  +  +   KD  +++F  Y +Q     
Sbjct: 182 TTDSQNVHLVYAKQGGLRELPDGSETLVLGDGIQYEGTLGEKDYRVVEFGEYQIQIAEQE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +     K +    + L N    +            +E   R    L      +I++    
Sbjct: 242 AEQKRRKLSAYTTAQLFNDPSIDA----------IAELQWRFAIPLSLFFLVIIAVPL-- 289

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLL 352
             A   ++ +   +F +L +    ++       K+ ++    P+  L+     I  I L 
Sbjct: 290 -SAADPRQGRFGKMFPALMLY-LGYFLLLLAGRKVLEDGKIPPMLGLWWVHAVIGVIGLA 347

Query: 353 MIKKKYT 359
           +I K   
Sbjct: 348 LIFKGRP 354


>gi|220932585|ref|YP_002509493.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
 gi|219993895|gb|ACL70498.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
          Length = 365

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/366 (12%), Positives = 117/366 (31%), Gaps = 14/366 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPT 59
           MK    Y+ R +   FL        I     IL  +  + ++       L+++    +P 
Sbjct: 1   MKIIYRYLTRELIMPFLFGVAAFTAIFIGTDILFTLTRLYNNFGVEFTTLVQLFFLKLPP 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    M T      ++ + E+      G S   ++ P L + +++S+   +   
Sbjct: 61  IIVLTFPMATLMGTLMSFGRLSGDGEITAFRAGGVSVYKIVIPSLLVGLIMSVTTIMVNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEE-----NLFFRLDDDLYIKISKYNPNNTLQGIF 174
           ++ P+      Q+  + +        +       L  +     YI  +      T     
Sbjct: 121 MVVPRANYLYDQIVWEIKNGRKMPATQYDLTLTPLDRKYRRPDYILYTHRFNGETGIMND 180

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTES 232
           +      +   +   ++             +G ++      + +  +KF  Y +     +
Sbjct: 181 VYLQDYEKGVPVTLIKARKAVWQGDKWHFYNGNIYYF-KEGERVPALKFNEYVIKQPIYT 239

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                 + K  +      L         + +     R ++H+++       IF L++   
Sbjct: 240 PRRIGKMNKDIEDMSFKELGEYIQFLEEQGKDTFEERVKYHQKIAIPFASFIFALLAAPL 299

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIF 350
             K    R       + +S+ + F +++    +   + +     P    +L  F    + 
Sbjct: 300 GIKPR--RSGGTATGMGLSIIVIF-IYYTIMTLGSALGERGTISPFFGAWLQNFIFLIVG 356

Query: 351 LLMIKK 356
             MI +
Sbjct: 357 GYMIYR 362


>gi|28899416|ref|NP_799021.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839669|ref|ZP_01992336.1| permease YjgP/YjgQ family protein [Vibrio parahaemolyticus AQ3810]
 gi|260363480|ref|ZP_05776316.1| conserved inner membrane protein [Vibrio parahaemolyticus K5030]
 gi|260879349|ref|ZP_05891704.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|260895692|ref|ZP_05904188.1| conserved inner membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|260900264|ref|ZP_05908659.1| conserved inner membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|28807652|dbj|BAC60905.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746812|gb|EDM57800.1| permease YjgP/YjgQ family protein [Vibrio parahaemolyticus AQ3810]
 gi|308087431|gb|EFO37126.1| conserved inner membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|308093069|gb|EFO42764.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|308107540|gb|EFO45080.1| conserved inner membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|308112550|gb|EFO50090.1| conserved inner membrane protein [Vibrio parahaemolyticus K5030]
 gi|328471447|gb|EGF42342.1| lipopolysaccharide ABC transporter permease [Vibrio
           parahaemolyticus 10329]
          Length = 356

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 118/355 (33%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +     V ++ +I+ ++++  V      L   L      +P  +
Sbjct: 3   KILDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGRGVYDLTHALYFVLLSVPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +      L+           +  D + +I I K   +            D 
Sbjct: 123 APEAQ-KMARDLRSFALSGGSIVSVRAGVWARDANDFIFIGKVEDDKLYALNMWRFDDDK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              K+ +A+      D   ++ +    + +         M    +         + + +K
Sbjct: 182 NLEKVIFAEEVDYQQDNNWLMRDVQITNMQDENVISKQEMDQMEWHTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +          +    Y   F ++LTQ L   +  L+++           
Sbjct: 242 PEELSLSGLYD-YVTYLKASEQDASRYELAFWRKLTQPLSIAVMMLMALSFVFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   +  +   P     L   L  ++    L+ +K
Sbjct: 301 MGARVLSGVVAGFTFYISSEFFGPLTLVYGIPPIFGALAPSLAFLAIAVALLRRK 355


>gi|291532164|emb|CBL05277.1| Predicted permeases [Megamonas hypermegale ART12/1]
          Length = 361

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 125/364 (34%), Gaps = 14/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+    +F+        +      +L+    ++    S + ++++  Y +P 
Sbjct: 1   MRILDKYILKETIMTFIFGICAFSAVFLGSGTLLRIAQYITQYGASFSAIVRLIIYSLPG 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++    P    +        ++ N+E++ +   G S   L+ PV+  ++ +SIF      
Sbjct: 61  IIVWTFPMSMLLAALLTFGRLSGNSEIIAMKACGVSFKRLVTPVIAFSLGVSIFSIGFNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK---ISKYNPNNTLQGIFIV 176
            + P        L        T    +E++  +   D  I+    ++     T     + 
Sbjct: 121 YVVPASNQAYADLVRYEIQGNTSPESQEHIIIKQIQDGNIQRLVYARKYDAETGNLDNLS 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                Q   +    +          ++ +G ++  S  + +  +MKF S  L        
Sbjct: 181 IQEFEQGKMVRVENAEYAKWSVDEWVMYNGVLYDLSQPNTE-RMMKFDSQVLPINQTPKQ 239

Query: 237 TI--VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            I    K ++  +  L     N    +    +    E ++R T  +  ++F LI      
Sbjct: 240 IIKSQKKPDEMTIKEL-REQINIMKSQYVDTKKLEIELYQRFTVPMASLMFALIGAPLGI 298

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLL 352
           +              I       +++    +   I QN +  P++ +++         + 
Sbjct: 299 QPNRSSSSIGFGISII----IIFIYYTLMTLAGAIGQNSFIPPVIAVWIPNIVTLIAGIY 354

Query: 353 MIKK 356
           +I+K
Sbjct: 355 LIRK 358


>gi|217077925|ref|YP_002335643.1| putative permease, YjgP/YjgQ family [Thermosipho africanus TCF52B]
 gi|217037780|gb|ACJ76302.1| putative permease, YjgP/YjgQ family [Thermosipho africanus TCF52B]
          Length = 1110

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/354 (16%), Positives = 118/354 (33%), Gaps = 5/354 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL+     FLM     +  A V  + Q  +++      +  L ++  Y +P  
Sbjct: 1   MKVLTKYILKLSLGPFLMGIGAFIVFASVELLYQLSDIIVRHRVGILKLFELIYYNLPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +  P         VL+ +  + E+      G     L+ P L L+I+     F   + 
Sbjct: 61  ASLGIPVGILFSIFWVLSQLYSSKEITAFLVHGIPSRKLVYPFLILSIIFGAVSFYLNDQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I PK      +  +K         ++EN+  ++D+  Y  + +Y+    +    ++    
Sbjct: 121 IVPKFNQKAMETISKYVYKKPEVTIKENVLTKIDESQYFFVKRYDQQQGILYDVVLFQNM 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
               +I  A+   ++ +  +  L +G+++           + F    L  +    +   +
Sbjct: 181 QSEERIITAKK--VEKEENSWYLINGKMYVTDRDGFMKLDLSFSKIKLDLKDDLESLMRV 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                D     L+                +  E H R    + P I  ++ +  +    L
Sbjct: 239 GKSPRDMTGEELIQKIKTFKKL-GVDPSPWIVELHGRYANSVGPFIIVILGVPLSLLFGL 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
             +   +   F+ + +  G     S +  +   NP         LF I    L 
Sbjct: 298 KSKSWSVIFTFVIVVLYQGSGAWLSAMGKENLINPVLAAWYPDLLFAIVGFILF 351


>gi|113474402|ref|YP_720463.1| permease YjgP/YjgQ [Trichodesmium erythraeum IMS101]
 gi|110165450|gb|ABG49990.1| permease YjgP/YjgQ [Trichodesmium erythraeum IMS101]
          Length = 392

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 136/373 (36%), Gaps = 21/373 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + YI+  +   FL        +   V  + + +  V+ S   ++I +++    +P  
Sbjct: 20  SVMDRYIIAELIGPFLFGVGLFSSLGITVGAMFELVRKVTESGLPISIAIQVFLLKMPEF 79

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T  V + M+ ++E++ + + G S   +I P + L++ ++   F    I
Sbjct: 80  IGLAFPMAMILTTLMVYSQMSGHSEIVALRSCGISIYRMIIPTIILSLTVTTLSFALNEI 139

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI------------KISKYNPNN 168
           I P        +  K        + EEN+F+     +                ++     
Sbjct: 140 IVPSANYQASLILEKTLEQENPPFKEENIFYPEFGKVKQPDGSQDDTLTRLFYAEKFDGK 199

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            +QG+ I+D       +I  ++S + +       L +G ++  SP     +I+KF    L
Sbjct: 200 YMQGVTILDRSQYGVDQIVSSESATWNSAENIWDLFNGTIYLVSPDGSYRNIVKFDHKKL 259

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETY---RSEFHKRLTQWLFPVIF 285
           +  +A       +   + ++   +                   +    ++L      ++ 
Sbjct: 260 KLSTAPLDLAGKRRTYKQMNISQSYEYLELMRLSGNYRKVVKTQVRIQQKLALPFVCLVM 319

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFL 343
           GL+      +    R+  +     IS+ I F  ++  S+I   + Q     P L  +L  
Sbjct: 320 GLVGAALGIRP--QRKANRGTSFGISVIIIFA-YYLLSFITGAMGQKEILTPFLAGWLPN 376

Query: 344 FCISSIFLLMIKK 356
           F    + + ++ +
Sbjct: 377 FLGLGVAVFLLAR 389


>gi|160902798|ref|YP_001568379.1| permease YjgP/YjgQ family protein [Petrotoga mobilis SJ95]
 gi|160360442|gb|ABX32056.1| permease YjgP/YjgQ family protein [Petrotoga mobilis SJ95]
          Length = 1153

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 124/355 (34%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+ +     F M  +  +    +  + Q   ++  +    + LL +  Y +P  
Sbjct: 1   MKKLFKYVSKEFIPPFFMGLIAFIVFVSLELLYQLSEIIVRNNVGFSKLLILIWYHLPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P         V++ ++   E++ +   G     LI P + +++LLS F F   N 
Sbjct: 61  ISMGIPVGVLFGIFWVISKLSSANEIIALQTLGIPMKKLIIPFMTISLLLSFFTFALFNT 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      K+  A        + +EEN F  + D  Y+ + + +  + +    ++    
Sbjct: 121 IVPVSNYKAKEAMALYVYQRPQAQIEENQFVDVGDGRYLFVKQIDRESGILYDVLLYEVK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                ++ AQ            + +G + R +        + F    L  +      +  
Sbjct: 181 NDYTAVFNAQQAQ--KGPDGWYMKNGRMFRTNEDGFLDLDITFDQLQLDIQEDVEEFLNF 238

Query: 241 -KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            K+ ++  S  L       +     +      +  +    L P++  ++ I  +    L 
Sbjct: 239 SKSANEMTSKELKEKITTFSKLGLDVSGLIVSYQSKFANSLAPLVICILGIALSLFLNLT 298

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            +   +   F+ + I  G     S +  +   NP     +   +F I   FL ++
Sbjct: 299 SKSWSVITTFVLVIIYQGSGAWLSALGKEHIINPTISVWIPNIIFGIIGTFLFLM 353


>gi|254432417|ref|ZP_05046120.1| unclassified ABC-type transport system permease [Cyanobium sp. PCC
           7001]
 gi|197626870|gb|EDY39429.1| unclassified ABC-type transport system permease [Cyanobium sp. PCC
           7001]
          Length = 386

 Score =  120 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 47/376 (12%), Positives = 130/376 (34%), Gaps = 21/376 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  +    +        ++  V  + + +  V+ S   L++ L++    +P+ L
Sbjct: 14  LLDRWMLGELIGPLVFGVAAFTAVSLSVGAVFELVRRVAESGLPLDVALQVLLLELPSFL 73

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M T    + ++ N+EL  + + G     ++ P + LA+ +++  F     +
Sbjct: 74  VLSFPMATLMATLLTYSKLSGNSELTALRSVGVPTWRMLVPAVVLAVAMTMLTFGFNEAV 133

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL------------YIKISKYNPNNT 169
            P   S  +   ++A          +N+ +     +            +I  ++      
Sbjct: 134 VPSTLSQAEATLSRAIGRAVAGEQRDNVVYSKYGRVELPDGSTERGLTHIFYAQRFNKGV 193

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTL 228
           ++ + ++D   +    +  A               DG+V    S  S+ I+  +F  Y  
Sbjct: 194 MEDVTLLDLSRSAHRVMLTADRARWSSRDAQWEFLDGQVVGIGSSGSEAITSARFDRYLY 253

Query: 229 QTESANSS--TIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLFPVIF 285
              +       +   AN+ ++                      R    ++ +     ++F
Sbjct: 254 PLGNQPLKVAKLPKDANEMSIGQARTAERLLRESGDLRAARKLRVRIQEKFSFPAVCLVF 313

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           GLI      +    R R +   + + L      ++  ++    +       P+L  ++  
Sbjct: 314 GLIGSSLGARPHSRRSRSQGFGLTVLLIFG---YYLVAFSFSSLGVKGTLTPLLSAWMPV 370

Query: 346 ISSIF-LLMIKKKYTK 360
           +  +   L++ ++ ++
Sbjct: 371 LIGLGTGLVLVRQASR 386


>gi|307154796|ref|YP_003890180.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
 gi|306985024|gb|ADN16905.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
          Length = 388

 Score =  120 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 131/365 (35%), Gaps = 20/365 (5%)

Query: 5   ELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           + Y+   +   FL        +   +  +   +  V+ S  S++I L+I    +P  + +
Sbjct: 20  DSYVFMELFIPFLFGMGLFTSLGIAIGTLFDIVRKVTESGLSISIALQILMLKMPEFVVL 79

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    + T    + +  ++EL+   + G S   L+ P L L+++++   F   + + P
Sbjct: 80  AFPMSILLATLMGYSRLASDSELIAFRSIGISPYRLLVPSLILSLMVTGTTFFFSDYVAP 139

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI------------KISKYNPNNTLQ 171
           +     K + A A        +E+N+ +     +                ++      +Q
Sbjct: 140 QATQQAKSILADALKQDKPLQVEDNIIYPEYKKITQDNGRDQTILTRLFYAEKFDGQQMQ 199

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           G+ I+D      ++I  +QS   ++D+ +    +G ++  +P     +I++F+   L   
Sbjct: 200 GLTILDRSQPGVNQIVTSQSAIWNVDQNSWDFYNGTIYLIAPDGSYRNIVRFEHQQLDLP 259

Query: 232 SANSSTIVLK--ANDQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
            A       K    D +++           +   +          ++       ++FGLI
Sbjct: 260 RAPLDIAKRKQNPADMSIAEAKEYLKIVKLSKNDQRARKVEVRIQEKYALPFVCIVFGLI 319

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
                 K        K     + + + F  ++  S+I   +       P +  +L  I  
Sbjct: 320 GSAIGLKPQNT---NKATSFGVCIVLIFS-YYLLSFITSSMGIWGIVTPTVSAWLPNILG 375

Query: 349 IFLLM 353
           +   M
Sbjct: 376 LLAAM 380


>gi|197121803|ref|YP_002133754.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. K]
 gi|196171652|gb|ACG72625.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. K]
          Length = 371

 Score =  120 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/369 (15%), Positives = 133/369 (36%), Gaps = 17/369 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R I   F  + LF+  I    QIL + +++  S  SL  +  +   L+P +
Sbjct: 1   MGLIDRYLAREILLPFAAALLFLTQILLATQILGQADVLFGSGVSLVDVGLVMLSLMPHL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P  F +     +  +  + E++ +   G S + L++  L L ++++         
Sbjct: 61  LGYVIPVAFLLGVVLGVGRLAEDREVVALGAAGLSPVRLVRVPLLLGLVVAALGAWLSLS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP      +    +       + +    F+       I   +       + + I D  +
Sbjct: 121 VEPASIRAARLRLNEVVKRNVTNDVRGGTFYDQIPGYTIYA-ERARGGRWENVLIQDRSN 179

Query: 181 TQTHKIYYAQSGSIDL----DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT---ESA 233
                +  ++ G ++         ++L  GEVHR+   + D +   F    L      + 
Sbjct: 180 PDAPMLALSRHGRLEPVGAGQDMRLVLEQGEVHREEVGTADYASAAFGKAELLVGLGTAL 239

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSE--FHKRLTQWLFPVIFGLISIV 291
           +   ++ K++ +     L         + +++E  R E   H++L+  L  V F L+ + 
Sbjct: 240 SDRNVLAKSSREATVSDLRARAAAAREKGDVVEARRQEGYLHRKLSAPLVVVAFALLGVP 299

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISS 348
                   R+  +   +  +  +    +    G   +         +   L   +     
Sbjct: 300 LG----AERRGGRAFGMGATFLLVVVHYLLLRGGEVLTQLGHLPAAFALQLPNLVLGAVG 355

Query: 349 IFLLMIKKK 357
           + L+++  +
Sbjct: 356 VGLVLLMAR 364


>gi|332307891|ref|YP_004435742.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175220|gb|AEE24474.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 353

 Score =  120 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 130/355 (36%), Gaps = 4/355 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R +  +  MS   +V ++ +I+ ++++  V   +  + +        +P  L
Sbjct: 3   KILDWYIARTLLSTTAMSLGVLVGLSALIKFIEQMKSVGRGSYDMTVAAVYVFLSLPREL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     +  +  N+EL+++ + G SR  +I   +  AIL+ +F+ +    +
Sbjct: 63  EQFFPMATLIGGLIGMGILASNSELVVMQSAGQSRWNIIISAMKSAILMVLFVMVIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   +  K++  +A    +    +  ++ +  D+    I +    N L+ + I +  + 
Sbjct: 123 APISETKAKEIRTQAISGGSLFSSDRLVWAKDGDNFVS-IGEVVDKNNLRDVSIYEFDND 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              +       + +    +  L+  +    S     +      +++          + +K
Sbjct: 182 LYLRKITTAEAA-NYQSDSWELSHVQSTEFSDNRIHVEDAADGAWSSSLTPDKLGVVTVK 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++  L++   N      +  E YR    +++ Q +   +  L+++           
Sbjct: 241 PEALSIRGLID-YVNYLENNSQNSERYRLALWRKVLQPISVGVMLLMALSFIFGPLRSVT 299

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                 + +     F V       +  +   P +I  + L     + I + ++++
Sbjct: 300 MGARVIMGVLTGFGFFVSNEVFGSLSTVYHIPPFIGAI-LPSIVFTGISIHLLRR 353


>gi|126175308|ref|YP_001051457.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
 gi|153001630|ref|YP_001367311.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
 gi|217972441|ref|YP_002357192.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
 gi|125998513|gb|ABN62588.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
 gi|151366248|gb|ABS09248.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
 gi|217497576|gb|ACK45769.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
          Length = 352

 Score =  120 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 118/355 (33%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ LV   T S+        +L+P  
Sbjct: 1   MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGTYSMMDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + + +    
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITMSAMKTAVPLMLLVMVLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P             +L+           +  D DL++ I +    N L  I +     
Sbjct: 121 GAPIAEQK-ANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGEVENINKLNNITLYKFNS 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++        L D +    S     +  ++   +         S + +
Sbjct: 180 ELKLTNVVHADRAVFSQD-RWRLFDVKRTDLSYEKVVLEYLEEDQWQSSLTPDKLSVVSI 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++  L+    +      +    Y     +++ Q +   +  L+++          
Sbjct: 239 KPEALSIRGLV-GYLDYLKTNSQDPSRYELALWRKVMQPVTVAVMMLVALSFVFGPLRTV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  + +    SF +       +  + + P Y+  +   L      F  + +
Sbjct: 298 TMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAVAPSLLFTGVAFYFIRR 352


>gi|315125734|ref|YP_004067737.1| hypothetical protein PSM_A0636 [Pseudoalteromonas sp. SM9913]
 gi|315014248|gb|ADT67586.1| hypothetical protein PSM_A0636 [Pseudoalteromonas sp. SM9913]
          Length = 355

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 127/356 (35%), Gaps = 3/356 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+ R I ++   + + +V I+ +I+ ++++  V   +  +   +  + Y IP  
Sbjct: 2   MKTLDWYLGRSILQTTGFALMVLVGISTLIKFIEQLKSVGRGSYDIMTAMLYTIYSIPDD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +     L ++  N+EL+++   G SR+ +I  V+  AI +++ +      
Sbjct: 62  LVVFFPMAALIGGLTGLGALASNSELVVMQAAGMSRLQIIGSVMKTAIFMALCVMALGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P  +    +      +     +  +   +  D + +I I   + N  L+G+ +     
Sbjct: 122 GAPAAQL-HAKEMRNQAIHGGDVFNAQKGVWAKDANNFINIEDVDQNGMLRGVNMYHFDK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           + +         ++  D    +L D      S        +  + Y  Q  +     + +
Sbjct: 181 SLSLTQITKAKEAVGRD-SGWLLRDVNKVMISEELITTEQVSEEFYPSQLTAEKLGVVSV 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    + S L            +   TY     ++L Q +   +  L+++          
Sbjct: 240 KPESLSFSGL-WSYLAYLQQNEQDTSTYDLALWRKLMQPVSIAVMLLVALSFIFGPLRTV 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  + +   I F +       +  + Q P  I  +   +        LM K+
Sbjct: 299 TMGARIIMGVVTGIVFHLTNEIFGPVVMVYQIPAIIGAVLPSILFTGFAAYLMNKR 354


>gi|295132762|ref|YP_003583438.1| permease [Zunongwangia profunda SM-A87]
 gi|294980777|gb|ADF51242.1| predicted permease [Zunongwangia profunda SM-A87]
          Length = 358

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 124/361 (34%), Gaps = 7/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F M  L  + I   + + ++I+ +  +      + +         
Sbjct: 1   MKILDWYILKRYLGTFSMMLLLFIPIGITVNLAEKIDKILENEVPFVEVAEYYLNFTIYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++   ++G S    ++P +  A ++ I        
Sbjct: 61  ANLLFPLFLFLSIIWFTSKLANNTEVIAFLSSGVSFYRFLRPYIIGATIVCIAALGLSMF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + PK      +   +       +   ++++ +++D+  I  S + P       F I    
Sbjct: 121 LAPKASKGFNEFKYEYLKRGHETQETKDVYRQVNDNEVIYASHFRPKTHTANNFVIEHFE 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             Q      A     + +     L + +          +S        L  E    +   
Sbjct: 181 GNQLKFKISASRLKFNTEDSTYTLTNVDKRIIGENGDIMSNQAKLDTILPFEFDELTPET 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             A   + S L              +  Y    +KR++  +   I  +I++      ++ 
Sbjct: 241 YIAETLSFSELNEFIKKESRRGSGNMNMYLVAAYKRVSIPVSAFILTIIAVAV---SSMK 297

Query: 300 RQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R+      + + +S++F   +    F  I  +   +P     +    F I ++FLL+  K
Sbjct: 298 RRGGMGVNLAVGISLAFIFIFFDKVFGTIAEQSTFSPLLAVWIPNISFGILAVFLLLKAK 357

Query: 357 K 357
           +
Sbjct: 358 R 358


>gi|304410147|ref|ZP_07391766.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
 gi|307302142|ref|ZP_07581900.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
 gi|304351556|gb|EFM15955.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
 gi|306914180|gb|EFN44601.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
          Length = 352

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 118/355 (33%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ LV   T S+        +L+P  
Sbjct: 1   MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGTYSMMDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + + +    
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITMSAMKTAVPLMLLVMVLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P             +L+           +  D DL++ I +    + L  I +     
Sbjct: 121 GAPIAEQK-ANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGEVENISKLNNITLYKFNS 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++        L D +    S     +  ++   +         S + +
Sbjct: 180 ELKLTNVVHADRAVFSQD-RWRLFDVKRTDLSYEKVVLEYLEEDQWQSSLTPDKLSVVSI 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++  L+    +      +    Y     +++ Q +   +  L+++          
Sbjct: 239 KPEALSIRGLV-GYLDYLKTNSQDPSRYELALWRKVMQPVTVAVMMLVALSFVFGPLRTV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  + +    SF +       +  + + P Y+  +   L      F  + +
Sbjct: 298 TMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAVAPSLLFTGVAFYFIRR 352


>gi|323436074|ref|ZP_01050240.2| predicted permease YjgP/YjgQ family [Dokdonia donghaensis MED134]
 gi|321496389|gb|EAQ39255.2| predicted permease YjgP/YjgQ family [Dokdonia donghaensis MED134]
          Length = 358

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 124/362 (34%), Gaps = 9/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI++    +F+   +  + I  ++ + ++I+ + ++      +           
Sbjct: 1   MKILDWYIVKRYIGTFVTMLVLFIPIGIIVNLAEKIDKILANEVPFGEVALYYLNFTIYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++   ++G S    ++P L  A ++    F+    
Sbjct: 61  ANLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGVSFTRFLRPYLIGATVVCAGAFVMGTY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+      +   +            +++ ++D   YI  S +NP       F  +  +
Sbjct: 121 LAPRANKGYNEFIFEYLKKKKNDRDTRDVYRQIDAGDYIYASSFNPRTKRGRNFTWEHFE 180

Query: 181 TQTHKIYYAQS-GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                   + +    + +     L   +          +        T   +  + + + 
Sbjct: 181 GNKMTYKMSATQIRFNEEDTTYTLYGFKKRIIGEDGDVLIKQAKIDTTFAFDIDDLTPVE 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             A   N   L              +  Y     KR +  +   I  +I++      A+ 
Sbjct: 241 YIAETLNTPELREFIAKEKARGSSYISRYEVTLQKRYSLPVAAYILTIIAVAV---SAMK 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMIK 355
           R+      +   + ++F VF  F  +   + +   + P++ ++    LF I + +LL   
Sbjct: 298 RRGGMGINLAFGIVLAF-VFIFFDKVFGTLAEQSDFPPLVAVWTPNILFAILAAYLLQNA 356

Query: 356 KK 357
           K+
Sbjct: 357 KR 358


>gi|160876366|ref|YP_001555682.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
 gi|160861888|gb|ABX50422.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
 gi|315268556|gb|ADT95409.1| permease YjgP/YjgQ family protein [Shewanella baltica OS678]
          Length = 352

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 118/355 (33%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ LV   T S+        +L+P  
Sbjct: 1   MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGTYSMMDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + + +    
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITMSAMKTAVPLMLLVMVLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P             +L+           +  D DL++ I +    N L  I +     
Sbjct: 121 GAPIAEQK-ANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGEVENINKLNNITLYKFNS 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++        L D +    S     +  ++   +         S + +
Sbjct: 180 ELKLTNVVHADRAVFSQD-RWRLFDVKSTDLSYEKVVLEYLEEDQWQSSLTPDKLSVVSI 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++  L+    +      +    Y     +++ Q +   +  L+++          
Sbjct: 239 KPEALSIRGLV-GYLDYLKTNSQDPSRYELALWRKVMQPVTVAVMMLVALSFVFGPLRTV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  + +    SF +       +  + + P Y+  +   L      F  + +
Sbjct: 298 TMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAVAPSLLFTGVAFYFIRR 352


>gi|254229297|ref|ZP_04922715.1| putative permease, YjgP/YjgQ family [Vibrio sp. Ex25]
 gi|262393203|ref|YP_003285057.1| hypothetical protein VEA_002430 [Vibrio sp. Ex25]
 gi|151938221|gb|EDN57061.1| putative permease, YjgP/YjgQ family [Vibrio sp. Ex25]
 gi|262336797|gb|ACY50592.1| putative membrane protein [Vibrio sp. Ex25]
          Length = 356

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 119/355 (33%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +     V ++ +I+ ++++  V      L   L      +P  +
Sbjct: 3   KILDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGRGVYDLTHALYFVLLSVPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +      ++        +  +  D + +I I K   +            D 
Sbjct: 123 APEAQ-KMARDLRSFAISGGSIVSVRSGVWARDANDFIFIGKVEDDKLYALNMWRFDDDK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              K+ +A+      D   ++ +      K+        ++   +         + + +K
Sbjct: 182 NLQKVIFAEEVDYQQDNNWLMRDVQITDMKNENVISKQDIEQMEWHTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +          +    Y   F ++LTQ L   +  L+++           
Sbjct: 242 PEELSLSGLYD-YVTYLKASEQDASRYELAFWRKLTQPLSIAVMMLMALSFVFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   +  +         L   L  ++    L+ +K
Sbjct: 301 MGARVLSGVVAGFTFYISSEFFGPLSLVYGISPVFGALAPSLVFLAIAIALLRRK 355


>gi|78486088|ref|YP_392013.1| permease YjgP/YjgQ [Thiomicrospira crunogena XCL-2]
 gi|78364374|gb|ABB42339.1| YjgP/YjgQ family protein [Thiomicrospira crunogena XCL-2]
          Length = 369

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/356 (11%), Positives = 121/356 (33%), Gaps = 16/356 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+ + +  +F      ++ I +  +  + + +         +++++  Y IP  
Sbjct: 1   MRILDKYLYKELFATFFAVLSVLLLITFGTEATKLLAVAVEGAIPSTVIMQVLLYKIPPA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     +  + ++ E++++ + G +     K V +  + L+        +
Sbjct: 61  LEVILPLVALLSVMLAVGRLYQDQEMVVLQSCGIATSFFQKRVFWFLVPLAFLTAWVSLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      ++L  +AQ     + L    F  L +   I  ++   +N       V    
Sbjct: 121 VTPWSYEQERKLIMEAQTTSPLAALVPGKFNPLPNGEGIFYTRSIKSNGDLESVWVRLNT 180

Query: 181 TQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   +  A  G       +  ++L +G  +       D ++ +F  +        S++ 
Sbjct: 181 DERDILLMAPKGKFEWINGKLVLVLLNGRSYEGLKKGDDFTVREFDRFEGFLPEIQSTST 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +  +   S L   +             + +    R+      ++ GL+ +        
Sbjct: 241 AQQVFEIPTSTLWQSDK----------PEHEALLQWRIVTPFSILVLGLLGL---KMSKS 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +  +   +F +L +   ++        +   N    P + L+   +  +   + 
Sbjct: 288 GPREGRFAKVFFALVLYV-IYNQLLVTFRESISNEALSPWVGLWPIPVVFLMYALY 342


>gi|114562104|ref|YP_749617.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
           400]
 gi|114333397|gb|ABI70779.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
           400]
          Length = 352

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 125/356 (35%), Gaps = 4/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  +LYI R I  +  +  L +  ++ +I+ + ++ LV     ++        +L+P  
Sbjct: 1   MRILDLYIARMIVSTSSLCLLILTGLSGIIKWVDQLRLVGRGAYTMLDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ + +  +  AI L I +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQVSGMSRLQITQSAMKTAIPLMIMVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P       +     +++           +  D DL++ I +    NTL  I + +  D
Sbjct: 121 GAPIA-EKSAKELQATKISGGSLIKSHRGIWAKDGDLFVNIGEVQDVNTLSNISLYEFND 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q        + ++ +D     L+  E             +    +         S + +
Sbjct: 180 QQELTRVTHANTAVFVDDVWQ-LSVVENTTVKDDRVIRDHLDTDVWQSSLTPDKLSVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++S L++   +      +    Y     +++ Q +   +  L+++          
Sbjct: 239 KPEALSISGLID-YLDYLKVNQQDPSRYELALWRKVMQPVTVAVMMLVALSFVFGPLRTV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  + +    SF +       +  + + P  +  +       + + L  I+K
Sbjct: 298 TMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAVVGAIA-PSMLFTGLALYYIRK 352


>gi|300770003|ref|ZP_07079882.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300762479|gb|EFK59296.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 359

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 117/357 (32%), Gaps = 3/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           MK  + YI++    +F+ +      +  +  + ++++        ++ I+ +     IP 
Sbjct: 1   MKIIDWYIIKKYLSTFVFTMAIFTVVMVIFDVSEKLDNFLQYKAPISKIVFQYYAGFIPF 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L  ++P    +      + M   TE++ I + G S   +++P +  A L+    F+   
Sbjct: 61  YLNFLSPLINFIAVIFFTSKMADQTEIVPILSGGMSFNRMLRPYMIAASLIFAVTFVFNI 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDS 178
            I P+                           ++D + Y+ I  ++    +   F+    
Sbjct: 121 YIIPRTNKMKVSFENVYVKPDKAGGSISATHMQIDSNTYVYIDNFDTRQKIGYNFVLEKF 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              +  +   A     D       + +      + +++ +     K  TL  + ++    
Sbjct: 181 DADRLKEKMIADRIRWDSVATKWKIENYTNRVINGLNERMEKADQKDTTLDMKPSDFEKY 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                  N   L             ++     E +KR        I  L+ +  + K  +
Sbjct: 241 DNMFTAMNTDELSKRIDKEETRGTGMMTELLLEKYKRYIYPFSAFILTLMGVSLSSK-KV 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                    + I+LS  + V   FS +       P  I ++   L  +S    LM K
Sbjct: 300 RGGIGLSLGLGIALSFVYIVLIQFSTMFSLKGGLPPLIAVMIPNLIFLSLGLYLMYK 356


>gi|322435367|ref|YP_004217579.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163094|gb|ADW68799.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX9]
          Length = 813

 Score =  119 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 55/377 (14%), Positives = 143/377 (37%), Gaps = 21/377 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    YILR +    L+  +   F+ +  ++ + + +V  ++ SL+ + ++  Y +P  
Sbjct: 1   MRLLTRYILREVLSHALLGGVLFTFVLFTSRLGKILEIVVRNSASLSDVARLIAYFLPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +     L+ +  ++E+  +  +G   +  ++ V  ++I        +   
Sbjct: 61  LIVTIPMAVLVGILLGLSRLAADSEITAMRASGMGALDFVRIVSLVSIGALALGLFNSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN---TLQGIFIVD 177
           + P+  + +  L    + +     +E  +F     ++ + +    P +     + +F+ D
Sbjct: 121 LAPRSAANLLALENSLKYSQASFEVEPRVFDEDFKNIVLYVQDVRPGSGAALWRHVFVAD 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAII---LNDGEVHRKSPIS-KDISIMKFKSYTLQTESA 233
             +    KI  A    +       +   L DG  H+ SP      +I  F+   +  ++ 
Sbjct: 181 LTEPSAPKITTADQALVTSAGPGNLNLHLTDGAQHQISPTDANQYNISTFQVTDIPMQTG 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNN---------PNYRPELLETYRSEFHKRLTQWLFPVI 284
                 L  +D  +  L  P             P +       Y+ E +KR +     ++
Sbjct: 241 AQEDAHLSRSDTPILALSLPELIQRGNQAAAPGPKHDVRAARLYKIELNKRFSYPFACLV 300

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
             L+ +         ++  K     +++ + F V++  S +   +       P+L ++  
Sbjct: 301 LMLVGVPLGLS---SKRGGKSTGFVLTILLVF-VYYFLSSVGVALANQGKLPPVLGVWGA 356

Query: 345 -CISSIFLLMIKKKYTK 360
             I + F  ++ ++ ++
Sbjct: 357 NLIFAAFGALLLQQLSR 373



 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/392 (12%), Positives = 119/392 (30%), Gaps = 44/392 (11%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YI+R  G +F +       +  +    + I  +  +  +   +      LIP +L 
Sbjct: 424 ILDDYIMREFGATFALVLAAFSMVFLIFTFFELIGDIIRNRIAFVTVGDYLLNLIPYILY 483

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            VTP C  +       S+ + +E   +  +G S   ++ PVL L  +++  LF  +    
Sbjct: 484 NVTPLCVLVAVLVTFGSLAKTSEFTAMKASGVSLYRVVTPVLVLTAVIACSLFAFDEFYL 543

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD--------------------------- 155
           P+     + L +  +     ++L  +  +                               
Sbjct: 544 PQANRRQEALRSVIKGKPAQTFLRPDRQWISGQTVLDPISLAQSRSWAPIAPAVVHIGDT 603

Query: 156 -------DLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEV 208
                    Y      +       +F  D       +  +A+S   D +    I  +G  
Sbjct: 604 AKQPARIFYYQFFDPDHDAFANLTVFEFDPATFTLTRRIFAESAKWDSNVNQWIFENGWS 663

Query: 209 HRKSPI--SKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE 266
              S                 +  +         ++   +   L +   ++         
Sbjct: 664 RTFSGEVADTYKPFTLANFPEIHEQPQYFKKEDRQSQQMSFGEL-SSYISDLRQSGFNTM 722

Query: 267 TYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYII 326
               + +++L      ++  +++I  A       +R  +    I++ ++  V+ G S + 
Sbjct: 723 RLSVQLNRKLAYPAITLVMAILAIPFALS---SGKRGGVTGFAIAILLAV-VYLGVSSLF 778

Query: 327 HKIEQNPYYIPILYLF---LFCISSIFLLMIK 355
             +       P+L  +   L    +    +++
Sbjct: 779 EAMGNVNTLPPMLAAWTPDLLFTFAGAYFLLR 810


>gi|149201833|ref|ZP_01878807.1| permease YjgP/YjgQ [Roseovarius sp. TM1035]
 gi|149144881|gb|EDM32910.1| permease YjgP/YjgQ [Roseovarius sp. TM1035]
          Length = 373

 Score =  119 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 122/342 (35%), Gaps = 5/342 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L      F    L +V I W+ + ++  + +    +   + ++ +   +P V+ +V P 
Sbjct: 1   MLSQFMVLFGFFALVLVSIFWINKAVRMFDRLIGDGQPAWVFVEFTALTLPGVIGVVLPI 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                   V+  ++  +EL ++  TG S + L +PV    +++++ + +  + + P   S
Sbjct: 61  AAFAAAVYVVNRLSSESELTVMQATGYSPLRLARPVFVFGVIVAVMMSLLAHFLIPSSLS 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            ++    +    +T   L E  F      +   I +   +  L+ +F+ D RD +    Y
Sbjct: 121 QLRLRLDEVSRNITAKLLSEGEFLHPAPGVTFYIREITLSGELRDVFLSDRRDPEAPVTY 180

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL--KAN 243
            +    +        +++  G           +    F  ++    S     +V   +  
Sbjct: 181 TSSRAYLVQEGGGTRLVMVSGLAQNIRAEQNRLFTTYFDDFSYDISSLVRRDVVNLDEVA 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
                 +L             +    ++ H R+T  L  VI  L+        A  R   
Sbjct: 241 FAGTLEMLRDPEAVAARTGVSMGAVMAQMHGRITAALLCVIAALVGFCTLLVGAHSRFG- 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
               + ++  +  G+    S ++  +  +    P+LYL    
Sbjct: 300 VWRQVLLAFGLLVGLKIVESLVLAPVLASAVLWPLLYLPALI 341


>gi|37681089|ref|NP_935698.1| permease [Vibrio vulnificus YJ016]
 gi|320155253|ref|YP_004187632.1| putative Permease [Vibrio vulnificus MO6-24/O]
 gi|326423844|ref|NP_760390.2| lipopolysaccharide ABC transporter permease [Vibrio vulnificus
           CMCP6]
 gi|37199839|dbj|BAC95669.1| predicted permease [Vibrio vulnificus YJ016]
 gi|319930565|gb|ADV85429.1| predicted Permease [Vibrio vulnificus MO6-24/O]
 gi|319999214|gb|AAO09917.2| putative membrane protein [Vibrio vulnificus CMCP6]
          Length = 357

 Score =  119 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 121/355 (34%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +  +  V ++ +I+ ++++  V   T  L   L      IP  +
Sbjct: 3   KILDLYIGRTIVATTSLVLVTFVGLSGIIKYVEQLRKVGKGTYDLLHALYFVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGVSVLKTAVPLMLVVMALGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +  + +      L+        +  +  D + +I I K + +           ++ 
Sbjct: 123 APDAQ-KMARDLRSFALSGGSIVSVRSGVWAKDANDFIFIGKVDEDKLYGLNMWKFDQNK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   + +A+      D + ++        +         ++   +         + + +K
Sbjct: 182 KLQSVIFAEEVDYQQDNRWLMRYVQITDMQDEKVISKHSLEQMEWETSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +          +    Y   F ++LTQ +   +  L+++           
Sbjct: 242 PEELSLSGLYD-YVTYLKASEQDASRYELAFWRKLTQPISIAVMMLMALSFVFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   +  +   P     +   +       +L+ +K
Sbjct: 301 MGARVISGVIAGFAFYISSEFFGPLTLVYGIPPVFGAVAPSIVFFIVAVMLLNRK 355


>gi|284051460|ref|ZP_06381670.1| permease YjgP/YjgQ [Arthrospira platensis str. Paraca]
 gi|291568812|dbj|BAI91084.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 392

 Score =  119 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/375 (13%), Positives = 129/375 (34%), Gaps = 23/375 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + YI++ +   F+        +A  V  + + +  V+ S   +++  ++    +P 
Sbjct: 19  LSVLDRYIIQELIPPFIFGVGLFTSVAVTVGTVFELVRRVAESGLPVSVAFQVFLLKMPD 78

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    + T  V   ++ ++EL+ I + G S   L+ P +  + +++   F    
Sbjct: 79  FMVLAFPMSMILTTLMVYGRLSSDSELIAIRSCGISLYRLVIPAIIFSFVVTGMTFAFNE 138

Query: 120 IIEPKCRSTIKQLSAKAQL-------------ALTFSYLEENLFFRLDDDLYIKISKYNP 166
           II P           KA                       E    R++    +  ++   
Sbjct: 139 IIVPAANFQATMTLQKALNEDALNISSTNIFFPEYERVSVEGTNRRVNVLRRLFYAEEFA 198

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
           +  + G+ I+D       +I  +++   +         +G V+   P     +I +F   
Sbjct: 199 DGKMSGVTILDRSRAGITQIISSRTAIWNPQESTWDFYNGTVYIVDPDGSYRNIARFDHK 258

Query: 227 TLQTE--SANSSTIVLKANDQNLSFLLNPNPNNPNYRPE-LLETYRSEFHKRLTQWLFPV 283
            L       + ++      + N++              +  +   +    ++       V
Sbjct: 259 QLHLSRVPLDLASQDRDYGEMNIAQTKEYLELMKLSGDQAKILKTKVRIQQKYALPFVCV 318

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +FGL+        +   +  +     IS+ I F  ++  S+I   I Q     P +  +L
Sbjct: 319 VFGLLGSSL---GSRPGRTNRATSFGISVMIIFA-YYLLSFITGAIGQKGIISPFMAAWL 374

Query: 344 FCISSIFL--LMIKK 356
             +  + +   ++ +
Sbjct: 375 PTMLGLGVSGFLLYR 389


>gi|291614864|ref|YP_003525021.1| permease YjgP/YjgQ family protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584976|gb|ADE12634.1| permease YjgP/YjgQ family protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 358

 Score =  119 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 123/360 (34%), Gaps = 6/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    Y+ R I  S  +    ++ +  ++ ++  +N +      L  +L      IP  
Sbjct: 1   MRLLTRYLRREIYASVALVFAALIMLFALLDLVNELNSMGRGDYRLGYVLLFVTLTIPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + T   L  M  ++EL +  ++G S   +I  ++ + + L +  F+   +
Sbjct: 61  IYELFPVAVLIGTIFALVQMAASSELTVYRSSGVSLKQMIVMLVKIGLPLVVLCFLFGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      ++L  KAQ          +  +  D+  +I +    P+ +L  + I +   
Sbjct: 121 IAPPSERMAQELRMKAQNLKVSVKEFRSGVWAKDERSFINVRSMLPDTSLLDVSIYEFDA 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           T   +   +   +  LD     L+       S             +         S +++
Sbjct: 181 TYHLRSITSAEHASYLDEDRWQLDGVRQTLFSKQGATTDNRPRAEWHTSLNPDILSVLLV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L      +     +    Y      +L   L  ++  L+++  +  +   R
Sbjct: 241 VPEQMSAWNLYQ-YTMHLRENHQKTSRYEIAMWNKLVYPLAVLVMMLLALPFSAYQR--R 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL---FLFCISSIFLLMIKKK 357
           +      IF+ + +     +      +    N +   +      +LF   ++ +L   ++
Sbjct: 298 EGGISGKIFMGIVLGLSFHFVGRLFANVGALNDWSPLLSATAMSWLFLALAMGMLWRTER 357


>gi|90408709|ref|ZP_01216858.1| hypothetical protein PCNPT3_03815 [Psychromonas sp. CNPT3]
 gi|90310191|gb|EAS38327.1| hypothetical protein PCNPT3_03815 [Psychromonas sp. CNPT3]
          Length = 354

 Score =  119 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/357 (9%), Positives = 110/357 (30%), Gaps = 4/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  +  ++   ++ ++ +I+ ++++  V   +  +          +P  
Sbjct: 1   MGILDRYIGKTVFAATFLTLFVLLGLSSIIKFVEQMRSVGQGSYDVLAAGYFVLLKMPVE 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     L S+  ++EL+++   G S+  +   VL  A+ +   + +    
Sbjct: 61  MTVFFPMAALIGALIGLGSLASSSELVVMQAAGMSKFRIAGAVLKTAVPMVFAVMLLAEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P        +   A+   +    +  ++ +  D         + +      F   +  
Sbjct: 121 VAPVTDKEAYSMRDLARSGQSSVSNKYGVWVKDADAFISIGRMNSQSELFNVRFYFFNES 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q      A+   +       +L D    +      ++       +           I+ 
Sbjct: 181 MQLDHAVLAKK--VSYRGGYWLLEDSTWTKFESDRTNVEHKDSDVWQTDLTPKKLDVILS 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  ++   +           +    Y     ++       V+  L+S+          
Sbjct: 239 DPSKMSMRD-IYGYITYLENNQQDANRYLLILWRKAVLPFTVVVMMLLSVSFIFGGLRTV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  + I+   +F V          +      +  L L    +  I + +++++
Sbjct: 298 TMGTRLILGIASGFAFHVSGELFGPASLVFGLSPLLGAL-LPSMLVLCIAMYLLRRQ 353


>gi|78222462|ref|YP_384209.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
 gi|78193717|gb|ABB31484.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
          Length = 359

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 120/360 (33%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI     R F +     + I  VI  L++I            + +   Y IP +
Sbjct: 1   MSILTRYIASAYLRVFWLCLASFIAIYLVIDFLEKIGRFLRFDPQWIHVAQFFLYKIPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    M T   L  ++RN+E++ + + G S   +  P+L +A   S+F+ +S  +
Sbjct: 61  ATQVIPLAVLMATLLTLGMLSRNSEIIAMRSCGVSLRKISAPILAIACAASLFVIVSNEL 120

Query: 121 IEPKCRSTIKQLSAK-AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           I PK  S ++ +     +   + ++L +N  +  D+   +    ++P++       + S 
Sbjct: 121 ILPKTYSQMRFIEEVLIRKKSSNTFLRQNNIWHKDNKAILMARAFDPDHQTLRGVTLWSF 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS-KDISIMKFKSYTLQTESANSSTI 238
                      +     D     L    V         + + +      L  +  +   +
Sbjct: 181 SEGMTPSRRIDAEQGSWDGGQWTLWKVTVRDFQGGGVANTTQIASMPVNLNLQIEDLKVV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A++     L                 Y ++ H +++     +I   + I  A + + 
Sbjct: 241 DKYADNMGFLKL-REYIQKLKKGGYETTRYEAQMHSKISLPFASLIMAFLGIPFALRGSR 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-FLFCISSIFLLMIKKK 357
                      I    ++ +         +    P  +       +F +S I+L M   +
Sbjct: 300 SSGVALGIGASIGFGFAYFIINAILISFGQTGVLPSLVSAWAANVIFALSGIWLAMTLNR 359


>gi|120599781|ref|YP_964355.1| permease YjgP/YjgQ family protein [Shewanella sp. W3-18-1]
 gi|146292283|ref|YP_001182707.1| permease YjgP/YjgQ family protein [Shewanella putrefaciens CN-32]
 gi|120559874|gb|ABM25801.1| permease YjgP/YjgQ family protein [Shewanella sp. W3-18-1]
 gi|145563973|gb|ABP74908.1| permease YjgP/YjgQ family protein [Shewanella putrefaciens CN-32]
 gi|319425583|gb|ADV53657.1| inner membrane component of lipopolysaccharide transporter, LptG
           [Shewanella putrefaciens 200]
          Length = 352

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 119/355 (33%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R I  +  +  L +  ++ +I+ + ++ LV   T ++        +LIP  
Sbjct: 1   MKILDLYIARVILSTSALCLLVLTGLSGIIKWVDQLRLVGRGTYTMMDAGIYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQVSGLSRLQITLSAMKTAVPLMLMVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P       +L A      +       ++ +  D         N            + +
Sbjct: 121 GAPVAEQKANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGEVENITKLNNITLYKFNSE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  K+ +A+      D  +  L D +    +     +  ++   +         S + +
Sbjct: 181 LKLTKVVHAERAVFTRD--SWRLFDVKRTDLTYDQVTLEHLEEDIWQSSLTPDKLSVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++  LL    +      +    Y     ++L Q +   +  L+++          
Sbjct: 239 KPEALSIQGLL-GYLDYLKTNSQDPSRYELALGRKLMQPVTVGVMMLVALSFVFGPLRTV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  + +    SF +       +  + + P Y+  +   L      F  + +
Sbjct: 298 TMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAMAPSLLFTGIAFYFIRR 352


>gi|225012841|ref|ZP_03703274.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
           MS024-2A]
 gi|225002963|gb|EEG40940.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
           MS024-2A]
          Length = 357

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 118/360 (32%), Gaps = 6/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI++    +F +  L  + I  ++ + ++I+           ++          
Sbjct: 1   MKLIDLYIIKRYIGTFTVMILLFIPIGIMVDVAEKIDKFKEKEVPFGAIIDYYIDFTWYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++ I ++G S    ++P L  A  ++IF F +  +
Sbjct: 61  ANLLFPIFLFLSVIWFTSKLANNTEVIAILSSGISFFRYLRPFLLAATFIAIFAFFAGML 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I PK          K  +        +      +++     S            +     
Sbjct: 121 IVPKSNLGFNDFRYKYIIKKEARNTTKVFQQINENEFIYVNSYDPIRKRATNFTLEHFEG 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +      +       D     L++         S+    +  K      E  + + +  
Sbjct: 181 NKLKFKIKSNRIRWVEDDSVFRLSNYSKRTFLGDSEHFESIARKDTLFDFEIEDLAPVNY 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            A     S L     +       L  ++    HKR +  +   I  +I++      +  R
Sbjct: 241 IAETLTFSELNQFIEDEKERGSMLTNSHLLVRHKRWSIPISAFILTIIAVAV---SSFKR 297

Query: 301 QRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +      +   +S+ F   +    F  ++ K    P     L L LF I + FLL   K+
Sbjct: 298 RGGMGVNLAFGISLGFLFIFFDKIFGVLVSKSTFPPVVAAWLPLVLFGILAFFLLRYAKR 357


>gi|209526011|ref|ZP_03274544.1| permease YjgP/YjgQ family protein [Arthrospira maxima CS-328]
 gi|209493537|gb|EDZ93859.1| permease YjgP/YjgQ family protein [Arthrospira maxima CS-328]
          Length = 392

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/375 (13%), Positives = 130/375 (34%), Gaps = 23/375 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + YI++ +   F+        +A  V  + + +  V+ S   +++  ++    +P 
Sbjct: 19  LSVLDRYIIQELIPPFIFGVGLFTSVAVTVGTVFELVRRVAESGLPVSVAFQVFLLKMPD 78

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    + T  V   ++ ++EL+ I + G S   L+ P +  +  ++   F    
Sbjct: 79  FMVLAFPMSMILTTLMVYGRLSSDSELIAIRSCGISLYRLVIPAIIFSFFVTGMTFAFNE 138

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLE-------------ENLFFRLDDDLYIKISKYNP 166
           II P           KA      +                E    R++    +  ++   
Sbjct: 139 IIVPAANFQATITLQKALNEDALNIRSTNIFFPEYERVSVEGTNRRVNVLRRLFYAEEFA 198

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
           +  + G+ I+D       +I  +++   + +       +G V+   P     +I +F   
Sbjct: 199 DGKMSGVTILDRSRAGITQIISSRTAIWNPEESTWDFYNGTVYIVDPDGSYRNIARFDHK 258

Query: 227 TLQTE--SANSSTIVLKANDQNLSFLLNPNPNNPNYRPE-LLETYRSEFHKRLTQWLFPV 283
            L       + ++      + N++              +  +   +    ++       V
Sbjct: 259 QLYLSRVPLDLASQDRDYGEMNIAQTKEYLELMKLSGDQAKILKTKVRIQQKYALPFVCV 318

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +FGL+        +   +  +     IS+ I F  ++  S+I   + Q     P +  +L
Sbjct: 319 VFGLLGSSL---GSRPGRTNRATSFGISVMIIFA-YYLLSFITGAMGQKGILSPFMAAWL 374

Query: 344 FCISSIFL--LMIKK 356
             +  + +   ++ +
Sbjct: 375 PTMLGLGVSGFLLYR 389


>gi|91228858|ref|ZP_01262763.1| putative permease [Vibrio alginolyticus 12G01]
 gi|269966357|ref|ZP_06180443.1| Predicted permease [Vibrio alginolyticus 40B]
 gi|91187596|gb|EAS73923.1| putative permease [Vibrio alginolyticus 12G01]
 gi|269829034|gb|EEZ83282.1| Predicted permease [Vibrio alginolyticus 40B]
          Length = 356

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 118/355 (33%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +     V ++ +I+ ++++  V      L   L      +P  +
Sbjct: 3   KILDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGRGVYDLTHALYFVLLSVPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L I +       
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMIVVMALGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +      ++        +  +  D + +I I K   +            D 
Sbjct: 123 APEAQ-KMARDLRAFAISGGSIVSVRSGVWARDANDFIFIGKVEDDKLYALNMWRFDDDK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              K+ +A+      D   ++        ++        ++   +         + + +K
Sbjct: 182 NLQKVIFAEEVDYQQDNNWLMRYVQITDMENENVISKQDIEQMEWHTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +          +    Y   F ++LTQ L   +  L+++           
Sbjct: 242 PEELSLSGLYD-YVTYLKASEQDASRYELAFWRKLTQPLSIAVMMLMALSFVFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   +  +         L   L  ++    L+ +K
Sbjct: 301 MGARVLSGVVAGFTFYISSEFFGPLSLVYGISPVFGALAPSLVFLAIAIALLRRK 355


>gi|269103491|ref|ZP_06156188.1| putative membrane protein [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163389|gb|EEZ41885.1| putative membrane protein [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 356

 Score =  118 bits (296), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 118/355 (33%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  ++   +V ++ +I+ ++++  V   T  L   L      +P  +
Sbjct: 3   KILDWYIGRTIIGTTALTLSTLVGLSAIIKYVEQLRKVGQGTYDLWNALIFVLLSVPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +    L  A+ L + + +     
Sbjct: 63  EMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSTLKTAVPLMLMVMLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L            ++  ++ +  +D       +             +   
Sbjct: 123 APQAQKAARDLRTFWTSGGNMLSVQSGVWAKDGNDFIYIARVHEQKELDGINIWEFNGKN 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +  +  +A+        +   L    V   +PI    +      +         + + +K
Sbjct: 183 KLTQSVFAEKAQY-NAEKGWSLKYVTVTDFAPIEIKETKYPTLDWQTTLTPDKLAIVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS + N          +    Y   F ++  Q +   +  L+++           
Sbjct: 242 PEELSLSGVYN-YVQYLKESKQDASRYELAFWRKALQPVSIAVMMLLALSFVFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +       + ++ + P  I  L   +  ++    L+ +K
Sbjct: 301 MGARVLSGVIFGFAFYISNEVFGPMSQVYRLPPVIGALAPSMVFLAITIYLLKRK 355


>gi|255066290|ref|ZP_05318145.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
 gi|255049500|gb|EET44964.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
          Length = 356

 Score =  118 bits (296), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 41/360 (11%), Positives = 123/360 (34%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +I+  +  +   + +   + +     +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGKGSYNGATMAQYVLMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +    ++ +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGLIFAIATAALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      + + + A      +       +  + +  I + +  P++TL GI I    D
Sbjct: 121 IAPVLSQKAENIKSAAINGKISTGN--TGLWLKEKNSIINVREMLPDHTLLGIKIWVRND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +       ++  +  +  L +      S    ++S    +++ +  +      +++
Sbjct: 179 KNELRQATEAESAVLNNDGSWQLKNIRRSTLSEDKVEVSTAAEENWPIAVKRNLMDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L     ++     +  + Y   + ++L   +   +  L++     +     
Sbjct: 239 KPDQMSVGELT-TYISHLENNNQNTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQTTRHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F           ++   P ++    L     + + + +I+++  +
Sbjct: 298 NMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAG-ALPTIAFALLAVWLIRRQERR 356


>gi|95928710|ref|ZP_01311456.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
 gi|95135055|gb|EAT16708.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
          Length = 360

 Score =  118 bits (296), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 121/360 (33%), Gaps = 5/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +   +S    V I  ++   ++++       + ++ +    + IP +
Sbjct: 1   MTLIQRYLLTTFTKITSLSLAAFVGIYLLVDFFEKVDDFLEHEAAAHLYIAYFAWKIPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + T   L    +  EL  +   G     ++ P L  A+LL+   F     
Sbjct: 61  VSQMLPLTILLGTFLTLGGFTKTNELTAMRAGGIGLQRIVTPFLVTAVLLTGINFALNEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P        +        T    + N  +  + +    I    P         +   D
Sbjct: 121 LVPVGTQRSNHIFRTEVKGKTQMLAKRNDLWFREANTLYHIQLALPEKKQLRGISLYLVD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY---TLQTESANSST 237
           +Q + +   ++ +              V    P S+ ++  K ++     L+    +  T
Sbjct: 181 SQLNLLTRIEAQAATFKEDQWQAEHVTVRHFDPQSRQLTAQKEENLRLLPLKKTPEDFGT 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +  K  + + + L +               YR + H RL+     +I   ++I  A +++
Sbjct: 241 VSGKNEELSFTQL-SKISTQMQREGLDATRYRVDMHSRLSTPFACIIMAFLAIPFALQKS 299

Query: 298 LVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                     I + + ISF +       + +     P+        +F +  +FLL+  +
Sbjct: 300 RNVNLSLGISISVLIGISFFIVQSTLIALGYSTVLPPFIAAWAANIIFALVGLFLLLSTR 359


>gi|71277954|ref|YP_267493.1| putative permease [Colwellia psychrerythraea 34H]
 gi|71143694|gb|AAZ24167.1| putative permease [Colwellia psychrerythraea 34H]
          Length = 355

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 129/356 (36%), Gaps = 3/356 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI R I  +  ++    V ++ +I+ ++++  +      L        Y +P  
Sbjct: 1   MRIIDFYIGRVIASTTFITLAVFVSVSGIIKFVEQMRAIGRGNYDLAHAALYVLYAVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     +  +  N+EL+++   G SR+ +IK V+  A+LL I        
Sbjct: 61  VEVFFPMSALIGGLIGIGMLASNSELIVMQAAGLSRLDIIKSVMKTAVLLIIVSMAIGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +++ A+A          +N  +  D D ++ I +      L+ + I    D
Sbjct: 121 LAPSGEAKAREIRAQAISG-GSLIAAKNGVWAKDGDYFVNIGEVLDRGQLKKVQIYGFND 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                 + +   +I  D+ + +L D E    +           K +           + +
Sbjct: 180 ELKIDSWLSAKSAIYQDK-SWLLTDVEEFSLTENEIITKSHSQKIWNSSLTPKKLGVVTV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +L  L++   +      +    Y+  F +++ Q L   +  L+++          
Sbjct: 239 TPESLSLRGLID-YLDYLEANEQDPSRYKLAFWRKIMQPLTVAVMLLVALSFIFGPLRSV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  + +   I F +       +  + Q P  +  +   LF +   +  + KK
Sbjct: 298 SMGARIMMGVFTGILFFISNEVLGSLSLVYQLPPILGAMIPSLFFVGIAWYFIGKK 353


>gi|148546262|ref|YP_001266364.1| permease YjgP/YjgQ family protein [Pseudomonas putida F1]
 gi|148510320|gb|ABQ77180.1| permease YjgP/YjgQ family protein [Pseudomonas putida F1]
          Length = 383

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/353 (13%), Positives = 119/353 (33%), Gaps = 26/353 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   +       +L  I G+ +P  L 
Sbjct: 14  IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLFLIMGFRLPGFLQ 73

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A L+++ +      + 
Sbjct: 74  LILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMAPAALVALLVAWLSLSLA 133

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P   + ++Q+ ++      F  L    F   R    +       +    L G+FI + R 
Sbjct: 134 PLGVAQVQQIISQQDALTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRINLGGVFISEKRF 193

Query: 181 TQTHKIYYAQSGSIDLDRQAII---------LNDGEVHRKSPISKDISIMKFKSYTLQTE 231
            Q      A S  +       I         L +G  +  +P   D   +K+ +Y +   
Sbjct: 194 NQDKTKDRAPSVLVAEKGHQEIQADGNRYLVLENGYRYDGNPGQADYRAIKYDTYGVLLP 253

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               +  V +      S L+           +     R+E   RL+  +   +  L+++ 
Sbjct: 254 KPEVAEEVTEREALPTSELI----------GKEGLRERAELQWRLSLPILVFVVTLLAVP 303

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLF 342
                 +  ++ +   +  ++ +          +   +   + P  + + ++ 
Sbjct: 304 L---SRVNPRQGRFLKLLPAILLYMAYLTMLISVRGALEKGKLPIALGMWWVH 353


>gi|322418226|ref|YP_004197449.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
 gi|320124613|gb|ADW12173.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
          Length = 360

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 119/357 (33%), Gaps = 7/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    Y+ +   R   +     + I  V+  +++++  + +  S   L+      IP +
Sbjct: 1   MRILTRYVAKAYLRMLGLCLGSFITIYLVVDFMEKVSRFTRAGASWKYLVLFFITKIPEM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    M T   L S + ++EL  + + G S   +  P+L +++L+S+ + +    
Sbjct: 61  VVDSAPLAVLMATLLTLGSFSLSSELTAMRSCGVSLARISAPILAISVLMSLVVLMLGEF 120

Query: 121 IEPKCR-STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + PK     I       Q     +Y  ++  +  ++   ++ S + P+        +   
Sbjct: 121 VIPKSYAQRIYIQEVLIQKKSPSTYFRQHNIWHREEGNVLRASLFEPSQNQLKGVTLWEV 180

Query: 180 DTQTHKIYYAQSGSIDL-DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             +T         ++     Q  +  D  V          +    +             +
Sbjct: 181 QPKTGLPLRRTDAALGQLGNQGWVFKDVVVREFEGADISRTRKYPQLAAPLKLKPADLKV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           + K +D      LN               Y ++FH R++      +   + I  A +   
Sbjct: 241 LGKYSDSMTLRELNRYCKKIQAGGYDATRYITQFHSRISLPFGCAVMAFLGIPFALRGG- 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIFLLM 353
            R       I +S+ + F      S II  + Q     PI   +   F   +    +
Sbjct: 300 -RSSGIAFGIGLSIGVGFLYVIINSVIIS-VGQVGLLPPIAAAWATNFIFLAAGGWL 354


>gi|237736827|ref|ZP_04567308.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229420689|gb|EEO35736.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 360

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 121/362 (33%), Gaps = 11/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI +   +SF++S +  + I  V Q+ + +  +S    +    +     L+P  
Sbjct: 1   MKIIDKYISKNFIKSFMLSLMAFMGIFIVSQLFRVVKYLSDGRFTPGDAVYYIITLLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    + +   ++SM  N E++ +  +G     ++   + ++ ++S  +F   + 
Sbjct: 61  FIDVAPLAVLLGSMMTISSMASNLEIISLKTSGIKFRRIVLFPIIISAIISGVVFFVNDT 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV---- 176
           + P      + L +           + N F R +D  YI + +     T     I     
Sbjct: 121 LYPISLKINRDLRSGEVQKRVAPLEKRNAFLRGEDSNYIYLMQKVNRETGFAENIEIVDL 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +    +  +I  A  G  +  ++  +L D  ++      K  +   F          +  
Sbjct: 181 NKSFDKIERIITAPEGRYNFGKKVWMLKDVNIYYGDDNKKPETKEFFSDSKYGDNPEHFI 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T+ ++     +  L                    E   R +      +   + +      
Sbjct: 241 TLTVEPRTLTIKDL-KKTIREMKSIGGDTRELLVELGNRYSFPFASFVISFLGLAL---G 296

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
               +      + I + + +G ++        +  N +  P +  ++       + + ++
Sbjct: 297 GRYVRGTSAVSLGICVLLGYG-YYVVQASFEALSANGFLNPFVGGWIPNIMFLVVGIYLL 355

Query: 355 KK 356
            K
Sbjct: 356 NK 357


>gi|71279918|ref|YP_267491.1| putative permease [Colwellia psychrerythraea 34H]
 gi|71145658|gb|AAZ26131.1| putative permease [Colwellia psychrerythraea 34H]
          Length = 388

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 134/371 (36%), Gaps = 23/371 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+L+ + ++ L     ++ I    + ++ +   S  +    +++      IP +  
Sbjct: 2   IIFRYLLKEVAKTQLAVFFVLMTIFISQKFVRVLGDASEGSIPGQLVMTFIALKIPDLAG 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +        +  ++E+ ++   G S   +++  L LA++ +IF  I    + 
Sbjct: 62  FILPLSLFLGVLLAYGRIYADSEMTVLHACGVSEWYVVRVTLVLAVITAIFTGIFTLYLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++  +       S L    F +  +   +         T     +  ++  +
Sbjct: 122 PLASEYQYKVKEELAADSGLSALVSGRFQQTGNQDAVVFIHDKDRETNSFNKVFVAQLPK 181

Query: 183 ---------THKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
                       + YA++G +  D    Q ++L DG  + +   SK+   + F  Y +Q 
Sbjct: 182 GDNVDASIINSSLVYAKTGKVFEDDTGSQQLVLGDGIRYHRDIESKEFQSVAFNKYYIQI 241

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           +         K +  +   L N  P            YR+    R+   L  +I   I++
Sbjct: 242 KDQEVEHQHRKLSAISTLELYNNMPPELE------SAYRATIQWRIAFPLACIILIFIAV 295

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISS 348
                  +  ++ K   +  +L +  G     + +   IE+N  P  + +  + +  +  
Sbjct: 296 PL---SVVNPRQGKFAKMLPALMLFLGYLLLLTSMRSAIEKNAIPSVVGLWPIHISALFI 352

Query: 349 IFLLMIKKKYT 359
             +L++K++ +
Sbjct: 353 GMMLLMKERSS 363


>gi|253583478|ref|ZP_04860676.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251834050|gb|EES62613.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 362

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 129/362 (35%), Gaps = 13/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI +   +SF +S +  V I  V Q+ + I  VS    S +  +     +IP +L
Sbjct: 4   KIIDRYISKNFIKSFFLSLIAFVGIFLVSQLFKVIRYVSDGRFSADESIVYILTMIPKIL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V P    + +   ++SM  N E++ +   G S   ++   +F++ +++I +F+  + +
Sbjct: 64  IDVAPLAVLLGSLMTVSSMASNLEVISLKTAGISFKRIVLFPIFISAVIAIIVFLINDSL 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV----D 177
            P      +++             + N F R ++  Y+ +       T  G  I     +
Sbjct: 124 YPYSVRKNREIKDGGNTRREMPVEKRNAFLRGENSNYVYLMGKINRETGFGENIEIVDLN 183

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +  +I  A+ G  +  ++  +L D  ++    + K   +  F       E     T
Sbjct: 184 EEFNKVERIITAKEGRYNFTKKVWVLKDANIYNGKELKKAEEVKLFTEDKYDDEPDKFIT 243

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             ++     +  L   +                E   R +      I   + +       
Sbjct: 244 KSVEPKTLTIKEL-KKSVREIKSIGGDTRELLVEIGNRYSFPFSSFIISFLGLSLG---- 298

Query: 298 LVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
             R  +    I ++LS++ G  ++        +  N +  P +  ++       I +  +
Sbjct: 299 -SRYVRGASAISMALSVALGYGYYIVQASFEALSINGFLNPFISGWIPNIIFLGIGIYFM 357

Query: 355 KK 356
            +
Sbjct: 358 YR 359


>gi|145631589|ref|ZP_01787355.1| predicted permease [Haemophilus influenzae R3021]
 gi|144982789|gb|EDJ90315.1| predicted permease [Haemophilus influenzae R3021]
          Length = 358

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 118/356 (33%), Gaps = 1/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  +P  +
Sbjct: 3   NTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTMPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     L ++   +EL+++ + G SR  +   V+  A+ L +F  I     
Sbjct: 63  ETFFPMAALLGALIALGNLASRSELVVMQSAGFSRFKIGMAVMKTALPLVVFTMIIGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     + + AKA    +   ++  ++ +            +             +  
Sbjct: 123 IPQTEQFARDMRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFDQQH 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              K+ +A   S   D     L        +      +    +++           + L+
Sbjct: 183 NLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAVSLR 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++S L +   +      + +  +   F +++ Q +   +  L+++           
Sbjct: 243 PTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRSVT 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                   I +   F V          +   P     L   L  I  I+ L+ +K+
Sbjct: 302 AGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKR 357


>gi|295689676|ref|YP_003593369.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
 gi|295431579|gb|ADG10751.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
          Length = 380

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 133/361 (36%), Gaps = 7/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E Y+ R +    L++   +V +A + + L   +++    +S  + LKI    +P +
Sbjct: 1   MRLIERYLFRQLLGPTLLATAALVALALLARSLSEFDVLVEQRQSAVVFLKIILLALPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     L  ++   E+++    G SR  +I P + LA++ ++   IS   
Sbjct: 61  LAIMMPLALFVAALVALNRLHTEQEIVVCFAGGMSRWAVISPAMRLAVMAALISLISGLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P     I++ +   +  +  + ++   F      L +     N +N +Q +FI     
Sbjct: 121 LQPWSARQIRETAFDIKTDVASTLVQPGQFTEPGPGLTVYAQSINRDNKIQNLFIHQEMP 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSS 236
                 Y ++   I     +  +I+  G   + S     +    F  YT    S   +  
Sbjct: 181 NGGASTYSSREAEIATRKGQPVLIMRHGSNQQFSRQG-VLQYTSFDEYTFDLSSLFRSDE 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +  K  D+    L  P+    ++  +  +   +E H R    L+ +    ++I A    
Sbjct: 240 LLHYKIADRYPHELFFPDMTQ-DWERQNRDKMLAEGHSRFAGPLYNLALMAMAIAAVIGG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R       I    + +  V      +      +P    + YL      +     I +
Sbjct: 299 PFSRMGYG-KRIAAVGAAAGVVRIAGFGVQAACADSPELNVLQYLVPLTAMAWGFSQIFR 357

Query: 357 K 357
           +
Sbjct: 358 Q 358


>gi|121997477|ref|YP_001002264.1| permease [Halorhodospira halophila SL1]
 gi|121588882|gb|ABM61462.1| permease YjgP/YjgQ family protein [Halorhodospira halophila SL1]
          Length = 372

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 123/363 (33%), Gaps = 19/363 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + Y++R    + L     +  +    Q++  +   +        +  + G  I   
Sbjct: 8   LSIIDRYLVREAAGAALAVLAVLFAVLSANQLIDYLADAAGGDLPGEAVAALMGLQILRY 67

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P    +     L  + R++EL ++   G      ++ +L LA+ +++ +     +
Sbjct: 68  LGVVIPAALFLGIVLALGRLYRDSELPVLAACGVGPARQMRGLLLLALPVAVGVGALSTV 127

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P    T    + +A        L+   F    D   +  S+ + +  L+ +F    RD
Sbjct: 128 AAPWASHTADVYAEQAARTADLGALQAGRFIGGGDAGTVYASRTDGDGVLREVFAHA-RD 186

Query: 181 TQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +   +  A  G   +D    ++  +  DG  +   P   D  +  F  + L  ++    
Sbjct: 187 GELETVIRADRGRQLIDPETGQRFFVFEDGHRYDGHPGQLDWRVTDFDRHGLLIDTREPR 246

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +         + L                  R+E   RL+  +  V+  L+++  A   
Sbjct: 247 EVSRDREGTPTAELWAAGGLQD----------RAEIEWRLSMPVMVVVLSLLAVPLA--- 293

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMIK 355
               +  +   +  ++ +    F   S     +E      P+ L+          +L  +
Sbjct: 294 KAEPRDGRYGKLLSAVLVFVAYFQLLSSGREWLEAGIVPAPLGLWWVHLLAGVAVVLWTR 353

Query: 356 KKY 358
           +++
Sbjct: 354 RRF 356


>gi|154248856|ref|YP_001409681.1| permease YjgP/YjgQ family protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154152792|gb|ABS60024.1| permease YjgP/YjgQ family protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 1111

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 124/356 (34%), Gaps = 4/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+   Y+L+   + F M     +    V  + Q  + +  +   ++ LL    Y IP  
Sbjct: 1   MKTLTRYVLKQALKPFFMGLAGFIVFVSVEWLYQISDYIIRNRVGIDKLLLFVMYNIPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +  P         V++ M  N E+  +   G S   L+ P + LA++L  F ++  + 
Sbjct: 61  TFLGIPVGVLFSIFWVISDMYNNREITALLVHGVSAKHLVTPFIILALILGFFSWLLGDY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P       Q+  +       S ++ N+   L+ D+Y  + ++N         ++   +
Sbjct: 121 VVPTANYKSSQILNQYIFQSPESVVKTNMLVELEKDVYFYVKEHNKAKGELYDVVLFRNE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS-IMKFKSYTLQTESANSSTIV 239
               +I  A+   +   +    L DG ++     +  +   M+FK   L         + 
Sbjct: 181 EGNEQILTAKK--VIKRKDGWFLLDGSMYIVELKTGFLKLDMQFKEMKLDVAGEIEEMLR 238

Query: 240 LKANDQN-LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                ++  S  L                   E ++R    L  ++  LI +  +     
Sbjct: 239 AYKTTRDKTSKELREQLQTYKKLGINASNLIVELNQRYANALGALVIVLIGLPVSLLFGF 298

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           + +   I   F+ + +  G     S +  +   +P     L   +F +    + + 
Sbjct: 299 ISRSWSIILTFLIIVLYQGSGAWLSGMGKEGLMDPMLATWLPNIVFSVVGFIMYIF 354


>gi|16332044|ref|NP_442772.1| hypothetical protein sll0496 [Synechocystis sp. PCC 6803]
 gi|1001356|dbj|BAA10843.1| sll0496 [Synechocystis sp. PCC 6803]
          Length = 394

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/371 (9%), Positives = 121/371 (32%), Gaps = 20/371 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + Y+ R +   FL S   +  +   +  +    N +      +    ++    +P  
Sbjct: 22  SLMDRYVARQLIPPFLFSVGVVASLGLAIGNLSDLGNKIVEKNLPVAKAAEVLLLKVPEF 81

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    + T      ++ + E++ I + G S   LI P + L++L++ + F+    
Sbjct: 82  LAYSLPVAVMLATMMTFGRLSGDCEIIAIRSCGVSLYRLILPAVVLSLLVTGWAFVLTEW 141

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK------------ISKYNPNN 168
           + P        +  ++       +   ++F+   +++ +              ++     
Sbjct: 142 VVPVANYRATSILIESIDEEHPFWQNRDVFYPEFEEIKLDNGQTARRLKSLVYAEKFDGK 201

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            +Q + ++   +     I  + + + + D +      G V+R +        + F +  +
Sbjct: 202 EMQNLTVLQWTENHLKHIVLSDNATWNNDNKRWDFFHGTVYRLTETEDYQEAVPFTNKQI 261

Query: 229 QT--ESANSSTIVLKANDQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFPVIF 285
                + + +       +  ++   +           +  + ++    ++L      ++F
Sbjct: 262 ALPQSAFDFARQGRDPYEMTIAEAQDYIKILKLIGDEKKTQFFQVRTEQKLAFPFVCIVF 321

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLF 344
            ++      +     +  +     +++ I F  +    +             +  +L  F
Sbjct: 322 AVVGSAIGARPQ---RISRATGFGLTIVIIFAYYILGFFSGSLGIVGLISPTLAAWLPNF 378

Query: 345 CISSIFLLMIK 355
               + + ++ 
Sbjct: 379 VGLGVGIWLLY 389


>gi|260779400|ref|ZP_05888291.1| putative membrane protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604490|gb|EEX30790.1| putative membrane protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 356

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 120/357 (33%), Gaps = 3/357 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +     V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDLYIGRTIIATTSLVLATFVGLSAIIKYVEQLRKVGQGSYDLLQALFYVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + + +     
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGYSKLDIGLSVLKTAVPLMVLVTLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +       +           +  D + +I I K   +          + D 
Sbjct: 123 APQAQ-KMARDLRAFTTSGGAIMSVRTGVWARDANDFIFIGKVEDDKLYGLSMWRYNDDK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           Q   + +A       D   ++ +         +    + +    +T        + + +K
Sbjct: 182 QLESVVHAAEVDYLSDNTWVMKDVQLTEMADEVEITKTSLPEYRWTTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +          +    Y     +++TQ     +  L+++           
Sbjct: 242 PEELSLSGLYD-YVTYLKASEQDASRYELALWRKVTQPFSIAVMMLMALSFIFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                   +    +F +   F   +  +   P     + +      ++ L ++++K 
Sbjct: 301 MGARILSGVVAGFTFYISSEFFGPLSLVYSIPPVFGAV-MPSIVFLTVALALLRRKL 356


>gi|319944263|ref|ZP_08018539.1| permease YjgP/YjgQ family protein [Lautropia mirabilis ATCC 51599]
 gi|319742558|gb|EFV94969.1| permease YjgP/YjgQ family protein [Lautropia mirabilis ATCC 51599]
          Length = 382

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/381 (12%), Positives = 121/381 (31%), Gaps = 28/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+ R I    +   L  + +     ++  ++ +      L   +      +P+ 
Sbjct: 1   MKLMARYLTREIAGGIMAVLLGFLGLFAFFDLINELDDIGQGGYRLPQAVLYVLLGLPSH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +     L    +N+E   +   G SR   ++ VL L +LL++   ++   
Sbjct: 61  IYELMPVAALIGCIYALAQFAQNSEFTAMRAAGMSRQLALRGVLVLGVLLAVLTAVAGEW 120

Query: 121 IEPKCRSTIKQLSAKA----------QLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL 170
           I P      +QL              +  L           +     ++ I     +  L
Sbjct: 121 IAPMAEQRAQQLRMDVLGKGSGVGAFRSGLWLKDSVRGPDGQRLQTRFVNIGTLEADGGL 180

Query: 171 QGIFIVDSRDT-QTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISI----- 220
             + I +     +   + +A+ G           +  L   E  R +             
Sbjct: 181 SKVAIHEFDTDFRLTAVIHAEHGRYQPAHNGQASSWRLEGVETTRFNVSRTQTGYDALHA 240

Query: 221 ---MKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
               + ++  +   +    +++  A D+  +  L    ++     +    Y     K++ 
Sbjct: 241 AVERRPETVWVSDLNPALLSVLAIAPDRMSALALWRYTSHLKENAQNANRYELALWKKVV 300

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
             L  ++  ++++        VR       +F  +S+  G +       +    N  + P
Sbjct: 301 YPLAIIVMLMLALPFGYL--QVRAGGIGLKLFFGISLGVGFYIMNGLFSNLGLIN-TWPP 357

Query: 338 ILY--LFLFCISSIFLLMIKK 356
            L   +      ++ L+M+ +
Sbjct: 358 WLAVSIPSILFLALALVMLNR 378


>gi|330811514|ref|YP_004355976.1| permease [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
 gi|327379622|gb|AEA70972.1| Putative permease [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 373

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/366 (12%), Positives = 123/366 (33%), Gaps = 26/366 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   +S       L  I G+ +P  L 
Sbjct: 2   IVFRYLSREVLLTLSAVSAVLLVIIMSGRFIKYLAQAASGALDPGSLFLIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +  ++E+ ++  TG S+  L +  LF A L+++ +      + 
Sbjct: 62  LILPLGLFLGILLAYGRLYLDSEMTVLSATGMSQQRLFRMTLFPATLVALVVAWLSLSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+  +  + L  +      F  L    F  L D   +  ++   ++ +    +  ++   
Sbjct: 122 PQGATQFQLLINQQDAMTEFDTLVPGRFQALRDGTRVTYTEQLSDDRIDLGGVFITQKNL 181

Query: 183 THKIYYAQSGSI-----------DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           +      +  S+               + +IL +G  +   P   D   +K+ +Y +   
Sbjct: 182 SSDAKKDRGISVLVAEKGRQEINPDGNRYLILENGYRYDGKPGQADYRAIKYDTYGVLLP 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               S  V   +    + LL                 R+E   RL+  L   I  L+++ 
Sbjct: 242 KPEVSDEVTDRDAMPTASLL----------GNDDIRARTELQWRLSLPLLVFIVTLMAVP 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSI 349
                 +  ++ +   +  ++ +              +   + P  + + ++    ++  
Sbjct: 292 L---SRVNPRQGRFLKLLPAILLYMAYLTILISARGALEKGKIPPALGLWWVHSIFLAIG 348

Query: 350 FLLMIK 355
             L+  
Sbjct: 349 LGLLYW 354


>gi|90580730|ref|ZP_01236533.1| putative permease [Vibrio angustum S14]
 gi|90437998|gb|EAS63186.1| putative permease [Vibrio angustum S14]
          Length = 357

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 120/355 (33%), Gaps = 1/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +F ++   +V ++ +I+ ++++  V   +  L   L      +P  +
Sbjct: 3   KILDWYIGRTIIATFSLTLSTLVGLSAIIKYVEQLRKVGQGSYDLLKALYFVLLSMPQDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +    L  A+ + I + +     
Sbjct: 63  IMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSTLKTAVPMMIVVVLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   ++  +      +    +  ++ + D+        ++ N              
Sbjct: 123 APQAQKMAREYRSAWVYGGSVIAAQNGVWAKNDNSFIYMGRVHDLNKVDVVNIWQFDNKG 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           Q   +  A+  S D  +   + +              S +  K +         + + +K
Sbjct: 183 QLDDVTSAKRASYDKAKGWTMHDVTITDMTGSNQLTNSHIANKHWETTLTPDKLAVVTVK 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +   N      +    Y   F ++  Q +   +  L+++           
Sbjct: 243 PEELSLSGLYH-YVNYLKETKQDASRYELAFWRKALQPVSIAVMMLLALSFVFGPLRSVT 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +       +  + + P  +  L   L  +     L+ +K
Sbjct: 302 MGARVLSGVIFGFAFYISDQVFGPMILVYRLPPILGALGPSLAFLFITIYLLRRK 356


>gi|88859093|ref|ZP_01133734.1| hypothetical protein PTD2_08814 [Pseudoalteromonas tunicata D2]
 gi|88819319|gb|EAR29133.1| hypothetical protein PTD2_08814 [Pseudoalteromonas tunicata D2]
          Length = 354

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 128/357 (35%), Gaps = 4/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+ R I ++   + L +V I+ +I+ ++++  V   +  +      + + IP  
Sbjct: 1   MKILDWYLGRSILQTTGFALLVLVGISTLIKFIEQLKYVGRGSYDVMTAGLYTLFSIPAD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++  N+EL+++   G SR  +I+ V+  A+++++ +      
Sbjct: 61  VVTFFPMATLIGGLTGLGALASNSELVVMQAAGLSRFEIIRSVMKTALVMALCVMAMGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+ +   K+L   A       +      +  D D+++ I   + N  L G+ +     
Sbjct: 121 GVPEAQKQAKELRTYAISG-GSIFNARQGVWAKDGDVFLNIDNVDDNGQLNGLKMYQFNK 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           +           +I       +L   +              K + Y  +        + L
Sbjct: 180 SLDLVAITNAQSAISHRD-GWLLKGVKTIYLDEQEVRQENTKEQLYVSELTPDKLGIVSL 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           KA   + + L+    +      +   +Y     ++L Q +   +  L+++          
Sbjct: 239 KAESLSFTGLI-GYLDYLKKNEQDTSSYELALWRKLMQPVSIAVMLLVALSFIFGPLRSV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  + +   I F +       I  + +    +  ++        I + +IKK+
Sbjct: 298 SMGARIVMGVITGIVFHLSDKIFGPIVLVYELSPVVGAVF-PSLLFIGISIYLIKKR 353


>gi|227538454|ref|ZP_03968503.1| permease YjgP/YjgQ family protein [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241736|gb|EEI91751.1| permease YjgP/YjgQ family protein [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 359

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 118/357 (33%), Gaps = 3/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           MK  + YI++    +F+ +      +  +  + ++++        ++ I+ +     IP 
Sbjct: 1   MKIIDWYIIKKYLSTFVFTMAIFTVVMVIFDVSEKLDNFLQYKAPISKIVFQYYAGFIPF 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L  ++P    +      + M   TE++ I + G S   +++P +  A L+    F+   
Sbjct: 61  YLNFLSPLINFIAVIFFTSKMADQTEIVPILSGGMSFNRMLRPYMIAASLIFAVTFVFNI 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I P+                           ++D + Y+ I  ++    +   F+++  
Sbjct: 121 YIIPRTNKMKVSFENVYVKPDKAGGSISATHMQIDSNTYVYIDNFDTRQKIGYNFVLEKF 180

Query: 180 DTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           D     +   A     D       + +      + + + +     K  TL  + ++    
Sbjct: 181 DGDRLKEKMIADRIRWDSVATKWKIENYTNRVINGLHERMDKADQKDTTLDMKPSDFEKY 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                  N   L             ++     E +KR        I  L+ +  + K  +
Sbjct: 241 DNMFTAMNTDELSKRIDKEETRGTGMMTELLLEKYKRYIYPFSAFILTLMGVSLSSK-KV 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                    + I+LS  + V   FS +       P  I ++   L  +S    LM K
Sbjct: 300 RGGIGLSLGLGIALSFVYIVLIQFSTMFSLKGGLPPLIAVMIPNLIFLSLGLYLMYK 356


>gi|145629200|ref|ZP_01784999.1| hypothetical protein CGSHi22121_10370 [Haemophilus influenzae
           22.1-21]
 gi|145639140|ref|ZP_01794747.1| hypothetical protein CGSHiII_03859 [Haemophilus influenzae PittII]
 gi|144978703|gb|EDJ88426.1| hypothetical protein CGSHi22121_10370 [Haemophilus influenzae
           22.1-21]
 gi|145271702|gb|EDK11612.1| hypothetical protein CGSHiII_03859 [Haemophilus influenzae PittII]
 gi|309750721|gb|ADO80705.1| Lipopolysaccharide export permease, LptG [Haemophilus influenzae
           R2866]
          Length = 358

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 117/356 (32%), Gaps = 1/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  IP  +
Sbjct: 3   NTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTIPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I     
Sbjct: 63  ETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     +   AKA    +   ++  ++ +            +             +  
Sbjct: 123 IPQTEQFARDTRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFDQQH 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              K+ +A   S   D     L        +      +    +++           + L+
Sbjct: 183 NLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAVSLR 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++S L +   +      + +  +   F +++ Q +   +  L+++           
Sbjct: 243 PTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRSVT 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                   I +   F V          +   P     L   L  I  I+ L+ +K+
Sbjct: 302 AGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKR 357


>gi|145635440|ref|ZP_01791141.1| predicted permease [Haemophilus influenzae PittAA]
 gi|145641037|ref|ZP_01796618.1| predicted permease [Haemophilus influenzae R3021]
 gi|145267314|gb|EDK07317.1| predicted permease [Haemophilus influenzae PittAA]
 gi|145274198|gb|EDK14063.1| predicted permease [Haemophilus influenzae 22.4-21]
          Length = 358

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 118/356 (33%), Gaps = 1/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  +P  +
Sbjct: 3   NTLDRYIGKSILGTIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTMPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I     
Sbjct: 63  ETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     + + AKA    +   ++  ++ +            +             +  
Sbjct: 123 IPQTEQFARDMRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFDQQH 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              K+ +A   S   D     L        +      +    +++           + L+
Sbjct: 183 NLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAVSLR 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++S L +   +      + +  +   F +++ Q +   +  L+++           
Sbjct: 243 PTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRSVT 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                   I +   F V          +   P     L   L  I  I+ L+ +K+
Sbjct: 302 AGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKR 357


>gi|149915564|ref|ZP_01904090.1| hypothetical protein RAZWK3B_06402 [Roseobacter sp. AzwK-3b]
 gi|149810456|gb|EDM70299.1| hypothetical protein RAZWK3B_06402 [Roseobacter sp. AzwK-3b]
          Length = 376

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 130/359 (36%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y++R +   F    L ++ I W+ + L+    +    +S  +LL++    +P V
Sbjct: 1   MTKFDQYVIRKLITLFAFFALILIAIFWLDKALRMFERLLGKGQSNWLLLELILLTLPPV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P        +V   ++   E+ I+  +G S   +I+P+    IL +  +    N 
Sbjct: 61  VASILPIASFASAVSVTNRLSSEAEITIMKASGCSTYRIIRPIFIFGILTTSLMAWLTNS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    +  L ++    +T S+L E  F      + + I K   +  L+ IF+ D RD
Sbjct: 121 ILPESGKRLSSLRSQVDQNITSSFLTEGEFLHPTPGVTLFIGKVTQDAELRRIFLSDRRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST- 237
            +   I  A+    +     +  ++ DG           + + +F+ Y L       +T 
Sbjct: 181 LRETIIITAEKAYTEHSPTTVQLLMVDGTTQILRENDNKLFVGRFEEYALDISELVETTY 240

Query: 238 -IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                        L+             L     E H R  Q +   I  ++        
Sbjct: 241 STQKTVTQAKTVELIKQPSEVIASTKATLGEVAFELHNRFAQPILCAIAAVLGATTLLTG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           +  R       I I+  +  G+    S +   +  +     ++Y+     + +   +I 
Sbjct: 301 SYSRFG-VWRQIGIAFFLLVGLKLVESAVSAHVLNDSGLWFLMYVPSISGAVLICTIIY 358


>gi|86608831|ref|YP_477593.1| YjgP/YjgQ family protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557373|gb|ABD02330.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 370

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 132/365 (36%), Gaps = 11/365 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y+   +    L        +  V ++      +   +     +L++    +P ++ 
Sbjct: 10  LLERYLFGEMLTPVLAGVAGGTLLLLVGRLFTLAERLVEGSVPPLTVLRLLVLDLPEMVV 69

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P      T   L  ++ N+E+  +   G     + +P+L + + +S+  F   N++ 
Sbjct: 70  LGMPIAAFFATMLTLGKLSGNSEITAMRAAGIPFSRIFRPLLLVGLAMSLSAFFISNVLL 129

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT- 181
           P  +  I+Q+  +A LA   + ++ ++FF+ +D+L+  I + +P         +   D  
Sbjct: 130 PASKQQIRQIDQQALLAQATTPVQYDVFFKTEDNLWFFIRQVDPRLNTMQDVTILRVDPL 189

Query: 182 ---QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSS 236
              +   +    +     +     L++G  H   P    I+   F    LQ         
Sbjct: 190 PGGKYQLVEVTLAAQAVWNGLEWSLSEGATHLYGPTGLSIAEQTFHRKPLQVSQDLAALM 249

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              +  ++ +L  L     +         +  R+EFH R +  L      LIS+      
Sbjct: 250 QPPVPPSELSLPEL-AERISRLARSNLNTQALRTEFHMRFSLPLASFFAVLISLPLG--S 306

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIK 355
              R+  +   +   + + FG +   S +   + +     P    + F  +     L++ 
Sbjct: 307 TTARRVGRYGGVVFGILLVFGYYVVLS-VSRSLGEVGALPPWAAAWSFNILFGGIGLVLL 365

Query: 356 KKYTK 360
            ++ +
Sbjct: 366 ARFLR 370


>gi|320107369|ref|YP_004182959.1| permease YjgP/YjgQ family protein [Terriglobus saanensis SP1PR4]
 gi|319925890|gb|ADV82965.1| permease YjgP/YjgQ family protein [Terriglobus saanensis SP1PR4]
          Length = 782

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/367 (12%), Positives = 122/367 (33%), Gaps = 19/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y++R    S  +     + ++ V    + I  +  +   L  +      LIP ++ 
Sbjct: 418 LLDDYVMREFLTSLALVLSSFLVLSVVFSFFELIGDIIRNRTPLVTVGGYLLNLIPYMIY 477

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +TP C  +     +  +NR++EL  +  +G S   ++ P+  LA +L++ LF  +++  
Sbjct: 478 SLTPLCALIAVLVTVGGLNRSSELTAMKASGMSLYRIVAPIFVLAAVLAVGLFAFDDLYL 537

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD---------DLYIKISKYNPNNTLQGI 173
           P+     + L ++ +     ++L  +  +               Y              +
Sbjct: 538 PQANRRQEALRSEIKGKPAQTFLRPDRKWISGQEANGSPTRIFYYQFFDSDKDVFANLTV 597

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           F          +  +A S   +   Q   + +G     +  S   +   F + T      
Sbjct: 598 FEFQPGSFLLQRRIFATSARWNPQVQQWEMENGWQRTFNHES-IATYQPFATSTFPEIHE 656

Query: 234 NSS--TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
             +      + + +     L+   ++           R + + ++   L  ++  + ++ 
Sbjct: 657 LPAYFKKESRPSQEMSYGDLSAYIHDLKQSGFDTMRLRVQLNHKIAYPLMTLVMAIFAVP 716

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCISS 348
            A       +R  +     ++ ++       S        N    P+L  +   L     
Sbjct: 717 FAMMMG---KRGSLAGYATAIGMAIAYQLIASVFESMGNVN-ALPPMLAAWSVDLLFALG 772

Query: 349 IFLLMIK 355
              L+++
Sbjct: 773 GTYLLLR 779



 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 54/363 (14%), Positives = 135/363 (37%), Gaps = 15/363 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVI-QILQRINLVSSSTESLNILLKISGYLIPT 59
           M+    YILR +    ++      F+ ++   +   + L    + + N + +I  Y +P 
Sbjct: 1   MRILTRYILREVVSHAMLGGALFTFVLFMQRDLGHILELAVRGSATPNDVGRILLYSLPA 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L    P    +     L  ++ ++E+  +  +G   +  ++ V    ++  +   ++  
Sbjct: 61  TLTFTIPMTVLVGILLGLGRLSADSEVTAMRASGFGVMQFVRVVSMSTVVALLVGLVNSL 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN---TLQGIFIV 176
            I PK  +++ +L    + +     ++  +F+    +  + +    P+      + +F+ 
Sbjct: 121 YIAPKSTASLLRLENDLKSSQASFEVQPRVFYEDFKNYVLYVQDTQPSQGATIWKHVFLA 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAII---LNDGEVHRKSPIS-KDISIMKFKSYTLQTES 232
           D     T  I  A    + + +Q  +     DG  H+ SP      +I  F    +  ++
Sbjct: 181 DLTQPATPYITTANQAVVAVGKQQTLRLHFMDGSTHQISPTDPNQYNISTFAENDVPMQA 240

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                I L  +D  ++ +           P+       E ++RL+  +  V+  L+ +  
Sbjct: 241 GQQEDIKLTRSDAPMAAMTAGQLWQAQPGPQRRAAM-IELNRRLSYPIACVVLMLVGVPL 299

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFS---YIIHKIEQNPYYIPILYLFLFCISSI 349
                  R+  K     +++ + F  ++  S    +  + + +P         LF  + +
Sbjct: 300 GLS---SRRGGKSTGFVLTIVLVFLYYFLSSVGVALAKQGKLHPVIGVWAANVLFGFAGV 356

Query: 350 FLL 352
            LL
Sbjct: 357 LLL 359


>gi|256425866|ref|YP_003126519.1| permease YjgP/YjgQ family protein [Chitinophaga pinensis DSM 2588]
 gi|256040774|gb|ACU64318.1| permease YjgP/YjgQ family protein [Chitinophaga pinensis DSM 2588]
          Length = 359

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 115/359 (32%), Gaps = 2/359 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILL-KISGYLIPT 59
           M   + YILR    +F+ S + ++ I+ VI + ++I+   S+  S   ++       IP 
Sbjct: 1   MTKIDWYILRKFIGTFIYSLMILLVISVVIDVTEKIDDFMSNNLSFYTIVVDYYFGFIPH 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +  ++ P    +      + M   TE++ I  +G S    ++P    A L    L++   
Sbjct: 61  IAALLFPLFIFISVIFFTSKMAYRTEIVAILCSGVSFRRFLRPYWVGAFLFGGLLWLGNR 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS- 178
              P       +  A+            +   R+D   Y+    Y+PN      F+ +  
Sbjct: 121 WTVPVANKIRTKFEAEYVHKKKAQLNMYDKTIRVDSFTYVTFGSYDPNYKSGSNFLYEDV 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           R         A   S D       L+   +   + + +        +  +          
Sbjct: 181 RGQNIKFKMKADRISWDSVAGKWKLDYVTMRAINGLKERWWSKTDTTIKIPLNPKEMYEE 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L            E L T+  E ++R       VI  LI  + A K+  
Sbjct: 241 KNIQEAMTTPELDTYIAREELKGAEGLNTFYVEKYRRTASSGAVVILTLIGGIIASKKVR 300

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 +    +  +         +    K + NP     +  FLF   + +L +   K
Sbjct: 301 GGSGLHLAVGIVISASYIIFLQFSTVFSIKADLNPLLAVWIPNFLFGGLAFWLYLRAPK 359


>gi|218778207|ref|YP_002429525.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759591|gb|ACL02057.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 398

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/362 (16%), Positives = 118/362 (32%), Gaps = 11/362 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+L  +   F ++ L    I  + ++LQ  + V +    L  ++ +  Y +P  L 
Sbjct: 6   IVFKYMLGEMLPPFGVTLLVFALIFLMTRMLQLTDYVVNFRVGLGHVMMLLMYSMPFFLI 65

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P    M        M+ + E+  +   G S  +L+ PVL      ++       I  
Sbjct: 66  FVIPMSTMMAVLLTFLRMSSDNEITALKAAGWSLYSLLPPVLAFCTAAALLTASMSFIGL 125

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT 181
           P  R   K+L            L+E  F R   ++ + +   +  + TL  +FI D RD 
Sbjct: 126 PWGRMAAKELLIDVARQNVEIGLKERSFERTFKNVVLYVGSVDVESRTLHHVFIEDRRDK 185

Query: 182 QTHKIYYAQSGSIDLDR----QAIILNDGEVHRKSPISKDISIMKFKSYTLQT---ESAN 234
           Q      A +G I          + LNDG + R       +  + F SY        +  
Sbjct: 186 QLSSTIMASTGRIIPSDGDDIWQLRLNDGVIVRADRKKSSMFTVNFDSYDFNLNLGTALG 245

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +        +     LL                   E HK+ +     ++ GL ++    
Sbjct: 246 ARDGEKDEEEMYFKELLTFVKRYNKKDDRYYLALL-EVHKKFSIPFSCIVLGLAAVPLGI 304

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                R+   +        + + +           +  P     +++    I ++    +
Sbjct: 305 VSRSARRSFGVALGLGLFLLYYLLLSAGWVFGEAGKYPPMI--GMWVPNLVIGAMGGFSL 362

Query: 355 KK 356
            +
Sbjct: 363 VR 364


>gi|148827126|ref|YP_001291879.1| permease [Haemophilus influenzae PittGG]
 gi|148718368|gb|ABQ99495.1| predicted permease [Haemophilus influenzae PittGG]
          Length = 358

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 118/356 (33%), Gaps = 1/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  +P  +
Sbjct: 3   NTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTMPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I     
Sbjct: 63  ETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     + + AKA    +   ++  ++ +            +             +  
Sbjct: 123 IPQTEQFARDMRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFDQQH 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              K+ +A   S   D     L        +      +    +++           + L+
Sbjct: 183 NLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAVSLR 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++S L +   +      + +  +   F +++ Q +   +  L+++           
Sbjct: 243 PTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRSVT 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                   I +   F V          +   P     L   L  I  I+ L+ +K+
Sbjct: 302 AGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKR 357


>gi|309972901|gb|ADO96102.1| Lipopolysaccharide export permease, LptG [Haemophilus influenzae
           R2846]
          Length = 358

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 119/356 (33%), Gaps = 1/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  +P  +
Sbjct: 3   NTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTMPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I     
Sbjct: 63  ETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     + + AKA  + +   ++  ++ +            +             +  
Sbjct: 123 IPQTEQFARDMRAKALSSGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFDQQH 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              K+ +A   S   D     L        +      +    +++           + L+
Sbjct: 183 NLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAVSLR 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++S L +   +      + +  +   F +++ Q +   +  L+++           
Sbjct: 243 PTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRSVT 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                   I +   F V          +   P     L   L  I  I+ L+ +K+
Sbjct: 302 AGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKR 357


>gi|229845238|ref|ZP_04465371.1| predicted permease [Haemophilus influenzae 6P18H1]
 gi|229811833|gb|EEP47529.1| predicted permease [Haemophilus influenzae 6P18H1]
          Length = 358

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/356 (12%), Positives = 120/356 (33%), Gaps = 1/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + YI + I  +   + + +V ++ VI+ +++   V   T  +   +  +G  +P  +
Sbjct: 3   NTLDRYIGKSILGAIFATLMTLVGLSAVIKFVEQFRSVGKGTYDIWQAVIFTGLTMPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     L ++   +EL+++ + G SR  +   V+  A+ L +F  I     
Sbjct: 63  ETFFPMAALLGALIALGNLASRSELVVMQSAGFSRFKIGMAVMKTALPLVVFTMIIGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     + + AKA    +   ++  ++ +  ++        +             +  
Sbjct: 123 IPQTEQFARDMRAKALSGGSILSIKNGVWAKDGNNFVFVRRVTDDAKLDDIYIYTFDQQH 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              ++ ++   S   D     L        +      +    +++           + L+
Sbjct: 183 NLTELKHSNQASYSEDEAKWTLRQVNHSTITKDEIITTNHLLETWETSLTPDKLGAVSLR 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++S L +   +      + +  +   F +++ Q +   +  L+++           
Sbjct: 243 PTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPISVGVMMLLALSFIFGSLRSVT 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                   I +   F V       +  +   P     L   L  I  I+ L+  K+
Sbjct: 302 AGARIVTGICVGFLFYVVNEILGQMSVVYGIPAIFGALIPSLLFIVMIWWLLSHKR 357


>gi|109899862|ref|YP_663117.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
 gi|109702143|gb|ABG42063.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
          Length = 368

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 121/365 (33%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++   +S     L ++ I    + ++ ++  S+     +++L      +P +  
Sbjct: 2   LIFRYLVKETVKSQTAVFLVLMAIFITNKFVRVLSEASNGDIPASLVLGFLALSMPVLAS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +  ++E+ ++   G S   + + +L LA+++++        I 
Sbjct: 62  LILPLSLFLGIMLAHGRLYVDSEMTVMRACGISEWYVTRVMLVLAVIMALITGAMTLWIA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQGIFIVDS 178
           P       QL  +A      + L    F +  ++       +I   +       +   D+
Sbjct: 122 PLSVEREYQLEEQAGADTGLTTLIPGRFQQTANEKAVIFVHEIGNDSEPLKRVFMAQHDT 181

Query: 179 RDTQTHKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                +             +    + ++L DG  +  +   KD  +++F  Y +Q     
Sbjct: 182 TTDSQNVHLVYAKQGGLRELPDGSETLVLGDGIQYEGTLGEKDYRVVEFGEYQIQIAEQE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +     K +      L   +  +            +E   R    L      +I++    
Sbjct: 242 AEQKRRKLSAYTTMQLFEDSSIDA----------IAELQWRFAIPLSLFFLVIIAVPL-- 289

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLL 352
             A   ++ +   +F +L +  G F         +   + P  + + ++          L
Sbjct: 290 -SAADPRQGRFGKMFPALMLYLGYFLLLLAGRKVLEDGKIPPMLGLWWVHAVIGIIGMTL 348

Query: 353 MIKKK 357
           + K +
Sbjct: 349 IFKGR 353


>gi|83814343|ref|YP_445251.1| hypothetical protein SRU_1124 [Salinibacter ruber DSM 13855]
 gi|83755737|gb|ABC43850.1| membrane protein, putative [Salinibacter ruber DSM 13855]
          Length = 410

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 123/365 (33%), Gaps = 12/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK-ISGYLIPT 59
           M +FE +I++ + + F++    ++    V+  ++  +       ++  +        +P 
Sbjct: 50  MSTFERHIIKRLLKGFVLFVGALLVFFIVLHWVEYSDDFLDGGATIWEVFTVFYPNYVPE 109

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ + +P    +    +  ++ +  +L+ +  +G S   L++P L + +L+++F+F    
Sbjct: 110 IIRLTSPLALFLSCIYLTGTLAQELQLVALQTSGVSLYQLMRPYLGVGLLVTVFMFGFNG 169

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + PK    + +   +       S     +  R   +  + +  Y+ +        +   
Sbjct: 170 WVVPKTNEVVVRYENEYLPGNQKSVQTSEIHRRNGPNSILSVGYYDADRERAHTVSLQQL 229

Query: 180 DTQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANSS 236
                      +  ++ D   +   L+D          ++    +     TLQ    + +
Sbjct: 230 AGDARLARRVDANRMEWDDSLEVWRLDDVTRRTFVKGETQRKRTIASLDTTLQVYPRDLA 289

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                     +                 L      ++ +       ++  LI +  A   
Sbjct: 290 RSKNDVAAMTIPAAAEYLAALRRSGVGGLTRPLVAYYNKFAYPFANLLLVLIGVPIA--- 346

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLL 352
           +  R+  +     I L I+F V+     +   +       P    +L    F + ++ +L
Sbjct: 347 STRRRGGQAVRFAIGLLIAF-VYLSVQKLAEPLGYAGTLSPAWTAWLPHLTFAVVALLVL 405

Query: 353 MIKKK 357
              +K
Sbjct: 406 WWARK 410


>gi|301170458|emb|CBW30065.1| conserved inner membrane protein [Haemophilus influenzae 10810]
          Length = 358

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 118/356 (33%), Gaps = 1/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  IP  +
Sbjct: 3   NTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTIPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I     
Sbjct: 63  ETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     + + AKA    +   ++  ++ +            +             +  
Sbjct: 123 IPQTEQFARDMRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFDQQH 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              K+ +A   S   D     L        +      +    +++           + L+
Sbjct: 183 NLIKLKHANQASYSEDEAKWTLRQVNHSTITKEEIITTNHLSETWETSLTPDKLGAVSLR 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++S L +   +      + +  +   F +++ Q +   +  L+++           
Sbjct: 243 PTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRSVT 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                   I +   F V          +   P     L   L  I  I+ L+ +K+
Sbjct: 302 AGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKR 357


>gi|15642495|ref|NP_232128.1| hypothetical protein VC2499 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|227082618|ref|YP_002811169.1| putative Inner membrane protein [Vibrio cholerae M66-2]
 gi|229507443|ref|ZP_04396948.1| hypothetical protein VCF_002672 [Vibrio cholerae BX 330286]
 gi|229509632|ref|ZP_04399113.1| hypothetical protein VCE_001032 [Vibrio cholerae B33]
 gi|229516757|ref|ZP_04406203.1| hypothetical protein VCC_000774 [Vibrio cholerae RC9]
 gi|229606949|ref|YP_002877597.1| hypothetical protein VCD_001858 [Vibrio cholerae MJ-1236]
 gi|254851044|ref|ZP_05240394.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744522|ref|ZP_05418474.1| putative membrane protein [Vibrio cholera CIRS 101]
 gi|298500670|ref|ZP_07010474.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9657080|gb|AAF95641.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|227010506|gb|ACP06718.1| putative Inner membrane protein [Vibrio cholerae M66-2]
 gi|229345820|gb|EEO10792.1| hypothetical protein VCC_000774 [Vibrio cholerae RC9]
 gi|229353106|gb|EEO18045.1| hypothetical protein VCE_001032 [Vibrio cholerae B33]
 gi|229354948|gb|EEO19869.1| hypothetical protein VCF_002672 [Vibrio cholerae BX 330286]
 gi|229369604|gb|ACQ60027.1| hypothetical protein VCD_001858 [Vibrio cholerae MJ-1236]
 gi|254846749|gb|EET25163.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255738047|gb|EET93440.1| putative membrane protein [Vibrio cholera CIRS 101]
 gi|297540839|gb|EFH76896.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 356

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 122/355 (34%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +       +           +  D + +I I+K    +           + 
Sbjct: 123 APQAQ-KMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVENEHLYGLNLWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   + +++      + + ++ +       + I      +    +         + + +K
Sbjct: 182 KLSTVIFSEQVDYVANNEWLMKDAVLTRLVNDIEISKESLPEYRWRTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +L+ L +   +      +    Y     +++TQ +   +  L+++           
Sbjct: 242 PEELSLTGL-SDYVHYLKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    SF +   F   +  +   P     L   L  ++    L+ +K
Sbjct: 301 MGARILSGVIAGFSFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 355


>gi|254491744|ref|ZP_05104923.1| putative permease, YjgP/YjgQ family [Methylophaga thiooxidans
           DMS010]
 gi|224463222|gb|EEF79492.1| putative permease, YjgP/YjgQ family [Methylophaga thiooxydans
           DMS010]
          Length = 354

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 119/358 (33%), Gaps = 7/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI + I  S L+  L ++ +   +  +  ++ +      +  +L      +P  
Sbjct: 1   MKILQRYIAKNIIASTLLVLLVLLGLYTFMDFITELDDLGKGNYQILDILSYLALTMPKR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    M +   L ++   +EL+ +   G S   + K VL +A LL +   +   +
Sbjct: 61  IYELLPVAALMGSVIGLGNLASQSELVAMRAAGVSIKDINKAVLIVAGLLVVVALVMGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P       +         T     E  F+  D + +  I + N + +   + I +  D
Sbjct: 121 FRPIAEQK-ARQMQSVSQTGTVGSRSEYGFWTRDGNHFNHIERINADGSFSNVAIYEFDD 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +I      + +  + + IL+D           ++S +    +  Q      + +V+
Sbjct: 180 KHRLRILTQAVAA-EYQQDSWILSDVVQSTIDEKGVEVSSVAHARWKSQLNPGMVNIVVV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                 +  LL           + +  Y   F  ++   L   +  L+++          
Sbjct: 239 PPEFLPVWDLL-EYVQYLKRNHQSVAQYELAFWSKMMMPLSTAVMVLLAVPFVFGPLRST 297

Query: 301 QRKKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                      L I F +F   F ++       P+        +F   +    ++  +
Sbjct: 298 PIGGRVLAGTLLGIGFHLFNQSFQHMGLVFGLLPWLASAFPTMVFAGLA---WLMNSR 352


>gi|229521564|ref|ZP_04410982.1| hypothetical protein VIF_002100 [Vibrio cholerae TM 11079-80]
 gi|229341158|gb|EEO06162.1| hypothetical protein VIF_002100 [Vibrio cholerae TM 11079-80]
          Length = 356

 Score =  117 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 121/355 (34%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +       +           +  D + +I I+K                + 
Sbjct: 123 APQAQ-KMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVENEQLYGLNLWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   + +++      + + ++ +       + I      +    +         + + +K
Sbjct: 182 KLSTVIFSEQVDYVANNEWLMKDAVLTRLVNDIEISKESLPEYRWRTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +L+ L +   +      +    Y     +++TQ +   +  L+++           
Sbjct: 242 PEELSLTGL-SDYVHYLKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    SF +   F   +  +   P     L   L  ++    L+ +K
Sbjct: 301 MGARILSGVIAGFSFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 355


>gi|319776037|ref|YP_004138525.1| inner membrane protein [Haemophilus influenzae F3047]
 gi|329123195|ref|ZP_08251764.1| YjgP/YjgQ family membrane protein [Haemophilus aegyptius ATCC
           11116]
 gi|317450628|emb|CBY86848.1| conserved inner membrane protein [Haemophilus influenzae F3047]
 gi|327471540|gb|EGF16984.1| YjgP/YjgQ family membrane protein [Haemophilus aegyptius ATCC
           11116]
          Length = 358

 Score =  117 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 118/356 (33%), Gaps = 1/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  IP  +
Sbjct: 3   NTLDRYIGKSILGAIFSTLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTIPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I     
Sbjct: 63  ETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     + + AKA    +   ++  ++ +            +             +  
Sbjct: 123 IPQTEQFARDMRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFEQQH 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              K+ +A   S   D     L        +      +    +++           + L+
Sbjct: 183 NLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAVSLR 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++S L +   +      + +  +   F +++ Q +   +  L+++           
Sbjct: 243 PTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRSVT 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                   I +   F V          +   P     L   L  I  I+ L+ +K+
Sbjct: 302 AGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKR 357


>gi|86605800|ref|YP_474563.1| YjgP/YjgQ family protein [Synechococcus sp. JA-3-3Ab]
 gi|86554342|gb|ABC99300.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
           JA-3-3Ab]
          Length = 376

 Score =  117 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 124/356 (34%), Gaps = 16/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y+   +    L        +    ++      +   +     +L++    +P ++ 
Sbjct: 10  LLERYLFGQMLTPVLAGIAGGTLLLLAGRLFTLAERLVEGSVPPLTVLRLLILDLPEMVL 69

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P      T   L  ++ N+E+  +   G     + +P+L + +L+S+  F   N++ 
Sbjct: 70  LGMPIAAFFATMLTLGKLSGNSEITAMRAAGIPFTRIFRPLLLVGLLMSLSAFWISNVLL 129

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRL------DDDLYIKISKYNPNNTLQGIFIV 176
           P  +  I+Q+  +A LA   + ++ ++FFR       +D+L+  I + +P         +
Sbjct: 130 PASKREIRQIDQQALLARATTPVQYDVFFRTARVGGTEDNLWFFIRQVDPRLNTMQDVTI 189

Query: 177 DSRDTQTHKIYYAQS----GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
              D      Y             +     L++G  HR  P    ++   F    L+   
Sbjct: 190 LQVDPLPGGKYQLAEVTLAAQAVWNGLDWTLSEGVTHRYGPDGLSLAEEPFDRKPLEVSQ 249

Query: 233 A--NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                    +  N+ +L  L     +         +  R+EFH R +  L      LIS+
Sbjct: 250 DLAALMQPPVPPNELSLPEL-AERISRLARSNLNTQPLRTEFHMRFSLPLASFFAVLISL 308

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
                    R+  +   +   + + F  +   S +   + +     P    + F I
Sbjct: 309 PLG--STTARRVGRYGGVVFGILLVFAYYVVLS-VSRSLGEAGALPPWAAAWSFNI 361


>gi|258622809|ref|ZP_05717827.1| Predicted permease [Vibrio mimicus VM573]
 gi|258584997|gb|EEW09728.1| Predicted permease [Vibrio mimicus VM573]
          Length = 356

 Score =  117 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 122/355 (34%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIVVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +       +           +  D + +I I K +    +           
Sbjct: 123 APQAQ-KLARDMRAFATSGGAIMSVRTGVWARDANDFIFIGKVDNEQLIGMNLWRFDEHK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   + +A+      + + ++ +       + I      +    +         + + +K
Sbjct: 182 KLSTVIFAEQVDYVGNNEWLMKDAQLTRMVNEIEISKDTLPEYRWRTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +   +      +    Y   F +++TQ +   +  L+++           
Sbjct: 242 PEELSLSGL-SDYVHYLKASEQDSSRYELAFWRKMTQPISIAVMMLMALSFIFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   +  +   P     +   L  ++    L+ +K
Sbjct: 301 MGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGAVAPSLVFLAIALGLLGRK 355


>gi|150021419|ref|YP_001306773.1| permease YjgP/YjgQ family protein [Thermosipho melanesiensis BI429]
 gi|149793940|gb|ABR31388.1| permease YjgP/YjgQ family protein [Thermosipho melanesiensis BI429]
          Length = 1096

 Score =  117 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 122/356 (34%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    YIL+     F+M     V  A V  + Q  +++      +  L ++  Y +P  
Sbjct: 1   MRVLTKYILKLSIGPFIMGVAAFVLFASVELLYQLSDIIVRHRVGILKLFELIYYNLPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P         VL+ +  + E+  +   G     L+ P   L++L  +F F   + 
Sbjct: 61  VSMGIPVGVLFSIFWVLSQLYSSKEITAMLVHGIPSRKLVYPFFLLSVLFGLFAFYLNDQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P       +  +K         + EN+  ++D+  Y  + +Y+ ++ +    ++    
Sbjct: 121 MVPTFNHKAMKTISKYVYKRPEISIRENVLTKIDESQYFFVKRYDQSSGILYDVVLFQHI 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
               +I  A+   +  D     L +G+++           + F   +L  +    +   +
Sbjct: 181 QGEERIITAEK--VQKDEGKWFLINGKMYVTDKDGFLKFDVNFSKISLDLKDDLESLMRV 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                D     L N               +  E H R    + P I  ++ +  +    L
Sbjct: 239 GKSPRDMTGDELKNKIKTFRKL-GVDPSPWIVELHGRYANSVGPFIITILGVPLSLLFGL 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +   +   F  + +  G     S +  +   NP         +F    +FL ++
Sbjct: 298 KSKSWSVIFTFAIVILYQGSGAWISAMGKENLLNPVLAAWFPNLVFISVGLFLFLM 353


>gi|52842835|ref|YP_096634.1| permease [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629946|gb|AAU28687.1| permease [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 356

 Score =  117 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/356 (11%), Positives = 104/356 (29%), Gaps = 3/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI + +  +  +  L +V +   I  + +I+ +  +   +          +P  +
Sbjct: 4   KILDRYIAKTVLSAIGLVTLMLVGLQIFILFVNQIDDLGRADYGIVQAGVFVLLQMPYQV 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +  ++EL+++   G S   +   VL  ++++ + +      I
Sbjct: 64  YLFFPIASLLGCLVGLGVLANHSELVVMRAAGISIGQITGAVLKASLIVILLITSLGETI 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P       +    A            ++ R  +D     S  + N              
Sbjct: 124 VPVMAHYANEYKVSALTGGQALLTPRGVWVRNGNDFVSIASVTHENTLRYVNQFRFDNQH 183

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                          +  + I  D +    +             + +  +          
Sbjct: 184 NLKLARQISEVKYVNN--SWIAYDVKQTEFAEDHTKAHHFDTLPWDVPVKPEILKITGTN 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            ++  L  L N          + +  Y+  F +R+TQ L  ++  +++I           
Sbjct: 242 PDEMTLHEL-NRYLREQQRNHQNVANYKFAFFQRITQPLNTMVMMILAIPFIFGPLRSST 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 +   +   F +   F   +  + Q P  +      L        LM + +
Sbjct: 301 MGSKLLVGAMVGFGFHILNRFFGPVSTVFQWPPELAAFSPTLIFSLIGIYLMRRVR 356


>gi|289623814|ref|ZP_06456768.1| hypothetical protein PsyrpaN_01505 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|298485820|ref|ZP_07003898.1| putative membrane protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298159644|gb|EFI00687.1| putative membrane protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330867847|gb|EGH02556.1| hypothetical protein PSYAE_11466 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330890524|gb|EGH23185.1| hypothetical protein PSYMO_17663 [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330989712|gb|EGH87815.1| hypothetical protein PLA107_32131 [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009019|gb|EGH89075.1| hypothetical protein PSYTB_04820 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 353

 Score =  117 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 110/355 (30%), Gaps = 4/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +  +   +  +  + S T +L   L       P  
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDI-SDTYTLADALSYVMLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++  ++EL I+   G S   ++  V+   +LL +   +    
Sbjct: 60  VYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ +         L+ R  D+     +       L          
Sbjct: 120 VAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINTVQPNGLMLGVTRYRFDDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+  +   D     L D      +    ++     + + +       ST+++
Sbjct: 180 RHMLTSSFAKEANFKTD--YWELKDVSTTHFNDGRTEVINTPVERWDVALSPQLLSTVIM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                ++S L N   +    +      Y   F  ++ Q    V   L++I          
Sbjct: 238 PPESLSISGLWN-YAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +     + +  +F +          +   P  + +L     C  +   L+ +
Sbjct: 297 TLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLMPAAACALAGVYLLRR 351


>gi|294507117|ref|YP_003571175.1| conserved hypothetical protein, membrane [Salinibacter ruber M8]
 gi|294343446|emb|CBH24224.1| conserved hypothetical protein, membrane [Salinibacter ruber M8]
          Length = 410

 Score =  117 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 123/365 (33%), Gaps = 12/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK-ISGYLIPT 59
           M +FE +I++ + + F++    ++    V+  ++  +       ++  +        +P 
Sbjct: 50  MSTFERHIIKRLLKGFVLFVGALLVFFIVLHWVEYSDDFLDGGATIWEVFTVFYPNYVPE 109

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ + +P    +    +  ++ +  +L+ +  +G S   L++P L + +L+++F+F    
Sbjct: 110 IIRLTSPLALFLSCIYLTGTLAQELQLVALQTSGVSLYQLMRPYLGVGLLVTVFMFGFNG 169

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + PK    + +   +       S     +  R   +  + +  Y+ +        +   
Sbjct: 170 WVVPKTNEVVVRYENEYLPGNQKSVQTSEIHRRNGPNSILSVGYYDADRERAHTVSLQQL 229

Query: 180 DTQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANSS 236
                      +  ++ D   +   L+D          ++    +     TLQ    + +
Sbjct: 230 AGDARLARRVDANRMEWDDSLEVWRLDDVTRRTFVKGETQRKRTIASLDTTLQVYPRDLA 289

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                     +                 L      ++ +       ++  LI +  A   
Sbjct: 290 RSKNDVAAMTIPAAAEYLAALRRSGVGGLTRPLVAYYNKFAYPFANLLLVLIGVPIA--- 346

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLL 352
           +  R+  +     I L I+F V+     +   +       P    +L    F + ++ +L
Sbjct: 347 STRRRGGQAVRFAIGLLIAF-VYLSVQKLAEPLGYAGTLSPAWTAWLPHLTFAVVALLVL 405

Query: 353 MIKKK 357
              +K
Sbjct: 406 WWARK 410


>gi|289649165|ref|ZP_06480508.1| hypothetical protein Psyrpa2_15669 [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 353

 Score =  117 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 110/356 (30%), Gaps = 4/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +  +   +  +  + S T +L   L       P  
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDI-SDTYTLADALSYVMLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++  ++EL I+   G S   ++  V+   +LL +   +    
Sbjct: 60  VYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ +         L+ R  D+     +       L          
Sbjct: 120 VAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINTVQPNGLMLGVTRYRFDDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+  +   D     L D      +    ++     + + +       ST+++
Sbjct: 180 RHMLTSSFAKEANFKTD--YWELKDVSTTHFNDGRTEVINTPVERWDVALSPQLLSTVIM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                ++S L N   +    +      Y   F  ++ Q    V   L++I          
Sbjct: 238 PPESLSISGLWN-YAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              +     + +  +F +          +   P  + +L     C  +   L+ + 
Sbjct: 297 TLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLMPAAACALAGVYLLRRS 352


>gi|301060831|ref|ZP_07201645.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
 gi|300445080|gb|EFK09031.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
          Length = 383

 Score =  117 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 145/365 (39%), Gaps = 16/365 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   YI R I  +FL S    +FI    ++L    L+ +    L+ +  +  +LIP +L 
Sbjct: 2   TLYRYIFREIWPTFLASLFVFIFIMMAARMLSITELIVTRGVHLSQVAGMVLFLIPDILT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    M        ++ ++E++ + ++G S   ++ PV+F ++   +          
Sbjct: 62  FALPAVTLMSVVVAFLRLSADSEIIAMKSSGISLYQMLPPVIFFSLAACLACVAISTFAA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL-QGIFIVDSRDT 181
           P    + K L  K         ++E +F    ++L   ++ ++    + + +F+VD RD 
Sbjct: 122 PWGNRSFKDLLFKIAETKADLGIKERIFCEPFENLVFYVNSFSREERMLKDVFVVDRRDQ 181

Query: 182 QTHKIYYAQSGSIDLDR----QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA---- 233
           +      +    I          ++   G +       +    +KF +Y L         
Sbjct: 182 EMTNTIVSDEAQIIPRPAERTITLLFLKGTIFMVEKNFEGSRTIKFNTYALNIGLKDVLA 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           + ++     ++ +++ L++   + PN   E     R E  ++L+  L     G+I +   
Sbjct: 242 DLASRKKAPHELSVNQLISKLKSTPNTDKEYSRIMR-ELLEKLSIPLAVFFMGIIGVPL- 299

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFL 351
              A +R R +   + +SL + F +++ F  II  I       P   +++    +    +
Sbjct: 300 --GAQIRGRGRSAGVGVSLVV-FALYYLFLMIIRSIASTGALSPAFAVWIPDLFLIVSVV 356

Query: 352 LMIKK 356
            ++++
Sbjct: 357 YLLRR 361


>gi|71737643|ref|YP_273426.1| hypothetical protein PSPPH_1159 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558196|gb|AAZ37407.1| membrane protein, putative [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320322887|gb|EFW78978.1| hypothetical protein PsgB076_20532 [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329804|gb|EFW85792.1| hypothetical protein PsgRace4_11126 [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 353

 Score =  117 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 110/355 (30%), Gaps = 4/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +  +   +  +  + S T +L   L       P  
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDI-SDTYTLADALSYVMLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++  ++EL I+   G S   ++  V+   +LL +   +    
Sbjct: 60  VYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ +         L+ R  ++     +       L          
Sbjct: 120 VAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGEEFIHINTVQPNGLMLGVTRYRFDDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+  +   D     L D      +    ++     + + +       ST+++
Sbjct: 180 RHMLTSSFAKEANFKTD--YWELKDVSTTHFNDGRTEVINTPVERWDVALSPQLLSTVIM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                ++S L N   +    +      Y   F  ++ Q    V   L++I          
Sbjct: 238 PPESLSISGLWN-YAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +     + +  +F +          +   P  + +L     C  +   L+ +
Sbjct: 297 TLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLMPAAACALAGVYLLRR 351


>gi|119486322|ref|ZP_01620381.1| hypothetical protein L8106_16749 [Lyngbya sp. PCC 8106]
 gi|119456535|gb|EAW37665.1| hypothetical protein L8106_16749 [Lyngbya sp. PCC 8106]
          Length = 392

 Score =  117 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/367 (14%), Positives = 137/367 (37%), Gaps = 21/367 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + YI+  +   FL        +A  I  +   +  V+ S   + I ++I    +P 
Sbjct: 19  LSILDRYIISELIAPFLFGVGLFTSVALSIDTVFDLVRKVAESGLDVGIAMQIFLLKMPE 78

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    + T  V   M+ ++E++ + + G S   L+ P L  ++ ++  +F+   
Sbjct: 79  FVVLSFPMSMVLTTLIVYGRMSSDSEIVALRSCGISIYRLVIPTLIFSLFITASMFVFNE 138

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-------------YIKISKYNP 166
           +I P           +A         EEN+F+     +              +  ++   
Sbjct: 139 LIVPATNYRASITLEQALHQDRLPVQEENIFYPEYRTIPIEDSDEEITILVRLFYAQEFD 198

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
              +  + I+D       +I  ++S   +  +Q+    DG V+   P     +I++F   
Sbjct: 199 GKYMNEVTILDKSQQGITQIISSESAVWNGKQQSWDFFDGTVYMIDPKGSYRNIIRFDHK 258

Query: 227 TLQTE--SANSSTIVLKANDQNLSFLLNPNPNNPNY-RPELLETYRSEFHKRLTQWLFPV 283
            L+      + ++   + ++ N+           +    ++++  +    ++ +     V
Sbjct: 259 ELKLPRVPLDLASRKRRYDEMNIVQAHEYLELMKSSGNEKIVQKTKVRIQQKYSLPFVCV 318

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +FGL+        +  ++  +     IS+ I F  ++  ++I   + Q     P L  +L
Sbjct: 319 VFGLLGAAL---GSQHQRTNRSTSFGISIVIIFS-YYMLAFITGAMGQKAIISPFLAGWL 374

Query: 344 FCISSIF 350
             +  + 
Sbjct: 375 PIVIGLG 381


>gi|16330198|ref|NP_440926.1| hypothetical protein slr0882 [Synechocystis sp. PCC 6803]
 gi|1652686|dbj|BAA17606.1| slr0882 [Synechocystis sp. PCC 6803]
          Length = 394

 Score =  117 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/366 (12%), Positives = 125/366 (34%), Gaps = 20/366 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + Y+   +   F+        +A  +  +   +  V+ S   ++I +KI    +P 
Sbjct: 20  LSVMDRYLFVELFLPFIFGMGMFTSLALSIGTLFDLVRRVTESGLPMDIAVKILFLKMPE 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    + +    + ++ ++EL+ + + G S   L+ P L   I+++   F+  +
Sbjct: 80  FVVLAFPMSMLLASLMAYSRLSSDSELIALRSIGVSIYRLVVPALLFGIVVTGIAFVFND 139

Query: 120 IIEPKCRSTIK------------QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN 167
            I P                       +  +   +  + +      +    +  ++    
Sbjct: 140 RITPAASYEALATLDRAIHQDRPPRQEQNIIYPEYGMVRQPDGNEKNILKRLFYAEEFNG 199

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
           + ++G+ I+D   +  +++  A+  S ++        DG V+  +P     +I++F+   
Sbjct: 200 SEMKGLTILDRTQSGVNQVLTAERASWNISENTWDFYDGTVYLIAPDGSYRNIVRFRHQQ 259

Query: 228 LQTE--SANSSTIVLKANDQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFPVI 284
           L       + ++   K  +  ++           +   + +        K+        +
Sbjct: 260 LALPRAPLDLASQERKDGEMTIAQSRRYLEVLRLSGDDKKVRKLEVRIQKKYALPFVCFV 319

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           FGLI      +        K     I + + F  ++  S++   +       P    +L 
Sbjct: 320 FGLIGAAIGVRPQNT---NKATSFGICVGLIFF-YYLLSFLSESMGIWGALDPFTAAWLP 375

Query: 345 CISSIF 350
               + 
Sbjct: 376 NFLGLI 381


>gi|229527564|ref|ZP_04416956.1| hypothetical protein VCG_000633 [Vibrio cholerae 12129(1)]
 gi|229335196|gb|EEO00681.1| hypothetical protein VCG_000633 [Vibrio cholerae 12129(1)]
 gi|327484987|gb|AEA79394.1| Predicted Permease [Vibrio cholerae LMA3894-4]
          Length = 356

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 121/355 (34%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +       +           +  D + +I I+K                + 
Sbjct: 123 APQAQ-KMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVENEQLYGLNLWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   + +++      + + ++ +       + I      +    +         + + +K
Sbjct: 182 KLSTVIFSEQVDYVANNEWLMKDAVLTRLVNDIEISKESLPEYRWRTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +L+ L +   +      +    Y     +++TQ +   +  L+++           
Sbjct: 242 PEELSLTGL-SDYVHYLKASEQDTSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   +  +   P     L   L  ++    L+ +K
Sbjct: 301 MGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 355


>gi|126667525|ref|ZP_01738495.1| predicted Permease [Marinobacter sp. ELB17]
 gi|126627951|gb|EAZ98578.1| predicted Permease [Marinobacter sp. ELB17]
          Length = 382

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/375 (12%), Positives = 126/375 (33%), Gaps = 29/375 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +     Y++R I  S +     ++ +    + L+ +   +    S  +L  +  Y  P  
Sbjct: 13  LTIIFRYLIRQIMISMIAVSTILLMVFMSGRFLKYLGNAAEGEISAGVLFSVMAYRFPGF 72

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +        M   +E+ ++   G S   +++  L  ++ + + +      
Sbjct: 73  LELILPLGLFIGILLAYGRMYLESEMTVLLACGVSEGDILRQTLIGSLPVMLVVAAMSLY 132

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL--DDDLYIKISKYNPNNTLQGIFIVDS 178
           + P     ++++  + + A  F  L    F        +       +    LQG+FI + 
Sbjct: 133 VSPWGMKQVEEIFNEQRKATEFELLAPGRFQDFTSGGRVTYTEGLSDDKRELQGVFIAEF 192

Query: 179 RDTQTHKIYYAQS-----GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
                                    + +IL +G  +  +    D +  +F++Y L+  S 
Sbjct: 193 GKNGEGLTIITAETGTQLVDAQTGSRFLILKNGGRYAGNAGQLDYNTTEFEAYGLKIVSG 252

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            S T  L+    +   L+                 R+  H R +      +  L+++   
Sbjct: 253 KSGTKELEEG-LSTGQLM----------KSNDPQQRALLHWRFSLPFIVPVVTLLAVRL- 300

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLF-LFCISSIF 350
               +  ++ +   +  ++ +              +   + P +I + ++  LF    ++
Sbjct: 301 --SRVNPRQGRFFHLLPAMLVYITYLGLLIVARDALADGKVPEWIGMFWVHGLFLALGLW 358

Query: 351 L-----LMIKKKYTK 360
           L      + K++  +
Sbjct: 359 LQFGPAWLRKRRLQR 373


>gi|147674275|ref|YP_001217997.1| hypothetical protein VC0395_A2081 [Vibrio cholerae O395]
 gi|153215714|ref|ZP_01950095.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153831207|ref|ZP_01983874.1| putative membrane protein [Vibrio cholerae 623-39]
 gi|229513426|ref|ZP_04402890.1| hypothetical protein VCB_001071 [Vibrio cholerae TMA 21]
 gi|229524482|ref|ZP_04413887.1| hypothetical protein VCA_002077 [Vibrio cholerae bv. albensis
           VL426]
 gi|254291417|ref|ZP_04962209.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|297581346|ref|ZP_06943269.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|124114632|gb|EAY33452.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|146316158|gb|ABQ20697.1| putative membrane protein [Vibrio cholerae O395]
 gi|148873314|gb|EDL71449.1| putative membrane protein [Vibrio cholerae 623-39]
 gi|150422607|gb|EDN14562.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|227014389|gb|ACP10599.1| putative Inner membrane protein [Vibrio cholerae O395]
 gi|229338063|gb|EEO03080.1| hypothetical protein VCA_002077 [Vibrio cholerae bv. albensis
           VL426]
 gi|229349303|gb|EEO14259.1| hypothetical protein VCB_001071 [Vibrio cholerae TMA 21]
 gi|297534184|gb|EFH73022.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 356

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 121/355 (34%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +       +           +  D + +I I+K                + 
Sbjct: 123 APQAQ-KMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVENEQLYGLNLWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   + +++      + + ++ +       + I      +    +         + + +K
Sbjct: 182 KLSTVIFSEQVDYVANNEWLMKDAVLTRLVNDIEISKESLPEYRWRTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +L+ L +   +      +    Y     +++TQ +   +  L+++           
Sbjct: 242 PEELSLTGL-SDYVHYLKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   +  +   P     L   L  ++    L+ +K
Sbjct: 301 MGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 355


>gi|120553894|ref|YP_958245.1| permease YjgP/YjgQ family protein [Marinobacter aquaeolei VT8]
 gi|120323743|gb|ABM18058.1| permease YjgP/YjgQ family protein [Marinobacter aquaeolei VT8]
          Length = 367

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 144/375 (38%), Gaps = 29/375 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y++R I  S L     ++ +    + ++ +   +    +  +L  I GY  P  
Sbjct: 1   MSIIFRYLIRQIMVSMLAVSGILLLVFMSGRFIKYLADAAEGEIAAGVLFAIMGYRFPGF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +        M   +E+ ++   G S   L+   L  A+ + + + +    
Sbjct: 61  LELILPLGLFIGILLAYGRMYLESEMTVLFACGVSEKQLLAKTLLGALPVMLVVGVMSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL--DDDLYIKISKYNPNNTLQGIFIVDS 178
           I P     ++ +  + + A  F  L    F      D +    +  +    LQG+FI + 
Sbjct: 121 ISPWGMKQVEHIFNEQRKATEFEMLAPGRFQDFTSGDRVTYTEALSDDKRQLQGVFIAEY 180

Query: 179 RDTQTHKI-YYAQSGSIDLDR----QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
                      A+SGS  +D     + ++L DG   + +P   D ++ +F++Y L+  S 
Sbjct: 181 DKDGKGVTLITAESGSQFIDEETGSRFLVLEDGGRFQGAPGRLDYNVTEFEAYGLKIVSG 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
              +   K  ++ LS L   N +NP          R+  H R++  L   I  L+++   
Sbjct: 241 QEGS---KELEEGLSTLALWNSDNPED--------RALLHWRISLPLIVPIVTLLAVRL- 288

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE--QNPYYIPILYLF-LFCISSIF 350
               +  ++ +   +  ++ +              +   + P ++ +L++  LF    ++
Sbjct: 289 --SRVNPRQGRFFHLLPAMLVYITYLGLLIVARDALADEKVPEWVGMLWVHALFLALGLW 346

Query: 351 L-----LMIKKKYTK 360
           L      + +++  +
Sbjct: 347 LQFGPGWLNRRRLER 361


>gi|68250306|ref|YP_249418.1| permease [Haemophilus influenzae 86-028NP]
 gi|145633638|ref|ZP_01789365.1| predicted permease [Haemophilus influenzae 3655]
 gi|148825754|ref|YP_001290507.1| leucyl aminopeptidase [Haemophilus influenzae PittEE]
 gi|229847324|ref|ZP_04467426.1| leucyl aminopeptidase [Haemophilus influenzae 7P49H1]
 gi|68058505|gb|AAX88758.1| predicted permease [Haemophilus influenzae 86-028NP]
 gi|144985515|gb|EDJ92331.1| predicted permease [Haemophilus influenzae 3655]
 gi|148715914|gb|ABQ98124.1| leucyl aminopeptidase [Haemophilus influenzae PittEE]
 gi|229809749|gb|EEP45473.1| leucyl aminopeptidase [Haemophilus influenzae 7P49H1]
          Length = 358

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 117/356 (32%), Gaps = 1/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  IP  +
Sbjct: 3   NTLDRYIGKSILGTIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTIPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I     
Sbjct: 63  ETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     + + AKA    +   ++  ++ +            +             +  
Sbjct: 123 IPQTEQFARDMRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFDQQH 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              K+ +A   S   D     L               +    +++           + L+
Sbjct: 183 NLIKLKHANQASYSEDEAKWTLRQVNHSTIMKDEIITTNHLSETWETSLTPDKLGAVSLR 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++S L +   +      + +  +   F +++ Q +   +  L+++           
Sbjct: 243 PTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRSVT 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                   I +   F V          +   P     L   L  I  I+ L+ +K+
Sbjct: 302 AGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKR 357


>gi|293390145|ref|ZP_06634479.1| conserved permease [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950679|gb|EFE00798.1| conserved permease [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 355

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 118/357 (33%), Gaps = 3/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + E YI + I  +   + L +V ++ +I+ +++   V   T  +   +  +   +P  
Sbjct: 1   MNTLERYIGKSILGTIFATLLMLVGLSAIIKFVEQFRSVGKGTYDILQAIAYTVLTMPKD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ ++G SR+ +   V+   + L +   +    
Sbjct: 61  VETFFPMAALLGALIALGNLASRSELVVMQSSGFSRMRIGFAVMKTTLPLVLLTMVIGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+      +      ++       +N  +  D + ++ + +   +  L  I+I     
Sbjct: 121 GIPQT-EQFARDMRSKAISGGSMLSVKNGIWAKDGNNFVYVRRITDDVELNDIYIYTFN- 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q        +     +     L   +  R  P +   +    + +             L
Sbjct: 179 EQRQLEKLKHANRATFNSGKWTLQQAKESRIQPENIQTTNRLNEEWQTNLTPDKLGVASL 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    ++S L N          +  + +   + ++L Q +   +  ++++          
Sbjct: 239 RPTSLSISGLSN-YITFLRETGQDSKNFELTYWRKLFQPISVGVMMMLALSFIFGPLRSV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I I     F V          +      I  L   +  +   + L+ +++
Sbjct: 298 TAGARILIGICFGFLFYVVNELFGKFSLVYNTTPLIGALMPSVLFLIITWWLLARRR 354


>gi|262166530|ref|ZP_06034267.1| putative membrane protein [Vibrio mimicus VM223]
 gi|262026246|gb|EEY44914.1| putative membrane protein [Vibrio mimicus VM223]
          Length = 356

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 122/355 (34%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L + + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMVVVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +       +           +  D + +I I K +    +           
Sbjct: 123 APQAQ-KLARDMRAFATSGGAIMSVRTGVWARDANDFIFIGKVDNEQLIGMNLWRFDEHK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   + +A+      + + ++ +       + I      +    +         + + +K
Sbjct: 182 KLSTVIFAEQVDYVGNNEWLMKDAQLTRMVNEIEISKDTLPEYRWRTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +   +      +    Y   F +++TQ +   +  L+++           
Sbjct: 242 PEELSLSGL-SDYVHYLKASEQDSSRYELAFWRKMTQPISIAVMMLMALSFIFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   +  +   P     +   L  ++    L+ +K
Sbjct: 301 MGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGAVAPSLVFLTIALGLLGRK 355


>gi|16273590|ref|NP_439845.1| hypothetical protein HI1703 [Haemophilus influenzae Rd KW20]
 gi|260581044|ref|ZP_05848866.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|1176473|sp|P45332|LPTG_HAEIN RecName: Full=Lipopolysaccharide export system permease protein
           lptG
 gi|1574557|gb|AAC23349.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092284|gb|EEW76225.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
          Length = 358

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 116/356 (32%), Gaps = 1/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  IP  +
Sbjct: 3   NTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTIPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I     
Sbjct: 63  ETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     +   AKA    +   ++  ++ +            +             +  
Sbjct: 123 IPQTEQFARDTRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFDQQH 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              K+ +A   S   D     L               +    +++           + L+
Sbjct: 183 NLIKLKHANQASYSEDEAKWTLRQVNHSTIMKDEIITTNHLSETWETSLTPDKLGAVSLR 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++S L +   +      + +  +   F +++ Q +   +  L+++           
Sbjct: 243 PTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRSVT 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                   I +   F V          +   P     L   L  I  I+ L+ +K+
Sbjct: 302 AGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKR 357


>gi|262170558|ref|ZP_06038236.1| putative membrane protein [Vibrio mimicus MB-451]
 gi|261891634|gb|EEY37620.1| putative membrane protein [Vibrio mimicus MB-451]
          Length = 356

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 122/355 (34%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIVVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +       +           +  D + +I I K +    +           
Sbjct: 123 APQAQ-KLARDMRAFATSGGAIMSVRTGVWARDANDFIFIGKVDNEQLIGMNLWRFDEHK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   + +A+      + + ++ +       + I      +    +         + + +K
Sbjct: 182 KLSTVIFAEQVDYVGNNEWLMKDAQLTRMVNEIEISKETLPEYRWRTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +   +      +    Y   F +++TQ +   +  L+++           
Sbjct: 242 PEELSLSGL-SDYVHYLKASEQDSSRYELAFWRKMTQPISIAVMMLMALSFIFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   +  +   P     +   L  ++    L+ +K
Sbjct: 301 MGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGAVAPSLVFLTIALGLLGRK 355


>gi|90411865|ref|ZP_01219873.1| putative permease [Photobacterium profundum 3TCK]
 gi|90327123|gb|EAS43495.1| putative permease [Photobacterium profundum 3TCK]
          Length = 356

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 124/355 (34%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  ++   +V ++ +I+ ++++  +   T  L   L      IP  +
Sbjct: 3   KILDWYIGRTIIATTALTLSTLVGLSAIIKYVEQLRKIGDGTYDLWKALIYVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + + +     
Sbjct: 63  EMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMVLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +    +       +       ++  +  D + +I I + +  +TL  + I    D 
Sbjct: 123 APQAQ-KSARELRAIWTSGGNMLSVQSGVWAKDGNDFIYIGRVHEQSTLNAVNIWQFDDE 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
            T         +   D Q  +L D  V   S I +  +      +         + + +K
Sbjct: 182 DTLSKMVFAKSASFTDEQGWLLADVTVTNISKIQQTNTKFDTLPWKTSLSPDKLAIVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             +  LS + +   +      +    Y   F ++L Q +   +  L+++           
Sbjct: 242 PEELALSGVYD-YVSYLKESKQDASRYELAFWRKLLQPISIAVMMLLALSFVFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +       +  + +    I  L   L  +     L+ +K
Sbjct: 301 MGARVLSGVIFGFTFYISNEVFGPMSLVYRLHPAIGALGPSLVFLLITIYLLRRK 355


>gi|88810479|ref|ZP_01125736.1| putative permease [Nitrococcus mobilis Nb-231]
 gi|88792109|gb|EAR23219.1| putative permease [Nitrococcus mobilis Nb-231]
          Length = 358

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 122/360 (33%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI R +    L+  L IV +  +   L+          ++ + L       P  
Sbjct: 1   MKLIDRYIARNVTAGTLIVLLVIVSLDLLFNFLKESQDSGQGDYTVWLALLYVLLTTPYS 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                PF   + +   L  +   +EL+++  TG S +T+ +P++   + L++        
Sbjct: 61  AYQAFPFATLIGSLIGLGGLAARSELVVMRGTGMSALTIARPLVMAGLSLALLAMGVGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+      +L  +A      +   E+ F+  D D Y+   +    + L+ + I   + 
Sbjct: 121 LAPRTDRLATELQTRAVGGQLSAG-GESGFWARDGDRYVHARQVPEADVLEDLQIYAFQG 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   I  A           ++L     H  +  S  +S      Y  + +      +V+
Sbjct: 180 VRLDHITTAWRAHY-EQGVWMLLAPVTTHFAADGSVRVSRAASARYRSELKPDMLDVVVV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +     ++ L                 YR  F  ++   L  V   L+++          
Sbjct: 239 EPEVLPITQL-WIYTRYLERNGLDSSRYRLAFWVKVATPLATVTMLLLTVPLVFGSLRSA 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL-YLFLFCISSIFLLMIKKKYT 359
              +   I + + I+F +          +   P  +  L    LF   ++  L+   + +
Sbjct: 298 NMGQRIFIGVLIGIAFFLLNRLLNRAAMVFGLPPLVSALGPTVLFLGIALGSLVRLSRRS 357


>gi|292493020|ref|YP_003528459.1| permease YjgP/YjgQ family protein [Nitrosococcus halophilus Nc4]
 gi|291581615|gb|ADE16072.1| permease YjgP/YjgQ family protein [Nitrosococcus halophilus Nc4]
          Length = 354

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 120/353 (33%), Gaps = 4/353 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+ + +  + L+  L ++ +   ++ +  +  V      +   L+ + Y IP  
Sbjct: 1   MKILDRYVAKAVISNTLLVLLVLIALYTFVEFITELEEVGEGNYGVMDALRYTAYSIPQY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + +   L S+   +EL+ +   G S   + +  L   ++  +   +   +
Sbjct: 61  IYDLLPVAALLGSVLGLGSLAGQSELVAMRAAGFSVGRITRSALATGMIFVVVTILMGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +     L + A+         E  F+  +++ + +I +  PN   Q I I +  +
Sbjct: 121 LAPPAKQAANTLRSLAKTGHLSEQ-AERGFWTRNNNNFNRIGRVLPNGQYQDIEIFEFDE 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               ++    +G+         L+D      S        +    +           +++
Sbjct: 180 QHRLRVISRAAGATYHRDGWH-LSDITQRIISSQGITTRRLPEALWESSLSPEMLDVVMV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L     +      +  E Y+  F  ++      +I   ++I          
Sbjct: 239 DPQQLSAWGLYR-YIDYLEENKQATEQYQQAFWSKVFAPFNTLIMMFLAIPFIFGPLRSV 297

Query: 301 QRKKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
              +   +   + I F +F   F+ +    E + +        LF    + +L
Sbjct: 298 SMGQRILVGALVGIGFFLFNRLFNQLGLVFEFSSWLAAAFPSLLFFGLGMVML 350


>gi|26987718|ref|NP_743143.1| permease YjgP/YjgQ family protein [Pseudomonas putida KT2440]
 gi|24982406|gb|AAN66607.1|AE016288_6 conserved hypothetical protein [Pseudomonas putida KT2440]
 gi|313497348|gb|ADR58714.1| Permease YjgP/YjgQ family protein [Pseudomonas putida BIRD-1]
          Length = 371

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 46/353 (13%), Positives = 119/353 (33%), Gaps = 26/353 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   +       +L  I G+ +P  L 
Sbjct: 2   IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLFLIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A L+++ +      + 
Sbjct: 62  LILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMAPAALVALLVAWLSLSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P   + ++Q+ ++      F  L    F   R    +       +    L G+FI + R 
Sbjct: 122 PLGVAQVQQIISQQDALTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRINLGGVFISEKRF 181

Query: 181 TQTHKIYYAQSGSIDLDRQAII---------LNDGEVHRKSPISKDISIMKFKSYTLQTE 231
            Q      A S  +       I         L +G  +  +P   D   +K+ +Y +   
Sbjct: 182 NQDKTKDRAPSVLVAEKGHQEIQADGNRYLVLENGYRYDGNPGQADYRAIKYDTYGVLLP 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               +  V +      S L+           +     R+E   RL+  +   +  L+++ 
Sbjct: 242 KPEVAEEVTEREALPTSELI----------GKEGLRERAELQWRLSLPILVFVVTLLAVP 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLF 342
                 +  ++ +   +  ++ +          +   +   + P  + + ++ 
Sbjct: 292 L---SRVNPRQGRFLKLLPAILLYMAYLTMLISVRGALEKGKLPIALGMWWVH 341


>gi|54298618|ref|YP_124987.1| hypothetical protein lpp2682 [Legionella pneumophila str. Paris]
 gi|148358636|ref|YP_001249843.1| permease [Legionella pneumophila str. Corby]
 gi|296108274|ref|YP_003619975.1| permease [Legionella pneumophila 2300/99 Alcoy]
 gi|53752403|emb|CAH13835.1| hypothetical protein lpp2682 [Legionella pneumophila str. Paris]
 gi|148280409|gb|ABQ54497.1| permease [Legionella pneumophila str. Corby]
 gi|295650176|gb|ADG26023.1| permease [Legionella pneumophila 2300/99 Alcoy]
          Length = 356

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/356 (11%), Positives = 104/356 (29%), Gaps = 3/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI + +  +  +  L +V +   I  + +I+ +  +   +          +P  +
Sbjct: 4   KILDRYIAKTVLSAIGLVTLMLVGLQIFILFVNQIDDLGRADYGIVQAGVFVLLQMPYQV 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +  ++EL+++   G S   +   VL  ++++ + +      I
Sbjct: 64  YLFFPIASLLGCLVGLGVLANHSELVVMRAAGISIGQITGAVLKASLIVILLITSLGETI 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P       +    A            ++ R  +D     S  + N              
Sbjct: 124 VPVMAHYANEYKVSALTGGQALLTPRGVWVRNGNDFVSIASVTHENTLRYVNQFRFDNQH 183

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                          +  + I  D +    +             + +  +          
Sbjct: 184 NLKLARQISEVKYVNN--SWIAYDVKQTEFAEDHTKAYHFDTLPWDVPVKPEILKITGTN 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            ++  L  L N          + +  Y+  F +R+TQ L  ++  +++I           
Sbjct: 242 PDEMTLHEL-NRYLREQQRNHQNVSNYKFAFFQRITQPLNTMVMMILAIPFIFGPLRSST 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 +   +   F +   F   +  + Q P  +      L        LM + +
Sbjct: 301 MGSKLLVGAMVGFGFHILNRFFGPVSTVFQWPPELAAFSPTLIFSLIGIYLMRRVR 356


>gi|325198681|gb|ADY94137.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis G2136]
          Length = 356

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 120/360 (33%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +   +   +  + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGNTD--IWLKEKNSIINVREMLPDHTLLGIKIWARND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++     +  L +           ++SI   +++ +  +      +++
Sbjct: 179 KNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L      +     +    Y   + ++L       +  L++     +     
Sbjct: 239 KPDQMSVGELT-TYIRHLQNNSQNTRIYAIAWWRKLVYPAAAWVMALVAFAFTPQTTRHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F +   F     ++   P ++    L     + + + +I+K+  +
Sbjct: 298 NMGLKLFGGICLGLLFHLAGRFFGFTSQLYGIPPFLAG-ALPTIAFALLAVWLIRKQEKR 356


>gi|116747639|ref|YP_844326.1| permease YjgP/YjgQ family protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116696703|gb|ABK15891.1| permease YjgP/YjgQ family protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 423

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 137/371 (36%), Gaps = 22/371 (5%)

Query: 1   MK-SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           MK +   Y+++       +  + +  +    ++ Q + ++ +S+ +L  L+ +    +P 
Sbjct: 33  MKMTLYRYLIKEQMVPLGVCLMGVSLVLITGRLFQLLKVLFTSSFTLGDLMALVALAMPK 92

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++    P    +        +N + EL+ +   G         V+ L + +++  F++  
Sbjct: 93  LMLFALPMASLLGVLLAFVRLNSDNELIALRAAGIGFHQFFPAVVSLLLGVTLISFVNMI 152

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDS 178
            + P      +        +     ++E  F      L       NP   +++GIF+ D 
Sbjct: 153 FVIPPTGKAFEVKLRSMARSGLPVLMKEGTFITAIPKLTFFFQSVNPTELSVRGIFVQDR 212

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILN----DGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           R+ +      A+S  I   R +  L     +G + R +   K+   + FK+Y L      
Sbjct: 213 REEKVRLAIVAESARIVYQRDSNHLTFKIANGSITRVADDMKNAQAVSFKAYDLSLSLDE 272

Query: 235 S----STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                    +   +  L  L                 +  EFH+RL      +   L+ +
Sbjct: 273 LIGSARGSKMNKREMTLRELYRVIVEKTGDVG-----HALEFHQRLAFPSGCL---LLGL 324

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCIS 347
           + A   A+ RQR +I  I I L + F  ++        + +N    P L  +   L CI+
Sbjct: 325 IGAPLGAVFRQRGRIAGITIGLVV-FLAYYVILSAGKGLGENHLVHPFLACWAPNLLCIA 383

Query: 348 SIFLLMIKKKY 358
           + F L  K + 
Sbjct: 384 ASFYLWRKMRL 394


>gi|258593793|emb|CBE70134.1| putative Permease YjgP/YjgQ family protein precursor [NC10
           bacterium 'Dutch sediment']
          Length = 356

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/363 (11%), Positives = 122/363 (33%), Gaps = 20/363 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R I +  ++ C  ++ +      ++ +N V+        +L +        
Sbjct: 3   MLLLDRYLTREIAKPLVIFCGGLLLLFANFTAVRYLNRVADGIMPFQSVLPLVLVRAAVA 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     L  +  ++E+  + ++G S   +++ V   +++++  +      
Sbjct: 63  LELLLPIALHLSVVVTLGRLYTDSEMTALFSSGVSPSRIMRIVCVGSLIVAGIVAFLSIY 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P       +L  +A   +  + ++   F+       +   +   ++       + SR 
Sbjct: 123 VRPWANENRYRLEREAAADVDLNDMQPGHFYENSSGTVLFFQRRAQSSGRMREVFIQSRS 182

Query: 181 TQTHKIYYAQSGSIDL-----DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
               ++ +A              + ++ +  +++  S     +         L+ E A +
Sbjct: 183 EDRIRLIWADEAHYPEAVEAGAGRTLVCSGAQIYELSRDRGAVRQATSDELVLEWEKART 242

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            +   K        L                   +EF  RL+  +  ++ GL+       
Sbjct: 243 LSEEYKRKAAPTWQL----------ARSASPKDIAEFQWRLSTPVAALLMGLLGFPL--- 289

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLM 353
                ++ K   +F+S+      +       H +E+        I ++ L     +  L+
Sbjct: 290 SRARARQGKYAKLFVSVVSYATFYNLNMMARHWVEKGVVSTVPGIWWVHLLLAILVASLL 349

Query: 354 IKK 356
            ++
Sbjct: 350 WRR 352


>gi|86141356|ref|ZP_01059902.1| putative membrane protein [Leeuwenhoekiella blandensis MED217]
 gi|85831915|gb|EAQ50370.1| putative membrane protein [Leeuwenhoekiella blandensis MED217]
          Length = 358

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 135/361 (37%), Gaps = 7/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F+   L  + I   + + ++I+ + ++      +           
Sbjct: 1   MKILDWYILKRYLGTFITMLLLFIPIGITVNLAEKIDKMLANEVPFVEIALYYLDFTIYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++   ++G S    ++P L  A ++ +  +I    
Sbjct: 61  ANLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGVSFYRFLRPYLIGATIVCVGAYILGTY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P       + + +       +    N++ +++D+ YI +S++ P++ +   F ++  +
Sbjct: 121 LAPAASQGFNEFTYEYLKNGKAARETRNVYRQINDNDYIYVSRFTPSSKMGQNFTLEHFE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTIV 239
             T +        +      +   +G   R      DI I + K       +  + + + 
Sbjct: 181 NNTLQYKIQARSIVYRPEDTLYRLNGYKKRIVGKEGDILISEPKLDTLFSFDLEDLTPLE 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             A       L              +  Y    +KR +  +   I  +I++      ++ 
Sbjct: 241 YIAETLTTPRLREFIDKERARGSSAINRYEVVLYKRYSLPVSAYILTIIAVAV---SSMK 297

Query: 300 RQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R+      + + +S++F   +    F  I  + + +P     L   LF I +I+LL   K
Sbjct: 298 RRGGMGINLALGISLAFIFIFFDKVFGTISEQSDFSPMVAVWLPNVLFGILAIYLLNRAK 357

Query: 357 K 357
           +
Sbjct: 358 R 358


>gi|325132744|gb|EGC55427.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M6190]
 gi|325138629|gb|EGC61188.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           ES14902]
          Length = 356

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 119/360 (33%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +       +  + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGN--TGIWLKEKNSIINVREMLPDHTLLGIKIWARND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++     +  L +           ++SI   +++ +  +      +++
Sbjct: 179 KNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L      +     +    Y   + ++L       +  L++     +     
Sbjct: 239 KPDQMSVGELT-TYIRHLQNNSQNTRIYAIAWWRKLVYPAAAWVMALVAFAFTPQTTRHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F +   F     ++   P ++    L     + + + +I+K+  +
Sbjct: 298 NMGLKLFGGICLGLLFHLTGRFFGFTSQLYGIPPFLAG-ALPTIAFALLAVWLIRKQEKR 356


>gi|77919519|ref|YP_357334.1| hypothetical protein Pcar_1923 [Pelobacter carbinolicus DSM 2380]
 gi|77545602|gb|ABA89164.1| conserved hypothetical membrane protein [Pelobacter carbinolicus
           DSM 2380]
          Length = 362

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 115/358 (32%), Gaps = 10/358 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            +  YIL    R F ++      +  +++  +RI+       S+ + +       P ++ 
Sbjct: 4   LYSRYILATFFRLFGLAIGAFAGLYLLVEFFERIDDFIEYHASVTLCVAYFLNKTPLIIT 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P    M     L    R+ EL+ +   G S   +  P+L + +L S+ +  +  +I 
Sbjct: 64  QVAPLACLMAVFMTLGGFTRSGELVAMHAGGISLAKIAAPMLRMGLLFSLIILAANEVIV 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      + +           + +++  +   +   + I +  P         + S D  
Sbjct: 124 PPSIQRARHILTTEVRGGPAVHYKQDKIWLRHNRSILNIRQIEPVQQTLKGITLLSFDKN 183

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI---SIMKFKSYTLQTESANSSTIV 239
                   +GS           D    R    S ++     +  K   L     +     
Sbjct: 184 FRIQQRFDAGSAVYSGGRWYCQDAVTRRFDTTSGNLLTEQRLAEKIEDLPVVPEDFKVPG 243

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            K N+       +               ++ + H R+      ++   + I  A      
Sbjct: 244 SKRNEDLPISEFHRLGKKLKREGYNPTRFQVDMHARIAAPFGCLMMTFLGIPFAI--RKG 301

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLM 353
           R       I IS++I   +++  +  +     +  + PI+  +    LF +   +L +
Sbjct: 302 RGASMALGIAISVAIG-ALYFILNATLLAFGYSGTFPPIIAAWSANILFLLFGTWLFL 358


>gi|260582801|ref|ZP_05850587.1| permease [Haemophilus influenzae NT127]
 gi|260094127|gb|EEW78029.1| permease [Haemophilus influenzae NT127]
          Length = 358

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 117/356 (32%), Gaps = 1/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  IP  +
Sbjct: 3   NTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTIPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I     
Sbjct: 63  ETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     + + AKA    +   ++  ++ +            +             +  
Sbjct: 123 IPQTEQFARDMRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKLDDIYIYTFDQQH 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              K+ +A   S   D     L               +    +++           + L+
Sbjct: 183 NLIKLKHANQASYSEDEAKWTLRQVNHSTIMKDEIITTNHLSETWETSLTPDKLGAVSLR 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++S L +   +      + +  +   F +++ Q +   +  L+++           
Sbjct: 243 PTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRSVT 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                   I +   F V          +   P     L   L  I  I+ L+ +K+
Sbjct: 302 AGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRKR 357


>gi|54295468|ref|YP_127883.1| hypothetical protein lpl2554 [Legionella pneumophila str. Lens]
 gi|53755300|emb|CAH16794.1| hypothetical protein lpl2554 [Legionella pneumophila str. Lens]
 gi|307611506|emb|CBX01180.1| hypothetical protein LPW_28791 [Legionella pneumophila 130b]
          Length = 356

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 41/356 (11%), Positives = 103/356 (28%), Gaps = 3/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI + +  +  +  L +V +   I  + +I+ +  +   +          +P  +
Sbjct: 4   KILDRYIAKTVLSAIGLVTLMLVGLQIFILFVNQIDDLGRADYGIVQAGVFVLLQMPYQV 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +  ++EL+++   G S   +   VL  ++++ + +      +
Sbjct: 64  YLFFPIASLLGCLVGLGVLANHSELVVMRAAGISIGQITGAVLKASLIVILLITSLGETV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P       +    A            ++ R  +D     S    N              
Sbjct: 124 VPVMAHYANEYKVSALTGGQALLTPRGVWVRNGNDFVSIASVTRENTLRYVNQFRFDNQH 183

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                          +  + I  D +    +             + +  +          
Sbjct: 184 NLKLARQISEIKYVNN--SWIAYDVKQTEFAEDHTKAYHFDTLPWDVPVKPEILKITGTN 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            ++  L  L N          + +  Y+  F +R+TQ L  ++  +++I           
Sbjct: 242 PDEMTLHEL-NRYLREQQRNHQNVANYKFAFFQRITQPLNTMVMMILAIPFIFGPLRSST 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 +   +   F +   F   +  + Q P  +      L        LM + +
Sbjct: 301 MGSKLLVGAMVGFGFHILNRFFGPVSTVFQWPPELAAFSPTLIFSLIGIYLMRRVR 356


>gi|121635228|ref|YP_975473.1| hypothetical protein NMC1491 [Neisseria meningitidis FAM18]
 gi|120866934|emb|CAM10694.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis FAM18]
 gi|261392197|emb|CAX49711.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis 8013]
 gi|325142744|gb|EGC65119.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           961-5945]
          Length = 356

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 119/360 (33%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +       +  + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGN--TGIWLKEKNSIINVREMLPDHTLLGIKIWARND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++     +  L +           ++SI   +++ +  +      +++
Sbjct: 179 KNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L      +     +    Y   + ++L       +  L++     +     
Sbjct: 239 KPDQMSVGELT-TYIRHLQNNSQNTRIYAIAWWRKLVYPAAAWVMALVAFAFTPQTTRHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F +   F     ++   P ++    L     + + + +I+K+  +
Sbjct: 298 NMGLKLFGGICLGLLFHLAGRFFGFTSQLYGIPPFLAG-ALPTIAFALLAVWLIRKQEKR 356


>gi|258625834|ref|ZP_05720713.1| Predicted permease [Vibrio mimicus VM603]
 gi|258582072|gb|EEW06942.1| Predicted permease [Vibrio mimicus VM603]
          Length = 356

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 122/355 (34%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIVVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +       +           +  D + +I I K +    +           
Sbjct: 123 APQAQ-KLARDMRAFATSGGAIMSVRTGVWARDANDFIFIGKVDNEQLIGMNLWRFDEHK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   + +A+      + + ++ +       + I      +    +         + + +K
Sbjct: 182 KLSTVIFAEQVYYVGNNEWLMKDAQLTRMVNEIEISKETLPEYRWRTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +   +      +    Y   F +++TQ +   +  L+++           
Sbjct: 242 PEELSLSGL-SDYVHYLKASEQDSSRYELAFWRKMTQPISIAVMMLMALSFIFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   +  +   P     +   L  ++    L+ +K
Sbjct: 301 MGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGAVAPSLVFLTIALGLLGRK 355


>gi|330962174|gb|EGH62434.1| hypothetical protein PMA4326_26817 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 353

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 109/355 (30%), Gaps = 4/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +  +   +  +  + S T +L   L       P  
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDI-SDTYTLPDALSYVMMTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L S+  ++EL I+   G S   ++  V+   +LL I   +    
Sbjct: 60  VYDTLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMIAGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ        +  L+ R  ++     +       L          
Sbjct: 120 VAPYAENKAQAARSLAQGLGDAQSAKHGLWHRQGEEFIHINTVQPNGLMLGVTRYRFDDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+      D     L D      +    ++     + + +       ST+++
Sbjct: 180 RHMLTSSFAKEAHFKTD--YWELKDVTTTHFNDGRTEVINTPDERWDVSLSPQLLSTVIM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                ++S L     +    +      Y   F  ++ Q    V   L++I          
Sbjct: 238 PPESLSISGL-WSYAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +     + +  +F +          +   P  + +L     C  +  LL+ +
Sbjct: 297 TLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLLPAGVCALAGVLLLRR 351


>gi|261867782|ref|YP_003255704.1| permease [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413114|gb|ACX82485.1| conserved permease [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 355

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 117/357 (32%), Gaps = 3/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + E YI + I  +   + L +V ++ +I+ +++   V   T  +   +  +   +P  
Sbjct: 1   MNTLERYIGKSILGTIFATLLMLVGLSAIIKFVEQFRSVGKGTYDILQAIAYTVLTMPKD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ ++G SR+ +   V+   + L +   +    
Sbjct: 61  VETFFPMAALLGALIALGNLASRSELVVMQSSGFSRMRIGFAVMKTTLPLVLLTMVIGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+      +      ++       +N  +  D + ++ + +   +  L  I+I     
Sbjct: 121 GIPQT-EQFARDMRSKAISGGSMLSVKNGIWAKDGNNFVYVRRITDDVELNDIYIYTFN- 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q        +     +     L      R  P +   +    + +             L
Sbjct: 179 EQRQLEKLKHANRATFNSGKWTLQQVNESRIQPENIQTTNRLNEEWQTNLTPDKLGVASL 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    ++S L N          +  + +   + ++L Q +   +  ++++          
Sbjct: 239 RPTSLSISGLSN-YITFLRETGQDSKNFELTYWRKLFQPISVGVMMMLALSFIFGPLRSV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I I     F V          +      I  L   +  +   + L+ +++
Sbjct: 298 TAGARILIGICFGFLFYVVNELFGKFSLVYNTTPLIGALMPSVLFLIITWWLLARRR 354


>gi|15677421|ref|NP_274577.1| hypothetical protein NMB1571 [Neisseria meningitidis MC58]
 gi|304387020|ref|ZP_07369275.1| YjgP/YjgQ family permease [Neisseria meningitidis ATCC 13091]
 gi|7226818|gb|AAF41924.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|304338892|gb|EFM04991.1| YjgP/YjgQ family permease [Neisseria meningitidis ATCC 13091]
 gi|308389705|gb|ADO32025.1| hypothetical protein NMBB_1800 [Neisseria meningitidis alpha710]
 gi|316983819|gb|EFV62799.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|325130630|gb|EGC53373.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           OX99.30304]
 gi|325134626|gb|EGC57266.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M13399]
 gi|325140779|gb|EGC63293.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis CU385]
 gi|325199830|gb|ADY95285.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis H44/76]
 gi|325201753|gb|ADY97207.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M01-240149]
 gi|325204535|gb|ADY99988.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M01-240355]
 gi|325205694|gb|ADZ01147.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M04-240196]
 gi|325208503|gb|ADZ03955.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           NZ-05/33]
          Length = 356

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/360 (12%), Positives = 118/360 (32%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELIPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +       +  + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGN--TGLWLKEKNSIINVREMLPDHTLLGIKIWARND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++     +  L +           ++SI   +++ +  +      +++
Sbjct: 179 KNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L      +     +    Y   + ++L       +  L++     +     
Sbjct: 239 KPDQMSVGELT-TYIRHLQNNSQNTRIYAIAWWRKLVYPAAAWVMALVAFAFTPQTTRHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F +         ++   P ++    L     + + + +I+K+  +
Sbjct: 298 NMGLKLFGGICLGLLFHLAGRLFGFTSQLYGIPPFLAG-ALPTIAFALLAVWLIRKQEKR 356


>gi|218768539|ref|YP_002343051.1| hypothetical protein NMA1760 [Neisseria meningitidis Z2491]
 gi|121052547|emb|CAM08887.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis Z2491]
 gi|319410788|emb|CBY91173.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis WUE 2594]
 gi|325128630|gb|EGC51499.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis N1568]
 gi|325144869|gb|EGC67157.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M01-240013]
          Length = 356

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/360 (12%), Positives = 118/360 (32%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +       +  + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGN--TGLWLKEKNSIINVREMLPDHTLLGIKIWARND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++     +  L +           ++SI   +++ +  +      +++
Sbjct: 179 KNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L      +     +    Y   + ++L       +  L++     +     
Sbjct: 239 KPDQMSVGELT-TYIRHLQNNSQNTRIYAIAWWRKLVYPAAAWVMALVAFAFTPQTTRHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F +         ++   P ++    L     + + + +I+K+  +
Sbjct: 298 NMGLKLFGGICLGLLFHLAGRLFGFTSQLYGIPPFLAG-ALPTIAFALLAVWLIRKQEKR 356


>gi|255038424|ref|YP_003089045.1| permease YjgP/YjgQ family protein [Dyadobacter fermentans DSM
           18053]
 gi|254951180|gb|ACT95880.1| permease YjgP/YjgQ family protein [Dyadobacter fermentans DSM
           18053]
          Length = 360

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 117/352 (33%), Gaps = 1/352 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  + Y+++    +++     IV I  +I   ++++        L  I++     LIP  
Sbjct: 4   KILDRYLIKNFLITYVFVAFVIVLIICMIDYTEKVDDFLDKKAPLREIIIDYYLNLIPYW 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  ++P    + T    + +   TE++ + ++G S   +++P +  A++L I  FI    
Sbjct: 64  INYISPLMVFIATVFFTSRIAARTEIIAMLSSGISFGRMLRPYMAGAVVLGILTFIQVGW 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK                 +            D      S      T     +   + 
Sbjct: 124 VLPKANKIRNSFEKTYVKNEFYFSGHNVHITIAPDVYAYLESYNTTTQTGNKFTMETIKG 183

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           T+  + +YA        +    L + +V     + + +S       T+     +  +   
Sbjct: 184 TKLLQKFYADKIVWQPKKGKWTLQNYQVRTLDSLGERLSRGTEIDTTINLSPKDFESDYN 243

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                 L  L        +   + LE Y  E + R TQ    +I   I ++ + +++   
Sbjct: 244 LFETFTLPELNAYIDLLKSRGADGLEVYLIEKYTRFTQPFAILILTAIGVIVSARKSRRG 303

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
              +I   F+   I    F     +      N  +   L   +F    + L 
Sbjct: 304 VGWQIALGFMLAFIYILFFLLSKGVAEAGTINTLFAVWLPNIVFSAIGVLLY 355


>gi|85706342|ref|ZP_01037436.1| Predicted permease [Roseovarius sp. 217]
 gi|85669115|gb|EAQ23982.1| Predicted permease [Roseovarius sp. 217]
          Length = 374

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 119/331 (35%), Gaps = 5/331 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L      F    L +V I W+ + ++  + +    +   + ++ +   +P V+ +V P 
Sbjct: 1   MLSQFMVLFGFFALVLVSIVWINKAVRMFDRLIGDGQPAWVFVEFTALTLPGVIGVVLPI 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                   V+  ++  +EL ++  TG S + L +PVL   +++++ + +  + + P   S
Sbjct: 61  AAFAAAVYVVNRLSSESELTVMQATGYSPLRLARPVLVFGVIVAVMMSLLAHYLIPGSLS 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            ++    +    ++   L +  F      +   I +      L+ +F+ D RD +    Y
Sbjct: 121 QLRLRQDEVSRNISAKLLSDGEFLHPAPGITFYIREITQTGELRDVFLSDRRDPEAPVTY 180

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL--KAN 243
            +    +        +++  G           +    F  ++    S  S  +V   +  
Sbjct: 181 TSSRAYLVQEGGGTRLVMVSGLAQNIRADQNRLFTTYFDDFSYDISSLVSRDVVNLDEVA 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             N   +L               T  S+ H R+T  L  VI  L+        A  R   
Sbjct: 241 FANTLEMLRDPEAVAARTGTSYGTVMSQTHGRITAALLCVIAALVGFCTLLVGAHSRFG- 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
               + ++  +  G+    S ++  +  N  
Sbjct: 300 VWRQVLLAFGLLVGIKIVESIVVAPVLLNGA 330


>gi|325954886|ref|YP_004238546.1| permease YjgP/YjgQ family protein [Weeksella virosa DSM 16922]
 gi|323437504|gb|ADX67968.1| permease YjgP/YjgQ family protein [Weeksella virosa DSM 16922]
          Length = 365

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 128/366 (34%), Gaps = 13/366 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILL-KISGYLIPT 59
           MK  + YI++    +F    L +  IA +I   Q+++ + S+  ++   L     Y    
Sbjct: 1   MKILDKYIVKNFLGTFFFMVLILTSIAIIIDFTQKLDRIDSTGSTVTEALIHFYPYWGVW 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++    P    +      + +   TE++ + + G S   L +P + +A  L+    +  N
Sbjct: 61  IVNTFLPVAVFISVIYFTSRLTAQTEIVGMLSGGISFYRLTRPYVIVAAGLAFTAMMVNN 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLF-----FRLDDDLYIKISKYNPNNTLQGIF 174
           ++ P       +   +  L++                  ++ ++++        +     
Sbjct: 121 VVLPWANIKKNKYQYEHLLSMRARKEYYKQQVISAQISSNEYVFVESYDRIEKRSDSYFL 180

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHR-KSPISKDISIMKFKSYTLQTESA 233
                  Q  +   A S + D    + IL +    +  SP    I+ +  K   L+    
Sbjct: 181 YQKFDSVQLKEQIMASSFTWDDKDSSYILQNVFERKVLSPKKDSIAYLSSKKIKLKATPD 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                   A   N   L+    +  N     +  Y +E  +R++      I  ++++   
Sbjct: 241 EILPEGYVAETMNSFELMKFIESQKNKGSANVVVYENELQQRVSSPFSTFILTILALSL- 299

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFL 351
              +  R+      + + ++++F V+  FS I     +  Y  P +  ++       +  
Sbjct: 300 --SSKKRRGGIGVNLAVGITLAF-VYIFFSQIATTFSEQGYVTPFVAAWIPNVVFGLLTT 356

Query: 352 LMIKKK 357
            +  ++
Sbjct: 357 FLYFRR 362


>gi|161870426|ref|YP_001599598.1| hypothetical protein NMCC_1474 [Neisseria meningitidis 053442]
 gi|254805326|ref|YP_003083547.1| putative permease [Neisseria meningitidis alpha14]
 gi|161595979|gb|ABX73639.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis 053442]
 gi|254668868|emb|CBA06970.1| putative permease [Neisseria meningitidis alpha14]
          Length = 356

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/360 (12%), Positives = 118/360 (32%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +       +  + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGN--TGIWLKEKNSIINVREMLPDHTLLGIKIWARND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++     +  L +           ++SI   +++ +  +      +++
Sbjct: 179 KNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L      +     +    Y   + ++L       +  L++     +     
Sbjct: 239 KPDQMSVGELT-TYIRHLQNNSQNTRIYAIAWWRKLVYPAAAWVMALVAFAFTPQTTRHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F +         ++   P ++    L     + + + +I+K+  +
Sbjct: 298 NMGLKLFGGICLGLLFHLAGRLFGFTSQLYGIPPFLAG-ALPTIAFALLAVWLIRKQEKR 356


>gi|332290236|ref|YP_004421088.1| putative permease YjgP/YjgQ family [Gallibacterium anatis UMN179]
 gi|330433132|gb|AEC18191.1| putative permease YjgP/YjgQ family [Gallibacterium anatis UMN179]
          Length = 356

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 119/356 (33%), Gaps = 3/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + YI + I  +  +    +V ++ +I+ +++   +          +  +   IP  +
Sbjct: 3   NTLDRYIGKTILATIFVVLFLLVGLSAIIKFVEQFRAIGEGNYDTAKAIAYTLLTIPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     L S+  N+EL+++  +G SR  +   V+ +AI L I         
Sbjct: 63  ETFFPMAALLGALIGLGSLASNSELVVMQASGFSRFQIGLSVMKVAIPLIILNMALGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     +++  K+    +   ++ +++ +  +           N           ++ 
Sbjct: 123 IPQTEQFAREMRYKSLTGGSLLSVKGSVWAKDGNSFVYIQHIPKENQLNGIYIYQFDQNR 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              K+  A   +   +      N       +           K +           + L+
Sbjct: 183 NLQKMSQANRATYANNEWR--FNQISESELNGDHITNKKYLNKVWQTSITPDKLGMVSLR 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            +  +++ L +          +  +T+   + ++L Q +   +  L+++           
Sbjct: 241 PSMLSITGL-SDYIQFLKNTGQDTKTFELTYWRKLLQPISISVMMLLALSFIFGPLRSVT 299

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I I    +F V       +  +   P +I  L   +F  + I+ LM  K+
Sbjct: 300 SGVRVIIGICCGFAFYVLDQVFGPLSLVYNIPPFIGALAPSIFFAAIIWWLMAHKR 355


>gi|312142810|ref|YP_003994256.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
 gi|311903461|gb|ADQ13902.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
          Length = 366

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 113/366 (30%), Gaps = 14/366 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQI-LQRINLVSSSTESLNILLKISGYLIPT 59
           MK+ + YI + +   FL        I     +  +           +  LL++    +P 
Sbjct: 1   MKTVDKYIYKELIAPFLFGVAAFTGIFIGTDLIFEVTEYYIEWGVDVLTLLRLFFLSLPE 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + T      ++ ++E+  +   G S + ++ P L + ++ S        
Sbjct: 61  IIILTFPMAALLGTIMAYNRLSGDSEITAMRAGGISIMAIVLPALIMGLVTSGITIAITE 120

Query: 120 IIEPKCRST-----IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
            I P           +    + +    +      L  R     Y+  +K       +   
Sbjct: 121 FIVPGANYQAEQIIHQFKHGERRPDTQYDLFLTPLDSRTSRPDYMLYAKSFNAENGRMTD 180

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS--IMKFKSYTLQTES 232
           +V             ++      R      +G V+      +  S    +++S       
Sbjct: 181 VVLQSFEDGRPRSVLEAEEALWLRDGWSFFNGTVYFLDREDRSPSLEFSQYRSREDIHSP 240

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           A +  +    ++ N+  L N +      +       R EFH R +  +   IF L++   
Sbjct: 241 AQAGKLGKDIDEMNIREL-NEHIALLEQQGRAAYEERVEFHHRFSVPMASFIFALLAAPL 299

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIF 350
             K     +       F    I   +++    I   +       P L  +L    I  + 
Sbjct: 300 GIKPQ---RSAGSATGFGISIIIIFIYYVLMTIGDALGSQGTIEPWLGAWLQNIIIFLVG 356

Query: 351 LLMIKK 356
             ++ K
Sbjct: 357 SGLLYK 362


>gi|167622904|ref|YP_001673198.1| permease YjgP/YjgQ family protein [Shewanella halifaxensis HAW-EB4]
 gi|167352926|gb|ABZ75539.1| permease YjgP/YjgQ family protein [Shewanella halifaxensis HAW-EB4]
          Length = 352

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 118/357 (33%), Gaps = 5/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI R +  +  ++ L +  ++ +I+ + ++ LV   T ++        +LIP  
Sbjct: 1   MRILDFYIARTLISTSSLALLVLTGLSGIIKWVDQLRLVGRGTYTMMDAGVYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     +  +  N+EL+++ + G SR+ +    +  AI L I + +    
Sbjct: 61  IELFFPMAVLLGALIGMGMLASNSELVVMQSAGLSRLQITMSAMKTAIPLMIIVMMLTEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      K++        +       ++ +  D         + NN            
Sbjct: 121 VAPVAELRAKEIKRTNISGGSLIDSNRGIWAKDGDLFVNIGGAADINNLRDITLYEFDDT 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           T      +A S       +   L D      +     ++ +K + +         S + +
Sbjct: 181 TTLTSTIHADSAEY--KDKYWQLYDVRRTTLTDDRVVLTNLKEEKWVSSLTPEKLSVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++  LL+   +      +  E Y     ++L Q +   +  L+++         R
Sbjct: 239 KPEALSIEGLLD-YLDYLKSNNQASERYELALWRKLLQPVTVAVMMLVALSFVFGPL--R 295

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  + + +   F  +                  I       I S+  L   +K
Sbjct: 296 TVTMGARVLLGVVAGFSFYICSEIFGPLSIVYGLPAFISAGMPALIFSVGALYFIRK 352


>gi|84387840|ref|ZP_00990855.1| putative permease [Vibrio splendidus 12B01]
 gi|84377355|gb|EAP94223.1| putative permease [Vibrio splendidus 12B01]
          Length = 366

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 118/360 (32%), Gaps = 23/360 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + +  +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFISVLADASDGDIPASLILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSIYIGILLTFGRLYAESEIVVMNATGIGNKFLIQSALYLALITASVAAFNSFWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +  ++Q+  +     +   L +  F    D   +        N L+ +F+   R   
Sbjct: 122 PWSQDKVEQMYEEVAAENSVDLLPKGKFEGTPDGSSVVFIDDIDGNKLENVFVAQMRPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +               +   RQ I++ DG  H   P   D  +  F+ Y           
Sbjct: 182 SVLPSVMFSKSGDVKELSDGRQVIVMYDGTRHEGVPTRLDYMVTHFEEYEGLIGQREVEK 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       L+               + ++E   R++     +   L++++     A
Sbjct: 242 KGRDWEAIPTLELI----------GNPENSAKAELQWRISL---VLCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-----YIPILYLFLFCISSIFLL 352
           +  ++ +   I  ++ I    F   S     IE+          PI  L LF       +
Sbjct: 289 VNPRQGRFAKIGPAILIYLTYFLAISATKSSIEEGSIPAVVGMWPINALLLFVAIGANFM 348


>gi|127511874|ref|YP_001093071.1| permease YjgP/YjgQ family protein [Shewanella loihica PV-4]
 gi|126637169|gb|ABO22812.1| permease YjgP/YjgQ family protein [Shewanella loihica PV-4]
          Length = 352

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 121/355 (34%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  +LYI R +  +  +  L +  ++ +I+ + +I LV   T ++        +LIP  
Sbjct: 1   MRILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQIRLVGRGTYTMVDAGIYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++ + G SR  +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQSAGLSRFQITLSAMKTAVPLMLLVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P       +     +L+    +      +  D DL++ I +    N+L  I + +  D
Sbjct: 121 GAPVA-ERHGKELQAVKLSGGSLFKSSRGIWAKDGDLFVNIGEIEDINSLHNIVLYEFDD 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                        +       +L D    + +P    ++ +    +         S + +
Sbjct: 180 KLNLVGTIEARRGVYSKDHWRLL-DVRQTKITPEQVSLTDLTLYRWESTLTPDKLSVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++  L++          +    Y     +++ Q +   +  L+++          
Sbjct: 239 KPEALSIQGLVD-YLEYLRVNNQDSGRYELALWRKIMQPITVAVMMLVALSFVFGPLRTV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  + +    SF +       +  +   P  +  +   L   S+    + +
Sbjct: 298 TMGARVLLGVVAGFSFYICNEIFGPMTLVYGLPAVLGAVMPPLIFSSAAIYYIRR 352


>gi|189345952|ref|YP_001942481.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
 gi|189340099|gb|ACD89502.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
          Length = 360

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/353 (13%), Positives = 116/353 (32%), Gaps = 7/353 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    +I R    SFL + +    +  +I +++ ++        ++ ++      +P+ 
Sbjct: 1   MKLLYRHIFRQFMTSFLFASIAFAALFTLITMVENLDEFFDRGIGISGIVWYYLLALPST 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +  P    + +      ++ ++EL  I + G     L++P +   +L+S    ++ + 
Sbjct: 61  FQITAPVAALLASILTAGRLSASSELAAIRSAGVGMSQLMRPYVLGGLLISGINLLNASF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP           +          E      ++ +  I   +      LQ   +   + 
Sbjct: 121 LEPAAAKEKISFEKQVLNETRSGLHEGTNIHVIEPENRIVTIESFDAKHLQASKVTVEQF 180

Query: 181 TQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMK-FKSYTLQTESANSST 237
             +  I    +  +  D      I+    +        +IS      +  L     +   
Sbjct: 181 NGSRLISRKDASRMVFDPAIDRWIMQKAAIRSFGADPGEISFSTGNDTLNLLLSIQSLQE 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + L+  + NL                 L+  R + H +    L  ++   I +       
Sbjct: 241 LSLQPEEMNLMQHYRYVKEKMQAGFPGLDRARVKLHAKTALPLASLVIIFIGVPL---ST 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
           + ++      I I+L I F +F G    +  +  N    P +  +L  I  + 
Sbjct: 298 VKKRSGLAAEIAIALFIGF-LFLGMQKTVASLGYNGIIEPWIAAWLPIILFLG 349


>gi|149279360|ref|ZP_01885491.1| hypothetical protein PBAL39_13617 [Pedobacter sp. BAL39]
 gi|149229886|gb|EDM35274.1| hypothetical protein PBAL39_13617 [Pedobacter sp. BAL39]
          Length = 367

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 110/362 (30%), Gaps = 6/362 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILL-KISGYLIPTV 60
           K  + YI+     +FL +    V I  +  + ++++   S+  +   ++       IP  
Sbjct: 9   KIIDWYIISKYLGTFLYTLTLFVVIIVIFDLSEKLDDFLSNNLTFWQVVSLYYAGSIPFY 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M++P    +        M   TE++ I + G S    + P    A ++      +   
Sbjct: 69  VNMLSPLINFIAVIFFTAKMADQTEIVPILSGGVSFNRFLLPYFISASIIFAANLGANLY 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +               S   +              S  N N T     + +   
Sbjct: 129 VLPYTNTLKNTFENTYVKKNDPSSKSDIHMKLDARTYIYMRSFDNKNKTGAQFSLDNFNG 188

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISI--MKFKSYTLQTESANSSTI 238
            +  +   A     D  +++  L +  +     + + ++    K K   L     + S  
Sbjct: 189 DEMTRKIVADEIKWDSLKRSWKLTNYSIRDIKGLKETMTNGAGKTKDTILDMRPDDFSAY 248

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                + +   L +           ++     E +KR    L   +  LI +      + 
Sbjct: 249 DNIFENLSNQELSDKIKKEKIRGSGIMNDLLFERYKRYLHPLSAYVLTLIGVAL---SSR 305

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +     P+ I + +SF       +      +  +   +  L    I  I    + KK 
Sbjct: 306 KVRGGVGLPLGIGILLSFTYIVFNQFAKMFSLKGEFPPLLAVLMPTIIFGILGFYLLKKA 365

Query: 359 TK 360
            K
Sbjct: 366 PK 367


>gi|221133511|ref|ZP_03559816.1| predicted permease [Glaciecola sp. HTCC2999]
          Length = 354

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/356 (10%), Positives = 120/356 (33%), Gaps = 4/356 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              ++YI R +  +  ++   +V ++ +I+ ++++  V      L +      + +P  +
Sbjct: 3   SIIDIYIARTLLSTIFVTLSTLVGLSALIKFVEQLRKVGEGDYDLIVAGLFVFFSLPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     +  +  N+EL+++  +G S+  +I+  +  A+++   + +    +
Sbjct: 63  EQFFPMATLLGGLIGMGVLASNSELIVMQASGMSKWNIIQSAMKCAVVMVCIILLVGEFL 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   +  KQ+  +A          + ++ +   D     + +N  N         + D 
Sbjct: 123 TPVSEAKAKQIRTEALSGGQVFTSNKIVWTKDGSDFVSIGNVFNQENLGDVTIYKFNDDL 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              +I  A+  +     ++  L D  +   +      + +    +         S   +K
Sbjct: 183 DLTQIIAAKRATFV--EESWALQDVHITYINDQRISTNRISLTEWRAALTPDKLSVATVK 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++  L            +    Y     +++ Q +   +  L++            
Sbjct: 241 PEALSIQGLY-EYVGYLQNNQQDSTRYELAMWRKILQPVSVCVMLLMAFSFVFGSLRSTT 299

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 +      SF +          +   P  +  + +     + + +L+++++
Sbjct: 300 MGSRIIVGTLTGFSFFIANEVFGPFAMVYNLPPMLGAI-VPSALFAGVAVLLLRRQ 354


>gi|170079022|ref|YP_001735660.1| permease, YjgP/YjgQ family protein [Synechococcus sp. PCC 7002]
 gi|169886691|gb|ACB00405.1| permease, YjgP/YjgQ family protein [Synechococcus sp. PCC 7002]
          Length = 373

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 136/357 (38%), Gaps = 13/357 (3%)

Query: 4   FELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            + YI+  +  +F         +   V  +   +  V  S    ++ LK+    +P  + 
Sbjct: 11  LDRYIIGELNLAFAFGLGLFSALGIAVGSLFDLLAQVRESRLLFDVALKVMALKMPEFIG 70

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    + T  V + ++ ++E++ + + G S   L+ P L  +IL +   F+ ++ + 
Sbjct: 71  FALPMAVLLATLIVYSRLSGDSEIIALRSLGISVYRLVLPALIFSILATAITFVFKDQVI 130

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI----KISKYNPNNTLQGIFIVDS 178
           P   +   Q   +A L     + +E + +    +  +      +       ++ + I+D 
Sbjct: 131 PLANAQATQTLEQAFLQKQAPFRDEKIIYPEYGEDNVLKRLFYAAEFDGQQMKDLTIIDR 190

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA-NSST 237
            +   ++I  A +   DL R      +G ++         ++++F  + +Q  +      
Sbjct: 191 SNGSLNQIVTADAAGWDLARNQWNFQNGIIYFIDIDGSYRNVLRFDRHQIQLSNELRVDE 250

Query: 238 IVLKANDQNLSFLLNPNP---NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            + K  D +L+ L         +P+     L   R  F ++++     +  G++      
Sbjct: 251 ELPKHEDMSLAQLQQYMQTVAADPDRDEAWLRKLRVRFQEKISFPFICLALGVVGAAIGL 310

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +        K     + + + FG ++  +++I  +    Y  PIL  +L  +  + +
Sbjct: 311 RPQSA---GKATGFGLCVGLIFGYYF-LAFMISSVGVAGYLHPILAAWLPNLIVMAI 363


>gi|308050966|ref|YP_003914532.1| permease YjgP/YjgQ family protein [Ferrimonas balearica DSM 9799]
 gi|307633156|gb|ADN77458.1| permease YjgP/YjgQ family protein [Ferrimonas balearica DSM 9799]
          Length = 372

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 134/366 (36%), Gaps = 23/366 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+L+   R+ +     +V I    Q ++ +   +       ++  +    +P +L 
Sbjct: 2   IIFRYLLKEALRAQIAVLAVLVTIFISQQFVRILADAAEGQFPGKLVATLLALNMPELLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        M  ++E+ ++   G S   + +  L LA ++++   I+   + 
Sbjct: 62  LILPLSLFLGVMMAHGRMYADSEMTVLHAVGVSEWYVTRVTLVLAFIMALISGITAIYVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI----VDS 178
           P  + T  Q+  KA+     + L +  F R  +   +   +      L  +F+       
Sbjct: 122 PWAKETEYQVLEKAESEAGLAALVQGRFQRAANGKAVIYVEGLSKGKLDTVFVAQLPEKD 181

Query: 179 RDTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                  +  A+ G I       Q + L DG         K+ ++++F  Y ++ +S  +
Sbjct: 182 DPEGETALVLAEGGRIVEGSDGSQRLQLLDGNRFSGVLNQKEYNLVQFGEYEMEIKSQEA 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +    K +  ++S L      +            +E H RL      +   L++++A   
Sbjct: 242 AHKRRKLSAYSMSQLFEEGSPHA----------WAEIHWRLAVP---IALPLLTLIAVPM 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP--ILYLFLFCISSIFLLM 353
             +  ++ K   +  ++ I  G ++G      K  +N    P   L+        I +++
Sbjct: 289 SRVNVRQGKFAKMLPAILIYLG-YFGLLMAGRKAIENGAIPPQLGLWWIHLAALVIGIVL 347

Query: 354 IKKKYT 359
           I +   
Sbjct: 348 IGRGRP 353


>gi|297171743|gb|ADI22735.1| predicted permeases [uncultured verrucomicrobium HF0500_27H16]
          Length = 412

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/363 (12%), Positives = 117/363 (32%), Gaps = 16/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + ++     +SF ++   I+ + ++  +   +  +         +L+    L P +L 
Sbjct: 49  ITDRHLASEWLKSFGITTGAILGLFYIQNLYDNLGDLLEHGAGAAEILQYYLILTPALLS 108

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P    + T     S++RN E+  + + G S  +L++  +FLA LLS+ LF+  N   
Sbjct: 109 PVLPLSVLVATLFSYGSLHRNQEITAMRSMGRSVWSLMRVNMFLAALLSVGLFLLGNGGL 168

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRL-------DDDLYIKISKYNPNNTLQGIFI 175
            K     ++   +           E    +           L++        +   G+++
Sbjct: 169 SKSAEKSREFYEELMQPPFDPASAEVATIKHLTFENASSHRLWVMNRYDPSKHKGHGVYL 228

Query: 176 VDSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ--TES 232
                +    + + +++     +    +  +G           +  + F+   ++     
Sbjct: 229 YLRYVSGKARERFTSRTAEFMPETATWVFREGRQVFFDEAGLSLRFVDFEELKMEGLESP 288

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                   K +D +L  L      +   +      Y   +H+ L      ++  L+ +  
Sbjct: 289 LTLLARQKKLSDLSLRELRELAEVSQGGQGSEARRYGVRYHQALAGPFNCMLALLVGVPF 348

Query: 293 ADKR-ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           A     +         I I +      ++        + Q     P +  +L      F 
Sbjct: 349 AIAGTRVNPMVGATKAIGIFVG-----YFLLGGASRMLGQQGILEPAVAGWLPMGLMAFY 403

Query: 352 LMI 354
            + 
Sbjct: 404 ALF 406


>gi|89891008|ref|ZP_01202516.1| putative permease, YjgP/YjgQ family [Flavobacteria bacterium BBFL7]
 gi|89516652|gb|EAS19311.1| putative permease, YjgP/YjgQ family [Flavobacteria bacterium BBFL7]
          Length = 357

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 119/361 (32%), Gaps = 6/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YILR    +FL+     + I   + I ++I  + S       ++          
Sbjct: 2   LKILDRYILRQYLGAFLLLLCLFIPIMITVHIAEKIGKILSKDIPFTEVMMYLLDFTIYF 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    + T    + +  NTE++   ++G S    ++P +  A+L+ +   +   +
Sbjct: 62  SNFLFPIFLFISTMFFTSKLANNTEIVAFLSSGVSYNRFLRPYIIGAVLVCVTALVFSTV 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   +   +   K   +              DDD     +  +   T     +     
Sbjct: 122 FVPDAAAGFNEFQFKYFKSEKERQTNNVFRRISDDDYVYVSNYNSGRKTGYDFTLEHFNG 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +     YA+   I        L+  +        + ++        L  +    +    
Sbjct: 182 NELEYKIYAE--RIAFKDSVYTLSRYKKRVLQENGEILTTKAKLDTILNFDIDELTPSSY 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            A   +   LL+      +     +  Y  E HKR +  +  +IF +I++      ++ +
Sbjct: 240 VAETLSYQKLLDFIETEESRGNGNMNVYYVEKHKRTSIPVSALIFTIIAVAV---SSVKK 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFLLMIKKKYT 359
           +      + I L I+    +         E++  + P + ++       I  L++ +   
Sbjct: 297 RGGMGVNLAIGLGIAMSYMFLDKVFGTIAEKSTSFEPWIAVWAPNIFFGIVALLLIRNAR 356

Query: 360 K 360
           +
Sbjct: 357 R 357


>gi|241760405|ref|ZP_04758500.1| permease YjgP/YjgQ [Neisseria flavescens SK114]
 gi|241319283|gb|EER55761.1| permease YjgP/YjgQ [Neisseria flavescens SK114]
          Length = 356

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/360 (11%), Positives = 120/360 (33%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +I+  +  +   + +   L +     +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGKGSYNSAKLGQYVLMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +    ++ +I        
Sbjct: 61  AYELMPLAVLIGGLISLSQLASGSELTVIKASGMSTKKLLLILSQFGLIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +       +  + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGN--TGLWLKEKNSIINVREMLPDHTLLGIKIWQRND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++     +  L +           ++S    +++ +  +      +++
Sbjct: 179 KNELTQAAEAESAVLNPDGSWQLKNIRRSILGEDKVEVSTAAEENWPISVKRNLMDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L     ++     +  + Y   + ++L   +   +  L++     +     
Sbjct: 239 KPDQMSVGELT-TYIDHLEKNNQNTQVYAIAWWRKLVYPVAAWVMALVAFAFTPQTTRHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F           ++   P ++    L     + + + +I+++  +
Sbjct: 298 NMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAG-ALPTVLFALLAVYLIRRQEKR 356


>gi|217967689|ref|YP_002353195.1| permease YjgP/YjgQ family protein [Dictyoglomus turgidum DSM 6724]
 gi|217336788|gb|ACK42581.1| permease YjgP/YjgQ family protein [Dictyoglomus turgidum DSM 6724]
          Length = 356

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 121/357 (33%), Gaps = 2/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y L+     F +  L    I  V  +   ++LV + +  L   L++    IP  
Sbjct: 1   MKIISRYFLQNFIPVFFVGLLLFTTILLVSPLFIIMDLVVARSIPLKTALELFITKIPPY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +    V+   + + E++ +  +G S    +  +L  ++   + +F     
Sbjct: 61  LTYTFPMAIFLAVVYVIGQFSEHGEIMAMKASGASIKYFLPAILMFSLSAQLIMFYVNEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK     K L  KA   +     E   F   +   + +            + I     
Sbjct: 121 VAPKAYEREKILMNKAYNNVIMPSRENVFFNENNSFYFFRKVDPKNKKFEDILLIELLEK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                I +A+    D  +    + +GEV+  +   + I   KFK Y +    A    +  
Sbjct: 181 GNVRLIIHAEKALWDEFKGWTFM-NGEVYSLNKEGEMIFQGKFKEYKVTLNRAPYQLVPS 239

Query: 241 -KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            K  ++   F +             L   ++EFH R+       IF ++++         
Sbjct: 240 SKPVEEMSIFEIVDQIRLLEGTGLNLNNLKTEFHIRIALPFTCPIFAILALGLGLNMGKG 299

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            +        IS+ + + +F     +        +    L   +F I  I+LL  K+
Sbjct: 300 GRSLSFGLSVISIFVYYIIFSIGRSLAKAGIVPYFLGAWLGNIVFLIIGIYLLNKKR 356


>gi|119773934|ref|YP_926674.1| hypothetical protein Sama_0797 [Shewanella amazonensis SB2B]
 gi|119766434|gb|ABL99004.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 352

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 119/355 (33%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI R +  +  +  L +  ++ +I+ + ++ LV   + ++        +LIP  
Sbjct: 1   MSILDWYIARVLISTSSLCLLVLTGLSGIIKWVDQLRLVGRGSYTMMDAGVYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     L  M  N+EL+++  +G SR+ +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGLGMMAANSELVVMQASGQSRLQITVSAMKTAVPLMLLVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P       +L A      +         +  D DL++ I + +  NTL  I + +   
Sbjct: 121 VAPAAEQRANELKATMISGGSLIKSH-RGIWAKDGDLFVNIGEVSDINTLGNITLYEFDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +              D +A  +        +  +     +  + +         S + +
Sbjct: 180 QERLNHVVNAR-RATFDGKAWQMQGVSKTHITEEAIVREDIDSELWQSSLTPDKLSVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++  L+    +      +    Y     ++L Q +   +  L+++          
Sbjct: 239 KPESLSIQGLM-GYLDYLRINSQDPSRYELALWRKLMQPVTVAVMMLVALSFVFGPLRSV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  + +    SF +       +  + Q P +I      L    +    + +
Sbjct: 298 TMGARVLLGVVAGFSFYICNEIFGPMTMVYQLPAFIGAGAPALLFAGAAVFYIRR 352


>gi|332707452|ref|ZP_08427501.1| putative permease [Lyngbya majuscula 3L]
 gi|332353803|gb|EGJ33294.1| putative permease [Lyngbya majuscula 3L]
          Length = 388

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 135/359 (37%), Gaps = 20/359 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + YI+  +    L        +   +  + + +  V+ +   L I L++    IP 
Sbjct: 16  LSVMDRYIVFELIPPLLFGIGAFSSLGVAIGTLFELVRKVTEAGLPLGIALQVLLLQIPQ 75

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            +    P    +      + ++ ++EL+ + + G S   L+ P + +++L++   F+   
Sbjct: 76  FISYALPMSMLLAALMAYSRLSSDSELIAMRSFGVSIYRLVIPAVVVSLLVTSLTFVFNE 135

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL------------YIKISKYNPN 167
           ++ P      K    KA      S+ E N+F+     +                ++    
Sbjct: 136 LVVPAANYQSKITLDKALKKERPSFQERNIFYPEYQKVKLPNGKKVNKIKRWFYAEQFDG 195

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             ++G+ I+D   T   +I  ++S   +         DG ++  SP +   +I++F+   
Sbjct: 196 KQMRGLTILDFSQTGLEQIVTSESAVWNPTENLWDFLDGTIYIISPDASYRNILRFQKQK 255

Query: 228 LQT--ESANSSTIVLKANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
           LQ      + +       + N++  L        +   + +   R    ++++     ++
Sbjct: 256 LQLPRTPLDLAKKNRDYGEMNIAQSLERLEVLRHSGNAKKIRKLRIRIQQKISFPFVCLV 315

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           FGL+      +     +  K     IS+ + F  ++   +I + +     + P++  +L
Sbjct: 316 FGLVGASLGTRPQ---RTGKATSFGISVLVIFS-YYLLGFITNALGLVNIFSPLMAAWL 370


>gi|261253952|ref|ZP_05946525.1| putative membrane protein [Vibrio orientalis CIP 102891]
 gi|260937343|gb|EEX93332.1| putative membrane protein [Vibrio orientalis CIP 102891]
          Length = 356

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 121/357 (33%), Gaps = 3/357 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI + I  +  +     V ++ +I+ ++++  V   T  L   L      IP  +
Sbjct: 3   KILDLYIGKTIIATTSLVLATFVGLSAIIKYVEQLRKVGQGTYDLIQALLYVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMIMVTLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +    +       +           +  D + +I I K   +            + 
Sbjct: 123 APQAQ-KAARDLRAISTSGGALLSVRTGVWARDANDFIFIGKVEDDTIYGMNMWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   + +A+      D   ++ +         I      +   S+T        + + +K
Sbjct: 182 RLESVVHAKRVDYVSDNTWMMKDVQLTEMVDEIEISKHSLPEYSWTTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +L  L +   +      +    Y   F +++TQ     +  L+++           
Sbjct: 242 PEELSLGGLYD-YVSYLKASEQDPARYELAFWRKVTQPFSIAVMMLMALSFIFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                   +    +F +   F   +  +   P     + +      +I L+++++K 
Sbjct: 301 MGARILSGVIAGFTFYISSEFFGPLSLVYNIPPVFGAV-MPSIVFLTIALMLLRRKL 356


>gi|319637673|ref|ZP_07992439.1| hypothetical protein HMPREF0604_00062 [Neisseria mucosa C102]
 gi|317400828|gb|EFV81483.1| hypothetical protein HMPREF0604_00062 [Neisseria mucosa C102]
          Length = 356

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/360 (11%), Positives = 120/360 (33%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +I+  +  +   + +   L +     +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGKGSYNGAKLGQYVLMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +    ++ +I        
Sbjct: 61  AYELMPLAVLIGGLISLSQLASGSELTVIKASGMSTKKLLLILSQFGLIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +       +  + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGN--TGLWLKEKNSIINVREMLPDHTLLGIKIWQRND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++     +  L +           ++S    +++ +  +      +++
Sbjct: 179 KNELTQAAEAESAVLNPDGSWQLKNIRRSILGEDKVEVSTAAEENWPISVKRNLMDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L     ++     +  + Y   + ++L   +   +  L++     +     
Sbjct: 239 KPDQMSVGELT-TYIDHLEKNNQNTQVYAIAWWRKLVYPVAAWVMALVAFAFTPQTTRHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F           ++   P ++    L     + + + +I+++  +
Sbjct: 298 NMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAG-ALPTVLFALLAVYLIRRQEKR 356


>gi|157960740|ref|YP_001500774.1| permease YjgP/YjgQ family protein [Shewanella pealeana ATCC 700345]
 gi|157845740|gb|ABV86239.1| permease YjgP/YjgQ family protein [Shewanella pealeana ATCC 700345]
          Length = 352

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 117/357 (32%), Gaps = 5/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  ++ L +  ++ +I+ + ++ +V   + ++        +LIP  
Sbjct: 1   MKILDLYIARILISTSSLALLVLTGLSGIIKWVDQLRVVGRGSYTMMDAGVYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     +  +  N+EL+++ ++G SR+ +    +  AI L I + +    
Sbjct: 61  IELFFPMAVLLGALIGMGMLASNSELVVMQSSGLSRLQITMSAMKTAIPLMILVMMLTEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      K++        +       ++ +            + N+         S  
Sbjct: 121 VAPVAELRAKEIKRTKVSGGSLIESNRGIWAKDGPLFVSIGGVVDSNHLRDITLYEFSDT 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           T      +A S       +   L D            +  ++   +         S + +
Sbjct: 181 TDLTSTVHADSAEYR--DKYWQLFDVRRTTLKDEQVVLVNLEQDKWISSLTPEKLSVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++  LL+   +      +  E Y     ++L Q +   +  L+++         R
Sbjct: 239 KPEALSIEGLLD-YLDYLESNNQASERYELALWRKLMQPVTVAVMMLVALSFVFGPL--R 295

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  + + +   F  +                  I       I S+  L   +K
Sbjct: 296 TVTMGARVLLGVVAGFSFYICSEIFGPLSIVYGLPAFISAGMPALIFSVGALYYIRK 352


>gi|37528300|ref|NP_931645.1| hypothetical protein plu4479 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787738|emb|CAE16851.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 359

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 116/354 (32%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I ++ LM+   +V ++ +I+ ++++  V     +           +P  + +
Sbjct: 5   LDRYIGRTILQTILMTLFMLVSLSGIIKFVEQLRKVGQGEYTTISAGLYVLLSVPKDIQI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++   +EL+++  +G +R+ +   V+  AI L I   +    + P
Sbjct: 65  FFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAGSVMKTAIPLVILTMVIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+  L  +     + ++    DD        +            + D + 
Sbjct: 125 QGEQMARNYRAQKMLGGSLVSTNKGMWTIDGDDFIYIQRIVSDTEIKGVNIYHFNDDKKL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
             + YA S   D D     L+  E    +   K     +  +      +     +V    
Sbjct: 185 LSVKYAASAVYDKDNDLWKLSQVEESDLTDSKKITGSQRISADWKILLTPEQLNVVALEP 244

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
           +      L           +    Y+    K++   L   +  L+++             
Sbjct: 245 EALSISGLYQYIKYLKQSEQESGRYQLNMWKKIFAPLSVAVMMLMALSFIFGPLRSVPMG 304

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 IS    F V       +  +   P  +  L   L  ++    L++K++
Sbjct: 305 VRIVTGISFGFLFYVLNEIFGPLSLVYSVPAVLAALLPSLLFLTVSIYLLLKRR 358


>gi|149907703|ref|ZP_01896450.1| hypothetical protein PE36_07437 [Moritella sp. PE36]
 gi|149809373|gb|EDM69302.1| hypothetical protein PE36_07437 [Moritella sp. PE36]
          Length = 355

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 125/355 (35%), Gaps = 4/355 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++YI + I  + ++    +V ++ VI+ ++++  V   T  L   L      +P  +
Sbjct: 3   KILDIYIGKAILFATMICLFTLVGLSAVIKYVEQLRAVGRGTYGLLEALMYVMLKMPREI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++  ++EL++I   G SR  ++   +  AI + I + +    +
Sbjct: 63  TIFFPMAALLGALIGLGALASSSELVVIQAAGQSRFKIVLSTMKTAIPMMIIVMLMGEYV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P       QL  +A          +   +  D + +I I K N  + L  + I +    
Sbjct: 123 APYTEQKAAQLRGEATSGQ-SIIRAQKGVWAKDKENFINIGKVNNGSELHDVTIYEFAGN 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           Q                +   L D  +      S  ++    + +           + + 
Sbjct: 182 QRLVKTTQAR-RATYTGKYWQLTDLRITHFERDSISVTEQATQRWDSTLTPEKLDVVTID 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             D ++S L +      +   +   +Y   F +++ Q L   +  L+++           
Sbjct: 241 PEDLSISGLYS-YITYLDSNKQDAGSYELAFWRKIFQPLSIGVMVLLALSFVFGPLRTVT 299

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                 + +    +F +       I  +   P ++  + +     + I ++ ++K
Sbjct: 300 MGARILMGVVAGFTFYLASETFGPISLVYSLPPFLGAV-VPSAIFTLIAIVQLRK 353


>gi|330448736|ref|ZP_08312383.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492927|dbj|GAA06880.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 357

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 118/355 (33%), Gaps = 1/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  ++   +V ++ +I+ ++++  V   +  L   L      +P  +
Sbjct: 3   KILDWYIGRTIIATSALTLSTLVGLSAIIKYVEQLRKVGQGSYDLLKALYFVLLSMPQDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++  +G S++ +    L  A+ + I + +     
Sbjct: 63  IMFFPMAVLLGALIGLGMLASSSELVVMQASGFSKLDIGLSTLKTAVPMMIIVVLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   ++  +      +    +  ++ + D+D       ++ N              
Sbjct: 123 APQAQKMAREYRSAWVYGGSVIAAQSGVWAKNDNDFIYMGRVHDLNKVDVVNIWKFDNKG 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   +  A++ S D      + +              S +    +         + + +K
Sbjct: 183 KLEDVTSAKTASYDKSTGWTMHDVTITDTAGNSKLTNSHVASMKWDTTMTPDKLAVVTVK 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             +  LS L N   +      +    Y   F ++  Q     +  L+++           
Sbjct: 243 PEELPLSGLYN-YVSYLKESKQDASRYELAFWRKALQPFSIAVMMLLALSFVFGPLRSVT 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +       +  + + P  I  L   L  +     L+ +K
Sbjct: 302 MGARVLSGVIFGFAFYISDQVFGPMILVYRLPPIIGALGPSLVFLFITIYLLRRK 356


>gi|126736391|ref|ZP_01752133.1| hypothetical protein RCCS2_01329 [Roseobacter sp. CCS2]
 gi|126714212|gb|EBA11081.1| hypothetical protein RCCS2_01329 [Roseobacter sp. CCS2]
          Length = 369

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 123/351 (35%), Gaps = 5/351 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L  +   F    L ++ I W+ + +   + + +  +S  + L+ +   +P+V+ +  P 
Sbjct: 1   MLSQLMVLFGFFSLVLILIYWINRAVVLFDQLIADGQSAGVFLEFTALSLPSVMRLALPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                   V   M+  +EL ++  TG S   L +PVL+  I++++ +    + + P   +
Sbjct: 61  AAFAAAVYVTNRMSTESELTVVQATGYSPFRLARPVLYFGIIVALMMSALMHFLVPMSAA 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            +    A+    +T   L E  F    + +   I    P   LQ IF+ D+R       Y
Sbjct: 121 RLADRQAEIAQNITARLLTEGQFLEPINGVTFYIRDITPAGELQDIFLSDTRSDAEQVTY 180

Query: 188 YAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ 245
            A    +  D   I  ++ DG V      ++ +    F  +                 D 
Sbjct: 181 TATKAFLVRDNDTIQLVMLDGMVQTLRTENQRLFTTTFDDFAYNISDLIRQPRNRGRRDA 240

Query: 246 N--LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
                 LLNP P              S  H R +Q +  ++  L+   A       R   
Sbjct: 241 YLFTWELLNPTPALEAETGRDAARLISLGHDRFSQSILGIVAALLGFSALMVGGYSRFG- 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               I  ++ +   V    +  +     +P    + YL       +   ++
Sbjct: 300 VWKQIIGAIFLIIVVKAVETTGLRIARSDPQLWMVAYLQSAVGFVMIWFLL 350


>gi|323492970|ref|ZP_08098108.1| lipopolysaccharide ABC transporter permease [Vibrio brasiliensis
           LMG 20546]
 gi|323312801|gb|EGA65927.1| lipopolysaccharide ABC transporter permease [Vibrio brasiliensis
           LMG 20546]
          Length = 356

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 120/357 (33%), Gaps = 3/357 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI + I  +  +     V ++ +I+ ++++  V   T  L   L      IP  +
Sbjct: 3   KILDLYIGKTIIATTSLVLATFVGLSAIIKYVEQLRKVGEGTYDLIQALLFVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + + +     
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLNIGMSVLKTAVPLMVLVTLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +       +           +  D + +I I K   +            + 
Sbjct: 123 APQAQ-KMARDLRAFATSGGAILSVRTGVWARDANDFIFIGKVEDDKIYAMNMWRFDEEK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   + +A +     D    + +         +      +   S+T        + + +K
Sbjct: 182 RLESVVHAATVEYVADNTWKMKDVQLTEMVDEVEISKQSLPEYSWTTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +L  L +          +    Y   F +++TQ     +  L+++           
Sbjct: 242 PEELSLGGLYD-YVTYLKASEQDPSRYELAFWRKVTQPFSIAVMMLMALSFIFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                   +    +F +   F   +  +   P     + +      +I L+++++K 
Sbjct: 301 MGARILSGVIAGFTFYISSEFFGPLSLVYNIPPVFGAV-MPSLVFLTIALMLLRRKL 356


>gi|262401790|ref|ZP_06078355.1| putative membrane protein [Vibrio sp. RC586]
 gi|262351762|gb|EEZ00893.1| putative membrane protein [Vibrio sp. RC586]
          Length = 356

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 122/355 (34%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIITLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +       +           +  D + +I I+K +              + 
Sbjct: 123 APQAQ-KLARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVDNEQLTGMNLWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   + +A+      + + ++ +       S I      +    +         + + +K
Sbjct: 182 KLSTVIFAERVDYVGNNEWLMKDAQLTRLVSDIEISKESLPEYRWRTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +   +      +    Y     +++TQ +   +  L+++           
Sbjct: 242 PEELSLSGL-SDYVHYLKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   +  +   P     +   L  ++    L+ +K
Sbjct: 301 MGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGAVAPSLVFLTIALGLLGRK 355


>gi|261211061|ref|ZP_05925350.1| putative membrane protein [Vibrio sp. RC341]
 gi|260839562|gb|EEX66173.1| putative membrane protein [Vibrio sp. RC341]
          Length = 356

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 123/355 (34%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIITLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +       +           +  D + +I I+K +    +         + 
Sbjct: 123 APQAQ-KLARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVDNEQLIGMNLWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   + +A+      + + ++ +       + I      +    +         + + +K
Sbjct: 182 KLSTVIFAEEVDYIGNNEWLMKDVHLTRMVNDIEISKEALPEYRWHTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +   +      +    Y     +++TQ +   +  L+++           
Sbjct: 242 PEELSLSGL-SDYVHYLKASEQDASRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   +  +   P     +   L  ++    L+ +K
Sbjct: 301 MGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGAIAPSLVFLTIALGLLGRK 355


>gi|258591110|emb|CBE67405.1| putative Permease YjgP/YjgQ [NC10 bacterium 'Dutch sediment']
          Length = 362

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/351 (12%), Positives = 112/351 (31%), Gaps = 10/351 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+ +   R    S +  + ++ ++ +  R++       S  ++++   Y +P  
Sbjct: 6   MRILDRYLAKEFLRICAFSLVIFLALSVIVDLFDRLSRFLD--VSGVVVIQYYIYRLPWF 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    +     L  M R+ ELL +     S   ++ P L L +++S    I    
Sbjct: 64  GFQVMPVAVLLAALFSLGKMARHNELLAMKMGHLSIFRIVVPPLVLGLVVSFAALILGES 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD--DLYIKISKYNPNNTLQGIFIVDS 178
           I P+               ++     +N         + ++ IS     +       V  
Sbjct: 124 IVPRMNERALDAYRVKVQKVSPFQRTKNNDIWYRAKGNRFLHISLLEAASGSIRGLTVFE 183

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANSST 237
                       +           L +GE+ R  P  +  +      +  L+ +  + + 
Sbjct: 184 LSPDFRLARRIDAKEARWQDGQWRLQNGEISRTKPDGTFRVDPFTHLTLYLEEKPEDLAH 243

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +V +A +   S L                 Y+ +   + +     ++   I I  A +  
Sbjct: 244 VVREAEEMTSSEL-REYIERLAKAGVSSVRYQVDLAAKGSTAFTNLVMAFIGIAFALRTG 302

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
               ++ +     +  ++   +   +     + +     P++  +L  +  
Sbjct: 303 ----KRGVMAWTGACVVAAVCYSILNSFSISLGRGDVLPPLVAAWLPNVLF 349


>gi|120599782|ref|YP_964356.1| permease YjgP/YjgQ family protein [Shewanella sp. W3-18-1]
 gi|120559875|gb|ABM25802.1| permease YjgP/YjgQ family protein [Shewanella sp. W3-18-1]
          Length = 370

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 136/371 (36%), Gaps = 25/371 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  IP ++ 
Sbjct: 2   IVFRYLIREVFKAQIAVLLVLLTIFISQHFVRILADASDGEFPASLIVTLIGLNIPALVV 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M    E++I+   G S   + +  L LA++  +F       + 
Sbjct: 62  LVLPLSLFLGILVAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVVNMLFTGYLSLYVT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-----VD 177
           P       Q+  KAQ     + L +  F    +   +   +    +              
Sbjct: 122 PWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELEKVFVAQLPEP 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQ---AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           S +T    +  A++G +  D      + LN+G  ++ SP  KD  +++F  Y +Q +   
Sbjct: 182 SDETGVTNVVVAKNGRVLEDNMGAQQLQLNNGVRYQGSPRLKDYQMIEFGGYKMQIKEQQ 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +   ++ LL                  +EFH RL   L   I  LI++  A 
Sbjct: 242 VDERRRKLSALTVTDLL----------KVESAEAVAEFHWRLAIPLAIPIMTLIAVPLA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +  ++ +  G F         +     P Y+ + ++ L  +     L
Sbjct: 291 --RVNVRQGKFAKMLPAVLLYLGYFGLMVAGRKALQDGVIPQYLGMWWIHLSALIMGIFL 348

Query: 353 MIKKK--YTKI 361
           + K +  + ++
Sbjct: 349 LGKDRPLFARL 359


>gi|254786690|ref|YP_003074119.1| permease, YjgP/YjgQ family [Teredinibacter turnerae T7901]
 gi|237683657|gb|ACR10921.1| permease, YjgP/YjgQ family [Teredinibacter turnerae T7901]
          Length = 378

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/379 (12%), Positives = 136/379 (35%), Gaps = 36/379 (9%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  S     L ++ I    + +  +   ++      +LL +  Y +P  L 
Sbjct: 2   IIFRYLAREVLSSMFAVSLVLLMIIISARFVNYLAEAAAGKLDAGVLLTLMAYRLPAYLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +  ++E+ ++   G S+  L+   L  ++++++ + +    + 
Sbjct: 62  LILPLGLFIGILMAYGRLYLDSEMTVLSACGLSQKRLVGYTLAASLVVAMLVGLFSLYLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR--- 179
           P+     + L A+ +    F  L+ + F  LD       ++    +  Q   +  ++   
Sbjct: 122 PQGVKASEALLAEQRNRTDFETLKPSRFHTLDQGAGTSYAESISEDKKQLRGVFMAKVSP 181

Query: 180 --DTQTHKIYYAQSGSI--------------DLDRQAIILNDGEVHRKSPISKDISIMKF 223
                       Q   +                 ++ ++L +G  +  +P +++  +++F
Sbjct: 182 IDPADDLDKVTHQEADLTVLTAESGETVIDPQSGQKYLLLKNGRRYVGTPGTQNYQVVEF 241

Query: 224 KSYTLQTESANSSTIVLKAND-QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
            +++      + +    +  D      LL       +          +    R +  +  
Sbjct: 242 GNFSQLLPEPDYAVKPKRFTDGLTTFKLLQAKTREAS----------AALQWRFSMPVLV 291

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYL 341
           +I GL+++          ++ +   +  ++ +        +     IE+ N     +L+L
Sbjct: 292 MIVGLLAVPL---SKTQPRQGRYAKMLPAIILYMVYLVCVNAARGLIEKGNEPVPGMLWL 348

Query: 342 --FLFCISSIFLLMIKKKY 358
              LF   ++FLL+ K++ 
Sbjct: 349 VHLLFFTVALFLLVDKRRL 367


>gi|197119770|ref|YP_002140197.1| membrane protein [Geobacter bemidjiensis Bem]
 gi|197089130|gb|ACH40401.1| membrane protein, YjgQ-related protein [Geobacter bemidjiensis Bem]
          Length = 360

 Score =  115 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 111/358 (31%), Gaps = 9/358 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI R   +   +     + I  V+  +++++  +    S   L       IP +
Sbjct: 1   MNILTRYIARAYVKMLSLCLGSFIAIYLVVDFMEKVSRFTRYGASWKHLALFFITKIPEM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    M T   L +++  +EL  I + G S   +  P+L +++L+S+ +      
Sbjct: 61  IIDAAPLAVLMATLLTLGTLSLTSELTAIRSCGVSLFRISLPILVISVLMSLGVLAIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK  +    +        + S           ++  +  +        +   I     
Sbjct: 121 VLPKTYAQRTYIQEVLIQKKSPSAFFRQQNIWFREEGTVLRASLFEPARNELKGITLWEL 180

Query: 181 T---QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                          +I   +  +  +      +          +     LQ + A+  T
Sbjct: 181 QPGTGEPLKRTEADLAILGAKGWMFRDAVVRQFRDGEVSSTQKYRELPVELQLKPADLKT 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +   ++  +L  L +               Y ++ H R++      +   + I  A +  
Sbjct: 241 LGKFSDSMSLVEL-SRYCRKLRASGYDPTRYVTQMHSRISMPFGCAVMAFLGIPFALRGG 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIFLLM 353
             R       + +S+ + F      S II  + Q     P++  +   F        +
Sbjct: 300 --RSSGIAFGVGLSIGVGFLYVIVNSVIIS-VGQVGLLPPVVAAWATNFIFFVAGAWL 354


>gi|291616052|ref|YP_003518794.1| YjgQ [Pantoea ananatis LMG 20103]
 gi|291151082|gb|ADD75666.1| YjgQ [Pantoea ananatis LMG 20103]
          Length = 378

 Score =  115 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 117/357 (32%), Gaps = 3/357 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YI + I  + LM+   +V ++ +I+ + ++        S       +   +P  +
Sbjct: 23  RVLDRYIGKTIFNTILMTLFMLVSLSGIIKFVDQLRKTGQGAYSALDAGYYTLLSVPKDI 82

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++ + +EL+++   G +R+ +   V+  AI L +        +
Sbjct: 83  EIFFPMAALLGALLGLGTLAQRSELVVMQAAGFTRMQVALSVMKTAIPLVLLTMAIGEFV 142

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     +   A+          +  L+ +  ++          +          + D 
Sbjct: 143 APQGEQMARNFRAQQLYGGALVSTQSGLWAKDGNNFIYIERVKGDDEIDGVSIYNFTDDR 202

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVL 240
           +   + YA +   + D++  +L+  +      P     S      +           + L
Sbjct: 203 RLQSVRYAATAKWNKDKKLWVLSQVDESNLTDPKQITGSQSLTGEWKTSLTPDKLGVVAL 262

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  +++ L +          +    YR     ++ Q L   +  L+++          
Sbjct: 263 DPDALSITGLYD-YSKYLKQSGQESGRYRLNMWSKIFQPLSVAVMMLMALSFIFGPLRSV 321

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    IS    F V       +  +   P     + L  F   +I L M+ K+
Sbjct: 322 SMGVRVVTGISFGFLFYVLDQIFGPLSLVYGLPPIFGAI-LPSFAFFAISLFMLIKR 377


>gi|187250533|ref|YP_001875015.1| permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
 gi|186970693|gb|ACC97678.1| Permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
          Length = 370

 Score =  115 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 117/365 (32%), Gaps = 10/365 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    YI       F  +      +  +    + I  +++   +  ++LK     +P+ L
Sbjct: 11  KILYRYIASKFWMPFFFAMAMFCILVLLGDFFENIKSITNGYATFRLILKYCFLNLPSWL 70

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M+ P    +    V++ M    E      +G     L  P++   IL+     + +  +
Sbjct: 71  GMLLPVACLLAVLFVISDMVAGGEWTACLASGYRPGQLFVPLIACVILVVFLNSLMQEFV 130

Query: 122 EPKCRST----IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
            P+         ++     +           L       L  +  +              
Sbjct: 131 YPRVSQKAEQVFRRQLRGDKDFQAGIERNITLRINPRQMLLAQTLQSGSLTMYGITTEFY 190

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           + + +  K   A++   D D +     DG +         I    F +     + A    
Sbjct: 191 NENWEIEKQIVARNLVWDKDEKIWFYKDGVIRYFEEG-ITIREEVFDTLESDLKVAPKDI 249

Query: 238 IVLKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            V    ++ +S   L    +       +    ++  H +L   +  +I  LI +  A   
Sbjct: 250 SVGDIEEKAISVRELLKKISFLGRSGLVTYKEKTNLHNKLAMPVMTIIMCLIGMPFAV-- 307

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             VR+R K+  I  +L +SF  +W    +     QN    P +  +   + +   + I+ 
Sbjct: 308 -TVRKRGKVINIIAALVMSFSFWWV-MTMASTAGQNGILSPFIAGWGIVVLAAAAVFIEF 365

Query: 357 KYTKI 361
           K  KI
Sbjct: 366 KIMKI 370


>gi|253997572|ref|YP_003049636.1| permease [Methylotenera mobilis JLW8]
 gi|253984251|gb|ACT49109.1| permease YjgP/YjgQ family protein [Methylotenera mobilis JLW8]
          Length = 356

 Score =  115 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/352 (12%), Positives = 114/352 (32%), Gaps = 5/352 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+ + I  + L+  L ++ +     ++Q +  +   +  L+ +L       P  
Sbjct: 1   MKIITRYLFKEITVNVLLITLALIAMFSFFDLIQELESLGHGSYGLSKILLFVALSAPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +     L  + R +EL+++  +G S  +L   ++ + +L ++  F+    
Sbjct: 61  VYEVMPVAVLVGCMYSLGQLARYSELIVLRVSGISLYSLAATLIKIGMLFTVITFLIG-E 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +       + Q               ++  +  D   ++ + +   + TL  I I +  D
Sbjct: 120 LITPLSEKMAQRIRIKATDSVIVQDFKSGLWVKDGHSFVNVEEVLADTTLLNIHIYEFDD 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +        +  D Q   L           S  +  +   ++         + +++
Sbjct: 180 KFNLRTVSHAHKGLYEDEQWH-LKSVSQTHLDKDSNHVEHLDKATWRSLIRPELLNVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L     ++     +    Y+     +L   L  ++  ++++  A      R
Sbjct: 239 LPEKMSAWNLY-AYIDHLAANKQKTTRYKMALWAKLVYPLASLVMVILALPFAFI--QQR 295

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                  IFI + +           +H    N +      +    +  +  L
Sbjct: 296 ATGASTKIFIGIMLGILYQTLNQTFVHLGLLNDWAPAFSAITPTALFLLGGL 347


>gi|157374155|ref|YP_001472755.1| permease YjgP/YjgQ family protein [Shewanella sediminis HAW-EB3]
 gi|157316529|gb|ABV35627.1| permease YjgP/YjgQ family protein [Shewanella sediminis HAW-EB3]
          Length = 352

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 114/355 (32%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  +LYI R I  S  +  L +  ++ +I+ + ++ LV   + ++        +LIP  
Sbjct: 1   MRILDLYIARTIVSSSALCLLILTGLSGIIKWVDQLRLVGRGSYTMLDAGIYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M  P    +     +  +  N+EL+++ ++G SR  +    +  AI L + +      
Sbjct: 61  LEMFFPLGVLLGALIGMGMLASNSELVVMQSSGLSRWQITLSAMKTAIPLMLLIMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P       +L A      +       ++ +  D         + N+            
Sbjct: 121 GAPVAEQKANELQATKLSGGSLIKSSRGIWAKDGDLFVNIGEVEDINHLGNITLYEFDET 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +  +A+ G    D     L D      +     ++ +    +         S + +
Sbjct: 181 LSLVRTIHAEHGVYSND--HWRLMDVRQTDLTEDKVTLTDLTLYRWESTLTPDKLSVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++  L+    +      +    Y     ++L Q +   +  L+++          
Sbjct: 239 KPESLSIQGLM-GYLDYLKVNNQDSARYELALWRKLLQPVTVGVMMLVALSFVFGPLRTV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  + +    SF +       +  +   P +I      +   +     + K
Sbjct: 298 TMGARVLLGVIAGFSFYISSEIFGPLTLVYGVPAFIGAGMPAVIFSAGAVYFIRK 352


>gi|325136762|gb|EGC59362.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M0579]
          Length = 356

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 117/357 (32%), Gaps = 4/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLLSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +       +  + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGN--TGLWLKEKNSIINVREMLPDHTLLGIKIWARND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++     +  L +           ++SI   +++ +  +      +++
Sbjct: 179 KNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L      +     +    Y   + ++L       +  L++     +     
Sbjct: 239 KPDQMSVGELT-TYIRHLQNNSQNTRIYAIAWWRKLVYPAAAWVMALVAFAFTPQTTRHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    I L + F +         ++   P ++    L     + + + +I+K+
Sbjct: 298 NMGLKLFGGICLGLLFHLAGRLFGFTSQLYGIPPFLAG-ALPTIAFALLAVWLIRKQ 353


>gi|167032002|ref|YP_001667233.1| permease YjgP/YjgQ family protein [Pseudomonas putida GB-1]
 gi|166858490|gb|ABY96897.1| permease YjgP/YjgQ family protein [Pseudomonas putida GB-1]
          Length = 371

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 119/353 (33%), Gaps = 26/353 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   +       +L  I G+ +P  L 
Sbjct: 2   IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLFLIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A L+++ +      + 
Sbjct: 62  LILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGLTMAPAALVALLVAWLSLSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P   + ++Q+ ++      F  L    F   R    +       +    L G+FI + R 
Sbjct: 122 PLGVAQVQQIISQQDALTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRINLAGVFISEKRF 181

Query: 181 TQTHKIYYAQSGSIDLDRQAII---------LNDGEVHRKSPISKDISIMKFKSYTLQTE 231
            Q      A S  +       I         L +G  +  +P   D   +K+ +Y +   
Sbjct: 182 NQDKTKDRAPSVLVAEKGHQEIQADGNRYLVLENGYRYDGNPGQADYRAIKYDTYGVLLP 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               +  V +      S L+           +     R+E   R++  +   +  L+++ 
Sbjct: 242 KPEVAEEVTEREAIPTSELI----------GKKGLRERAELQWRISLPILVFVVTLLAVP 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLF 342
                 +  ++ +   +  ++ +          +   +   + P  + + ++ 
Sbjct: 292 L---SRVNPRQGRFLKLLPAILLYMAYLTMLISVRGALEKGKLPIALGMWWVH 341


>gi|327481778|gb|AEA85088.1| permease [Pseudomonas stutzeri DSM 4166]
          Length = 353

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 113/356 (31%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     IV +A +   +  +  V      L   L+      P  
Sbjct: 1   MVKLDRYIGIHVFLAILTVLGIIVGLALLFAFIDELGDV-QGNYGLGDALQYVLLTSPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L ++  ++EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  LYDMLPMAALIGCLIGLGTLASSSELTIMRAAGVSLGRIVLSVMKPMLVLLVAGILIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   + AQ A      +  L+ R +++     +       +         +
Sbjct: 120 VAPLTEDIAQARRSLAQGAGEAQSSKRGLWHRQENEFVHVNAVQPGGVLVGVTRYRFDEE 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +     +A+  S   D     L +           +++    + + +Q       T+V+
Sbjct: 180 RRLLSSSFARRASYQGD--HWRLENIATTHFRGDHTEVARAPEERWDVQLTPQLLGTVVM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    +++ L     +    +      Y   F  ++ Q    V   L++I          
Sbjct: 238 EPEALSITGL-WRYIHYLGEQGLNNSRYWLAFWTKVLQPAVTVALVLLAISFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              +     + +   F +         ++      + ++ L     + I   ++++
Sbjct: 297 TLGQRIFTGVVVGFVFRIIQDLLGPASQVFGFSPLLAVV-LPACVCALIGAWLLRR 351


>gi|251792101|ref|YP_003006821.1| permease [Aggregatibacter aphrophilus NJ8700]
 gi|247533488|gb|ACS96734.1| conserved permease [Aggregatibacter aphrophilus NJ8700]
          Length = 355

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 123/357 (34%), Gaps = 3/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + E YI + I  +   + L +V ++ +I+ +++   V   T  +   +  +   +P  
Sbjct: 1   MNTLERYIGKSILGTIFATLLMLVGLSAIIKFVEQFRSVGKGTYDIWQAIAYTVLTMPKD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ ++G SR+ +   V+   I L +   I    
Sbjct: 61  VETFFPMAALLGALIALGNLASRSELVVMQSSGFSRMRIGLAVMKTTIPLVLLTMIIGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+      +      ++       +N  +  D + ++ +   + +  L+ I+I    +
Sbjct: 121 GIPQT-EQFARDMRSKAISGGSMLSVKNGIWAKDGNNFVYVRNISDDVELRDIYIYTFNE 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +     + +   D + + L         P S +      + +             L
Sbjct: 180 QRRLEKLKHANHAAFNDGKWM-LKQVNESTIQPDSVNTVNRLNEEWQTNLTPDKLGVASL 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    ++S L +          +  + +   + ++L Q +   +  ++++          
Sbjct: 239 RPTSLSISGL-SSYITFLKETGQDSKNFELTYWRKLFQPISVGVMMMLALSFIFGPLRSV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I I     F V          +      I  L   +  ++  + L+ +K+
Sbjct: 298 TAGARILIGICFGFLFYVVNELFGKFSLVYNTTPLIGALMPSMLFLAITWWLLARKR 354


>gi|256823038|ref|YP_003147001.1| permease YjgP/YjgQ family protein [Kangiella koreensis DSM 16069]
 gi|256796577|gb|ACV27233.1| permease YjgP/YjgQ family protein [Kangiella koreensis DSM 16069]
          Length = 370

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/370 (14%), Positives = 127/370 (34%), Gaps = 25/370 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  S       +  I    +I++ +   ++   S +++ ++ G   P ++ 
Sbjct: 2   ILSRYLNREVLTSTTAILGVLFAIFMSQRIVKYLAQAAAGDISGSMVWQMVGLYSPILIG 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P  F +      + +  ++E+ ++ + G S   LI+ +   A+ +++        + 
Sbjct: 62  FLLPLAFFLGCLLAFSRLYVDSEMAVLRSVGVSERFLIRMLAPAALFIAVVGGAVTLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+      Q+  +    L  S L    F        +  +  +  +T  G F +    ++
Sbjct: 122 PQANELTYQIRDEHASKLELSMLTPGHFQMFQQGQGVVYADSSERSTKLGNFFLAEMPSE 181

Query: 183 THKIYYAQSGSIDL-------DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            +      S            D+  + LNDG V+      +   + +F+ Y  + ++  S
Sbjct: 182 MNPNTRIISAQSAERFYDESLDKNFLQLNDGHVYELDGNQQVSKVTRFERYFARLDAERS 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                K +  +   LL                  +EFH RL   +   +F  ++I     
Sbjct: 242 IVSRRKISATSTPELL----------ASGDGASWAEFHWRLAVPISVPLFMFLAI---PL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-----NPYYIPILYLFLFCISSIF 350
             +  +  K   +  +L +  G           +E         +IPI  +  F  + + 
Sbjct: 289 SRVRPREGKFAKMLPALMVYIGYIVLIVVFRRALESEQIPGWLGFIPIYLVMAFLAARLL 348

Query: 351 LLMIKKKYTK 360
            L  +    K
Sbjct: 349 YLHGRSNSPK 358


>gi|218710648|ref|YP_002418269.1| hypothetical protein VS_2728 [Vibrio splendidus LGP32]
 gi|218323667|emb|CAV19979.1| hypothetical permease [Vibrio splendidus LGP32]
          Length = 368

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 119/360 (33%), Gaps = 23/360 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + +  +   S      +++L I G  +P +  
Sbjct: 4   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFISVLADASDGDIPASLVLSIVGLNMPAMGL 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     LI+  L+LA++ +     +   + 
Sbjct: 64  LMLPLSIYIGILLTFGRLYAESEIVVMNATGIGNKFLIQSALYLALITATVAAFNSFWLS 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +  ++Q+  +     +   L +  F R  D   +   +    N L  +F+   R   
Sbjct: 124 PWSQDKVEQMYEEVAAENSVDLLPKGKFARTPDGSSVVFIEGIDGNQLDNVFVSQMRPRD 183

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +               +   RQ I++ DG  H   P   D  +  F+ Y           
Sbjct: 184 SVLPSVMFSKSGDVKELSDGRQVIVMYDGTRHEGVPSRLDYRVTHFEEYEGLIGQREVEK 243

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +        L+                 ++E   R++     +   L++++     A
Sbjct: 244 KGREWEAIPTIDLI----------GNQDNRAKAELQWRMSL---VLCIPLLTMLVVPLSA 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-----PYYIPILYLFLFCISSIFLL 352
           +  ++ +   I  ++ I    F   S     IE+          PI  L LF       +
Sbjct: 291 VNPRQGRFAKIGPAILIYLTYFLAISATKSSIEEGDIPAAIGMWPINALLLFVAIGANFM 350


>gi|227114630|ref|ZP_03828286.1| putative permease [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
 gi|227327172|ref|ZP_03831196.1| putative permease [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 358

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 111/355 (31%), Gaps = 2/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + + +   +V ++ +I+ + ++  V     S       +   +P  + +
Sbjct: 5   LDRYIGKTIFTTIMTTLFMLVSLSGIIKFVDQLRKVGQGEYSALGAGLYTLLSVPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  +   +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLTMAIGEWVSP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   ++     +    +  L+ +  +D                         + 
Sbjct: 125 QGEQMARNYRSQMISGGSMISTQGGLWAKDGNDFIYIERVTGDKELSGVNIYHFDDKNKL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTIVLKA 242
             + YA S   + DR    L+  +    S   +      F   +           + L+ 
Sbjct: 185 LSVRYAASAEFEDDRNVWKLSQVDESDLSDGKQIGGSQTFSGEWKTNLTPDKLGVVALEP 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++  L N          +    Y+     ++   +   +  L+++            
Sbjct: 245 DALSIRGLHN-YAKYLKQSGQESNRYQLNMWSKIFAPVSVAVMMLMAVSFIFGPLRSVSA 303

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                I IS    F +       +  +   P  +  +      +     L++K++
Sbjct: 304 GSRIVIGISFGFLFYLLNEIFRPLSLVYGIPPILGAILPSSVFLFISVALLLKRR 358


>gi|254498610|ref|ZP_05111329.1| permease [Legionella drancourtii LLAP12]
 gi|254352150|gb|EET10966.1| permease [Legionella drancourtii LLAP12]
          Length = 354

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/357 (10%), Positives = 108/357 (30%), Gaps = 4/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI + +  S  +  L +V +  +  +  ++  +      +          +P  
Sbjct: 1   MRILDRYIAKTVLTSIGLVTLMLVGLQILFYLFDQLGDLGKLDYGITQAAFFVLMQMPYQ 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     L +M  ++EL+++  +G S + +   VL  ++LL   + +    
Sbjct: 61  VYLFFPMASLLGCLIGLGAMANHSELVVMRASGMSILQITGAVLKASVLLIFLVTVLGET 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P            +          +  + R  +D          N             
Sbjct: 121 VVPYLSHYANDYKTASVSGGQTIRTAKGFWLRHGNDFISVGRILPNNVLQNIYQFRFDEQ 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                    +        Q  +  + +                  + +  +    +   +
Sbjct: 181 HHLKLARLIREAKY--SEQGWVAYNVQQTEFVVDHTRAQTFATLPWDVPVKPKILNISSI 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           + ++  L  L N          + +  Y+  F +R+ Q    ++  +++I          
Sbjct: 239 EPDEMTLHEL-NRYIREQKRSHQNVHNYQFAFLQRIIQPFTTMVMMVLAIPFIFGPLRSS 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
                  +  ++   F +   F   +  + Q P     +   FLF +  ++L+   +
Sbjct: 298 TMGSKLLVGAAVGFGFHILSRFFGPVSSVFQLPAGLAALGPTFLFALLGLYLMRRVR 354


>gi|148977743|ref|ZP_01814299.1| hypothetical protein VSWAT3_21150 [Vibrionales bacterium SWAT-3]
 gi|145962957|gb|EDK28227.1| hypothetical protein VSWAT3_21150 [Vibrionales bacterium SWAT-3]
          Length = 356

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 125/355 (35%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +  +  V ++ +I+ ++++  V   T  L   L      IP  +
Sbjct: 3   KILDLYIGRTIIATTSLVLVTFVGLSGIIKYVEQLRKVGRGTYDLLQALYFVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGMLAASSELVVMQAAGFSKLDIGFSVLKTAIPLMIVVTLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +      +A       ++  +  D + +I I K + +            + 
Sbjct: 123 APQAQ-KMARDLRTISIAGGNIISTQSGVWARDANDFIFIVKIDDDKLYGMNMWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                 Y++      D    + +      ++ +      +   ++         + + +K
Sbjct: 182 ALKTAIYSKEVDYVGDNVWTMKDVVVTSFENELQITKENLPTYTWKTSLAPDKLAIVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +   +      +    Y     +++TQ +   +  L+++           
Sbjct: 242 PEELSLSGLYD-YVSYLKASEQDAARYELALWRKITQPISIAVMMLMALSFIFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   +  + Q P    +L   +  +    +L+ +K
Sbjct: 301 MGARILSGVIAGFTFYISSEFFGPVSLVYQIPPAFGVLAPSVVFLGIAVMLLRRK 355


>gi|254282266|ref|ZP_04957234.1| permease YjgP/YjgQ family protein [gamma proteobacterium NOR51-B]
 gi|219678469|gb|EED34818.1| permease YjgP/YjgQ family protein [gamma proteobacterium NOR51-B]
          Length = 353

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 109/357 (30%), Gaps = 5/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI R I          +V +  +  I+     +S        ++   G  +P  
Sbjct: 1   MGKIDRYIGRAILGGTFAVLGVLVGLDALSTIVDEAEDLSDR-YGFIDMMSYVGLTLPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   +     L  +  ++EL+++ + G S   L   V+  A+L ++  F+  + 
Sbjct: 60  IHEFMPFAALIGALVGLGRLAGSSELVVVRSAGVSIGQLAISVMKPALLAAVVGFVVGDF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P          A AQ + +        + R         +                 D
Sbjct: 120 IAPSSEQLAITQRALAQRSESTVSARHGSWNRDGGTFIHVSAVQRGGVAYGLSLFSFDED 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +   A+ G+   D    +L +  + +       +S      +  Q         V+
Sbjct: 180 KHLVRSLNAERGTYRGD--HWLLEEVVLTQLESEKTTVSQYLTWRWNTQITPDLLVLEVV 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +     +  L  P       +          F +++TQ L      L+++          
Sbjct: 238 EPESLPVFKL-WPWAKFLEQQGLTATDIELAFWRKVTQPLAIAGLVLVAMSFIFGPLREG 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    + + + F +   F      +   P  +  +   LFC  +  + ++ ++
Sbjct: 297 SMGARIFAGVIVGVMFRISQDFFGPASVLFGLPPVLAAITPILFCWLA-GIWLLNRR 352


>gi|77457217|ref|YP_346722.1| permease YjgP/YjgQ [Pseudomonas fluorescens Pf0-1]
 gi|77381220|gb|ABA72733.1| putative ABC transport system, membrane protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 373

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 120/365 (32%), Gaps = 28/365 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   ++       L  I GY +P  + 
Sbjct: 2   IVFRYLSREVLLTLSAVSAVLLVIIMSGRFIKYLAQAAAGQLDPGSLFLIMGYRLPGFMQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L +  LF A L+++ +      + 
Sbjct: 62  LILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLFRMTLFPATLVAVVVAWLSLSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P+  +  + L  K      F  LE   F   R    +    +  +    L  +FI     
Sbjct: 122 PQGANQFQLLLNKQDALTEFDTLEPGRFQALRDGTRVTYTETLSDDRVNLGSVFISQKNL 181

Query: 181 TQTHKI-----YYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
               K        A+ G         + +IL++G  +  SP   +   + +++Y +    
Sbjct: 182 GANQKDRGISVLVAEKGRQEVRPDGNRYLILDNGYRYDGSPGQANYRAIHYETYGVLLPK 241

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            + S  V   +    S LL                 ++E   RL+  L   I  L+++  
Sbjct: 242 PDVSEEVTDRDAMPTSSLL----------GSDDIRSKTELQWRLSLPLLVFIVTLMAVPL 291

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-----PYYIPILYLFLFCIS 347
                +  ++ +   +  ++ +              +E+           +  +FL    
Sbjct: 292 ---SRVNPRQGRFLKLLPAILLYMAYLTILIAARGALEKGKIPPALGLWWVHAIFLTIGL 348

Query: 348 SIFLL 352
            +   
Sbjct: 349 GLLYW 353


>gi|146283386|ref|YP_001173539.1| permease [Pseudomonas stutzeri A1501]
 gi|145571591|gb|ABP80697.1| predicted permease [Pseudomonas stutzeri A1501]
          Length = 373

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/366 (12%), Positives = 125/366 (34%), Gaps = 26/366 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   +       +LL I G+ +P  L 
Sbjct: 2   IVFRYLSRELLVTMSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLLLIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A L++  +      + 
Sbjct: 62  LILPLGLFLGILLAYGRLYLESEMTVLSATGMSQRRLLAYSMAPAALVAALVGWLSLGLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P+  + + ++  +      F  L    F   R    +          + L G+FI ++  
Sbjct: 122 PQGIAEVDRILNQQDSLTEFDTLVPGRFQTLRGGSRVTYTRELSADRSELGGVFISETNV 181

Query: 181 TQTH---------KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           ++                +        + +IL +G  +  +P   D   +++ +Y +   
Sbjct: 182 SRQTGKESGLSVLVAESGRQEIQPDGSRYLILENGYRYDGNPGQADYRAIQYDTYGVLLP 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               S  + +        LL                +R+E H RL+  L   +  ++++ 
Sbjct: 242 KPEVSMELSEREAMPTRELL----------GSDNLRHRTELHWRLSLPLLVFVVTVLAVP 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSI 349
            A    +  ++ +   +  ++ +          +   +   + P  + + ++    ++  
Sbjct: 292 LA---KVNPRQGRFLKLLPAILLYMTYLALLIAVRGALDKGRLPMALGLWWVHGLFLAIG 348

Query: 350 FLLMIK 355
            L++  
Sbjct: 349 LLMLFW 354


>gi|189425645|ref|YP_001952822.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
 gi|189421904|gb|ACD96302.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
          Length = 379

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 132/344 (38%), Gaps = 8/344 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y++R I   F +       +  + ++++ + +V ++   L  +L++   L+P+ L
Sbjct: 4   RIINRYLMREIVGIFALGLTIFTLVLLMGRMVKLMEMVVANGVPLAEVLRLILLLLPSFL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +        ++ + E+ ++   G S  TL+ PVL  A   ++       + 
Sbjct: 64  VLTIPMAFLLAVLLAFGRLSNDNEITVLKACGLSLGTLLPPVLLTAAAAALLTLFISVVA 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRD 180
            P   +  KQ++         S + E +F      + + + +Y+    T+Q + I DSRD
Sbjct: 124 VPWGNTGFKQMTMDVARKYAASAIRERIFRDDLPGIVLYVDQYDEARRTMQRVMIQDSRD 183

Query: 181 TQTHKIYYAQSGSIDLDRQAIILN----DGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +     +A+SG +  D    +L     +G +H  +    D  ++ F  Y L  ES  S+
Sbjct: 184 PERPLTIFAKSGLVSSDEVNGVLRILLKNGSIH--TQHKNDYRLVSFGEYLLTAESGRST 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V    D  +  L   +  +P   P+      +E H R        +F ++++      
Sbjct: 242 PPVRTELDLGIGELQRGS-RSPQLAPQARLKMATELHSRFAFPCATFVFAILALPLGLSN 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
               +        + L + + +      +  K    P     L 
Sbjct: 301 RRSGKGSGFTISILILLVYYVLLSFLRTLAEKGGIPPALAVWLP 344


>gi|78184805|ref|YP_377240.1| permease [Synechococcus sp. CC9902]
 gi|78169099|gb|ABB26196.1| possible permease [Synechococcus sp. CC9902]
          Length = 384

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/377 (13%), Positives = 130/377 (34%), Gaps = 21/377 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + ++L  I    L +      +   I ++  +         + + L++    IP+ 
Sbjct: 12  LSLLDRWLLAEIAAPLLFAVAAFTVLGLSIGVMFELARRLVDGLPILVALQLLLLNIPSF 71

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P      T    + ++ N+EL  + + G S I L+ P L L+ILL+   F+  ++
Sbjct: 72  LVLSLPMATLFATLLAYSKLSSNSELTALRSLGVSTIRLVVPALALSILLTGLTFVFNDV 131

Query: 121 IEPKCRST-------------IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN 167
           I P+  +                +              +            +  ++    
Sbjct: 132 IVPRANTQAEITLQRGLGRALATERGKDITFNSFGKIYDPKTQTSSTGLRQLFYARRYEG 191

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             +  + ++D       +++ A+    +  +      +G+V   +P +   + + F    
Sbjct: 192 GEMLDVTLLDFSRADYRQMWIAERAVYNESKAMWEFFNGQVLTLNP-NGSTTRLAFDENF 250

Query: 228 LQTESANSS--TIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLFPVI 284
               S       +   AND  LS  ++      N    +     R    ++ +  +  ++
Sbjct: 251 YPLSSGPLQVAELPDDANDMTLSQAISAEKVESNAGNIKAARKLRVRIQEKFSFPMACIV 310

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           FGLI      +     +  +     +S+ +  G ++  S     +  +    P L  +L 
Sbjct: 311 FGLIGSSLGARPGS--RTSRSQGFGVSILLILG-YYALSVSFSSLGVSGILPPFLAAWLP 367

Query: 345 CISSIFL-LMIKKKYTK 360
            + S+    ++ ++ ++
Sbjct: 368 VLISLGAGGLLLRQASR 384


>gi|71908693|ref|YP_286280.1| permease YjgP/YjgQ [Dechloromonas aromatica RCB]
 gi|71848314|gb|AAZ47810.1| permease YjgP/YjgQ [Dechloromonas aromatica RCB]
          Length = 362

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 122/361 (33%), Gaps = 7/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +  ++ Y++R    S  +     + +      +  +  V  +  S+          +P +
Sbjct: 5   LNLYQRYLIRETFASVFLVLAAFLALFAFFNFIDELRTVGKAGYSVVHAALFVALSMPGL 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + T   L+++ R++E+ ++  +G +   L+  +   A+LL++  F+    
Sbjct: 65  VYELIPIATLIGTLYALSTLARHSEITVLRASGLATSDLLMTLFRAALLLALLTFVIGEA 124

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      K++ AKA   +      ++  +  D   +I I K  P+  L+G+ I     
Sbjct: 125 VVPFSERLGKEIRAKALSTVIAQSGFDSGLWVKDGRSFINIRKAAPDEPLEGVRIYHFSQ 184

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +       +   D     L           +  +   +   +         + +++
Sbjct: 185 QNLLESVTDAQAADFEDPDLWRLRGVVRTVLEGDTSRVESTQTGEWRSTVTPTLLAALMV 244

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +L  LLN    +     +  E Y     K++   L  ++   +++      +  R
Sbjct: 245 SPERMSLFGLLN-YTKHLTENKQKTERYEIALWKKVVYPLAALVMVALALPFGY--SHNR 301

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF----LLMIKK 356
                  IF  + +    +       +    N +   I       +  +     L  +++
Sbjct: 302 VGGVSLKIFAGVMLGILFYALNGLSSNLGAINSWSPIISATAPSGLFLLVATGMLWWVER 361

Query: 357 K 357
           +
Sbjct: 362 R 362


>gi|146292282|ref|YP_001182706.1| permease YjgP/YjgQ family protein [Shewanella putrefaciens CN-32]
 gi|145563972|gb|ABP74907.1| permease YjgP/YjgQ family protein [Shewanella putrefaciens CN-32]
 gi|319425582|gb|ADV53656.1| inner membrane component of lipopolysaccharide transporter, LptF
           [Shewanella putrefaciens 200]
          Length = 370

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 136/371 (36%), Gaps = 25/371 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  IP ++ 
Sbjct: 2   IVFRYLIREVFKAQIAVLLVLLTIFISQHFVRILADASDGEFPASLIVTLIGLNIPALVV 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M    E++I+   G S   + +  L LA++  +F       + 
Sbjct: 62  LVLPLSLFLGILVAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVVNMLFTGYLSLYVT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS---- 178
           P       Q+  KAQ     + L +  F    +   +   +    +       V      
Sbjct: 122 PWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELEKVFVAQLPDP 181

Query: 179 -RDTQTHKIYYAQSGSIDLDRQ---AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             +T    +  A++G +  D      + LN+G  ++ SP  KD  +++F  Y +Q +   
Sbjct: 182 SDETGVTNVVVAKNGRVLEDNMGAQQLQLNNGVRYQGSPRLKDYQMIEFGGYKMQIKEQQ 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +   ++ LL                  +EFH RL   L   I  LI++  A 
Sbjct: 242 VDERRRKLSALTVTDLL----------KVESAEAVAEFHWRLAIPLAIPIMTLIAVPLA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +  ++ +  G F         +     P Y+ + ++ L  +     L
Sbjct: 291 --RVNVRQGKFAKMLPAVLLYLGYFGLMVAGRKALQDGVIPQYLGMWWIHLSALIMGIFL 348

Query: 353 MIKKK--YTKI 361
           + K +  + ++
Sbjct: 349 LGKDRPLFARL 359


>gi|152985629|ref|YP_001346669.1| hypothetical protein PSPA7_1284 [Pseudomonas aeruginosa PA7]
 gi|150960787|gb|ABR82812.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 355

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 111/356 (31%), Gaps = 3/356 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     I+ +A +   +  +N +S+S   +   L+      P  
Sbjct: 1   MVKLDRYIGVTVFVAILAVLGVILGLALLFAFIDELNDISAS-YGIGEALRFIALTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L ++  N+EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  AYDMLPMAALIGCLVGLGTLASNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   A AQ        +  L+ R   +     +                  
Sbjct: 120 VAPWTENIAQSGRALAQGGGDSQSSKRGLWHRQGREYIHINAVQPNGVLYGVTRYRFDEQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+    + D   +      +        ++  +  + +  Q      +T+V+
Sbjct: 180 RGLQSASFAKRARFETDHWQLEDVTTTLLHPQEKRSEVVKLPTERWDAQLSPQLLNTVVM 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    ++S L     +    +      Y   F  ++ Q L      L++I          
Sbjct: 240 EPEALSISGL-WQYIHYLADQGLNNNRYWLAFWTKVLQPLVTAALVLMAISFIFGPLRSV 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              +     + +   F +          +   P  + ++ +     +   L ++++
Sbjct: 299 TLGQRIFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVV-IPASACALAGLWLLRR 353


>gi|86147550|ref|ZP_01065860.1| putative permease [Vibrio sp. MED222]
 gi|85834589|gb|EAQ52737.1| putative permease [Vibrio sp. MED222]
          Length = 366

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 119/360 (33%), Gaps = 23/360 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + +  +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFISVLADASDGDIPASLVLSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSIYIGILLTFGRLYAESEIVVMNATGIGNKFLIQSALYLALITATVAAFNSFWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +  ++Q+  +     +   L +  F R  D   +   +    N L  +F+   R   
Sbjct: 122 PWSQDKVEQMYEEVAAENSVDLLPKGKFARTPDGSSVVFIEGIDGNQLDNVFVSQMRPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +               +   RQ I++ DG  H   P   D  +  F+ Y           
Sbjct: 182 SVLPSVMFSKSGDVKELSDGRQVIVMYDGTRHEGVPSRLDYRVTHFEEYEGLIGQREVEK 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +        L+                 ++E   R++     +   L++++     A
Sbjct: 242 KGREWEAIPTIDLI----------GNQDNRAKAELQWRMSL---VLCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-----PYYIPILYLFLFCISSIFLL 352
           +  ++ +   I  ++ I    F   S     IE+          PI  L LF       +
Sbjct: 289 VNPRQGRFAKIGPAILIYLTYFLAISATKSSIEEGDIPAAIGMWPINALLLFVAIGANFM 348


>gi|253702061|ref|YP_003023250.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
 gi|251776911|gb|ACT19492.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
          Length = 360

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 119/358 (33%), Gaps = 9/358 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI R   +   +     + I  V+  +++++  + +  S   L       IP +
Sbjct: 1   MTILTRYIARAYLKMLSLCLGSFLTIYLVVDFMEKVSRFTRAGASWKHLALFFITKIPEM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    M T   L +++  +EL  I + G S   +  P+L +++L+S+ +      
Sbjct: 61  IIDAAPLAVLMATLLTLGTLSLTSELTAIRSCGVSLFRISLPILVISVLMSLGVLAIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI--VDS 178
           + PK  +    +        + S           ++  +  +        +   I   D 
Sbjct: 121 VLPKSFAQRTYIQEVLIQKKSASAFFRQQNIWFREEGTVLRASLFEPARNELKGITLWDL 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSST 237
           +      +   ++    L  +  +L D  V +        +    +    LQ + A+  T
Sbjct: 181 QPGTGEPLKRTEADLALLGPKGWVLRDAVVRQFRDGEVSATQKYRELPVQLQLKPADLKT 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +   ++  +L  L N               Y ++ H R++      +   + I  A +  
Sbjct: 241 LGKYSDSMSLVEL-NRYCRKLRASGYDPTRYVTQMHSRISMPFGCAVMAFLGIPFALRGG 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIFLLM 353
             R       + +S+ + F      S II  + Q     P++  +   F        +
Sbjct: 300 --RSSGIAFGVGLSIGVGFLYVIVNSVIIS-VGQVGLLPPVVAAWATNFIFFVAGAWL 354


>gi|315634607|ref|ZP_07889891.1| YjgP/YjgQ family membrane protein [Aggregatibacter segnis ATCC
           33393]
 gi|315476555|gb|EFU67303.1| YjgP/YjgQ family membrane protein [Aggregatibacter segnis ATCC
           33393]
          Length = 355

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 114/357 (31%), Gaps = 3/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + E YI + I  +   +   +V ++ +I+ +++   V   T  +   +  +   +P  
Sbjct: 1   MNTLERYIGKSILGTIFATLFMLVGLSAIIKFVEQFRSVGKGTYDILQAIAYTVLTMPKD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ ++G SRI +   V+   I L +   +    
Sbjct: 61  VETFFPMAALLGALIALGNLASRSELVVMQSSGFSRIRIGIAVMKTTIPLVLLTMVIGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+      +      ++       +N  +  D + ++ +   + +  L  I+I     
Sbjct: 121 GIPQT-EQFARDMRSKAISGGSMLSVKNGIWAKDGNNFVYVRSISDDVELNDIYIYTFN- 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q        +     +     L      R  P          + +             L
Sbjct: 179 EQRQLEKMKHANQASFNNGKWTLRQVNESRIQPDEVVTINRLNEDWETNLTPDKLGVASL 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    ++S L N          +    +   + ++L Q +   +  ++++          
Sbjct: 239 RPTSLSISGLSN-YIAFLKETGQDSRNFELTYWRKLLQPVSVGVMMMLALSFIFGPLRSV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I IS    F V          +      I  L   +  +   + L+ +++
Sbjct: 298 TAGARILIGISFGFLFYVVNELFGKFSLVYNTTPLIGALMPSVLFLLITWWLLARRR 354


>gi|310822424|ref|YP_003954782.1| hypothetical protein STAUR_5183 [Stigmatella aurantiaca DW4/3-1]
 gi|309395496|gb|ADO72955.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 371

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/367 (15%), Positives = 136/367 (37%), Gaps = 11/367 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+L+ +     +   F+  + +V+Q L    ++  S  +L  + ++  YL P  
Sbjct: 1   MILLARYLLKELLAPLGVWVAFMFLLLFVMQFLLGTEVLLGSAVTLTDIGRLILYLTPHF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F M     L  ++ + EL  +   G S + L+   + + +LL+  + +    
Sbjct: 61  LVKALPIAFLMAILLGLGRLSEDRELTALQALGISPVQLLLGPMAIGLLLAGLMALLAFT 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
            +P   +++K+L  +         ++  +F+    DL +   + +        + + D R
Sbjct: 121 AQPWGLTSVKELVNEVIKKNVAGDVKSGVFYEDLSDLTLYAERVSREGGEWTHVLLHDDR 180

Query: 180 DTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTE---- 231
           +  +  +  AQ G + +        ++L +GEVHR +  + D S+++F+   +       
Sbjct: 181 EPSSPLLVLAQRGRVSMREGDEALRLVLEEGEVHRATRSTADYSLLRFEQGEISVGLGGS 240

Query: 232 -SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            +  S+    +  + +   L+                +    H RL   + P+ F L+  
Sbjct: 241 MNRKSNRFRSQKEEMSPGELIQA-AEEAEKSGGNPRPFLMAIHMRLGNAVAPLSFALLGT 299

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             A  R    +            + + +   F  + ++ +        L   LF +  + 
Sbjct: 300 PLAIGRKQAGRAWGYLLTLSGYVLFYVLSRVFETLGNQEKLPMVLAAQLPNILFSVLGVV 359

Query: 351 LLMIKKK 357
            +    +
Sbjct: 360 AMWRVSR 366


>gi|146283385|ref|YP_001173538.1| permease [Pseudomonas stutzeri A1501]
 gi|145571590|gb|ABP80696.1| predicted permease [Pseudomonas stutzeri A1501]
          Length = 353

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/356 (12%), Positives = 114/356 (32%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + LM    IV +A +   +  +  V   +  L   L+      P  
Sbjct: 1   MVKLDRYIGIHVFLAILMVLGIIVGLALLFAFIDELGDV-QGSYGLGDALQYVLLTSPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L ++  ++EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  LYEMLPMAALIGCLIGLGTLASSSELTIMRAAGVSLGRIVLSVMKPMLVLLVAGILIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   + AQ A      +  L+ R +++     +       +         +
Sbjct: 120 VAPLSEDIAQARRSLAQGAGEAQSSKRGLWHRQENEFVHVNAVQPGGVLVGVTRYRFDEE 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +     +A+  S   D     L +           ++     + + +Q       T+V+
Sbjct: 180 RRLLSSSFARRASYQGD--HWRLENIATTHFRGDHTEVMRAPEERWDVQLTPQLLGTVVM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    +++ L     +    +      Y   F  ++ Q    V   L++I          
Sbjct: 238 EPEALSITGL-WRYIHYLGEQGLNNSRYWLAFWTKVLQPAVTVALVLLAISFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              +     + +   F +         ++      + ++ L     + I   ++++
Sbjct: 297 TLGQRIFTGVVVGFVFRIIQDLLGPASQVFGFSPLLAVV-LPACVCALIGAWLLRR 351


>gi|113953439|ref|YP_730497.1| membrane protein, YjgP/YjgQ family protein [Synechococcus sp.
           CC9311]
 gi|113880790|gb|ABI45748.1| putative membrane protein, YjgP/YjgQ family protein [Synechococcus
           sp. CC9311]
          Length = 392

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 136/375 (36%), Gaps = 21/375 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  +    L +      ++  +  +   +  +  S     I +++    +P+ L
Sbjct: 22  LIDRWLLGELIGPLLFALTAFTVVSLSVGVMFDLVRKIVESNLPWTIAVQVLLLKLPSFL 81

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M +    + ++ N+EL  + + G +   +I P + LA+L++   F+  ++I
Sbjct: 82  VISFPMATLMASLLAYSRLSANSELTALRSVGVTASRMIAPAIALALLMTSLSFLFNDVI 141

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL------------YIKISKYNPNNT 169
            P+   + +    +A      +   +++ +     +             +  ++   + T
Sbjct: 142 VPRTNRSAEFTLQRALGKAIAAEKGDDIVYSRFGRVAEPDGKSSKGLTQLFYAREFEDGT 201

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           + G+ ++D       ++  A     +  +     NDG++   +P     S   F  Y   
Sbjct: 202 MIGVTVLDLSRFGFTQMLVADKAKWNQSQAKWEFNDGQILTLTPSGSTTS-ADFDRYLYP 260

Query: 230 TESANSST--IVLKANDQNLSFLLNPNPNNPNY-RPELLETYRSEFHKRLTQWLFPVIFG 286
              A      +   AN+  +S  +       +    +     R    ++ T  +  ++FG
Sbjct: 261 LSPAPLRIAKLPKDANNMTVSEAIEAEQLLSDAGDRKEARRLRVRIQEKFTVPMACLVFG 320

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFC 345
           LI      K     +  +     IS+ + F V++  S+    +       P L  +    
Sbjct: 321 LIGSSLGAKP--NSRTSRSQGFGISVVLIF-VYYVLSFSFSSLGVKGTLAPFLAAWGPVL 377

Query: 346 ISSIFLLMIKKKYTK 360
           IS     ++ ++ ++
Sbjct: 378 ISLAGGGVLLRQASR 392


>gi|59711022|ref|YP_203798.1| inner membrane protein [Vibrio fischeri ES114]
 gi|59479123|gb|AAW84910.1| conserved inner membrane protein [Vibrio fischeri ES114]
          Length = 358

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 119/356 (33%), Gaps = 2/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  + +V ++ +I+ ++++  V   T  L   L      +P  +
Sbjct: 3   KILDWYIGRTIIATSALCLVTLVGLSSIIKYVEQLRKVGRGTYDLLDALYFVILSMPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++++   VL  AI L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLAASSELVVMQAAGYSKLSIGVSVLKTAIPLMLMVMALGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L          + +   ++ +  DD        N              + 
Sbjct: 123 APQAQKMARDLRTFEVSGGNIAAVRAGVWAKDADDFIYLARVENKEKLYGVTVWQFDDNQ 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEV-HRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + +A++ +    +    +ND  +   K         +    ++        + + +
Sbjct: 183 DLNNVIFARTATYQAAQDDWKMNDVSITQMKDKAVISEKKVDSLDWSTTLTPDKLAVVTV 242

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K  +Q+L+ L +   N           Y   F ++  Q +   +  L+++          
Sbjct: 243 KPEEQSLTGLYD-YVNYLKDSELDASRYELAFWRKALQPISVAVMMLLALSFVFGPLRSV 301

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                    +    +F +       +  +         L   L  ++    L+ +K
Sbjct: 302 TMGARILSGVIAGFTFYISNEVFGPMTLVYNIHPIFGALGPSLVFLAVTVGLLNRK 357


>gi|213968383|ref|ZP_03396527.1| membrane protein [Pseudomonas syringae pv. tomato T1]
 gi|213927021|gb|EEB60572.1| membrane protein [Pseudomonas syringae pv. tomato T1]
          Length = 378

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/366 (12%), Positives = 116/366 (31%), Gaps = 26/366 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L 
Sbjct: 5   IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQ 64

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A L+ + +      + 
Sbjct: 65  VILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAALVGLLVAWLSFSLA 124

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P+  +   QL  +      F  L    F   R    +          + L G+FI + R 
Sbjct: 125 PQGAAQFSQLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKRM 184

Query: 181 TQTHKIYYAQSGSIDLDRQ---------AIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           +         +  +               +IL +G  +  +P + D  ++K+ +Y     
Sbjct: 185 SNDKSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVVKYDTYGAALP 244

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               S  +        S L                   +E   R++  L   I  L++I 
Sbjct: 245 KPEISEEITDREAIPTSELF----------GNPAPRSVAELQWRISLPLSVFIVTLMAIP 294

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSI 349
                 +  ++ +   +  ++ +          +   +   + P  + + ++    +   
Sbjct: 295 L---SRVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHGIYLGIG 351

Query: 350 FLLMIK 355
            +L   
Sbjct: 352 LVLFYW 357


>gi|197335786|ref|YP_002155171.1| permease YjgP/YjgQ family protein [Vibrio fischeri MJ11]
 gi|197317276|gb|ACH66723.1| permease YjgP/YjgQ family protein [Vibrio fischeri MJ11]
          Length = 358

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 120/356 (33%), Gaps = 2/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  + +V ++ +I+ ++++  V   T  L   L      +P  +
Sbjct: 3   KILDWYIGRTIIATSALCLVTLVGLSSIIKYVEQLRKVGRGTYDLLDALYFVILSMPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++++   VL  AI L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLAASSELVVMQAAGYSKLSIGVSVLKTAIPLMLMVMALGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L          + +   ++ +  DD        N              + 
Sbjct: 123 APQAQKMARDLRTFEVSGGNIAAVRAGVWAKDADDFIYLARVENKEKLYGVTVWQFDDNQ 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEV-HRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           + + + +A++ +    +    +ND  +   K         +    ++        + + +
Sbjct: 183 ELNNVIFARTATYQAAQDDWEMNDVSITQMKDKAVISEKKVDSLDWSTTLTPDKLAVVTV 242

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K  +Q+L+ L +   N           Y   F ++  Q +   +  L+++          
Sbjct: 243 KPEEQSLTGLYD-YVNYLKDSELDASRYELAFWRKALQPISVAVMMLLALSFVFGPLRSV 301

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                    +    +F +       +  +         L   L  ++    L+ +K
Sbjct: 302 TMGARILSGVIAGFTFYISNEVFGPMTLVYNIHPIFGALGPSLVFLAVTVGLLNRK 357


>gi|294139610|ref|YP_003555588.1| hypothetical protein SVI_0839 [Shewanella violacea DSS12]
 gi|293326079|dbj|BAJ00810.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 370

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 137/365 (37%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  +P +L 
Sbjct: 2   IVFRYLIREVLKAQIAVLLVLLAIFISQHFVRVLADASDGEFPASLVMTLLGLNLPYLLV 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M  ++E++I+   G S   + +  L LA+   IF  +    + 
Sbjct: 62  LVIPLSLFLGILMAHGRMYADSEMVILHGVGVSEWYITRVTLLLAVGNMIFTAMLSVYVT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-----D 177
           P       Q+   AQ     + + +  F    +   +   +    N       V      
Sbjct: 122 PWAEERQNQVLENAQSEAGLAAITQGRFQTSPNGRAVLFVERIGRNNELQKVFVAQLPDP 181

Query: 178 SRDTQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             ++    I  A+ G +  D    Q + L+DG  ++  P   D  I++F  Y +Q +   
Sbjct: 182 DDESGMSNIVVAEGGKVIEDDTGGQRLQLSDGVQYQARPKHVDFQIIEFGGYQMQIKEQP 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +   ++ L++ +               +EFH RL   L   +  LI++  A 
Sbjct: 242 VDERRRKLSAMPINDLMDID----------GPAATAEFHWRLAIPLAIPLMTLIAVPMA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLL 352
              +  ++ K   +F ++ +  G F         +E    P Y+ + ++    +    LL
Sbjct: 291 --RVNVRQGKFAKMFPAILLYLGYFGLMIAGRKALEDGVVPEYLGMWWIHASALFLGILL 348

Query: 353 MIKKK 357
           + K++
Sbjct: 349 LSKER 353


>gi|302037952|ref|YP_003798274.1| putative YjgP/YjgQ family permease [Candidatus Nitrospira defluvii]
 gi|300606016|emb|CBK42349.1| putative Permease, YjgP/YjgQ family [Candidatus Nitrospira
           defluvii]
          Length = 363

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 127/365 (34%), Gaps = 9/365 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+LR   + F M    ++ I  VI   +++            +L      +P +
Sbjct: 1   MNILFRYMLREYVKIFGMCFAGLMTIYLVIDFFEKVRRFLRYDAHALDVLAYFVLKMPAI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    M T   +  ++R+ E+  + + G S   +  P LFL  +L++ LF   + 
Sbjct: 61  SYQIAPLAVLMATLLTIGLLSRSHEITAMRSCGISLYWITSPFLFLGTVLALVLFAFSST 120

Query: 121 IEPKCRST--IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           + P   +     + +   + A+  S      +  L     + I   +P   +     +  
Sbjct: 121 VIPLALAKAEQIKTTRIEKRAVPVSVKAAQPWVSLGGQTLMNIDTIDPGGAVLRKIRLYR 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                     A++       Q  +L DG           +S+  F++  L          
Sbjct: 181 LSPTFELEQIAEAQRAVYSPQGWVLEDGIRRSF-RQDGTVSVNSFQTEPLPLAQIPDDFT 239

Query: 239 VLKANDQNLSFL--LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                D     L  +    +  +    +L    ++++ R+       I  ++ I  + +R
Sbjct: 240 TWLELDSETMTLPEIRAYVDRLHLGGTILPRLLTDYYGRIAFPCVTFIMVVVGIALSLRR 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCISSIFLLM 353
             VR       I  ++++ F  +W    +   + +     P+L  +   L  ++  F L+
Sbjct: 300 TGVRGSGMAMGIGQAMAVGFF-YWSTHSVAIALGRGGALAPMLAGWMANLVFLTFGFYLL 358

Query: 354 IKKKY 358
           +K +Y
Sbjct: 359 LKVRY 363


>gi|330962173|gb|EGH62433.1| hypothetical protein PMA4326_26812 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 375

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 117/366 (31%), Gaps = 29/366 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L 
Sbjct: 2   IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFMIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A L+ + +      + 
Sbjct: 62  VILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAALVGLVVAWLSFSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P+  +   QL  +      F  L    F   R    +       +  + L G+FI + R 
Sbjct: 122 PQGAAQFSQLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSDDRSQLTGVFISEKRM 181

Query: 181 TQTHKIYYAQSGSIDLDRQ---------AIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           +         +  +               +IL +G  +  +P + D  ++K+ +Y     
Sbjct: 182 SSDKSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGTALP 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               S  V        S L                   +E   R++  L   I  L++I 
Sbjct: 242 KPEISEEVTDREAIPTSELF----------GNRTARSVAELQWRISLPLSVFIVTLMAIP 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-----NPYYIPILYLFLFCI 346
                 +  ++ +   +  ++ +          +   +E+     +     +  ++L   
Sbjct: 292 L---SRVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHAIYLAIG 348

Query: 347 SSIFLL 352
             +F  
Sbjct: 349 LVLFYW 354


>gi|313200016|ref|YP_004038674.1| permease [Methylovorus sp. MP688]
 gi|312439332|gb|ADQ83438.1| permease YjgP/YjgQ family protein [Methylovorus sp. MP688]
          Length = 356

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 122/360 (33%), Gaps = 8/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+ + I  S ++  + ++ +     ++Q +  +   T  LN +L       P  
Sbjct: 1   MKLLNRYLTQEIVSSIMLIMVALLAMFSFFDLIQELESIGKGTYGLNKVLVFVLLSAPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    + T   L  ++R++EL+I+  +G S  T+ + +L + ++ ++  F     
Sbjct: 61  VYEVVPVAVLVGTMYALGQLSRHSELIILRVSGISIATIARSLLKVGLIFAVITFFVGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T ++L  +A  ++        L+ +              +  +          
Sbjct: 121 VTPYSEKTAQRLRIQATDSVVAQDFRSGLWVKDGRSFVNVEEVMPDSGLMNIHIYEFDDS 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                I  A++G    D +   L D +       +          +         + +++
Sbjct: 181 FHLRTISDAKTGRF--DGENWHLKDVQQTHFLDKTVKSEFFPQAQWQSLIRPELLNVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L     ++ +   +    +      ++   L  ++  ++++         R
Sbjct: 239 VPEKMSAWNLYF-YIHHLSANKQKTSRHEIALWSKMVYPLASLVMVVLALPFGFL--QQR 295

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMIKKK 357
                  IF  + +           +H    N   P    ++   LF ++ + +L + ++
Sbjct: 296 SGGASAKIFAGIMLGIVYQVLNRVFVHLGLLNDWSPLMSAVVPTLLFLLAGLTMLFMAER 355


>gi|70728449|ref|YP_258198.1| YjgP/YjgQ family permease [Pseudomonas fluorescens Pf-5]
 gi|68342748|gb|AAY90354.1| permease, YjgP/YjgQ family [Pseudomonas fluorescens Pf-5]
          Length = 372

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/351 (14%), Positives = 120/351 (34%), Gaps = 23/351 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R I  +       ++ I    + ++ +   +S       L  I G+ +P  L 
Sbjct: 2   IVFRYLSREILLTLSAVSAVLLVIIMSGRFVKFLAQAASGALDPGSLFLIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A L+++ +      + 
Sbjct: 62  LILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMIPAALVALLVAWLSLSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P+  +  + L  K      F  L    F        +            L G+FI + R 
Sbjct: 122 PQGANQFQLLLNKQDALTEFDTLVAGRFQALNDGTRVTYTEQLSEDRTNLGGVFISEKRL 181

Query: 181 TQTHKI-----YYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
            Q  K        A+ G         + +IL +G  +  +P   +  ++K+ +Y +  E 
Sbjct: 182 GQQKKDEGISVLVAEKGHQDIRPDGNRYLILENGYRYDGNPGEANYRVIKYDTYGVLLER 241

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            + S  V   +    + L+           +     R+E   RL+  L   I  L+++  
Sbjct: 242 PDVSDEVTDRDAMPTADLI----------GKDDLRARAELQWRLSLPLLVFIVTLMAVPL 291

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
                +  ++ +   +  ++ +          +   +E+      +   ++
Sbjct: 292 ---SRVNPRQGRFLKLIPAILLYMAYLTILIAVRGALEKGKISPALGLWWV 339


>gi|28868483|ref|NP_791102.1| hypothetical protein PSPTO_1272 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|301384649|ref|ZP_07233067.1| hypothetical protein PsyrptM_18512 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058898|ref|ZP_07250439.1| hypothetical protein PsyrptK_02842 [Pseudomonas syringae pv. tomato
           K40]
 gi|302133011|ref|ZP_07259001.1| hypothetical protein PsyrptN_16554 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28851721|gb|AAO54797.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|330963184|gb|EGH63444.1| hypothetical protein PSYAC_00750 [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331015232|gb|EGH95288.1| hypothetical protein PLA106_04717 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 375

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/366 (12%), Positives = 116/366 (31%), Gaps = 26/366 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L 
Sbjct: 2   IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A L+ + +      + 
Sbjct: 62  VILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAALVGLLVAWLSFSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P+  +   QL  +      F  L    F   R    +          + L G+FI + R 
Sbjct: 122 PQGAAQFSQLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKRM 181

Query: 181 TQTHKIYYAQSGSIDLDRQ---------AIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           +         +  +               +IL +G  +  +P + D  ++K+ +Y     
Sbjct: 182 SNDKSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVVKYDTYGAALP 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               S  +        S L                   +E   R++  L   I  L++I 
Sbjct: 242 KPEISEEITDREAIPTSELF----------GNPAPRSVAELQWRISLPLSVFIVTLMAIP 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSI 349
                 +  ++ +   +  ++ +          +   +   + P  + + ++    +   
Sbjct: 292 L---SRVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHGIYLGIG 348

Query: 350 FLLMIK 355
            +L   
Sbjct: 349 LVLFYW 354


>gi|22124661|ref|NP_668084.1| hypothetical protein y0748 [Yersinia pestis KIM 10]
 gi|45440497|ref|NP_992036.1| hypothetical protein YP_0645 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51594885|ref|YP_069076.1| membrane protein, permease [Yersinia pseudotuberculosis IP 32953]
 gi|108808931|ref|YP_652847.1| hypothetical protein YPA_2940 [Yersinia pestis Antiqua]
 gi|108810814|ref|YP_646581.1| hypothetical protein YPN_0649 [Yersinia pestis Nepal516]
 gi|145600503|ref|YP_001164579.1| hypothetical protein YPDSF_3249 [Yersinia pestis Pestoides F]
 gi|153949000|ref|YP_001402495.1| permease [Yersinia pseudotuberculosis IP 31758]
 gi|153997519|ref|ZP_02022619.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|162420587|ref|YP_001608340.1| hypothetical protein YpAngola_A4049 [Yersinia pestis Angola]
 gi|165925751|ref|ZP_02221583.1| putative permease [Yersinia pestis biovar Orientalis str. F1991016]
 gi|166010149|ref|ZP_02231047.1| putative permease [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166214265|ref|ZP_02240300.1| putative permease [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167399516|ref|ZP_02305040.1| putative permease [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167423672|ref|ZP_02315425.1| putative permease [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170025892|ref|YP_001722397.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186893895|ref|YP_001871007.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|218930455|ref|YP_002348330.1| hypothetical protein YPO3439 [Yersinia pestis CO92]
 gi|229839083|ref|ZP_04459242.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229896571|ref|ZP_04511738.1| conserved inner membrane protein [Yersinia pestis Pestoides A]
 gi|229899646|ref|ZP_04514787.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901017|ref|ZP_04516141.1| conserved inner membrane protein [Yersinia pestis Nepal516]
 gi|270489197|ref|ZP_06206271.1| inner membrane family protein [Yersinia pestis KIM D27]
 gi|294505143|ref|YP_003569205.1| hypothetical protein YPZ3_3034 [Yersinia pestis Z176003]
 gi|21957470|gb|AAM84335.1|AE013676_8 hypothetical protein y0748 [Yersinia pestis KIM 10]
 gi|45435354|gb|AAS60913.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51588167|emb|CAH19773.1| putative membrane protein, permease [Yersinia pseudotuberculosis IP
           32953]
 gi|108774462|gb|ABG16981.1| membrane protein [Yersinia pestis Nepal516]
 gi|108780844|gb|ABG14902.1| putative membrane protein [Yersinia pestis Antiqua]
 gi|115349066|emb|CAL22028.1| putative membrane protein [Yersinia pestis CO92]
 gi|145212199|gb|ABP41606.1| membrane protein [Yersinia pestis Pestoides F]
 gi|149289156|gb|EDM39236.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|152960495|gb|ABS47956.1| putative permease [Yersinia pseudotuberculosis IP 31758]
 gi|162353402|gb|ABX87350.1| putative permease [Yersinia pestis Angola]
 gi|165922363|gb|EDR39540.1| putative permease [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165991056|gb|EDR43357.1| putative permease [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204497|gb|EDR48977.1| putative permease [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167052020|gb|EDR63428.1| putative permease [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057842|gb|EDR67588.1| putative permease [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752426|gb|ACA69944.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186696921|gb|ACC87550.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682356|gb|EEO78448.1| conserved inner membrane protein [Yersinia pestis Nepal516]
 gi|229687138|gb|EEO79213.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695449|gb|EEO85496.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700349|gb|EEO88381.1| conserved inner membrane protein [Yersinia pestis Pestoides A]
 gi|262363204|gb|ACY59925.1| hypothetical protein YPD4_3021 [Yersinia pestis D106004]
 gi|270337701|gb|EFA48478.1| inner membrane family protein [Yersinia pestis KIM D27]
 gi|294355602|gb|ADE65943.1| hypothetical protein YPZ3_3034 [Yersinia pestis Z176003]
          Length = 358

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 116/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I  + LM+ L +V ++ +I+ + ++  V     S       +   IP  + +
Sbjct: 5   LDRYIGRTILNTILMTLLMLVSLSGIIKFVDQLRKVGQGDYSAASAGMYTILSIPKDIAV 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGTLASRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +   T +    +     +    +  L+ +   D          +           ++ + 
Sbjct: 125 QGEQTARNFRTQQMYGGSLLSTQSGLWAKDGSDFIYIQRVSGESELTGVNIYHFDKEDRL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA + + + D +   L+  +     +P     S      +           + +  
Sbjct: 185 LSVRYAATATYEKDNKTWRLSQVDESDLSNPTQVTGSQTLTGEWKTNLTPEKLGVVAMDP 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L +          +    Y      ++       +  L+++            
Sbjct: 245 DSLSISGL-HDYSKYLQQSGQESNRYELSMWSKVFAPFSVAVMMLMALSFIFGPLRSVPM 303

Query: 303 KKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  I     F V    F  +       P    +L   LF + SI LL+ ++
Sbjct: 304 GVRVVTGIFFGFVFYVLDQVFGRLSLVYGIPPMLGALLPSMLFLLISICLLLKRR 358


>gi|253997950|ref|YP_003050013.1| permease [Methylovorus sp. SIP3-4]
 gi|253984629|gb|ACT49486.1| permease YjgP/YjgQ family protein [Methylovorus sp. SIP3-4]
          Length = 356

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 122/360 (33%), Gaps = 8/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+ + I  S ++  + ++ +     ++Q +  +   T  LN +L       P  
Sbjct: 1   MKLLNRYLTQEIVSSIMLIMVALLAMFSFFDLIQELESIGKGTYGLNKVLMFVLLSAPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    + T   L  ++R++EL+I+  +G S  T+ + +L + ++ ++  F     
Sbjct: 61  VYEVVPVAVLVGTMYALGQLSRHSELIILRVSGISIATIARSLLKVGLIFAVITFFVGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T ++L  +A  ++        L+ +              +  +          
Sbjct: 121 VTPYSEKTAQRLRIQATDSVVAQDFRSGLWVKDGRSFVNVEEVMPDSELMNIHIYEFDDT 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                I  A++G    D +   L D +       +          +         + +++
Sbjct: 181 FHLRTISDAKTGRF--DGENWHLKDVQQTHFLDKTVKSEFFPQAQWQSLIRPELLNVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L     ++ +   +    +      ++   L  ++  ++++         R
Sbjct: 239 VPEKMSAWNLYF-YIHHLSANKQKTSRHEIALWSKMVYPLASLVMVVLALPFGFL--QQR 295

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMIKKK 357
                  IF  + +           +H    N   P    ++   LF ++ + +L + ++
Sbjct: 296 SGGASAKIFAGIMLGIVYQVLNRVFVHLGLLNDWSPLMSAVVPTLLFLLAGLTMLFMAER 355


>gi|330873094|gb|EGH07243.1| hypothetical protein PSYMP_02391 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 375

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/366 (12%), Positives = 117/366 (31%), Gaps = 26/366 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L 
Sbjct: 2   IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A+L+ + +      + 
Sbjct: 62  VILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAVLVGLLVAWLSFSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P+  +   QL  +      F  L    F   R    +          + L G+FI + R 
Sbjct: 122 PQGAAQFSQLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKRM 181

Query: 181 TQTHKIYYAQSGSIDLDRQ---------AIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           +         +  +               +IL +G  +  +P + D  ++K+ +Y     
Sbjct: 182 SNDKSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVVKYDTYGAALP 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               S  +        S L                   +E   R++  L   I  L++I 
Sbjct: 242 KPEISEEITDREAIPTSELF----------GNPAPRSVAELQWRISLPLSVFIVTLMAIP 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSI 349
                 +  ++ +   +  ++ +          +   +   + P  + + ++    +   
Sbjct: 292 L---SRVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHGIYLGIG 348

Query: 350 FLLMIK 355
            +L   
Sbjct: 349 LVLFYW 354


>gi|123440875|ref|YP_001004866.1| hypothetical protein YE0502 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087836|emb|CAL10622.1| putative membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 356

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 112/354 (31%), Gaps = 2/354 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I  + LM+   +V ++ +I+ + ++  V     S       +   IP  + +
Sbjct: 5   LDRYIGRTILNTILMTLFMLVSLSGIIKFVDQLRKVGQGDYSAASAGMYTLLSIPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +    + +     Q+        ++  +  D   +I I + + +  L G+ I        
Sbjct: 125 QG-EQMARNFRAQQMYGGSLLSTQSGLWAKDGSDFIYIQRVSGDKELTGVNIYHFDQQDR 183

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
                  + +   D    +    E    +P     S      +           + +  +
Sbjct: 184 LLSVRYAATATFEDNLWRLSQVDESDLSNPNKVTGSQTLTGEWKTNLTPEKLGVVAMNPD 243

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++S L +          +    Y      ++       +  L+++             
Sbjct: 244 SLSISGL-HDYSKYLRQSGQESSRYELNMWGKIFAPFSVAVMMLMALSFIFGPLRSVPMG 302

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I     F V       +  +   P  I  L   +  +     L++K++
Sbjct: 303 VRVVTGIFFGFVFYVLDQIFGPLSLVYSIPPVIGALLPSILFLLISVYLLLKRR 356


>gi|56461046|ref|YP_156327.1| permease [Idiomarina loihiensis L2TR]
 gi|56180056|gb|AAV82778.1| Predicted permease [Idiomarina loihiensis L2TR]
          Length = 356

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 117/355 (32%), Gaps = 3/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI   + R+ L+S   +  ++ +I+ ++++  V     ++        Y +P  +
Sbjct: 3   SILDKYIGLSVLRTSLLSLAVLTGLSSLIRFVEQLKAVGRGDYNVMDAALFVFYSLPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     +  +  N+EL+++   G SR+ +I  V+  AI++ + +      I
Sbjct: 63  ETFFPMAALLGGLIGVGMLASNSELVVMMAAGRSRLNIIGAVMKSAIIMMVAVMAIGEWI 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   +  + + ++A    +    ++ ++ +   D    I +      L  + I D  D 
Sbjct: 123 APPMEAQGRAIRSQAISGGSLISAQQGVWAKDGSDFIN-IGEVEDTGRLNDVLIYDFNDN 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +  +       + +       +    V +   I           +           + +K
Sbjct: 182 RELQKVTYAR-TANFSGDKWRMQQVTVTQLDDIRMLRDEKPSMVWQSSLTPDKLGVVTIK 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               +++ LL+          +  E Y     ++L   +   +  L+++           
Sbjct: 241 PESLSITGLLD-YLTYLESNQQSAERYELALWRKLFAPITVAVMLLVALSFIFGPLRSTT 299

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                 + +     F V       + ++ Q P  +  L   +         M  +
Sbjct: 300 MGARILLGVITGFGFHVSNEIFGPLAQVYQIPAILGALLPSILFAGVAVYFMRGR 354


>gi|192359904|ref|YP_001981938.1| putative permease, YjgP/YjgQ family superfamily [Cellvibrio
           japonicus Ueda107]
 gi|190686069|gb|ACE83747.1| putative permease, YjgP/YjgQ family superfamily [Cellvibrio
           japonicus Ueda107]
          Length = 366

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 137/366 (37%), Gaps = 21/366 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  + L     +  I    +    ++  +    ++++L  I  Y +  +L 
Sbjct: 2   IIFRYLSRDLLLTSLAVSAVLFTIFLTGKFSDYLDDAAQGKLAVDVLFTIIAYRMTGLLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        M  ++E++++   G S   L+   L  + L++  + +    + 
Sbjct: 62  LILPLGFYLAILLAYGRMYMDSEMVVLSACGISPGQLVGMTLVPSALIAAIVALFSFWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL--QGIFIVDSRD 180
           P      +Q  A+ +    F  ++   F  L     +   +   ++    Q +F+     
Sbjct: 122 PLGAQLTEQTLAEQRNRSEFESMQPGRFQSLGQGKIMAYVESLSDDNRLLQHVFVAHQEG 181

Query: 181 TQTHKIYYAQSGSID----LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANS 235
             +  I  A++G+        ++ ++LN G  ++  P + + +I +F+ +        + 
Sbjct: 182 PDSSAIVVAETGTQMYRPDYGQRYLVLNQGYRYQGKPGTNEFTITRFEDWGRYLPPTTSV 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           + I LK++ +  + L     N             +    R++  +  +I  L+++     
Sbjct: 242 AEIELKSDAKTTAQLFRAEDNES----------IATLQWRISMPIMVLIATLLAVP--LS 289

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           +   RQ + +  +   L   F + +  +      + N      +++       I LLMI 
Sbjct: 290 KTNPRQGRYLKMLPAILVYVFYLTFLINARSAITKGNLNPALGMWVVHLPFLVIALLMIN 349

Query: 356 KKYTKI 361
             + ++
Sbjct: 350 --WHRL 353


>gi|327481779|gb|AEA85089.1| permease [Pseudomonas stutzeri DSM 4166]
          Length = 373

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/366 (12%), Positives = 125/366 (34%), Gaps = 26/366 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   +       +LL I G+ +P  L 
Sbjct: 2   IVFRYLSRELLITMSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLLLIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   L  A L++  +      + 
Sbjct: 62  LILPLGLFLGILLAYGRLYLESEMTVLSATGMSQRRLLAYSLAPAALVAALVGWLSLGLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P+  + + ++  +      F  L    F   R    +          + L G+FI ++  
Sbjct: 122 PQGIAEVDRILNQQDSLTEFDTLVPGRFQTLRGGSRVTYTRELSADRSELGGVFISETNV 181

Query: 181 TQTH---------KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           ++                +        + +IL +G  +  +P   D   +++ +Y +   
Sbjct: 182 SRQTGKESGLSVLVAESGRQEIQPDGSRYLILENGYRYDGNPGQADYRAIQYDTYGVLLP 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               S  + +        LL                +R+E H RL+  L   +  ++++ 
Sbjct: 242 KPEVSMELSEREAMPTRELL----------GSDNLRHRTELHWRLSLPLLVFVVTVLAVP 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSI 349
            A    +  ++ +   +  ++ +          +   +   + P  + + ++    ++  
Sbjct: 292 LA---KVNPRQGRFLKLLPAILLYMTYLALLIAVRGALDKGRLPMALGLWWVHGLFLAIG 348

Query: 350 FLLMIK 355
            L++  
Sbjct: 349 LLMLFW 354


>gi|86607080|ref|YP_475843.1| YjgP/YjgQ family protein [Synechococcus sp. JA-3-3Ab]
 gi|86555622|gb|ABD00580.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
           JA-3-3Ab]
          Length = 392

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 124/364 (34%), Gaps = 12/364 (3%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            E Y+ + + R F +       +    Q+    +L+         +L I    +P +L +
Sbjct: 31  LEFYLCKEMIRPFFLGVAGGTVMMLGNQLFIYADLLVKKGAPPLTILHILLLNLPAILVV 90

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P      T   L  M  ++E+  +   G     ++ PVL + +L+S    ++  +I P
Sbjct: 91  TFPIAGLFATLLTLGRMGADSEITALRAAGIPYRKVLIPVLCIGLLVSGLALLTNEVIVP 150

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +    +K L+    LA      +     R+DDDL+  +   +P        ++  R  +T
Sbjct: 151 ETNQKVKTLNTNLILAQDALPFDSEEIVRVDDDLWFHVGSIDPKTGWMRDLLILDRKAET 210

Query: 184 HKIYYAQ---SGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + Y Q   + +     QA  L D  + R     +     +     L   +     +  
Sbjct: 211 GHLRYPQVISAQTAHQVGQAWHLQDVVIRRYDERGRTYYEGQVAEMELNIVNKLVGLVYA 270

Query: 241 K--ANDQNLSFLLNPNPNNPNYRPELLE--TYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +    +Q  + L          +    +     +E+H +    L      L++       
Sbjct: 271 EKVPQEQRAAELWEQCQRYRAEQRPSADVARCLTEYHLKFAIPLASFFAILVAAPLGL-- 328

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFS---YIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             VRQ  +   + +++ + F  +   S    +      +P+    L   +F      LL 
Sbjct: 329 QTVRQTGRYGSVALAIVLVFIYYVLMSLGRAMGRVEHIDPWLAAWLPNMIFGGVGFSLLW 388

Query: 354 IKKK 357
              +
Sbjct: 389 RFLR 392


>gi|254242519|ref|ZP_04935841.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126195897|gb|EAZ59960.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 372

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 125/365 (34%), Gaps = 25/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   +        L  I  + IP  L 
Sbjct: 2   IVFRYLSREVLVTMSAVSAVLLVIIMSGRFIKYLAQAAQGLLDPGSLFLIMAFRIPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A+L++I +      + 
Sbjct: 62  LILPLGLFLGILLAYGRLYLESEMTVLSATGMSQKRLLGYTMAPALLVAILVAWLSLFLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+  +    L  K      F  L    F  + D   +  ++    +  +   I  S+   
Sbjct: 122 PQGINQFALLLNKQDTLTEFDTLVPGRFQAMRDGTRVTYTEELSKDRGELAGIFISQKDL 181

Query: 183 THKIYYAQSGSIDLDR----------QAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
                      +  ++          + +IL++G  +  +P   +   +++ +Y +    
Sbjct: 182 NSSNQERGISILVAEKGTQNIQADGSRYLILHNGYRYDGNPGQANYRAIQYDTYGVMLPK 241

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
             +S+ V + +    + L                 Y++E   RL+  L   +  L+++  
Sbjct: 242 PEASSEVSERDAVPTADLF----------GSDNPRYQAELQWRLSTPLLVFVVTLLAV-- 289

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIF 350
                +  ++ +   +  ++ +  G       +  ++   + P  I + ++    ++   
Sbjct: 290 -PLSRVNPRQGRFLKLLPAILLYMGYLALLIAVRGQLDKGKIPMAIGLWWVHGLFLAIGL 348

Query: 351 LLMIK 355
           LL   
Sbjct: 349 LLFYW 353


>gi|220906932|ref|YP_002482243.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7425]
 gi|219863543|gb|ACL43882.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7425]
          Length = 374

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 131/366 (35%), Gaps = 15/366 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTVL 61
             + YIL  +   FL        +A  I ++   +  ++ +  +L + L+I G  +P  +
Sbjct: 9   IIDRYILAEMAMPFLFGVAVFTLLAATIGVVFDLLRWLADNRLTLAVALQILGLRLPEFI 68

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +    V  ++ R +EL+ +   G S   L  P+L +  LL+   F     I
Sbjct: 69  ILALPMSMLLTPLLVFNTLGRRSELVALQGCGVSVYRLALPILLVGFLLAGLTFGLNETI 128

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY---IKISKYNPNNTLQGIFIVDS 178
            P+      Q+   A       + E+N+F+R   D     I  ++      +Q I I++ 
Sbjct: 129 APQTNYQALQIQTAALRRPQQKFREKNIFYREFVDNTLSRIFYARQFDGQQMQRITILNF 188

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              +  +I  A +   D  ++      G V+  +P ++  S    + + +      S+ +
Sbjct: 189 DQGKLDQIIVANAAEWDQKQKHWDFQQGTVYSLTPNTESSSYTSIQPFQVTQLPLPSTPL 248

Query: 239 VLKANDQNLSFLLNPNPNNPNY------RPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            L    + +  +                  + +  ++    ++       V+FGLI    
Sbjct: 249 QLATETRKIEQMNRWEATQFLRAIEQTGDQKWIRRWKVGIQEKNAFPFTCVVFGLIGAAL 308

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIF 350
                   + +      +SL++ F  ++  +     + +     P+L  +          
Sbjct: 309 GLSS--YNRSQTSRGFGLSLAMIFA-YYLLNSTCISLGEGGLLSPLLAAWLSPLVGLLTG 365

Query: 351 LLMIKK 356
             ++ +
Sbjct: 366 GWLLFR 371


>gi|260914417|ref|ZP_05920886.1| YjgP/YjgQ family membrane protein [Pasteurella dagmatis ATCC 43325]
 gi|260631518|gb|EEX49700.1| YjgP/YjgQ family membrane protein [Pasteurella dagmatis ATCC 43325]
          Length = 358

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 118/357 (33%), Gaps = 3/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + Y+ + I  +   + + +V ++ +I+ +++  LV   T  +   +  +   +P  
Sbjct: 4   MNTLDRYLGKSILGAIFATLIMLVGLSGIIKFVEQFRLVGKGTYDIWQAIAYTVLTMPKD 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L ++   +EL+++  +G SR+ +   V+  AI L I        
Sbjct: 64  VETFFPMAALLGSLIALGNLASRSELIVMQASGFSRLKIGLAVMKTAIPLVIITMAIGEW 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+      +      +         + F+  +   +I + +   +  L  I+I    +
Sbjct: 124 GIPQT-EQFARDMRSKAMTGGSLLSVRDGFWAKEGSDFIYVKRITDDLELNDIYIYSFGE 182

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  K       ++  +    +L+       +P            +       N     L
Sbjct: 183 NRQLKQVKHADSAVYEEG-KWVLHQLNESEITPDEIKTVNRLNSEWKTSLTPDNLGIASL 241

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    ++S L N          +  + +   + ++L Q +   +  ++++          
Sbjct: 242 RPTSLSISGLSN-YIAFLKDTGQESKKFELTYWRKLFQPISVGVMMMLALSFIFGPLRSV 300

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    I     F V       +  +         L   +  +   + L+ +K+
Sbjct: 301 TAGARIVTGIFFGFLFYVVNEIFGPLSLVYNVAPLAGALMPSVMFLLITWWLLSRKR 357


>gi|162146455|ref|YP_001600914.1| hypothetical protein GDI_0631 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209543542|ref|YP_002275771.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785030|emb|CAP54574.1| putative membrane protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531219|gb|ACI51156.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 357

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 116/357 (32%), Gaps = 2/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F+ YI     R+FL+  L +  +  +++ + ++  V      L      +  L P  
Sbjct: 1   MKRFDRYIQMVTLRAFLLVALGLTALFSLLEFVDQLAFVGQGHYRLADAAAYTALLGPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              VTP    +     L  + +++EL  +   G S   +I  VL L + + + LF+    
Sbjct: 61  FMQVTPIAMLLACLLGLGGLAKHSELTALQGIGLSEARIISAVLRLVVPIVMVLFLLAQF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R   ++  A A  + T    ++  F+   D  Y+ + ++        I I     
Sbjct: 121 VVPGTRQMAQEGRAAALASATQKDDQDQAFWAHGDQQYLSVRRFPSETQADDIDIYRFAA 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             +   Y   + +         L D             S +   ++     S     + L
Sbjct: 181 DGSMTSYLHAARAQIGADDVWTLRDVTRKDIVADQFHTSQLDSMAWHAFLSSRQIRFLSL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                    L      +          Y  E   R++     +     +          +
Sbjct: 241 PPESVPPIALYR-YIQDLKRHHLPAMRYEQELWARISMPFAMIALIACAAPFVFGPPRSQ 299

Query: 301 QRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  I ++++I F +     S +    + NP    +    L  +S+ ++ +  +
Sbjct: 300 NVGYRMAIGVAIAIVFSLGQEITSRLGLLFDLNPALTALTPSVLLMMSAAYVFIHTR 356


>gi|225075101|ref|ZP_03718300.1| hypothetical protein NEIFLAOT_00100 [Neisseria flavescens
           NRL30031/H210]
 gi|224953585|gb|EEG34794.1| hypothetical protein NEIFLAOT_00100 [Neisseria flavescens
           NRL30031/H210]
          Length = 356

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 120/354 (33%), Gaps = 8/354 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +I+  +  +   + +   + +     +P  
Sbjct: 1   MDLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGKGSYNGTTMAQYVLMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   ++  +    ++ +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKILLILSQFGLIFAIATATLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      + + A A      +       +  + +  I + +  P++TL GI I    D
Sbjct: 121 IAPVLSQKAENIKAAAINGKISTGN--TGLWLKEKNSIINVREMLPDHTLLGIKIWARND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++  +  +  L +      S    ++S    +++ +  +      +++
Sbjct: 179 KNELTQATEAESAVLNNDGSWQLKNIRRSTLSEDKVEVSTAAEENWPIAVKRNLMDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L     ++     +  + Y   + ++L   +   +  L++          R
Sbjct: 239 KPDQMSVGELT-TYISHLENNNQNTQIYAIAWWRKLVYPVAAWVMALVAFAF--TPQTTR 295

Query: 301 QRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                  +F  + +     +    F +        P+    L   LF + +++L
Sbjct: 296 HGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVLPFLAGALPTVLFALLAVYL 349


>gi|297569343|ref|YP_003690687.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925258|gb|ADH86068.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 398

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 117/352 (33%), Gaps = 11/352 (3%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFA 70
            +   F  + L I  I ++ +++  ++ + +    L    +I  Y+ P +L    P    
Sbjct: 15  EMLAPFFAALLVINAILFLGRLIPLLDEIFALGLGLGDFARICLYMSPRLLLFSLPMACM 74

Query: 71  METTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIK 130
           M      T MN + E++ +  +G     ++ PVL L  + ++   ++  ++ PK      
Sbjct: 75  MGVIIAFTRMNGDYEIMALKASGIGLYRMLPPVLLLGAVTALLTLVTATVLIPKSTIATN 134

Query: 131 QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQ 190
           QL            +  N F      + + + +  P+N  +G+++ D RD        A 
Sbjct: 135 QLFWHLAKTKVEQGVRPNTFSEGLPQVVLYVEEVTPDNAWRGVYLSDLRDPDHPVTVMAP 194

Query: 191 SGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
            G +  D    R  + L+DG +HR                 +      +       +   
Sbjct: 195 DGQLQADTAGSRIMLTLHDGTMHRAVQEKTQTIHFGRYHLEIPLTPPAAFADRTGRHGMT 254

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
              L               +TY  E+H+RL       I  ++ I          Q     
Sbjct: 255 QDEL-RQTAAKLGPEHSRYKTYLIEYHQRLVLPAGAFILAMLGITLTLLSRTPHQ----A 309

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYI--PILYLFLFCISSIFLLMIKK 356
                  +SF  ++        + +       P ++L     +   + + +K
Sbjct: 310 LGVPLGLLSFIAYYVLLTAAKTLAEGGQLPLGPAMWLPNLVFAIFTVYLTRK 361


>gi|332160138|ref|YP_004296715.1| hypothetical protein YE105_C0514 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607296|emb|CBY28794.1| putative Permease [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664368|gb|ADZ41012.1| hypothetical protein YE105_C0514 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859698|emb|CBX70034.1| lipopolysaccharide export system permease protein lptG [Yersinia
           enterocolitica W22703]
          Length = 356

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 112/354 (31%), Gaps = 2/354 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I  + LM+   +V ++ +I+ + ++  V     S       +   IP  + +
Sbjct: 5   LDRYIGRTILNTILMTLFMLVSLSGIIKFVDQLRKVGQGDYSAASAGMYTLLSIPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +    + +     Q+        ++  +  D   +I I + + +  L G+ I        
Sbjct: 125 QG-EQMARNFRAQQMYGGSLLSTQSGLWAKDGSDFIYIQRVSGDKELTGVNIYHFDKQDR 183

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
                  + +   D    +    E    +P     S      +           + +  +
Sbjct: 184 LLSVRYAATATFEDNLWRLSQVDESDLSNPNKVTGSQTLTGEWKTNLTPEKLGVVAMNPD 243

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++S L +          +    Y      ++       +  L+++             
Sbjct: 244 SLSISGL-HDYSKYLRQSGQESSRYELNMWGKIFAPFSVAVMMLMALSFIFGPLRSVPMG 302

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I     F V       +  +   P  I  L   +  +     L++K++
Sbjct: 303 VRVVTGIFFGFVFYVLDQIFGPLSLVYNIPPVIGALLPSILFLLISVYLLLKRR 356


>gi|15599023|ref|NP_252517.1| hypothetical protein PA3828 [Pseudomonas aeruginosa PAO1]
 gi|116051856|ref|YP_789301.1| hypothetical protein PA14_14500 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889888|ref|YP_002438752.1| putative permease [Pseudomonas aeruginosa LESB58]
 gi|254236732|ref|ZP_04930055.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|296387656|ref|ZP_06877131.1| putative permease [Pseudomonas aeruginosa PAb1]
 gi|313109247|ref|ZP_07795215.1| hypothetical protein PA39016_001710056 [Pseudomonas aeruginosa
           39016]
 gi|9950003|gb|AAG07215.1|AE004800_4 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115587077|gb|ABJ13092.1| putative permease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168663|gb|EAZ54174.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218770111|emb|CAW25873.1| putative permease [Pseudomonas aeruginosa LESB58]
 gi|310881717|gb|EFQ40311.1| hypothetical protein PA39016_001710056 [Pseudomonas aeruginosa
           39016]
          Length = 372

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 125/365 (34%), Gaps = 25/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   +        L  I  + IP  L 
Sbjct: 2   IVFRYLSREVLVTMSAVSAVLLVIIMSGRFIKYLAQAAQGLLDPGSLFLIMAFRIPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A+L++I +      + 
Sbjct: 62  LILPLGLFLGILLAYGRLYLESEMTVLSATGMSQKRLLGYTMAPALLVAILVAWLSLFLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+  +    L  K      F  L    F  + D   +  ++    +  +   I  S+   
Sbjct: 122 PQGINQFALLLNKQDTLTEFDTLVPGRFQAMRDGTRVTYTEELSKDRGELAGIFISQKDL 181

Query: 183 THKIYYAQSGSIDLDR----------QAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
                      +  ++          + +IL++G  +  +P   +   +++ +Y +    
Sbjct: 182 NSSNQERGISILVAEKGTQNIQADGSRYLILHNGYRYDGNPGQANYRAIQYDTYGVMLPK 241

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
             +S+ V + +    + L                 Y++E   RL+  L   +  L+++  
Sbjct: 242 PEASSEVSERDAVPTADLF----------GSDNPRYQAELQWRLSTPLLVFVVTLLAV-- 289

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIF 350
                +  ++ +   +  ++ +  G       +  ++   + P  I + ++    ++   
Sbjct: 290 -PLSRVNPRQGRFLKLLPAILLYMGYLALLIAVRGQLDKGKIPMAIGLWWVHGLFLAIGL 348

Query: 351 LLMIK 355
           LL   
Sbjct: 349 LLFYW 353


>gi|172036942|ref|YP_001803443.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
 gi|171698396|gb|ACB51377.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
          Length = 394

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 128/362 (35%), Gaps = 20/362 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + Y+   +   FL        +   +  +   +  V+ S   L++ +KI    +P 
Sbjct: 20  LSIMDRYLFIELLLPFLFGMGIFTSLGLSIGTLFDLVRRVTESGLMLSVAMKILVLKMPG 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    +      + ++ ++E++ + + G S   LI PV+   ++++   FI  +
Sbjct: 80  FVSLAFPMAMLLAALMAYSRLSSDSEIIALRSLGVSVYRLIIPVILFGLVVTGCAFIVND 139

Query: 120 IIEPKCRSTIKQLSAKAQL------------ALTFSYLEENLFFRLDDDLYIKISKYNPN 167
            I P           +A                 +  ++E    ++     +  ++    
Sbjct: 140 WIAPAATHEAAVTLQRAVNQERPDFKERNIVYPEYKTVQEEDGQQVTVLTRLFYAEEYNG 199

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
           + +QG+ I+D      ++I  ++S + ++        +G ++  +P     +I++F+   
Sbjct: 200 DKMQGLTILDRTQEGVNQIVTSESATWNISSNTWDFFNGTIYLIAPDGSYRNIVRFQHQQ 259

Query: 228 LQTE--SANSSTIVLKANDQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFPVI 284
           L       + +       +  ++           +   + +   +    ++       +I
Sbjct: 260 LALPRAPLDLANRRQNFTEMTIAQTQEYLKAMQLSGNEKRVRKVKVRLQEKYAMPFVCLI 319

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           FG++      +        K     + + + FG ++  +++   +       P L  +L 
Sbjct: 320 FGVVGAAIGVRPQNT---NKATSFGVCVGLIFG-YYLLAFMSTSLGIWGVLTPFLGAWLP 375

Query: 345 CI 346
            I
Sbjct: 376 NI 377


>gi|289523522|ref|ZP_06440376.1| membrane protein, YjgP/YjgQ family [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503214|gb|EFD24378.1| membrane protein, YjgP/YjgQ family [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 369

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 120/356 (33%), Gaps = 13/356 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTV 60
           +  + +I+     +F+   +    +     +L    +L+  S    +I++++  Y +P V
Sbjct: 9   RLLDKFIITEFYPTFVFGVMVFTVLLVAGDLLFDIADLLIQSRVPFSIVIRLFVYRLPGV 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T      +   +EL  +  +G S   +++PV   +IL+  F  +    
Sbjct: 69  IVLTLPMAALLATILSFGKLATQSELTALRASGISFYRILRPVFLASILIGGFALLLNET 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQGIFIV 176
           + P        +          S L+E +F + + D      I I K  P        ++
Sbjct: 129 LVPLADRAADNIMRYEVARQKPSLLKEQMFLKEERDGALSRVIYIGKLFPQEGNMDDVLI 188

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              ++               + Q   L +G+V   +       +  F+   L    + S 
Sbjct: 189 QEFESGEITRILTAKNGDWKEGQWW-LYNGQVFNVTKEGFVEPLFSFEKQQLSLPLSPSQ 247

Query: 237 --TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
             T        +   L N      N +   + +     H RL      V+  L+      
Sbjct: 248 VVTSSQDPKKMSAFELYN-YIKLMNVQGSDVNSLWVLLHLRLAVPWASVVLALVGASVGA 306

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                R+      I +S+ + F  ++ F      + Q  Y  P+L  ++  +  + 
Sbjct: 307 G---TRRSGSGMGIGVSILLVFA-YYVFMSFCRSLGQGGYIPPLLAAWMPNLIFLV 358


>gi|126658379|ref|ZP_01729528.1| hypothetical protein CY0110_27505 [Cyanothece sp. CCY0110]
 gi|126620311|gb|EAZ91031.1| hypothetical protein CY0110_27505 [Cyanothece sp. CCY0110]
          Length = 394

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/365 (11%), Positives = 128/365 (35%), Gaps = 20/365 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + Y+   +   FL        +   +  +   +  V+ S   L++ ++I    +P 
Sbjct: 20  LSIMDRYLFIELLLPFLFGMGIFTSLGLSIGTLFDLVRRVTESGLMLSVAMRILVLKMPG 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    +      + ++ ++E++ + + G S   LI PV+   ++++   FI  +
Sbjct: 80  FVSLAFPMAMLLAALMAYSRLSSDSEIIALRSLGVSVYRLIIPVILFGLVVTGCAFIVND 139

Query: 120 IIEPKCRSTIKQLSAKAQL------------ALTFSYLEENLFFRLDDDLYIKISKYNPN 167
            I P           +A                 +  ++E    +      +  ++    
Sbjct: 140 WIAPAATHEAALTLQRAVNQERPDFKERNIVYPEYKTIQEEDGQQATVLTRLFYAEEYNG 199

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
           + ++G+ I+D      ++I  ++S + ++        +G ++  +P     +I++F+   
Sbjct: 200 DKMKGLTILDRTQEGVNQIVTSESATWNISSNTWDFFNGTIYLIAPDGSYRNIVRFQHQQ 259

Query: 228 LQTE--SANSSTIVLKANDQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFPVI 284
           L       + +       +  ++           +   + +   +    ++       +I
Sbjct: 260 LALPRAPLDLANRRQNFTEMTIAQTKEYLKAMQLSGDEKRVRKVKVRLQEKYAMPFVCLI 319

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           FG++      +        K     + + + FG ++  +++   +       P L  +L 
Sbjct: 320 FGVVGAAIGVRPQNT---NKATSFGVCVGLIFG-YYLLAFMSTSLGIWGILTPFLGAWLP 375

Query: 345 CISSI 349
            I  +
Sbjct: 376 NILGL 380


>gi|86609743|ref|YP_478505.1| YjgP/YjgQ permease [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558285|gb|ABD03242.1| putative permease, YjgP/YjgQ family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 362

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 122/361 (33%), Gaps = 12/361 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+ + + R F +       +    Q+    +L+         +L I    +P +L +  P
Sbjct: 4   YLFKEMIRPFFLGVAGGTVMMLGNQLFIYTDLLVKKGAPPLTILHILLLNLPAILVVTFP 63

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
                 T   L  M  ++E+  +   G     +  PVL + +L+S    ++  +I P+  
Sbjct: 64  IAGLFTTLLTLGKMGADSEITALRAAGIPYRKVFIPVLCIGLLISGLALLTNEVIVPETN 123

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
             +K L+    LA            R+DDDL+  +   +P   L    ++  R  +T  +
Sbjct: 124 QKVKILNKNLILAQDALLFNPEEIVRVDDDLWFHVGSIDPKTGLMQDLLILDRKAETGHL 183

Query: 187 YYAQ---SGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK-- 241
            Y Q   + +     Q+  L D  + R     +     + +   L   +     +  +  
Sbjct: 184 RYPQVISAQTAQQVGQSWQLRDVVIRRYDEQGRTYYEGQVEEMQLNIVNKLVGLVYAEKV 243

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLE--TYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             +Q    L          +    +     +E+H +    L      L++         V
Sbjct: 244 PQEQRAGELWEQCQRYRAEQRPSADVARCLTEYHLKFAIPLASFFAILVAAPLGL--QTV 301

Query: 300 RQRKKIHPIFISLSISFGVFWGFS---YIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           RQ  +   + +++ + F  +   S    +      +P+    L   +F      LL    
Sbjct: 302 RQTGRYGGVALAIVLVFIYYVLMSLGRAMGRVEHIDPWLAAWLPNMIFGGVGFSLLWRFL 361

Query: 357 K 357
           +
Sbjct: 362 R 362


>gi|15599022|ref|NP_252516.1| hypothetical protein PA3827 [Pseudomonas aeruginosa PAO1]
 gi|116051855|ref|YP_789302.1| hypothetical protein PA14_14510 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889889|ref|YP_002438753.1| putative permease [Pseudomonas aeruginosa LESB58]
 gi|254236731|ref|ZP_04930054.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|296387657|ref|ZP_06877132.1| putative permease [Pseudomonas aeruginosa PAb1]
 gi|313109246|ref|ZP_07795214.1| hypothetical protein PA39016_001710055 [Pseudomonas aeruginosa
           39016]
 gi|9950002|gb|AAG07214.1|AE004800_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115587076|gb|ABJ13091.1| putative permease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168662|gb|EAZ54173.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218770112|emb|CAW25874.1| putative permease [Pseudomonas aeruginosa LESB58]
 gi|310881716|gb|EFQ40310.1| hypothetical protein PA39016_001710055 [Pseudomonas aeruginosa
           39016]
          Length = 355

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 109/355 (30%), Gaps = 2/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     I+ +A +   +  +N +S+S   +   L+      P  
Sbjct: 1   MVKLDRYIGVTVFVAILAVLGVILGLALLFAFIDELNDISAS-YGIGDALRFIFLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L ++  N+EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  AYDMLPMAALIGCLVGLGTLASNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   A AQ        +  L+ R   +     +                  
Sbjct: 120 VAPWTENIAQSGRALAQGGGDSQSSKRGLWHRQGREYIHINAVQPNGVLYGVTRYRFDEQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+    + D   +      +        ++  +  + +  Q      +T+V+
Sbjct: 180 RGLESASFAKRARFETDHWQLEEVTTTLLHPREKRSEVVKLPTERWDAQLSPQLLNTVVM 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    ++S L     +    +      Y   F  ++ Q L      L++I          
Sbjct: 240 EPEALSISGL-WQYIHYLADQGLNNNRYWLAFWTKVLQPLVTAALVLMAISFIFGPLRSV 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +     + +   F +          +   P  + ++     C  +   L+ +
Sbjct: 299 TLGQRIFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVVIPASICALAGVWLLRR 353


>gi|83644756|ref|YP_433191.1| permease [Hahella chejuensis KCTC 2396]
 gi|83632799|gb|ABC28766.1| predicted Permease [Hahella chejuensis KCTC 2396]
          Length = 365

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/367 (12%), Positives = 125/367 (34%), Gaps = 22/367 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+ R +  S L     ++ I    + ++ +   +    S ++L  I GY +P  
Sbjct: 1   MFIILRYLSRQLLVSMLAVAGVLLLIFMSGRFIKYLADAAQGKLSADVLFAIMGYRLPGF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +        M   +E+ ++   G +R  LIK  +  A+L+ + +      
Sbjct: 61  LELILPLGLFIGILLAYGRMYLESEMTVLFACGMNRFQLIKLTMVSALLVMLVVGAMSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     + ++ +       F  L    F  L     +  ++   ++  +   +  +  
Sbjct: 121 VSPWGLRQVDEIFSDQSKITEFELLAPGRFQSLRSGERVTYTEGLSSDKREMQNVFIAER 180

Query: 181 TQTHKIYYAQSGSI-------DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
                     +              + ++L++G  ++  P   D  ++++ +Y ++    
Sbjct: 181 DSESGSISVLAAKRGTQLVDPSTGSRFVVLHEGARYQGRPGEMDYRVIEYDAYGIKIAEP 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           ++     +   +  S L                  R+    R++  L   I  L++I   
Sbjct: 241 DAEAEKTRDEAKPTSELWR----------SDNPKDRALLQWRISIPLLVPIVALLAI--- 287

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ--NPYYIPILYLFLFCISSIFL 351
               +  ++ +   +  ++ I              +E+     +I + ++    ++   +
Sbjct: 288 PLSRVNPRQGRFFHLLPAMLIYITYLGLLIASRKSLEKERISEWIGMWWVHGTFLAIALV 347

Query: 352 LMIKKKY 358
           LM    +
Sbjct: 348 LMFGPDW 354


>gi|163750107|ref|ZP_02157350.1| hypothetical protein KT99_20606 [Shewanella benthica KT99]
 gi|161330164|gb|EDQ01146.1| hypothetical protein KT99_20606 [Shewanella benthica KT99]
          Length = 352

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 117/356 (32%), Gaps = 4/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  S  +  L +  ++ +I+ + ++ +V     ++        +LIP  
Sbjct: 1   MKILDLYIARTLVSSSALCLLILTGLSGIIKWVDQLRVVGRGNYTMLDAGIYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     +  +   +EL+++ + G SR  +    +  A+ L + + +    
Sbjct: 61  IEIFFPMAVLLGALIGMGMLASGSELVVMQSAGLSRFQITLSAMKTAVPLMLMIMVLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P       +L A      +       ++ +  D         N N+            
Sbjct: 121 GAPAAERRANELQAFKVSGGSLIKSSRGIWAKDGDLFVNIGEVENINSLRNITLYEFDST 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               K  +A+ G    D     L D      +     ++ +    +         S + +
Sbjct: 181 LTLVKTIHAERGVYSND--HWRLLDVRQIDLTKDKVTLTDLTLYRWDSTLTPDKLSVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++  LL    +      +    Y     +++ Q +   +  L+++          
Sbjct: 239 KPESLSIQGLL-GYLDYLEANNQNSGRYELALWRKIMQPVTVAVMMLVALSFVFGPLRSV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  + +    +F +       +  +   P ++  + +     SS+ +  I+K
Sbjct: 298 TMGARVLLGVIAGFTFYISSEIFGPLTLVYGLPAFLGAV-MPALIFSSVAIYFIRK 352


>gi|163756243|ref|ZP_02163358.1| hypothetical protein KAOT1_06887 [Kordia algicida OT-1]
 gi|161323855|gb|EDP95189.1| hypothetical protein KAOT1_06887 [Kordia algicida OT-1]
          Length = 359

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 116/359 (32%), Gaps = 2/359 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI++    +F +  L  V I  ++ I + I+ + +S    + ++      +   
Sbjct: 1   MKILDWYIIKKYLLTFSVMLLLFVPIGIMVDISENIDKMLASKAPTDEIVLYYVNFVIYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  +TE++ I ++G S +  ++P L  A +++I  F+    
Sbjct: 61  ANLLFPIFLFLSVIWFTSKLANDTEIIAILSSGVSYLRFLRPFLVAASIVAIVAFVMGMY 120

Query: 121 IEPKCRS--TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           I P         +     +         E      ++D     S    +       +   
Sbjct: 121 IVPNASKGFNEFRFEYIKKGRKKVRDNLEIYKQVTENDFIYLKSFSFDSKRGDNFTLEHF 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            D        A+S   + D     L   +      ++  +   +        E  + + +
Sbjct: 181 EDNVLEYKIQARSIKYNEDDSTYTLRGFKKRIVGAMNDSLVNQRKFDTIFPFEVDDLTPV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A   N   L              +  +    +KR +  +   I  +I++  +  +  
Sbjct: 241 TYMAETLNYQELDKFIAKEKQSGSPNVNKHLLVKYKRWSLPITAFILTIIAVAVSSMKRR 300

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 +        I       F  +  K   +P     +   +F + +++LL   ++
Sbjct: 301 GGMGFNLAFGIAIAFIYIFFDKIFGTMAEKSGFSPMLAVWVPNLVFGVLALYLLYNARR 359


>gi|165936803|ref|ZP_02225370.1| putative permease [Yersinia pestis biovar Orientalis str. IP275]
 gi|167420748|ref|ZP_02312501.1| putative permease [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|165915452|gb|EDR34062.1| putative permease [Yersinia pestis biovar Orientalis str. IP275]
 gi|166961554|gb|EDR57575.1| putative permease [Yersinia pestis biovar Orientalis str.
           MG05-1020]
          Length = 358

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 117/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I  + LM+ L +V ++ +I+ + ++  V     S       +   IP  + +
Sbjct: 5   LDRYIGRTILNTILMTLLMLVSLSGIIKFVDQLRKVGQGDYSAASAGMYTILSIPKDIAV 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGTLASRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +   T +    +     +    +  L+ +   D          +           ++ + 
Sbjct: 125 QGEQTARNFRTQQMYGGSLLSTQSGLWAKDGSDFIYIQRVSGESELTGVNIYHFDKEDRL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA + + + D +   L+  +     +P     S      +     S     + +  
Sbjct: 185 LSVRYAATATYEKDNKTWRLSQVDESDLSNPTQVTGSQTLTGEWKTNLTSEKLGVVAMDP 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L +          +    Y      ++       +  L+++            
Sbjct: 245 DSLSISGL-HDYSKYLQQSGQESNRYELSMWSKVFAPFSVAVMMLMALSFIFGPLRSVPM 303

Query: 303 KKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  I     F V    F  +       P    +L   LF + SI LL+ ++
Sbjct: 304 GVRVVTGIFFGFVFYVLDQVFGRLSLVYGIPPMLGALLPSMLFLLISICLLLKRR 358


>gi|85713126|ref|ZP_01044159.1| Predicted permease [Idiomarina baltica OS145]
 gi|85693042|gb|EAQ31007.1| Predicted permease [Idiomarina baltica OS145]
          Length = 371

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/363 (13%), Positives = 129/363 (35%), Gaps = 21/363 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++    +S +   + ++ I    + ++ ++  S      +I+ ++    +P +L 
Sbjct: 2   RIFKYLIAETLKSQIAVLVVLMTIFVSQKFVRVLSDASEGDIPSSIIFQLLSLNLPALLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +  + E+ ++   G S   + +  L +A++L++        + 
Sbjct: 62  LIIPLSLFLGILLAHGRIYADNEMTVLHACGVSEWYVTRVTLVVAVILALLTAALTMYVV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDT 181
           P      +++  KA+     + L    F +  +    I I   +    LQ +F+   +  
Sbjct: 122 PWSLEQEQKIEDKARADSGLTALIPGRFQQSSNGKAVIFIQSQDDQGDLQNVFVAQHQAE 181

Query: 182 QTHKI----YYAQSGSIDLDRQ-AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           Q          + SG ++ +   +  L   +  R +   +   +M F+ Y LQ +     
Sbjct: 182 QGRIRSGSVVVSTSGEVNTESSGSQWLELRDGKRFAGDGEHYQLMSFEQYRLQIKEQPVD 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +       ++ L     N             +E   R+   L      L++++A    
Sbjct: 242 EQLRDLEAYTVNELWQEQSNAAA----------AELQWRIAIPL---AMPLLTLIAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
            +  ++ K   +  ++ I  G F         +     P +I + ++ +  +     L+ 
Sbjct: 289 RVNPRQGKFARMAPAILIYLGYFLVLMAAKSAVRDGVIPTFIGLWWIHVALLVFGIALLS 348

Query: 355 KKK 357
           + +
Sbjct: 349 RAR 351


>gi|167646492|ref|YP_001684155.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
 gi|167348922|gb|ABZ71657.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
          Length = 378

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 132/361 (36%), Gaps = 7/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E Y+ R +    L++ L +V +A + + L   +++    +S  + LKI    +P +
Sbjct: 1   MRLIERYLFRQLLGPTLLATLALVALALLARSLSEFDVLIEQRQSAMVFLKIIALALPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     L  ++   E+++    G SR  +I P + LA+L ++        
Sbjct: 61  LSVILPIALFVAALVALNRLHTEQEIVVCFAGGMSRWRVISPAMRLAVLATLISLAMSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     I++     +  L  + +    F      L +     + +  +  +FI   + 
Sbjct: 121 VAPWSSRAIRETFFDMKSDLASTLVRPGEFTEPGPGLTVYAQVIDRDQIIHNVFIHQEKP 180

Query: 181 TQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
                 Y A+SG I   +    +IL  G     S  +  +  + +  YT    S   +  
Sbjct: 181 NGAAVTYTARSGVIAERKGLPVLILRKGSNQEFS-STGVLQYLSWDEYTFDLSSLFQSDE 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +  K  D+    L  P+     +  +      SE H RL   L+ +    +++ A    
Sbjct: 240 LLHYKIGDRYPHELFFPDLAQ-EWEQQNRVKLLSEGHWRLASPLYNMAMMSMALAAVIGG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +  R       I +  + +  V      +    + N +   + Y          +  I +
Sbjct: 299 SFSRMGYG-KRIAMVGAAAAMVQIVGFGVKAACDNNVWLNGLQYAVPLAAFWWGMSQIFR 357

Query: 357 K 357
           +
Sbjct: 358 Q 358


>gi|85713125|ref|ZP_01044158.1| Predicted permease [Idiomarina baltica OS145]
 gi|85693041|gb|EAQ31006.1| Predicted permease [Idiomarina baltica OS145]
          Length = 355

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 125/355 (35%), Gaps = 3/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI   + ++ LMS + +  ++ +I+ ++++  V   +  +        Y IP  +
Sbjct: 3   SILDRYIGATVLKTSLMSLIVLTGLSGLIRFVEQLKSVGRGSYEVIDAALFVFYSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     +  +  N+EL+++   G S++ +   V+  A+++ I +      +
Sbjct: 63  EVFFPMAALLGGLIGMGVLASNSELIVMQAAGRSKLNIAGAVMKTAVVMMIAVIAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   +  + + A+     +    +  ++ +  DD    IS+      L G+ I D    
Sbjct: 123 APPMEAKGRLIRAQEISGGSLISAQRGVWAKDGDDFIN-ISEVEDTGRLNGVLIYDFDGQ 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           Q  +       ++  +  +  L+     R +        +    +           + +K
Sbjct: 182 QQLETVTYAQTAVYSNE-SWRLSQVVETRLTQQKVIEKRLDSTVWQSSLTPDKLGVVTIK 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++S L++          +  + Y     +++   +   +  L+++           
Sbjct: 241 PESLSISGLID-YLTYLKSNEQSAQRYELALWRKVLSPVTVAVMLLVALSFIFGPLRETS 299

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                 + +    +F V       + ++ Q P  +  L   L   S    +M +K
Sbjct: 300 MGARILLGVITGFAFHVSNEIFGPLAQVYQVPAVLGALLPSLVFASVAIFVMQRK 354


>gi|237799873|ref|ZP_04588334.1| hypothetical protein POR16_13645 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022728|gb|EGI02785.1| hypothetical protein POR16_13645 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 375

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/366 (12%), Positives = 115/366 (31%), Gaps = 29/366 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L 
Sbjct: 2   IVFRYLSREVLLTLSAISAVLLVFIMSGRFIKYLAQAASGALDPGVLFMIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        M   +E+ ++  TG S+  L+   +  A L+ + +      + 
Sbjct: 62  VILPLGLFLGILMAYGRMYLESEMTVLAATGMSQQRLLAMTMGPAALVGLVVAWLSFSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P+  +    L  +      F  L    F   R    +          + L G+FI + R 
Sbjct: 122 PQGATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLGGVFISEKRM 181

Query: 181 TQTHKIYYAQSGSIDLDRQ---------AIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           +         +  +               +IL +G  +  +P + D  ++K+ +Y     
Sbjct: 182 SSDKSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVVKYDTYGAALP 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               S  +        S L                   +E   R++  L   I  L++I 
Sbjct: 242 KPEISEEITDREAIPTSELF----------GSSTPRNVAELQWRISLPLSVFIVTLMAIP 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-----NPYYIPILYLFLFCI 346
                 +  ++ +   +  ++ +          +   +E+     +     +  ++L   
Sbjct: 292 L---SRVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHAIYLCIG 348

Query: 347 SSIFLL 352
             +F  
Sbjct: 349 LVLFYW 354


>gi|206900512|ref|YP_002251020.1| permease YjgP/YjgQ, putative [Dictyoglomus thermophilum H-6-12]
 gi|206739615|gb|ACI18673.1| permease YjgP/YjgQ, putative [Dictyoglomus thermophilum H-6-12]
          Length = 356

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 125/357 (35%), Gaps = 2/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y L+     F +  L    I  V  +   ++LV + +  L +  ++    IP  
Sbjct: 1   MKIISKYFLQNFIPVFFVGLLLFTTILLVSPLFIIMDLVVARSIPLKVAFELFLTKIPPY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +    V+   + + E++ +  +G S    +  +L  +  + + +F     
Sbjct: 61  LTYTFPMAIFLAVVYVIGQFSEHGEIMAMKASGASIKYFLPAILVFSFSVQLIMFYVNEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK     K L +K+   +     E   F   ++  + +          + + I     
Sbjct: 121 VAPKAYEREKFLLSKSYNNIAVQSRENVFFNENNNFYFFRKVDPKNKRFEEILLIELLER 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV- 239
                I YA+  + D  +    + DGEV+  +     I   +FK Y +  +      +  
Sbjct: 181 GNIKLIIYAKKATWDEIKGWTFM-DGEVYSLNKEGDMIFQGRFKEYKVVLDRNPYQLVPS 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            K  ++   F +             L   ++EFH R+       IF ++++         
Sbjct: 240 SKPIEEMSIFEIIDQIRLLEGTGLNLNNLKTEFHIRIALPFTCPIFAILALGLGLNMGRG 299

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            +        IS+ + + +F     +      + +    L   +F I  I+LL  K+
Sbjct: 300 GRSLSFGLSVISIFVYYVLFSIGRSLAKAGIVSYFLGAWLGNIIFLIIGIYLLNKKR 356


>gi|198274616|ref|ZP_03207148.1| hypothetical protein BACPLE_00768 [Bacteroides plebeius DSM 17135]
 gi|198272063|gb|EDY96332.1| hypothetical protein BACPLE_00768 [Bacteroides plebeius DSM 17135]
          Length = 391

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 124/363 (34%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI+     ++  +   I+ IA V  I + I+   ++   ++ I+       IP 
Sbjct: 33  LKRLDRYIIVKFLGTYFFAIALIISIAVVFDINENIDDFINNKAPISAIIFDYYLNFIPY 92

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   L+ P +  A ++++  ++   
Sbjct: 93  YTNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRLMVPYMISAAIIALVTYVLST 152

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P    T  +     +      Y+           +       + N T     +    
Sbjct: 153 EVIPTGSVTRLKFEQVYKNKKRADYVRNIQLEVDTGVIAYMERYEDYNKTAYRFSLDKFE 212

Query: 180 DTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           D +      A+  + D       I+ D  +     + + I+        +  E  +    
Sbjct: 213 DHKLVSHLTARRITYDTTTVHRWIIKDYMIREMKGMRETITRGGRMDSIINMEPQDFLIT 272

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        L              ++ +  E+++R+       I  +I +      + 
Sbjct: 273 RGQQETMTSPQLREYIDKQKQRGFANIKVFEVEYYRRIATSFAAFILTVIGLSL---SSQ 329

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL-LMIKKK 357
            R+      + I + +SF  +  F  I      N    P L +++  I  +F+ + + +K
Sbjct: 330 KRKGGMGLHLGIGIGLSFS-YILFQTISSTFAINGNAHPNLAVWIPNILYLFIAIYLYRK 388

Query: 358 YTK 360
             K
Sbjct: 389 APK 391


>gi|91792232|ref|YP_561883.1| permease YjgP/YjgQ [Shewanella denitrificans OS217]
 gi|91714234|gb|ABE54160.1| permease YjgP/YjgQ [Shewanella denitrificans OS217]
          Length = 370

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 129/365 (35%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++  + ++     L ++ I    Q ++ +   S+     +++L + G  +P +  
Sbjct: 2   IVFRYLIAEVLKAQFAVLLVLLTIFISQQFVRVLADASNGEFPASLVLTLLGLNLPQLTL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        M    E++++ + G S   + +  L +A+   +F  +    + 
Sbjct: 62  LILPLSFFLGILLAHGRMYAENEMVVLHSVGVSEWYVARVTLLIALANLVFTCVLSMYVS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-----D 177
           P       Q+  KAQ     + L +  F    +   +   +    +       V      
Sbjct: 122 PWAEERQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVEKISKDNQLSKVFVAQLPDP 181

Query: 178 SRDTQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                   +  AQ G +  D    Q + L  G  ++ SP      +++F  Y ++ +   
Sbjct: 182 DDKEGMSNVVVAQQGRVIEDSIGSQQLQLERGVRYQGSPQGLAYQVIEFGGYRMEIKEQE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +  ++  L                   +EFH R    L   +  LI++  A 
Sbjct: 242 VDERRRKLSALSMEQL----------NDTQGPEAAAEFHWRFAIPLSIPLLTLIAVPLA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ--NPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +F ++ +  G F         +E    P Y+ + ++ +  +     L
Sbjct: 291 --RVNVRQGKFAKMFPAILLYLGYFGLMIAGRKALEDEVIPEYLGMWWIHISVLLMGVFL 348

Query: 353 MIKKK 357
           + K++
Sbjct: 349 LGKER 353


>gi|327396303|dbj|BAK13725.1| inner membrane protein YjgQ [Pantoea ananatis AJ13355]
          Length = 358

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 117/357 (32%), Gaps = 3/357 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YI + I  + LM+   +V ++ +I+ + ++        S       +   +P  +
Sbjct: 3   RVLDRYIGKTIFNTILMTLFMLVSLSGIIKFVDQLRKTGQGAYSALDAGYYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++ + +EL+++   G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGTLAQRSELVVMQAAGFTRMQVALSVMKTAIPLVLLTMAIGEFV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     +   A+          +  L+ +  ++          +          + D 
Sbjct: 123 APQGEQMARNFRAQQLYGGALVSTQSGLWAKDGNNFIYIERVKGDDEIDGVSIYNFTDDR 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVL 240
           +   + YA +   + D++  +L+  +      P     S      +           + L
Sbjct: 183 RLQSVRYAATAKWNKDKKLWVLSQVDESNLTDPKQITGSQSLTGEWKTSLTPDKLGVVAL 242

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  +++ L +          +    YR     ++ Q L   +  L+++          
Sbjct: 243 DPDALSITGLYD-YSKYLKQSGQESGRYRLNMWSKIFQPLSVAVMMLMALSFIFGPLRSV 301

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    IS    F V       +  +   P     + L  F   +I L M+ K+
Sbjct: 302 SMGVRVVTGISFGFLFYVLDQIFGPLSLVYGLPPIFGAI-LPSFAFFAISLFMLIKR 357


>gi|262367136|gb|ACY63693.1| membrane protein [Yersinia pestis D182038]
          Length = 358

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 116/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I  + LM+ L +V ++ +I+ + ++  V     S       +   IP  + +
Sbjct: 5   LDRYIGRTILNTILMTLLMLVSLSGIIKFVDQLRKVGQGDYSAASAGMYTILSIPKDIAV 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGTLASRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +   T +    +     +    +  L+ +   D          +           ++ + 
Sbjct: 125 QGEQTARNFRTQQMYGGSLLSTQSGLWAKDGSDFIYIQRVSGESELTGVNIYHFDKEDRL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA + + + D +   L+  +     +P     S      +           + +  
Sbjct: 185 LSVRYAATATYEKDNKTWRLSQVDESDLSNPTQVTGSQTLTGEWKTNLTPEKLGVVAMDP 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L +          +    Y      ++       +  L+++            
Sbjct: 245 DSLSISGL-HDYSKYLQQSGQESNRYELSMWSKVFAPFSVAVMMLMALSFIFGPLRSVPM 303

Query: 303 KKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  I     F V    F  +       P    +L   LF + SI LL+ ++
Sbjct: 304 GVRVVTGIFFGFVFYVLDHVFGRLSLVYGIPPMLGALLPSMLFLLISICLLLKRR 358


>gi|330873093|gb|EGH07242.1| hypothetical protein PSYMP_02386 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963183|gb|EGH63443.1| hypothetical protein PSYAC_00745 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 353

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 107/355 (30%), Gaps = 4/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +  +   +  +  + + T +L   L       P  
Sbjct: 1   MVKLDRYIGKSVFLAILAVLGIILGLVSLFAFIDEMGDI-NDTYTLLDALSYVMMTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++  ++EL I+   G S   ++  V+   +LL +   +    
Sbjct: 60  VYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ +         L+ R  D+     +       L          
Sbjct: 120 VAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINTVQPNGLMLGVTRYRFDDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+      D     L D           ++     + + +       ST+++
Sbjct: 180 RHMLTSSFAKEAHFKTD--YWELKDVSTTHFKEGRTEVVNAPDERWDVSLSPQLLSTVIM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                ++S L     +    +      Y   F  ++ Q    V   L++I          
Sbjct: 238 PPESLSISGL-WSYAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +     + +  +F +          +   P  + +L     C  +   L+ +
Sbjct: 297 TLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLIPAAACAFAGLYLLRR 351


>gi|22299113|ref|NP_682360.1| hypothetical protein tll1570 [Thermosynechococcus elongatus BP-1]
 gi|22295295|dbj|BAC09122.1| tll1570 [Thermosynechococcus elongatus BP-1]
          Length = 378

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 141/367 (38%), Gaps = 16/367 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + Y+L  +   F++       +A  V  I   +  ++ +   L ILL++ GY +P VL
Sbjct: 15  KLDQYLLSLLLPGFVLGLTVFTTLALTVGTIFDLVRQIADAQLPLTILLQLIGYQLPAVL 74

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +V P    +     ++ ++   E + + + G     ++ PV+  A+L+S          
Sbjct: 75  VLVFPMAVLLAVVGAMSRLSEEGEWIALRSVGICLGRVLIPVVVFALLVSGLTLALNETA 134

Query: 122 EPKCRST----IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
            P  +      + +L  + +   + + +    + R  +   +        + +QGI ++D
Sbjct: 135 VPIAKYESKKLMGELLQQERSLGSGTDIFYPEYDRHGNVRRLYYGHRFDGSRIQGITVLD 194

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               Q  ++  A+S   ++     +L+ G  +  S      ++++F    ++      S 
Sbjct: 195 FSQPQVTQVISAESAEWNVRESRWLLSQGIAYLISHTGVSRNLLQFDQQEIRLPRPAQSQ 254

Query: 238 --IVLKANDQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                  N+ +++         +P+  PEL+   +    +   Q    V+F L+ +    
Sbjct: 255 PLRPTDVNELSITQARRALQRLDPDREPELVRALKVHLAQSYAQPFLAVVFALLGVGFGL 314

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF----CISSIF 350
             +  R R       IS+++ FG  +  ++ +  +       P+   +L      + +I 
Sbjct: 315 SPSQRRGR---QGFGISVAVVFG-QYVLTFFLGALGTTGTLSPLAAAWLPHSIGLVVAIA 370

Query: 351 LLMIKKK 357
           LL    +
Sbjct: 371 LLWRADR 377


>gi|170725440|ref|YP_001759466.1| permease YjgP/YjgQ family protein [Shewanella woodyi ATCC 51908]
 gi|169810787|gb|ACA85371.1| permease YjgP/YjgQ family protein [Shewanella woodyi ATCC 51908]
          Length = 352

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 114/355 (32%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI R +  +  +  L +  ++ +I+ + ++ +V   + ++        +LIP  
Sbjct: 1   MRILDFYIARTLVSTSALCLLILTGLSGIIKWVDQLRVVGRGSYTMLDAGIYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++ + G SR+ +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQSAGLSRLQITLSAMKTAVPLMLIIMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P       +L A      +       ++ +  D         + NN         + D
Sbjct: 121 GAPAAEQKAYELQATKISGGSLIKSSRGIWAKDGDLFVNIGEVEDINNLRNITLYKFNSD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +  +A+ G    D     L D      +     ++ +    +         S + +
Sbjct: 181 LALTRTIHAERGVFSKD--HWRLLDVRQTDLTDERVTLTDLTLYRWESTLTPDKLSVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++  L+    +      +    Y     ++  Q +   +  L+++          
Sbjct: 239 KPESLSIQGLI-GYLDYLEVNNQDASRYELALWRKFMQPVTVAVMMLVALSFVFGPLRTV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  + +    SF +       +  +   P YI  +   L         + K
Sbjct: 298 TMGARVLLGVIAGFSFYISSEIFGPLTLVYGLPAYIGAMMPALIFGVGAIYFIRK 352


>gi|148546263|ref|YP_001266365.1| permease YjgP/YjgQ family protein [Pseudomonas putida F1]
 gi|148510321|gb|ABQ77181.1| permease YjgP/YjgQ family protein [Pseudomonas putida F1]
          Length = 353

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/357 (11%), Positives = 115/357 (32%), Gaps = 6/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +A +   +  +  + S T ++           P  
Sbjct: 1   MAKLDRYIGQSVLLAILAVLGIILGLASLFAFIDEMGDL-SDTYTVLEAGNFVLLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  ++EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  LYEMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ        +  ++ R  ++     +       L         +
Sbjct: 120 VAPVTENKAQADRSLAQGGGEAQSSKRGMWHRQGEEYVHINAVQPDGLLLGVTRYRFDSE 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +     +A+      D    +L D           ++     + + +       +T++L
Sbjct: 180 RKIVTSSFARRAQYQND--HWLLADVRTTYFRGDHTEVVNAPEERWDVSLTPELLNTVIL 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +++ L     +  + +      Y   F  ++ Q +      L++I         R
Sbjct: 238 APESLSITGL-WDYIHYLSDQGLNNSRYWLAFWTKVLQPMVTAALVLMAISFIFGPL--R 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +F  + + F    G   +    +   +   +  +    I ++  + + ++
Sbjct: 295 SVTLGQRVFTGVLVGFVFRIGQDLLGPSSQVFGFPPLLAVVIPAGICALAGVWLLRR 351


>gi|42524172|ref|NP_969552.1| hypothetical protein Bd2760 [Bdellovibrio bacteriovorus HD100]
 gi|39576380|emb|CAE80545.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
          Length = 359

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 121/361 (33%), Gaps = 10/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y        F+   L  + +   +  +    +V+    + + L+    Y  P +
Sbjct: 1   MNRIDRYTAWLFVGYFVGGLLVFLTLFTAVDAMS--TMVNYKDVAPSALVNYYLYSFPGI 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +     LTS+N+  EL+ +  +G S I +  P+L L  ++S   +++ + 
Sbjct: 59  ISQLLPVACLLGVILTLTSLNKANELVALFASGMSLIRIAVPMLLLVAVISALGYMAADR 118

Query: 121 --IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
                  +          +    FS +  +  +    +    I   N          +  
Sbjct: 119 VLPRATKQKNYILYYDLKKEPHRFSTIRTDRIWYRSKNSIFNIKTLNAKGDGAQGLTMYF 178

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-T 237
              +   +    +  + +     +L  G V   +  S       FK+ ++     +    
Sbjct: 179 FSDEWDLVQMITAAQVKIQGAQWLLEQGTVTIFNKDSSFPLTSPFKTKSIVMAEDSKDLQ 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +  D      L    +           Y  ++H +++     ++  L+ I  +  RA
Sbjct: 239 SAGQTADMMSQKELEHFIDKNKAAGLDTVAYEVDYHSKISFAFAGLVMCLLGIPFSVGRA 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIFLLMIK 355
             R    +  + I L++ F  ++ F      + Q+    P+   +     +  +  +++K
Sbjct: 299 --RSGGTMLNVGICLALVFA-YYVFYSSGITLGQHGTLPPVAAAWAPNIVMLGVAFVLLK 355

Query: 356 K 356
           K
Sbjct: 356 K 356


>gi|107103347|ref|ZP_01367265.1| hypothetical protein PaerPA_01004416 [Pseudomonas aeruginosa PACS2]
          Length = 355

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 109/355 (30%), Gaps = 2/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     I+ +A +   +  +N +S+S   +   L+      P  
Sbjct: 1   MVKLDRYIGVTVFVAILAVLGVILGLALLFAFIDELNDISAS-YGIGDALRFIFLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L ++  N+EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  AYDMLPMAALIGCLVGLGTLASNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   A AQ        +  L+ R   +     +                  
Sbjct: 120 VAPWTENIAQSGRALAQGGGDSQSSKRGLWHRQGREYIHINAVQPNGVLYGVTRYRFDEQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+    + D   +      +        ++  +  + +  Q      +T+V+
Sbjct: 180 RGLESASFAKRARFETDHWQLEEVTTTLLHPREKRSEVIKLPTERWDAQLSPQLLNTVVM 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    ++S L     +    +      Y   F  ++ Q L      L++I          
Sbjct: 240 EPEALSISGL-WQYIHYLADQGLNNNRYWLAFWTKVLQPLVTAALVLMAISFIFGPLRSV 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +     + +   F +          +   P  + ++     C  +   L+ +
Sbjct: 299 TLGQRIFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVVIPASICALAGVWLLRR 353


>gi|257462589|ref|ZP_05626999.1| hypothetical protein FuD12_01974 [Fusobacterium sp. D12]
 gi|317060240|ref|ZP_07924725.1| conserved hypothetical protein [Fusobacterium sp. D12]
 gi|313685916|gb|EFS22751.1| conserved hypothetical protein [Fusobacterium sp. D12]
          Length = 361

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 118/363 (32%), Gaps = 12/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  ++YI +   + F  S    + I  + QI + +  V+    S   +    G L+P +
Sbjct: 1   MKKLDIYITKNFLKYFSYSLFSFLAIFVLSQIFKVLRYVNEGQLSAGEVPLFIGNLLPGI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +     +  M  N E++ +  +G     L++  + ++  +S+ +F   + 
Sbjct: 61  IINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPILVSFFISLVVFYLNDR 120

Query: 121 IEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK--ISKYNPNNTLQGIFI 175
           + P        ++      +  L                +Y    I++         I  
Sbjct: 121 VYPGSVVRNRELRGKEDVEERELPKEKENAFFRNEEGRYVYYMKKINREKGIMDYVEILD 180

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           +     +  +I  A+ G  D +++  I  +  ++       +  +               
Sbjct: 181 MSEDFDKIERIITAKQGKYDFEKKIWIFKEVNLYYPETDRTESRVWIQDEKYRDEPDRFI 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S   +    Q ++ L        +     +    SE  KR +      +   + +     
Sbjct: 241 SLSNIVPKQQTIAEL-KKAIKEGSATGNEIREILSELGKRYSFPFASFVVSFLGLAL--- 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLM 353
            +   +   I  I IS+ + +  +         +  N Y  P L  ++      +  L  
Sbjct: 297 GSHYVRGMSILNIVISILLGYAYYLV-EGAFEALGMNGYLNPFLSGWIPNLLFLAAGLYF 355

Query: 354 IKK 356
           +++
Sbjct: 356 MRR 358


>gi|118581151|ref|YP_902401.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
 gi|118503861|gb|ABL00344.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
          Length = 354

 Score =  113 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 103/355 (29%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+ R     +L   L +  +    ++ ++++ +      ++  L      +P  
Sbjct: 1   MKIIDRYLGRSFASCWLSVNLILAGLLSFFELAKQLDDIGKGRYDVSDALLYVSLTLPGR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + +   L  + +N EL  +   G S   +    +  A+L  + L +    
Sbjct: 61  MLEMAPPSALLGSIIALGLLAKNQELTALRAGGISVQRIGWTFMKPAVLTLLVLLLGAQF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P    T       A             + R +       +  +         I +  +
Sbjct: 121 IIPTLEQTAWTRRETALSKSGTLLPRGGFWTRDERRFINLRTARDNGVQAVD--IYEFDN 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                 Y     +         L+       +     +  +             ++ + L
Sbjct: 179 RDALTGYIHGRETRIGANGNWELHHVLRKEITEQGDSVRALPRLVLPHLLTPQQTAALTL 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                ++S L +   +N   R +    Y     ++LT  +      ++S+    + A   
Sbjct: 239 PPQTLSISEL-SGTISNLQKREQNAGRYLLALWQKLTLPVITAAMIMLSLPLVCRPARSA 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  I     + F            I Q   +   L+  L  ++   +L  +
Sbjct: 298 SLGWHIMIGAIFGVVFFYLNQILGYTGLILQVSPFWTTLFPALAVLAGGAILTRR 352


>gi|330504704|ref|YP_004381573.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina NK-01]
 gi|328918990|gb|AEB59821.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina NK-01]
          Length = 354

 Score =  113 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/357 (11%), Positives = 113/357 (31%), Gaps = 5/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     I+ +A +   +  +  ++     L   L       P  
Sbjct: 1   MAKLDRYIGTQVFFAILAVLGIILGLALLFAFIDELGDLNKGDYGLGQALWYVLLTAPRR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L ++  N+EL I+   G S   ++  V+   ++L +   +    
Sbjct: 61  AYEMLPMAALIGCLIGLGTLASNSELTIMRAAGVSIGRIVWAVMKPMLVLMLAGILIGEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   A AQ        +  ++ R   +     +       L         +
Sbjct: 121 VAPLTENQAQADRALAQGGGAAQSSKRGMWHRQGQEYVHINAVQPGGVLLGVTRYRFDDE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +     +A+      +    +L++ +         ++   + + + ++       T+V+
Sbjct: 181 RRLLSASFARRAEYRDN--HWMLSNVKTTLLHEDHSEVVNQREERWDIELNPELLGTVVM 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    +++ L     +  + +      Y   F  ++ Q L      L++I         R
Sbjct: 239 EPEALSVTGL-WQYIHYLSEQGLNNARYWLAFWTKVLQPLVTGALVLMAISFIFGPL--R 295

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +F  + + F        +        +   +  L    I ++  + + ++
Sbjct: 296 SVTLGQRVFTGVLVGFIFRIAQDLLGPSSLVFGFSPLLAVLVPAGICALAGVWLLRR 352


>gi|218710647|ref|YP_002418268.1| hypothetical protein VS_2727 [Vibrio splendidus LGP32]
 gi|218323666|emb|CAV19977.1| hypothetical permease [Vibrio splendidus LGP32]
          Length = 356

 Score =  113 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 123/355 (34%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +  +  V ++ +I+ ++++  V   T  L   L      IP  +
Sbjct: 3   KILDLYIGRTIIATTSLVLVTFVGLSGIIKYVEQLRKVGRGTYDLLQALYFVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  AI L + + +     
Sbjct: 63  EMFFPMAALLGALIGLGMLAASSELVVMQAAGFSKLDIGLSVLKTAIPLMVIVTLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +      +A       ++  +  D + +I I K + +            + 
Sbjct: 123 APQAQ-KMARDLRTISVAGGSIISTQSGVWARDANDFIFIVKIDDDKLYGLNMWRYDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                 Y++      D    + +      ++ I      +   S+         + + +K
Sbjct: 182 ALKTAIYSKEVDYVGDNVWTMRDVEVTSFENEIQVTKESLPTFSWETSLAPDKLAIVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +   +      +    Y     +++TQ +   +  L+++           
Sbjct: 242 PEELSLSGLYD-YVSYLKASEQDAARYELALWRKITQPISIAVMMLMALSFIFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   I  + Q P     +   +       +L+ +K
Sbjct: 301 MGARILSGVIAGFTFYISSEFFGPISLVYQIPPAFGAIAPSVVFFGIAIMLLRRK 355


>gi|301059203|ref|ZP_07200141.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
 gi|300446693|gb|EFK10520.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
          Length = 358

 Score =  113 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 112/354 (31%), Gaps = 9/354 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+L+   +  ++  L  + +  +I     I+    +    ++++    + IP +
Sbjct: 1   MNVLTRYLLKEFFKLLIVCQLVFIALYLMIDFASGIDDFIKAGAPKSVMIAYFAFKIPAI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P         + + M RN E++ +  +G +   + +P++ LA  LS+ LF     
Sbjct: 61  AGQMLPPAVLTTVIILFSLMKRNNEVVALKASGVNTWQVAQPLVLLAAFLSVVLFFFSET 120

Query: 121 IEPKCRSTIKQLSA-KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           I P   S   ++   + +      +  +N  +    +    I +++    +         
Sbjct: 121 IVPYASSRCNEIWRIEVKKEHPGRFHGQNHVWYKGKNCIYFIKQFDSRKMMMVDPTFYFF 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTI 238
           D +                    + +G V  +      D+         L     +    
Sbjct: 181 DDKFKIARRIDGRRAIWKENGWQVQNGIVQNREKDGGYDLQKFDHLEVKLDENPKDFIRE 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            ++  +     L                 Y  E + ++      +I  L+ I  A     
Sbjct: 241 NVEPEEMGYRQLKR-FAQRLKLEGYDANRYFVELNIKIAFPFIVLIMTLMGIPIALW--- 296

Query: 299 VRQRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             ++    P+ +S+ I+   V+     +   +       P+   +L     +F 
Sbjct: 297 --KKGMGTPVAVSIGIALCFVYLLILGLARTLGFAGILPPLFSAWLANSIFLFF 348


>gi|84387841|ref|ZP_00990856.1| hypothetical protein V12B01_07608 [Vibrio splendidus 12B01]
 gi|84377356|gb|EAP94224.1| hypothetical protein V12B01_07608 [Vibrio splendidus 12B01]
          Length = 356

 Score =  113 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 123/355 (34%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +  +  V ++ +I+ ++++  V   T  L   L      +P  +
Sbjct: 3   KILDLYIGRTIIATTSLVLVTFVGLSGIIKYVEQLRKVGRGTYDLLQALYFVLLSVPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGMLAASSELVVMQAAGFSKLDIGLSVLKTAIPLMIVVTLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +      +A       ++  +  D + +I + K +              + 
Sbjct: 123 APQAQ-KMARDLRTISIAGGNIISTQSGVWARDANDFIFVVKIDDEKLYGLNMWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                 Y++      D    + +      ++ I      +   S+         + + +K
Sbjct: 182 ALKTAIYSEEVDYVGDNVWTMNDVEITSFENEIQITKESLPTYSWKTSLAPDKLAIVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +   +      +    Y     +++TQ +   +  L+++           
Sbjct: 242 PEELSLSGLYD-YVSYLKASEQDASRYELALWRKITQPISIAVMMLMALSFIFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   +  + Q P     L   +  +    +L+ +K
Sbjct: 301 MGARILSGVIAGFTFYISSEFFGPVSLVYQIPPAFGALAPSVVFLGIAIMLLRRK 355


>gi|262038173|ref|ZP_06011570.1| permease, YjgP/YjgQ family [Leptotrichia goodfellowii F0264]
 gi|261747821|gb|EEY35263.1| permease, YjgP/YjgQ family [Leptotrichia goodfellowii F0264]
          Length = 366

 Score =  113 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 59/368 (16%), Positives = 126/368 (34%), Gaps = 11/368 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI   +    +       FI  +  +++ +  + +S      ++    Y++P +
Sbjct: 1   MKIIDKYIYNSLILPSVFGISIFTFILMLNVLIEAMERLFASDLPFLSVVDYFFYVVPGI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +    V   ++   E++ ++ +G S   +I+P     ++L+      E  
Sbjct: 61  LVQTIPMGAFLGVMLVYGGLSETNEIIAMEGSGISLFRIIRPAFIFGLILTFIGLGLEIY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-FRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P+    I + +         S  EE +F    +      I K +        F++ ++
Sbjct: 121 VNPRALENINKQTKMLLATRPNSLTEEKIFLTNPEKGFGFYIDKVDNKKATASQFLLLNK 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES----ANS 235
                      + S   D   I+L+D + +            ++K   +   +       
Sbjct: 181 QGNNPYPVIFLAKSARFDPGVIVLSDVKGYSFDKEGNSQVAAEYKEQNVPVSTFFTSEEG 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPN--YRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                K ++ NL  L     NN       E       E ++R+   L  V    + +   
Sbjct: 241 EQRQKKRSEMNLKELREFYNNNIGNPEMKEAALKALIESYQRVIGPLASVFLCWLGV--- 297

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYI-IHKIEQNPYYIPILYLFLFCISSIFLL 352
                 R+  K     ISL + FG     +Y  I  ++ N      +++  F +  + + 
Sbjct: 298 LLSVGNRRSGKGISFGISLIVIFGYIAIVNYAKIMILKNNVPVSIAMWIPNFILFLLCVY 357

Query: 353 MIKKKYTK 360
              KKY +
Sbjct: 358 FSIKKYRR 365


>gi|257452882|ref|ZP_05618181.1| hypothetical protein F3_07434 [Fusobacterium sp. 3_1_5R]
          Length = 361

 Score =  113 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 122/363 (33%), Gaps = 12/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  ++Y+ +   + F  S    + I  + Q+ + +  V+    S   +    G L+P +
Sbjct: 1   MKKLDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYVNEGQLSPGQIPLFIGNLLPGI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +     +  M  N E++ +  +G     L++  +F++ L+S+ +F   + 
Sbjct: 61  IINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYLNDR 120

Query: 121 -IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--- 176
                     +    +          +EN FFR  +  Y+   K     T     +    
Sbjct: 121 VYPGSVVRNRELRGKEDVEEREVPKEKENAFFRNVEGRYVYYMKKINRETGIMDHVEVLD 180

Query: 177 -DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                 +  ++  A+ G  D  R+  +  D  ++     + +      +   +       
Sbjct: 181 MSENFDKIERMITAKKGRYDFKRKLWVFEDAHIYYPDTDTVEARAFIQEQKYMDEPEYFI 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S   +    Q ++ L        +     +    SE  KR +      +   + +     
Sbjct: 241 SLSNIVPKQQTIAEL-KKAIKEGSATGNEIREILSELGKRYSFPFASFVVSFLGLAL--- 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLM 353
            +   +   I  I IS+ + +  +         +  N Y  P L  ++      +  L  
Sbjct: 297 GSHYVRGMSILNIVISILLGYAYYLV-EGAFEALGMNGYLNPFLSGWIPNLLFLAAGLYF 355

Query: 354 IKK 356
           +++
Sbjct: 356 MRR 358


>gi|71738034|ref|YP_273425.1| hypothetical protein PSPPH_1158 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257487386|ref|ZP_05641427.1| hypothetical protein PsyrptA_29203 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289623815|ref|ZP_06456769.1| hypothetical protein PsyrpaN_01510 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649166|ref|ZP_06480509.1| hypothetical protein Psyrpa2_15674 [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298485819|ref|ZP_07003897.1| Putative membrane protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|71558587|gb|AAZ37798.1| membrane protein, putative [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|298159643|gb|EFI00686.1| Putative membrane protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|320322888|gb|EFW78979.1| hypothetical protein PsgB076_20537 [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329803|gb|EFW85791.1| hypothetical protein PsgRace4_11121 [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330867846|gb|EGH02555.1| hypothetical protein PSYAE_11461 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330989713|gb|EGH87816.1| hypothetical protein PLA107_32136 [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009018|gb|EGH89074.1| hypothetical protein PSYTB_04815 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 375

 Score =  113 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 117/366 (31%), Gaps = 26/366 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L 
Sbjct: 2   IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A L+ + +      + 
Sbjct: 62  VILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P+  +    L  K      F  L    F   R    +          + L G+FI + R 
Sbjct: 122 PQGATQFSLLINKQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKRM 181

Query: 181 TQTHKIYYAQSGSIDLDRQ---------AIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           +         +  +               +IL +G  +  +P + D  ++K+ +Y     
Sbjct: 182 SGDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGAMLP 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               S  +        S L+                  +E   R++  L   I  L++I 
Sbjct: 242 KPEISEEITDREAIPTSELI----------GNPAPRSVAELQWRISLPLSVFIVTLMAIP 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSI 349
                 +  ++ +   +  ++ +          +   +   + P  + + ++    +S  
Sbjct: 292 L---SRVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHGIYLSIG 348

Query: 350 FLLMIK 355
            LL   
Sbjct: 349 LLLFYW 354


>gi|26987719|ref|NP_743144.1| permease YjgP/YjgQ family protein [Pseudomonas putida KT2440]
 gi|24982407|gb|AAN66608.1|AE016288_7 conserved hypothetical protein [Pseudomonas putida KT2440]
 gi|313497349|gb|ADR58715.1| Permease YjgP/YjgQ family protein [Pseudomonas putida BIRD-1]
          Length = 353

 Score =  113 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/357 (11%), Positives = 115/357 (32%), Gaps = 6/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +A +   +  +  + S T ++           P  
Sbjct: 1   MAKLDRYIGQSVLLAILAVLGIILGLASLFAFIDEMGDL-SDTYTVMEAGNFVLLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  ++EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  LYEMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ        +  ++ R  ++     +       L         +
Sbjct: 120 VAPVTENKAQADRSLAQGGGEAQSSKRGMWHRQGEEYVHINAVQPDGLLLGVTRYRFDSE 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +     +A+      D    +L D           ++     + + +       +T++L
Sbjct: 180 RKIVTSSFARRAQYQND--HWLLADVRTTYFRGDHTEVVNAPEERWDVSLTPELLNTVIL 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +++ L     +  + +      Y   F  ++ Q +      L++I         R
Sbjct: 238 APESLSITGL-WDYIHYLSDQGLNNSRYWLAFWTKVLQPMVTAALVLMAISFIFGPL--R 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +F  + + F    G   +    +   +   +  +    I ++  + + ++
Sbjct: 295 SVTLGQRVFTGVLVGFVFRIGQDLLGPSSQVFGFPPLLAVVIPAGICALAGVWLLRR 351


>gi|254242518|ref|ZP_04935840.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126195896|gb|EAZ59959.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 355

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 109/355 (30%), Gaps = 2/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     I+ +A +   +  +N +S+S   +   L+      P  
Sbjct: 1   MIKLDRYIGVTVFVAILAVLGVILGLALLFAFIDELNDISAS-YGIGDALRFIFLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L ++  N+EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  AYDMLPMAALIGCLVGLGTLASNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   A AQ        +  L+ R   +     +                  
Sbjct: 120 VAPWTENIAQSGRALAQGGGDSQSSKRGLWHRQGREYIHINAVQPNGVLYGVTRYRFDEQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+    + D   +      +        ++  +  + +  Q      +T+V+
Sbjct: 180 RGLESASFAKRARFETDHWQLEEVTTTLLHPREKRSEVVKLPTERWDAQLSPQLLNTVVM 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    ++S L     +    +      Y   F  ++ Q L      L++I          
Sbjct: 240 EPEALSISGL-WQYIHYLADQGLNNNRYWLAFWTKVLQPLVTAALVLMAISFIFGPLRSV 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +     + +   F +          +   P  + ++     C  +   L+ +
Sbjct: 299 TLGQRIFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVVIPASICALAGVWLLRR 353


>gi|54307699|ref|YP_128719.1| putative permease [Photobacterium profundum SS9]
 gi|46912122|emb|CAG18917.1| putative permease [Photobacterium profundum SS9]
          Length = 356

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 126/355 (35%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  ++   +V ++ +I+ ++++  +   T  L   L      +P  +
Sbjct: 3   KILDWYIGRTIIATTALTLSTLVGLSAIIKYVEQLRKIGDGTYDLWKALIYVLLSMPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + + +     
Sbjct: 63  EMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMVLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +    +       +       ++  +  D + +I I + +  +TL  + I    D 
Sbjct: 123 APQAQ-KSARELRAIWTSGGNILSVQSGVWAKDGNDFIYIGRVHEQSTLNAVNIWQFDDK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
            T         +   ++Q  +L D  V   S I +  +      +         + +++K
Sbjct: 182 NTLSKMVFAKSASFTEQQGWLLADVTVTNISKIQQTNTKFDTLPWKTSLSPDKLAIVMVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             +  LS + +   +      +    Y   F ++L Q +   +  L+++           
Sbjct: 242 PEELALSGVYD-YVSYLKESKQDASRYELAFWRKLLQPISIAVMMLLALSFVFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +       +  + +    I  L   +  +     L+ +K
Sbjct: 301 MGARVLSGVIFGFTFYISNEVFGPMSLVYRLHPAIGALGPSIVFLFITIYLLRRK 355


>gi|237736826|ref|ZP_04567307.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229420688|gb|EEO35735.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 358

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 120/359 (33%), Gaps = 7/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL  I    +       FI  +  I+  +  +     S+  +++I  + +P +
Sbjct: 1   MKLIDKYILNEIKIPVIFGVSLFTFIFLIDIIVAMMENIIVKGISIIDVMRILSFYLPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      +   R +E   +   G S   ++KP+   A  +++F+F  +  
Sbjct: 61  LSQTIPMGMFLGIMLTFSKFTRTSEATAMSAVGMSLRDIVKPIFVAACCVTLFIFFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+  + ++ L+AK         L+E  F    D+  + I +           ++  + 
Sbjct: 121 IIPRSVAKLQFLTAKIAYENPVFQLKEKTFIDEVDEYNLYIDRMEGKEKKAKGILIFQKA 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
                              A++L + + +  +   K++   +F    +   +  +     
Sbjct: 181 EDKPFPTVIVGEEAYWKDSAMVLINSKFYNFNDKGKEVLRGEFDEKRIPLAAYFSEIEVK 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V       +  LL    +           Y+ E +K+L      ++  L+ +  +     
Sbjct: 241 VKDIEAMGIGTLLKEMKDKTPAEKIP---YKVEINKKLAVPFSTMMLSLLGVFLSIGHHR 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             +        I +            +  K     +    +++    +  + L M KKK
Sbjct: 298 SGKGANFALSLIVIFSYITCLNVGMVMATKGIIPAFI--GVWIPNVILFLLTLFMYKKK 354


>gi|110833357|ref|YP_692216.1| hypothetical protein ABO_0496 [Alcanivorax borkumensis SK2]
 gi|110646468|emb|CAL15944.1| membrane protein, putative [Alcanivorax borkumensis SK2]
          Length = 368

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 48/370 (12%), Positives = 134/370 (36%), Gaps = 20/370 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI R +  + ++    +V +    + ++ +   ++   + + L  +  + +P  L 
Sbjct: 2   ILHRYINRQVFMTTVLVTFILVMVLVSGRFIKYLAEAAAGQIAADALFLVMAFRMPEFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+ P    +    VL  M+ + E++++   G     +++ ++   ++ ++ + +    + 
Sbjct: 62  MIVPLSLYVALLLVLGRMHMDNEMVVLQAGGQGNGRVVRSLVVPILMATMLVGMFSLYVT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-------- 174
           P+  + + ++  + +       L    F         + +     N  +G+         
Sbjct: 122 PRGDAEVNRIFEEQKDRSVLELLTPGRFHVKGSSDSQRATYAEHLNREKGVLENVFVADA 181

Query: 175 -IVDSRDTQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
                         +A+SG + ++     ++L DG  ++  P   D   + FK   ++  
Sbjct: 182 RFESQGGAGRLLTVWAKSGKLVVEDGISYLLLTDGLQYQGKPGQLDYKEVGFKEARVRIG 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
              + +   K   ++   L+    +N            +E   R++  L   I  L +I 
Sbjct: 242 GEKTDSRPPKVRGRSTQELMEQQADNKEA--------LAELQWRISLILTVPIMALAAIP 293

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWG-FSYIIHKIEQNPYYIPILYLFLFCISSIF 350
            A       +  ++ P  +   +  G+     S I       P+Y+ ++++ +     +F
Sbjct: 294 LARVNPRQGRFYRLIPAVLGYMLYVGMLLVCRSAIEDHKGVLPWYLSMVWIHVSAGLVVF 353

Query: 351 LLMIKKKYTK 360
           LL    +  +
Sbjct: 354 LLYFGARLFR 363


>gi|254427836|ref|ZP_05041543.1| putative permease, YjgP/YjgQ family [Alcanivorax sp. DG881]
 gi|196194005|gb|EDX88964.1| putative permease, YjgP/YjgQ family [Alcanivorax sp. DG881]
          Length = 372

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/370 (13%), Positives = 136/370 (36%), Gaps = 20/370 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI R +  + ++    +V +    + ++ +   ++   + + L  +  + +P  L 
Sbjct: 6   ILHRYINRQVFMTTVLVTFILVMVLVSGRFIKYLAEAAAGEIAADALFLVMAFRMPEFLQ 65

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+ P    +    VL  M+ + E++++   G     +++ ++   ++ +  + +    + 
Sbjct: 66  MIVPLSLYIALLLVLGRMHMDNEMVVLQAGGQGNGRVVRSLVVPILMATTLVGMFSLYVT 125

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-------- 174
           P+  + + ++  + +       L    F         + +     N  +G+         
Sbjct: 126 PRGDAEVNRIFEEQKDRSVLELLTPGRFHVKGSSDSQRATYAEHLNREKGVLENVFVADA 185

Query: 175 -IVDSRDTQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
                 +       +A+SG + ++     ++L DG  ++  P   D   + FK   ++  
Sbjct: 186 RFESQGEAGRLLTVWAKSGKLVVEEGISYLLLTDGFQYQGKPGQLDYKEVGFKEARVRIG 245

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
              + +   K   ++   L++   +N            +E   RL+  L   I  L +I 
Sbjct: 246 GEKTDSRPPKVRGRSTQELVDQRADNKAA--------LAELQWRLSLILTVPIMALAAIP 297

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWG-FSYIIHKIEQNPYYIPILYLFLFCISSIF 350
            A       +  ++ P  +   +  G+     S I       P+Y+ ++++ L   + +F
Sbjct: 298 LARVNPRQGRFYRLIPAVLGYMLYVGMLLVCRSAIEDHKGSLPWYLSMVWIHLSAGAVVF 357

Query: 351 LLMIKKKYTK 360
           LL    +  +
Sbjct: 358 LLYFGGRLFR 367


>gi|28868484|ref|NP_791103.1| hypothetical protein PSPTO_1273 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968382|ref|ZP_03396526.1| membrane protein [Pseudomonas syringae pv. tomato T1]
 gi|301384648|ref|ZP_07233066.1| hypothetical protein PsyrptM_18507 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058899|ref|ZP_07250440.1| hypothetical protein PsyrptK_02847 [Pseudomonas syringae pv. tomato
           K40]
 gi|302133012|ref|ZP_07259002.1| hypothetical protein PsyrptN_16559 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28851722|gb|AAO54798.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213927020|gb|EEB60571.1| membrane protein [Pseudomonas syringae pv. tomato T1]
 gi|331015231|gb|EGH95287.1| hypothetical protein PLA106_04712 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 353

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 107/355 (30%), Gaps = 4/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +  +   +  +  + + T +L   L       P  
Sbjct: 1   MVKLDRYIGKSVFLAILAVLGIILGLVSLFAFIDEMADI-NDTYTLVDALSYVMMTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++  ++EL I+   G S   ++  V+   +LL +   +    
Sbjct: 60  VYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWSVMKPMLLLMVAGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ +         L+ R  D+     +       L          
Sbjct: 120 VAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINTVQPNGLMLGVTRYRFDDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+      D     L D           ++     + + +       ST+++
Sbjct: 180 RHMLTSSFAKEAHFKTD--YWELKDVSTTHFKEGRTEVVNAPDERWDVSLSPQLLSTVIM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                ++S L     +    +      Y   F  ++ Q    V   L++I          
Sbjct: 238 PPESLSISGL-WSYAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +     + +  +F +          +   P  + +L     C  +   L+ +
Sbjct: 297 TLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLIPAAACAFAGLYLLRR 351


>gi|170723397|ref|YP_001751085.1| permease YjgP/YjgQ family protein [Pseudomonas putida W619]
 gi|169761400|gb|ACA74716.1| permease YjgP/YjgQ family protein [Pseudomonas putida W619]
          Length = 371

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/353 (12%), Positives = 119/353 (33%), Gaps = 26/353 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   +      ++L  I G+ +P  L 
Sbjct: 2   IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPSVLFLIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A L+++ +      + 
Sbjct: 62  LILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGLTMAPAALVALLVAWLSLSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--------RLDDDLYIKISKYNPNNTLQGIF 174
           P   + ++Q+  +      F  L    F            ++L    S        +  F
Sbjct: 122 PLGVAQVQQIIGQQDALTEFDTLVPGRFQTLRDGSRVTYTEELTDDRSNLTGVFISEKRF 181

Query: 175 IVDSRDTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
             D    +   +  A+ G  +      + ++L +G  +  +P   D   +K+ +Y +   
Sbjct: 182 NQDKTKDRAPSVLVAEKGHQEVQADGNRYLVLQNGYRYDGNPGQADYRAIKYDTYGVLLP 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               S  V +      S L+                 R+E   R++  +   I  L+++ 
Sbjct: 242 KPEVSEEVTEREAIPTSQLI----------GNAGLRERAELQWRISLPILVFIVTLLAVP 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLF 342
                 +  ++ +   +  ++ +          +   +   + P  + + ++ 
Sbjct: 292 L---SRVNPRQGRFLKLLPAILLYMAYLTMLISVRGALEKGKLPIALGMWWVH 341


>gi|104783411|ref|YP_609909.1| hypothetical protein PSEEN4442 [Pseudomonas entomophila L48]
 gi|95112398|emb|CAK17125.1| conserved hypothetical protein; putative membrane protein
           [Pseudomonas entomophila L48]
          Length = 371

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/366 (13%), Positives = 122/366 (33%), Gaps = 26/366 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   +       +L  I G+ +P  L 
Sbjct: 2   IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLFMIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   L  A L+++ +      + 
Sbjct: 62  LILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLAMTLAPAALVALLVAWLSLSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P   + ++++ A+      F  L    F   R    +       +    L G+FI + R 
Sbjct: 122 PLGVAQVQKIIAQQDALTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRINLAGVFISEKRF 181

Query: 181 TQTHKIYYAQSGSI---------DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
            Q      A S  +             + ++L +G  +  +P   D   +K+ +Y +   
Sbjct: 182 NQDKTKDRAPSVLVAEKGHQEVQADGNRYLVLQNGYRYDGNPGQADYRAIKYDTYGVLLP 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               +  V +      S L                  R+E   RL+  L   +  L+++ 
Sbjct: 242 KPEVAEEVTEREAIPTSDLF----------GNPGVRERAELQWRLSLPLLVFVVTLLAVP 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSI 349
                 +  ++ +   +  ++ +          +   +   + P  + I ++    +   
Sbjct: 292 L---SRVNPRQGRFLKLLPAILLYMAYLTMLISVRGALEKGKLPISLGIWWVHGLFLLIG 348

Query: 350 FLLMIK 355
             LM  
Sbjct: 349 LALMYW 354


>gi|189425644|ref|YP_001952821.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
 gi|189421903|gb|ACD96301.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
          Length = 359

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 122/359 (33%), Gaps = 8/359 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+     R FL+     + +  ++  ++++   S +  SL+ +L+   + IP +L 
Sbjct: 4   IVGRYLAGTWLRLFLLCQGGFLAVYLILDFMEKLGRFSKAGASLSAILQFFLFKIPEMLG 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              PF   M T   L  ++R++EL  + + G S   ++ P+L L +L S+ L ++   + 
Sbjct: 64  QTMPFAVLMATLLALGMLSRSSELTALRSCGLSIPRIVLPILMLGLLGSLVLLVNSEFVV 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           PK    ++ +        + +            +  I  +K     T     +     + 
Sbjct: 124 PKSYQQMEHIEKVVIKKQSVNTFFRLNNIWFRSNNLILQAKVFEPLTRTLKGVTVWELSA 183

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             +          L             R       +      S  L  +  +   +   A
Sbjct: 184 DMQPVRRMDAEQALYGSGGWELLQVRTRSFAGQGGVVASARLSVPLTLKVDDLRILDNNA 243

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           ++ +   L      +          YR+  H +L       +  ++ I  A      R  
Sbjct: 244 DNFSFRKL-REYAVSLEKGGYPAGRYRTMMHAKLALPFGAFVMVVLGIPFAL--KTGRTS 300

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMIKKK 357
                +   ++I F  ++  +  +    ++    P +  +    +F ++ I+L M  K+
Sbjct: 301 GVAMGVGAGVAIGFA-YFIINAAVQSYGRSGVLPPFVAAWGANLIFVLTGIWLSMTVKQ 358


>gi|146308540|ref|YP_001189005.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina ymp]
 gi|145576741|gb|ABP86273.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina ymp]
          Length = 354

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/357 (11%), Positives = 112/357 (31%), Gaps = 5/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     I+ +A +   +  ++ ++     L   L       P  
Sbjct: 1   MAKLDRYIGAQVFFAILTVLGIILGLALLFAFIDELSDLNKGDYGLGQALWYVLLTAPRR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L ++  N+EL I+   G S   ++  V+   ++L +   +    
Sbjct: 61  AYEMLPMAALIGCLIGLGTLASNSELTIMRAAGVSIGRIVWAVMKPMLVLMLAGILIGEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   A AQ        +  ++ R   +     +       L         +
Sbjct: 121 VAPLTENQAQADRALAQGGGAAQSSKRGMWHRQGQEYVHINAVQPGGLLLGVTRYRFDDE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +     +A+           +L + +         ++   + + + ++      ST+V+
Sbjct: 181 RRLQSASFARRAE--HRGDHWVLRNVQTTFLHDNRSEVVNQREERWDIELSPQLLSTVVM 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    +++ L     +    +      Y   F  ++ Q L      L++I         R
Sbjct: 239 EPESLSITGL-WQYIHYLAEQGLNNARYWLAFWTKVLQPLVTGALVLMAISFIFGPL--R 295

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +F  + + F        +        +   +  L    I ++  + + ++
Sbjct: 296 SVTLGQRVFTGVLVGFIFRIAQDLLGPSSLVFGFSPLLAVLVPAGICALAGVWLLRR 352


>gi|322834555|ref|YP_004214582.1| permease YjgP/YjgQ family protein [Rahnella sp. Y9602]
 gi|321169756|gb|ADW75455.1| permease YjgP/YjgQ family protein [Rahnella sp. Y9602]
          Length = 356

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 113/354 (31%), Gaps = 2/354 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I  + +M+   +V ++ +I+ + ++  V     S       +   +P  + +
Sbjct: 5   LDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQGGYSAAGAGLYTLLSVPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +    + +     Q+        +N  +  D   +I I +      L G+ I    +   
Sbjct: 125 QG-EQMARNYRAQQMYGGSLLSTQNGVWAKDGHDFIYIERVAGEKELTGVNIYHFNEENK 183

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            +     S +   + +  +    E      +    S      +           + L  +
Sbjct: 184 LQSVRYASSATFDNGEWKLSQVDESDLTDQLQITGSQTLTGVWKTNLTPDKLGVVALDPD 243

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++S L N          +  + Y+     ++   L   +  L+++             
Sbjct: 244 ALSISGLHN-YVKYLKQSGQEAKRYQLNMWSKIFSPLSVAVMMLMALSFIFGPLRSVPMG 302

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I     F V       +  +   P  +  L            L++KK+
Sbjct: 303 VRVVTGICFGFLFYVLDQIFGPLSLVYSIPPILGALLPSGLFFVISMFLLLKKR 356


>gi|260771006|ref|ZP_05879935.1| putative membrane protein [Vibrio furnissii CIP 102972]
 gi|260614243|gb|EEX39433.1| putative membrane protein [Vibrio furnissii CIP 102972]
 gi|315179054|gb|ADT85968.1| hypothetical permease, YjgP/YjgQ family [Vibrio furnissii NCTC
           11218]
          Length = 356

 Score =  112 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 125/358 (34%), Gaps = 5/358 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  + ++     V ++ +I+ ++++  V   T  L   L      IP  +
Sbjct: 3   KILDWYIGRTIIATTMLVLATFVGLSGIIKYVEQLRKVGDGTYDLMQALLFVVLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  A+ L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALAASSELVVMQAAGFSKLDIGLSVLKTAVPLMIIITLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L A A        +   ++ R  +D          +N L G+ +    + 
Sbjct: 123 APQAQKAARDLRAFATSGGKILSVRTGVWARDINDFIFI--GKIDDNRLYGMNMWRFDEH 180

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANSSTIVL 240
           +  +          L   + ++ D EV   +         +    +         + + +
Sbjct: 181 KQLRHVIFAKQVDYLGGNSWVMKDVEVTDMNDDVVITKQSLPEYRWETSLAPDKLAVVTV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K  +  LS L +   +      +    Y   F +++TQ     +  L+++          
Sbjct: 241 KPEELALSGLYD-YVHYLKASEQDASRYELAFWRKITQPFSIAVMMLMALSFIFGPLRSV 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                    +    +F +   F   +  +   P     +        SI LL++++K 
Sbjct: 300 TMGARILSGVIAGFTFYISSEFFGPLSLVYGIPPVFGAVA-PSIVFLSIALLLLRRKL 356


>gi|224024955|ref|ZP_03643321.1| hypothetical protein BACCOPRO_01686 [Bacteroides coprophilus DSM
           18228]
 gi|224018191|gb|EEF76189.1| hypothetical protein BACCOPRO_01686 [Bacteroides coprophilus DSM
           18228]
          Length = 369

 Score =  112 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 54/363 (14%), Positives = 123/363 (33%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI+     ++  +   I+ IA V  I + I+   ++   L  I+       IP 
Sbjct: 11  LKRLDKYIIIKFLGTYFFAIALIISIAVVFDINENIDDFINNKAPLKAIVFDYYLNFIPY 70

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   L+ P +  A ++++  +I   
Sbjct: 71  YTNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRLMVPYMISAGIIALVTYILST 130

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P    T  +     +      Y+           +       + N T     +    
Sbjct: 131 EVIPTGSVTRLKFEQVYKNKKKVDYVRNIQLEVDSGVIAYMERYEDYNRTGYRFSLDKFE 190

Query: 180 DTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           D +      A+  + D       I+ D  +     + + I+        +  E  +    
Sbjct: 191 DHKLVSHLTARRVTYDTATVHKWIIRDYMIREMKGMRETITRGDRMDSIINMEPQDFLIT 250

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        L              ++ +  E++KR+       I  +I +      + 
Sbjct: 251 RGQQETMTSPQLREYIDKQKKRGFANIKIFEVEYYKRIATSFAAFILTVIGLSL---SSQ 307

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL-LMIKKK 357
            R+      + I + +SF  +  F  I      N    P L +++  I  +F+ + + +K
Sbjct: 308 KRKGGMGLHLGIGIGLSFS-YILFQTISSTFAINGNVPPNLAVWIPNILYLFIAIYLYRK 366

Query: 358 YTK 360
             K
Sbjct: 367 APK 369


>gi|271498969|ref|YP_003331994.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech586]
 gi|270342524|gb|ACZ75289.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech586]
          Length = 356

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 116/356 (32%), Gaps = 2/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YI + I  + +M+   +V ++ +I+ + ++  V     S+      +   +P  +
Sbjct: 3   RVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQGGYSVMGAGLYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGALATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P     + +      +        ++  +  D + ++ I +   +N LQG+ +      
Sbjct: 123 APAG-EQMARNYRSQMMYGGSMLSTQSGLWAKDGNDFVYIQRVAGDNELQGVNLYHFDKH 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                    + ++  +    +    E           S      +           + L 
Sbjct: 182 SKLLSVRYAASAVYENGSWKLSQVEESDLNDSKQIGGSQTVSGEWKTNLTPDKLGVVALD 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            +  ++  L +          +    Y+     +L   L   +  L+++           
Sbjct: 242 PDALSIRGLYD-YIKYLRQSGQEANRYQLNMWSKLFAPLSVAVMMLMALSFIFGPLRSVP 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I IS    F V       +  +   P  +  L      +    +L++K++
Sbjct: 301 AGMRIVIGISFGFLFYVLDQIFGPLSLVYHMPPVLGALLPSALFLFISVMLLLKRR 356


>gi|240014488|ref|ZP_04721401.1| hypothetical protein NgonD_07558 [Neisseria gonorrhoeae DGI18]
 gi|240121010|ref|ZP_04733972.1| hypothetical protein NgonPI_04426 [Neisseria gonorrhoeae PID24-1]
          Length = 356

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/360 (11%), Positives = 116/360 (32%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVCALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +       +  + +  I +    P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTDH--TGLWLKEKNSIINVRGMLPDHTLLGIKIWARND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++     +  L +           + S    +++ +         +++
Sbjct: 179 KNELAEAVEADSAVLNSDGSWQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNLMDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L      +     +  + Y   + ++L   +   +  L++     +     
Sbjct: 239 KPDQMSVGELT-TYIRHLQNNSQNTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQTTRHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F +         ++   P ++    L     + + + +I+K+  +
Sbjct: 298 NMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAG-ALPTIAFALLAVWLIRKQEKR 356


>gi|307155108|ref|YP_003890492.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
 gi|306985336|gb|ADN17217.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
          Length = 405

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/372 (12%), Positives = 117/372 (31%), Gaps = 20/372 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + YI   +   +++S      +   +  +    N V      +   LKI  Y +P  
Sbjct: 34  SLMDRYIATQLIPPYILSVGLFTSMGVAIANLSDLSNKVLEYDLPIVDALKILLYRVPEF 93

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    + T      ++  +EL+ + + G S      P + L+++++   FI    
Sbjct: 94  FSYALPISVLLTTLMTYGRLSSESELIALRSCGISLWRATIPAVMLSLIVTGLTFIFNEC 153

Query: 121 IEPKCRST------------IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN 168
           + P+                      K      +  ++      L     +  ++     
Sbjct: 154 VVPETNYRATGILVKVLHEERHFWQNKDIFYPNYEQIKLPNGQTLRQLKSLFYAEKFDGQ 213

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            +Q + I++    + ++I  + +   + D+      DG V+     +     + FK    
Sbjct: 214 KMQSLTIINWLGERLNEIVVSDTAQWNSDQNIWDFFDGTVYLIDGNAAYKEAVTFKHQQF 273

Query: 229 QTESA--NSSTIVLKANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
                    ++      + NL   +   N    +   + +  +     +++      ++F
Sbjct: 274 PLPKEAFEFASQGRSPYEMNLFQAVQYKNLLQESGDTKNVRFFEVRIQQKIAFPFICLVF 333

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLF 344
           G++      K   + +      + +++ I F  +    +             +  +L  F
Sbjct: 334 GVMGAAIGAKPQQMSRG---TSLGLTVGIVFAYYMVNFFTGSFGMIGLLSPSMAAWLPNF 390

Query: 345 CISSIFLLMIKK 356
               I   ++KK
Sbjct: 391 FGVGIGGWILKK 402


>gi|22297556|ref|NP_680803.1| hypothetical protein tlr0012 [Thermosynechococcus elongatus BP-1]
 gi|22293733|dbj|BAC07565.1| tlr0012 [Thermosynechococcus elongatus BP-1]
          Length = 379

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 109/361 (30%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIA-WVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + YILR + R F+        IA  +  +   I  +      L   +++    +PT 
Sbjct: 18  SLLDRYILREMIRPFVFGFGIFTAIAAVIGTVFYLIRNMVEHHLGLLSAIQVFFLRLPTF 77

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN- 119
             +  P           + ++R +EL+   + G S + L++P L       +  F     
Sbjct: 78  AVLGIPMAMLFGALLSYSQLSRRSELIACKSCGVSPVRLVRPALLAGFCALLCTFALNEL 137

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           +  P     IK L                 + R  D    ++   +  +      +    
Sbjct: 138 VAPPLAYRAIKTLEVAIHRPQPTFQTRNIFYRRFGDGHLRQLFFAHRFDGKVMGQVTVLN 197

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             Q        +        A +   G  H             F               +
Sbjct: 198 FEQGELREIITAQEAQWQGSAWLFRQGTYHHLRGDRDYDVAEIFSERRFAYPRTPLDLAM 257

Query: 240 L-KANDQNLSFLLNPNPNNPNYRP--ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +  +   S  +             + L  +R +  ++L+     + F +I  V     
Sbjct: 258 ETRVPEFMTSREIYRYLQILAESGDAKRLRQWRVQLQEKLSLPFLCLSFAVIGAVLGISS 317

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF--CISSIFLLMI 354
               Q +      +S++I FG ++  ++I     +     PI+  +L    +S+I L M+
Sbjct: 318 PRQGQGR---AFGLSVAIIFG-YYVAAFIFTAFGEGGAVHPIVASWLPKGIVSAIALGML 373

Query: 355 K 355
            
Sbjct: 374 Y 374


>gi|66044343|ref|YP_234184.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae B728a]
 gi|302188386|ref|ZP_07265059.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae 642]
 gi|63255050|gb|AAY36146.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae B728a]
 gi|330899517|gb|EGH30936.1| permease YjgP/YjgQ [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330950946|gb|EGH51206.1| permease YjgP/YjgQ [Pseudomonas syringae Cit 7]
 gi|330969234|gb|EGH69300.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 375

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 47/366 (12%), Positives = 117/366 (31%), Gaps = 26/366 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L 
Sbjct: 2   IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A L+ + +      + 
Sbjct: 62  VILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P+  +    L  +      F  L    F   R    +          + L G+FI + R 
Sbjct: 122 PQGATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKRM 181

Query: 181 TQTHKIYYAQSGSIDLDRQ---------AIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           +         +  +               +IL +G  +  +P + D  ++K+ +Y     
Sbjct: 182 SSDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGAMLP 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               S  +        S L+                  +E   R++  L   I  L++I 
Sbjct: 242 KPEISEEITDREAIPTSELI----------GNPAPRSVAELQWRISLPLSVFIVTLMAIP 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSI 349
                 +  ++ +   +  ++ +          +   +   + P  + + ++    +S  
Sbjct: 292 L---SRVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHAIYLSIG 348

Query: 350 FLLMIK 355
            LL   
Sbjct: 349 LLLFYW 354


>gi|330938932|gb|EGH42431.1| permease YjgP/YjgQ [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 375

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 47/366 (12%), Positives = 118/366 (32%), Gaps = 26/366 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L 
Sbjct: 2   IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A L+ + +      + 
Sbjct: 62  VILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P+  +    L  +      F  L    F   R    +          + L G+FI + R 
Sbjct: 122 PQGATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKRM 181

Query: 181 TQTHKIYYAQSGSIDLDRQ---------AIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           +         +  +               +IL +G  +  +P + D  ++K+ +Y     
Sbjct: 182 SSDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGAMLP 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               S  +        S L+           +      +E   R++  L   I  L++I 
Sbjct: 242 KPEISEEITDREAIPTSELI----------GDPAPRSVAELQWRISLPLSVFIVTLMAIP 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSI 349
                 +  ++ +   +  ++ +          +   +   + P  + + ++    +S  
Sbjct: 292 L---SRVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHAIYLSIG 348

Query: 350 FLLMIK 355
            LL   
Sbjct: 349 LLLFYW 354


>gi|192358887|ref|YP_001981939.1| putative permease, YjgP/YjgQ family [Cellvibrio japonicus Ueda107]
 gi|190685052|gb|ACE82730.1| putative permease, YjgP/YjgQ family [Cellvibrio japonicus Ueda107]
          Length = 352

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 108/357 (30%), Gaps = 5/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    YI R +  +  ++ L  + + ++   + ++  +     +           +P  
Sbjct: 1   MRKITGYISRTVFSAIALTLLVFISLDFIFSFIDQLGKI-RGGYTSREAFIYMSLTVPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P+   + +   L  +  ++EL +I   G S   +    L  A +  +   I    
Sbjct: 60  LYELIPYSCLIGSLVGLGLLANSSELTVIRAAGVSVKRIAWMALRPAFVFIVAAVILGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P             +             +  + + Y+ +    P+  + G+      +
Sbjct: 120 VAPYTEQMADNRRLLVR---DNWVRTTTNMWNREGNEYMHVQAVLPSGVIYGLTRYQFDE 176

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +          +I  +       D  V R         ++  + +    +    + +V+
Sbjct: 177 QRRLVAASYTKQAIYQEEGYWQEEDVAVTRIGEQGVSNDLLPSRRWETPLKPNLLNILVM 236

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D ++S L N   N    +      Y   F ++  Q L  +   LI+I          
Sbjct: 237 DPEDMSISNL-NYYSNYLKEQNLRPGNYALAFWQKTLQPLATMSLVLIAISFIFGPLRSV 295

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              +     I   + F +          +        +L   + CI     L+ + +
Sbjct: 296 TMGQRIFTGIVFGVGFQLLQKLMGPASMVFGFAPVFAVLIPIVICILVGVFLLSRAR 352


>gi|317486217|ref|ZP_07945051.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
 gi|316922516|gb|EFV43768.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
          Length = 385

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/361 (12%), Positives = 111/361 (30%), Gaps = 8/361 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              +  I + I   F+++   ++ +  + + +Q   L       +   + + GY+ P  L
Sbjct: 3   SLLQRQIFKEIANLFVLAVGVLLTLILISRAVQMRELFLGLDLGILDTVLLFGYMTPLFL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +V P    +        M+ + EL+ +   G +   ++   L  +++  +         
Sbjct: 63  MLVIPIACMLSVFLTFLRMSTDRELVALRAGGINIYQMLPAPLLFSVICMLLTLWVSLHW 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRD 180
                   ++   +         ++  +F     +L +   + NP +  +  + + D   
Sbjct: 123 LAWGMGHFRETILEIANTRARVVVQPGVFNTDFPNLVLFARQVNPGDGDMSQVLVDDRSH 182

Query: 181 TQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--AN 234
            + H    A  G  D D        +L DG+++        +         L  +S   +
Sbjct: 183 PERHMTILAPEGRFDTDTERGELVFLLEDGKIYTTDKKGASVLAFDEYKVRLPLDSLFKS 242

Query: 235 SSTIVLKANDQNLSFLLNPNPNN-PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                ++  + + S L +                   E HKR    +  +   L  +  A
Sbjct: 243 LDLGDVRPREMSWSKLSSITREEALKVDANYANKLEVERHKRWAYPVACIALTLFVLPLA 302

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                + ++  +        + + +              P     +   LF    I+ L 
Sbjct: 303 SAFEGLHRQTGLMLALAMFFVYYSLMSLGFSTGESGAIPPSIGLWVPNILFLCLGIYGLW 362

Query: 354 I 354
           +
Sbjct: 363 L 363


>gi|220907915|ref|YP_002483226.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7425]
 gi|219864526|gb|ACL44865.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7425]
          Length = 389

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 132/364 (36%), Gaps = 14/364 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + Y+L  +  +F+ S      I   V  +   +   + +   L++LL++    +P  +
Sbjct: 22  LLDRYVLSALLTAFVFSVAAFTGIGVAVGVVFDLVQDFADAQIPLSLLLQLLWLQLPYTI 81

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    + + +    ++ ++EL+ + + G     L+ PV+   +L+    F     +
Sbjct: 82  SFCLPLGVLLASLSTFNRLSADSELVALQSVGVGIYRLVLPVVLFGLLVGGLAFGFNTSL 141

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQGIFIVD 177
            P  RS   QL  +           +N+F+           +  ++      + G+ ++D
Sbjct: 142 VPASRSQSSQLLQEVVQQGQAVTQAQNIFYPEYGPDREIQRLFYARQFDGQQMYGLTVLD 201

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
              T  +++  A+S   D         +G ++         +I++F    LQ      + 
Sbjct: 202 FSQTGVNQVITAESAVWDSTISVWTFTNGTIYLVDADGSYRNILQFTEQQLQIPRDPLAL 261

Query: 238 IVLKAN--DQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              K +  + +L+          P+  P  +   +    ++       +I GLI      
Sbjct: 262 ATPKPSISEMSLAEARRYLEQLQPDGDPREIRKLQLYIQQQYAIPWQGLILGLIGAGLGI 321

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF--CISSIFLL 352
           K    R+ +      +SL I F   +  S++   + ++    P++  +        + L 
Sbjct: 322 KSQPRRKSR---GFGLSLVIIFA-QYVLSFLTAALARSGGLSPLVAAWSVNGLGLGVALW 377

Query: 353 MIKK 356
           ++ +
Sbjct: 378 LLLR 381


>gi|319902150|ref|YP_004161878.1| permease YjgP/YjgQ family protein [Bacteroides helcogenes P 36-108]
 gi|319417181|gb|ADV44292.1| permease YjgP/YjgQ family protein [Bacteroides helcogenes P 36-108]
          Length = 378

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 128/363 (35%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S     N I+       IP 
Sbjct: 20  LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWNAIVFDYYLNFIPY 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F   +
Sbjct: 80  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFRRMLRPYMVSAAIIAVITFCLGS 139

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I PK   T      K       +             +       + + T     +   R
Sbjct: 140 YIIPKGSVTRINFEDKYYKPRKANTARNIQLEVDSGVIAYIERFEDYSKTGYRFSLDKFR 199

Query: 180 DTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           D Q      A+S + D       I+ D  +     + + I+       TL  E A+   +
Sbjct: 200 DKQLVSHLTARSITYDTTSVHKWIVKDYMIRAMDGMKESITKGDRIDTTLFMEPADFLIM 259

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        L              ++ +  E+HKR+       I  LI +      + 
Sbjct: 260 KNQQEMLTSPQLSEYIDRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSL---SSK 316

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKK 357
             +      + I L++SF  +  F  I      N    P++ +++   + +   L + +K
Sbjct: 317 KTKGGMGLHLGIGLALSFS-YILFQTIASTFAVNGNVPPVIAIWIPNVLYAFVALYLYRK 375

Query: 358 YTK 360
             K
Sbjct: 376 APK 378


>gi|170723396|ref|YP_001751084.1| permease YjgP/YjgQ family protein [Pseudomonas putida W619]
 gi|169761399|gb|ACA74715.1| permease YjgP/YjgQ family protein [Pseudomonas putida W619]
          Length = 353

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 117/357 (32%), Gaps = 6/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +A +   +  ++ + S T ++      +    P  
Sbjct: 1   MVKLDRYIGQSVLMAILAVLGIILGLASLFAFIDEMSDL-SDTYTVMDAGWFTLLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  ++EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  LYDMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ        +  ++ R  D+     S       L         +
Sbjct: 120 VAPISENKAQADRSLAQGGGEAQSSKRGMWHRQGDEFVHINSVQPNGLLLGVTRYRFDDE 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +     +A+    + D    +L+D           ++     + + +       +T+VL
Sbjct: 180 RKIVTSSFARRARYEND--HWVLSDVSTTYFRGDHTEVVKSSEERWDVSVTPQLLNTVVL 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +++ L     +  + +      Y   F  ++ Q        L++I         R
Sbjct: 238 APESLSITGL-WDYIHYLSDQGLNNARYWLAFWTKVLQPAVTAALVLMAISFIFGPL--R 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +F  + + F        +    +   +   +  +    + ++  L + ++
Sbjct: 295 SVTLGQRVFTGVLVGFVFRIAGDLLGPSSQVFGFPPLLAVVIPAGVCALAGLWLLRR 351


>gi|317059424|ref|ZP_07923909.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313685100|gb|EFS21935.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 362

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 122/363 (33%), Gaps = 12/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  ++Y+ +   + F  S    + I  + Q+ + +  V+    S   +    G L+P +
Sbjct: 2   MKKLDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYVNEGQLSPGQIPLFIGNLLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +     +  M  N E++ +  +G     L++  +F++ L+S+ +F   + 
Sbjct: 62  IINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYLNDR 121

Query: 121 -IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--- 176
                     +    +          +EN FFR  +  Y+   K     T     +    
Sbjct: 122 VYPGSVVRNRELRGKEDVEEREVPKEKENAFFRNVEGRYVYYMKKINRETGIMDHVEVLD 181

Query: 177 -DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                 +  ++  A+ G  D  R+  +  D  ++     + +      +   +       
Sbjct: 182 MSENFDKIERMITAKKGRYDFKRKLWVFEDAHIYYPDTDTVEARAFIQEQKYMDEPEYFI 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S   +    Q ++ L        +     +    SE  KR +      +   + +     
Sbjct: 242 SLSNIVPKQQTIAEL-KKAIKEGSATGNEIREILSELGKRYSFPFASFVVSFLGLAL--- 297

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLM 353
            +   +   I  I IS+ + +  +         +  N Y  P L  ++      +  L  
Sbjct: 298 GSHYVRGMSILNIVISILLGYAYYLV-EGAFEALGMNGYLNPFLSGWIPNLLFLAAGLYF 356

Query: 354 IKK 356
           +++
Sbjct: 357 MRR 359


>gi|319954060|ref|YP_004165327.1| permease yjgp/yjgq family protein [Cellulophaga algicola DSM 14237]
 gi|319422720|gb|ADV49829.1| permease YjgP/YjgQ family protein [Cellulophaga algicola DSM 14237]
          Length = 359

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 134/362 (37%), Gaps = 8/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YIL+    +F +  L  + I  ++ + ++ N +  +   LN +L   G     +
Sbjct: 1   MTILDKYILKRYLVTFSVMLLLFIPIGIMVHLSEQYNKMQDNEAPLNEILMYLGNFSIYI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             M+ P    +      + +  NTE++ + ++G S    ++P L  A++++ F+ +    
Sbjct: 61  GSMLLPIFLFLSVIFFTSKLAGNTEIVAMLSSGISYGRFLRPYLMGAVIVAAFMLLMGMF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P       +   K         + EN+F +L+ + +I +S+++P   +   F ++  +
Sbjct: 121 IVPNASKGFNEFKFKYLKKGKQDRVTENIFNQLNANDFIYVSRFDPTRDIGYNFSMEHFN 180

Query: 181 TQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                 Y   +             L           ++ +   +        +  + + +
Sbjct: 181 KDNVLEYKLSAANIRWIEADSIYRLTSYVKRTLKGDTEILETKRRLDTVFPFKINDLTPV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A  +NL  L     N        + TY    +KR T  +   I  LI++      + 
Sbjct: 241 SYVAETKNLFELNEFIANEKRKGASNINTYILVKYKRWTMPITAFILTLIAVAV---SSQ 297

Query: 299 VRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            R+      +   + ++F   +    F  +  +   +P    I+   LF   + +LL   
Sbjct: 298 KRRGGMGVNLAFGILVAFVYIFFDRVFGTLAEQSGFSPLLAVIVPNVLFGFLAFYLLQKA 357

Query: 356 KK 357
           K+
Sbjct: 358 KR 359


>gi|52425603|ref|YP_088740.1| hypothetical protein MS1548 [Mannheimia succiniciproducens MBEL55E]
 gi|52307655|gb|AAU38155.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 356

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 118/357 (33%), Gaps = 3/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + YI + I  +   + L +V ++ +I+ +++   V   +         +   +P  
Sbjct: 2   MNTLDRYIGKSILGAIFATLLTLVGLSGIIKFVEQFRSVGKGSYDSMQAFLYTVLTMPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ + G SR+ +   V+  A+ L +   +    
Sbjct: 62  IETFFPMAALLGALIALGNLASRSELVVMQSAGFSRMKIGFAVMKTALPLVLLTMVIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+      +      ++       +N  +  D + +I I +   +  L  I+I    D
Sbjct: 122 GIPQT-EQFARDMRSKAISGGSMLSVKNGIWAKDGNDFIYIKRATEDANLNNIYIYSFND 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +     +     +  + +L      + S           + +             +
Sbjct: 181 NRQLQRVSHAN-KASYENGSWVLKQVNESQISADEIKTKNYLNRPWKTSLTPDKLGIFTV 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++S L +   +      +  + +   + ++L Q +   +  ++++          
Sbjct: 240 KPTSLSISGL-SSYISFLKETGQDSKKFELTYWRKLFQPISVGVMMMLALSFIFGPLRSV 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    I     F V       +  +      I  L   L  +   + L+ +K+
Sbjct: 299 TAGARIVTGICFGFVFYVINEIFGPLSLVYNVAPIIGALMPSLLFLVITWWLLSRKR 355


>gi|253686793|ref|YP_003015983.1| permease YjgP/YjgQ family protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753371|gb|ACT11447.1| permease YjgP/YjgQ family protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 358

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/355 (11%), Positives = 110/355 (30%), Gaps = 2/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + + +   +V ++ +I+ + ++  V     S       +   +P  + +
Sbjct: 5   LDRYIGKTIFTTIMTTLFMLVSLSGIIKFVDQLRKVGQGEYSALGAGLYTLLSVPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  +   +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLTMAIGEWVSP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   ++     +    +  L+ +  +D                         + 
Sbjct: 125 QGEQMARNYRSQMISGGSMISTQGGLWAKDGNDFIYIERVAGDKELSGVNIYHFDDSNKL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTIVLKA 242
             + YA S   + DR    L+  +    S   +          +           + L+ 
Sbjct: 185 LSVRYAASAEFEDDRNVWRLSQVDESDLSDGKQIGGSQTLSGEWKTNLTPDKLGVVALEP 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++  L N          +    Y+     ++   +   +  L+++            
Sbjct: 245 DALSIRGLHN-YAKYLKQSGQESSRYQLNMWSKIFAPVSVAVMMLMAVSFIFGPLRSVSA 303

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                I IS    F +       +  +   P  +  +      +     L++K++
Sbjct: 304 GSRIVIGISFGFLFYLLNEIFRPLSLVYGIPPILGAILPSSVFLCISVALLLKRR 358


>gi|240113704|ref|ZP_04728194.1| hypothetical protein NgonM_09087 [Neisseria gonorrhoeae MS11]
 gi|240116445|ref|ZP_04730507.1| hypothetical protein NgonPID1_09468 [Neisseria gonorrhoeae PID18]
 gi|240122359|ref|ZP_04735315.1| hypothetical protein NgonP_00180 [Neisseria gonorrhoeae PID332]
 gi|240125093|ref|ZP_04737979.1| hypothetical protein NgonSK_02542 [Neisseria gonorrhoeae SK-92-679]
 gi|254494458|ref|ZP_05107629.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260441667|ref|ZP_05795483.1| hypothetical protein NgonDG_11387 [Neisseria gonorrhoeae DGI2]
 gi|268599772|ref|ZP_06133939.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268602117|ref|ZP_06136284.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268680946|ref|ZP_06147808.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268683688|ref|ZP_06150550.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291045047|ref|ZP_06570755.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|226513498|gb|EEH62843.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268583903|gb|EEZ48579.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268586248|gb|EEZ50924.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268621230|gb|EEZ53630.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268623972|gb|EEZ56372.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291011050|gb|EFE03047.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 356

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/360 (11%), Positives = 116/360 (32%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +       +  + +  I +    P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGH--TGLWLKEKNSIINVRGMLPDHTLLGIKIWARND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++     +  L +           + S    +++ +         +++
Sbjct: 179 KNELAEAVEADSAVLNSDGSWQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNLMDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L      +     +  + Y   + ++L   +   +  L++     +     
Sbjct: 239 KPDQMSVGELT-TYIRHLQNNSQNTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQTTRHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F +         ++   P ++    L     + + + +I+K+  +
Sbjct: 298 NMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAG-ALPTIAFALLAVWLIRKQEKR 356


>gi|167032003|ref|YP_001667234.1| permease YjgP/YjgQ family protein [Pseudomonas putida GB-1]
 gi|166858491|gb|ABY96898.1| permease YjgP/YjgQ family protein [Pseudomonas putida GB-1]
          Length = 353

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/357 (11%), Positives = 116/357 (32%), Gaps = 6/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +A +   +  ++ + S T ++           P  
Sbjct: 1   MAKLDRYIGQSVLMAILAVLGIILGLASLFAFIDEMSDL-SDTYTVMEAGNFVLLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  ++EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  LYEMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ        +  ++ R  ++     +       L         +
Sbjct: 120 VAPVTENKAQADRSLAQGGGEAQSSKRGMWHRQGEEYVHINAVQPNGLLLGVTRYRFDNE 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +     +A+      D    +L D           ++     + + +       +T++L
Sbjct: 180 RKIVTSSFARRAQYQDD--HWLLADVRTTYFRGDHTEVVNAPQERWDVSLTPELLNTVIL 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +++ L     +  + +      Y   F  ++ Q +      L++I         R
Sbjct: 238 APESLSITGL-WDYIHYLSDQGLNNARYWLAFWTKVLQPMVTAALVLMAISFIFGPL--R 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +F  + + F    G   +    +   +   +  +    I ++  + + ++
Sbjct: 295 SVTLGQRVFTGVLVGFVFRIGQDLLGPSSQVFGFPPLLAVVIPAGICALAGVWLLRR 351


>gi|226946453|ref|YP_002801526.1| YjgP/YjgQ family permease [Azotobacter vinelandii DJ]
 gi|226721380|gb|ACO80551.1| permease YjgP/YjgQ family [Azotobacter vinelandii DJ]
          Length = 357

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 118/360 (32%), Gaps = 17/360 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E Y++    R  L+    +  I       + +   ++ T S  ++  I  Y +   
Sbjct: 1   MLLIERYVISEARRPLLVMLGILTSIFAAYSAERYLGEAANGTLSPEVVFDIVVYKVMIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     L  +  ++E+  +   G S + L   V  LA+ +++ +      
Sbjct: 61  LEVLVPVALYVSVALGLGRLYHDSEITAVAAAGMSPLRLYGAVAILALPIAVGVTALSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLA-LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
             P   +   QL  +++        L E      ++   I   + +         ++   
Sbjct: 121 GRPWAYANAYQLEQESKTELDIDHLLAERFNINAENGRMILAERVDRATDSLQDVLIFDG 180

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                ++Y +Q   I   D D   + + +G  +           ++FK   +  +   ++
Sbjct: 181 GESRTRLYRSQEARIADPDPDDPVVEMTNGTAYSLQHDGTQDKRIEFKRLNIHLQPLETN 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +         L  +   P           +E   R ++ +   I  L++I     R
Sbjct: 241 MESRRKAA--SWQTLEASAGLPEQ---------AELQWRESRGVSTFILALLAIP--LSR 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R+ +    + ++   +   + G          +    P L+L    +  + L +I +
Sbjct: 288 TAPRRGRFATLLPVTAVYAVIFYAGDICKSLVGNGSLPLTPGLWLVPLAMGLVLLALIVR 347


>gi|220935307|ref|YP_002514206.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996617|gb|ACL73219.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 367

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 122/348 (35%), Gaps = 19/348 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y++R +  +     L ++ I     + + +   +      ++LL +        L
Sbjct: 4   SILTRYLVREVLLTQAAVTLVLLLIIVGGTVARMLREAAEGRIPADVLLPMVALGSVRGL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P    +     L  + +++E+  +   G     L + + ++ + L + L +     
Sbjct: 64  ILLLPVSLFLALMLSLGRLYKDSEMAAMKACGVGPEQLYRAIAWMTVPLLVMLTVLVFWG 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFR-LDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            P     I Q+   A+       +    F           I     +        + SR 
Sbjct: 124 SPLASQGIDQIRIDAEQRSDLVGIAPGRFTESRATGQVFFIEGLAGDGNTMRGVFIRSRG 183

Query: 181 TQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +  ++  A+ G   +D    ++ ++L+DG  +R +P S++  I+ F+++ L+      S
Sbjct: 184 PEGDEVVTARRGETRVDPLTGQRYLVLHDGYRYRGAPGSQEFHILAFETHGLRVPDPTGS 243

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T   K +  + + L                ++R+E H R+   +  V+    ++      
Sbjct: 244 TRRGKVDSLSTAELW----------QSTNLSHRAELHWRIAMPVSMVLLA--ALALPLSH 291

Query: 297 ALVRQRKKIHPIFISLSISFGV--FWGFSYIIHKIEQNPYYIPILYLF 342
               +  +   +  ++ +      F   S       Q P ++ + ++ 
Sbjct: 292 TSNPRSGRFGKLTAAIGVYILYANFLILSKSWFASGQTPAWLGMWWVH 339


>gi|223936058|ref|ZP_03627972.1| permease YjgP/YjgQ family protein [bacterium Ellin514]
 gi|223895280|gb|EEF61727.1| permease YjgP/YjgQ family protein [bacterium Ellin514]
          Length = 372

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/376 (12%), Positives = 112/376 (29%), Gaps = 26/376 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+LR +           +       ++  I+    +   L  +++     +P+ 
Sbjct: 1   MRLLDRYLLRELLIPLRYCLGGFLIFWISFDLINSIHQFQEAKLHLFDVVQYYLITVPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P    +     L++  R+ E+  I   G S   +  P + + ++ S  +F     
Sbjct: 61  LVIVLPMALLLALLYTLSNHARHHEITAIRAAGISLWRICIPYVAVGLVFSAAVFAINEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNT-LQGIFI 175
             P      + +  K +        ++        +        I  YN     +    +
Sbjct: 121 WIPDSDQKAQDILDKYKPNRPDGSNKDVYRNFGIPNGRDKRTWDIGSYNLKTEIMTDPKV 180

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYT 227
                        A+              +       P            ++  +F    
Sbjct: 181 SWIDTNNLPHRLIAERAE--RTNDVWTFYNVTEFETMPDGFMGPTMKTNVVAHPEFSETP 238

Query: 228 LQT-----ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
            Q       S   ++   KA +  +  +L+    +P    +      ++ H RL      
Sbjct: 239 DQIRREIKFSKRLTSHNAKAAEVPIVDILDYLDLHPVLTKKNKWWLYTQLHGRLAAPWTC 298

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           ++   ++I      A   +R     +  S+ I F  ++    +   +    Y    +  +
Sbjct: 299 LVVVFLAIPF---GAASGRRNIFVGVASSIVIVFA-YYVLLKLGLALGTGGYVPAWVAGW 354

Query: 343 L--FCISSIFLLMIKK 356
           L  F   +  + M+ +
Sbjct: 355 LPDFVFGAAGIWMLLR 370


>gi|218778208|ref|YP_002429526.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759592|gb|ACL02058.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 353

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/351 (16%), Positives = 123/351 (35%), Gaps = 7/351 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI R + ++ L     +V I   +   ++I+   ++   L  +       IP V
Sbjct: 1   MKIISKYIARALFKNLLTILFAVVVIYVAVDFFEKIDDFMAAKIPLLTVGYFFLLRIPYV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    +    V+  M R+ E++   + G S  +L+KP+  + ++ S+FLF    I
Sbjct: 61  AAQVLPVGVLLSAMVVIGLMARHNEIIAYASGGGSSFSLLKPIAVMGVIASLFLFAFNEI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P   +   Q+    Q       +     +   + L  ++ KY P         ++  D
Sbjct: 121 IVPAAAAEANQIWY--QDVRKEGDVGTRTTWFHRNGLIGRVDKYIPETHTARDITLNYYD 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                I    +    +      L +  +   S  + DI   K     +   +      V 
Sbjct: 179 PSFKLIKRIDADDATISGTVWTLRNA-MESVSGRASDIRQHKELKVEMDFTADQLHDRVK 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           ++++ +L  L   + +           +R +   +++  L  +I  ++    A +    R
Sbjct: 238 RSDEMSLVQL-KEHIHKIESEGYKAVRFRVDLASKISFPLVCLIMSVLGGAMALRGK--R 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                  I + + ++F  +W    +   +     Y PI   +        L
Sbjct: 295 GEGLAVNIVMGMGLAFA-YWVVHSLCLSLGYAGMYSPIFSAWTANAVFAVL 344


>gi|94500484|ref|ZP_01307015.1| hypothetical protein RED65_15478 [Oceanobacter sp. RED65]
 gi|94427274|gb|EAT12253.1| hypothetical protein RED65_15478 [Oceanobacter sp. RED65]
          Length = 354

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 108/357 (30%), Gaps = 5/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI   +  S L     +  +  VI +L +++ +   T +    L       PT 
Sbjct: 1   MRKIDAYIRSSVINSILAVLFVLGMLDLVIALLNQLDNL-RDTFTFADALYYVVASAPTR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  ++EL  I   G S   ++   +  + ++ +   +    
Sbjct: 60  LYEMIPMITLIGCLVGLGSLATHSELTAIRAAGVSTGRIMLSTIKASAIMMVLSLVMGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P            A         E    +  + + Y++ +   PN  L G+ + +  +
Sbjct: 120 IVPDLERMTTSFRTIALGREVAVTNEGKGHWHKEGNNYMRFAAIEPNGVLHGMTLYEFDE 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +          +I        + +  +     +  +        +  +        +  
Sbjct: 180 NKNLTKMTHAKRAIYQREHWS-MENVRITHIEDVRTEYKAKSIAPFDTELTPETLKFVAQ 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +  D  +S L        + +      ++  F K+L Q +  +   L+ I         R
Sbjct: 239 EPKDMAISTLY-KYGQYLDAQGLGGGEFKLAFWKKLLQPISTLALVLVGISFIFGPL--R 295

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +F  + +          +            +  L    +  I+   + ++
Sbjct: 296 SVTMGQRLFTGILVGLVYKIVVDLLGPIGLLVGIGPLLANLIPIGLCMIWGSWMLRR 352


>gi|257126591|ref|YP_003164705.1| permease YjgP/YjgQ family protein [Leptotrichia buccalis C-1013-b]
 gi|257050530|gb|ACV39714.1| permease YjgP/YjgQ family protein [Leptotrichia buccalis C-1013-b]
          Length = 365

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 121/365 (33%), Gaps = 10/365 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI   +    +       FI  +  +++ +  + +S      ++    Y +P V
Sbjct: 1   MKIIDKYIYNSLILPSVFGISIFTFIMMLNVVMEVMERLFASDLPFISIIDYLFYAMPGV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +    V   ++   E++ ++ +G     +I+P     ++L++     E  
Sbjct: 61  LVQTIPMGAFLGVMLVYGGLSETNEIVAMEGSGVGLFRIIRPAFIFGVILTLIGLGLELY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSR 179
           + P+    I   + +   +   S  EE +F   ++      I + + +      F++ ++
Sbjct: 121 VNPRALKNINAQTKQILASRPSSLTEEKVFLSNEEKGFGFYIDEVSNDKATAKNFLIINK 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES---ANSS 236
                      +     D   I L   + +            +++   +   +       
Sbjct: 181 RGDNPYPIVFLAEDAKFDPGIIRLKKVKGYAFDKTGSSQVSAEYQEQEIPISTFFREKKQ 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPN--YRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +     + NL  L      N       E     + E ++R+   L       +  +   
Sbjct: 241 ELKKSRKEMNLKELEKFYKANIKNPEEKEAALKAQVEIYQRIIGPLAS---TFLCWLGVL 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLM 353
                R+  +     ISL + FG     SY    + +N     I +++  F +  + +  
Sbjct: 298 LSVGHRRSGRGISFGISLIVIFGYIGMASYAKIMVLKNDVPASIAMWVPNFVLFILCIFF 357

Query: 354 IKKKY 358
             KKY
Sbjct: 358 SIKKY 362


>gi|194097860|ref|YP_002000905.1| hypothetical protein NGK_0280 [Neisseria gonorrhoeae NCCP11945]
 gi|239998341|ref|ZP_04718265.1| hypothetical protein Ngon3_02528 [Neisseria gonorrhoeae 35/02]
 gi|240016934|ref|ZP_04723474.1| hypothetical protein NgonFA_07156 [Neisseria gonorrhoeae FA6140]
 gi|240117143|ref|ZP_04731205.1| hypothetical protein NgonPID_01565 [Neisseria gonorrhoeae PID1]
 gi|240127074|ref|ZP_04739735.1| hypothetical protein NgonS_00193 [Neisseria gonorrhoeae SK-93-1035]
 gi|268594203|ref|ZP_06128370.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268602831|ref|ZP_06136998.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268685429|ref|ZP_06152291.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|193933150|gb|ACF28974.1| Conserved hypothetical integral membrane protein [Neisseria
           gonorrhoeae NCCP11945]
 gi|268547592|gb|EEZ43010.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268586962|gb|EEZ51638.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268625713|gb|EEZ58113.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|317163630|gb|ADV07171.1| hypothetical protein NGTW08_0197 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 356

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/360 (11%), Positives = 116/360 (32%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVCALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +       +  + +  I +    P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGH--TGLWLKEKNSIINVRGMLPDHTLLGIKIWARND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++     +  L +           + S    +++ +         +++
Sbjct: 179 KNELAEAVEADSAVLNSDGSWQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNLMDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L      +     +  + Y   + ++L   +   +  L++     +     
Sbjct: 239 KPDQMSVGELT-TYIRHLQNNSQNTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQTTRHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F +         ++   P ++    L     + + + +I+K+  +
Sbjct: 298 NMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAG-ALPTIAFALLAVWLIRKQEKR 356


>gi|312131567|ref|YP_003998907.1| permease yjgp/yjgq family protein [Leadbetterella byssophila DSM
           17132]
 gi|311908113|gb|ADQ18554.1| permease YjgP/YjgQ family protein [Leadbetterella byssophila DSM
           17132]
          Length = 360

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 126/360 (35%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPT 59
           M   + Y+++    +++ +   IV +  VI  +++ +        +  I       L P 
Sbjct: 1   MTKIDRYLIKRFLTTYVFAVFIIVLVILVIDFVEKNDDFMETKPSNHAIFFDYYLNLAPY 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
               ++P    + T      M  +TE++ I  +GTS   L+ P    + +++I+ F+   
Sbjct: 61  WANYISPLMIFISTVFFTAKMASHTEIIAILGSGTSFRRLMLPYFIGSGIVAIYSFVMVG 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
              PK      +   K      F    +       +      S  N +NT     +    
Sbjct: 121 WFLPKANVPRIEFENKYIHNDFFFTGRDIHLAVQKNVYAYLSSYDNSSNTAYDFTLEKVE 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK--SPISKDISIMKFKSYTLQTESANSST 237
           + +  +   A+  + D   +   L D  + +   S        +     +++   ++   
Sbjct: 181 NNRLVEKLSARRATYDDSLKKWKLYDYNIRKIGISKDEMTYEAITPLDTSIKLYPSDFGN 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +     +S L +      +   E +ETY+ E+++R       +I  ++ ++ + ++A
Sbjct: 241 SKNRQETMTISQLEDYIDLINSRGAEGVETYKIEYYQRFATPFAVIILSIMGLIVSARKA 300

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 +I   F+   +    +     I      NP     L   +F I S+ +     +
Sbjct: 301 RGGVGLQIAIGFVLAFLYIIFYILSKGIAEAGSMNPILAVWLPNIVFSIISVVMYFTVPR 360


>gi|307543948|ref|YP_003896427.1| permease [Halomonas elongata DSM 2581]
 gi|307215972|emb|CBV41242.1| K07091 [Halomonas elongata DSM 2581]
          Length = 361

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/368 (13%), Positives = 120/368 (32%), Gaps = 22/368 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R I ++       ++ +    + ++  +  +     ++IL  +  + +P  L 
Sbjct: 2   IIFRYLTREILQTMAAVAGVLLLVIMGSRFIRYFSNAAEGEIPVDILGTLMLFHLPGFLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +     L  +  N+E+ ++   GTS   L+   L  A +++I + +    + 
Sbjct: 62  LILPLAFFLGILLALGQLYLNSEITVLVACGTSPNRLLWVSLLPATVVAILVGLCSLWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI---VDSR 179
           P      + +  +    L F  L    F              +                R
Sbjct: 122 PAGALQNEIILDEQSSQLDFGVLAPGRFQNFGGGRVAYTEALSEQERRLEGVFISERQRR 181

Query: 180 DTQTHKIYYAQSGSIDL------DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           D  T +    ++             + ++L+DGE +   P       + F +Y ++   A
Sbjct: 182 DDGTPQTVVTRAAEGYQTIDEETGSRFLVLSDGERYSVEPGRAVAEHLSFGTYAVRLSRA 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            +    L   +   +  L  + + P           ++   RL       I  L+++   
Sbjct: 242 AAERDDLDDPEYATTPALFADGSAPA---------MAQLQWRLGLPPMVFILTLLAMPL- 291

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLL 352
               +  ++ +   +  ++ +           +  I +  +   + ++        I LL
Sbjct: 292 --SRVNPRQGRFAKLLPAIFLYVAYLSLLLAALDAIARGAWPTTLGMWPIHAAFLVIGLL 349

Query: 353 MIKKKYTK 360
           M  +   K
Sbjct: 350 MTLRAQRK 357


>gi|269103492|ref|ZP_06156189.1| putative permease [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163390|gb|EEZ41886.1| putative permease [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 366

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/356 (11%), Positives = 111/356 (31%), Gaps = 21/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R   +S       +  +    + ++ +   +  +   +++  + G  +P++  
Sbjct: 2   IIVRYLTRETLKSQFAVLFVLFLVFISQKFIRILADATDGSIPSDLITTLMGLYMPSMAL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     L++  L LA++       +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGMGNKFLLRAALSLALITGALATFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       Q+    +       L +  F    +   +       +       +  ++   
Sbjct: 122 PWAAEKEAQVMESVKADSGLDLLVKGQFQAAPNGQGVVFVNDITDKGKTLKHVFVAQLKG 181

Query: 183 ----THKIYYAQSGSIDLDRQAII---LNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                  +  A  G +   +       L DG  +   P   D SI  F+ Y         
Sbjct: 182 KDSIRPSVLVADHGYVSEHKDGRQILDLKDGTRYEGIPTRLDYSITDFEGYQAVIGQRKV 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  +      L+                 ++EF  R++     +   L+++V    
Sbjct: 242 KEERRDWDAMPTLELM----------QRAEPEAQAEFQWRMSL---ILCIPLLTMVVVPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            A+  ++ +   +  ++ I    F   S       ++    P++ L+   +  + +
Sbjct: 289 SAVNPRQGRFAKLVPAVLIYLAYFLAIS-AGKSALEDGTLPPMIGLWSINLVILLI 343


>gi|119357818|ref|YP_912462.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
           266]
 gi|119355167|gb|ABL66038.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
           266]
          Length = 358

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 115/359 (32%), Gaps = 6/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI R    SF  +    + +  +I +++ ++           +       IP+ 
Sbjct: 1   MKLLDRYIFRQFAVSFFFASAAFIALFILISMVENLDEFIDLGIGPGKITGYYLSSIPST 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L + +P    +    V   ++  +EL  I + G S   L+KP +    ++     ++   
Sbjct: 61  LMVTSPVAALLSAILVAGKLSAMSELSAIKSAGISLKQLLKPFVLGGTIICSINMLNSCW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P   +        +           N+      +  + I +   N +      I    
Sbjct: 121 LGPAAAADKIAFERTSFNRTQNLQANSNMHILESGNRIVSIGELLINQSKGLHISIEQFN 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS-IMKFKSYTLQTESANSSTI 238
            T+      A     D +    +L +      +  ++         +  +     +   +
Sbjct: 181 GTRLSTRMDAPEMIFDQNVHKWVLKETSSRSFTGNNEQYHLNPGNDTLGMAMSLKSLRKL 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            ++ ++ N+                 L+  + + H ++      +I  LI +       +
Sbjct: 241 NVQPDEMNILEHYRYTREKDKAGFSGLDRAKVKLHAKIALPFASLISILIGVPL---STI 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            ++  K     I+L I F ++ G    I  I       P +  +L  +  + +  I  K
Sbjct: 298 RKRGGKAAEFSITLFIGF-LYLGLQKTIATIGYTGLLEPWIAAWLPNMLFLIVAGILYK 355


>gi|294084200|ref|YP_003550958.1| hypothetical protein SAR116_0631 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663773|gb|ADE38874.1| hypothetical membrane spanning protein [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 364

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 136/355 (38%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           F +YI   + R+  +  + ++ I W+ Q ++ + LV +    +   L +S  +IP  L +
Sbjct: 3   FNIYIFNQLFRATCVISMVLIGIMWLFQTIKLLELVVNKGAPIFDFLLMSITVIPLWLTI 62

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +    V   +  + EL ++   G S   L K  + L +LL+  L+ +   + P
Sbjct: 63  ALPIAGFVAVNWVFHRILADRELTVMQAVGLSPAQLAKAPIALGMLLTSVLYFNSVYLLP 122

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                 K L    +  +    L++ +F  +   L + I     N+ +  +FI D+R    
Sbjct: 123 TSFGIYKDLQFNLRNGIPVILLQDGVFTEVVPGLTMFIGSREENDVVSDVFIQDTRTIDK 182

Query: 184 HKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
             I  A++G           IL +G+    +   +  +++ F++++L   +         
Sbjct: 183 TIILTAENGKFVGKDYHPTLILGNGQRLEVNSDGESGALLLFETHSLSLVTNEKKPSERI 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
           AND N   + N      +   +      +E H R+   +  +   ++ I       L R+
Sbjct: 243 ANDMNEDSISNLLDAKKSPYADYAFQRIAEGHYRIASPVLALALIMMVIAITLHGQL-RR 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              +    I++S   G+              P+   ++++       I  + + +
Sbjct: 302 DLWLRRSLINISCCLGLIVALILARSWTITMPHLWILIHIVTTLPILICGIALAR 356


>gi|148239646|ref|YP_001225033.1| permease [Synechococcus sp. WH 7803]
 gi|147848185|emb|CAK23736.1| Predicted permease [Synechococcus sp. WH 7803]
          Length = 388

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/375 (12%), Positives = 132/375 (35%), Gaps = 21/375 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + +++  +    L +      ++  +  + + +  +  S   + I +++    +P+ L
Sbjct: 18  LLDRWLIGELLSPLLFAIAAFTVVSLSVGVMFELVRQIVESGLPVAIAVQVLLLRLPSFL 77

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +       M T    + ++ N+EL  + + G +   +I P L +A+L+S   F+  +++
Sbjct: 78  VISFAMATLMATLLAYSRLSANSELTALRSVGVTATRMIVPALIVALLMSGLTFVFNDVV 137

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI------------KISKYNPNNT 169
            P+   + +    +A      +    N+ +     +                ++   +  
Sbjct: 138 VPRANRSAEITLRRALGKAIATEKGSNIVYSRFGRIQDPDGSSSKGLAQLFYARQFKDGV 197

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           + G+ ++D       ++  A     +  +      DG++   +P     S   F  Y   
Sbjct: 198 MSGVTVLDFTRAGFTQMLVADRAVWNERQAKWQFFDGQILTLTPSGSTTS-ADFDQYLYP 256

Query: 230 TESANSS--TIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLFPVIFG 286
             +A      +   AN+  ++  L            +     +    ++ T  +  ++FG
Sbjct: 257 LSAAPIRIAQLPKDANNMTVAEALRARELLEQAGDIKEARRLQVRIQEKFTLPMACLVFG 316

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFC 345
           LI      K     +  +     IS+ +   V++  S+    +       P+L  +    
Sbjct: 317 LIGASLGAKP--NSRTSRSQGFGISVVL-ILVYYVLSFSFSSLGVKGTLPPLLAAWSPVL 373

Query: 346 ISSIFLLMIKKKYTK 360
           IS      + ++ ++
Sbjct: 374 ISLAGGGWLLRQASR 388


>gi|104783410|ref|YP_609908.1| hypothetical protein PSEEN4441 [Pseudomonas entomophila L48]
 gi|95112397|emb|CAK17124.1| conserved hypothetical protein, putative membrane protein
           [Pseudomonas entomophila L48]
          Length = 353

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 114/357 (31%), Gaps = 6/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +A +   +  ++ + S T ++           P  
Sbjct: 1   MVKLDRYIGQSVLLAILAVLGIILGLASLFAFIDEMSDL-SDTYTVMDAGSFVLLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  ++EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  LYDMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ        +  ++ R  ++     S       L          
Sbjct: 120 VAPVTENKAQADRSLAQGGGEAQSSKRGMWHRQGEEFVHINSVQPNGLLLGVTRYRFDEQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +     +A+       +   +LND           ++     + + +       +T+VL
Sbjct: 180 RKIQTSSFARKAQYHEGK--WVLNDVATTYFRGDHTEVVKAPEEVWDVSVTPELLNTVVL 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +++ L     +  + +      Y   F  ++ Q        L++I         R
Sbjct: 238 APESLSITGL-WDYIHYLSDQGLNNSRYWLAFWTKVLQPAVTAALVLMAISFIFGPL--R 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +F  + + F        +    +   +   +  +    I ++  L + ++
Sbjct: 295 SVTLGQRVFTGVLVGFVFRIAGDLLGPSSQVFGFPPLLAVVIPAGICALAGLWLMRR 351


>gi|119476403|ref|ZP_01616754.1| predicted Permease [marine gamma proteobacterium HTCC2143]
 gi|119450267|gb|EAW31502.1| predicted Permease [marine gamma proteobacterium HTCC2143]
          Length = 374

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/371 (14%), Positives = 122/371 (32%), Gaps = 26/371 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I  S       ++ I    + ++ +   ++   S +ILL I  Y +P+ L 
Sbjct: 2   ILFRYLAKEILISLFAVSATLLVIVMSGRFVKYLAQAAAGKLSPDILLNIMVYRLPSFLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M   +E+ ++   G S   L    L  +I +++ +        
Sbjct: 62  LVLPLSLFIAILLAYGRMYVESEMTVMAACGLSDRRLAVYTLVPSICVAVVVGYLSLYAS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD-- 180
           P     ++++    Q +     L E  F   +    +   +   N+      +  +    
Sbjct: 122 PIGIGKVQEIFEDTQNSSGLELLIEGRFRVDEQSGRVTYVESLDNDVGIMQDVFSAEQSL 181

Query: 181 ----TQTHKIYYAQSGSIDLDRQAI----ILNDGEVHRKSPISKDISIMKFKSY-TLQTE 231
                +   + +A+ G+I +         +L +G      P      I +F  Y  L  +
Sbjct: 182 GSEGEEQLTVIFAEQGNIQMSDDQQSRYLVLRNGYQSVGQPGGLRYRISQFDEYGQLVRD 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
            A   T+  +A+ +    LLN            L   ++    R++  +   +  LI+  
Sbjct: 242 PAVQKTLYKRADARTTEQLLN----------STLLEDKATLQWRMSLVILVPVIALIAQA 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY--IPILYLFLFCISSI 349
                    +R +   +  +  I        +     I +      + + ++ L  +   
Sbjct: 292 L---SRTSHRRGRYVKMLPAFIIYITYLVALNAARDAIGKEKISSDLGMWWVHLVFLGLG 348

Query: 350 FLLMIKKKYTK 360
             L+    + +
Sbjct: 349 ITLLFGGDWLR 359


>gi|260655096|ref|ZP_05860584.1| putative membrane protein [Jonquetella anthropi E3_33 E1]
 gi|260630207|gb|EEX48401.1| putative membrane protein [Jonquetella anthropi E3_33 E1]
          Length = 339

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 119/340 (35%), Gaps = 10/340 (2%)

Query: 22  FIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM 80
               I     +L +  +L+     SL +  ++  Y +P V+ +  P    +       +M
Sbjct: 2   AFSLIMVAGGLLFKLADLIIERGVSLAVAGRLFVYELPGVVVLTLPMSCLLGALLGFGAM 61

Query: 81  NRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLAL 140
           + N+E++ +  +G S   +  PV+F A+++SI   I    + P  +   + +        
Sbjct: 62  STNSEVVALKASGISFWRMNWPVIFWAVIISILSLILNETLVPLGQRAAENVMTFEVAKQ 121

Query: 141 TFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA 200
               +++ +F +      + + K +P++      IV    +              +    
Sbjct: 122 KPVLIKQEVFLQAPGGRVVYVGKLDPSSGSMSNVIVQELASGKLTRITVAPNGQWVSG-I 180

Query: 201 IILNDGEVHRKSPISKDISIMKF--KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNP 258
             L DG+V+          +  F  +   +       +   +K +D + S L        
Sbjct: 181 WYLTDGDVYEMKEPDGVAHLFHFAKQELPISLTPRQIANTSVKPDDLSASDLYR-YIAAM 239

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
             + + +     +FH +L      VI  LI        +  R   +      S+ I F +
Sbjct: 240 KMQGKDISALWVKFHFKLAVPWACVILSLIGTSLGV--SHQRHGNRSVGFGQSILIVF-L 296

Query: 319 FWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
           ++    +   + Q     P++  +L         + +I++
Sbjct: 297 YYVLMSVGKSLGQTNALPPVVAGWLPNIIFLVAAVFLIRR 336


>gi|257468007|ref|ZP_05632103.1| hypothetical protein FulcA4_01647 [Fusobacterium ulcerans ATCC
           49185]
 gi|317062293|ref|ZP_07926778.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313687969|gb|EFS24804.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 358

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 124/359 (34%), Gaps = 7/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YIL  +    L       FI  +  I+  +  +     S+  +++I  + +P +
Sbjct: 1   MKIIEKYILEEVKMPILFGISLFTFIFLIDIIVAMMENIIVKGISIIDIMRILSFYLPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      +   R +E   + + G     ++KP+  LA   ++F+F  +  
Sbjct: 61  LSQTIPMGIFLGVMLTFSKFTRTSEATAMSSIGMDLRGIVKPIFILACATTLFIFFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+  S ++ ++ K         L+E  F    ++  + I +    + +    ++  ++
Sbjct: 121 IIPRSFSKLQYITTKIAYENPVFQLKEKTFIDEVEEYNLYIDRIEGKDRVAQGVLIFQKN 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
                              ++++ D + +      K+    +F    +  ++        
Sbjct: 181 EDVEFPTVLVGKEAYWKDSSMVITDSKFYDFDKDGKEKLRGEFDDKKVPLDAYFDGIDIK 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V      ++S LL    + P         Y+ E +++L   L  ++  L+ +  +     
Sbjct: 241 VKDIEAMSISMLLKEMKDLPQNEKIP---YKVEINRKLALPLSTIMLSLLGVFISIGHHR 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             +        + +            + ++ +  P+    ++     +  +     KKK
Sbjct: 298 SGKGANFALSLVVIFSYITFLNIGMVMANRGKIPPFV--GVWTPNIILFLVTFYFYKKK 354


>gi|257466753|ref|ZP_05631064.1| hypothetical protein FgonA2_04885 [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 361

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 122/363 (33%), Gaps = 12/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  ++Y+ +   + F  S    + I  + Q+ + +  V+    S   +    G L+P +
Sbjct: 1   MKKLDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYVNEGQLSPGQIPLFIGNLLPGI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +     +  M  N E++ +  +G     L++  +F++ L+S+ +F   + 
Sbjct: 61  IINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYLNDR 120

Query: 121 -IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--- 176
                     +    +          +EN FFR  +  Y+   K     T     +    
Sbjct: 121 VYPGSVVRNRELRGKEDVEEREVPKEKENAFFRNVEGRYVYYMKKINRETGIMDHVEVLD 180

Query: 177 -DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                 +  ++  A+ G  D  R+  +  D  ++     + +      +   +       
Sbjct: 181 MSENFDKIERMITAKKGRYDFKRKLWVFEDAHIYYPDTDTVEARAFIQEQKYMDEPEYFI 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S   +    + ++ L        +     +    SE  KR +      +   + +     
Sbjct: 241 SLSNIIPKQKTIAEL-KKAIKEGSATGNEIREILSELGKRYSFPFASFVVSFLGLAL--- 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLM 353
            +   +   I  I IS+ + +  +         +  N Y  P L  ++      +  L  
Sbjct: 297 GSHYVRGMSILNIVISILLGYAYYLV-EGAFEALGMNGYLNPFLSGWIPNLLFLAAGLYF 355

Query: 354 IKK 356
           +++
Sbjct: 356 MRR 358


>gi|298369120|ref|ZP_06980438.1| permease, YjgP/YjgQ family [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298283123|gb|EFI24610.1| permease, YjgP/YjgQ family [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 356

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/360 (11%), Positives = 123/360 (34%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI+R +    + + L  + +    +++  +  V   + +   +++     +P  
Sbjct: 1   MKLIPRYIIRQMSVMAVYALLAFLALYSFFEVINEMGDVGKGSYTGAKMVQYVLMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +    ++ ++   +    
Sbjct: 61  AYELMPLGVLIGGLIALSQLASGSELTVIKASGMSTKRLLAVLSQFGLIFALATVVLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +    +  +  + +  I + +  P++TL G+ I    D
Sbjct: 121 VAPDLSRRAENMKASAINGRISA--GASGLWMKEQNNIINVREMLPDHTLLGVKIWQHDD 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       +      +  L +            +S    + + +  +S     +++
Sbjct: 179 RYQLASAAEAESAALNPDGSWQLKNVSRSVLKGEQVAVSSESSQRWPVALQSGLLDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  ++S L      +     +  +TY   + ++L   +   +  L++     +     
Sbjct: 239 DPDQMSVSELT-TYIAHLKSNHQKTDTYSVAWWRKLMYPIAAWVMALVAFAFTPQTTRHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F           ++   P ++  + L     + + + +I+++  +
Sbjct: 298 NMGLKLFGGICLGLVFHFAGRLFGFTSQLYSVPPFLAGM-LPTVIFALLAVYLIRRQERR 356


>gi|262376976|ref|ZP_06070202.1| permease YjgP/YjgQ family protein [Acinetobacter lwoffii SH145]
 gi|262308014|gb|EEY89151.1| permease YjgP/YjgQ family protein [Acinetobacter lwoffii SH145]
          Length = 366

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 119/361 (32%), Gaps = 17/361 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +       IL  I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDAGILFSIIGYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + ++ + ++  I          
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVMNGSGVSRHQLARLLVPMTLVFLIAQAGLMLWAA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      + L+    +   F  +    F                   L+ IF     + +
Sbjct: 122 PWGIRQFEALTTSQAVRTGFDLVRPKEFISSGPYTIYAGDLSEDRKNLKDIFFYQRAEKE 181

Query: 183 THKIYYAQSGSIDLDR------QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                   +               + L +G  +   P +   +  +F+SY L+ ES   +
Sbjct: 182 GKPDVMILAQEATRIEVPNDAANVVDLVNGRRYEIYPGTPQYTQAEFESYRLRLESDEEA 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  +   +  L  N  +P            E   R+      +I  ++++      
Sbjct: 242 QFASTEVEALPTSQLWQNRQDPVVAS--------ELGWRVFVPFAILIALILAVAL---S 290

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            +  ++ +   +F +L I   +      +  +I +    I    L L   +    L  +K
Sbjct: 291 EVSPRQGRYLKLFPALMIFASLIVALMAVKTRISKEEMGIWAYPLILIAYAIAGALFSRK 350

Query: 357 K 357
           +
Sbjct: 351 Q 351


>gi|260062387|ref|YP_003195467.1| hypothetical protein RB2501_12362 [Robiginitalea biformata
           HTCC2501]
 gi|88783950|gb|EAR15121.1| hypothetical protein RB2501_12362 [Robiginitalea biformata
           HTCC2501]
          Length = 360

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 128/360 (35%), Gaps = 8/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YIL+    +F +  L  V I  ++ + ++I  +  +   L  +L   G     +
Sbjct: 2   LTIIDRYILKKYLSTFGLMLLLFVPIGIMLNLAEQIGKMIDNEAPLVEILIYYGNFTIYI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + M  NTE++ I ++G S    ++P    A ++++ +F+    
Sbjct: 62  GSLLFPIFLFLSIIFFTSKMANNTEIVAILSSGVSFGRFLRPYWIGASIIAVLMFLMGMF 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P       +   K     +   +  N+F +L +  YI +S ++P   +   F  +   
Sbjct: 122 IVPSASKGFNEFKFKYLKKGSKDRVTSNIFNQLGESDYIYVSSFDPARQIGYNFTYEHFG 181

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                 Y   S +I    +     L           ++ +   +        +  + + +
Sbjct: 182 EDGELEYKISSANIRWLEEDSLYRLTSYTRRNLRGDTEIVETRRRLDTLFAFQIDDLTPV 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A  +NL  L     +        + TY    +KR    +   +  +I +      ++
Sbjct: 242 SYIAETKNLFELNQFIADQRRKGASNVNTYVMVKYKRWALPVTAFVLTIIGVAV---SSI 298

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY--LFLFCISSIFLLMIKK 356
            R+      +   + ++F   +         EQ+  + P+L   +       +   M++K
Sbjct: 299 KRRGGMGVNLAFGIGVAFIYIFMDKVFGTLAEQSG-FPPLLAVGIPNIFFLVLGYFMLQK 357


>gi|240079726|ref|ZP_04724269.1| hypothetical protein NgonF_00194 [Neisseria gonorrhoeae FA19]
 gi|268595872|ref|ZP_06130039.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|293399674|ref|ZP_06643826.1| hypothetical protein NGNG_01869 [Neisseria gonorrhoeae F62]
 gi|268549660|gb|EEZ44679.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|291609925|gb|EFF39048.1| hypothetical protein NGNG_01869 [Neisseria gonorrhoeae F62]
          Length = 356

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/360 (11%), Positives = 116/360 (32%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +       +  + +  I +    P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGN--TGLWLKEKNSIINVRGMLPDHTLLGIKIWARND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++     +  L +           + S    +++ +         +++
Sbjct: 179 KNELAEAVEADSAVLNSDGSWQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNLMDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L      +     +  + Y   + ++L   +   +  L++     +     
Sbjct: 239 KPDQMSVGELT-TYIRHLQNNSQNTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQTTRHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F +         ++   P ++    L     + + + +I+K+  +
Sbjct: 298 NMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAG-ALPTIAFALLAVWLIRKQEKR 356


>gi|255531333|ref|YP_003091705.1| permease YjgP/YjgQ family protein [Pedobacter heparinus DSM 2366]
 gi|255344317|gb|ACU03643.1| permease YjgP/YjgQ family protein [Pedobacter heparinus DSM 2366]
          Length = 367

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 104/362 (28%), Gaps = 6/362 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILL-KISGYLIPTV 60
           K  + YI+     +FL +    V I  +  + ++++   S+  +   ++       IP  
Sbjct: 9   KILDWYIISKYLGTFLYTLTLFVVIIIIFDLSEKLDDFLSANLTFWQVISLYYAGSIPYY 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M++P    +        M   TE++ I + G S    + P    A ++      S   
Sbjct: 69  VNMLSPLINFIAVIFFTAKMADQTEIVPILSGGVSFNRFLLPYFVSAFVIFAVNLASNLY 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P                   S          D+      +  N + T     + + + 
Sbjct: 129 ILPYTNQLKNTFENTYVKKNDPSSKSNIHMKLDDNTYIFMDNFDNKSKTGTKFSLDNFKG 188

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--FKSYTLQTESANSSTI 238
               K   A     D  +++  L +  +   + + +         K   L     + S  
Sbjct: 189 DVLTKKLIADEIKWDSLKRSWKLTNYSIRYVNGLKETFVSGTSLTKDTVLDMRPDDFSAY 248

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                + +   L             +      E +KR    L   +  LI +      + 
Sbjct: 249 DNVFENLSNKELSEKIRKERIRGSGIWNDLLFEQYKRYLHPLSAFVLTLIGVAL---SSR 305

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +     P+ I + +SF       +      +      +  +       +    + +K 
Sbjct: 306 KVRGGVGLPLGIGILLSFAYIVFNQFAKMFSLKGGMPPLLAVIAPTLFFGLLGFYLLRKA 365

Query: 359 TK 360
            K
Sbjct: 366 PK 367


>gi|114319721|ref|YP_741404.1| permease YjgP/YjgQ family protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226115|gb|ABI55914.1| permease YjgP/YjgQ family protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 360

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/359 (12%), Positives = 111/359 (30%), Gaps = 5/359 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + Y++  +  S L++ + I+ +  V   +     + ++       L       P+  
Sbjct: 3   RLLDRYLIITVVASALVALVVIMSLDLVFSFVDEGGDIGTADYGPLSALAYVLLSSPSRA 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF   +     L ++    EL ++   G S + + + V    ++L++        +
Sbjct: 63  YEAFPFATLIGALMGLGALAARNELTVMRAAGVSVLQIARAVAAGGLVLALIAMAMGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P       +L A A            L+ R            +P +             
Sbjct: 123 VPPAERAATELRASAMARDVGISGAGGLWARDGGQFIEVRRARSPAHLEGLTIYHFEERD 182

Query: 182 QTH---KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                 +   + S ++  D + I+   GEVH  +       +   K +      A    +
Sbjct: 183 GEPMTLRRVLSGSEALFRDGRWILREPGEVHLHADGISVADLGDEKVWESALSPAVLDVV 242

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V+     +++ L                 +R  F  ++   +  +   L++I        
Sbjct: 243 VVDPESLSMADL-RTYIGYLEANELDSGEWRLAFWVKVATPISTLAMLLLTIPLVFGAVR 301

Query: 299 VRQRKKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                +   I + + ++F +     ++        P    +L  F F  + I  ++  +
Sbjct: 302 STGAGQRIFIGVLIGVAFFLVNRMLNHAGVVFGLPPSASALLPAFAFLAAGILGILKVR 360


>gi|325278209|ref|ZP_08143702.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
 gi|324096649|gb|EGB95002.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
          Length = 371

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 116/353 (32%), Gaps = 26/353 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   +       +L  I G+ +P  L 
Sbjct: 2   IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLFLIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A L+++ +      + 
Sbjct: 62  LILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMAPAALVALLVAWLSLSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR--LDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P   + ++Q+ A+      F  L    F        +       +    L G+FI + R 
Sbjct: 122 PLGVAQVQQIIAQQDTLTEFDTLVPGRFQMLRDGSRVTYTEQLSDDRVKLGGVFISEKRF 181

Query: 181 TQTHKIYYAQSGSIDLDRQAII---------LNDGEVHRKSPISKDISIMKFKSYTLQTE 231
            Q      A S  +       I         L +G  +  +P   D   +K+ +Y +   
Sbjct: 182 NQDKTKDRAPSVLVAEKGHQEIQADGNRYLVLENGYRYDGNPGQADYRAIKYDTYGVLLP 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               +  V +        L            +     R+E   RL+  +   +  L+++ 
Sbjct: 242 KPEVAEEVTEREAIPTLDLF----------GKTDLRERAELQWRLSLPILVFVVTLLAVP 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLF 342
                 +  ++ +   +  ++ +          +   +   + P  + + ++ 
Sbjct: 292 L---SRVNPRQGRFLKLLPAILLYMAYLTMLISVRGALEKGKLPIALGMWWVH 341


>gi|297537469|ref|YP_003673238.1| permease [Methylotenera sp. 301]
 gi|297256816|gb|ADI28661.1| permease YjgP/YjgQ family protein [Methylotenera sp. 301]
          Length = 356

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 123/360 (34%), Gaps = 8/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L+ I  + LM  L ++ +     ++Q ++ +   +  L  +L       P  
Sbjct: 1   MKILNKYLLKEIVSNVLMVMLALIAMFSFFDLIQELDALGKGSYGLGKILLFVLLSAPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +     L  + R +EL+++  +G S   +   +L +  + +I  F+   +
Sbjct: 61  VYDVMPVAVLVGCMYSLGQLARYSELVVLRVSGLSIFDIAVLLLKIGAIFTIITFLIGEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T +++  KA  ++        L+ +  +              L        ++
Sbjct: 121 VTPFSEKTAQRMRIKATDSVVAQEFRSGLWVKDGNSFINVEEVLPDATLLNIHIFDFDKN 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +      A++G    +  +  L D         S  +S     ++         + +++
Sbjct: 181 AKLISTRNAKAGEFKHE--SWKLKDVTDTSFDKDSVKVSQSLEATWHSLIRPELLNVLLI 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L     N+ +   +    Y      ++   L  ++  ++++         R
Sbjct: 239 MPEKMSAWNLY-TYINHLSINKQKTTRYEVALWAKMIYPLACMVMVVLALPFGFV--QQR 295

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMIKKK 357
                  IF+ + +            H    N   P +  I+   +F ++ + +L   ++
Sbjct: 296 AAGASTKIFVGIMLGVMYQILNRVFAHLGLLNDWPPLFSAIMPTIMFLMAGVAMLFYVER 355


>gi|150005671|ref|YP_001300415.1| hypothetical protein BVU_3161 [Bacteroides vulgatus ATCC 8482]
 gi|212693333|ref|ZP_03301461.1| hypothetical protein BACDOR_02845 [Bacteroides dorei DSM 17855]
 gi|254884104|ref|ZP_05256814.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|265753721|ref|ZP_06089076.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|294776587|ref|ZP_06742057.1| putative membrane protein [Bacteroides vulgatus PC510]
 gi|319640869|ref|ZP_07995580.1| hypothetical protein HMPREF9011_01177 [Bacteroides sp. 3_1_40A]
 gi|149934095|gb|ABR40793.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|212664098|gb|EEB24670.1| hypothetical protein BACDOR_02845 [Bacteroides dorei DSM 17855]
 gi|254836897|gb|EET17206.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|263235435|gb|EEZ20959.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|294449575|gb|EFG18105.1| putative membrane protein [Bacteroides vulgatus PC510]
 gi|317387506|gb|EFV68374.1| hypothetical protein HMPREF9011_01177 [Bacteroides sp. 3_1_40A]
          Length = 390

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 126/362 (34%), Gaps = 7/362 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  ++YI++    ++  +   I+ IA V  + + I+   ++   L  I+       IP  
Sbjct: 33  KRLDIYIIKKFLGTYFFAIALIISIAVVFDVNENIDRFINNKAPLKAIVFDYYMNFIPYF 92

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ + +TG S   +++P +  A ++S+  F     
Sbjct: 93  SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIISVVTFGLGAY 152

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK   T      + +      Y+           +       N N T     +    D
Sbjct: 153 VIPKGNVTRLDFEDRYKKKKKQEYVRNVQLEVDSGVIAYIERYENYNKTGYRFSLDKFDD 212

Query: 181 TQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +      A+S + D        + +  +     + + I+        ++ E  +   + 
Sbjct: 213 KKLVAHLTARSVTYDTASVHKWTIKNYMIREMEGMREKITRGDRLDTIIKMEPQDFLIMK 272

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +        L              ++ +  E+++R+       I   I +      +  
Sbjct: 273 GQQQTMTSPELKEYIDKQKRRGFANIKEFEIEYYQRIAMSFAAFILTTIGVSL---SSRK 329

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL-LMIKKKY 358
            +      + + L++SF  +  F  +      N    PI+ +++  I   F+ + + +K 
Sbjct: 330 MKGGMGLHLGVGLALSFS-YILFQTVSATFAVNGNTPPIIAVWIPNILYTFIAIYLYRKA 388

Query: 359 TK 360
            K
Sbjct: 389 PK 390


>gi|148265755|ref|YP_001232461.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
 gi|146399255|gb|ABQ27888.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
          Length = 359

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 117/360 (32%), Gaps = 8/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F  YI     +   +     + I  V+  L++I   + +      +       +P +
Sbjct: 1   MKIFSRYIATAYAKMLGLCLGAFIAIYLVVDFLEKIGRFARANAEWKFIALFFLTRVPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +         M T   L  ++ N+EL  +   G S   +  P+  +A  +S+        
Sbjct: 61  ICQTASMAVLMATLLTLGMLSLNSELTAMRGCGLSLARITAPIFAIAFAVSLSTLFVSEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+C +  + +        + S           D+ YI  ++     T     I   + 
Sbjct: 121 VMPRCNTQGQYIREVLIDKKSPSTFFRQQNIWHKDENYILKARLFDPATGNLKGITLWKT 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS--YTLQTESANSSTI 238
               +       +    R    L    V R+      IS   F +    L  ++A+   +
Sbjct: 181 GTEMEPQQRIEATQGELRGNDWLFRDVVIREMAGGNIISTKSFPALLVKLNLKAADLKVV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              +++  +  L++   +           + ++ H R++    PVI   I I  A +   
Sbjct: 241 GKFSDNMGIRELIS-YCDKLRKGGYDPTRFLAQMHSRISLSFAPVIMAFIGIPFAMRGG- 298

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIFLLMIKK 356
            R       I  SL I F  F   S I+    Q     P++  +        I +    K
Sbjct: 299 -RSSGIALGIGTSLGIGFAYFIINSVILS-FGQAGVLPPLVSAWATNLIFIMIGIWFGMK 356


>gi|59801588|ref|YP_208300.1| hypothetical protein NGO1229 [Neisseria gonorrhoeae FA 1090]
 gi|59718483|gb|AAW89888.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
          Length = 356

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/360 (11%), Positives = 115/360 (31%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +       +  +    I +    P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGN--TGLWLKEKTSIINVRGMLPDHTLLGIKIWARND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++     +  L +           + S    +++ +         +++
Sbjct: 179 KNELAEAVEADSAVLNSDGSWQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNLMDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L      +     +  + Y   + ++L   +   +  L++     +     
Sbjct: 239 KPDQMSVGELT-TYIRHLQNNSQNTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQTTRHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F +         ++   P ++    L     + + + +I+K+  +
Sbjct: 298 NMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAG-ALPTIAFALLAVWLIRKQEKR 356


>gi|304413751|ref|ZP_07395195.1| inner membrane component LptG of LptABCFG lipopolysaccharide
           transporter [Candidatus Regiella insecticola LSR1]
 gi|304283842|gb|EFL92236.1| inner membrane component LptG of LptABCFG lipopolysaccharide
           transporter [Candidatus Regiella insecticola LSR1]
          Length = 358

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 119/354 (33%), Gaps = 2/354 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I  + LM+   +V ++ +I+ ++++  +   + S+      +   +P  + +
Sbjct: 7   LDRYIGRNILHTILMTLFMLVSLSGIIKFIEQLRKLGEGSYSVLGAGIYTLLSVPKDIEI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++   +EL+++  +G +R  +   V+  AI L +   +    + P
Sbjct: 67  FFPMAALLGVLFGLGTLASRSELIVMQASGFTRTQIASAVMKTAIPLVLLTMVIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                I        +        ++  +  D + ++ I+    +NTL G+ I        
Sbjct: 127 -LSERIASDYRTKMIFGGAILTTQSGLWARDGENFLYINHILNDNTLSGVNIYHIDQENR 185

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
                  + +   D    +    E         + S      + +         + +  +
Sbjct: 186 LLSVRYAATATFKDNVWQLSQVDESDLSDAKKINGSKTLTGEWKINLTPDKLGIVSVDPD 245

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
              +S L            +    Y+     ++   L   +  L+++             
Sbjct: 246 SLPISGL-RDYIQYLKQNKQESLRYQLIMWNKIFSPLSVAVMMLVALSFIFGPLRTVTMG 304

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
               + I++   F V       +  + + P  I  L   L  +   + L++K++
Sbjct: 305 VRVMVGIAVGFLFYVLNQIFGPVSLVYKMPPVIGALLPSLLFLLVSWYLLLKRR 358


>gi|318041350|ref|ZP_07973306.1| permease [Synechococcus sp. CB0101]
          Length = 388

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 115/365 (31%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++   +    L        ++  + ++ + +  V+ +     + +++ G  +P  L
Sbjct: 13  LMDRWLSSELLGPLLFGVAAFTAVSLSVGVVFELVRKVAEAGLPPLVAMQVLGLRLPGFL 72

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M T    + ++ ++EL  + + G     ++ P L +A L+++  F+  ++I
Sbjct: 73  VLSFPMATLMATLLAFSRLSSSSELTALRSIGVPTWRMVVPALVVAALMTVLTFVFNDVI 132

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI----------------KISKYN 165
            P            A      +   +N+ +     L                    S+  
Sbjct: 133 VPSANLAAADTLDAALGRSVAAERGDNVVYSRYAQLTSIDEKGRERTGNDLAQLFYSRRF 192

Query: 166 PNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS 225
               +  + ++D       ++  A++G  +  R       G +      +   +   F  
Sbjct: 193 REGKMYEVTLLDFTKAGHQQLLIAKTGIWNDARSMWEFRAGRIVDIDSANNRTTSADFDR 252

Query: 226 YTLQTESANSS--TIVLKANDQNLSFLLNPNPNNPNY-RPELLETYRSEFHKRLTQWLFP 282
           Y      A      +   A    ++               +     R    ++       
Sbjct: 253 YFYPFTKAPLDVGKLPSDAAQMTVAQAWRAEALLEQAGDRKEARRLRVRIQEKFAFPAIC 312

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           ++FGLI      +     +  +     IS+ + FG ++  S+I   +      +P    +
Sbjct: 313 LVFGLIGSSLGVRPNA--RTSRSQGFGISVLLIFG-YYLMSFIFSSLGIKGTLLPFFAAW 369

Query: 343 LFCIS 347
           +    
Sbjct: 370 MPVFI 374


>gi|261855830|ref|YP_003263113.1| permease YjgP/YjgQ family protein [Halothiobacillus neapolitanus
           c2]
 gi|261836299|gb|ACX96066.1| permease YjgP/YjgQ family protein [Halothiobacillus neapolitanus
           c2]
          Length = 376

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/366 (13%), Positives = 116/366 (31%), Gaps = 10/366 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + Y++R I    L S      +  V   +  +  V +++ S    L       P  
Sbjct: 1   MGTLDRYLIRAIVVGGLASTAAFALLIVVFGAIDELPKV-NASYSAIDALSFVLMTTPGY 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     L ++  ++EL ++  +G S   L +PVL  A +L++   +    
Sbjct: 60  LYDFYPAAVLVGGLLSLGNLAAHSELTVMRCSGMSMFRLARPVLVGATILALIGMLMGET 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I    +    ++ A+AQ +       ++  +  D   +I + +      L  + +     
Sbjct: 120 IGAWGQEKANEMRAEAQGSGVSMN-LKSGLWLRDGQRFINVGQAIVGGRLNRVRVFTVNA 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS----PISKDISIMKFKSYTLQTESANSS 236
                   + S +I        L D +           S  +  +  + +         +
Sbjct: 179 QSQPVQLLSASYAISEGGDLWRLYDVKESTLDTKVPGNSVKVRFVPVQEHVRLFSQKILN 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             VL     N+  L +   +           Y S    R+   +  ++   +++      
Sbjct: 239 IAVLNPRHMNILQL-HSYVDYLRKNQLDASAYSSALWARVFAPVSVLVMLFVALPFVFAP 297

Query: 297 ALVRQRKKIHPIFISLSISFG-VFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLM 353
                  +   I I L + +  +    S           +IP +   +     + + +  
Sbjct: 298 QRSGGAGRWLFIAIVLGVVYLTLVQIVSAFAPVYGVGHPFIPFMSAAVPPALFAMLGVYA 357

Query: 354 IKKKYT 359
            ++ Y 
Sbjct: 358 FRRLYP 363


>gi|311694207|gb|ADP97080.1| permease YjgP/YjgQ family protein [marine bacterium HP15]
          Length = 369

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/375 (13%), Positives = 132/375 (35%), Gaps = 29/375 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y++R I  S +     ++ +    + L+ ++  +  + S  +LL+I  +  P  
Sbjct: 1   MSIIFRYLIRQIMISMVAVSGILLLVFMSGRFLKYLDSAAQGSISAGVLLEIMAFRFPGF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +        M   +E+ ++   G S   L+   L  ++ + I +      
Sbjct: 61  LELILPLGLFIGILLAYGRMYLESEMTVLSACGVSDKALLGKTLLGSLPVMIIVGAMSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL--DDDLYIKISKYNPNNTLQGIFIVDS 178
           + P   + ++++  + + A  F  L    F        +    +       LQG+FI + 
Sbjct: 121 VSPWGMNQVQEILNEQRKATEFEMLAPGRFQDFSSGGRVTYTEALSEDKRQLQGVFIAEY 180

Query: 179 RDTQTHKIYYAQS-----GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
                                +   + +IL +G     +    + +++ F++Y L+ E  
Sbjct: 181 APDGRGLTIITADSGSQLIDPETGSRFLILENGGRFEGAAGQLNYNVIDFEAYGLKIEGG 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            + T   +      S + +    +           R+  H R +  L   I  L+++   
Sbjct: 241 EAGTKQREEGASTWSLMQSDRLED-----------RALLHWRFSLPLIVPIVTLLAVRL- 288

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH--KIEQNPYYIPILYLF-LFCISSIF 350
               +  ++ +   +  ++ +                  + P ++ +L++  LF    ++
Sbjct: 289 --SRVNPRQGRFFHLLPAMLVYITYLGLLIVARDWLAAGKVPEWLGMLWVHALFLGFGLW 346

Query: 351 L-----LMIKKKYTK 360
           L      + +++  +
Sbjct: 347 LQFGPAWLYRRRLIR 361


>gi|237723640|ref|ZP_04554121.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229437988|gb|EEO48065.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 390

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 126/362 (34%), Gaps = 7/362 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  ++YI++    ++  +   I+ IA V  + + I+   ++   L  I+       IP  
Sbjct: 33  KRLDIYIIKKFLGTYFFAIALIISIAVVFDVNENIDRFINNKAPLKAIVFDYYMNFIPYF 92

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ + +TG S   +++P +  A ++S+  F     
Sbjct: 93  SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIISVVTFGLGAY 152

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK   T      + +      Y+           +       N N T     +    D
Sbjct: 153 VIPKGNVTRLDFEDRYKKKKKQEYVRNVQLEVDSGVIAYIERYENYNKTGYRFSLDKFDD 212

Query: 181 TQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +      A+S + D        + +  +     + + I+        ++ E  +   + 
Sbjct: 213 KKLVAHLTARSVTYDTVSVHKWTIKNYMIREMEGMREKITRGDRLDTIIKMEPQDFLIMK 272

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +        L              ++ +  E+++R+       I   I +      +  
Sbjct: 273 GQQQTMTSPELKEYIDKQKRRGFANIKEFEIEYYQRIAMSFAAFILTTIGVSL---SSRK 329

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL-LMIKKKY 358
            +      + + L++SF  +  F  +      N    PI+ +++  I   F+ + + +K 
Sbjct: 330 MKGGMGLHLGVGLALSFS-YILFQTVSATFAVNGNTPPIIAVWIPNILYTFIAIYLYRKA 388

Query: 359 TK 360
            K
Sbjct: 389 PK 390


>gi|163735796|ref|ZP_02143225.1| permease YjgP/YjgQ family, putative [Roseobacter litoralis Och 149]
 gi|161390882|gb|EDQ15222.1| permease YjgP/YjgQ family, putative [Roseobacter litoralis Och 149]
          Length = 365

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/359 (11%), Positives = 109/359 (30%), Gaps = 12/359 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              LY  R      +++ + +  +  ++ ++ +    +    S   + ++     P  + 
Sbjct: 2   ILHLYFARRFASWLMIAFIALFALIALVDLVDQTRRFADRGVSAAGIFELVILNTPQTIS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T     S+ R++EL+    +G S +  +   + + I+L      + N I 
Sbjct: 62  QILPLIVLLATVAFFLSLARSSELIATRASGRSAMGALIAPVGVVIVLGTLATTTLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-------LYIKISKYNPNNTLQGIFI 175
                   +LS   +     ++        L          +    S  + +      F+
Sbjct: 122 AATSKKYNELSQTYRTGGGSTFSISTEGLWLRQGTDDGQMVIRAWRSNPDASVLFDVTFL 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQ-AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                    +  +A S  +         + D  + R      + +  +  +         
Sbjct: 182 AYEVIGTPVRRIHADSAELKDGAWLLRNVKDWPLARGINSEGNATEHRSLTIPSSLTVER 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                   +  ++  + N      N        +R      L + LF V   LI+     
Sbjct: 242 IRESFGHPSTISIWEM-NDFIKQLNQAGFSSLQHRVWLQSELARPLFLVAMVLIASAF-- 298

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                R       +  ++ + F +++  S+    + +N      L  +   I+S+ L  
Sbjct: 299 TMRHTRFGGTGVAVLAAVLLGFALYFVRSF-GLILGENGQLPVYLAAWAPPIASVLLAF 356


>gi|85859085|ref|YP_461287.1| permease [Syntrophus aciditrophicus SB]
 gi|85722176|gb|ABC77119.1| permease [Syntrophus aciditrophicus SB]
          Length = 359

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 126/357 (35%), Gaps = 3/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI R   R FL+  L  + +  ++   +++ ++ + + +   +L    + IP +
Sbjct: 1   MTILDRYISREFLRFFLLVILSFLSLFLIVDFFEKLKMLINYSATFYQILAFFFFRIPMM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    + +     S+++N+E++ +  +G S      P+L ++ L+++F F+   +
Sbjct: 61  LSLTIPAAVLLSSLLTFGSLSKNSEIVAMRASGVSLYRSSIPILLISFLIALFTFVFSEL 120

Query: 121 IEPKCRST-IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           I P            + +        ++   +            ++P +       ++  
Sbjct: 121 ITPYANEKAEYIRKVEIEKKEIQGIFKQEQIWYRGTRGIYNFKLFDPEHNTLRGITLNYM 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D + + I    +     DR   +  +  + R       +     +      E+ +   ++
Sbjct: 181 DRKMNLIMRVDAERAVWDRNQWVFYNLLIVRFDSAGFPVMERYGEKILDFPETPSDFRVI 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            K ++Q   F L                Y ++ H ++      V+  +I I  +      
Sbjct: 241 QKDSEQMGYFELRKYVQKIRTEGYDATRYLADLHGKIAFPFVCVLLAVIGISFSL--KTE 298

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R       IF  L I F  +  F++ +           +       +  +  L++ K
Sbjct: 299 RSGGLAGSIFAGLIIGFSYWILFAFSMSLGRSGTLPPLLAAWLANLLFGLSALVLFK 355


>gi|218551559|ref|YP_002385351.1| hypothetical protein EFER_4344 [Escherichia fergusonii ATCC 35469]
 gi|218359101|emb|CAQ91762.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia fergusonii ATCC 35469]
 gi|324112113|gb|EGC06091.1| inner membrane protein yjgQ [Escherichia fergusonii B253]
 gi|325499820|gb|EGC97679.1| hypothetical protein ECD227_3917 [Escherichia fergusonii ECD227]
          Length = 360

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 116/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDIQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    +E L+ +   +                     +   + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQEGLWAKDGKNFVYIERVKGEKELGGISIYAFNDQRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             I YA S + D D +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSIRYAASATFDPDNKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ ++
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRR 359


>gi|261342655|ref|ZP_05970513.1| membrane protein, YjgP/YjgQ family [Enterobacter cancerogenus ATCC
           35316]
 gi|288315303|gb|EFC54241.1| membrane protein, YjgP/YjgQ family [Enterobacter cancerogenus ATCC
           35316]
          Length = 360

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 116/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I  + +M+   +V ++ +I+ + ++                +   +P  + +
Sbjct: 7   LDRYIGRTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDAMGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++          +          + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDDELGGVSIYAFNNERRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + +A S   D + +   L+  +      P     +     ++           + L  
Sbjct: 187 QSVRHASSAKFDAEHKQWRLSQVDESNLTDPKQITGTQTVTGTWKTDLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L M+ ++
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFLLISLWMLLRR 359


>gi|315917902|ref|ZP_07914142.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691777|gb|EFS28612.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 362

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 122/363 (33%), Gaps = 12/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  ++Y+ +   + F  S    + I  + Q+ + +  V+    S   +    G L+P +
Sbjct: 2   MKKLDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYVNEGQLSPGQIPLFIGNLLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +     +  M  N E++ +  +G     L++  +F++ L+S+ +F   + 
Sbjct: 62  IINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYLNDR 121

Query: 121 -IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--- 176
                     +    +          +EN FFR  +  Y+   K     T     +    
Sbjct: 122 VYPGSVVRNRELRGKEDVEEREVPKEKENAFFRNVEGRYVYYMKKINRETGIMDHVEVLD 181

Query: 177 -DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                 +  ++  A+ G  D  R+  +  D  ++     + +      +   +       
Sbjct: 182 MSENFDKIERMITAKKGRYDFKRKLWVFEDAHIYYPDTDTVEARAFIQEQKYMDEPEYFI 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S   +    + ++ L        +     +    SE  KR +      +   + +     
Sbjct: 242 SLSNIIPKQKTIAEL-KKAIKEGSATGNEIREILSELGKRYSFPFASFVVSFLGLAL--- 297

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLM 353
            +   +   I  I IS+ + +  +         +  N Y  P L  ++      +  L  
Sbjct: 298 GSHYVRGMSILNIVISILLGYAYYLV-EGAFEALGMNGYLNPFLSGWIPNLLFLAAGLYF 356

Query: 354 IKK 356
           +++
Sbjct: 357 MRR 359


>gi|118581150|ref|YP_902400.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
 gi|118503860|gb|ABL00343.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
          Length = 367

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 128/357 (35%), Gaps = 18/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E YI+R I    ++ C  ++ I      ++ +N   +   S   ++ +    +   L 
Sbjct: 2   IIERYIVREICAPLVVICTVLIMIFSGFSAVRFLNDAVNGLLSGGTVVALVSLKVLIALE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L+ +  + E+  ++  G S+  LI  VLFLAILL++ +        
Sbjct: 62  VLIPVTLYLAIVLALSRLYADGEITAMEAGGLSQKKLISAVLFLAILLALMVTGLSLHAR 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     +  L  + Q     + +E   F+ L  +L     K +P         V     +
Sbjct: 122 PWAYGKMYLLETRGQNEFDIAKVEAGRFYELSHNLVFFAEKLDPARNQARNVWVWEFGPE 181

Query: 183 THKIYYAQSGSIDL----DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             ++  A+S          ++AI+  +G  +  +  +    ++ F+   LQ E       
Sbjct: 182 KRRVTSARSAFQTNGPGEGQKAIVFQEGSHYSLNLKTGTDHLVGFQENVLQLEPPQIPPA 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +    +   L                   +E   R +  +  V+  L++I       +
Sbjct: 242 KYRRKAASTEHL----------ATSTDPADIAELQWRFSTGISTVLMALLAIPL---SRV 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMI 354
             +R K   +  ++ + F ++         +E+     +P ++      + + L ++
Sbjct: 289 APRRGKYGKVVAAIILFFVIYNLSLIAKTWVEKQVVGAVPGIWWVTLLNAGLVLFLL 345


>gi|189500954|ref|YP_001960424.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
 gi|189496395|gb|ACE04943.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
          Length = 360

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 119/360 (33%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI R    +++ + +  V +  V+ +++ +            ++     LIP  
Sbjct: 1   MKLLDKYIARQYFTTYVFAGISFVSLFIVVSLIENLGSFIDKGIEAEQIILYYWSLIPET 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + + +P    + +  +   ++ ++EL  +   G     L+KP L +A+L+S F  ++   
Sbjct: 61  ILLTSPISSLLASLYITGRLSGSSELTAMKTAGAGMHQLLKPFLAVALLVSFFNILNAGW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK  +   +   +       +    N    L+    I            G+ I     
Sbjct: 121 LYPKAAALKNRFETQYFDKTFENISSSNNLHILESRNRILSIGSLDQQNNTGLNISLETF 180

Query: 181 TQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDIS-IMKFKSYTLQTESANSST 237
                     +  I  D      IL++      S      +      + TL   + +   
Sbjct: 181 EGPEIASRIDAKKISYDETLDRWILHETRTRVFSQNGMSYTLNPGNDTLTLSLSATSLRD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + ++ ++ ++                 L+    +FH +L   L  VI  L  +  + ++ 
Sbjct: 241 LSIQPDEMDIMQHYRYIDEKREAGFSNLDRVIVKFHNKLALPLASVIVILTGVPLSARKK 300

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 +      +  I  G+    S   ++   +P     L   LF    I +     +
Sbjct: 301 RSGLAIEFGISLFTGFIYLGLQRTLSTAGYRGLLDPVLAAWLPDLLFLAVGIAIYKTANR 360


>gi|302037951|ref|YP_003798273.1| putative YjgP/YjgQ family permease [Candidatus Nitrospira defluvii]
 gi|300606015|emb|CBK42348.1| putative Permease, YjgP/YjgQ family [Candidatus Nitrospira
           defluvii]
          Length = 361

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 131/360 (36%), Gaps = 7/360 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R +   F +S   + F+    ++L+ + L+ +       +LK+  +L+P+ L
Sbjct: 4   TILDRYIFRELFSPFGISLAALCFVMLTKELLRLVELLVTKGIGFLSVLKVFAHLLPSFL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      ++ + EL+ +   G S + L + V   A L+     +     
Sbjct: 64  VLTLPIAGIIATITAFGRLSLDKELVAMRAAGFSLLRLSQSVFIFAALVCGLTLVMAQYG 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           +P     +K+++           L+  +F      + I +         +GIF+ D R+ 
Sbjct: 124 QPWSNVNLKKVALNLLRDELVLELDRGVFNEAIPKMTIYVPDAQEGQDNRGIFVADERNP 183

Query: 182 QTHKIYYAQSGSIDLDRQAI----ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
              +I  AQ   +  D  +      L +G +H +    ++   + F SY L+      S 
Sbjct: 184 ADPRIIVAQQYQVMTDPASSQVALRLMNGVIHSRPQNPEEYQKISFTSYDLKLS---LSA 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +  A ++    ++     +  +          E++K L      ++F ++ +       
Sbjct: 241 SLYGAEERTPIDVIRAKLESTGWTDTNALRRLMEYYKDLAFPAASLVFCILGVPVGIVSK 300

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                       + +   + +     +++  +  +P+    L   +F + +I       +
Sbjct: 301 RSGSIGGFAVGVLVVIAYYVINVACEFLVTTLWISPFAGAWLPNVIFTVVTILWFYRVSR 360


>gi|238023197|ref|ZP_04603623.1| hypothetical protein GCWU000324_03124 [Kingella oralis ATCC 51147]
 gi|237865580|gb|EEP66720.1| hypothetical protein GCWU000324_03124 [Kingella oralis ATCC 51147]
          Length = 355

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/360 (10%), Positives = 115/360 (31%), Gaps = 5/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+++ +  +   +   I+ +   I ++   ++V  +  +L +  +     +P  
Sbjct: 1   MNLITRYLIKRLAVASCYALFAILALYSFIDLISETSVVGQNQYTLWVATQYILMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L  +  N+EL +I  +G S   +I  ++  + + +I   +    
Sbjct: 61  AYQLMPLATLIGGLVALNQLANNSELAVIKTSGLSTANIIGIIIKFSAIFAIATVLLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+      ++ A A+     +     ++ +    +    S    N  +       +  
Sbjct: 121 LAPELSRRGDEMKANARAGHIAAAHN-GIWIKQPGSMINVASMLPDNTLVGIKIWHYNDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q  +   A+  ++     A  L++      +           + +         + +++
Sbjct: 180 FQLTEAISAEKATVANG--AWQLHNTHSTTLADNHAQPQQQAEREWQTDIGKPLLNVLLV 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    + + L            +  + Y   +  +L   +  ++  L+++          
Sbjct: 238 KPEQMSFTALTQ-YIRYLKENHQQTQAYDVAWWNKLIYPIATMVMALVALAFTPNSGRHS 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F           ++   P  +  + L         + +I+K+  +
Sbjct: 297 NMGLKLFGGICLGLLFFFTGRLFGFTTQLYGVPAMLSAI-LPTAAFGCWAMYLIRKQEQR 355


>gi|224368911|ref|YP_002603073.1| predicted permease family protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223691628|gb|ACN14911.1| predicted permease family protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 391

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 132/367 (35%), Gaps = 17/367 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M +   YI R +   F +S +F+  I  + +I +  N+V +    +  +L +    +P  
Sbjct: 2   MTTINRYIFRELIPPFAISAVFLTSIFIMTRIPEITNMVVNYNTGIFSVLLLIACTLPRF 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +        M+ + E++ +   G +   L+ PVL   +L +        I
Sbjct: 62  MEFTIPMSVMISVLLTFMRMSGDNEIIALKGGGITIYRLLPPVLIFCLLGTAVTLWITII 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL-QGIFIVDSR 179
             P    + K L      +     L +  F     D+ I IS  +      + +FI D R
Sbjct: 122 GVPLGNMSFKTLGIAMARSNLNVALSDGTFNSSFKDVMIYISSMDVKTKKLRDLFIEDRR 181

Query: 180 DTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE---- 231
                 I  A  G +  D      A+ L  G V++    S+ I+ + F +Y +  +    
Sbjct: 182 TKDRVTISVAPEGVLVKDAVTGSYALRLYGGSVNQVDLKSRSINNVGFDTYDINLDFAQV 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
             +S       ++  L+ L              L     EFH++ +  +  +  G++++ 
Sbjct: 242 QKSSKVGNKDFDEMTLNELRAFLKKTSE--KPELNAALMEFHEKFSIPIACIAMGILAMA 299

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSI 349
              + A  R+              F +++          +N  Y P+  +++    +  I
Sbjct: 300 LGLQAASSRKTAGFGLGMF----FFLLYYLLLAAGWSAGENGLYPPLIGMWMPDIVMGGI 355

Query: 350 FLLMIKK 356
              ++ +
Sbjct: 356 GSFLLYR 362


>gi|189347121|ref|YP_001943650.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
 gi|189341268|gb|ACD90671.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
          Length = 403

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/399 (16%), Positives = 140/399 (35%), Gaps = 44/399 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+     F+++ + IVF+  +  +    +       ++  + ++       +
Sbjct: 1   MKIIDRYILKSHIGPFILAFITIVFVLVLQFLAGFSDRFLGKGINIADIAELVMLQSAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +       +M  ++E+ +   +G S   L  PVL +A LLS+ +    N+
Sbjct: 61  VVFAVPMAVLVAVIMAYGTMTNSSEMTVFRASGLSLYRLAVPVLIVAALLSLLVERFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           + P+     K L      A     L EN F    D   I + K +  +  ++G+ + D R
Sbjct: 121 VIPEANYRSKSLMMDIARAKPTFGLTENAFSSFIDGYSIFVRKTDEASKEIRGVVLYDLR 180

Query: 180 DTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKD--------ISIMKFKSYT 227
           + ++  +  A+ G I          + L +GE+H+                  + F++  
Sbjct: 181 NPKSRTMMSAERGVIRFSPDNRFLVMTLFNGEIHQIDQSDYHKYRAMRFGQHRLVFETTG 240

Query: 228 LQTESANSSTIVLKANDQNLSFL--------------------------LNPNPNNPNYR 261
                 ++  I    ++ +   L                          L          
Sbjct: 241 FGFSRTSNDRIRGNISELSAGELHVAASALQRGIVSAERRVASITDAGPLQREQERIEAD 300

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
                 Y  E++K+    +   +F L  I         R+        ISL++ F ++W 
Sbjct: 301 KMQYNKYLIEYYKKYAISVACFVFALAGIPLGVLA---RRGGFGVGAGISLAL-FVLYWS 356

Query: 322 FSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKKYT 359
                 KI +     P+L ++    ++ +F L +  + +
Sbjct: 357 MIIGGEKIAERGLLDPVLSVWSANAVTGLFGLFLLHRMS 395


>gi|163746449|ref|ZP_02153807.1| permease YjgP/YjgQ family, putative [Oceanibulbus indolifex HEL-45]
 gi|161380334|gb|EDQ04745.1| permease YjgP/YjgQ family, putative [Oceanibulbus indolifex HEL-45]
          Length = 365

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/364 (10%), Positives = 110/364 (30%), Gaps = 22/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y  R    SF++    +  +  ++  + +    +      + +L ++   +P  + 
Sbjct: 2   ILHFYFARRFFTSFMVITAVLAALVMLVDGVDQARRFADDDVGWDQVLGMTLLNMPQTIN 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+ P    + T  +   + R++E+++    G S +  +   + +A+++        N I 
Sbjct: 62  MILPLIMILATVALFIGLARSSEMVVTRAAGRSALRALVAPVVVALIIGTLAVAVLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-------LYIKISKYNPNNTLQGIFI 175
                  +QL+ K +   + +    +    L          +    +  + +       I
Sbjct: 122 AATSERSEQLTQKYRSNGSSALSVSDEGLWLRQGTEEGQSVIRAWRTNSDASVLYNVTII 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQA------IILNDGEVHRKSPISKDISIMKFKSYTLQ 229
               +    +   A+S  +              L  G     +    +   +        
Sbjct: 182 SYDAEKGPIRRIEAESAQLSGGDWQLTGAKIWPLEAGVNAEGAAEEHETLTI-----PSS 236

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                    + +    ++  L                 +       L +  F V   L++
Sbjct: 237 LTVERIRESIARVAAVSIYEL-PEFIRQLEQAGFSTRQHEVWLQAELARPFFLVAMVLVA 295

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                     R       +  S+ + FG+++  S+    + +N      L  +   +++I
Sbjct: 296 SAF--TMRHTRFGGTGVAVLASILLGFGLYFIRSFAQ-ILGENGQIPVTLAAWAPPVAAI 352

Query: 350 FLLM 353
           FL +
Sbjct: 353 FLAL 356


>gi|294139611|ref|YP_003555589.1| hypothetical protein SVI_0840 [Shewanella violacea DSS12]
 gi|293326080|dbj|BAJ00811.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 352

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/356 (12%), Positives = 118/356 (33%), Gaps = 4/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ +V   + ++        +LIP  
Sbjct: 1   MKILDLYIARTLVSASALCLLILTGLSGIIKWVDQLRVVGRGSYTMLDAGIYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     + ++   +EL+++ + G SR  +    +  A+ L + + +    
Sbjct: 61  IEMFFPMAVLLGALIGMGTLASGSELVVMQSAGLSRFQITLSAMKTAVPLMLMIMVLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P       +L A      +       ++ +  D         N N             
Sbjct: 121 GAPAAERRANELQAFKVSGGSLIKSSRGIWAKDGDLFVNIGEVENINRLHNITLYEFDST 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               K  +A+ G    D     L D      +     ++ +    +         S + +
Sbjct: 181 LTLVKTIHAERGVYSND--HWRLIDVRQTDLTKDKVTLTDLTLYRWDSTLTPDKLSVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++  L+    +      +    Y     +++ Q +   +  L+++          
Sbjct: 239 KPESLSIQGLM-GYLDYLKVNNQDSGRYELALWRKIMQPVTVAVMMLVALSFVFGPLRTV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  + +    +F +       +  +   P ++  + +     S+I +  I+K
Sbjct: 298 TMGARVLLGVIAGFTFYISSEIFGPLTLVYGLPAFLGAV-MPALIFSTIAIYFIRK 352


>gi|224368912|ref|YP_002603074.1| putative permease [Desulfobacterium autotrophicum HRM2]
 gi|223691629|gb|ACN14912.1| putative permease [Desulfobacterium autotrophicum HRM2]
          Length = 359

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/353 (17%), Positives = 118/353 (33%), Gaps = 6/353 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y L+   R F +  + ++ I   +  L  +     S  SL   L      IP +
Sbjct: 1   MSILHRYWLKEFTRFFAIVQMLLLCIFLAVDYLSNMEKFLRSNFSLIQGLGYILLKIPFM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
               TP    + T  V + MNRN ELL +  +G S   L+KPV+ + ++L++ +      
Sbjct: 61  FVQFTPAGVVLATIVVFSLMNRNNELLALKGSGVSVYHLLKPVVLVGVILAMTMIFLGET 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P   +    + +         Y      +  D +  I I+ +NP +       + S  
Sbjct: 121 IVPYTMAKANHIRSSTLKKNKKIYATWENIWIRDGNKIIHINYFNPADNSISGITITSFG 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHR--KSPISKDISIMKFKSYTLQTESANSSTI 238
                     + +   D     L++           + DI     K++ L  E A+  T+
Sbjct: 181 ADFKIATRVDAENGRFDSGQWQLSNVLEQNNPGDEHNADIQFYDHKAFALDVEPADLKTV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             K +  ++  L     +           Y  +F  ++   +  ++  L+   A    A 
Sbjct: 241 AKKTDQMSIQEL-KAYIHKIENEGYDATHYIVDFWAKIAFPIICLVMALVGAGAGMLSAA 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                    + I ++     +W        +       P L  +   +  I L
Sbjct: 300 KENMPLGIALGIGVAFC---YWVVHGFCTSLGYGGMIPPFLSAWTADLIFICL 349


>gi|87302818|ref|ZP_01085629.1| possible permease [Synechococcus sp. WH 5701]
 gi|87282701|gb|EAQ74659.1| possible permease [Synechococcus sp. WH 5701]
          Length = 401

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 122/361 (33%), Gaps = 22/361 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++   +    L        ++  + ++ + +  V+ S   L   L++ G  +P  L
Sbjct: 29  LMDRWLTNELMGPLLFGVAAFTAVSLSVGVVFELVRRVAESGLPLLTALQVLGLRMPGFL 88

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M T    ++++ N+EL+ + + G S   ++ P L +A+L+S+  F+  ++I
Sbjct: 89  VLSFPMATLMATLLAYSTLSSNSELIALRSVGVSTWRMVLPALIVAVLMSLLTFVFNDLI 148

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P           +A      +    N+ +        K+ +      L  +F       
Sbjct: 149 VPSANLEATNTLNQALGKAIAAEKGSNIIYSRFSRRPSKLDESGSERYLSQLFYSRQFKD 208

Query: 182 QTHKIYY--------------AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
              +                 A++G+ + +       DG++      S+  +  KF  Y 
Sbjct: 209 GEMEEVTVLDFSRPSGTQILKAKTGTWNDEAGMWEFRDGQIV-LVGDSETTTSAKFDRYL 267

Query: 228 LQTESANSS--TIVLKANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
              +        +   A   ++S  L            +     R    ++       ++
Sbjct: 268 YPLDQGPLKLAALPKDAASMSVSEALRAETLLREAGDQKEARRLRVRIQEKFAFPAICLV 327

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           FGLI      +     +  +     IS+ + F  ++  S+I   +       P+L  +  
Sbjct: 328 FGLIGSSLGVRPNA--RTSRSQGFGISVLLIFS-YYLMSFIFSSLGVKGTLGPVLAAWSP 384

Query: 345 C 345
            
Sbjct: 385 V 385


>gi|209694121|ref|YP_002262049.1| putative permease [Aliivibrio salmonicida LFI1238]
 gi|208008072|emb|CAQ78213.1| putative permease [Aliivibrio salmonicida LFI1238]
          Length = 358

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 122/359 (33%), Gaps = 5/359 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  + +V ++ +I+ ++++  V   T  L   L      +P  +
Sbjct: 3   KILDWYIGRTIIATSSLCLVTLVGLSSIIKYVEQLRKVGKGTYDLLDALYFVILSMPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  AI L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLAASSELVVMQAAGYSKLDIGISVLKTAIPLMLMVMALGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L A +      + +   ++ +  +D        +             ++ 
Sbjct: 123 APQAQKMARDLRAFSISGGNIASMRTGVWAKDGNDFIYLSRVDDQAKLYGVTLWQFDKER 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS-IMKFKSYTLQTESANSSTIVL 240
           +   I +A+    +   +   L D  +      +      +   S++        + + +
Sbjct: 183 KLDDIVFAKKAEYESKEEGWKLIDVSITDMKDENIITEKKLDSLSWSTTLTPDKLAVVSV 242

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K  +Q+L+ L +   N           Y   F ++  Q +   +  L+++         R
Sbjct: 243 KPEEQSLTGLYD-YVNYLKDSELDASRYELAFWRKALQPISVAVMMLLALSFVFGPL--R 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYII-HKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                  I   +   F  +          +  N + I       F    I L ++ +K 
Sbjct: 300 SVTMGARILSGVIAGFSFYISNEVFGPMTLVYNIHPIFGALGPSFVFLLITLGLLNRKL 358


>gi|91774576|ref|YP_544332.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
 gi|91708563|gb|ABE48491.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
          Length = 356

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/358 (12%), Positives = 127/358 (35%), Gaps = 4/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+ + I  S ++  L ++ +     ++Q +  +      ++ +L       P  
Sbjct: 1   MKLLNRYLAQEIVSSIMLIMLALLAMFSFFDLIQELESLGKGNYGISKVLLYVLLSAPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    + T   L   +R +EL+I+  +G S   +   +L + ++ ++  F+   +
Sbjct: 61  VYEVVPVAVLVGTMYALGQFSRYSELIILRVSGISIRKIAFSLLRVGLVFAVITFLVGEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      +++  +A  ++        L+ +  +      +     + +         +
Sbjct: 121 IAPMSEKAAQRIRIQATDSVVAQDFRSGLWVKDGNSFVNVQNVMPDASLMDIHIYEFDNE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   I  A+ GS   D  +  L+              ++ +  ++         + +++
Sbjct: 181 FRLRTISNAKEGSF--DGNSWNLHQVTQTHFEEQKIRTNVFQEATWQSLIRPELLNVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L     N+     +    ++     ++   L  ++  ++++     +    
Sbjct: 239 VPEKMSAWNLYF-YINHLASNKQKTSRHQIALWSKMIYPLACLVMVILALPFGFLQQRSS 297

Query: 301 QRKKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    I L I + V    F ++    + +P +  ++   LF  + IF+L   ++
Sbjct: 298 SASTKIFSGIMLGIVYQVLNRVFVHLGLLNDWSPLFSAVMPTLLFMAAGIFMLYWVER 355


>gi|30248805|ref|NP_840875.1| hypothetical protein NE0801 [Nitrosomonas europaea ATCC 19718]
 gi|30180400|emb|CAD84712.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
          Length = 358

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 134/360 (37%), Gaps = 20/360 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R +   F++  + ++ +     + + +    + T     + K+ G      
Sbjct: 1   MKIIERYITRELLFPFIVVTVILIGLFVSFSVARFLTSAVTETLGTAAMFKLVGLKTIIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P  F +     L+ MNR+ E+ ++   G     +I+ V  +A+ ++I   I    
Sbjct: 61  LEVLVPIAFYVAVIYGLSRMNRDQEINVLRTAGYGDNRIIRTVFVIALPIAILSGILSVY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSR 179
             P   +    + A+A+  L  +  +   F+  +     I I   +             R
Sbjct: 121 ARPWAYAESYIMDAQAEAELNTNRFQPGRFYGSEKSGRVIFIRGKDDLEKRMEGVFHYIR 180

Query: 180 DTQTHKIYYAQSGSID----LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            T+  +I  ++ G            I L +G+++R S  +   S ++F+      E+  +
Sbjct: 181 TTEDREIIISREGYQQPMTAEQWPHIELREGQIYRLSFDTVKDSAIRFEKMIYFNENDQA 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                KA   +   L +                 +E   RL++ +  V+  LI++     
Sbjct: 241 QNYRRKAA--STRSLWDSEE----------PREIAELQWRLSRPVATVLLALIAVSFT-- 286

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                ++ K    F+  ++ F V++  S +     +      +  ++      I ++M++
Sbjct: 287 -RTAPRKDKTDRTFLVAALVFAVYYNLSGLAKTWVEQGVVAAMPGVWWVYGLLIIIVMLR 345


>gi|257465008|ref|ZP_05629379.1| permease, inner membrane protein yjgQ [Actinobacillus minor 202]
 gi|257450668|gb|EEV24711.1| permease, inner membrane protein yjgQ [Actinobacillus minor 202]
          Length = 360

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 119/360 (33%), Gaps = 9/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI + I  +  ++   +V +  +I+ ++    V   +    +    +   IP  
Sbjct: 6   MNVLERYIGKTILSAIFLTLFLLVGLGAIIKFVEEFKAVGKGSYDALLAAYYTFLTIPRD 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L ++   +EL+++  +G SR  +   V+  A+ L +F  I    
Sbjct: 66  VETFFPIAALLGSLLGLGNLASRSELVVMQASGFSRFRIGLAVMKTAVPLILFTMIIGEW 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+      +       +          F+  D + ++ I +      L  + I     
Sbjct: 126 GVPQT-EQYARDMRSVAQSGGSMLSTSGGFWARDGENFVYIRRIGSETQLNNLSIYHFDK 184

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   I  A       D    IL   E       +   S  K + +      +    + L
Sbjct: 185 KELKSITQAAEAKYTNDN--WILKKVEKSTIEGNTIKQSKEKDQPWQTSITPSKLGIVSL 242

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    +++ L +          +  + +   F +++ Q +   +  L++I         R
Sbjct: 243 KPESLSITGLAD-YVGFLKETGQDPKRFEITFWRKVYQPISMAVMMLLAISFIFGPL--R 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI---PILYLFLFCISSIFLLMIKKK 357
                  I I +   F  +       +      +       L   L C+S ++ L+ KK+
Sbjct: 300 SSTMGAKIVIGIVAGFMFYVANIVFGNMSLIATWLPVSIGALIPSLICLSIVWWLLTKKR 359


>gi|91792233|ref|YP_561884.1| permease YjgP/YjgQ [Shewanella denitrificans OS217]
 gi|91714235|gb|ABE54161.1| permease YjgP/YjgQ [Shewanella denitrificans OS217]
          Length = 351

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 117/353 (33%), Gaps = 3/353 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +LYI R I  +  +  L +  ++ +I+ + ++ LV   + ++        +LIP  + 
Sbjct: 2   ILDLYIARAILATSSLCLLILTGLSGIIKWVDQLRLVGRGSYTMIDAGIYVLFLIPRDIE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M  P    +     +  +  ++EL+++  +G SR+ +    +  A+ L + + +      
Sbjct: 62  MFFPMAVLLGALIGMGMLASSSELVVMQASGMSRLQISMSAMKTAVPLMLLVMVLGEWGA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P    + K+L A      +       ++ +  D           N+             +
Sbjct: 122 PVAERSAKELQATKLSGGSLIKSHRGIWAKDGDLFVNIGEVETVNSLNNITLYEFDEAMK 181

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             K+ +AQ        +A  L   +    S     +     +S+           + +K 
Sbjct: 182 LVKVIHAQEAQF--KDEAWQLQQVKTTVFSDEKITLVEQPLQSWNSSLTPDKLGVVSVKP 239

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              ++  LL+   +      +    Y     +++ Q +   +  L+++            
Sbjct: 240 EALSIQGLLD-YLDYLEVNQQDPSRYNLALWRKIMQPVTIAVMMLVALSFVFGPLRTVTM 298

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                + +     F +       +  + + P  +  +   L   ++    + K
Sbjct: 299 GARVLLGVVAGFGFYISNQIFGPMSIVYELPAAVGAIAPSLLFTTAAVYYIRK 351


>gi|260221416|emb|CBA29957.1| hypothetical protein Csp_A14750 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 384

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 133/368 (36%), Gaps = 11/368 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI---NLVSSSTESLNILLKISGYLI 57
           MK+    +   +  +  +  L  + + +   +++ +   + ++SS   +   L     +I
Sbjct: 17  MKTLRKLLYGEVITAVTLVTLGFMALFFFFDVVEELQSVSRIASSGYQVPQALIYVALMI 76

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P  +  + P    + T  V+  + R++E  I+  +G      ++ +L L +   +F F  
Sbjct: 77  PAHVYELFPITVLIGTIFVMARLARSSEFTILRTSGLGPWRALRTLLALGLGFVLFTFAV 136

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEEN-LFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + + P    T + L ++ Q  ++           +      + +   + + TL+ + + 
Sbjct: 137 GDYVAPLADKTAQLLKSRFQGKISVGKTGAWLKERQAYGSYSVNVGALSSDATLKDVRVY 196

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK---FKSYTLQTE-S 232
           +  +                D ++ +L  G     +     +S +    F+S+   T+ S
Sbjct: 197 EFDNQGKVVSLTEAKAGTFGDDESWMLTQGVRTEFTSGPDQVSKVDRVAFESFRWPTQIS 256

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           A      +   ++  +  L     + N   +  + Y  +F K++   L  ++  ++S+  
Sbjct: 257 AEMVAAAVLRPERMGTIDLFQYIRHLNANGQSAQKYEIQFWKKVFYPLSCLVMVVLSLPF 316

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFL--FCISSI 349
           A                +   ISF +     + + +     P+    L   +  F   + 
Sbjct: 317 AYLHFRSGSIAGYTFGGVMAGISFVLLNNVLNDLGNLQGWQPWITAALPGLIYSFFSLAA 376

Query: 350 FLLMIKKK 357
           F  ++ ++
Sbjct: 377 FTWLVLRR 384


>gi|110680307|ref|YP_683314.1| YjgP/YjgQ family permease [Roseobacter denitrificans OCh 114]
 gi|109456423|gb|ABG32628.1| permease YjgP/YjgQ family, putative [Roseobacter denitrificans OCh
           114]
          Length = 365

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 107/359 (29%), Gaps = 12/359 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              LY  R      L++ + +  +  ++ ++ +    +    S   + ++     P  + 
Sbjct: 2   ILHLYFARRFASWLLIAFIALSALIALVDLVDQTRRFADRGVSATGIFELVILNTPQTIS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T     S+ R++EL+    +G S +  +   + + ILL      + N I 
Sbjct: 62  QILPLIVLLATVAFFLSLARSSELIATRASGRSAMGALVAPVSVVILLGTLATTTLNPIV 121

Query: 123 PKCRSTIKQLSAKAQ-------LALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
                   +LS   +          T               +    S  + +      F+
Sbjct: 122 AATSKKYNELSQIYRTGGVSTLSISTEGLWLRQATDDGQMVIRAWRSNPDASVLFDVTFL 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQ-AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                    +  +A S  +         + D  + R      + +  +  +         
Sbjct: 182 AYEVIGTPVRRIHADSAELKDGAWLLRNVKDWPLARGINSEGNATEHRSLTIPSSLTVER 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                   +  ++  + +      N        +R      L + LF V   LI+     
Sbjct: 242 IRESFGHPSTISIWEMTD-FIKQLNQAGFSSLQHRVWLQSELARPLFLVAMVLIASAF-- 298

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                R       +  ++ + F +++  S+    + +N      L  +   I+S+ L  
Sbjct: 299 TMRHTRFGGTGVAVLAAVLLGFALYFVRSF-GLILGENGQLPVYLAAWAPPIASVLLAF 356


>gi|254410176|ref|ZP_05023956.1| putative permease, YjgP/YjgQ family [Microcoleus chthonoplastes PCC
           7420]
 gi|196183212|gb|EDX78196.1| putative permease, YjgP/YjgQ family [Microcoleus chthonoplastes PCC
           7420]
          Length = 380

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 128/365 (35%), Gaps = 14/365 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + YI+  +   FL        +   +  +   +           ++LK+    +P  
Sbjct: 17  SVMDRYIITELIPPFLFGMGMFSSVGVTIGSLFDLMRRAVDEGLPATLVLKVLLLSLPQF 76

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + T    + ++ ++EL+ + + G S   L+ P L L+++++   F     
Sbjct: 77  MAYAFPTSVLLATLLTYSRLSSDSELIALRSCGVSIYRLVLPALLLSLVVTGITFGFNEY 136

Query: 121 IEPKCRSTIKQLSAKA----QLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           + P           KA    +       +    +        +  ++      ++G+ I+
Sbjct: 137 VVPASNYQATITLEKALGEEKPTFKERNIFYREYAEDKTLKRLFYAQNFDGERMKGLTIL 196

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SAN 234
           D      ++I  A S   ++ +      +G ++  SP +   +I++F+   LQ      +
Sbjct: 197 DWSQQSLNQIVTADSAIWNVAQSTWDFYNGTIYLVSPDASYRNIVRFEHQQLQLPRIPLD 256

Query: 235 SSTIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            +      ++ N++           +   E +   +    ++       V+FGL+     
Sbjct: 257 LARKDRDYDEMNITQARERLELERQSGDEEDIRKLKIRISQKFALPFACVVFGLVG---G 313

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFL 351
                 ++  K     IS+ + F  ++    I   +  + Y  P++  +L      ++  
Sbjct: 314 SLGNQPQRTSKATGFGISVLVIFA-YYMLMAIGDALGLSNYLPPLISAWLPNLMGFAVGG 372

Query: 352 LMIKK 356
            ++ +
Sbjct: 373 FLLIR 377


>gi|304396397|ref|ZP_07378278.1| permease YjgP/YjgQ family protein [Pantoea sp. aB]
 gi|304355906|gb|EFM20272.1| permease YjgP/YjgQ family protein [Pantoea sp. aB]
          Length = 358

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/357 (10%), Positives = 113/357 (31%), Gaps = 2/357 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YI + I  + +++   +V ++ +I+ + ++      + S       +   +P  +
Sbjct: 3   RVLDRYIGKTIFNTIMLTLFMLVSLSGIIKFVDQLRKTGQGSYSALSAGYYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++ + +EL+++   G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGALAQRSELVVMQAAGFTRMQVALSVMKTAIPLVLLTMAIGEFV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      +   A+          +  L+ +  +           N          +   
Sbjct: 123 APSGEQMARNYRAQQLYGGALVSTQNGLWAKDGNSFIYIERIKGDNEIDGVSIYNFNDQR 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTIVL 240
           +   + YA + + D D++  +L+  +    +   +          +           + L
Sbjct: 183 RLQSVRYAATATWDKDKKRWLLSQVDESNLTDPKQITGSQSLSGEWKTNLTPDKLGVVAL 242

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  ++  L +          +    Y      ++ Q L   +  L+++          
Sbjct: 243 DPDALSIRGL-HSYSKYLKQSGQEAGRYELNMWSKIFQPLSVAVMMLMALSFIFGPLRSV 301

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    IS    F V       +  +   P  +  +       +    ++IK++
Sbjct: 302 SMGVRVVTGISFGFLFYVLDQIFGPLSLVYGLPPILGAILPSFAFFAISMFMLIKRR 358


>gi|313206715|ref|YP_004045892.1| permease yjgp/yjgq family protein [Riemerella anatipestifer DSM
           15868]
 gi|312446031|gb|ADQ82386.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer DSM
           15868]
 gi|315023785|gb|EFT36787.1| hypothetical protein RAYM_00180 [Riemerella anatipestifer RA-YM]
 gi|325335845|gb|ADZ12119.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer RA-GD]
          Length = 364

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/364 (11%), Positives = 128/364 (35%), Gaps = 10/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK-ISGYLIPT 59
           MK  + YI++    + +   + +  I  V+ I  +   +  S  ++   L     + +  
Sbjct: 1   MKIIDAYIIKKFLGTLVFMLVLLSIIVIVVDIQAKAPNIEKSGYTVGDFLLHFYPFWMIY 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++         +      + M  NTE++ I ++G S     +P   +A+ +++F+ +  +
Sbjct: 61  LILTFMSILVFISVIYFSSRMADNTEIVAIVSSGASFHRFARPYFMVAVGIALFMLMLNH 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVD 177
              P       +L    +  +       ++    ++    Y+ I  Y+        ++  
Sbjct: 121 FALPWANVKKNELMVFTESQVRQEEKNRSVAISAQMSPTEYVFIGSYHRKEARGSDYLYQ 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D     I+  +   +  D +    +    + K     +   +   + T Q+       
Sbjct: 181 KFDKNNKLIHQIRGDYVSWDEKKQAFSITSFYEKKAGKNETEKLSNGTQTYQSFGYPPEE 240

Query: 238 IVLKA---NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +        ++    L+             + TY +E H R +  +  +I  ++ +  A 
Sbjct: 241 LFPDELLGENKTTPELVKFINREKIKGNGNINTYLNELHARTSMPVSIIILTILGLALA- 299

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYI-IHKIEQNPYYIPILYLFLFCISSIFLLM 353
             +  ++      + + ++++F   + F  + +    +       +++  F  + + LL+
Sbjct: 300 --SEKKRGGIGVNLAVGIALAFVFIFSFEALKVVSSSKILTPFVAMWMPNFVFAPLALLL 357

Query: 354 IKKK 357
             ++
Sbjct: 358 YFRR 361


>gi|237710072|ref|ZP_04540553.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229456165|gb|EEO61886.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 365

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 126/362 (34%), Gaps = 7/362 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  ++YI++    ++  +   I+ IA V  + + I+   ++   L  I+       IP  
Sbjct: 8   KRLDIYIIKKFLGTYFFAIALIISIAVVFDVNENIDRFINNKAPLKAIVFDYYMNFIPYF 67

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ + +TG S   +++P +  A ++S+  F     
Sbjct: 68  SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIISVVTFGLGAY 127

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK   T      + +      Y+           +       N N T     +    D
Sbjct: 128 VIPKGNVTRLDFEDRYKKKKKQEYVRNVQLEVDSGVIAYIERYENYNKTGYRFSLDKFDD 187

Query: 181 TQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +      A+S + D        + +  +     + + I+        ++ E  +   + 
Sbjct: 188 KKLVAHLTARSVTYDTASVHKWTIKNYMIREMEGMREKITRGDRLDTIIKMEPQDFLIMK 247

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +        L              ++ +  E+++R+       I   I +      +  
Sbjct: 248 GQQQTMTSPELKEYIDKQKRRGFANIKEFEIEYYQRIAMSFAAFILTTIGVSL---SSRK 304

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL-LMIKKKY 358
            +      + + L++SF  +  F  +      N    PI+ +++  I   F+ + + +K 
Sbjct: 305 MKGGMGLHLGVGLALSFS-YILFQTVSATFAVNGNTPPIIAVWIPNILYTFIAIYLYRKA 363

Query: 359 TK 360
            K
Sbjct: 364 PK 365


>gi|270296760|ref|ZP_06202959.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272747|gb|EFA18610.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 378

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 126/363 (34%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S     N I+       IP 
Sbjct: 20  LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWNAIVFDYYLNFIPY 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F   +
Sbjct: 80  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVVTFCLGS 139

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + PK   T      K       +             +       + + T     +    
Sbjct: 140 YVIPKGSVTRINFEDKYYKPRKANTARNIQLEVDSGVIAYIERFEDYSKTGYRFSLDKFN 199

Query: 180 DTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           D Q      A+S + D        + D  + +   + + I+       TL  E A+   +
Sbjct: 200 DKQLVSHLTARSITYDTTAVHKWKIKDYMIRQMDGMKESITKGDRIDTTLFMEPADFLIM 259

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        L              ++ +  E+HKR+       I  LI +      + 
Sbjct: 260 KNQQEMLTSPQLSEYISRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSL---SSK 316

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKK 357
             +      + I L++SF  +  F  I      N    P++ +++   + +     + +K
Sbjct: 317 KTKGGMGLHLGIGLALSFS-YILFQTIASTFAVNGNMPPVIAVWIPNIMYAFIAFYLYRK 375

Query: 358 YTK 360
             K
Sbjct: 376 APK 378


>gi|160888237|ref|ZP_02069240.1| hypothetical protein BACUNI_00646 [Bacteroides uniformis ATCC 8492]
 gi|317480118|ref|ZP_07939228.1| hypothetical protein HMPREF1007_02345 [Bacteroides sp. 4_1_36]
 gi|156862183|gb|EDO55614.1| hypothetical protein BACUNI_00646 [Bacteroides uniformis ATCC 8492]
 gi|316903665|gb|EFV25509.1| hypothetical protein HMPREF1007_02345 [Bacteroides sp. 4_1_36]
          Length = 378

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 126/363 (34%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S     N I+       IP 
Sbjct: 20  LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWNAIVFDYYLNFIPY 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F   +
Sbjct: 80  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVVTFCLGS 139

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + PK   T      K       +             +       + + T     +    
Sbjct: 140 YVIPKGSVTRINFEDKYYKPRKANTARNIQLEVDSGVIAYIERFEDYSKTGYRFSLDKFN 199

Query: 180 DTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           D Q      A+S + D        + D  + +   + + I+       TL  E A+   +
Sbjct: 200 DKQLVSHLTARSITYDTTAVHKWKIKDYMIRQMDGMKESITKGDRIDTTLFMEPADFLIM 259

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        L              ++ +  E+HKR+       I  LI +      + 
Sbjct: 260 KNQQEMLTSPQLSEYINRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSL---SSK 316

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKK 357
             +      + I L++SF  +  F  I      N    P++ +++   + +     + +K
Sbjct: 317 KTKGGMGLHLGIGLALSFS-YILFQTIASTFAVNGNMPPVIAVWIPNIMYAFIAFYLYRK 375

Query: 358 YTK 360
             K
Sbjct: 376 APK 378


>gi|50119364|ref|YP_048531.1| putative permease [Pectobacterium atrosepticum SCRI1043]
 gi|49609890|emb|CAG73325.1| putative permease [Pectobacterium atrosepticum SCRI1043]
          Length = 358

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/355 (10%), Positives = 110/355 (30%), Gaps = 2/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + + +   +V ++ +I+ + ++  V     S       +   +P  + +
Sbjct: 5   LDRYIGKTIFTTIMTTLFMLVSLSGIIKFVDQLRKVGQGEYSALGAGLYTLLSVPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  +   +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLTMAIGEWVSP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   ++     +    +  L+ +  ++                         + 
Sbjct: 125 QGEQMARNYRSQMISGGSMISTQGGLWAKDGNNFIFIERVTGDKELSGVSIYRFDDQNKL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTIVLKA 242
             + YA S   + DR    L+  +    S   +          +           + L+ 
Sbjct: 185 LSVRYAASAEFEDDRNVWKLSQVDESDLSDGKQIGGSQTLSGEWKTNLTPDKLGVVALEP 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++  L N          +    Y+     ++   +   +  L+++            
Sbjct: 245 DALSIRGLHN-YAKYLKQSGQESNRYQLNMWSKIFAPVSVAVMMLMAVSFIFGPLRSVSA 303

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                I IS    F +       +  +   P  +  +      +     L++K++
Sbjct: 304 GSRIVIGISFGFLFYLLNEIFRPLSLVYGIPPILGAILPSSVFLFISVALLLKRR 358


>gi|149190546|ref|ZP_01868816.1| hypothetical protein VSAK1_13861 [Vibrio shilonii AK1]
 gi|148835670|gb|EDL52637.1| hypothetical protein VSAK1_13861 [Vibrio shilonii AK1]
          Length = 371

 Score =  110 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 118/360 (32%), Gaps = 23/360 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L   L +  + +  Q +Q +   S       +++ ++G  +PT+  
Sbjct: 2   IIVRYLIRETVKSQLAIFLVLFLVFFSRQFIQVLADASDGDIPAGLIMTLAGISMPTMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  ++LA+L +     +   + 
Sbjct: 62  LMFPLSIYIGILVTFGRLYAESEITVMNATGIGNKFLIRAAMYLAVLTTSLAAFNAFWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +    Q+  +     +   L+   F R  D   +       +  L  +F+       
Sbjct: 122 PWTQEQEVQIRERLASENSVELLQTGSFQRTPDGSSVVFIDSIKDKKLTNVFVAQLNPRD 181

Query: 183 T-----HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +               +   RQ I L DG  +   P   +  + +F  Y           
Sbjct: 182 SVLPSVISAKSGDVKELSDGRQVIALYDGVRYEGVPTRLEYMVTEFTDYEGVIGQREVQQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LL                 ++E H R++     V   L++++     A
Sbjct: 242 RGRSWMAIPTMELL----------GNPDPKAQAELHWRISL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-----YIPILYLFLFCISSIFLL 352
           +  ++ K   +  ++   F  F   S +   +E   +       P+ +  L     +   
Sbjct: 289 VNPRQSKFAKMGPAILAYFAYFMAISAMKSALEDGAFPSYIGLWPVNFALLLAAIGVNTW 348


>gi|126736392|ref|ZP_01752134.1| putative permease [Roseobacter sp. CCS2]
 gi|126714213|gb|EBA11082.1| putative permease [Roseobacter sp. CCS2]
          Length = 364

 Score =  110 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 116/361 (32%), Gaps = 13/361 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y      RSFL   +    I   + ++ ++    S   +   LL +S   IP    
Sbjct: 2   ILHRYFASRFLRSFLGVGMVFFLIMLFVDLVDQLRRFGSKDATFVDLLMLSLLNIPQAFY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +  S++R++E+++    G S +  +   L +A+L+ IF     N I 
Sbjct: 62  AILPLIMILATIALFLSLSRSSEMVVTRAAGRSALHSLLAPLTVALLVGIFAVGVMNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK----ISKYNPNNTLQGIFIVDS 178
                  +  S   +   +      +  +    +   +        N + TL       +
Sbjct: 122 AGTSKEFEARSDALRGDSSVLSFGSSGLWLRQGNATGQTVIRAQSANLDGTLLTDVTFLT 181

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK---SYTLQTESANS 235
                + I    + S +L   A +L D +  + + ++   +  +     +          
Sbjct: 182 FAPDGNPITRISAASAELTTGAWVLRDAKSWQLAGVTTPEASAQLDAERTVQSTLTPDQI 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  +   +  L     +         + +   FH  L   +F V   LI       
Sbjct: 242 RDSFGTPSSIPIWEL-PAFIDRLQTAGFSAQRHLVWFHTELALPIFLVSMVLIGASFTL- 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIFLLM 353
               R  +    +  ++ ++F  ++  ++    + +N     +L  +   F    I +  
Sbjct: 300 -RHQRGGRTGMMVMFAVLLAFVTYFIRNFAQ-VLGENGQLPVLLAAWAPPFAAIGISMGF 357

Query: 354 I 354
           +
Sbjct: 358 L 358


>gi|251791279|ref|YP_003006000.1| permease YjgP/YjgQ family protein [Dickeya zeae Ech1591]
 gi|247539900|gb|ACT08521.1| permease YjgP/YjgQ family protein [Dickeya zeae Ech1591]
          Length = 356

 Score =  110 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/356 (11%), Positives = 115/356 (32%), Gaps = 2/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YI + I  + +M+   +V ++ +I+ + ++  V     S+      +   +P  +
Sbjct: 3   RVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQGGYSVMGAGLYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGTLATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P     + +      +        ++  +  D + ++ I +    + L G+ I      
Sbjct: 123 APAG-EQMARNYRSQMMYGGSMLSTQSGLWAKDGNDFVYIQRVAGESELLGVNIYHFDKQ 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                    + ++  +    +    E           S      +           + L+
Sbjct: 182 NKLLSVRYAASAVYENGGWKLSQVEESDLSDGKQIGGSQTVSGEWKTNLTPDKLGVVALE 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            +  ++  L +   N      +    Y+     +L   L   +  L+++           
Sbjct: 242 PDALSIRGLYD-YINYLRQSGQEASRYQLNMWSKLFAPLSVAVMMLMALSFIFGPLRSVP 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I IS    F V       +  +   P  +         +    +L++K++
Sbjct: 301 AGMRIVIGISFGFLFYVLDQIFGPLSLVYHIPPVLGASLPSALFLFISIMLLLKRR 356


>gi|218246939|ref|YP_002372310.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8801]
 gi|257060003|ref|YP_003137891.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8802]
 gi|218167417|gb|ACK66154.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8801]
 gi|256590169|gb|ACV01056.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8802]
          Length = 393

 Score =  110 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 122/359 (33%), Gaps = 21/359 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + Y+   I   F         +   +  +   +  V+ S   + + LKI    +P 
Sbjct: 18  LSIMDRYLFIEILLPFFFGMGIFTSLGVAIGTLFDLVRRVTESGLLITVALKILVLKMPG 77

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    +      + ++ ++EL+ + + G S   L+ P +  ++L++   FI  +
Sbjct: 78  FIVLAFPMAMLLAALMAYSRLSSDSELIAMRSLGISIYRLVIPAILFSLLVTGLAFIVND 137

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-------------KISKYNP 166
            I P           KA      S+ E+      +  +                 ++   
Sbjct: 138 WIAPAATHEAAVTLEKAVSKERPSFAEQRNIIYPEYRIIQQEDGKETTVLSRLFYAENFN 197

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
              ++ + I+D      ++I  +QS + ++ +      +G ++  +P     +I++F+  
Sbjct: 198 GEEMEELTILDRSQEDVNQIVTSQSATWNVAQNTWDFFNGTIYIIAPDGSYRNIVRFQHQ 257

Query: 227 TLQTE--SANSSTIVLKANDQNLSFLLNPNP-NNPNYRPELLETYRSEFHKRLTQWLFPV 283
            L+      + +       + +++           +   E +        ++       +
Sbjct: 258 QLKLPRAPLDLANRRQNFTEMSIAQTKEYLEVMKLSGNKERVRKVEVRIQEKYALPFVCL 317

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           +FGL+      +        +     I + + F  ++  S++   +       P L  +
Sbjct: 318 VFGLVGAAMGVRPQNT---SRATSFGICVGLIFS-YYLLSFVTSSLGIWGILTPFLAAW 372


>gi|294637822|ref|ZP_06716094.1| membrane protein, YjgP/YjgQ family [Edwardsiella tarda ATCC 23685]
 gi|291089021|gb|EFE21582.1| membrane protein, YjgP/YjgQ family [Edwardsiella tarda ATCC 23685]
          Length = 356

 Score =  110 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/353 (13%), Positives = 119/353 (33%), Gaps = 2/353 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I  + +M+   +V ++ +I+ + ++  V     S+      +   IP  + +
Sbjct: 5   LDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQGDYSVAGAGLFTLLSIPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++   G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGMLAQRSELVVMQAAGFTRMQVASAVMKTAIPLVLLTMAIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+ Q+        +   +  D + +I IS+   + TL G+ I    D + 
Sbjct: 125 QGDQAARNYRAQ-QMYGGSLLSTQGGLWAKDGNQFIYISQVVNDRTLAGVSIYTLNDQRK 183

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
                  + +    +Q  +    E +  +P     S      +           + +  +
Sbjct: 184 LTSLRYATAATFDGKQWKLTQVEESNLTNPEQITGSRTLTGVWKTNLTPDKLGVVAVSPD 243

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++S L +          +    Y+     ++   L   +  L+++             
Sbjct: 244 SLSISGLYH-YVKYLQQSGQESNRYQLNLWSKIFAPLSVAVMMLMALSFIFGPLRSVPMG 302

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                 I     F V       +  +   P  I  +      ++    L++++
Sbjct: 303 VRVLTGICFGFVFYVLDQIFGPMSLVYNVPPVIGAVLPSALFLAISIYLLLRR 355


>gi|270265133|ref|ZP_06193396.1| hypothetical protein SOD_k01710 [Serratia odorifera 4Rx13]
 gi|270041067|gb|EFA14168.1| hypothetical protein SOD_k01710 [Serratia odorifera 4Rx13]
          Length = 356

 Score =  110 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 113/354 (31%), Gaps = 2/354 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++  V     S       +   +P  + +
Sbjct: 5   LDRYIGKTIFNTIIMTLFMLVSLSGIIKFVDQLRKVGQGDYSALSAGMFTLLSVPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  +   +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGQLATRSELVVMQASGFTRMQIAGSVMKTAIPLVLLTMAIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +    + +     Q+        +N  +  D + +I I +      L G+ I    D + 
Sbjct: 125 QG-DQMARNYRAQQMYGGSLLSTKNGLWAKDGNDFIYIERVAGEKELSGVNIYHFNDQRR 183

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            +     + +   D    +         +      +      +           + L   
Sbjct: 184 LETVRYAATASFEDGVWKLSQVDTSDLTNEKQVTGTQTLTGEWKTNLTPDKLGVVALDPT 243

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++S L N          +    Y+     ++   L   +  L+++             
Sbjct: 244 SLSISGLHN-YVKYLKQSGQEANRYQLNMWSKVFSPLSVAVMMLMALSFIFGPLRSVPMG 302

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 IS    F V       +  +   P  +  L   +  +     +++K+K
Sbjct: 303 VRVVTGISFGFLFYVLDQIFGPLSLVYNMPPVLGALLPSMLFLLISVYMLLKRK 356


>gi|253583477|ref|ZP_04860675.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251834049|gb|EES62612.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 358

 Score =  110 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 121/359 (33%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YIL  +    L       FI  +  I+  +  +     S+  +++I  + +P +
Sbjct: 1   MKIIEKYILEEVKMPILFGISLFTFIFLIDIIVAMMENIIVKGISIIDIMRILSFYLPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      +   R +E   + + G     ++KP+  LA + ++F+F  +  
Sbjct: 61  LSQTIPMGIFLGVMLTFSKFTRTSESTAMSSIGMDLREIVKPIFILACITTLFIFFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+  + ++ ++ K         L+E  F    D+  + I +    + +    ++  +D
Sbjct: 121 IIPRSFTKLQYITTKIAYENPVFQLKEKTFIDEVDEYNLYIDRIEGKDRIAQGVLIFQKD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
                              ++++ D + +      K+    +F    +   +        
Sbjct: 181 EDVEFPTVLVGKEAYWKDSSMVITDSKFYDFDKDGKEKLRGEFDDKKVPLTAYFDGIDIK 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V      ++S L+      P         Y+ E +++L   L  ++  L+ +  +     
Sbjct: 241 VKDIEAMSISMLMKEMKELPKNEKIP---YKVEINRKLALPLSTIMLSLLGVFISIGHHR 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             +          +            + ++ +  P+        +  + + +    K +
Sbjct: 298 SGKGANFALSLAVIFSYITFLNIGMVMANRGKVPPFIGVWTPNIILFLVTFYFYKKKSR 356


>gi|24372947|ref|NP_716989.1| hypothetical protein SO_1369 [Shewanella oneidensis MR-1]
 gi|24347090|gb|AAN54434.1|AE015581_1 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 370

 Score =  110 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 134/371 (36%), Gaps = 25/371 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R + ++ +     ++ I      ++ +   S      +++  + G  +P ++ 
Sbjct: 2   IVFRYLIREVLKAQIAVLFVLLTIFISQHFVRILADASDGEFPASLIATLIGLNLPYLVV 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M    E++I+   G S   + +  L LA++  +F       + 
Sbjct: 62  LVLPLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVA 121

Query: 123 PKCRSTIKQLSAKAQLAL-TFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           P       Q+  KAQ      + ++       +    + + +   +N L+ +F+    D 
Sbjct: 122 PWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELEKVFVAQLPDP 181

Query: 182 QTHKIYYA-------QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                          +        Q + LNDG  ++ SP  KD  +++F  Y +Q +   
Sbjct: 182 NDEIGLTNVVVAKGGRVIEDQNGSQQLQLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQQ 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +   L  LL                  +EFH RL   L   I  LI++  A 
Sbjct: 242 VDERRRKLSALPLGELL----------KIDGPEAVAEFHWRLAIPLAIPIMTLIAVPLA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +  ++ +  G F         +     P Y+ + ++ L  +    LL
Sbjct: 291 --RVNVRQGKFAKMLPAVLLYLGYFGLMVAGRKALQDGVIPLYLGMWWIHLSALIMGILL 348

Query: 353 MIKKK--YTKI 361
           + K +  +T++
Sbjct: 349 LGKDRPLFTRL 359


>gi|325279695|ref|YP_004252237.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
           20712]
 gi|324311504|gb|ADY32057.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
           20712]
          Length = 359

 Score =  110 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 119/363 (32%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           MK  +LYI+R    +F  S + I+ I  V  + +++     +   +  I+       IP 
Sbjct: 1   MKKLDLYIIRKFLGTFFFSLVLILCIVVVFDLSEKLEKFLENEAPVKAIVFDYYKNFIPY 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +     +      + M  ++E++ I +TG S    + P L  A +++I  F+   
Sbjct: 61  FANVFSSLFTFISVIFFTSKMAYDSEIIAILSTGISFRRFLFPYLMSATVIAILSFLLGA 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I P       +   +       +  +               S    +N      I + R
Sbjct: 121 FIIPNANEKRIEFEKQYMGKRYANKEQNIHRQIAPGTYIYMSSYSVASNVGYDFSIENFR 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                    +   + D + +  ++++ ++       +  +  +     +  + +  S   
Sbjct: 181 GDTLVNKLTSSRITWDKENKKWVIHNWKLREIEGDKETYTTGQKLDTVMAFQPSEFSENP 240

Query: 240 LKANDQ-NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            K  +Q     L              +  ++ E +K +       I   I +      + 
Sbjct: 241 KKIREQLTFPELDRYIDRMKMRGSSNVIEFQIEKYKMIANAFATFILTFIGVSI---SSR 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKK 357
             +      + I L ISF  +  F         N    P+L ++L   + +I  + + + 
Sbjct: 298 KIRGGMGLHLGIGLLISFS-YILFMQFSTVFATNGNMNPLLAVWLPNILFAIIGVFVYRT 356

Query: 358 YTK 360
             K
Sbjct: 357 APK 359


>gi|213962435|ref|ZP_03390697.1| permease YjgP/YjgQ family protein [Capnocytophaga sputigena Capno]
 gi|213954761|gb|EEB66081.1| permease YjgP/YjgQ family protein [Capnocytophaga sputigena Capno]
          Length = 358

 Score =  110 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/360 (11%), Positives = 118/360 (32%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F +  +  + I  ++ + ++++ +      +N +L      I   
Sbjct: 1   MKILDWYILKRYLLTFFIMIVLFIPIGIIVDLSEKVDKMIERKAPMNEILWYYLSFIVYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++ I ++G S +  ++P +  A ++S+ +F     
Sbjct: 61  ANILFPILLFLSIIWFTSKLANNTEIIAIQSSGVSYMRFLRPYIVGASIISVIVFFMGMF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P   +       K   +     + +      D+D     S            +     
Sbjct: 121 IVPAASTVYNDFWNKYIRSSKVESVSDLYNQFSDNDYLYVSSFNYQEQKGYNFSVEHFDG 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +   A++       +   L +    +       +            +  +   +  
Sbjct: 181 IKMKEKINAETIQWIDSTKTYRLTNYSKRKIGEGDDILVKRDQLDTIFNFKPDDLMPMEY 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            A ++NL  L              L  Y    ++R        I  LI +      ++ +
Sbjct: 241 TAENKNLFELNKFIEREKMKGSPNLNMYLLVKYRRWGAISTAFILTLIGVAV---SSVKK 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           +      + + + + F   +         + +    P++ + L  +  + L ++  +  +
Sbjct: 298 RGGMGINLMVGVVVGFSFVFFDRVFGTLAQTSGGLSPLMAVVLPNLIFLTLAILLLRKVR 357


>gi|317046772|ref|YP_004114420.1| permease YjgP/YjgQ family protein [Pantoea sp. At-9b]
 gi|316948389|gb|ADU67864.1| permease YjgP/YjgQ family protein [Pantoea sp. At-9b]
          Length = 358

 Score =  110 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/357 (11%), Positives = 113/357 (31%), Gaps = 2/357 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI + I  + +M+   +V ++ +I+ + ++        +       +   +P  +
Sbjct: 3   KVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKTGQGAYTALDAGYYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++ + +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGNLAQRSELVVMQASGFTRMQVALAVMKTAIPLVLLTMAIGEFV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     +   A+          +  L+ +  +           N          S   
Sbjct: 123 APQGEQMARNYRAQQLYGGALVSTQNGLWAKDGNSFIYIERIKGDNQIDGVSIYNFSEQR 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTIVL 240
           +   + YA + + D  ++  +L+  +        +          +           + L
Sbjct: 183 RLLSVRYAATATWDNAKKLWVLSQVDESDLKDAKQITGSQSLSGEWKTNLTPDKLGVVAL 242

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  ++  L N          +    Y+     ++ Q L   +  L+++          
Sbjct: 243 DPDALSIRGLYN-YSKYLKQSGQEAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSV 301

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    IS    F V       +  +   P  +  +       +    LM+K++
Sbjct: 302 SMGVRVVTGISFGFLFYVLDQIFGPLSLVYGIPPILGAVLPSAAFFAISLFLMLKRR 358


>gi|331007487|ref|ZP_08330658.1| putative permease [gamma proteobacterium IMCC1989]
 gi|330418711|gb|EGG93206.1| putative permease [gamma proteobacterium IMCC1989]
          Length = 408

 Score =  110 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/370 (12%), Positives = 127/370 (34%), Gaps = 25/370 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + ++       ++ I    + ++ +   ++      +L  +  Y +P  + 
Sbjct: 30  IIPRYLTKEVLQTTFAVTSVLLIIIMSGRFVKYLAEAAAGKIDARVLFAVMFYRLPGFME 89

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        +  ++E+ ++ + G SR  LI      A ++ I +      + 
Sbjct: 90  LILPLGFFVSILLAYGRLYTDSEMTVLFSCGVSRKQLIAWTYIPAGIVLIIIATLSLWLT 149

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEE-NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           P      +++ A+ Q    F  ++E       +  L       + N      F + + + 
Sbjct: 150 PLGLHEAEKILAQQQARNDFETMQEARFQVSRNKSLVSYTEDISDNREQLNAFFLANMNV 209

Query: 182 QTHKIYYAQSGSIDL-------DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA- 233
              +        +         D++ ++L  G  +   P + +  I +F+ +    +   
Sbjct: 210 GADEPLMTVRSEVAEYKILGETDQRYLVLKRGARYEGQPGTANYRITEFEEFGQHVDPKG 269

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +    K N      LL             L  Y++    RL+  L  +I  L+ ++  
Sbjct: 270 EIAVTNNKVNRLPTVELL----------GSDLPDYQAALQWRLSSPLVVLIVTLLGVLF- 318

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLL 352
                  +R +   +F ++ +        +     +E+        L+   F    + + 
Sbjct: 319 --SHTNPRRGRYAMLFPAILLYLIYLVLLNSARGAVEEQRLSSAIGLWGVHFMFFVLTIS 376

Query: 353 MI--KKKYTK 360
           ++  K+++ +
Sbjct: 377 LLADKQQWKR 386


>gi|261211062|ref|ZP_05925351.1| predicted permease [Vibrio sp. RC341]
 gi|260839563|gb|EEX66174.1| predicted permease [Vibrio sp. RC341]
          Length = 366

 Score =  110 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 118/357 (33%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +    QL  +     +   L++  F R  D   +       N  L  +F+       
Sbjct: 122 PWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLHNVFVAQLAPRD 181

Query: 183 T-----HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +               +   RQ I L DG  +   P   D  I  F SY          +
Sbjct: 182 SVLPSVMFSNSGAVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LL                 ++E   RL+     V   L++++     A
Sbjct: 242 TGRDWEALPTLSLL----------KNADRQAQAELQWRLSL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +  ++ +   +  ++ I    F   S     I ++     I+ L+    + +F  +I
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLTLSATKSAI-EDGSLPVIIGLWPVNAALLFAALI 344


>gi|315179053|gb|ADT85967.1| hypothetical permease [Vibrio furnissii NCTC 11218]
          Length = 367

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/346 (13%), Positives = 114/346 (32%), Gaps = 19/346 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     +  +    + ++ +   S       ++L I G  +P +  
Sbjct: 2   IIVRYLIRETLKSQLAIFFVLFLVFLSQKFIRVLADASDGEIPARLILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+L I+ S     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLGIITSCLAGFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +  ++ +  +     +   L++  F R  D   +       N  L  +F+      +
Sbjct: 122 PWSQDKVQSVMEQLAAENSVDLLQKGQFQRSPDGSSVVFIDNIENKKLSNVFVAQLTPRE 181

Query: 183 THKIYYA-----QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +               +   RQ I + +G  +   P   D  + KF  Y           
Sbjct: 182 SILPSVMFSDAGDVKELSDGRQVITMYNGTRYEGVPTRVDYMVTKFDEYEGLIGQRAVKE 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       L+               + ++E   R++     V   L++++     A
Sbjct: 242 KGRDWEAIPTLELV----------KNADRSAQAELQWRISL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +  ++ +   +  ++ I    F   S     + ++     I+ ++ 
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLAISATKSAL-EDGSIPAIVGMWP 333


>gi|89070357|ref|ZP_01157664.1| putative permease [Oceanicola granulosus HTCC2516]
 gi|89044004|gb|EAR50179.1| putative permease [Oceanicola granulosus HTCC2516]
          Length = 366

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/365 (10%), Positives = 100/365 (27%), Gaps = 14/365 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES-LNILLKISGYLIPTVL 61
               Y  R    SFL        +   + ++++ N VS    +  + +L ++    P  L
Sbjct: 2   ILHRYFARRYLTSFLTVSGLFFVLLGAMDLVEQANEVSDEAAARWSDVLALTLLNAPASL 61

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    + T  +   + R++EL++    G S +  +   + +  L+        N +
Sbjct: 62  YEILPLLVILSTIALFLGLARSSELVVTRAAGRSALHALVAPVLVVALIGAVALAVLNPL 121

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFR------LDDDLYIKISKYNPNNTLQGIFI 175
                   +   +  +         +               +            L G+  
Sbjct: 122 VAATSKEYEARVSALEDRGASIVSVDAGGLWLRQGGPEGQSVIRAARANTDGTELSGVTF 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK--SYTLQTESA 233
           +   +            +        ++             + +  +           +A
Sbjct: 182 ITFAEEGRPSRRIDARRARLEAGVWRLVEAKSWPLGDAGVPEAAAEEHDVYEVATSLTAA 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                    +   +  L     +           ++      L +  F V   LI     
Sbjct: 242 QIRDSFGAPSSIPIWELPR-FIDRLQTAGFSARRHQVWLQTELAKPAFLVAMLLIGAAF- 299

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFL 351
                 R  +      +++ +SFG+++  ++        Q P  +      L  I++   
Sbjct: 300 -TMRHQRGGRTGLMALVAILLSFGLYFLRNFAQILGENGQIPVLLAAWAPPLAGIAASVA 358

Query: 352 LMIKK 356
           L++ K
Sbjct: 359 LLLHK 363


>gi|148242360|ref|YP_001227517.1| permease [Synechococcus sp. RCC307]
 gi|147850670|emb|CAK28164.1| Predicted permease [Synechococcus sp. RCC307]
          Length = 403

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/359 (11%), Positives = 116/359 (32%), Gaps = 19/359 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++   +    L        +   +  + + +  V+ +   + + +++    +P  L
Sbjct: 32  LMDRWLTGELLGPLLFGIAAFTAVTLSVGVLFELVRKVAEAGLPMGVAVQVLFLRLPGFL 91

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T    + ++  +EL  + + G +    + P L LA L+S+  F+  +++
Sbjct: 92  VLSFPMATLIATLLAYSRLSGGSELTALRSIGVATYRFVIPGLVLAGLMSVLTFVFNDVL 151

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI------------KISKYNPNNT 169
            P        +  K+      S    N+ +     +                +K   +  
Sbjct: 152 VPPANRAGYVMLHKSLGRSIDSEKGGNIIYPRYGRVTDGPKDNKERLIQLFYAKEFKDGK 211

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           +  + ++D       ++  A+       R       G +   +      +   F +Y   
Sbjct: 212 MMDVTLIDFSRAGQKQLLSAEEAVFMEGRGTWEFRRGSIINVADRGGRNTTADFNTYYYP 271

Query: 230 TE--SANSSTIVLKANDQNLSFLLNP-NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
                 + +++    N  +++               +     R    ++ +     ++FG
Sbjct: 272 LGEGPLDLASLPKDVNVMSVAEANQALEIIEEAGDRKAARKMRVRLQEKFSFPAICLVFG 331

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           LI   A+       +  +     IS+ + F V++  +++   +       P L  +   
Sbjct: 332 LIG--ASLGSRPNTRTSRSQGFGISVLLIF-VYYLLAFVFSSLGVKGTLTPFLSAWTPV 387


>gi|330811513|ref|YP_004355975.1| permease [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
 gi|327379621|gb|AEA70971.1| Putative permease [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 353

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 111/357 (31%), Gaps = 6/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     I+ +A +   +  ++ V S T +L  +        P  
Sbjct: 1   MVKLDRYIGSSVFMAILAVLGIILGLATLFAFIDEMSDV-SDTYTLTDVASYVLLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  N+EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  LYDMLPMAALIGCLIGLGSLASNSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGVLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P   +T +   + AQ        +  L+ R  D+     S                  
Sbjct: 120 IAPATENTAQANRSLAQGGGDAQSAKHGLWHRQGDEFIHINSVQPNGILYGVTRYRFDDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+  +   D     L+D           ++     + + +       ST+V+
Sbjct: 180 RHMLSSSFAKRANFAED--HWQLSDVTTTLFHDKRTEVVAAPQERWDVSISPQLLSTVVM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +++ L     +    +      Y   F  ++ Q L      L++I         R
Sbjct: 238 APESLSITGL-WGYIHYLADQGLNNGRYWLAFWVKVLQPLVTAALVLMAISFIFGPL--R 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +F  + + F        +        +      L    I ++  L + ++
Sbjct: 295 SVTLGQRVFTGVLVGFTFRIAQDLLGPSSLVFGFSPLFAVLVPAGICALAGLWLLRR 351


>gi|240948567|ref|ZP_04752940.1| permease, inner membrane protein yjgQ [Actinobacillus minor NM305]
 gi|240297075|gb|EER47646.1| permease, inner membrane protein yjgQ [Actinobacillus minor NM305]
          Length = 360

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 120/360 (33%), Gaps = 9/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI + I  +  ++   +V +  +I+ ++    V   +    +    +   IP  
Sbjct: 6   MNVLERYIGKTILSAIFLTLFLLVGLGAIIKFVEEFKAVGKGSYDALLAAYYTFLTIPRD 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L ++   +EL+++  +G SR  +   V+  A+ L +F  I    
Sbjct: 66  VETFFPIAALLGSLLGLGNLASRSELVVMQASGFSRFRIGLAVMKTAVPLILFTMIIGEW 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+      +       +          F+  D + ++ I +      L  + I     
Sbjct: 126 GVPQT-EQYARDMRSVAQSGGSMLSTSGGFWARDGENFVYIRRIGSETQLNNLSIYHFDK 184

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   I  A       D  + IL   E       S   S  K + +      +    + L
Sbjct: 185 KELKSITQAAEAKYTND--SWILKKVEKSTIEGNSIKQSKEKDQPWQTSITPSKLGIVSL 242

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    +++ L +          +  + +   F +++ Q +   +  L++I         R
Sbjct: 243 KPESLSITGLAD-YVGFLKETGQDPKRFEITFWRKVYQPISMAVMMLLAISFIFGPL--R 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI---PILYLFLFCISSIFLLMIKKK 357
                  I I +   F  +       +      +       L   L C+S ++ L+ KK+
Sbjct: 300 SSTMGAKIVIGIVAGFMFYVANIVFGNMSLIATWLPVSIGALIPSLICLSIVWWLLTKKR 359


>gi|113971161|ref|YP_734954.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-4]
 gi|117921444|ref|YP_870636.1| permease YjgP/YjgQ family protein [Shewanella sp. ANA-3]
 gi|113885845|gb|ABI39897.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-4]
 gi|117613776|gb|ABK49230.1| permease YjgP/YjgQ family protein [Shewanella sp. ANA-3]
          Length = 370

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 135/371 (36%), Gaps = 25/371 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R + ++ +     ++ I      ++ +   S      +++  + G  +P ++ 
Sbjct: 2   IVFRYLIREVLKAQIAVLFVLLTIFISQHFVRILADASDGEFPASLIATLIGLNLPYLVV 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M    E++I+   G S   + +  L LA++  +F       + 
Sbjct: 62  LVLPLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-----VD 177
           P       Q+  KAQ     + L +  F    +   +   +    +              
Sbjct: 122 PWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNDLDKVFVAQLPDP 181

Query: 178 SRDTQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           + +     +  A+ G +  D+   Q + LNDG  ++ SP  KD  +++F  Y +Q +   
Sbjct: 182 NDEIGLTNVVVAKGGRVLEDQNGSQQLQLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQQ 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +   L+ L+                  +EFH RL   L   I  LI++  A 
Sbjct: 242 VDERRRKLSALPLTELM----------KVEGPEAVAEFHWRLAIPLAIPIMTLIAVPLA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +  ++ +  G F         +     P Y+ + ++ L  +    LL
Sbjct: 291 --RVNVRQGKFAKMLPAVLLYLGYFGLMVAGRKALQDGVIPQYLGMWWIHLSALIMGILL 348

Query: 353 MIKKK--YTKI 361
           + K +  + ++
Sbjct: 349 LGKDRPLFARL 359


>gi|260772183|ref|ZP_05881100.1| putative membrane protein [Vibrio metschnikovii CIP 69.14]
 gi|260613050|gb|EEX38252.1| putative membrane protein [Vibrio metschnikovii CIP 69.14]
          Length = 356

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 119/355 (33%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      +P  +
Sbjct: 3   KILDWYIGRTIIATTTLVLVTFVGLSGIIKYVEQLRKVGDGSYDLLQALFFVLLSVPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++  +G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALAASSELVVMQASGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +       +           +  D + +I ++K +                
Sbjct: 123 APQAQ-KMARDMRAFATSGGNILSVRTGVWARDANDFIFVAKIDNERLYGLNMWRFDEQK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           Q   + +A+      D   ++        +  +      +    +         + + +K
Sbjct: 182 QLRHVVFAEQVDYLGDNHWLMKQVQITDLQDNVVLTKQYLDVYQWRTALAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             +  LS L +   +      +    Y     ++LTQ     +  L+++           
Sbjct: 242 PEELALSGLYD-YVHYLKASEQDASRYELALWRKLTQPFSIGVMMLMALSFIFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +    +F +   F   +  +   P     +   L  ++   +L+ +K
Sbjct: 301 MGARILSGVIAGFTFYISSEFFGPLSLVYGFPPAFGAIAPSLVFLTIAVMLLRRK 355


>gi|70728450|ref|YP_258199.1| hypothetical protein PFL_1068 [Pseudomonas fluorescens Pf-5]
 gi|68342749|gb|AAY90355.1| membrane protein, putative [Pseudomonas fluorescens Pf-5]
          Length = 353

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 109/357 (30%), Gaps = 6/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     I+ +A +   +  +    + T ++  ++       P  
Sbjct: 1   MVKLDRYIGSSVFMAILAVLGIILGLASLFAFIDEMG-AVNETYTVVDVMSYVALTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +     L S+  N+EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  VYEMLPMAGLIGCLIGLGSLASNSELTIMRAAGVSVGRIVWAVMKPMLVLMLVGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   A AQ +      +  L+ R  D+     +                  
Sbjct: 120 VAPATETQAQASRALAQGSGDAQSSKHGLWHRQGDEFIHINAVQPNGLLYGVTRYHFDDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+      D     L D           ++  +  + + +       ST+V+
Sbjct: 180 RHMLSSSFARQARFHED--YWQLTDVTTTYFRDGHTEVISVPGERWDVALSPQLLSTVVM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                ++S L     +    +      Y   F  ++ Q L      L++I         R
Sbjct: 238 APESLSISGL-WGYIHYLADQGLNNGRYWLAFWVKVLQPLVTAALVLMAISFIFGPL--R 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +F  + + F        +        +      L    I ++  + + ++
Sbjct: 295 SVTLGQRVFTGVLVGFTFRIAQDLLGPSSLVFGFSPLFAVLVPAGICAVAGVWLLRR 351


>gi|255536554|ref|YP_003096925.1| hypothetical protein FIC_02430 [Flavobacteriaceae bacterium
           3519-10]
 gi|255342750|gb|ACU08863.1| membrane protein, putative [Flavobacteriaceae bacterium 3519-10]
          Length = 364

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 120/365 (32%), Gaps = 12/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILL-KISGYLIPT 59
           MK  +L+I++    +F      +  I  +I +  +   + S+  S+   L     Y I  
Sbjct: 1   MKIIDLHIIKKYLGTFAFMLGLLTLIVLIIDVQAKAPRIESNGFSVTEFLINFYPYWIVN 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++         +      + M  NTE++ I ++G S     +P L  +  ++    +  +
Sbjct: 61  LIITFMSILVFISVIFFTSRMANNTEIVAIISSGASFHRFARPYLITSSFIAAIALLLNH 120

Query: 120 IIEPKCRSTIKQL--SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
            + P       +L        +         +  +L    YI I  YN        F+  
Sbjct: 121 FVLPLANVKKNELEPYTYTAKSREEYIGNTEVSTQLSKSEYIFIKSYNRKERRGSGFMYQ 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D      Y   +     D +           K+    +   +       ++       
Sbjct: 181 KFDKNRKLTYQIIANEFSWDDKKSHFILNSYLEKTVRKDETEKLGSGDTMTKSFGHPPEE 240

Query: 238 IVLKA---NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +        ++    L+             L  Y++E H+R +  +  +I   + +  A 
Sbjct: 241 LFPGVLLGQNKTTPDLIGFIDREKEKGNANLGNYQNELHQRTSMPVSVIILTFLGLSLA- 299

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLL 352
             +  ++      + I +S++F   + F  +   + +N    P+L ++L       + L 
Sbjct: 300 --SQKKRGGLGMNLAIGISLAFVFVFSFEAL-KVVSKNQSLPPLLAMWLPNLIFGPVALY 356

Query: 353 MIKKK 357
           +  K+
Sbjct: 357 LYLKR 361


>gi|167856192|ref|ZP_02478929.1| hypothetical protein HPS_08251 [Haemophilus parasuis 29755]
 gi|167852681|gb|EDS23958.1| hypothetical protein HPS_08251 [Haemophilus parasuis 29755]
          Length = 355

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 111/357 (31%), Gaps = 4/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R I  S +++   +V +  +I+ ++    V   +         +   +P  
Sbjct: 1   MNVLERYIGRTILASIMLTLFMLVGLGAIIKFVEEFRSVGRGSYDGLHAAYYTLLTMPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L  +   +EL+++ + G SR  +   V+  AI L +   I    
Sbjct: 61  IETFFPIAALLGSLMGLGGLASRSELVVMQSAGFSRFRIGLAVMKTAIPLMVLTMIMGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+      +       +       +  F+  D + +I I +      L  I I    +
Sbjct: 121 GVPQT-EQYARNMRSIAQSGGSMLATQGGFWAKDGNDFIYIRQIQDERNLNNILIYQFDN 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                I  A+  +     Q  +L   +           +    +++      +      L
Sbjct: 180 QVLKSIKQAEKATY--SEQGWLLQKVDKSEIHESGITQTRETDQTWKTSITPSKLGIASL 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++S L +          +  + +   F +++ Q +   +  L++I          
Sbjct: 238 KPESLSISGLAD-YVGFLKDTGQDPKRFEITFWRKVFQPISMAVMMLLAISFIFGPLRSS 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I I     F V       +  +           +      S+   ++ KK
Sbjct: 297 TMGAKIVIGILTGFVFYVANIVFGNLSLVVSWLPVPIGALIPSLLCLSVVWWLLNKK 353


>gi|317486218|ref|ZP_07945052.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
 gi|316922517|gb|EFV43769.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
          Length = 357

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 109/355 (30%), Gaps = 7/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+ +      L +    + +  +  + +R++    +  S+ ++L      +P V
Sbjct: 1   MSLLFRYLTKNNAMILLPTLAVGIGLYVLTDLFERLDNFIEAGLSVGMVLTYFVVKMPLV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P  F + T   L  M R+ EL  +   G S   +   ++   I            
Sbjct: 61  ISQILPVIFLLSTVIQLCIMARSRELTALQAGGISLGVVANSMILCGIFWGGVQLGFSEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +         ++  +       +       +  D D  + +   +P     G    +  D
Sbjct: 121 LGVAGERESARIWQEEVRKKNLAATVLKDVWFTDGDWIVSLGTLDPQAHGTGFSGYELSD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                    Q+ +   +     L D  V+     +++             E+    +   
Sbjct: 181 DGLSIKRIVQASTFTAEPNHWALQDVRVYTPDTFTQEQEPDFVLPLRQDPETFRLVSTGT 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K     L  L +   +        +E  R+ +H +L      ++   ++           
Sbjct: 241 KPQQLPLWQLGDA-ISQLKSSGSNVEALRTAWHAKLAYAASILVMAFVATAIV-----SW 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           +      + ++L  +F +++    +   + Q     P L  +   + ++F    +
Sbjct: 295 KDNIYIAVTVALLCTF-LYFAVYTLGTTLGQRGILHPFLAAWTANLIALFFAFWR 348


>gi|163803712|ref|ZP_02197572.1| putative permease [Vibrio sp. AND4]
 gi|159172495|gb|EDP57360.1| putative permease [Vibrio sp. AND4]
          Length = 366

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 120/357 (33%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + +  +   S       ++  + G  +P +  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFLSQKFISVLAKASDGDIPAGLIFSVVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     L++  L LAI+ S     +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALCLAIITSGVAAFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +  ++QL  + +   +   L++  F    D   +       ++TL  +F+   R   
Sbjct: 122 PWSQDRVEQLYDQVEAENSVDLLQKGQFQGTPDGSSVVFIDDIKDSTLSNVFVAQMRPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +           +   +   RQ I ++DG  +   P   +  + KF  Y           
Sbjct: 182 SVLPSVMFSSSGEVKELSDGRQVITMHDGSRYEGVPTRVEYMVTKFDQYEGVIGQREVKQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       L+                 ++E   R++ +   V   L++++     A
Sbjct: 242 KGRDWEAYPTLDLI----------GHPDPEAQAELQWRISLF---VCIPLLTMLVIPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +  ++ +   +  ++ I    F   S     +E+       + ++      + + ++
Sbjct: 289 VNPRQGRFAKMGPAILIYLAYFLAISATKSALEE-GTIPAAIGMWPINAMLLIVAIL 344


>gi|149190545|ref|ZP_01868815.1| predicted permease [Vibrio shilonii AK1]
 gi|148835669|gb|EDL52636.1| predicted permease [Vibrio shilonii AK1]
          Length = 356

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 122/357 (34%), Gaps = 3/357 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  ++Y+ + I  + ++     V ++ VI+ ++++  V   + ++   L      +P  +
Sbjct: 3   RILDVYVGKTIITTIILVLSVFVGLSAVIKFVEQLRSVGEGSYTMLSALYFVILGMPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +       + +   L  +  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  ELFFSMAALLGSLVGLGMLASSSELVVMQAAGISKLRIGLSVLKTAVPLMVVVMALGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +  + +       +        N  +  D + +I ISK N  +           + 
Sbjct: 123 APTTQ-QMARDLRLQATSGGSIVSVRNGVWARDANDFIFISKVNGESVEGLNIWRFGENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           Q  +  +A+S     D +  +        K+  +     +  + +         + + + 
Sbjct: 182 QLKETVFAESADYLGDNRWEMHRIQITDMKNDEALSKETLDKQVWETSLVPDKLAIVTVD 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            N+  LS L            +    Y   F ++ TQ +   +  L+++           
Sbjct: 242 LNELPLSGL-WDYTQYLKDSEQDASRYELAFWRKATQPISVAVMMLMALSFVFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                   +    +F +   F   +  +         L        +I +L++++K 
Sbjct: 301 MGARILSGVIAGFTFYISSEFFGPVSLVYGMSPLFGAL-GPSLVFLTIAMLLLRRKL 356


>gi|329962824|ref|ZP_08300709.1| permease, YjgP/YjgQ family [Bacteroides fluxus YIT 12057]
 gi|328529381|gb|EGF56294.1| permease, YjgP/YjgQ family [Bacteroides fluxus YIT 12057]
          Length = 378

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 127/363 (34%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S     N I+       IP 
Sbjct: 20  LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWNAIVFDYYLNFIPY 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A +++I  F   +
Sbjct: 80  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAIVTFSLGS 139

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P+   T      K       +           + +       + + T     +   R
Sbjct: 140 YVIPRGSVTRINFEDKYYKPRKANTARNIQLEVDSNVIAYIERFEDYSKTGYRFSLDKFR 199

Query: 180 DTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           D Q      A+S + D        + D  +     + + I+       TL  E A+   +
Sbjct: 200 DKQLVSHLTARSITYDTASIHKWTIKDYMIREMDGMKESITKGDRIDTTLFMEPADFLIM 259

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        L              ++ +  E+HKR+       I  LI +      + 
Sbjct: 260 KNQQEMLTSPQLSEYIDRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSL---SSK 316

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKK 357
             +      + I L++SF  +  F  I      N    P++ +++   + +     + KK
Sbjct: 317 KTKGGMGLHLGIGLALSFS-YILFQTIASTFAVNGNVPPVIAVWIPNVLYTFIAFYLYKK 375

Query: 358 YTK 360
             K
Sbjct: 376 APK 378


>gi|220935306|ref|YP_002514205.1| permease YjgP/YjgQ [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996616|gb|ACL73218.1| permease YjgP/YjgQ [Thioalkalivibrio sp. HL-EbGR7]
          Length = 353

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 118/357 (33%), Gaps = 5/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI R +    L++ L +  +  +   +  ++ +  +   L   +  +   +P  
Sbjct: 1   MKRLDAYIARNVMGGTLLAMLVLGGLDTLFAFIAELDEIGRNDYGLIQAVVYTALTVPRR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + +   L ++  N+EL  +   G     +++ VL   +++ + + +    
Sbjct: 61  VYELFPTSVLLGSLLSLGALAANSELTAMRAAGVPIAGIVRSVLRAGLMMLVVVVLLGEA 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P         + K+Q +    Y      +  D   +I++    P+  L  + I +   
Sbjct: 121 VAPMSEQR--AQTIKSQASGEEMYRGSAGLWAKDGQRFIQVGVVMPDLRLLDLSIYELDA 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +       ++GS      A IL D E             +  + +         S + +
Sbjct: 179 -ERRLSSMLRAGSASYQNGAWILRDIERSHLGEAGVTGEHVDEERWPRLLAPELFSVLAV 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +      + L                ++   F  R T  L  ++  L+++          
Sbjct: 238 EPRQMAATTL-AQYVTYLRENDLDSASFELAFWMRFTTPLSSLVMLLLAVPFVFGSLRTG 296

Query: 301 QRKKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              +   I + + + F +     +++       P     L   +F   ++  L   +
Sbjct: 297 GAGQRLFIGLLIGVGFHLLNRTLNHMGLVYGLPPMLSATLPTLIFFAVAMLALRRVR 353


>gi|117925963|ref|YP_866580.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
 gi|117609719|gb|ABK45174.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
          Length = 371

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 120/365 (32%), Gaps = 11/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           M     Y+L+   + F+      + + +++   ++I         +   ++++    +P 
Sbjct: 1   MPILFRYLLQLFLQGFVKVFSIFIALFFLMDGAEQIRRFGGRDHVIWQDMVELIFLRMPH 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                 P    + T  V+T + R  EL +I + G S + ++ P L   ++++    +  +
Sbjct: 61  FFTQFLPPIALLTTLFVVTRLTRLNELTVIRSGGVSLVRILIPFLLGGVMVAGVQMLLLD 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF----- 174
            I P+  +  ++   +  L    +  E  +         + I         +  +     
Sbjct: 121 QIVPRTNAAAERSIFRMNLPEQAALYESMVSLEGVRKDNLWIRDGGQILHAKRAYGDKRL 180

Query: 175 ----IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
                +     +   +  A +     + +  +L++G+++R +  +          + +  
Sbjct: 181 LLEVTIFRFTPEHDLLMRADAHKATWENEGWVLHNGQIYRFNGHTTQSEPFTRMPWAINL 240

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           E         +  + +L   L  + +           Y    +++L   L  +   L++ 
Sbjct: 241 EKEQIKRATPQPEELSL-QALWKHADRLAREGYDATPYWVTLYRKLADPLTTLAAILLAF 299

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             A +   +    +   +         V       +   E+ P ++      +F I    
Sbjct: 300 PFALRLHRMGGTFRSMLMGFITGFFMFVVVDLFTALGFGERLPPFLAAFAPVMFFICIGG 359

Query: 351 LLMIK 355
            L++ 
Sbjct: 360 FLLLH 364


>gi|224539916|ref|ZP_03680455.1| hypothetical protein BACCELL_04827 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518470|gb|EEF87575.1| hypothetical protein BACCELL_04827 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 391

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 126/363 (34%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S       I+       IP 
Sbjct: 33  LKRLDFYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWKAIIFDYYLNFIPY 92

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A +++I  F   +
Sbjct: 93  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAIVTFFLGS 152

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I P+   T      K       +             +       + + T     +   +
Sbjct: 153 YIIPQGSVTRINFEDKYYKQRKSNTARNIQLEVDSGVIAYIERFEDYSKTGYRFSLDKFK 212

Query: 180 DTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           D Q      A+S + D       I+ D  +     + ++I        TL  E A+   +
Sbjct: 213 DKQLVSHLTARSITYDTASVHKWIIKDYMIREMDGMKENIVKGDRIDSTLFMEPADFLIM 272

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        L              ++ +  E+HKR+       I  LI +      + 
Sbjct: 273 KNQQEMMTSPQLSEYISRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSL---SSK 329

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKK 357
             +      + I L++SF  +  F  I      N    P++ +++   + +     + +K
Sbjct: 330 KTKGGMGLHLGIGLALSFS-YILFQTIASTFAVNGNVPPVIAVWIPNILYAFIAFYLYQK 388

Query: 358 YTK 360
             K
Sbjct: 389 APK 391


>gi|114048399|ref|YP_738949.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-7]
 gi|113889841|gb|ABI43892.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-7]
          Length = 370

 Score =  109 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 136/371 (36%), Gaps = 25/371 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R + ++ +     ++ I      ++ +   S      +++  + G  +P ++ 
Sbjct: 2   IVFRYLIREVLKAQIAVLFVLLTIFISQHFVRILADASDGEFPASLIATLIGLNLPYLVV 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M    E++I+   G S   + +  L LA++  +F       + 
Sbjct: 62  LVLPLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILALINMLFTGYLSLYVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-----VD 177
           P       Q+  KAQ     + L +  F    +   +   +    +              
Sbjct: 122 PWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELDKVFVAQLPDP 181

Query: 178 SRDTQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           + +     +  A+ G +  D+   Q + LNDG  ++ SP  KD  +++F  Y +Q +   
Sbjct: 182 NDEIGLTNVVVAKGGRVQEDQNGSQQLHLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQQ 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +  +L+ L+                  +EFH RL   L   I  LI++  A 
Sbjct: 242 VDERRRKLSALSLADLM----------KVEGPEAVAEFHWRLAIPLAIPIMTLIAVPLA- 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +  ++ +  G F         +     P Y+ + ++ L  +    LL
Sbjct: 291 --RVNVRQGKFAKMLPAVLLYLGYFGLMVAGRKALQDGVIPQYLGMWWIHLSALIMGILL 348

Query: 353 MIKKK--YTKI 361
           + K +  + ++
Sbjct: 349 LGKDRPLFARL 359


>gi|118580062|ref|YP_901312.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
 gi|118502772|gb|ABK99254.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
          Length = 359

 Score =  109 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 143/363 (39%), Gaps = 10/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI     R  L+     + I  V+ +++RI        +L  + +   + +P +
Sbjct: 1   MTIIDRYIAMTWLRLLLLCQGSFLSIYLVLDMMERIPRFLRVQGALVDIARFFAWKLPEM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +     F   M T   L  + R++E++ + + G S   +  P+L L   +S+ L ++  +
Sbjct: 61  IGQTAAFSVLMATLLTLGLLTRSSEIVAMRSCGISLPRISLPMLLLGGGVSLLLLVNAEL 120

Query: 121 IEPKCRSTIKQLSA-KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           I P     + ++     +     +  + N  +   D+  ++   ++P + +    +V S 
Sbjct: 121 IVPDSYERMSRIERVDIKKQAGSAVFKRNNIWFRSDNRIMQARLFDPRSQVLRGVVVWSL 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTI 238
           D  T+ +    + S +L  ++ +L   E+   +      +  +  +S  L  +  +   +
Sbjct: 181 DQYTNPLSRLDAESAELRGESWLLRGVELKEFTAGEGVVVRKLPTRSIDLNLKVDDLRVL 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A++ +   L     +N          YR+  H +    L  ++  ++ I  A +   
Sbjct: 241 DKNADNLSFGKL-REYADNLRKGGYEDFKYRTMMHTKFAAPLSALVMVILGIPFALRG-- 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMI 354
            R       +  S++I F  ++  + ++    ++    P++  +    LF +  ++L M 
Sbjct: 298 SRSGGVAMGVGASVTIGFA-YFVVNAVLLSYGRSGVLPPLVAAWGANFLFILGGLWLTMS 356

Query: 355 KKK 357
            + 
Sbjct: 357 IRN 359


>gi|307129164|ref|YP_003881180.1| hypothetical protein Dda3937_01300 [Dickeya dadantii 3937]
 gi|306526693|gb|ADM96623.1| conserved inner membrane protein [Dickeya dadantii 3937]
          Length = 356

 Score =  109 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 115/356 (32%), Gaps = 2/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YI + I  + +M+   +V ++ +I+ + ++  V     S+      +   +P  +
Sbjct: 3   RVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQGGYSVMGAGLYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGTLATRSELVVMQASGFTRLQIAAAVMKTAIPLVLLTMAIGEWM 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P     + +      +        +   +  D + ++ I +    N L G+ I      
Sbjct: 123 APAG-EQMARNYRSQMMYGGSMLSTQGGLWAKDGNDFVYIQRVAGENELAGVNIYHFDKQ 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                    + ++  +    +    E   +       S      +           + L 
Sbjct: 182 SKLLSIRYAASALYENGTWKLSQVEESDLRDSKQIGGSQTVSGEWKTNLTPDKLGVVALD 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            +  ++  L +   N  +   +    Y+     +L   L   +  L+++           
Sbjct: 242 PDALSIRGLFD-YINYLHQSGQEASRYQLNMWSKLFAPLSVAVMMLMALSFIFGPLRSVP 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I IS    F V       +  +   P  +         +    +L++K++
Sbjct: 301 AGVRIVIGISFGFLFYVLDQIFGPLSLVYHIPPVLGASLPSALFLFISIMLLLKRR 356


>gi|304382916|ref|ZP_07365398.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304335941|gb|EFM02189.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 402

 Score =  109 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 118/360 (32%), Gaps = 8/360 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  + YI+R    +++ +   I+ I+ V  + + +   S     L  I+       +P  
Sbjct: 43  KRLDRYIIRKFIGTYIFAIALIISISIVFDVNENLAKFSEYKAPLKAIVFDYYMNFVPYF 102

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ +   G S   LI+P +F  +L+S   F     
Sbjct: 103 ANLFSPLFVFIAVIFFTSKLAGNSEIISMLAAGISFRRLIRPYMFSCVLISGLSFYLSAY 162

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +      +     +  E          +       N      G  +    +
Sbjct: 163 VIPHGTVIRQNFETLYKNKKKNTSAENVQLQVGKGVIAYMKLYDNTIKKGYGFCLYKFEN 222

Query: 181 TQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +      A       I   +      D ++ +   + + I+    K   LQ E  +   
Sbjct: 223 KKLVSHMTASEIQYDTISDSKYHWKAMDWKIRQLRGLREKITSGITKDTVLQMEPTDLVY 282

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +        LL+      +     +  Y+ E+HKR+       I  +I +      +
Sbjct: 283 SKGQQETFTSPQLLDYISKQIDRGSGNVVQYQVEYHKRIASSFASFILTIIGVSL---SS 339

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R+      + I L++SFG +     +      N    PIL  +L  I   F+     +
Sbjct: 340 RKRKGGMGLYLGIGLALSFG-YIMLQTVSSTFAINANTPPILAAWLPNIIFAFVAYFCYR 398


>gi|159030859|emb|CAO88538.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 387

 Score =  109 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/364 (9%), Positives = 121/364 (33%), Gaps = 21/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + Y++  +   FL S      +   +  +    N V  +   L   L+I    +P  +
Sbjct: 16  LIDRYLISQLLPPFLFSVGLFASLGVAISNLSDLANQVVDANLPLASALEILLLKVPEFV 75

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    + T      ++ ++E + + + G +   L  P   L++++++  F+    +
Sbjct: 76  TYSLPVSLLLATLITYGRLSSDSETVALQSCGVTLYRLFIPTFCLSLIVTVVTFLLNEYV 135

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI------------KISKYNPNNT 169
            P       ++  +        +  ++ ++   +   +              ++      
Sbjct: 136 VPNANYRATEILVQKINKEANFWKNKDFYYPDYEIKTLENGTINRNLRSLFYAEQFDGEK 195

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISI---MKFKSY 226
           ++ + ++     + ++I  A S   +         +G ++  +P +   S     K +  
Sbjct: 196 MKTVTVIRWLKEELNQIIIADSARWNAVDNVWDFFNGIIYELTPPNASYSQVIPFKTEKI 255

Query: 227 TLQTESANSSTIVLKANDQNLSFLLNP-NPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
            L   + + +       + N+   +        +   + +  ++    +++      ++F
Sbjct: 256 ALSRSAFDFARQSRDPYEMNIPQAIEYVQLLKLSGDEKRVRFFQVRIQQKIAFPFVCIVF 315

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
             I          + +        +S++I F +++  ++++  +       P L  +L  
Sbjct: 316 ATIGCALGSLPQRISRG---TSFGLSVAIVF-LYYLLNFLVGSLGLTATLSPFLAAWLPN 371

Query: 346 ISSI 349
               
Sbjct: 372 FFGF 375


>gi|209694120|ref|YP_002262048.1| putative permease [Aliivibrio salmonicida LFI1238]
 gi|208008071|emb|CAQ78212.1| putative permease [Aliivibrio salmonicida LFI1238]
          Length = 370

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 121/360 (33%), Gaps = 22/360 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++   +S L     +  I    + +Q +   S       ++L + GY +P +  
Sbjct: 2   IIIRYLIKETLKSQLAIFFVLFLIFMSQKFIQILADASDGDIPGGLILSLVGYNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++      ++   + 
Sbjct: 62  LMLPLSIFIGILLTFGRLYAESEITVMNATGMGNSILIRAALYLALITGSIAAVNSLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR-LDDDLYIKISKYNPNNTLQGIFIVDSRD- 180
           P  +    +L    +       L++  F    D    + I   +       + I  ++  
Sbjct: 122 PWSQEQSTKLMENVESDAGIELLQKGQFKPSPDGKAVVFIDDISDKGGKHLVNIFLAQPV 181

Query: 181 ------TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                              +D  RQ ++L++G  +   P   D     F+SY +      
Sbjct: 182 PNDSLRPSVLISEKGTVKQLDDGRQVLVLDNGTRYEGIPTRLDYLESNFESYEVLIGQKE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                   +      L+                 ++E   R++     +   L+++V   
Sbjct: 242 VKEKRRDWDALPTLDLI----------KRTELEAKAELQWRISL---ILCIPLLTMVVVP 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLM 353
             A+  ++ +   +  ++ +    F   S     IE+   +  + L+     +  I +++
Sbjct: 289 LSAVNPRQGRFAKLAPAILLYLAYFLSLSAGKSAIEEGSLHPSVGLWAINAVLLIIGIIL 348


>gi|311281180|ref|YP_003943411.1| permease YjgP/YjgQ family protein [Enterobacter cloacae SCF1]
 gi|308750375|gb|ADO50127.1| permease YjgP/YjgQ family protein [Enterobacter cloacae SCF1]
          Length = 360

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 117/354 (33%), Gaps = 2/354 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + LM+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTILTTILMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDIQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVAISVMKTAIPLVLLTMAIGEWMAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     + L A+A    +    ++ ++ +   +          +          +   + 
Sbjct: 127 QGEQMARNLRAQAMYGSSLLSTQQGMWAKDGHNYIYIERIKGADELGGISIYSFNDKRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   D D++   L+  +     +P+    S     ++           + L  
Sbjct: 187 QSVRYAASAKFDADKKVWRLSQVDESNLTNPLQITGSQTVSSTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLYN-YVKYLKSSGQDPGRYQLNMWSKVFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  IS    F V       +  +   P  +  L            LMI++
Sbjct: 306 GVRVITGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSATFFLISLWLMIRR 359


>gi|332704119|ref|ZP_08424207.1| permease YjgP/YjgQ family protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554268|gb|EGJ51312.1| permease YjgP/YjgQ family protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 396

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 125/358 (34%), Gaps = 10/358 (2%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           ++ + +  +F++    ++ +  + ++LQ   L    +  +  + ++  YL P  L ++ P
Sbjct: 14  HVFKELLLTFIICLGSLLTLILIGRMLQLKELFLGQSLGVMEIGRLFFYLSPFFLQLLMP 73

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +        ++ + EL+ +   G S   L+   +    L  +              
Sbjct: 74  ISCMLAIFLTFLRISSDRELIALKAGGVSLYKLLPSPVLFCCLCCVANLAVAFWGISWGM 133

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
              +    +     T   ++   F      L I   +Y+P N  ++ IF+ DSR  +T  
Sbjct: 134 DNFRAEVLEFARNRTQIMIQPGTFNSDFPGLTIFAEQYDPGNKEMRLIFVQDSRGDETSA 193

Query: 186 IYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSSTIV 239
              A+ G +  D++      +LNDG ++R +               L             
Sbjct: 194 TIVAEKGRVVTDKERGRLQFLLNDGAIYRTAKDQVHTLKFVSYLVNLDIWKTFNAEQLSE 253

Query: 240 LKANDQNLSFLLNPNPNNPNYRPEL---LETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +  + ++  L     +    +      +     E  KR T  +  ++ GL ++  A   
Sbjct: 254 TRPREMSIMNLRRLAADPDLAKKRDEDYVRKVNVEIQKRYTLPVACLVLGLFALPFACSF 313

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             V+Q   +        + + ++     +       P+    L   +F +S+IF + +
Sbjct: 314 QGVKQYVGVLMALGMFIVYYSLYSISISLGESGFLAPWIGLWLPNVIFFVSAIFGIRL 371


>gi|298206762|ref|YP_003714941.1| hypothetical protein CA2559_00860 [Croceibacter atlanticus
           HTCC2559]
 gi|83849393|gb|EAP87261.1| hypothetical protein CA2559_00860 [Croceibacter atlanticus
           HTCC2559]
          Length = 359

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 115/362 (31%), Gaps = 8/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F+   L  + I   + + ++I+ + ++      + +         
Sbjct: 1   MKILDWYILKRYLGTFVTLLLLFIPIGITVNLAEKIDKILANDVPFIEVAEYYLNFTIYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++   ++G S    ++P L  A ++ +   I    
Sbjct: 61  ANLLFPLFLFLSVIWFTSKLANNTEIIAFLSSGVSFYRFLRPYLIGATIVCLLALIMGMY 120

Query: 121 IEPKCRS--TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           + P         + +            +       +D++    +      +     +   
Sbjct: 121 LAPSASKGFNEFKYTYLKSGGDNQQETKNVYRQINEDEVIYATNFNPSRQSALNFTLEHF 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +D        A     + +     L +            +   +     L  E    +  
Sbjct: 181 KDNVLEYKISASRLQYNKEDTTYTLTNFNKRLVGARGDSLIHYRKLDTILPFEFDELTPN 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A   N + L     +        L  Y    +KR +  +   I  +I++      A+
Sbjct: 241 SYVAETLNFNELNKFIEDEKRRGSGNLNRYLVVAYKRWSTPVSAYILTIIAVAV---SAM 297

Query: 299 VRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            R+      + I ++++F   +       I  + + +P          F I +I+LL   
Sbjct: 298 KRRGGMGINLAIGIAVAFSFVFLDKVLGTIAEQSDFSPLVAVWFPNVSFGILAIYLLYNA 357

Query: 356 KK 357
           K+
Sbjct: 358 KR 359


>gi|84516313|ref|ZP_01003673.1| Predicted permease [Loktanella vestfoldensis SKA53]
 gi|84510009|gb|EAQ06466.1| Predicted permease [Loktanella vestfoldensis SKA53]
          Length = 369

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/351 (14%), Positives = 130/351 (37%), Gaps = 5/351 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L  +        L +V +  + + +   + + +  +S  + ++ +   +P+V+ +  P 
Sbjct: 1   MLSQLIMLCGFFGLVLVLVYSINRAVLLFDQLIADGQSAGVFVEFTALTLPSVIRLALPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                   V   M  ++EL+++  TG S   + +PVL+  +++++ + +  + + P+  +
Sbjct: 61  AAFAAAIYVTNRMTNDSELVVVQATGYSLFRIARPVLYFGLIVALLMSLLMHFLVPRSAA 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            +     +    +T   L    F      +   I   +P+  L  +F+ D+R  +    Y
Sbjct: 121 QLALRQTEIARNVTARLLTPGTFTEPIAGVTFYIRDLSPDGELFDLFLSDTRGIEDQVTY 180

Query: 188 YAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSSTIVLKAN 243
            A    +  +     +++ DG V       + +   +F  ++          +    +A+
Sbjct: 181 TASRAFLVREAQETQLVMIDGMVQTLRLADQRLFTTRFAEFSYNVGGLLAPVTQAGRRAS 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             +   LL+P P              ++ H R +Q L  ++  LI        +  R   
Sbjct: 241 HLSTWELLHPTPALVAETGSSAARMIADGHDRFSQSLLGMVAALIGFATLMVGSYSRFG- 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               I  ++++   V    +  ++    +     + YL       I   ++
Sbjct: 300 VWRQIVAAIALIVVVKALETAGLNAARADAQLWFLTYLPGAGGLVIVWCLL 350


>gi|330504705|ref|YP_004381574.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina NK-01]
 gi|328918991|gb|AEB59822.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina NK-01]
          Length = 374

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/370 (12%), Positives = 125/370 (33%), Gaps = 26/370 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   +       +L  I GY IP  L 
Sbjct: 2   IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLFLIMGYRIPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +  ++E+ ++  TG S+  L    +  A+++++ +      + 
Sbjct: 62  LILPLGLFLGFLLAYGRLYLDSEMTVLSATGVSQQRLTAYSMAPALIVALLVGWLSLGLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--------RLDDDLYIKISKYNPNNTLQGIF 174
           P+  +++ ++ ++         L    F             +L    S+       +  F
Sbjct: 122 PQGVASVARILSEQDALTELDTLVPGRFQSLRDGSRVTYSQELSPDRSELRGVFMSEKRF 181

Query: 175 IVDSRDTQTHKIYYAQSGS--IDLDRQAI-ILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
             D R  +   +  A+SG   I  D     IL +G  +   P   D   +++ +Y +   
Sbjct: 182 STDGRSERGITVLVAESGRQEIQDDGSRYLILENGYRYDGEPGEADYRAIQYDTYGVLLP 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               +    +        LL                 ++E   RL+  L   I  L+++ 
Sbjct: 242 KPEVAIEASEREATPTRELL----------GSSDPRMQAELQWRLSLPLLVFIVTLLAVP 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSI 349
                 +  ++ +   +  ++ +              +   + P  + + ++    ++  
Sbjct: 292 L---SKVNPRQGRFLKLLPAIFLYMAYLGLLIAARGALDKGRLPAALGLWWVHGIFLAIG 348

Query: 350 FLLMIKKKYT 359
            LL+  ++ +
Sbjct: 349 LLLLYWERLS 358


>gi|157368809|ref|YP_001476798.1| permease YjgP/YjgQ family protein [Serratia proteamaculans 568]
 gi|157320573|gb|ABV39670.1| permease YjgP/YjgQ family protein [Serratia proteamaculans 568]
          Length = 356

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 112/354 (31%), Gaps = 2/354 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++  V     +       +   +P  + +
Sbjct: 5   LDRYIGKTIFNTIIMTLFMLVSLSGIIKFVDQLRKVGQGEYTALSAGMFTLLSVPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  +   +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGQLATRSELVVMQASGFTRMQIAGSVMKTAIPLVLLTMAIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +    + +     Q+        +N  +  D   +I I +      L G+ I    D + 
Sbjct: 125 QG-DQMARNYRAQQMYGGSLLSTKNGLWAKDGTDFIYIERVAGEKELSGVNIYHFNDQRR 183

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            +     + +   D    +         +      +      +           + L   
Sbjct: 184 LETVRYAASASFEDGVWKLSQVDTSDLTNEKQVTGTQTLTGEWKTNLTPDKLGVVALDPT 243

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++S L N          +    Y+     ++   L   +  L+++             
Sbjct: 244 SLSISGLHN-YVKYLKQSGQEANRYQLNMWSKVFSPLSVAVMMLMALSFIFGPLRSVPMG 302

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 IS    F V       +  +   P  +  L   +  +     +++K+K
Sbjct: 303 VRVVTGISFGFLFYVLDQIFGPLSLVYNMPPVLGALLPSMLFLLISVYMLLKRK 356


>gi|317969817|ref|ZP_07971207.1| permease [Synechococcus sp. CB0205]
          Length = 400

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/358 (12%), Positives = 114/358 (31%), Gaps = 21/358 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++   +    L        ++  + ++ + +  V+ +   L    K+    +P  L
Sbjct: 27  LLDRWLFAEMLGPLLFGIAAFTAVSLSVGVVFELVRKVAEAGLPLWAAGKVLALRMPGFL 86

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M T    + ++ ++EL  + + G     ++ P L LA L+++  F+  ++I
Sbjct: 87  VLSFPMATLMATLLAFSRLSGSSELTALRSIGVKTWRMVVPALVLAALMTLLTFVFNDVI 146

Query: 122 EPKCRSTI--------------KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN 167
            P    +               +               +E      +    +  +K   N
Sbjct: 147 VPSANYSASNVLDSALGRALSAQTGKNVVYSRFGRITPKEPGGNAGEGLTQLFYAKEFKN 206

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             +QG+ ++D       ++  A +   D +R      +G +      +   +   + SY 
Sbjct: 207 GEMQGVTLLDFSREDQQQVLTANTAVWDENRAMWEFRNGRILNIDAANNFTTSANYTSYY 266

Query: 228 LQTE--SANSSTIVLKANDQNLSFLLNPNPNNPNY-RPELLETYRSEFHKRLTQWLFPVI 284
                   +   +   A    ++               +     R    ++       ++
Sbjct: 267 YPFTRAPQDVGMLPSDAAQMTVAQARRAEALLVQAGDQKEARRLRVRIQEKFAFPAICLV 326

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           FGLI      +     +  +     IS+ + FG ++  S+I   +       P    +
Sbjct: 327 FGLIGSSLGVRP--NSRTSRSQGFGISVLLIFG-YYLMSFIFSSLGIKGTLYPFFAAW 381


>gi|146313280|ref|YP_001178354.1| permease YjgP/YjgQ family protein [Enterobacter sp. 638]
 gi|145320156|gb|ABP62303.1| permease YjgP/YjgQ family protein [Enterobacter sp. 638]
          Length = 360

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 116/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   IP  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSIPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++          +          + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLMSTQQGLWAKDGNNFVYIERVKGDDELGGVSIYAFNDNRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D   +   L+  +      P     S     ++           + L  
Sbjct: 187 QSVRYAATAKFDSANRVWRLSQVDESNLQDPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q +   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPMSVAVMMLMALSFIFGPLRSVAM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ ++
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPLIGAL-LPSASFFLISLWLLLRR 359


>gi|307250355|ref|ZP_07532304.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306857630|gb|EFM89737.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 360

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 120/358 (33%), Gaps = 5/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI + I        L    + ++I++++    V   +         S  ++P+ 
Sbjct: 6   MNILERYIGKTIITMVFAVLLMSSGLVFIIKLVEEFKDVGKGSYDALTATYYSLLMLPSD 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ ++G SR  +   V+  AI L +F  +    
Sbjct: 66  IKEFIPVVALIGGLLGLGNLASRSELVVMQSSGFSRFRIGLAVMKTAIPLIVFTMLVSEW 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+      +       +       +  F+  D + +I I        L  + I    D
Sbjct: 126 GIPQT-EQYARNMRSIAQSGGSMLSTKGGFWAKDGNDFIYIRHIENERKLNNVSIYHFED 184

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +  A +     + +   L   +    +  S   +    K +      +    + L
Sbjct: 185 KALKSVTQADNAVF--NGENWTLQRVQTSSLADNSIQQAKEVNKDWQTTITPSKLGIVSL 242

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++S L +          +  + ++  F +++ Q +   +  L++I          
Sbjct: 243 KPESLSISGL-SDYVGFLKETGQDSKRFQIAFWRKVYQPISMAVMMLLAISFVFGPLRSS 301

Query: 301 QRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I I     F V    F  +       P  I  L   L C+S ++ L+ KK+
Sbjct: 302 AMGTKLFIGIIAGFVFYVSNIVFGNMTLVFSWIPVAIGALIPSLICLSIVWWLLTKKR 359


>gi|161505032|ref|YP_001572144.1| hypothetical protein SARI_03163 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866379|gb|ABX23002.1| hypothetical protein SARI_03163 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 360

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 113/354 (31%), Gaps = 2/354 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++                +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVPKDIQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     +   + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYAFNDQRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTDLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  IS    F V       +  +   P  +  L            LM++K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 359


>gi|195940456|ref|ZP_03085838.1| inner membrane protein [Escherichia coli O157:H7 str. EC4024]
 gi|295097698|emb|CBK86788.1| Predicted permeases [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 360

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 117/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +   +          +          + D + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGQNFVYIERVKGDDELGGVSIYAFNNDRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAASAKFDANNKLWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L M+ K+
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWMLLKR 359


>gi|193069794|ref|ZP_03050744.1| putative permease [Escherichia coli E110019]
 gi|192956848|gb|EDV87301.1| putative permease [Escherichia coli E110019]
          Length = 360

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 117/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSAAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 359


>gi|254786689|ref|YP_003074118.1| SecD export membrane protein [Teredinibacter turnerae T7901]
 gi|237687240|gb|ACR14504.1| SecD export membrane protein [Teredinibacter turnerae T7901]
          Length = 354

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 109/357 (30%), Gaps = 3/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI   +  S +   L IV +  +  ++ +++ +     +    L      IP+ 
Sbjct: 1   MRKLQRYIAAQVWGSVMGVLLVIVSLDAIADLVDQLSQLKGD-YTFLEALFYVVLYIPSS 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L  +  ++EL+++   G S   LI  V+   +L  I   +    
Sbjct: 60  VCDYLPLAALVGCLIGLGLLANSSELVVMRAAGVSVRQLIWSVMRPVLLFIIVGALVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P             Q        E  L+FR   +     +               +  
Sbjct: 120 VSPYTDQYADSRRDLLQGHERALQSERGLWFREGSEYMHFNAVLPNGRLYGITRYKFADG 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +  + +S     D    +   GE+ +     K               S +   +++
Sbjct: 180 GRLEQASFIRSAIYQGD--HWVEQGGEITQFDAEDKVDREEFISRNWYTEISPSLLNVLV 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D+     L    N    +      YR  F ++  Q L  +   +I+I          
Sbjct: 238 LDPDELPMQRLYAYANYQEKQNIDSSEYRLAFWQKALQPLATLSLVMIAISFIFGPLRQT 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I + + + F         +  I        +L    FC +  +LL+ + +
Sbjct: 298 TMGFRVFIGVIVGLVFQTSQKLFGPMSIIMGFSPMFAVLIPIAFCFAFGWLLIKRSQ 354


>gi|260551090|ref|ZP_05825294.1| permease YjgP/YjgQ family protein [Acinetobacter sp. RUH2624]
 gi|260405857|gb|EEW99345.1| permease YjgP/YjgQ family protein [Acinetobacter sp. RUH2624]
          Length = 366

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 117/355 (32%), Gaps = 16/355 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +      +IL  I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + ++ + ++  +   +    + 
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWMT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      ++L+    +   F  +    F           S       L+ IF       +
Sbjct: 122 PWGLREFEKLTTTQAVRTGFDLVRPREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAKE 181

Query: 183 THKIYYAQSGSIDLDR------QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                   +               + L  G  +   P     +  +F+SY L+ E+    
Sbjct: 182 GKPDVMILAKEATRVEVANDTANVVDLVQGRRYEIYPGQPKYTQAEFQSYRLRLENDKDV 241

Query: 237 TIVLKAND-QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  +    S LL                 RSE   RL      ++  ++S+  ++ 
Sbjct: 242 KFESSDVEALPTSKLLAKT---------NDPVIRSELGWRLFGPFTIIVALMMSVALSEV 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                +  ++ P     +    +       I K E + +  P   L     ++IF
Sbjct: 293 SPRQGRYYRLIPSIFIFASLIVLMIAIKTRISKGELDIWAYPAALLVYAIAAAIF 347


>gi|67922983|ref|ZP_00516478.1| permease YjgP/YjgQ [Crocosphaera watsonii WH 8501]
 gi|67855202|gb|EAM50466.1| permease YjgP/YjgQ [Crocosphaera watsonii WH 8501]
          Length = 394

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/362 (12%), Positives = 124/362 (34%), Gaps = 20/362 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + Y+   +   FL        +   +  +   +  V+ S   L++ LK+    +P 
Sbjct: 20  LSIMDRYLFIELLLPFLFGMGIFTSLGLSIGSLFDLVRRVTESGLMLSVALKVLLLKLPG 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    +      T ++ ++E++ + + G S   LI PV+    +++   FI  +
Sbjct: 80  FVSLAFPMAMLLAALMAYTRLSSDSEIIALRSLGVSIYRLIIPVILFGFMVTGCAFIVND 139

Query: 120 IIEPKCRSTIKQLSAKAQL------------ALTFSYLEENLFFRLDDDLYIKISKYNPN 167
            I P           +A                 +  ++E           +  ++    
Sbjct: 140 WIAPAATHEAAVTLERAVNQERPDFKERNIVYPEYKTIQEENGQEATVLSRLFYAEEYNG 199

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             +QG+ I+D      ++I  ++S + ++        +G ++  +P     +I++F+   
Sbjct: 200 EQMQGLTILDRTQEGVNQIVTSESATWNISSNTWDFFNGTIYLIAPDGSYRNIVRFQHQQ 259

Query: 228 LQTE--SANSSTIVLKANDQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFPVI 284
           L       + +       +  ++           +   + +   +    ++       +I
Sbjct: 260 LALPRAPLDLANRRQNFTEMTIAETKEYLKAMQLSGNEKRIRKVQVRLQEKYALPFVCLI 319

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           FGL+      +        K     + + + FG ++  +++   +       P L  +L 
Sbjct: 320 FGLVGAAIGVRPQNT---NKSTSFGVCVGLIFG-YYLLAFMSTSLGIWGILTPFLGAWLP 375

Query: 345 CI 346
            I
Sbjct: 376 NI 377


>gi|302879721|ref|YP_003848285.1| permease YjgP/YjgQ family protein [Gallionella capsiferriformans
           ES-2]
 gi|302582510|gb|ADL56521.1| permease YjgP/YjgQ family protein [Gallionella capsiferriformans
           ES-2]
          Length = 358

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 114/360 (31%), Gaps = 6/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+ R I  S  +    ++ +   +  + ++  +     SL  ++      IP  
Sbjct: 1   MNLLTRYLAREIYASIALVFAALIMLFAFLDFIGQLGTMGYGQYSLGYVVLFVLLTIPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + T   L  M   +EL I   +G S   ++  +  +A+ + +  FI   +
Sbjct: 61  IYELFPVAVLIGTIVALVQMAARSELTIYRASGASTGQMLGALSKIAVPMILLSFICGEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      ++L  KA           +  +  DD  ++ +    P+ +L  I I     
Sbjct: 121 IAPPSERLAQKLRLKALNTQVSLQAFRSGVWVKDDASFVNVRSVMPDTSLSDIDIYTFDK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           +           +  L+     L+D      +        M  + +         S +++
Sbjct: 181 SFHMNSVIRAKRASYLEPGVWQLHDVLETSFAARGVSTKSMPVREWQSALTPGILSVMLV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L     ++     +    Y      +L      ++  ++++  A      R
Sbjct: 241 VPEQMSALDLY-KYASHLKENKQQSARYEIAMWNKLVYPFALLVMMVLALPFA--SYQRR 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCISSIFLLMIKKK 357
                  +F+ + +     +    +      N +           +F +   F+L   ++
Sbjct: 298 AGGVSILVFMGIVLGLVFHFAGRLVGSLGSLNDWQPLFSATAMTGVFLLIGAFMLWRVER 357


>gi|303237034|ref|ZP_07323604.1| permease, YjgP/YjgQ family [Prevotella disiens FB035-09AN]
 gi|302482421|gb|EFL45446.1| permease, YjgP/YjgQ family [Prevotella disiens FB035-09AN]
          Length = 408

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 119/360 (33%), Gaps = 10/360 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTVL 61
             + YI++    +++ S + I+ IA V    + ++  +        I+       IP   
Sbjct: 50  LLDWYIIKKFIGTYIFSIVLIISIAIVFDFNENLSKFTQYHAPWRAIIFDNYANFIPYYS 109

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            + +P    +      + +  ++E++ +   G S   L++P +   IL++   +   + +
Sbjct: 110 NLFSPLFVFIAVIFFTSKLAGDSEIISMLAAGISFNRLMRPYMISCILIAGVTYYLNSSV 169

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      +  +A  +     +  E        + +       N      G  +      
Sbjct: 170 IPHGTVIRQNFNALYRNDKKNTTGENIQLKVAKNTVAYIQHYDNTYKRGYGFSLDRFEGK 229

Query: 182 QTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +      A       I   +    + + ++ +   + + I+        +  E  +    
Sbjct: 230 KLVDHLTATEIQYDTIADSKFHWKVTNWKIRKLKGLKEHITTGAEMDTVILMEPTDLIYF 289

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +  +   S LL+      +   + +  Y  EFHKR+       I  +I +      + 
Sbjct: 290 DGQQEEFTSSQLLDYISKQTSRGSKNVIQYEVEFHKRIAMSFSSFILTIIGLSL---SSR 346

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIKK 356
            R+      + I L++S   +     I      N    P+L  ++     ++I     +K
Sbjct: 347 KRKGGMGMYLGIGLALSVS-YILLQAISSTFAINTNASPMLAAWIPNIIFAAIAYFCYRK 405


>gi|325104566|ref|YP_004274220.1| permease YjgP/YjgQ family protein [Pedobacter saltans DSM 12145]
 gi|324973414|gb|ADY52398.1| permease YjgP/YjgQ family protein [Pedobacter saltans DSM 12145]
          Length = 364

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 109/351 (31%), Gaps = 2/351 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  + YI+R    +F+ +      I+ V  I ++++    S  + + ++ +     IP  
Sbjct: 9   KLIDWYIIRKYLGTFVFTMAIFTLISVVFDISEKLDDFLKSRATFSQVVFEYYAGFIPFY 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +        M   TE++ I  +G S    ++P    A ++ IF       
Sbjct: 69  LNFLNPLINFISVIFFTAKMADQTEIVPILTSGASFNRFLRPYFVAATVIFIFNIGFNLF 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+    +             S    +L    +  +Y++ S  N  N+     +     
Sbjct: 129 VIPETNRLMINFENTYTKIKDTSRNNVHLQLDSNTYIYME-SFDNLRNSGYKFSLEKFDK 187

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +   A   S D       + +  +     + + +     K  TL  +  +      
Sbjct: 188 KDLKEKLMADRISWDSVSHKWKIENYTIRYVDGLKEKMENGTVKDTTLDMKPIDFDIRDN 247

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  N   L             ++     E +KR T      +  LI +  + ++    
Sbjct: 248 IYSAMNFWELNEKIEKEKIRGSGVMVNLELEKYKRWTYPFSTYVLTLIGVALSSRKVRGG 307

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               +    +   +        +    K    P    ++   LF    ++L
Sbjct: 308 VGLPLGLGILLSFVYILFIQFANVFALKGGLPPIIAVLIPNMLFGALGVYL 358


>gi|163739705|ref|ZP_02147113.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
 gi|163743162|ref|ZP_02150544.1| permease, YjgP/YjgQ family protein [Phaeobacter gallaeciensis 2.10]
 gi|161383579|gb|EDQ07966.1| permease, YjgP/YjgQ family protein [Phaeobacter gallaeciensis 2.10]
 gi|161386935|gb|EDQ11296.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
          Length = 367

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 116/360 (32%), Gaps = 12/360 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y  R   + F + C  ++ +  +I + ++I    +   SL  L  ++    P  L 
Sbjct: 2   TLDFYYARRFLQWFAVICGVLLTLVMLIDLNEQIRRFEAQDLSLGQLFGLTLLNTPAALS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    + T  +   + R++EL++    G S I  +   + LA L+ +    + N I 
Sbjct: 62  EFLPLIMILTTIVLFIGLARSSELVVTRAIGRSGIRALAAPVLLAALIGVLAVSTLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFS--------YLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
               +  + L+   +     +        +L +              S    + TL  + 
Sbjct: 122 AATSNRYRDLAETYRNGGPAALSLTGEGLWLRQGGAQGQSVIHATGYSGDTDDITLYDVT 181

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           I+                +       +++          ++ + +  +  +  L T   +
Sbjct: 182 ILSYGPEGRPIRQTLAEEAALDGGDWVLIKAKVWPLIVGVNPETNAERHSTLRLSTTLTS 241

Query: 235 SSTIVLKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                       +S + L       +      + Y       L + LF +   L+     
Sbjct: 242 ERIRDTLGTATGISVYDLPATIRELSEAGFSTKRYEVWLQVELARPLFLIAMALVGAAF- 300

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                 R       +  ++ + FG+++  ++    + +N      L  +   +++I L M
Sbjct: 301 -TMRHARFGGTGLAVLTAVLLGFGLYFLRNFAQ-ILGENGQIPVALAGWAPPVAAILLTM 358


>gi|32035302|ref|ZP_00135309.1| COG0795: Predicted permeases [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208576|ref|YP_001053801.1| hypothetical protein APL_1104 [Actinobacillus pleuropneumoniae L20]
 gi|165976526|ref|YP_001652119.1| permease [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|190150429|ref|YP_001968954.1| hypothetical protein APP7_1160 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303250151|ref|ZP_07336353.1| permease [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|303253324|ref|ZP_07339473.1| permease [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307248124|ref|ZP_07530152.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|307252739|ref|ZP_07534630.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307257155|ref|ZP_07538927.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|307261583|ref|ZP_07543251.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|307263772|ref|ZP_07545378.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|126097368|gb|ABN74196.1| hypothetical protein APL_1104 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|165876627|gb|ABY69675.1| predicted permease [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|189915560|gb|ACE61812.1| hypothetical protein APP7_1160 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302648006|gb|EFL78213.1| permease [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|302651214|gb|EFL81368.1| permease [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306855301|gb|EFM87476.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306859771|gb|EFM91793.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306864317|gb|EFM96228.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306868706|gb|EFN00515.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306870893|gb|EFN02631.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 360

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 120/358 (33%), Gaps = 5/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI + I        L    + ++I++++    V   +         S  ++P+ 
Sbjct: 6   MNILERYIGKTIITMIFAVLLMSSGLVFIIKLVEEFKDVGKGSYDALTATYYSLLMLPSD 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ ++G SR  +   V+  AI L +F  +    
Sbjct: 66  IKEFIPVVALIGGLLGLGNLASRSELVVMQSSGFSRFRIGLAVMKTAIPLIVFTMLVSEW 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+      +       +       +  F+  D + +I I        L  + I    D
Sbjct: 126 GIPQT-EQYARNMRSIAQSGGSMLSTKGGFWAKDGNDFIYIRHIENERKLNNVSIYHFED 184

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +  A +     + +   L   +    +  S   +    K +      +    + L
Sbjct: 185 KALKSVTQADNAVF--NGENWTLQRVQTSSLADNSIQQAKEVNKDWQTTITPSKLGIVSL 242

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++S L +          +  + ++  F +++ Q +   +  L++I          
Sbjct: 243 KPESLSISGL-SDYVGFLKETGQDSKRFQIAFWRKVYQPISMAVMMLLAISFVFGPLRSS 301

Query: 301 QRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I I     F V    F  +       P  I  L   L C+S ++ L+ KK+
Sbjct: 302 AMGTKLFIGIIAGFVFYVSNIVFGNMTLVFSWIPVAIGALIPSLICLSIVWWLLTKKR 359


>gi|330827963|ref|YP_004390915.1| putative permease [Aeromonas veronii B565]
 gi|328803099|gb|AEB48298.1| Predicted permease [Aeromonas veronii B565]
          Length = 356

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 115/355 (32%), Gaps = 2/355 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YI R I  S L+  + +V +A +I+ ++++  V      +   L      +P    
Sbjct: 4   ILDRYIGRVIFMSILLCEITLVGLAGLIKYVEQLKSVGDGNYDMINALYYVLLSMPKEAV 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +     L  +  ++EL+++   G S+I+++   L  AI L I + +    + 
Sbjct: 64  LFFPLAALLGGLIGLGQLATSSELVVMQAAGRSKISIVMAALKTAIPLMIMVGLMGEYVA 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     +        L+     +     +  D + ++ I+    +  L GI +      +
Sbjct: 124 PIA-KRMADDIKAGALSEGRLTVSAYGVWARDGNNFVNINGVRNDGALTGITLYRFTPER 182

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                      +      ++          P            ++ +        + +  
Sbjct: 183 KLIDVVQAQEGVFERHHWLLKQTQVTRFDDPAQIRSEQHDKMEWSSELTPKQLGVVSIDP 242

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
            + ++S LL+      +   +    Y+ E  ++L   L  V   L++             
Sbjct: 243 ENLSVSGLLD-YIGYLDANKQDAGRYKLEMWRKLLSPLSVVAMILLASSFIFGPLRSVSM 301

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                + I    +  V       I  +   P  +  +   L      F ++ +K+
Sbjct: 302 GARMLMGIMTGFAVYVSDRVFGPISLVYAVPPILAAIAPSLLFGGISFYILSRKQ 356


>gi|110807998|ref|YP_691518.1| hypothetical protein SFV_4231 [Shigella flexneri 5 str. 8401]
 gi|110617546|gb|ABF06213.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 360

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 117/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEVLGGISIYAFNENRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTDLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVITGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 359


>gi|157147732|ref|YP_001455051.1| hypothetical protein CKO_03536 [Citrobacter koseri ATCC BAA-895]
 gi|157084937|gb|ABV14615.1| hypothetical protein CKO_03536 [Citrobacter koseri ATCC BAA-895]
          Length = 360

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 115/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     +   + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYAFNDQRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   D D +   L+  +      P     S     ++           + L  
Sbjct: 187 QSVRYAASAKFDADNKVWRLSQVDESDLKDPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLMMRK 359


>gi|315617676|gb|EFU98282.1| conserved hypothetical protein [Escherichia coli 3431]
          Length = 360

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 117/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        I P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAMGEWIAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAASAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFVISLWLLMRK 359


>gi|262401791|ref|ZP_06078356.1| predicted permease [Vibrio sp. RC586]
 gi|262351763|gb|EEZ00894.1| predicted permease [Vibrio sp. RC586]
          Length = 366

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 118/357 (33%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAGFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +    QL  +     +   L++  F R  D   +       N  L  +F+       
Sbjct: 122 PWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLHNVFVAQLAPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +               +   RQ I L DG  +   P   D  I  F SY          +
Sbjct: 182 SVLPSVMFSNSGAVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LL                 ++E   RL+     V   L++++     A
Sbjct: 242 TGRDWEALPTLSLL----------KNSDLQAQAELQWRLSL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +  ++ +   +  ++ I    F   S     I ++     I+ L+    + +F  +I
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLTLSATKSAI-EDGSLPVIIGLWPVNAALLFAALI 344


>gi|30065451|ref|NP_839622.1| hypothetical protein S4488 [Shigella flexneri 2a str. 2457T]
 gi|56480550|ref|NP_709939.2| hypothetical protein SF4227 [Shigella flexneri 2a str. 301]
 gi|30043715|gb|AAP19434.1| hypothetical protein S4488 [Shigella flexneri 2a str. 2457T]
 gi|56384101|gb|AAN45646.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|313646463|gb|EFS10925.1| hypothetical protein SF2457T_5378 [Shigella flexneri 2a str. 2457T]
 gi|332748940|gb|EGJ79363.1| hypothetical protein SFK671_4979 [Shigella flexneri K-671]
 gi|332749802|gb|EGJ80215.1| hypothetical protein SF274771_5046 [Shigella flexneri 2747-71]
 gi|332763113|gb|EGJ93356.1| hypothetical protein SF293071_4855 [Shigella flexneri 2930-71]
 gi|333010221|gb|EGK29654.1| hypothetical protein SFVA6_0009 [Shigella flexneri VA-6]
 gi|333011252|gb|EGK30666.1| hypothetical protein SFK272_0205 [Shigella flexneri K-272]
 gi|333011952|gb|EGK31337.1| hypothetical protein SFK304_5275 [Shigella flexneri K-304]
 gi|333012149|gb|EGK31531.1| hypothetical protein SFK227_5242 [Shigella flexneri K-227]
          Length = 360

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 117/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEVLGGISIYAFNENRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTDLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 359


>gi|269121333|ref|YP_003309510.1| permease YjgP/YjgQ family protein [Sebaldella termitidis ATCC
           33386]
 gi|268615211|gb|ACZ09579.1| permease YjgP/YjgQ family protein [Sebaldella termitidis ATCC
           33386]
          Length = 364

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 122/362 (33%), Gaps = 5/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI + +    +       FI  +   +  +  + ++     +++    YL+P V
Sbjct: 1   MKIIDKYIYKALILPSVFGISIFTFILIINVFIDIMEKLFTNDLPFLLVIDYFIYLVPGV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +       + +   E++ I++ GTS   + +P +   ILL++     E  
Sbjct: 61  LTQTIPMGAFLGVMLTYGNFSETNEIIAIESAGTSLFRITRPAIIFGILLTVLGLFMEIE 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFF-RLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P+  + I         +   S  E  +F    D      + + + +      F++  R
Sbjct: 121 VNPRALNNINIEKRNLFSSKPSSLTEAKVFLSNSDAGFGFYVDEVDNSKAEASKFVLFQR 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +        +     +   ++L + E            + +++   L   +      +
Sbjct: 181 TKEGEYPTVFFAEKAKFEAGYMLLKNVEGFNFDKTGDRKVVARYEEQYLPMSTFFKQEDI 240

Query: 240 LKA--NDQNLSFLLNPNPNNPNYRPELLE--TYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            K   ++ NL  L      +        +   Y  ++++R+      V+   + ++ A  
Sbjct: 241 EKKSRSEMNLRELREAYKQSIAEGESYEDSVKYMIKYNERIIGPFASVLLCWLGVLLAVS 300

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                +        I +    G+      ++ K   +P     +  F+  +  + L + K
Sbjct: 301 NKRSGKGISFGISLIVIFAYIGLASYAKIVVQKNHIDPNIAMWMPNFILLVLCLVLSIKK 360

Query: 356 KK 357
            +
Sbjct: 361 SR 362


>gi|123969132|ref|YP_001009990.1| putative permease [Prochlorococcus marinus str. AS9601]
 gi|123199242|gb|ABM70883.1| possible permease [Prochlorococcus marinus str. AS9601]
          Length = 401

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/376 (14%), Positives = 128/376 (34%), Gaps = 25/376 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  I    L +      I+  +  +   I  +      L + LK+  + +P+ L
Sbjct: 25  LIDRWLLGQIIPPMLFAISAFTVISLSVGVMFDLIRKIVEYGLPLFLALKVLFFSLPSFL 84

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      ++ N+ELL + + G     +I P + L+I ++   F   + +
Sbjct: 85  VLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIISPAIALSIFMTGLTFYFNDNL 144

Query: 122 EPKCRS-----------------TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY 164
            PK                      K+    ++     +   +          +I  S++
Sbjct: 145 VPKSNKLAETTLRAGIGSSFSEEKGKENIMFSRYGSRINSETKKPTKNNSKLTHIFYSQW 204

Query: 165 NPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS-IMKF 223
             N  ++ + ++D       +I  A SG  D    + I ++G +       +  +   K 
Sbjct: 205 YENKIMKNVTVLDFSREDFQQILKANSGRFDKKSSSWIFSNGSIVSIDSGGQTTNIQFKE 264

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLFP 282
             Y         + +   AN+  L   +            + +   +    ++ T     
Sbjct: 265 YKYPFVEGPMELAKVPKDANEMTLKQAIQAEKIYKKTGNLKEVRRMKVRIQEKFTLPFAC 324

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           ++FGLI            +  K     +S+ +   +++  S+I           PI   +
Sbjct: 325 LVFGLIGSSLG--SKSNLRSSKSQGFGLSVIL-ILIYYVMSFIFSSFGVKGILPPIFAAW 381

Query: 343 LFCISSI--FLLMIKK 356
           L  + S+   + +++K
Sbjct: 382 LPVLISLGGGIYLLRK 397


>gi|323965651|gb|EGB61105.1| inner membrane protein yjgQ [Escherichia coli M863]
 gi|327250208|gb|EGE61927.1| hypothetical protein ECSTEC7V_5012 [Escherichia coli STEC_7v]
          Length = 360

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 117/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 ESVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 359


>gi|332749215|gb|EGJ79636.1| hypothetical protein SF434370_4578 [Shigella flexneri 4343-70]
 gi|333009229|gb|EGK28685.1| hypothetical protein SFK218_0005 [Shigella flexneri K-218]
          Length = 360

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 118/355 (33%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +   +    + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMVIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEVLGGISIYAFNENRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTDLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 359


>gi|309784105|ref|ZP_07678747.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|308928098|gb|EFP73563.1| conserved hypothetical protein [Shigella dysenteriae 1617]
          Length = 360

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 116/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +          P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWAAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 359


>gi|116070679|ref|ZP_01467948.1| possible permease [Synechococcus sp. BL107]
 gi|116066084|gb|EAU71841.1| possible permease [Synechococcus sp. BL107]
          Length = 384

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/375 (12%), Positives = 126/375 (33%), Gaps = 21/375 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + ++L  I    L +      +   I ++  +         + + L++    IP+ L 
Sbjct: 14  LLDQWLLAEIAAPLLFAIASFTVLGLSIGVMFELARRLVDGLPILVALQLLLLNIPSFLV 73

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P      T    + ++ N+EL  + + G S   L+ P L L+I L+   F+  ++I 
Sbjct: 74  LSLPMATLFATLLAYSKLSSNSELTALRSLGVSTTRLVVPALALSIFLTGLTFVFNDVIV 133

Query: 123 PKCRST-------------IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT 169
           P+  +                +              +            +  ++      
Sbjct: 134 PRANTQAEITLQKGLGRALATEKGKDITFNSFGKIYDPKTETSSRGLRQLFYARRFEQGE 193

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           +  + ++D       +++ A+    +  +      +G+V   +P +   + + F      
Sbjct: 194 MLDVTLLDFSRADYRQMWIAERAVYNEAKAMWEFFNGQVLTLNP-NGSTTRLAFDENFYP 252

Query: 230 TESANSS--TIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLFPVIFG 286
             S       +   AND  LS  ++      +    +     R    ++ +  +  ++FG
Sbjct: 253 LSSGPLQVAKLPDDANDMTLSQAISAEKIESDAGNIKAARKLRVRIQEKFSFPMACIVFG 312

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
           LI      +     +  +     +S+ +  G ++  S     +  +    P    +L  +
Sbjct: 313 LIGSSLGARPGS--RTSRSQGFGVSILLILG-YYALSVSFSSLGVSGILPPFFAAWLPVL 369

Query: 347 SSIFL-LMIKKKYTK 360
            S+    ++ ++ ++
Sbjct: 370 ISLGAGGLLLRQASR 384


>gi|38704251|ref|NP_313266.2| hypothetical protein ECs5239 [Escherichia coli O157:H7 str. Sakai]
 gi|89110978|ref|AP_004758.1| conserved inner membrane protein [Escherichia coli str. K-12
           substr. W3110]
 gi|90111715|ref|NP_418683.4| lipopolysaccharide export ABC permease of the LptBFGC export
           complex [Escherichia coli str. K-12 substr. MG1655]
 gi|110644621|ref|YP_672351.1| putative membrane protein YjgQ [Escherichia coli 536]
 gi|157155171|ref|YP_001465771.1| putative permease [Escherichia coli E24377A]
 gi|157163737|ref|YP_001461055.1| putative permease [Escherichia coli HS]
 gi|168749566|ref|ZP_02774588.1| putative permease [Escherichia coli O157:H7 str. EC4113]
 gi|168754844|ref|ZP_02779851.1| putative permease [Escherichia coli O157:H7 str. EC4401]
 gi|168760517|ref|ZP_02785524.1| putative permease [Escherichia coli O157:H7 str. EC4501]
 gi|168766553|ref|ZP_02791560.1| putative permease [Escherichia coli O157:H7 str. EC4486]
 gi|168774016|ref|ZP_02799023.1| putative permease [Escherichia coli O157:H7 str. EC4196]
 gi|168782789|ref|ZP_02807796.1| putative permease [Escherichia coli O157:H7 str. EC4076]
 gi|168784912|ref|ZP_02809919.1| putative permease [Escherichia coli O157:H7 str. EC869]
 gi|168797842|ref|ZP_02822849.1| putative permease [Escherichia coli O157:H7 str. EC508]
 gi|170021730|ref|YP_001726684.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|170083701|ref|YP_001733021.1| inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
 gi|170681768|ref|YP_001746666.1| putative permease [Escherichia coli SMS-3-5]
 gi|188493811|ref|ZP_03001081.1| putative permease [Escherichia coli 53638]
 gi|191168708|ref|ZP_03030487.1| putative permease [Escherichia coli B7A]
 gi|193063693|ref|ZP_03044781.1| putative permease [Escherichia coli E22]
 gi|194426570|ref|ZP_03059124.1| putative permease [Escherichia coli B171]
 gi|194437817|ref|ZP_03069912.1| putative permease [Escherichia coli 101-1]
 gi|195937288|ref|ZP_03082670.1| inner membrane protein [Escherichia coli O157:H7 str. EC4024]
 gi|208808552|ref|ZP_03250889.1| putative permease [Escherichia coli O157:H7 str. EC4206]
 gi|208812170|ref|ZP_03253499.1| putative permease [Escherichia coli O157:H7 str. EC4045]
 gi|208821551|ref|ZP_03261871.1| putative permease [Escherichia coli O157:H7 str. EC4042]
 gi|209396919|ref|YP_002273807.1| putative permease [Escherichia coli O157:H7 str. EC4115]
 gi|217326107|ref|ZP_03442191.1| putative permease [Escherichia coli O157:H7 str. TW14588]
 gi|218556809|ref|YP_002389723.1| hypothetical protein ECIAI1_4493 [Escherichia coli IAI1]
 gi|218561420|ref|YP_002394333.1| hypothetical protein ECS88_4849 [Escherichia coli S88]
 gi|218692649|ref|YP_002400861.1| hypothetical protein ECED1_5115 [Escherichia coli ED1a]
 gi|218698010|ref|YP_002405677.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
 gi|218702965|ref|YP_002410594.1| hypothetical protein ECIAI39_4735 [Escherichia coli IAI39]
 gi|218707868|ref|YP_002415387.1| hypothetical protein ECUMN_4794 [Escherichia coli UMN026]
 gi|227886684|ref|ZP_04004489.1| inner membrane protein [Escherichia coli 83972]
 gi|238903363|ref|YP_002929159.1| conserved inner membrane protein [Escherichia coli BW2952]
 gi|253775115|ref|YP_003037946.1| permease YjgP/YjgQ family protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254164187|ref|YP_003047297.1| inner membrane protein [Escherichia coli B str. REL606]
 gi|254796282|ref|YP_003081119.1| inner membrane protein [Escherichia coli O157:H7 str. TW14359]
 gi|256019914|ref|ZP_05433779.1| conserved inner membrane protein [Shigella sp. D9]
 gi|256025198|ref|ZP_05439063.1| conserved inner membrane protein [Escherichia sp. 4_1_40B]
 gi|260847093|ref|YP_003224871.1| inner membrane protein [Escherichia coli O103:H2 str. 12009]
 gi|260858414|ref|YP_003232305.1| inner membrane protein [Escherichia coli O26:H11 str. 11368]
 gi|260871014|ref|YP_003237416.1| inner membrane protein [Escherichia coli O111:H- str. 11128]
 gi|261225381|ref|ZP_05939662.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255366|ref|ZP_05947899.1| inner membrane protein [Escherichia coli O157:H7 str. FRIK966]
 gi|293402887|ref|ZP_06646984.1| membrane protein [Escherichia coli FVEC1412]
 gi|293407982|ref|ZP_06651822.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293417762|ref|ZP_06660384.1| lipopolysaccharide export system permease lptG [Escherichia coli
           B185]
 gi|293476565|ref|ZP_06664973.1| lipopolysaccharide export system permease lptG [Escherichia coli
           B088]
 gi|298378413|ref|ZP_06988297.1| lipopolysaccharide export system permease lptG [Escherichia coli
           FVEC1302]
 gi|300818513|ref|ZP_07098722.1| putative inner membrane protein [Escherichia coli MS 107-1]
 gi|300821369|ref|ZP_07101517.1| putative inner membrane protein [Escherichia coli MS 119-7]
 gi|300899412|ref|ZP_07117667.1| putative inner membrane protein [Escherichia coli MS 198-1]
 gi|300906110|ref|ZP_07123829.1| putative inner membrane protein [Escherichia coli MS 84-1]
 gi|300916358|ref|ZP_07133100.1| putative inner membrane protein [Escherichia coli MS 115-1]
 gi|300923940|ref|ZP_07139950.1| putative inner membrane protein [Escherichia coli MS 182-1]
 gi|300928088|ref|ZP_07143636.1| putative inner membrane protein [Escherichia coli MS 187-1]
 gi|300950208|ref|ZP_07164149.1| putative inner membrane protein [Escherichia coli MS 116-1]
 gi|300957115|ref|ZP_07169356.1| putative inner membrane protein [Escherichia coli MS 175-1]
 gi|300972387|ref|ZP_07171920.1| putative inner membrane protein [Escherichia coli MS 45-1]
 gi|300988160|ref|ZP_07178580.1| putative inner membrane protein [Escherichia coli MS 200-1]
 gi|301024382|ref|ZP_07188070.1| putative inner membrane protein [Escherichia coli MS 69-1]
 gi|301050052|ref|ZP_07196964.1| putative inner membrane protein [Escherichia coli MS 185-1]
 gi|301304685|ref|ZP_07210793.1| putative inner membrane protein [Escherichia coli MS 124-1]
 gi|301325193|ref|ZP_07218717.1| putative inner membrane protein [Escherichia coli MS 78-1]
 gi|301643390|ref|ZP_07243440.1| putative inner membrane protein [Escherichia coli MS 146-1]
 gi|306815520|ref|ZP_07449669.1| Inner membrane protein yjgQ [Escherichia coli NC101]
 gi|307140957|ref|ZP_07500313.1| Inner membrane protein yjgQ [Escherichia coli H736]
 gi|307312963|ref|ZP_07592591.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|309792903|ref|ZP_07687331.1| putative inner membrane protein [Escherichia coli MS 145-7]
 gi|312965943|ref|ZP_07780169.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|312973920|ref|ZP_07788091.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|331645011|ref|ZP_08346128.1| inner membrane protein YjgQ [Escherichia coli H736]
 gi|331650395|ref|ZP_08351467.1| inner membrane protein YjgQ [Escherichia coli M605]
 gi|331656096|ref|ZP_08357084.1| inner membrane protein YjgQ [Escherichia coli M718]
 gi|331660843|ref|ZP_08361775.1| inner membrane protein YjgQ [Escherichia coli TA206]
 gi|331665931|ref|ZP_08366825.1| inner membrane protein YjgQ [Escherichia coli TA143]
 gi|331671170|ref|ZP_08372003.1| inner membrane protein YjgQ [Escherichia coli TA271]
 gi|331671403|ref|ZP_08372201.1| inner membrane protein YjgQ [Escherichia coli TA280]
 gi|331680400|ref|ZP_08381059.1| inner membrane protein YjgQ [Escherichia coli H591]
 gi|331681282|ref|ZP_08381919.1| inner membrane protein YjgQ [Escherichia coli H299]
 gi|83288182|sp|P0ADC7|LPTG_ECOL6 RecName: Full=Lipopolysaccharide export system permease protein
           lptG
 gi|83288183|sp|P0ADC6|LPTG_ECOLI RecName: Full=Lipopolysaccharide export system permease protein
           lptG
 gi|31323181|gb|AAP43525.1| YjgQ [Escherichia coli B]
 gi|85677009|dbj|BAE78259.1| conserved inner membrane protein [Escherichia coli str. K12 substr.
           W3110]
 gi|87082400|gb|AAC77219.2| lipopolysaccharide export ABC permease of the LptBFGC export
           complex [Escherichia coli str. K-12 substr. MG1655]
 gi|110346213|gb|ABG72450.1| putative membrane protein YjgQ [Escherichia coli 536]
 gi|157069417|gb|ABV08672.1| putative permease [Escherichia coli HS]
 gi|157077201|gb|ABV16909.1| putative permease [Escherichia coli E24377A]
 gi|169756658|gb|ACA79357.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|169891536|gb|ACB05243.1| conserved inner membrane protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|170519486|gb|ACB17664.1| putative permease [Escherichia coli SMS-3-5]
 gi|187770216|gb|EDU34060.1| putative permease [Escherichia coli O157:H7 str. EC4196]
 gi|188016197|gb|EDU54319.1| putative permease [Escherichia coli O157:H7 str. EC4113]
 gi|188489010|gb|EDU64113.1| putative permease [Escherichia coli 53638]
 gi|188999755|gb|EDU68741.1| putative permease [Escherichia coli O157:H7 str. EC4076]
 gi|189357825|gb|EDU76244.1| putative permease [Escherichia coli O157:H7 str. EC4401]
 gi|189364202|gb|EDU82621.1| putative permease [Escherichia coli O157:H7 str. EC4486]
 gi|189368974|gb|EDU87390.1| putative permease [Escherichia coli O157:H7 str. EC4501]
 gi|189375169|gb|EDU93585.1| putative permease [Escherichia coli O157:H7 str. EC869]
 gi|189379540|gb|EDU97956.1| putative permease [Escherichia coli O157:H7 str. EC508]
 gi|190901256|gb|EDV61026.1| putative permease [Escherichia coli B7A]
 gi|192930680|gb|EDV83286.1| putative permease [Escherichia coli E22]
 gi|194415309|gb|EDX31577.1| putative permease [Escherichia coli B171]
 gi|194423313|gb|EDX39305.1| putative permease [Escherichia coli 101-1]
 gi|208728353|gb|EDZ77954.1| putative permease [Escherichia coli O157:H7 str. EC4206]
 gi|208733447|gb|EDZ82134.1| putative permease [Escherichia coli O157:H7 str. EC4045]
 gi|208741674|gb|EDZ89356.1| putative permease [Escherichia coli O157:H7 str. EC4042]
 gi|209158319|gb|ACI35752.1| putative permease [Escherichia coli O157:H7 str. EC4115]
 gi|217322328|gb|EEC30752.1| putative permease [Escherichia coli O157:H7 str. TW14588]
 gi|218354742|emb|CAV01806.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
 gi|218363578|emb|CAR01235.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI1]
 gi|218368189|emb|CAR05997.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli S88]
 gi|218372951|emb|CAR20832.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI39]
 gi|218430213|emb|CAR11214.2| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli ED1a]
 gi|218434965|emb|CAR15906.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli UMN026]
 gi|222036034|emb|CAP78779.1| Inner membrane protein yjgQ [Escherichia coli LF82]
 gi|227836257|gb|EEJ46723.1| inner membrane protein [Escherichia coli 83972]
 gi|238860250|gb|ACR62248.1| conserved inner membrane protein [Escherichia coli BW2952]
 gi|242379782|emb|CAQ34609.1| LptG, subunit of LptABCFG ABC transporter [Escherichia coli
           BL21(DE3)]
 gi|253326159|gb|ACT30761.1| permease YjgP/YjgQ family protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976090|gb|ACT41761.1| conserved inner membrane protein [Escherichia coli B str. REL606]
 gi|253980246|gb|ACT45916.1| conserved inner membrane protein [Escherichia coli BL21(DE3)]
 gi|254595682|gb|ACT75043.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|257757063|dbj|BAI28565.1| inner membrane protein [Escherichia coli O26:H11 str. 11368]
 gi|257762240|dbj|BAI33737.1| inner membrane protein [Escherichia coli O103:H2 str. 12009]
 gi|257767370|dbj|BAI38865.1| inner membrane protein [Escherichia coli O111:H- str. 11128]
 gi|260450918|gb|ACX41340.1| permease YjgP/YjgQ family protein [Escherichia coli DH1]
 gi|281181360|dbj|BAI57690.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|284924432|emb|CBG37557.1| putative permease [Escherichia coli 042]
 gi|291321018|gb|EFE60460.1| lipopolysaccharide export system permease lptG [Escherichia coli
           B088]
 gi|291429802|gb|EFF02816.1| membrane protein [Escherichia coli FVEC1412]
 gi|291430480|gb|EFF03478.1| lipopolysaccharide export system permease lptG [Escherichia coli
           B185]
 gi|291472233|gb|EFF14715.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298280747|gb|EFI22248.1| lipopolysaccharide export system permease lptG [Escherichia coli
           FVEC1302]
 gi|300298210|gb|EFJ54595.1| putative inner membrane protein [Escherichia coli MS 185-1]
 gi|300305970|gb|EFJ60490.1| putative inner membrane protein [Escherichia coli MS 200-1]
 gi|300316133|gb|EFJ65917.1| putative inner membrane protein [Escherichia coli MS 175-1]
 gi|300356990|gb|EFJ72860.1| putative inner membrane protein [Escherichia coli MS 198-1]
 gi|300396608|gb|EFJ80146.1| putative inner membrane protein [Escherichia coli MS 69-1]
 gi|300402053|gb|EFJ85591.1| putative inner membrane protein [Escherichia coli MS 84-1]
 gi|300410966|gb|EFJ94504.1| putative inner membrane protein [Escherichia coli MS 45-1]
 gi|300416318|gb|EFJ99628.1| putative inner membrane protein [Escherichia coli MS 115-1]
 gi|300419818|gb|EFK03129.1| putative inner membrane protein [Escherichia coli MS 182-1]
 gi|300450448|gb|EFK14068.1| putative inner membrane protein [Escherichia coli MS 116-1]
 gi|300463885|gb|EFK27378.1| putative inner membrane protein [Escherichia coli MS 187-1]
 gi|300526258|gb|EFK47327.1| putative inner membrane protein [Escherichia coli MS 119-7]
 gi|300528917|gb|EFK49979.1| putative inner membrane protein [Escherichia coli MS 107-1]
 gi|300840035|gb|EFK67795.1| putative inner membrane protein [Escherichia coli MS 124-1]
 gi|300847954|gb|EFK75714.1| putative inner membrane protein [Escherichia coli MS 78-1]
 gi|301078220|gb|EFK93026.1| putative inner membrane protein [Escherichia coli MS 146-1]
 gi|305851182|gb|EFM51637.1| Inner membrane protein yjgQ [Escherichia coli NC101]
 gi|306907131|gb|EFN37638.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|307556432|gb|ADN49207.1| putative membrane protein YjgQ [Escherichia coli ABU 83972]
 gi|308123189|gb|EFO60451.1| putative inner membrane protein [Escherichia coli MS 145-7]
 gi|309704766|emb|CBJ04117.1| putative permease [Escherichia coli ETEC H10407]
 gi|310331454|gb|EFP98710.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|312289186|gb|EFR17080.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|312948915|gb|ADR29742.1| inner membrane protein [Escherichia coli O83:H1 str. NRG 857C]
 gi|315063569|gb|ADT77896.1| conserved inner membrane protein [Escherichia coli W]
 gi|315138813|dbj|BAJ45972.1| inner membrane protein yjgQ [Escherichia coli DH1]
 gi|315255621|gb|EFU35589.1| putative inner membrane protein [Escherichia coli MS 85-1]
 gi|315293627|gb|EFU52979.1| putative inner membrane protein [Escherichia coli MS 153-1]
 gi|315298979|gb|EFU58233.1| putative inner membrane protein [Escherichia coli MS 16-3]
 gi|320639019|gb|EFX08665.1| lipopolysaccharide ABC transporter permease [Escherichia coli
           O157:H7 str. G5101]
 gi|320644389|gb|EFX13454.1| lipopolysaccharide ABC transporter permease [Escherichia coli
           O157:H- str. 493-89]
 gi|320649706|gb|EFX18230.1| lipopolysaccharide ABC transporter permease [Escherichia coli
           O157:H- str. H 2687]
 gi|320655103|gb|EFX23064.1| lipopolysaccharide ABC transporter permease [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660609|gb|EFX28070.1| lipopolysaccharide ABC transporter permease [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665536|gb|EFX32582.1| lipopolysaccharide ABC transporter permease [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323157529|gb|EFZ43638.1| hypothetical protein ECEPECA14_0586 [Escherichia coli EPECa14]
 gi|323162061|gb|EFZ47933.1| hypothetical protein ECE128010_1826 [Escherichia coli E128010]
 gi|323171708|gb|EFZ57354.1| hypothetical protein ECLT68_3917 [Escherichia coli LT-68]
 gi|323176177|gb|EFZ61769.1| hypothetical protein ECOK1180_4867 [Escherichia coli 1180]
 gi|323181996|gb|EFZ67407.1| hypothetical protein ECOK1357_4674 [Escherichia coli 1357]
 gi|323189856|gb|EFZ75134.1| hypothetical protein ECRN5871_1643 [Escherichia coli RN587/1]
 gi|323380351|gb|ADX52619.1| permease YjgP/YjgQ family protein [Escherichia coli KO11]
 gi|323935384|gb|EGB31732.1| inner membrane protein yjgQ [Escherichia coli E1520]
 gi|323940180|gb|EGB36374.1| inner membrane protein yjgQ [Escherichia coli E482]
 gi|323945995|gb|EGB42033.1| inner membrane protein yjgQ [Escherichia coli H120]
 gi|323960303|gb|EGB55944.1| inner membrane protein yjgQ [Escherichia coli H489]
 gi|323970484|gb|EGB65743.1| inner membrane protein yjgQ [Escherichia coli TA007]
 gi|323975395|gb|EGB70496.1| inner membrane protein yjgQ [Escherichia coli TW10509]
 gi|324005135|gb|EGB74354.1| putative inner membrane protein [Escherichia coli MS 57-2]
 gi|324013726|gb|EGB82945.1| putative inner membrane protein [Escherichia coli MS 60-1]
 gi|324019239|gb|EGB88458.1| putative inner membrane protein [Escherichia coli MS 117-3]
 gi|324118823|gb|EGC12715.1| inner membrane protein yjgQ [Escherichia coli E1167]
 gi|331035986|gb|EGI08224.1| inner membrane protein YjgQ [Escherichia coli H736]
 gi|331040789|gb|EGI12947.1| inner membrane protein YjgQ [Escherichia coli M605]
 gi|331046450|gb|EGI18540.1| inner membrane protein YjgQ [Escherichia coli M718]
 gi|331051885|gb|EGI23924.1| inner membrane protein YjgQ [Escherichia coli TA206]
 gi|331056982|gb|EGI28976.1| inner membrane protein YjgQ [Escherichia coli TA143]
 gi|331061759|gb|EGI33685.1| inner membrane protein YjgQ [Escherichia coli TA271]
 gi|331071248|gb|EGI42605.1| inner membrane protein YjgQ [Escherichia coli TA280]
 gi|331071863|gb|EGI43199.1| inner membrane protein YjgQ [Escherichia coli H591]
 gi|331081503|gb|EGI52664.1| inner membrane protein YjgQ [Escherichia coli H299]
 gi|332083263|gb|EGI88494.1| hypothetical protein SB521682_5142 [Shigella boydii 5216-82]
 gi|332083781|gb|EGI88999.1| hypothetical protein SD15574_5323 [Shigella dysenteriae 155-74]
 gi|332346341|gb|AEE59675.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 360

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 117/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 359


>gi|313159015|gb|EFR58390.1| permease, YjgP/YjgQ family [Alistipes sp. HGB5]
          Length = 367

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/363 (12%), Positives = 114/363 (31%), Gaps = 8/363 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  + YIL     ++  +   I+ +  +   +++I+  +     L +++       IP  
Sbjct: 9   KILDRYILGKFLATYFFAIAMIIIVVVLFDYVEKIDDFTELHAPLRDVIFDYYLNFIPFF 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +   +     +      + M   TE++ + + G S   L+ P    A+++          
Sbjct: 69  INQFSGLFTFIACIFFTSKMAYQTEIVAMLSGGMSFRRLMWPYFLGALIIGSLSLTLNLW 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P  +  I    ++       +    +++ +++   +  I  YN  +       +    
Sbjct: 129 LIPISQRHIVNFESQYIKRKQNNKFNRHIYRQIEPGTFAYIRGYNDASQQASFLALEHYY 188

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS-KDISIMKFKSYTLQTESANSSTI 238
                +   A     + + +              +  +     +     +  E      I
Sbjct: 189 SGTMTRSLEASDVKFNPETKCWTAPRYTKREFDSLGVEKFEQFRNLDTLINLEVTELGEI 248

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                  N++ L            + +     E H R    L   I  LI +      + 
Sbjct: 249 NDLIQTMNITELNEFLDQQRAKGSDAINIIEVEKHARFAYPLSTFILTLIGVSL---SSR 305

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL-LMIKKK 357
             +      I I   + F  +  F+    +  ++    P L ++L  I  +F+ + + +K
Sbjct: 306 KVRGGTGLHIGIGTGLCFS-YILFNRFFEEFAKSGTLPPGLAVWLPNIIYLFIAVYLYRK 364

Query: 358 YTK 360
             K
Sbjct: 365 APK 367


>gi|300935934|ref|ZP_07150887.1| putative inner membrane protein [Escherichia coli MS 21-1]
 gi|300458870|gb|EFK22363.1| putative inner membrane protein [Escherichia coli MS 21-1]
          Length = 360

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 120/355 (33%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  IS    F V    F  +      +P    +L    F + S++LLM K 
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGISPIIGALLPSASFFLISLWLLMRKS 360


>gi|34540317|ref|NP_904796.1| hypothetical protein PG0501 [Porphyromonas gingivalis W83]
 gi|34396629|gb|AAQ65695.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
          Length = 360

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/362 (11%), Positives = 115/362 (31%), Gaps = 7/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +   + Y+++    +F+ S + I+ ++ V  I ++I+       SL +I+       +P 
Sbjct: 4   LNRLDKYLIKQFLGTFVFSIILIISVSVVFDINEKIDDFMKPEVSLRSIIFDYYFNFVPY 63

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +   +E++ + + G S   L+ P +  A +++I  F+  +
Sbjct: 64  YANLFSPLFVFISVIFFTSKLAEKSEIIAMLSAGVSFKRLMVPYMLSATVIAILTFLLNS 123

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P      +       +        E++   +   ++     Y+        F ++  
Sbjct: 124 FVIPPGN-ATRIDFQNKYIKNKKVQYAESVQLEVKKGVFAFFGSYSDAMRTGYQFSLEEF 182

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +                    + +  +       + +         +    A+     
Sbjct: 183 KGKQLVSRLTADRIQYDSLYNWRIFNYRIRHFGKYKETVESGSEMDTVIAVRPADFLVAE 242

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                   + L     +        ++ +  E HKR        I  +I        +  
Sbjct: 243 DDVETMTTTDLHTYISHQKQRGVGNVKLFEIELHKRYAAIFSAFILTIIGASL---SSRK 299

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKKY 358
            +      I I L +SF  +  F  +      +    P +  +L   + ++  + + KK 
Sbjct: 300 VKGGMGINIAIGLGLSFA-YILFMTVAGTFAISGSLPPFMAAWLPNFVFTVIAVSLYKKA 358

Query: 359 TK 360
            +
Sbjct: 359 PR 360


>gi|147673657|ref|YP_001217998.1| hypothetical protein VC0395_A2082 [Vibrio cholerae O395]
 gi|262167531|ref|ZP_06035236.1| predicted permease [Vibrio cholerae RC27]
 gi|146315540|gb|ABQ20079.1| putative membrane protein [Vibrio cholerae O395]
 gi|227014390|gb|ACP10600.1| putative membrane protein [Vibrio cholerae O395]
 gi|262023984|gb|EEY42680.1| predicted permease [Vibrio cholerae RC27]
          Length = 366

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 115/347 (33%), Gaps = 19/347 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +  VS      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADVSDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +     L  +     +   L++  F R  D   +       N  L  +F+       
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +        +      +   RQ I L DG  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LLN                ++E   R++     V   L++++     A
Sbjct: 242 AERDWEALPTLSLLN----------NADRRAQAELQWRISL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           +  ++ +   +  ++ I    F   S     I ++     I+ L+  
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALSATKSAI-EDGSLPVIIGLWPI 334


>gi|307246020|ref|ZP_07528102.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307255001|ref|ZP_07536819.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307259437|ref|ZP_07541162.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306852955|gb|EFM85178.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306861874|gb|EFM93850.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866373|gb|EFM98236.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 360

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 120/358 (33%), Gaps = 5/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI + I        L    + ++I++++    V   +         S  ++P+ 
Sbjct: 6   MNILERYIGKTIIAMIFAVLLMSSGLVFIIKLVEEFKDVGKGSYDALTATYYSLLMLPSD 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ ++G SR  +   V+  AI L +F  +    
Sbjct: 66  IKEFIPVVALIGGLLGLGNLASRSELVVMQSSGFSRFRIGLAVMKTAIPLIVFTMLVSEW 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+      +       +       +  F+  D + +I I        L  + I    D
Sbjct: 126 GIPQT-EQYARNMRSIAQSGGSMLSTKGGFWAKDGNDFIYIRHIENERKLNNVSIYHFED 184

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +  A +     + +   L   +    +  S   +    K +      +    + L
Sbjct: 185 KALKSVTQADNAVF--NGENWTLQRVQTSSLADNSIQQAKEVNKDWQTTITPSKLGIVSL 242

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++S L +          +  + ++  F +++ Q +   +  L++I          
Sbjct: 243 KPESLSISGL-SDYVGFLKETGQDSKRFQIAFWRKVYQPISMAVMMLLAISFVFGPLRSS 301

Query: 301 QRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I I     F V    F  +       P  I  L   L C+S ++ L+ KK+
Sbjct: 302 AMGTKLFIGIIAGFVFYVSNIVFGNMTLVFSWIPVAIGALIPSLICLSIVWWLLTKKR 359


>gi|242240954|ref|YP_002989135.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech703]
 gi|242133011|gb|ACS87313.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech703]
          Length = 356

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/356 (12%), Positives = 120/356 (33%), Gaps = 2/356 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YI + I  + +M+   +V ++ +I+ + ++  V   + S+      +   +P  +
Sbjct: 3   RVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQGSYSVLGAGLYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGNLATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIGEWL 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P     + +      +        ++  +  D + ++ I +    N L G+ I    + 
Sbjct: 123 APPG-EQMARNYRSQMMYGGSMLSTQSGLWAKDGNDFVYIQRVQGENELVGVNIYHFDNQ 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                    + ++  +    +    E   +S      S      +           + L 
Sbjct: 182 SKLLSVRYAASAVYENGVWQLSQVEESDLRSNKQISGSQTISGEWKTGLTPDKLGVVALD 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            +  ++  L +   N      +    Y+     +L   L   +  L+++           
Sbjct: 242 PDALSIRGLYD-YINYLKQSDQEASRYQLNMWSKLFAPLSVAVMMLMALSFIFGPLRSVP 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I IS    F V       +  + + P  +  L      +    +L++K++
Sbjct: 301 AGVRIVIGISFGFLFYVLDQIFGPLSLVYRIPPVLGALLPSALFLFISIMLLLKRR 356


>gi|189465688|ref|ZP_03014473.1| hypothetical protein BACINT_02049 [Bacteroides intestinalis DSM
           17393]
 gi|189433952|gb|EDV02937.1| hypothetical protein BACINT_02049 [Bacteroides intestinalis DSM
           17393]
          Length = 378

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 124/363 (34%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S       I+       +P 
Sbjct: 20  LKRLDFYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKFMSHEAPWKAIVFDYYLNFVPY 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F   +
Sbjct: 80  FANLFSPLFVFISVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVVTFCLGS 139

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + PK   T      K       +             +       + + T     +   +
Sbjct: 140 YVIPKGSVTRINFEDKYYKQRKSNTARNIQLEVDSGVIAYIERFEDYSKTGYRFSLDKFK 199

Query: 180 DTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           D Q      A+S + D        + D  +     + ++I         L  E A+   +
Sbjct: 200 DKQLVSHLTARSITYDTASVHKWTIKDYMIREMDGMKENIVKGDRIDSILFMEPADFLIM 259

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        L              ++ +  E+HKR+       I  LI +      + 
Sbjct: 260 KNQQEMMTSPELSEYISRQRQRGFANIKEFELEYHKRIAMSFASFILTLIGVSL---SSK 316

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKK 357
             +      + I L++SF  +  F  I      N    P++ +++   + +     + +K
Sbjct: 317 KTKGGMGLHLGIGLALSFS-YILFQTIASTFAVNGNVPPVVAVWIPNILYAFIAFYLYQK 375

Query: 358 YTK 360
             K
Sbjct: 376 APK 378


>gi|255320991|ref|ZP_05362164.1| permease YjgP/YjgQ family protein [Acinetobacter radioresistens
           SK82]
 gi|262379919|ref|ZP_06073074.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255301955|gb|EET81199.1| permease YjgP/YjgQ family protein [Acinetobacter radioresistens
           SK82]
 gi|262298113|gb|EEY86027.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 366

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 121/361 (33%), Gaps = 17/361 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +      +ILL I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDASILLSIIGYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + ++ L ++  +   I    + 
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGISRNRLARLLIPLTLVYMLVQSILMLWMS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +QL+    +   F  +    F           S    +  L+ IF     +  
Sbjct: 122 PWGIRQFEQLTTSQAVRTGFDLVRPKEFISSGPYTIYAGSLSEDHKNLKEIFFYQRAEKP 181

Query: 183 THKIYYAQSGSIDLDRQAI------ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                   +                 L  G  +   P     S  +F+SY L+ E+  ++
Sbjct: 182 GKPDVMILAKEATRVEMMDDSANVVDLVQGRRYEIYPGQPRYSQAEFESYRLRLENDKTA 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                      +  L     +P           SE   R+      ++  ++++      
Sbjct: 242 NFESDDVAALTTSKLWEQRADPV--------VESELGWRIFVPFAIMVALILAMAL---S 290

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            +  ++ +   +F +L I   +      I  +  ++   I      L   +    L  +K
Sbjct: 291 EVSPRQGRYMKLFPALLIFASLIVALMAIKTRASKDEIGIWAYPAVLLVYAVAGALFSRK 350

Query: 357 K 357
           +
Sbjct: 351 Q 351


>gi|16767725|ref|NP_463340.1| permease [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|56416251|ref|YP_153326.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161617774|ref|YP_001591739.1| hypothetical protein SPAB_05637 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167551264|ref|ZP_02345019.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167991269|ref|ZP_02572368.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168232820|ref|ZP_02657878.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168234610|ref|ZP_02659668.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168244031|ref|ZP_02668963.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262477|ref|ZP_02684450.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168464638|ref|ZP_02698541.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168821095|ref|ZP_02833095.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194446562|ref|YP_002043719.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194449673|ref|YP_002048503.1| hypothetical protein SeHA_C4884 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470492|ref|ZP_03076476.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194738007|ref|YP_002117400.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249048|ref|YP_002149399.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197262055|ref|ZP_03162129.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197365174|ref|YP_002144811.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198242808|ref|YP_002218343.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200388381|ref|ZP_03214993.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205355211|ref|YP_002229012.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859605|ref|YP_002246256.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238910635|ref|ZP_04654472.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16423045|gb|AAL23299.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56130508|gb|AAV80014.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161367138|gb|ABX70906.1| hypothetical protein SPAB_05637 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405225|gb|ACF65447.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194407977|gb|ACF68196.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194456856|gb|EDX45695.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194713509|gb|ACF92730.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195632823|gb|EDX51277.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197096651|emb|CAR62266.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197212751|gb|ACH50148.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197240310|gb|EDY22930.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197292043|gb|EDY31393.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197937324|gb|ACH74657.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605479|gb|EDZ04024.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205274992|emb|CAR40066.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205323911|gb|EDZ11750.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205330351|gb|EDZ17115.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333019|gb|EDZ19783.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205337021|gb|EDZ23785.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205342262|gb|EDZ29026.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205348818|gb|EDZ35449.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206711408|emb|CAR35787.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261249568|emb|CBG27435.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996824|gb|ACY91709.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160964|emb|CBW20498.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915576|dbj|BAJ39550.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|322615643|gb|EFY12563.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618703|gb|EFY15592.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322621884|gb|EFY18734.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627609|gb|EFY24400.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322630915|gb|EFY27679.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637866|gb|EFY34567.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642324|gb|EFY38930.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322643901|gb|EFY40449.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651023|gb|EFY47408.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656724|gb|EFY53012.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659852|gb|EFY56095.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322661937|gb|EFY58153.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666315|gb|EFY62493.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672734|gb|EFY68845.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676164|gb|EFY72235.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680648|gb|EFY76686.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684458|gb|EFY80462.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323132817|gb|ADX20247.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323194205|gb|EFZ79402.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197350|gb|EFZ82490.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201532|gb|EFZ86596.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206046|gb|EFZ91008.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323213057|gb|EFZ97859.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215428|gb|EGA00172.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219412|gb|EGA03897.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227716|gb|EGA11870.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228886|gb|EGA13015.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236502|gb|EGA20578.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239997|gb|EGA24044.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323241956|gb|EGA25985.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247895|gb|EGA31832.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251467|gb|EGA35338.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258167|gb|EGA41844.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323263687|gb|EGA47208.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265717|gb|EGA49213.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270161|gb|EGA53609.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326626151|gb|EGE32496.1| putative permease [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326630369|gb|EGE36712.1| putative permease [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332991289|gb|AEF10272.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 360

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 113/354 (31%), Gaps = 2/354 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++                +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVPKDIQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     +   + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYAFNDQRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  IS    F V       +  +   P  +  L            LM++K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 359


>gi|204927347|ref|ZP_03218549.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204324012|gb|EDZ09207.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 360

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 113/354 (31%), Gaps = 2/354 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++                +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVPKDIQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     +   + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYAFNDQRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  IS    F V       +  +   P  +  L            LM++K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPVVGALLPSASFFLISLWLMLRK 359


>gi|187731850|ref|YP_001882954.1| putative permease [Shigella boydii CDC 3083-94]
 gi|187428842|gb|ACD08116.1| putative permease [Shigella boydii CDC 3083-94]
          Length = 360

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 116/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  +  
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQT 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 359


>gi|330997889|ref|ZP_08321723.1| permease, YjgP/YjgQ family [Paraprevotella xylaniphila YIT 11841]
 gi|329569493|gb|EGG51263.1| permease, YjgP/YjgQ family [Paraprevotella xylaniphila YIT 11841]
          Length = 368

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 118/364 (32%), Gaps = 9/364 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
              ++Y+++    ++  S   I+ IA V    + I+  +++      I+ +     +P  
Sbjct: 9   SKLDVYLIKKFLGTYFFSIALIISIAVVFDFNENIDKFTTNHAPWKGIIFEYYANFVPYF 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ +   G S   L++P +  A ++++  F+    
Sbjct: 69  SNLFSPLFVFISVIFFTSKLAENSEIIAMMAAGMSFKRLMRPYMISAAIIAVMTFLLGAY 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK   T        +      + +          +           T     +    +
Sbjct: 129 VIPKGSVTRLNFENTYKKKKRTEFAQNVQLQVDTGVIAFIEHFDGRTKTGYHFSLDKFVN 188

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +      A S S D    +R    +N+  +     + + IS        +  E ++   
Sbjct: 189 KKLVSHLTAASVSYDTLSDERYHWRINNYTLRELKGMREYISHGSRIDSIIAMEPSDFLL 248

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +        L              ++ +  E+ KR        I  +I +      A
Sbjct: 249 TRNQQETLTSPELKEYIVKQRARGSGNVKPFEVEYQKRFATPFASFILTIIGLSL---SA 305

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKK 356
             R+      + I L++S   +  F  +      N  + P L  +L   I +     + K
Sbjct: 306 RKRKGGMGLYLGIGLALS-ASYILFQTVSSTFAINADWPPALAAWLPNIIFAFIAFFLYK 364

Query: 357 KYTK 360
           K  +
Sbjct: 365 KAPQ 368


>gi|312142844|ref|YP_003994290.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
 gi|311903495|gb|ADQ13936.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
          Length = 1063

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 120/344 (34%), Gaps = 8/344 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YIL+ +   FL+    I  I          +L+       +++ ++  Y +P V+
Sbjct: 4   KLMDKYILKEVSYPFLLGVFIITIILVGSYFFHLADLIIVKNVPFSLVFRLLLYRLPGVM 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P      T   +  +NR  E+  +   G S   L+ P+  L +L+S F F+    I
Sbjct: 64  VETFPIAVLFATMTAINRLNRENEITALRMGGVSIFRLVLPLFILGLLISSFTFLLNENI 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      + +  +  L       E  +FF+        +S YN ++      ++    +
Sbjct: 124 VPWTNHQAQNIIRQTILKDAMPDPESEVFFQGPRGRLFYVSSYNQSSGELKNIVIYQLAS 183

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI--V 239
           +        +    ++  A +LN G +H+ +   + I   KF    ++        +   
Sbjct: 184 EAEFPEVITAVDGLVEDNAWLLNTGIIHQYNQGGEIILESKFNQMEIELTDQMREVMGTQ 243

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               + +   L              + +   ++H +L + L  ++F     +       +
Sbjct: 244 KSTAEMSRGELGRR-IELFRRSGIGVNSLLVDYHLKLAEPLAALLF-----ILISLPLSL 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
             ++     FI   I   +++          +N    P+L  +L
Sbjct: 298 SSKESSTWNFILTIIIVFLYYVVLSFSRSFGRNEVLSPLLAAWL 341


>gi|258622808|ref|ZP_05717826.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258584996|gb|EEW09727.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 366

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 118/357 (33%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAGFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +    QL  +     +   L++  F R  D   +       N  L  +F+       
Sbjct: 122 PWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLHNVFVAQLAPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +               +   RQ I L +G  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSNSGDVKELSDGRQIITLYNGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LL                 ++E   RL+     V   L++++     A
Sbjct: 242 SGRDWEALPTLSLL----------KNSDLQAQAELQWRLSL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +  ++ +   +  ++ I    F   S     I ++     I+ L+    + +F  +I
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALSATKSAI-EDGSLPVIIGLWPVNAALLFAALI 344


>gi|294492514|gb|ADE91270.1| putative permease [Escherichia coli IHE3034]
 gi|307629338|gb|ADN73642.1| hypothetical protein UM146_21570 [Escherichia coli UM146]
 gi|315288387|gb|EFU47785.1| putative inner membrane protein [Escherichia coli MS 110-3]
 gi|323950669|gb|EGB46547.1| inner membrane protein yjgQ [Escherichia coli H252]
 gi|323955548|gb|EGB51312.1| inner membrane protein yjgQ [Escherichia coli H263]
          Length = 360

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 117/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAAAAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 359


>gi|288799848|ref|ZP_06405307.1| membrane protein [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333096|gb|EFC71575.1| membrane protein [Prevotella sp. oral taxon 299 str. F0039]
          Length = 377

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 122/363 (33%), Gaps = 9/363 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  + YI++    +++ S L I+ +A V  + + +   +     L  I+       +P  
Sbjct: 18  KILDWYIIKKFIGTYIFSILLIISVAIVFDVNENLARFAQYHAPLKAIVFDYYANFVPYF 77

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ I   G S   L++P +    L+S+  +   + 
Sbjct: 78  ANLFSPLFVFIAVIFFTSKLAGNSEIISILAAGVSFKRLMRPYMISCALISMLSYYLSSN 137

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   A  +     +  +  L       +       N +    G  +    +
Sbjct: 138 VIPHGTVIRQNFEALYKNKTKNTSADNVLLQVDKGVIAYIQHYDNNSKRGYGFSLDKFNN 197

Query: 181 TQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +      A       I   +    +++ +  +   + + I+    +   +  E  +   
Sbjct: 198 KKLVSHLTATEIQYDTISDTKYHWTISNWKTRKLEGLKEKITTGAQRDTIIMMEPTDLVY 257

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +      + L +      +     +  Y+ E+HKR+       I   I +      +
Sbjct: 258 SKGQQETFTSAQLQDYISKQIDRGSSNVVQYQVEYHKRIASSFASFILTTIGLSL---SS 314

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKK 356
             R+      + I L++SFG +     +      N    PI+  ++   I S+      +
Sbjct: 315 RKRKGGMGLYMGIGLALSFG-YIMLQTVSATFAINANTPPIIAAWIPNIIFSLVAYFCYR 373

Query: 357 KYT 359
           K  
Sbjct: 374 KAP 376


>gi|291514726|emb|CBK63936.1| Predicted permeases [Alistipes shahii WAL 8301]
          Length = 367

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 121/363 (33%), Gaps = 8/363 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  + YIL     ++  +   I+ I  V   +++I+  +     L +++L      IP  
Sbjct: 9   KILDRYILGKFLSTYFFAIAMIIVIVVVFDYVEKIDDFTELHAPLKSVILDYYLNFIPYF 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +   +     +      + M   TE++ + + G S   L+ P    A++++         
Sbjct: 69  INQFSGLFTFIACIFFTSKMAYQTEIVAMLSGGMSFRRLMWPYFLGALIIASLSLTLNLW 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +  I     +       +  + +++ +++  ++  I  YN        F+++  +
Sbjct: 129 LIPISQRHIVAFEQQYIKRKQNTKYDRHIYRQIEPGIFAYIRGYNDGARQASFFVLERYE 188

Query: 181 TQTHKIYYAQS-GSIDLDRQAIILNDGEVHRKSP-ISKDISIMKFKSYTLQTESANSSTI 238
           + T       S    + + +                ++     +     +  E+     I
Sbjct: 189 SGTMTHSLEASDAKFNPETKRWTAPRYTKREFDSAGTETFEQFRNLDTLINLEATELGEI 248

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                  N+S L            + +     E H R    L   I  LI +      + 
Sbjct: 249 NDLIQTMNISELNAFLDQQRAKGSDSINLIEVEKHARYAYPLSTFILTLIGVSL---SSR 305

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL-LMIKKK 357
             +      I I   + F  +  F+    +  ++    P L ++L  I  + + + + +K
Sbjct: 306 KVRGGTGLHIGIGTGLCFS-YILFNRFFEEFAKSGTLPPGLAVWLPNIIYLGIAVYLYRK 364

Query: 358 YTK 360
             K
Sbjct: 365 APK 367


>gi|110637606|ref|YP_677813.1| permease [Cytophaga hutchinsonii ATCC 33406]
 gi|110280287|gb|ABG58473.1| conserved hypothetical protein; possible permease [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 359

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 123/359 (34%), Gaps = 2/359 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILL-KISGYLIPT 59
           MK  +LYI++    ++    L  + +  VI I +++        S+  +L +     IP 
Sbjct: 1   MKKLDLYIIKKFLVTYFFVVLMFMLVITVIDITEKMEDFMKHKLSIWFILVEYYFAFIPY 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +  +++P    + T  V  ++   TE++ + ++G S   ++ P L  +IL++  +F    
Sbjct: 61  MANLLSPITIFIATIFVTANLAARTEIIAMLSSGMSLTRIMYPYLIGSILIAFMVFYMSG 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P           K   +  F                   S  +  N      +    
Sbjct: 121 WLIPHGNKKRVDFEKKYIKSTFFYEGRNVHMKTAPTTYVYIESYNSEINVGYQFTLETII 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANSSTI 238
           D +      A   + +   +   + +  + R +    +++   +     L     +    
Sbjct: 181 DNRLVSKLKAARMNWNDSTKKWRMEEYFIRRFTEDGKEEVFKGRGLDTALTITPKDFEDT 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            +     ++  L N          E + TY +E ++R T     +I  LI ++A+ +++ 
Sbjct: 241 YMLFETYDMGELNNQIALLEARGSENISTYITEKYQRYTYPFSVIILTLIGVIASSRKSR 300

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I   F+   +          + +     P +   +   +F +  + +     K
Sbjct: 301 EGAGLTIAFGFLLAFVYIIFMITSRSLANVGGIGPLFASWIPNIVFIVIGLIMYRRVPK 359


>gi|209921759|ref|YP_002295843.1| hypothetical protein ECSE_4568 [Escherichia coli SE11]
 gi|209915018|dbj|BAG80092.1| conserved hypothetical protein [Escherichia coli SE11]
          Length = 360

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 117/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEEFGGISIYAFNENRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 359


>gi|281603538|gb|ADA76522.1| Inner membrane protein yjgQ [Shigella flexneri 2002017]
          Length = 361

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 117/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 8   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 67

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 68  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 127

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 128 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEVLGGISIYAFNENRRL 187

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 188 QSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTDLTPDKLGVVALDP 247

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 248 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 306

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 307 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 360


>gi|82779328|ref|YP_405677.1| hypothetical protein SDY_4286 [Shigella dysenteriae Sd197]
 gi|81243476|gb|ABB64186.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 361

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 116/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 8   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 67

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +          P
Sbjct: 68  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWAAP 127

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 128 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRL 187

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 188 QSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 247

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 248 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 306

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 307 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 360


>gi|152978628|ref|YP_001344257.1| permease YjgP/YjgQ family protein [Actinobacillus succinogenes
           130Z]
 gi|150840351|gb|ABR74322.1| permease YjgP/YjgQ family protein [Actinobacillus succinogenes
           130Z]
          Length = 354

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 127/357 (35%), Gaps = 4/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + E YI + I  +   + L +V ++ +I+ +++   V   T      +  +   IP  
Sbjct: 1   MNTLERYIGKSILGTIFATLLTLVGLSAIIKFVEQFRSVGKGTYDSLQAVLYTILTIPKD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ + G SR+ +   V+  AI L +   +    
Sbjct: 61  VETFFPMAALLGALIALGNLASRSELIVMQSAGFSRLKIGIAVMKTAIPLVLITMVIGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+     + + AKA    +   ++ +++ +  +D    + +   +  L+ ++I    +
Sbjct: 121 GIPQTEQYARDMRAKAISGGSLMSVKNSVWAKDGNDFIF-VRQVREDANLRDVYIYHFDN 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q  ++ +A S + +  +  +   +                  + +           + L
Sbjct: 180 RQLQRLSHANSATYERGKWQLHQLNVSD--IQAEQIFTKNYVSQEWKTSLTPDKLGIVSL 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    ++S L +      +   +  + +   + ++L Q +   +  ++++          
Sbjct: 238 RPTSLSISGL-SEYIAFLHQTGQDSKKFELTYWRKLFQPISVGVMMMLALSFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    I     F V       +  +      +  L   +  +   + L+ +K+
Sbjct: 297 TAGARIVTGICFGFLFYVINEIFGPLSLVYNVTPIVGALMPSILFLVITWWLLSRKR 353


>gi|34498371|ref|NP_902586.1| hypothetical protein CV_2916 [Chromobacterium violaceum ATCC 12472]
 gi|34104225|gb|AAQ60584.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 358

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/352 (12%), Positives = 116/352 (32%), Gaps = 2/352 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI+  + +S L + L ++ +     +L  +  + +   +  ++      LIP  
Sbjct: 1   MKLIHRYIVSTLTQSTLFTLLALLGLYGFFDLLGEVPALGTGNYTAGVMATYVALLIPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     +T +  ++E  +I  +G +   +   +L   +  ++   +    
Sbjct: 61  AYELMPLAVLIGGMVAMTQLASSSEYTVIRTSGVTLKQIAATLLKFGLGFAVLTILLGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P      ++    A  ++         + + + +          N  L        +D
Sbjct: 121 AAPWAMQEAERTRLTATHSIVAKEFRSGTWVKDNQNFINVHEMLPDNTLLGIRIYTYDQD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +   A+ G+     ++  L + +    +P     ++     +    E    S +++
Sbjct: 181 FKLERTRIAERGTFSKQDRSWQLENVKETVLAPNRTISAVYPTLKWKSIVEPEILSVLLV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   LL     +     +  + Y      +L   L  +   L+++    ++    
Sbjct: 241 VPEQMSAHNLL-TYIEHLKKNKQQTQRYEIALWSKLFYPLACISMALVALAFTPQQRRHG 299

Query: 301 QRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           Q        I L ++F  V   F ++    + N      L   +F +  I +
Sbjct: 300 QLGIKLFAGICLGVTFHFVNRLFGHLGLLYDWNAILSATLPTLIFLLGGIAI 351


>gi|323166626|gb|EFZ52385.1| hypothetical protein SS53G_3092 [Shigella sonnei 53G]
          Length = 360

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 116/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        +  
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAS 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 359


>gi|209964086|ref|YP_002297001.1| predicted permease YjgP [Rhodospirillum centenum SW]
 gi|209957552|gb|ACI98188.1| predicted permease YjgP [Rhodospirillum centenum SW]
          Length = 359

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 115/354 (32%), Gaps = 2/354 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   Y+ R      L   + +  +  ++ +L   + V     +L  L   +   +P+++ 
Sbjct: 4   TLARYLSRQFLVRSLAVLVALTALLQLLDLLDAASRVLERGGALGDLGTYALLRLPSIVE 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + +   L  + +N E++ + + G +   L+  ++  A+ +++F  I  + I 
Sbjct: 64  RLVPLAVLVGSLTTLYGLVQNNEIVAMRSAGLTPYQLLATLMPAAVAIAVFHLILSDQIA 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSRDT 181
           P+         A+ +               L     I  ++       +   + +  RD 
Sbjct: 124 PRAERAFLTWWAETEPPTDDDLPLAEKKLWLRVGNTIVAAERVLERGARLEQVSLYPRDD 183

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           Q       ++ +         L DG     +             + ++   AN   ++  
Sbjct: 184 QGRVTERTRAAAAVYGDGNWTLLDGTRLDLTRGDFKAEPFARAPWPVRLHPANVVEVLQP 243

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             +  L  L +    +     +    Y +  H+     L  +I  L++   A        
Sbjct: 244 TENIPLLRLRSILRGD-WAGRQSPAYYETRLHETYAGPLATLIMVLLAAPVAHGMRRSGA 302

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                 + I + +++ +  G    + +    P  I      +F  +    +++ 
Sbjct: 303 VGGSMALGIGIGLTYLLADGMLAALGEAGAMPAVIAAWAPTVFFAAVGGAILVH 356


>gi|254481253|ref|ZP_05094498.1| putative permease, YjgP/YjgQ family [marine gamma proteobacterium
           HTCC2148]
 gi|214038416|gb|EEB79078.1| putative permease, YjgP/YjgQ family [marine gamma proteobacterium
           HTCC2148]
          Length = 353

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 106/357 (29%), Gaps = 4/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + ++   +  + L+    IV +  +   +   + + S T +   +       +P  
Sbjct: 1   MRKLDRHVGWTVFVAILLVLAIIVGLDAIAAFIDEADDI-SKTYTFGQVGLYILLTLPGR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF   +     L  +  ++EL+++   G S   L+   +  A+L++I  F     
Sbjct: 60  LYEFIPFAALIGCMLGLGQLATSSELVVMRAAGVSTGRLVWVAMKPALLIAIMGFSLGEF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+     +   A AQ           ++ R  +      +            +    D
Sbjct: 120 VAPETEQMAETQRALAQNPGESFGGRYGIWNREGNTFLHFNAVEAGGVVHGITMLEFDED 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                   A+  S   +     + D  +   S         +   +         + + +
Sbjct: 180 LLMEYSLRARRASF--EGGYWTMEDAVLTNFSSWQTTRETHEVMRWDTGITPELLTVMAV 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +     +S L   +      +    + Y+     ++ Q        L++I          
Sbjct: 238 EPEYLPISDLYRFS-RYLQSQGLDSDDYQLALWGKILQPAAIGALVLVAISFIFGPLREG 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    + + I F            +         L   L C ++  LL+++ +
Sbjct: 297 TMGFRIFAGVIVGIVFRTSQDLLGPASLVFGFAPIYAALVPILLCGAAGMLLLLRAR 353


>gi|15804854|ref|NP_290895.1| hypothetical protein Z5874 [Escherichia coli O157:H7 EDL933]
 gi|26251171|ref|NP_757211.1| hypothetical protein c5363 [Escherichia coli CFT073]
 gi|254037286|ref|ZP_04871363.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|291285674|ref|YP_003502492.1| Inner membrane protein yjgQ [Escherichia coli O55:H7 str. CB9615]
 gi|332281055|ref|ZP_08393468.1| conserved hypothetical protein [Shigella sp. D9]
 gi|12519274|gb|AAG59461.1|AE005658_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|26111603|gb|AAN83785.1|AE016771_296 Hypothetical protein yjgQ [Escherichia coli CFT073]
 gi|537104|gb|AAA97159.1| ORF_o361 [Escherichia coli str. K-12 substr. MG1655]
 gi|13364717|dbj|BAB38662.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|209749438|gb|ACI73026.1| hypothetical protein ECs5239 [Escherichia coli]
 gi|209749440|gb|ACI73027.1| hypothetical protein ECs5239 [Escherichia coli]
 gi|209749442|gb|ACI73028.1| hypothetical protein ECs5239 [Escherichia coli]
 gi|209749444|gb|ACI73029.1| hypothetical protein ECs5239 [Escherichia coli]
 gi|209749446|gb|ACI73030.1| hypothetical protein ECs5239 [Escherichia coli]
 gi|226840392|gb|EEH72394.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|290765547|gb|ADD59508.1| Inner membrane protein yjgQ [Escherichia coli O55:H7 str. CB9615]
 gi|332103407|gb|EGJ06753.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 361

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 117/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 8   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 67

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 68  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 127

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 128 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRL 187

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 188 QSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 247

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 248 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 306

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 307 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 360


>gi|152987845|ref|YP_001346668.1| hypothetical protein PSPA7_1283 [Pseudomonas aeruginosa PA7]
 gi|150963003|gb|ABR85028.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 372

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 123/365 (33%), Gaps = 25/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   +        L  I  + IP  L 
Sbjct: 2   IVFRYLSREVLVTMSAVSAVLLVIIMSGRFIKYLAQAAQGLLDPGSLFLIMAFRIPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A+L++I +      + 
Sbjct: 62  LILPLGLFLGILLAYGRLYLESEMTVLSATGMSQKRLLGYTMAPALLVAILVAWLSLFLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+  +    L  K      F  L    F  + D   +  ++    +  +   I  S+   
Sbjct: 122 PQGINQFALLLNKQDTLTEFDTLVPGRFQAMRDGTRVTYTEELSKDRGELAGIFISQKDL 181

Query: 183 THKIYYAQSGSIDLDR----------QAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
                      +  ++          + +IL++G  +  +P   +   +K+ +Y +    
Sbjct: 182 NSSNQERGISILVAEKGTQNIQADGSRYLILHNGYRYDGNPGQANYRAIKYDTYGVMLPK 241

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
             +S+ V + +      L                 Y++E   RL+  L   +  L+++  
Sbjct: 242 PEASSEVSERDAVPTVDLF----------GSDNPRYQAELQWRLSTPLLVFVVTLLAVPL 291

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIF 350
                +  ++ +   +  ++ +          +  ++   + P  + + ++    ++   
Sbjct: 292 ---SRVNPRQGRFLKLLPAILLYMAYLALLIAVRGQLDKGKIPMAVGLWWVHGLFLAIGL 348

Query: 351 LLMIK 355
           +L   
Sbjct: 349 ILFYW 353


>gi|170718033|ref|YP_001785073.1| permease YjgP/YjgQ family protein [Haemophilus somnus 2336]
 gi|168826162|gb|ACA31533.1| permease YjgP/YjgQ family protein [Haemophilus somnus 2336]
          Length = 356

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 127/357 (35%), Gaps = 3/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + YI + I  + L + L +V ++ +I+ +++   +   T  +      +   +P  
Sbjct: 2   MNTLDRYIGKNILGTILATLLMLVGLSAIIKFVEQFRSIGKGTYDVIQATLFTLLTMPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L ++   +EL++I + G SR  +   V+  A+ L +   I    
Sbjct: 62  IETFFPMAALLGSLIALGNLASRSELIVIQSAGFSRFRIGLAVMKTALPLMLITMIIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+      +      ++       +N  +  D + +I + +   + +L  I+I    D
Sbjct: 122 GIPQTEH-FARDMRAKAISGGSMLSVKNSIWAKDGNDFIYVGRITNDISLNDIYIYSFDD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  K     + +     +  +    +    +   K I+ +K  +++            L
Sbjct: 181 KRQLKQVTHANQASFEHGKWKLSGINQSQIFADEIKTINRLK-DNWSTTLTPDKLGIASL 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    +++ L N          +  + +   F +++ Q +   +  L+++          
Sbjct: 240 RPTSLSMTGLYN-YIKFMKETGQDAKRFELTFWQKVFQPVSVAVMMLLALSFIFGSLRSV 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    I     F V       +  +   P  +  L   L  +  I+ L+ +K+
Sbjct: 299 TAGARIVTGIFFGFLFYVINEILGRLSLLYDIPIVLAALIPSLLFMILIWWLLNRKR 355


>gi|260427738|ref|ZP_05781717.1| permease, YjgP/YjgQ family [Citreicella sp. SE45]
 gi|260422230|gb|EEX15481.1| permease, YjgP/YjgQ family [Citreicella sp. SE45]
          Length = 364

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/359 (10%), Positives = 109/359 (30%), Gaps = 13/359 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y  R     F+           ++ ++++I        S    ++I+   +P  + 
Sbjct: 2   ILHRYFARRFFWMFMSILSVFAIFVGLVDLVEQIRKF-GGDISFAQKVQITALRLPEGMY 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   + R++EL+++   G S +T +   + +A+ +S       N + 
Sbjct: 61  EILPLVMILATAALFLMLARSSELVVVRAAGRSGLTALMGPMMVALAISGVTVAMLNPLV 120

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR------LDDDLYIKISKYNPNNTLQGIFIV 176
                    L+   +                         +            L  +  +
Sbjct: 121 AATSKRASDLAESYENDGASVISIGKEGLWLRQGSSDGQAVIRAARANPDATVLYDVSFL 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESAN 234
              +          + +   D    + +       +  + + +  +     +       +
Sbjct: 181 QYAEDGGPIRRVEAAEAALEDGAWALRDAKVWPLGTRANPEAAAERHDRLRIASDLTQND 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +   +  L +   N           +   F   L + +F V   L++  A  
Sbjct: 241 IRDRFGKPSAVAIWDLPD-FINGLEQAGFSARRHEVWFQMELARPIFLVAMVLVA--AGF 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                R  +    +  ++ + FG+++  ++    + +N    P+   ++  ++S+ L +
Sbjct: 298 TMRPARLGRTGLYVLAAVLLGFGLYYVRNFAQ-IMGENGQLPPLFAAWVPPVASLMLAL 355


>gi|283786944|ref|YP_003366809.1| permease [Citrobacter rodentium ICC168]
 gi|282950398|emb|CBG90046.1| putative permease [Citrobacter rodentium ICC168]
          Length = 360

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 114/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++                +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  +                      +   + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNSFVYIERVKGDEELGGISIYAFNDQRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   D +++   L+  +      P     S     ++           + L  
Sbjct: 187 QSVRYAASAKFDPEQKVWRLSQVDESSLQDPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPVIGAL-LPSASFFFISLWLMMRK 359


>gi|188995335|ref|YP_001929587.1| hypothetical protein PGN_1471 [Porphyromonas gingivalis ATCC 33277]
 gi|188595015|dbj|BAG33990.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 363

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/362 (11%), Positives = 115/362 (31%), Gaps = 7/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +   + Y+++    +F+ S + I+ ++ V  I ++I+       SL +I+       +P 
Sbjct: 7   LNRLDKYLIKQFLGTFVFSIILIISVSVVFDINEKIDDFMKPEVSLRSIIFDYYFNFVPY 66

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +   +E++ + + G S   L+ P +  A +++I  F+  +
Sbjct: 67  YANLFSPLFVFISVIFFTSKLAEKSEIIAMLSAGVSFKRLMVPYMLSATVIAILTFLLNS 126

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P      +       +        E++   +   ++     Y+        F ++  
Sbjct: 127 FVIPPGN-ATRIDFQNKYIKNKKVQYAESVQLEVKKGVFAFFGSYSDAMRTGYQFSLEEF 185

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +                    + +  +       + +         +    A+     
Sbjct: 186 KGKQLVSRLTADRIQYDSLYNWRIFNYRIRHFGKYKETVESGSEMDTVIAVRPADFLVAE 245

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                   + L     +        ++ +  E HKR        I  +I        +  
Sbjct: 246 DDVETMTTTDLHTYISHQKQRGVGNVKLFEIELHKRYAAIFSAFILTIIGASL---SSRK 302

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKKY 358
            +      I I L +SF  +  F  +      +    P +  +L   + ++  + + KK 
Sbjct: 303 VKGGMGINIAIGLGLSFA-YILFMTVAGTFAISGSLPPFMAAWLPNFVFTVIAVFLYKKA 361

Query: 359 TK 360
            +
Sbjct: 362 PR 363


>gi|170767103|ref|ZP_02901556.1| putative permease [Escherichia albertii TW07627]
 gi|170124541|gb|EDS93472.1| putative permease [Escherichia albertii TW07627]
          Length = 360

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 116/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M    +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMMLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        I P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAMGEWIAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAASAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFVISLWLLMRK 359


>gi|114768924|ref|ZP_01446550.1| Predicted permease [alpha proteobacterium HTCC2255]
 gi|114549841|gb|EAU52722.1| Predicted permease [alpha proteobacterium HTCC2255]
          Length = 407

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 133/357 (37%), Gaps = 4/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + Y+ + +   F   C  I  I  + Q L  I++V+ + +   I+ ++S  ++P VL
Sbjct: 34  TKLDRYLFKQLIGPFAFFCFIISGILLLNQALGIIDIVTENGQPAYIVFELSFLILPKVL 93

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
                    + +  ++  +    ELL++ + G S I L KP L   IL++  LF+  + +
Sbjct: 94  ITAISISGFIASVLIINRLYNEEELLVMMSIGRSFIELSKPFLLFGILIASLLFLVVHNL 153

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   S   +   + +       ++ + F    +           N  L  I I +    
Sbjct: 154 NPYAHSKFIEAQERIKKEYVTQIIKPDQFISYQNKYTFFFGDKGNNGELSEILIEEQITP 213

Query: 182 QTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI- 238
            T   + A++G +  ++ +   +L +G     + +S   S+++F +           TI 
Sbjct: 214 DTTLTHIAKNGQVIANKDSNALLLRNGSTQSYNKVSGTFSLLQFDTLVFDLNQLRKDTIS 273

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              +     S +L    +        L    S +H R  + L  ++F L+ ++       
Sbjct: 274 SESSLSSLNSTMLKKKISALESFDPRLGRAVSLYHDRNAKVLLAMLFPLLGMLGLLLGGF 333

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            R    I  I   + I   +          + +NP   P  YL     + I  L+I 
Sbjct: 334 NRFGYLIR-IISCILIMASLDLLRGASKSWVVENPLIWPAQYLSPLLCTFIIALIIW 389


>gi|322514885|ref|ZP_08067902.1| YjgP/YjgQ family membrane protein [Actinobacillus ureae ATCC 25976]
 gi|322119139|gb|EFX91289.1| YjgP/YjgQ family membrane protein [Actinobacillus ureae ATCC 25976]
          Length = 360

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 122/358 (34%), Gaps = 5/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI + I        L    + ++I++ +    V   +         S  ++P+ 
Sbjct: 6   MNILERYIGKTIITMIFAVLLMSSGLVFIIKLAEEFKDVGKGSYDALTATYYSLLMLPSD 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ ++G SR  +   V+  AI L +F  +    
Sbjct: 66  IKEFIPVVALIGGLLGLGNLASRSELVVMQSSGFSRFRIGLAVMKTAIPLIVFTMLVSEW 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+      +       + +     +  F+  D + +I I        L  + I    D
Sbjct: 126 GIPQT-EQYARNMRSIAQSGSSMLSTKGGFWAKDGNDFIYIRHIENERKLNNLSIYHFED 184

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +  AQ+     + +   L + +    +  S   +    K +      +    + L
Sbjct: 185 KSLKSVTQAQNAIF--NGKNWTLQNVQTSSIADNSIQQAKEVNKDWQTTITPSKLGIVSL 242

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++S L +          +  + ++  F +++ Q +   +  L++I          
Sbjct: 243 KPESLSISGL-SDYVGFLKETGQNSKRFQIAFWRKVYQPISMAVMMLLAISFVFGPLRSS 301

Query: 301 QRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I I     F V    F  +       P  I  L   L C+S ++ L+ KK+
Sbjct: 302 AMGTKLFIGIIAGFVFYVSNIVFGNMTLVFSWIPVAIGALIPSLICLSIVWWLLTKKR 359


>gi|300718540|ref|YP_003743343.1| permease [Erwinia billingiae Eb661]
 gi|299064376|emb|CAX61496.1| putative permease [Erwinia billingiae Eb661]
          Length = 358

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 120/355 (33%), Gaps = 2/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + + +   +V ++ +I+ + ++        +       +   +P  + +
Sbjct: 5   LDRYIGKTIFNTIMATLFMLVSLSGIIKFVDQLRKTGQGEYTALGAGLYTVLSVPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++ + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGTLAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIGEFVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+  +  +    +  L+ +  D+        + +          +++ + 
Sbjct: 125 QGEQMARNYRAQQLVGGSLLSTQNGLWAKDGDNFIFIEQIKDNSELSGISIYSFNKERRL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   ++D++   L + +      P     S      +           + L  
Sbjct: 185 ETVRYAASAKYNVDKKRWDLAEVDQSNLTDPKQVTGSQTLSGEWKTTLTPDKLGVVALDP 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          ++   Y+     ++ Q L   +  L+++            
Sbjct: 245 DALSISGLYN-YVKYLKQSGQVSSRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVSM 303

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  +  L       +    +++K++
Sbjct: 304 GMRVVTGISFGFIFYVLDQIFGPLSLVYNIPPIMGALLPSGAFFAISVYMLLKRR 358


>gi|169634642|ref|YP_001708378.1| hypothetical protein ABSDF3307 [Acinetobacter baumannii SDF]
 gi|169797503|ref|YP_001715296.1| hypothetical protein ABAYE3539 [Acinetobacter baumannii AYE]
 gi|184156573|ref|YP_001844912.1| permease [Acinetobacter baumannii ACICU]
 gi|213155683|ref|YP_002317728.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB0057]
 gi|239502071|ref|ZP_04661381.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB900]
 gi|260556395|ref|ZP_05828614.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii ATCC
           19606]
 gi|301512956|ref|ZP_07238193.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB058]
 gi|301594832|ref|ZP_07239840.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB059]
 gi|169150430|emb|CAM88327.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii AYE]
 gi|169153434|emb|CAP02576.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii]
 gi|183208167|gb|ACC55565.1| predicted permease [Acinetobacter baumannii ACICU]
 gi|193076099|gb|ABO10703.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
 gi|213054843|gb|ACJ39745.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB0057]
 gi|260410450|gb|EEX03749.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii ATCC
           19606]
          Length = 366

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 120/354 (33%), Gaps = 14/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +      +IL  I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + ++ + ++  +   +    + 
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWMT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      ++L+    +   F  +    F           S       L+ IF       +
Sbjct: 122 PWGLREFEKLTTTQAVRTGFDLVRPREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAKE 181

Query: 183 THKIYYAQSGSIDLDR------QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                   +               + L  G  +   P     +  +F+SY L+ E+    
Sbjct: 182 GKPDVMILAKEATRVEVANDTANVVDLVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKDV 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  +   +  L    N+P          RSE   RL      +I  ++S+  ++  
Sbjct: 242 KFESGDVEALSTSKLFSKANDPV--------VRSELGWRLFGPFTIIIALMLSVALSEVS 293

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
               +  ++ P     +    +       I K E + +  P+  L     +++F
Sbjct: 294 PRQGRYYRLIPSIFIFASLIVLMIAIKTRISKGELDIWAYPVALLVYAIAAALF 347


>gi|91213818|ref|YP_543804.1| hypothetical protein UTI89_C4869 [Escherichia coli UTI89]
 gi|117626606|ref|YP_859929.1| hypothetical protein APECO1_2132 [Escherichia coli APEC O1]
 gi|237703938|ref|ZP_04534419.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91075392|gb|ABE10273.1| hypothetical protein UTI89_C4869 [Escherichia coli UTI89]
 gi|115515730|gb|ABJ03805.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|226901850|gb|EEH88109.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 361

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 117/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 8   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 67

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 68  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 127

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 128 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRL 187

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 188 QSVRYAAAAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 247

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 248 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 306

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 307 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 360


>gi|74316600|ref|YP_314340.1| hypothetical protein Tbd_0582 [Thiobacillus denitrificans ATCC
           25259]
 gi|74056095|gb|AAZ96535.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 356

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 104/355 (29%), Gaps = 4/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+   +  +     L ++ +     ++Q +  +  +         +    +P  
Sbjct: 1   MNLLARYLAGQVLAASGFMLLALLVLFAFFDVVQELGNL-RAGYGFGQATIVVLLNVPGH 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    + T   L  +  N+E  ++  +G S   +      + + L++ + +    
Sbjct: 60  LYEILPVAALIGTLFALARLVGNSEYAVMRVSGLSNWRVAAYFGVIGVWLALLVLLLGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      ++    A  ++        L+ +        + +  P+NTL+GI I     
Sbjct: 120 VAPWSDQAAQRYKLSATRSVVAQQFRSGLWVKDGSTFIN-VREVMPDNTLRGIEIYGFDQ 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                   A   +     +   L      R S            ++         S +++
Sbjct: 179 EGRLDWIRAAEIATWRGDKTWQLQTVVETRFSADGIRAQRSANLAWRSVLTPEILSVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L      +     +    Y      +        I  LI++  A +    R
Sbjct: 239 APEKMSARAL-WRYIAHLKANGQKASRYELALWSKFISPFVIPIMMLIAMPFAIQSPRAR 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                    I   + F +       +  +   P ++ +  L L     I L  I+
Sbjct: 298 GTSVKVFFGILAGLGFHLLSRLFGHLGLLNDWPAFV-VSALPLLIFLGIALAGIR 351


>gi|296114026|ref|YP_003627964.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis RH4]
 gi|295921720|gb|ADG62071.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis RH4]
          Length = 396

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 129/368 (35%), Gaps = 21/368 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   +  +  +   F+V I    ++++   + +    ++ +L ++ GY  P  L 
Sbjct: 16  ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYNFPYFLE 75

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  + + ++ L ++L         + +
Sbjct: 76  LILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVAK 135

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-----------YNPNNTLQ 171
           P        +  +  +A  F  +    F    D                       +T +
Sbjct: 136 PWGMERATNIWQEQSVAQVFDLIRPQEFISSGDYHLYVGEMGANREFLKDVIIIQMHTAE 195

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAII---LNDGEVHRKSPISKDISIMKFKSYTL 228
              I   +  Q   I +A+S +        I   L  G  +   P S+  S + F+ Y +
Sbjct: 196 PSDIQSRQSHQRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGFERYRM 255

Query: 229 QTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
                    T  ++    + + LL+      + + +  +   +E   RL+     ++   
Sbjct: 256 TLSVKPPEGTSHIRIEGVSTTELLS--IIQGHSKRDNPQEAYAELGYRLSMPWLILLAI- 312

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
             ++A     +  ++ + + +  ++ I          +   I +     P++YL    + 
Sbjct: 313 --LLATPLSYVRPRQGRWYKLVPAILIYVAGVLVVISLKDTIAK-GKLSPVIYLAALLMM 369

Query: 348 SIFLLMIK 355
            +  + + 
Sbjct: 370 MVVAMYLN 377


>gi|256829582|ref|YP_003158310.1| permease YjgP/YjgQ family protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256578758|gb|ACU89894.1| permease YjgP/YjgQ family protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 360

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 118/362 (32%), Gaps = 12/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YILR      L+ C   + I   I +  R++    +   L+ +     Y  P +
Sbjct: 1   MNLLTRYILRQNLFLLLLVCGIGLGIYVFIDLFDRLDNFLEAGVGLSSVGAYFLYRTPFI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P  F +     +  M R+ ELL ++    S   + K V++ A+ L +        
Sbjct: 61  LAQIFPAVFLIALMVQMGLMLRSRELLALEACSVSPGAVAKSVIWYALALCVAQLFFSEA 120

Query: 121 I-EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           +     R+  +  + + +          +L+FR  + +    S          + +    
Sbjct: 121 LGVSGHRAAERIWNEEVRDRQIEKRQLSDLWFREGNRIVHMGSVTPAAGRGLELTVHVLE 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D     I                L  G      P + ++         L+T+ ++   + 
Sbjct: 181 DDDAGSIREIIRAQEFTSAPEGWLLSGVTRTL-PATFEVQKAAQMELDLRTDVSSFLIVD 239

Query: 240 LKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            K   ++L  L L             +E  ++ +H +L      ++  LI++        
Sbjct: 240 PKTRLESLPLLQLGAEIKRLRDSGSNIERLQTAWHMKLAYAGSVLVMALIALAVV----- 294

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCISSIFLLMIK 355
                    I + L  +F  ++G   +     +     P+L  +    F  +     +++
Sbjct: 295 SFFGSLFVIIPLGLVATF-CYYGLFVLCASAGEKGLVPPVLAAWAANAFFTAVAGGWLLR 353

Query: 356 KK 357
            +
Sbjct: 354 GR 355


>gi|117618567|ref|YP_858153.1| putative permease [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559974|gb|ABK36922.1| putative permease [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 368

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 117/350 (33%), Gaps = 20/350 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R   ++ L     ++ I    Q +Q I   +       ++  +    +P +  
Sbjct: 2   IVFRYLFRETLKTQLAVLFVLLLIFVSQQFIQIIGDAADGEVPTRLVSTLLLLNLPNMAL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G S   +++  + LA+L +     +   + 
Sbjct: 62  LMLPISLFLAILFAHGRLYAESEMTVMHAVGFSHRFVMRSAMVLALLTAAVAAFNTGWVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV---DSR 179
           P+ +    Q+  + +     S+L+   F  LD    +   +   +   +   I     S+
Sbjct: 122 PQAKEREYQVIDEFKADPGISFLQAGRFMELDKGRLVAYIQDLNDKGSKLQKIFVLQRSQ 181

Query: 180 DTQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D +   +  A  G + +D    Q + L DG  +     ++   I +F  Y+L        
Sbjct: 182 DGKPPSVVVATEGVVTVDSNGLQWLTLKDGSRYEGHFNTRQFQISEFDEYSLVIRQQEME 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               KA  +    LL                  +E   RL+  L  ++   +        
Sbjct: 242 RSNRKAAAKPTMELL----------GTQDNQLMAELQWRLSLPLSILVLTFL---VVPLA 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFC 345
            +  ++ +   +  ++ +    F   S     I+     + P ++L    
Sbjct: 289 RVNPRQGRYAKLLPAILLYLSYFLLLSAARSAIDSGRLPHWPGMFLVPLV 338


>gi|74314741|ref|YP_313160.1| hypothetical protein SSON_4447 [Shigella sonnei Ss046]
 gi|73858218|gb|AAZ90925.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 361

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 116/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 8   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 67

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        +  
Sbjct: 68  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAS 127

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 128 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRL 187

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 188 QSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 247

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 248 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 306

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 307 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 360


>gi|219871562|ref|YP_002475937.1| permease [Haemophilus parasuis SH0165]
 gi|219691766|gb|ACL32989.1| permease, inner membrane protein yjgQ [Haemophilus parasuis SH0165]
          Length = 355

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 112/357 (31%), Gaps = 4/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R I  S +++   +V +  +I+ ++    V   +         +   +P  
Sbjct: 1   MNVLERYIGRTILASIMLTLFMLVGLGAIIKFVEEFRSVGRGSYDGLHAAYYTLLTMPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L  +   +EL+++ + G SR  +   V+  AI L +   I    
Sbjct: 61  IETFFPIAALLGSLMGLGGLASRSELVVMQSAGFSRFRIGLAVMKTAIPLMVITMIMGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+      +       +       +  F+  D + +I I +      L  I I    +
Sbjct: 121 GVPQT-EQYARNMRSIAQSGGSMLATQGGFWAKDGNDFIYIRQIQDERNLNNILIYQFEN 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                I  A+  +     Q  +L   +           +    +++      +    + L
Sbjct: 180 QVLKSIKQAEKATY--SEQGWLLQQVDKSEIHESGITQTRETDQAWKTSITPSKLGIVSL 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++S L +          +  + +   F +++ Q +   +  L++I          
Sbjct: 238 KPESLSISGLAD-YVGFLKDTGQDSKRFEITFWRKVFQPISMAVMMLLAISFIFGPLRSS 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I I     F V       +  I           +      S+   ++ KK
Sbjct: 297 TMGAKIVIGILAGFVFYVANIVFGNLSLIVSWLPVPIGALIPSLLCLSVVWWLLNKK 353


>gi|62182906|ref|YP_219323.1| putative permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62130539|gb|AAX68242.1| putative permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322717409|gb|EFZ08980.1| putative permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 360

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 114/354 (32%), Gaps = 2/354 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++                +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVPKDIQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAISLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                   V +   + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYVFNDQRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  IS    F V       +  +   P  +  L            LM++K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 359


>gi|54295469|ref|YP_127884.1| hypothetical protein lpl2555 [Legionella pneumophila str. Lens]
 gi|53755301|emb|CAH16795.1| hypothetical protein lpl2555 [Legionella pneumophila str. Lens]
          Length = 359

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/369 (12%), Positives = 120/369 (32%), Gaps = 22/369 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + +  + +     +V I    Q +Q +N  +S +    +++K+    +P ++ 
Sbjct: 2   IIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMG 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        +   +E+ ++   G     L+K    +A ++ + + I      
Sbjct: 62  LLLPLGFYIALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVVIWAS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +L     +      +    F  ++    I   +    +  Q   I  ++ + 
Sbjct: 122 PVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHSV 181

Query: 183 THKIYY---------AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
                              +     + I+L +G+ ++  P   D  I +F SY  +  + 
Sbjct: 182 QDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPNP 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
               +   A       L   N ++            +E   R++  L  +   L+++   
Sbjct: 242 TV-VMHDDARTAKTRDLWPLNNHDLKKA--------AELQWRISIPLMVLTLTLVAVPL- 291

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLL 352
               +  +  K   +  ++ I              I      +   ++     ++ + +L
Sbjct: 292 --SRVSPRSGKYSKLLPAIIIYIFYANFMFVSRDAIATGKIPWWIGMWWVHVAVAILGIL 349

Query: 353 MIKKKYTKI 361
            I +   K+
Sbjct: 350 FIWRNQVKL 358


>gi|254507394|ref|ZP_05119529.1| permease YjgP/YjgQ [Vibrio parahaemolyticus 16]
 gi|219549650|gb|EED26640.1| permease YjgP/YjgQ [Vibrio parahaemolyticus 16]
          Length = 356

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 120/356 (33%), Gaps = 4/356 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  M    ++ ++ +I+ ++++  V   +  L          IP  +
Sbjct: 3   KILDLYIGRTIIATTSMVLATLIGLSSIIRFVEQLRSVGKGSYDLLNAFYFVLLGIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +       +     L  +  ++EL+++  +G S++ +   VL  AI L + + +     
Sbjct: 63  ELFFAMSALLGALIGLGILASSSELVVMQASGYSKLDIGLSVLKTAIPLMLIIMLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +      ++           +  D D +I I K   +            + 
Sbjct: 123 APQAQ-KMARELRSFSISGGQIVSVRAGVWARDVDDFIFIGKVEDDTLYGVKVWRFDDEK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           + +++ +A       D Q ++ N         +    S +K  ++         + + ++
Sbjct: 182 KLYQVMFAPEADYLGDNQWLMKNAEITDMADKVELAKSKVKEYAWKTTLVPDKLAVVKVE 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             +  +S L +          +    Y     +++TQ +   +  L+++         R 
Sbjct: 242 PEELAMSGLYD-YVTYLKASEQDASRYELALWRKVTQPISIAVMMLLALSFVFGPL--RS 298

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 +   +   F  +    +             +  +    +     LM+ ++
Sbjct: 299 VSMGARVLSGVVAGFTFYISSEFFGPLTLVYGIPPAVGAVMPSLVFLTLALMLLRR 354


>gi|53803847|ref|YP_114531.1| hypothetical protein MCA2101 [Methylococcus capsulatus str. Bath]
 gi|53757608|gb|AAU91899.1| putative membrane protein [Methylococcus capsulatus str. Bath]
          Length = 356

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 112/357 (31%), Gaps = 3/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M +   YI   + +    + L ++ +         +  +      L  +        P  
Sbjct: 1   MNTLNRYIGWEVIKGAAFAALVLLALLNFFTFADELRDLGEGNYGLGSIFLYLTLTSPHS 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +    VL +M  N EL+ +   G SR  ++  VL   I++S+   +    
Sbjct: 61  LYELIPSGALIGGLVVLGNMANNHELVAMQAAGVSRGRIVWAVLRAGIVISLISVVISEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + L A A      S  +  ++ R   ++Y+ + +      L  I I +   
Sbjct: 121 VIPPAERAAQMLKATATRQQVASQTKYGVWIRDG-NVYVNVREIENQERLGDIHIFEISP 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP-ISKDISIMKFKSYTLQTESANSSTIV 239
                     +     DR    L D  + R  P  +  I+  K +       S +   + 
Sbjct: 180 DGRP-ALAMHAARASFDRGIWKLEDIGLTRFDPAGNAAIAEHKEQEDWSSVLSPDMLDVF 238

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +   +   +  L           +        F  R+   L  +   L++I         
Sbjct: 239 IVRPENLSAQDLAKYMAYQTENAQKSLAVEQAFWGRMVNPLITLAMLLLAIPFVFNARRD 298

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               +   I +++ + F +       +  + +    + ++   L  + +      ++
Sbjct: 299 VSSGQRIVIGVTIGLGFYLTNRMVSHLGLVYEVNAPLTMVTPPLVVLFAALAAFRRR 355


>gi|30248806|ref|NP_840876.1| hypothetical protein NE0802 [Nitrosomonas europaea ATCC 19718]
 gi|30180401|emb|CAD84713.1| putative membrane protein [Nitrosomonas europaea ATCC 19718]
          Length = 355

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 108/355 (30%), Gaps = 2/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI   +    +++   ++ +     +L +++ V   T +       +  L+P  
Sbjct: 1   MKICHRYIAWQVLTGMVIATAILLPLFSFFDLLDQLDDVGKGTYTTWDAFLYTVMLMPRR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + PF   + T   L ++  N EL+ +   G S + +    + +  LL       E  
Sbjct: 61  FIQIAPFIALLGTVGALGALAVNLELVAMRVAGLSPLMIGLAPVGIGGLLIASTIALEYF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ +     L A A            ++ R + ++       +         I    +
Sbjct: 121 VAPQFQQQATILRAVALEQGAELGKGLGIWTRNERNILRIGEMLHKGRATDIEVIHFDGE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A    I  D     L+D  +   SP            +       + +T+  
Sbjct: 181 GSMTAHVHAWYADIF-DESLWKLHDVTIRTFSPDRITSRKAHILQWHSFLGPDDIATLTK 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                    L+  +        +  + Y     +++   +  +   L++I          
Sbjct: 240 SPESLTPIELV-KHAEFLRATGQKADAYVMALWRKVGGAIMTIAMILVAIPFIFGSVREG 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              K+    +     +      + I    + NP  + ++   +    +   L+ +
Sbjct: 299 LGGKLILAALMGISIYLFDQIIANIGLVFQLNPIVVSVVPGMVLIAVAAHWLLRR 353


>gi|229513427|ref|ZP_04402891.1| hypothetical protein VCB_001072 [Vibrio cholerae TMA 21]
 gi|229349304|gb|EEO14260.1| hypothetical protein VCB_001072 [Vibrio cholerae TMA 21]
          Length = 366

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 114/347 (32%), Gaps = 19/347 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +     L  +     +   L++  F R  D   +       N  L  +F+       
Sbjct: 122 PWSQDKEAHLMDQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +        +      +   RQ I L DG  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LLN                ++E   R++     V   L++++     A
Sbjct: 242 AERDWEALPTLSLLN----------NADRRAQAELQWRISL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           +  ++ +   +  ++ I    F   S     I ++     I+ L+  
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALSATKSAI-EDGSLPVIIGLWPI 334


>gi|229588597|ref|YP_002870716.1| putative ABC transporter membrane protein [Pseudomonas fluorescens
           SBW25]
 gi|229360463|emb|CAY47320.1| putative ABC transport system, membrane protein [Pseudomonas
           fluorescens SBW25]
          Length = 372

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/365 (13%), Positives = 115/365 (31%), Gaps = 28/365 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   +S       L  I G+ +P  L 
Sbjct: 2   IVFRYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAASGALDPGSLFLIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A  +++ +      + 
Sbjct: 62  LILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMIPAAGVALIVAWLSLSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P+     + +  K      F  LE   F        +    +  +    L G+FI + R 
Sbjct: 122 PQGAMQFQLVLNKQDAMTEFDTLEPGRFQALNDGSRVTYTETLTDDRANLGGVFISEKRL 181

Query: 181 TQTHKIY--------YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
            Q  K            +        + +IL +G  +  SP   D   +K+ +Y +    
Sbjct: 182 GQDKKDRGISVLVADSGRQEVRPDGSRYLILENGYRYDGSPGMADYRAIKYDTYGVMLAR 241

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            + S  V   +      L                   ++   RL+  L   I  L+++  
Sbjct: 242 PDISDEVTDRDAIPTMDLF----------GSNELRSIAQLQWRLSLPLLVFIVTLMAVPL 291

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-----NPYYIPILYLFLFCIS 347
           A    +  ++ +   +  ++ +              +E+           +  +FL    
Sbjct: 292 A---RVNPRQGRFLKLLPAILLYMAYLTMLISAHGAVEKGKLSPTLGLWWVHGIFLAIGL 348

Query: 348 SIFLL 352
            +   
Sbjct: 349 GLLYW 353


>gi|254507443|ref|ZP_05119578.1| putative permease, YjgP/YjgQ family [Vibrio parahaemolyticus 16]
 gi|219549699|gb|EED26689.1| putative permease, YjgP/YjgQ family [Vibrio parahaemolyticus 16]
          Length = 366

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/353 (13%), Positives = 122/353 (34%), Gaps = 19/353 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ +      ++ +   +       ++L I G  IP +  
Sbjct: 2   IIVRYLIRETLKSQLAIFFVLLLVFVSQTFIKVLGDATDGDIPARLILAIVGLNIPQMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  + LA + ++    +   + 
Sbjct: 62  LMLPMSLYIGILLTFGRLYSESEITVMNATGMGSKFLIRAAMSLAFITTVLAAFNTLYLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +    QL  +     +   L+   F R  D   +       +N L  +F+   R   
Sbjct: 122 PWSQEKEAQLIEQVAAENSVDLLKAGQFQRTPDGSSVVFIDEIRDNKLNNVFVAQVRPRD 181

Query: 183 --THKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                + ++ SG +       Q I+++DG  +   P   D  + +F+ Y+          
Sbjct: 182 AILPSVMFSNSGEVREHDDGRQMIVMHDGTRYEGIPTRLDYMVTEFEHYSGLIGQREVQA 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       L+     +           ++E   R++     V   L++++     A
Sbjct: 242 KRRSWGAVPTLDLIESTDLSA----------KAELQWRISL---FVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
           +  ++ +   +  ++   F  F   S     I ++     ++ ++    + + 
Sbjct: 289 VNPRQGRFAKMGPAILAYFVYFISMSTTKSAI-EDGNIPAVIGMWPINFALLV 340


>gi|16763280|ref|NP_458897.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29144759|ref|NP_808101.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213162831|ref|ZP_03348541.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213427634|ref|ZP_03360384.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213618568|ref|ZP_03372394.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213650367|ref|ZP_03380420.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289824527|ref|ZP_06544086.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25513067|pir||AG1061 probable inner membrane protein STY4818 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505588|emb|CAD06940.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140398|gb|AAO71961.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 360

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 113/354 (31%), Gaps = 2/354 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++                +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVPKDIQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     +   + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYAFNDQRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQFNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  IS    F V       +  +   P  +  L            LM++K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 359


>gi|332086995|gb|EGI92129.1| hypothetical protein SB359474_4824 [Shigella boydii 3594-74]
          Length = 360

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 115/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  +  
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQT 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                 +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 127 LGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 359


>gi|268592782|ref|ZP_06127003.1| membrane protein, YjgP/YjgQ family [Providencia rettgeri DSM 1131]
 gi|291311563|gb|EFE52016.1| membrane protein, YjgP/YjgQ family [Providencia rettgeri DSM 1131]
          Length = 358

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 116/355 (32%), Gaps = 2/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I  S L++   +V +A +I+ ++++  V     +       +   +P  + +
Sbjct: 5   LDRYIGRTILNSILVTLFLLVSLAGIIKFVEQLRKVGDGDYTALSAGVFTLLTVPKDIDI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++   +EL+++  +G +R+ +   V+  A+ L I        I P
Sbjct: 65  FFPMAALLGALMGLGALASRSELVVMQASGFTRLQIALSVMKTAVPLVIVAMFIGEWIAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                 +   A+  +  +    +E ++ +  +D        N  +             + 
Sbjct: 125 AGEQWARNYRAEKIVGNSLVVTDEGMWAKDANDFIHIQRINNATSIQDVSIYRFDDQRKL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTIVLKA 242
             + +A +G  D   Q  +L+  +    S   K     +    +           + L A
Sbjct: 185 KSVMFAANGEYDSTNQLWVLSQVDESILSSEKKITGSQRLTVDWKTNLTPEKLGIVSLNA 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++  L     +      ++   Y     K++   L   +  L+++            
Sbjct: 245 DSLSIRGLYQ-YVSYLKESGQVAAVYELSMWKKILAPLSAAVMMLMAVSFIFGPLRTVPM 303

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I     F V          +   P  I      +  +     L++K+K
Sbjct: 304 GVRVISGIVGGFLFYVLNQGFGNWSLVYSVPPIIAAALPSVLFLIVSITLLVKRK 358


>gi|15642496|ref|NP_232129.1| hypothetical protein VC2500 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|153215710|ref|ZP_01950091.1| membrane protein, putative [Vibrio cholerae 1587]
 gi|153822404|ref|ZP_01975071.1| membrane protein, putative [Vibrio cholerae B33]
 gi|153831206|ref|ZP_01983873.1| putative membrane protein [Vibrio cholerae 623-39]
 gi|227082619|ref|YP_002811170.1| hypothetical protein VCM66_2422 [Vibrio cholerae M66-2]
 gi|229507442|ref|ZP_04396947.1| hypothetical protein VCF_002671 [Vibrio cholerae BX 330286]
 gi|229509633|ref|ZP_04399114.1| hypothetical protein VCE_001033 [Vibrio cholerae B33]
 gi|229516758|ref|ZP_04406204.1| hypothetical protein VCC_000775 [Vibrio cholerae RC9]
 gi|229521565|ref|ZP_04410983.1| hypothetical protein VIF_002101 [Vibrio cholerae TM 11079-80]
 gi|229606948|ref|YP_002877596.1| hypothetical protein VCD_001857 [Vibrio cholerae MJ-1236]
 gi|254291418|ref|ZP_04962210.1| membrane protein, putative [Vibrio cholerae AM-19226]
 gi|254851045|ref|ZP_05240395.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744521|ref|ZP_05418473.1| putative membrane protein [Vibrio cholera CIRS 101]
 gi|297581347|ref|ZP_06943270.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|298500669|ref|ZP_07010473.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9657081|gb|AAF95642.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|124114628|gb|EAY33448.1| membrane protein, putative [Vibrio cholerae 1587]
 gi|126520047|gb|EAZ77270.1| membrane protein, putative [Vibrio cholerae B33]
 gi|148873313|gb|EDL71448.1| putative membrane protein [Vibrio cholerae 623-39]
 gi|150422608|gb|EDN14563.1| membrane protein, putative [Vibrio cholerae AM-19226]
 gi|227010507|gb|ACP06719.1| putative membrane protein [Vibrio cholerae M66-2]
 gi|229341159|gb|EEO06163.1| hypothetical protein VIF_002101 [Vibrio cholerae TM 11079-80]
 gi|229345821|gb|EEO10793.1| hypothetical protein VCC_000775 [Vibrio cholerae RC9]
 gi|229353107|gb|EEO18046.1| hypothetical protein VCE_001033 [Vibrio cholerae B33]
 gi|229354947|gb|EEO19868.1| hypothetical protein VCF_002671 [Vibrio cholerae BX 330286]
 gi|229369603|gb|ACQ60026.1| hypothetical protein VCD_001857 [Vibrio cholerae MJ-1236]
 gi|254846750|gb|EET25164.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255738046|gb|EET93439.1| putative membrane protein [Vibrio cholera CIRS 101]
 gi|297534185|gb|EFH73023.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297540838|gb|EFH76895.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 366

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 114/347 (32%), Gaps = 19/347 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +     L  +     +   L++  F R  D   +       N  L  +F+       
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +        +      +   RQ I L DG  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LLN                ++E   R++     V   L++++     A
Sbjct: 242 AERDWEALPTLSLLN----------NADRRAQAELQWRISL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           +  ++ +   +  ++ I    F   S     I ++     I+ L+  
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALSATKSAI-EDGSLPVIIGLWPI 334


>gi|89075942|ref|ZP_01162317.1| putative permease [Photobacterium sp. SKA34]
 gi|89048383|gb|EAR53961.1| putative permease [Photobacterium sp. SKA34]
          Length = 338

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/335 (12%), Positives = 112/335 (33%), Gaps = 1/335 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +F ++   +V ++ +I+ ++++  V   +  L   L      +P  +
Sbjct: 3   KILDWYIGRTIIATFSLTLSTLVGLSAIIKYVEQLRKVGQGSYDLLKALYFVLLSMPQDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +    L  A+ + I + +     
Sbjct: 63  IMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSTLKTAVPMMIVVVLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   ++  +      +    +  ++ + D+        ++ N              
Sbjct: 123 APQAQKMAREYRSAWIYGGSVIAAQSGVWAKNDNSFIYMGRVHDLNKVDVVNIWQFDNKG 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           Q   +  A+  S D      + +              S +  K +         + + +K
Sbjct: 183 QLEDVTSAKRASYDKATGWTMHDVTITDMIGSSQLTNSQIASKHWETTLTPDKLAVVTVK 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +   N      +    Y   F ++  Q +   +  L+++           
Sbjct: 243 PEELSLSGLYH-YVNYLKETKQDASRYDLAFWRKALQPISIAVMMLLALSFVFGPLRSVT 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                   +    +F +       +  + + P  +
Sbjct: 302 MGARVLSGVIFGFAFYISDQVFGPMILVYRLPPIL 336


>gi|85060085|ref|YP_455787.1| putative transport protein [Sodalis glossinidius str. 'morsitans']
 gi|84780605|dbj|BAE75382.1| putative transport protein [Sodalis glossinidius str. 'morsitans']
          Length = 356

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 113/352 (32%), Gaps = 2/352 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ ++++  V     S       +   IP  + +
Sbjct: 5   LDRYIGKTIFNTIMMTLFMLVSLSGIIKFVEQLRKVGQGGYSALGAGLFTLLSIPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L S+   +EL+++  +G SR+ +   V+  AI L +        + P
Sbjct: 65  FFPMSALLGALLGLGSLATRSELVVMQASGFSRMQVAGSVMKTAIPLVLLTMAIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                +        +        +N  +  D + +I I +   ++ L G+ I        
Sbjct: 125 AG-EQMAYNYRTQMIYGGSMLSTQNGLWAKDGNDFIFIERVVGSDELAGVNIYHFDKADR 183

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            +     + +   +    +    E    +             +           + L+ N
Sbjct: 184 LQSLRYAATATFSNGSWKLSQVDESDLTNDKQITGRQTLNGEWKTNLTPDKLGVVALEPN 243

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++S L N   N      +    Y+     ++       +  L+++             
Sbjct: 244 SLSISGLYN-YVNYLKQSGQESNRYQLNMWSKIFSPFSVAVMMLMALSFIFGPLRSVPMG 302

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               I IS    F V       +  +   P     L   +  +    +++++
Sbjct: 303 VRVVIGISFGFLFYVLDQIFGPLSLVYNMPPVFGALLPSMAFLIISIVMLLR 354


>gi|90408708|ref|ZP_01216857.1| putative permease [Psychromonas sp. CNPT3]
 gi|90310190|gb|EAS38326.1| putative permease [Psychromonas sp. CNPT3]
          Length = 365

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 125/359 (34%), Gaps = 18/359 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++    +S       ++ I    + +  +    +   + +++L +    +PT+  
Sbjct: 2   ILRRYLMLETFKSQFGILFVLLLIFVSQKFIAILEQAINGVIAPDLVLTLLYLNLPTLGT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        ++  +E++ + + G S  +++K  L L+     F   +   + 
Sbjct: 62  LMLPISFYLAILFAHGRLHSESEMVAMTSCGYSPNSVLKATLLLSFFTFAFASFNSLYLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI---VDSR 179
           P   + +  +  KA+     + L E  F +  ++  +   +                 S 
Sbjct: 122 PSAENEMIAVIEKAESDAGVATLIEGRFHKSSENGGVVYVEKYHEGQKLERIFASYWPSD 181

Query: 180 DTQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           + +   +  A  GS+    D   + L DG+ +  +    +    +F SY +   +    +
Sbjct: 182 ENKAPSVITALHGSVQEKEDGTWLTLEDGQSYTGNVGEHEFDSSRFSSYEVHIANREIRS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +    S LL           +  +  R+E   R+   L  ++   +++  A    
Sbjct: 242 RSRGVSALPTSILLT----------QTDDKSRAELQWRMAIPLSILLLTFMAVPLA---K 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +  +L++    F   S     IE+    I  ++          + +  K
Sbjct: 289 VNPRQGRYAKLMPALALYLTYFLLLSTSKSLIEEGTLPILSIWGVQIVFLLGGVFLHLK 347


>gi|257058053|ref|YP_003135941.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8802]
 gi|256588219|gb|ACU99105.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8802]
          Length = 395

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/374 (13%), Positives = 132/374 (35%), Gaps = 22/374 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPT 59
           +   + YI   +   F+     +  +   I  L  + N V  S   L   L+I    +P 
Sbjct: 22  LSLMDRYIGGQLITPFIFGVGLVSSLGVAIGYLSDLGNKVVDSNLPLIKALEILLLKVPE 81

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                 P    + T      ++ ++EL+ +   G S   LI P L L++++S   F+   
Sbjct: 82  FTAYALPISVMLTTLLTYGRLSSDSELIALRACGVSLSRLIAPALALSLVVSGITFVFNE 141

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL------------YIKISKYNPN 167
           ++ P        +  K        + ++++F+   +++            ++  ++    
Sbjct: 142 LVVPTANYQATSILVKYLNEEHRFWQQKDIFYPDYEEISLPNGETIKRLKHLFYAEEFDG 201

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             ++ + I++      +KI  + S + + ++      +G +++ +P +       FK   
Sbjct: 202 ENMKALTILEWIGDSLNKIVISDSATWNANQNTWDFFNGNIYKIAPDASYKDTFGFKHRQ 261

Query: 228 LQTESANSSTIVL--KANDQNLSFLLNPNPNNPNYR-PELLETYRSEFHKRLTQWLFPVI 284
           L    A     +      + N+                + L T++    ++++     V+
Sbjct: 262 LPLSKAPFEFALQGRNPYEMNIIQAQEYTKLLKMIGDQKNLRTFQVRIQQKMSFPFICVV 321

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL- 343
           FGLI  V   +   + +            I    ++   ++I  +       P +  +L 
Sbjct: 322 FGLIGSVLGARPQQMSRSTSFGLS----VIIIFTYYVLGFLIGSLGLVGAISPFMAAWLP 377

Query: 344 -FCISSIFLLMIKK 356
            F   ++   ++ +
Sbjct: 378 NFIGLAVGGWLLYR 391


>gi|166364704|ref|YP_001656977.1| permease [Microcystis aeruginosa NIES-843]
 gi|166087077|dbj|BAG01785.1| permease [Microcystis aeruginosa NIES-843]
          Length = 387

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/364 (9%), Positives = 120/364 (32%), Gaps = 21/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + Y++  +   FL S      +   +  +    N V  +   L   L+I    +P  +
Sbjct: 16  LIDRYLISQLLPPFLFSVGLFASLGVAIGNLSDLANQVVDANLPLASALEILLLKVPEFV 75

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    + T      ++ ++E + + + G +   L  P   L++++++  F+    +
Sbjct: 76  TYSLPVSLLLATLITYGRLSSDSETVALQSCGVTLYRLFIPTFCLSLIVTVVTFLLNEYV 135

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI------------KISKYNPNNT 169
            P       ++  +        +  ++ ++   +   +              ++      
Sbjct: 136 VPNANYRATEILVQKINKEASFWKNKDFYYPDYEIKTLENGTINRNLISLFYAEQFDGEK 195

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISI---MKFKSY 226
           ++ + ++     + ++I  A S   +         +G ++  +P +         K +  
Sbjct: 196 MKTVTVIRWLKQELNQIIIADSARWNAVDNVWDFFNGIIYELTPPNASYRQVIPFKAEKI 255

Query: 227 TLQTESANSSTIVLKANDQNLSFLLNP-NPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
            L   + + +       + N+   +        +   + +  ++    +++      ++F
Sbjct: 256 ALSRSAFDFARQSRDPYEMNIPQAIEYVQLLKLSGDDKRVRFFQVRIQQKIAFPFVCIVF 315

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
             I          + +        +S++I F +++  ++++  +       P L  +L  
Sbjct: 316 ATIGCALGSLPQRISRG---TSFGLSVAIVF-LYYLLNFLVGSLGLTATLSPFLAAWLPN 371

Query: 346 ISSI 349
               
Sbjct: 372 FFGF 375


>gi|156975868|ref|YP_001446775.1| hypothetical protein VIBHAR_03634 [Vibrio harveyi ATCC BAA-1116]
 gi|156527462|gb|ABU72548.1| hypothetical protein VIBHAR_03634 [Vibrio harveyi ATCC BAA-1116]
          Length = 366

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 120/357 (33%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + +  +   S       ++  + G  +P +  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFLSQKFISVLAKASDGDIPAGLIFSVVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     L++  L LAI+ S     +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALCLAIITSGVAAFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +  ++QL  + +   +   L++  F    D   +       ++TL  +F+   R   
Sbjct: 122 PWSQDRVEQLYDQVEAENSVDLLQKGQFQGTPDGSSVVFIDDIKDSTLSNVFVAQMRPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +           +   +   RQ I +++G  +   P   +  + KF  Y           
Sbjct: 182 SILPSVMFSSSGEVKELADGRQIITMHEGTRYEGVPTRVEYMVTKFDQYEGVIGQREVKQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       L+                 ++E   R++     V   L++++     A
Sbjct: 242 KGRDWEAYPTLDLI----------GHPDPEAQAELQWRISL---FVCIPLLTMLVIPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +  ++ +   +  ++ I    F   S     +E+   +   + ++      + + ++
Sbjct: 289 VNPRQGRFAKMGPAILIYLAYFLAISATKSALEE-GTFPAAIGMWPINAMLLIVAIL 344


>gi|332879242|ref|ZP_08446939.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682662|gb|EGJ55562.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 368

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 118/364 (32%), Gaps = 9/364 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
              ++Y+++    ++  S   I+ IA V    + I+  +++      I+ +     +P  
Sbjct: 9   SKLDMYLIKKFLGTYFFSIALIISIAVVFDFNENIDKFTTNHAPWKGIIFEYYANFVPYF 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ +   G S   L++P +  A ++++  F+    
Sbjct: 69  SNLFSPLFVFISVIFFTSKLAENSEIIAMMAAGMSFKRLMRPYMISAAIIAVMTFLLGAY 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK   T        +      + +          +           T     +    +
Sbjct: 129 VIPKGSVTRLNFENIYKKKKKTEFAQNVQLQVDTGVIAFIEHFDGRTKTGYHFSLDKFVN 188

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +      A S S D    +R    +N+  +     + + IS        +  E ++   
Sbjct: 189 KKLVSHLTAASVSYDTLSDERYHWRINNYTLRELKGMREYISHGSRIDSIIAMEPSDFLL 248

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +        L              ++ +  E+ KR        I  +I +      A
Sbjct: 249 TRNQQETLTSPELKEYIVKQRARGSGNVKPFEVEYQKRFATPFASFILTIIGLSL---SA 305

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKK 356
             R+      + I L++S   +  F  +      N  + P L  +L   I +     + K
Sbjct: 306 RKRKGGMGLYLGIGLALS-ASYILFQTVSSTFAINADWPPALAAWLPNIIFAFIAFFLYK 364

Query: 357 KYTK 360
           K  +
Sbjct: 365 KAPQ 368


>gi|261492351|ref|ZP_05988913.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496137|ref|ZP_05992545.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308239|gb|EEY09534.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312034|gb|EEY13175.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 365

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/360 (12%), Positives = 118/360 (32%), Gaps = 6/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI + I  +  ++   ++ +  +I+ ++    V   +         +   IP  
Sbjct: 6   MNILERYIGKTILSAIFLTLFMLIGLGAIIKFVEEFRDVGRGSYDGLKAAYYTFLTIPRD 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L ++   +EL+++  +G SR  +   V+  A+ L +F  I    
Sbjct: 66  IETFFPIAALLGSLLGLGNLASRSELVVMQASGFSRFRIGLAVMKTALPLVLFTMIIGEW 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI--KISKYNPNNTLQGIFIVDS 178
             P+     + + + AQ   +    ++  + +  +       I      + +      + 
Sbjct: 126 GVPQTEQFARNMRSIAQSGGSMLATKDGFWAKDGNSFIYINHIKNEKSLDNVLIYQFGEG 185

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           ++ +  +       +   D +  +L+  E           +    + +      +    +
Sbjct: 186 QNKRELQSVLKAGTANYSDEKGWVLSKVEKSTVGENQIQQAKQPDQVWQTSLTPSKLGIV 245

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            LK    ++S L +          +  + +   F +++ Q +   +  L++I        
Sbjct: 246 SLKPESLSISGLAD-YVGFLKDTGQDPKRFEITFWRKVFQPISMAVMMLLAISFIFGPL- 303

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI-PILYLFLFCISSIFLLMIKKK 357
            R       I I +   F  +       +      +   P+  L    +  I +  +  K
Sbjct: 304 -RSSTMGAKIVIGIVAGFMFYVANIVFGNLSLIATWLPVPVGALIPSLLCLIIVWWLLSK 362


>gi|312884632|ref|ZP_07744335.1| hypothetical protein VIBC2010_15702 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367724|gb|EFP95273.1| hypothetical protein VIBC2010_15702 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 356

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 123/357 (34%), Gaps = 3/357 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI + +  +  +     V ++ +I+ ++++  V   T  L   L      IP  +
Sbjct: 3   KILDLYIGKTLIATTSLVLATFVGLSAIIKYVEQVRKVGEGTYDLIQALFFVILSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + + +     
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLNIGMSVLKTAVPLMVLVTLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +       +           +  D + +I I+K + +          +   
Sbjct: 123 APQAQ-KMARDLRTFATSGGALMSVRTGVWARDANDFIFINKVDDDKIYGLNMWRFNDQK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           Q  +  +A+      +   ++ +      +  +  +   +K   +         + + +K
Sbjct: 182 QLSQTLFAKEVDYVSENIWVMKDAEVTDMEGEVKLEKHFLKEYEWKTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +L  L     +      +    Y   F +++TQ L   +  L+++           
Sbjct: 242 PEELSLGGLY-EYVSYLKSSEQDPSRYELAFWRKVTQPLSIGVMMLMALSFIFGPLRSVT 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                   +    +F +   F   +  +   P     + +       I + ++++K 
Sbjct: 301 MSARILSGVIAGFTFYISSEFFGPLSLVYNIPPIFGAI-MPSCVFLLIAIFLLQRKL 356


>gi|117619151|ref|YP_858152.1| putative permease [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117560558|gb|ABK37506.1| putative permease [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 356

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 114/355 (32%), Gaps = 2/355 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YI R I  S L+  L +V +A +I+ ++++  V      +   L      +P    
Sbjct: 4   ILDRYIGRVIFMSVLLCELTLVGLAALIKYVEQLKSVGEGNYDMLSALYYVLLSMPKEAV 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +     L  +  ++EL+++   G S+I+++   L  AI L I + +    + 
Sbjct: 64  LFFPLAALLGGLIGLGQLATSSELVVMQAAGRSKISIVMAALKTAIPLMILVGLMGEYVA 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     +        L+     +     +  D + ++ I+    +  L GI +      +
Sbjct: 124 PIA-KRMADDIKAGALSEGRLTVSAYGVWARDGNNFVNINGVRNDGALTGITLYRFTPER 182

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                      +      ++          P            ++ +        + +  
Sbjct: 183 KLIDILQAQEGVFEQHHWLLKQVQVTRFDDPRQIMSETQPQMEWSSELTPKQLGVVSIDP 242

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
            +  ++ LL+      +   +    Y+ E  ++L   L  V   L++             
Sbjct: 243 ENLPVAGLLD-YIGYLDANKQDAGRYKLEMWRKLLSPLSVVAMILLASSFIFGPLRSVSM 301

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                + I    +  V       I  +   P  +  +   L      F ++ +K+
Sbjct: 302 GARMLMGIMTGFAVYVSDRVFGPISLVYAVPPILAAIAPSLLFGGISFYILSRKQ 356


>gi|28899417|ref|NP_799022.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839665|ref|ZP_01992332.1| inner membrane protein YjgP [Vibrio parahaemolyticus AQ3810]
 gi|260879348|ref|ZP_05891703.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|260895693|ref|ZP_05904189.1| conserved inner membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|260900265|ref|ZP_05908660.1| conserved inner membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|28807653|dbj|BAC60906.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746808|gb|EDM57796.1| inner membrane protein YjgP [Vibrio parahaemolyticus AQ3810]
 gi|308087429|gb|EFO37124.1| conserved inner membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|308093070|gb|EFO42765.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|308107549|gb|EFO45089.1| conserved inner membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|328471446|gb|EGF42341.1| putative permease [Vibrio parahaemolyticus 10329]
          Length = 366

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/356 (12%), Positives = 118/356 (33%), Gaps = 19/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + +  +   S       ++  I G  +P +  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFVSQKFISVLADASDGDIPAGLIFSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     L++  L+LA++ S     +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALYLALITSGVAAFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +  ++ L  +     +   L++  F    D   +       ++TL  +F+   R   
Sbjct: 122 PWSQDRVEHLYEQVAAENSVDLLKKGQFQGTPDGSSVVFIDDIKDSTLSNVFVAQMRPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +           +   +   RQ I + +G  +   P   +  I KF  Y           
Sbjct: 182 SVLPSVMFSSSGEVKELSDGRQVITMQEGTRYEGVPTRVEYMITKFDEYEGVIGQREVKQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                     + L+                 ++E   R++ +   V   L++++     A
Sbjct: 242 KGRDWEAYPTADLI----------GHPDPEAQAELQWRISLF---VCIPLLTMLVIPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLL 352
           +  ++ +   +  ++ I    F   S     +E       I ++     +  + ++
Sbjct: 289 VNPRQGRFAKMGPAILIYLAYFLAISATKSALEDGAIPAAIGMWPINAMLLIVAIM 344


>gi|218245029|ref|YP_002370400.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8801]
 gi|218165507|gb|ACK64244.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8801]
          Length = 395

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/374 (13%), Positives = 131/374 (35%), Gaps = 22/374 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPT 59
           +   + YI   +   F+     +  +   I  L  + N V  S   L   L+I    +P 
Sbjct: 22  LSLMDRYIGGQLITPFIFGVGLVSSLGVAIGYLSDLGNKVVDSNLPLIKALEILLLKVPE 81

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                 P    + T      ++ ++EL+ +   G S   LI P L L++++S   F+   
Sbjct: 82  FTAYALPISVMLTTLLTYGRLSSDSELIALRACGVSLSRLIAPALALSLVVSGITFVFNE 141

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL------------YIKISKYNPN 167
           ++ P        +  K        + ++++F+   +++            ++  ++    
Sbjct: 142 LVVPTANYQATSILVKYLNEEHRFWQQKDIFYPDYEEISLPNGETIKRLKHLFYAEEFDG 201

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             ++ + I++      +KI  + S + + ++      +G +++ +P +       FK   
Sbjct: 202 ENMKALTILEWIGDSLNKIVISDSATWNANQNTWDFFNGNIYKIAPDASYKDTFGFKHRQ 261

Query: 228 LQTESANSSTIVL--KANDQNLSFLLNPNPNNPNYR-PELLETYRSEFHKRLTQWLFPVI 284
                A     +      + N+                + L T++    ++++     V+
Sbjct: 262 FPLSKAPFEFALQGRNPYEMNIIQAQEYTKLLKMIGDQKNLRTFQVRIQQKMSFPFICVV 321

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL- 343
           FGLI  V   +   + +            I    ++   ++I  +       P +  +L 
Sbjct: 322 FGLIGSVLGARPQQMSRSTSFGLS----VIIIFTYYVLGFLIGSLGLVGAISPFMAAWLP 377

Query: 344 -FCISSIFLLMIKK 356
            F   ++   ++ +
Sbjct: 378 NFIGLAVGGWLLYR 391


>gi|301028101|ref|ZP_07191379.1| putative inner membrane protein [Escherichia coli MS 196-1]
 gi|299878818|gb|EFI87029.1| putative inner membrane protein [Escherichia coli MS 196-1]
          Length = 360

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 117/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVVMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 359


>gi|325297714|ref|YP_004257631.1| permease YjgP/YjgQ family protein [Bacteroides salanitronis DSM
           18170]
 gi|324317267|gb|ADY35158.1| permease YjgP/YjgQ family protein [Bacteroides salanitronis DSM
           18170]
          Length = 371

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 124/363 (34%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI+     ++  +   I+ I+ V  I + I+   ++   L  I+       IP 
Sbjct: 13  LKRLDRYIIVKFLGTYFFAIALIISISVVFDINENIDRFINNKAPLEAIVFDYYLNFIPY 72

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   L+ P +  A ++S   F+   
Sbjct: 73  YTNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRLMVPYMISAAIISAVTFMLGT 132

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + PK   T  +   K +   +  Y            +       N N T     +    
Sbjct: 133 EVIPKGSVTRLKFEEKYKKKKSADYARNIQLEVDSGVVAYMERYENYNKTGYRFSLDKFE 192

Query: 180 DTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           D +      A+  + D       I+ D  +     + + I+  +     ++ E  +    
Sbjct: 193 DHKLVSHLTARRITYDTASYHKWIIRDYMIREMRGMKEVITRGERIDSIIKMEPQDFLIT 252

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        L              ++ +  E+H+R+       I   I +      + 
Sbjct: 253 RGQQETMTSPQLREYIQKQKQRGFANIKEFEVEYHRRIAMSFAAFILTAIGLSL---SSR 309

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL-LMIKKK 357
             +      + I L++SF  +  F  I      N    P L +++  I  +F+ + +  K
Sbjct: 310 KVKGGMGLHLGIGLALSFS-YILFQTISATFAINGNMPPALAIWIPNILYLFIAIYLYHK 368

Query: 358 YTK 360
             K
Sbjct: 369 APK 371


>gi|258625833|ref|ZP_05720712.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258582071|gb|EEW06941.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 366

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 117/357 (32%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +    QL  +     +   L++  F R  D   +       N  L  +F+       
Sbjct: 122 PWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLHNVFVAQLAPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +               +   RQ I L +G  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSNSGDVKELSDGRQIITLYNGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LL                 ++E   RL+     V   L++++     A
Sbjct: 242 SDRDWEALPTLSLL----------KNSDLQAQAELQWRLSL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +  ++ +   +  ++ I    F   S     I ++     I+ L+    + +   ++
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALSATKSAI-EDGSLPVIIGLWPVNAALLIAALV 344


>gi|82546485|ref|YP_410432.1| hypothetical protein SBO_4178 [Shigella boydii Sb227]
 gi|81247896|gb|ABB68604.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 361

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 115/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  +  
Sbjct: 8   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQT 67

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 68  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 127

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                 +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 128 LGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRL 187

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 188 QSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 247

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 248 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 306

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 307 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 360


>gi|94266927|ref|ZP_01290580.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
 gi|93452379|gb|EAT02998.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
          Length = 400

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/348 (16%), Positives = 125/348 (35%), Gaps = 8/348 (2%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFA 70
            +   F  + L I  + ++ +++  ++ + S    L   L++  Y+ P++L    P    
Sbjct: 15  EMLAPFFAALLVINAVLFLGRLVPMLDEIFSLGVGLGDFLRVVAYITPSMLLFSLPMAAM 74

Query: 71  METTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIK 130
           M      T +  + E++ +  +G S   ++ PV+F  +L  +    +  ++ P+  + + 
Sbjct: 75  MAVIIAFTRLAGDLEIMALKASGISLPRMLPPVVFFGLLTGLMTLATATVLIPRGMTAMD 134

Query: 131 QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           QL            + E  F     D+ + +   +P+     G+++ D RD        A
Sbjct: 135 QLMIHLAKEHIEEGIREKTFSEGLGDVVLYVDDISPDQRFWHGVYLSDLRDKDNPLTISA 194

Query: 190 QSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ 245
           Q G++  D  A      L+DG +HR          + FK Y L+    + +      +  
Sbjct: 195 QGGNLRADPAAGRVVLSLSDGSLHR--SAGAKSQTIFFKHYKLEIPLDSPTLGPPGRSSM 252

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
             + L           P     Y  E+H+RL   +   +  ++ +  +      R    +
Sbjct: 253 TQAQLRQRATELGPEHPRQY-RYIGEYHQRLALPVGCFLLAMLGLSLSQMGQGSRLALGV 311

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                S    + +      +             L   LF ++  +LL 
Sbjct: 312 PLGLASFVAYYVLLTAAKSLGEAGTLPMALAIWLPNLLFLLAGGYLLW 359


>gi|226227979|ref|YP_002762085.1| hypothetical protein GAU_2573 [Gemmatimonas aurantiaca T-27]
 gi|226091170|dbj|BAH39615.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 362

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 94/356 (26%), Gaps = 6/356 (1%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI     R F ++ L    + +VI ++  +   +        +     Y IP  L M
Sbjct: 9   LDRYIATEFTRIFGVTILGFPVLVFVIDLVDNLRKYTERKLPAKAVALSYFYWIPDTLFM 68

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           V P      T   + +  R +E+     +G S    I P+L +A L          I  P
Sbjct: 69  VLPAAVLFATVFSIGTFTRYSEITAAKASGISFYRFIAPILVMATLALGLDLAFGEIAPP 128

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                +  L   +       Y       R        ++  +         I      + 
Sbjct: 129 ANAIRLDLLEGTSSSRANDRYNFAFASDRGRIYRIYTLNVRDKAVDNIE--IEARGSDKK 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK---SYTLQTESANSSTIVL 240
             +  A   +   D +     D  V    P         F            A   T   
Sbjct: 187 PGMVVAARRAKWNDARRDWRLDSGVVHIIPDRTRDIAFSFDSLIDRDFHETPAELRTTER 246

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             ++   + L              + T + E   ++   +  +I  L     A       
Sbjct: 247 DPSEMRFADLTR-FITVLERSGADVNTLKVERMLKIAIPVTCLIIALFGAPLATSSQRGG 305

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               I     +  +   +      I  K    P     +   +  + +I LL   +
Sbjct: 306 AAYGIAVSLATTVLFLLLIQLTKAIGGKGIVEPELAAWIPNAVVGLFAIVLLSRVR 361


>gi|152978627|ref|YP_001344256.1| permease YjgP/YjgQ family protein [Actinobacillus succinogenes
           130Z]
 gi|150840350|gb|ABR74321.1| permease YjgP/YjgQ family protein [Actinobacillus succinogenes
           130Z]
          Length = 368

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 124/357 (34%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R + +S       ++ I +  Q+++ +   ++     +++  + G  +P +  
Sbjct: 2   ILTRYLTREVLKSQAAVLFILLLIFFSQQLVRVLGSAANGNVPADLVFSLLGLGMPAMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L++ VL L+   +I    +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVRVVLLLSFFTAILAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+     + L    F   +++ ++       +N +  +++  +R   
Sbjct: 122 PWAIQKQTEIVEDAKANPRMAALSAGQFMVSNNNDFVLFINNIKDNQINDVYLFQTRQKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G    +    Q + L + +    S    D  I +F  Y       ++  
Sbjct: 182 NAKPSVVTAEKGELKSLPNGDQILSLANSQRFEGSAALPDFRITRFDEYQAYLGHQSAGA 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           I  +A   + + L                  ++E H RLT  L   +  LI++       
Sbjct: 242 IENEAEVLDFNTL----------TQLNTPAAKTELHWRLTLILAVPLMALIAV---PMSR 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKI-EQNPYYIPILYLFLFCISSIFLLM 353
           +  ++ +   +  +L +    F   S +              + L       + +++
Sbjct: 289 VNPRQGRFAKMLPALLLYLIYFLAQSSLKSAGTAGKLDAGIFMPLVNIVFLLLGIVL 345


>gi|229524483|ref|ZP_04413888.1| hypothetical protein VCA_002078 [Vibrio cholerae bv. albensis
           VL426]
 gi|229338064|gb|EEO03081.1| hypothetical protein VCA_002078 [Vibrio cholerae bv. albensis
           VL426]
          Length = 366

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 114/347 (32%), Gaps = 19/347 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLAEASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +     L  +     +   L++  F R  D   +       N  L  +F+       
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +        +      +   RQ I L DG  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LLN                ++E   R++     V   L++++     A
Sbjct: 242 AERDWEALPTLSLLN----------NADRRAQAELQWRISL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           +  ++ +   +  ++ I    F   S     I ++     I+ L+  
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALSATKSAI-EDGSLPVIIGLWPI 334


>gi|307611507|emb|CBX01181.1| hypothetical protein LPW_28801 [Legionella pneumophila 130b]
          Length = 359

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/369 (12%), Positives = 120/369 (32%), Gaps = 22/369 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + +  + +     +V I    Q +Q +N  +S +    +++K+    +P ++ 
Sbjct: 2   IIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMG 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        +   +E+ ++   G     L+K    +A ++ + + I      
Sbjct: 62  LLLPLGFYIALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVMIWAS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +L     +      +    F  ++    I   +    +  Q   I  ++ + 
Sbjct: 122 PVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHSV 181

Query: 183 THKIYY---------AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
                              +     + I+L +G+ ++  P   D  I +F SY  +  + 
Sbjct: 182 QDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPNP 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
               +   A       L   N ++            +E   R++  L  +   L+++   
Sbjct: 242 TV-VMHDDARTAKTRDLWPLNNHDLKKA--------AELQWRISIPLMVLTLTLVAVPL- 291

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLL 352
               +  +  K   +  ++ I              I      +   ++     ++ + +L
Sbjct: 292 --SRVSPRSGKYSKLLPAIIIYIFYANFMFVSRDAIATGKIPWWIGMWWVHVAVAILGIL 349

Query: 353 MIKKKYTKI 361
            I +   K+
Sbjct: 350 FIWRNQVKL 358


>gi|289209273|ref|YP_003461339.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. K90mix]
 gi|288944904|gb|ADC72603.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. K90mix]
          Length = 357

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 107/355 (30%), Gaps = 5/355 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y++R +     ++ + +V +  V  ++  +    +    +   +      +P  +
Sbjct: 3   TVLGRYVIRQVLIGTTLAVVLLVALDAVFAMIDELRDTGAGNYGVTEAMLYVALTLPRRM 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L ++  N+EL  +   G +    I  VL   +++ + + I     
Sbjct: 63  YEMLPPAALVGGLLWLGNLAANSELTAMRAAGMTLGRFIVWVLQAGLVVVMVMLIIGEFF 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   +     + KA        +     +  D    I        N L G+ I++    
Sbjct: 123 APASETR--AQALKASAFDEEISVGSMGLWARDGQRMIHAESVLAGNQLVGVRIIEFTGD 180

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +       ++           L D E    S           ++            +V++
Sbjct: 181 REPSWIT-RAARARFVDGDWRLEDVERSLLSHDRVVAEHRAEETIDRLIAPEYFDVLVVE 239

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            +      L +   +           Y   F +R T      +  L++I           
Sbjct: 240 PSQMAALDL-SRYIDYLRENQLDAAPYEVAFWQRFTLPASTFVMLLLAIPFLFGSQREGG 298

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             +   I I++ +SF +       +  +   P  +    L +    +I L  +++
Sbjct: 299 AGQRLFIGIAIGVSFVIVMRAITHLGLVYNLPPLLAAC-LPVLLFLAIALFALRR 352


>gi|323492969|ref|ZP_08098107.1| hypothetical protein VIBR0546_19372 [Vibrio brasiliensis LMG 20546]
 gi|323312800|gb|EGA65926.1| hypothetical protein VIBR0546_19372 [Vibrio brasiliensis LMG 20546]
          Length = 367

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 119/353 (33%), Gaps = 19/353 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     +  +    ++++ +   S      ++++      +P++  
Sbjct: 2   IIVRYLIRETLKSQLAIFFILFLVFLSQKLIKVLADASDGDIPASLVMHYVALSMPSMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++  +    +  +  
Sbjct: 62  LMLPLSLFLGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLAVITGVIAGFNSFVFS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +  + QL  + +   +   L++  F    D   +          L+ +F+   R   
Sbjct: 122 PYSQDKLVQLQEEVEAENSVDLLKKGHFQGTPDGSSVVFIDDIDGKQLKHVFVAQMRPRD 181

Query: 183 T-----HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +           +   +   RQ I + DG  +   P   D  + KF  Y       +   
Sbjct: 182 SILPSVSFSQSGEVKELSDGRQVIRMYDGTRYEGVPTRVDYMVTKFDQYEGLIGQRDVKR 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       L+                 ++E   R++     V   L++++     A
Sbjct: 242 KGRDWEAIPTLELM----------KNPDPRAQAELQWRISL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
           +  ++ +   +  ++ I    F   S     + ++     I+ ++    + + 
Sbjct: 289 VNPRQGRFAKMGPAILIYLAYFLSISATKSAL-EDGSIPAIIGMWPINAALLL 340


>gi|304311790|ref|YP_003811388.1| Predicted permease YjgP/YjgQ [gamma proteobacterium HdN1]
 gi|301797523|emb|CBL45743.1| Predicted permease YjgP/YjgQ [gamma proteobacterium HdN1]
          Length = 352

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 110/356 (30%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI   +  S     L IV +  V   +  +  +  +   +   L+     IP  
Sbjct: 1   MRLLDRYIGVSVLTSVAGMLLLIVGLDVVFSFIGELEDL-KNQYQMPQALQYILLTIPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L  +   +EL +I   G S + ++   +   +L+ +   +    
Sbjct: 60  VYDYVPVATLIGCLIGLGMLANTSELTVIRAAGVSVMRIVWSAVKPVLLVVVGALVLGQY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK     + L                 ++R  D+ +   +             V   D
Sbjct: 120 VVPKTEQYAQGLRTLWIDGSDTISSRNGFWYREGDEFFHVNAIQTDGVVYGLARYVFDGD 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +  YA+ G    +     L +    R        + M+  ++  Q      S +VL
Sbjct: 180 QRLLEAEYAERGVF--EGDHWRLENVRRTRFDQDHTQYATMESSTWRSQITPQLMSLVVL 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    +L+ L        + +      +   F K+  Q    ++   I+I          
Sbjct: 238 KPTALSLTDLY-TFARYRDQQSISSGQFYYAFWKKTLQPATTIVMVFIAISFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              +     I + + F         I  +   P  I    L +     + + ++++
Sbjct: 297 TMGQRLITGIIVGLVFTYAQDMLGHISVVYNVPPLIAA-GLPIAIFLGVGIKLLRR 351


>gi|55980366|ref|YP_143663.1| hypothetical protein TTHA0397 [Thermus thermophilus HB8]
 gi|55771779|dbj|BAD70220.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 347

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 116/357 (32%), Gaps = 10/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+LR     F    L IV +     + + +  + +       LL+   +  P  
Sbjct: 1   MKTLDRYLLRETLPLFGGGLLVIVLLFLGGAVYEVLAPLVAKGADPYTLLRYLLFRTPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  +      +L+ +  + EL  +   G  R  L+ P L L   +++  F+    
Sbjct: 61  LARGAPVAYLFALLVLLSRLGEDAELKALLALGVRRERLLLPFLLLGTAIALAAFLLGEG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+  +  + L  +  L    + L     F+      + + K           +     
Sbjct: 121 LVPQALAKGQDLLRREVLERPRALLTPGATFQDAQGRVVYVGKVEGEAIGALRVLSREEV 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +    + G + ++    I  +G   R        ++ +F+   L  +         
Sbjct: 181 LLAERG-SFRGGVLHVEEGTRITYEGSRPR--------TLARFQRGELVLKDLTFDPWQN 231

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            AN   L+ L                   + +++R  + L   +F L ++  A       
Sbjct: 232 PANRMTLAEL-RKEVQRLRQMGVRAGLEATTYYRRFAEPLAAPVFALFAVGLAFYLLGGS 290

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +   +  + +     +  +     +  +   +P+        L+    +FL +  ++
Sbjct: 291 RSLGLVGVAVLTFFYYATWSVGRIMGEQNALDPFLAAFGPNLLYGALGLFLFLGGRR 347


>gi|258648441|ref|ZP_05735910.1| putative membrane protein [Prevotella tannerae ATCC 51259]
 gi|260851193|gb|EEX71062.1| putative membrane protein [Prevotella tannerae ATCC 51259]
          Length = 428

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 126/366 (34%), Gaps = 10/366 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +   + YI+     +++     I+ IA +    ++I+    +  S   I        IP 
Sbjct: 67  LTRLDRYIIYKFLSTYIFLIGIIISIAIIFDYNEKIDKFEKAHVSWTKIAFDYYLNFIPY 126

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   L++P +  A ++++  F    
Sbjct: 127 FSNLFSPLFVFIAVIFFTSKLADNSEIIAMKSTGMSFRRLLRPYMISAAIIALTSFGLGA 186

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + PK          +    L      EN+  ++D  + + IS+++        F +D  
Sbjct: 187 YVIPKGNVARVNFENRYIKKLNAPTSVENVQMQVDTGVVVYISRFDNETKSGYGFSLDKF 246

Query: 180 DTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
             +    +              +    L   +  +   + + IS        +  E  + 
Sbjct: 247 YGKKLIDHLTAQSIQYDTLAGKKNQWTLRQVQQRKMRGLRERISYADKVDTIIMMEPQDF 306

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             +  +     +  L              +  +  E+HKR        I  LI +     
Sbjct: 307 FYVRNQQETMTVPELRQFIDKQQMRGAAGVSLFEVEYHKRFAMPFAAFILTLIGVSL--- 363

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM-I 354
            +  R+      I + +++SF  +  F  I      N  + P+L +++  +  + +   +
Sbjct: 364 SSQKRKNGMGTSIGVGIALSFS-YILFQTISSSFAVNANWSPMLSVWIPNLLFVLIAFGL 422

Query: 355 KKKYTK 360
            K+  +
Sbjct: 423 YKRTPQ 428


>gi|319788013|ref|YP_004147488.1| permease YjgP/YjgQ family protein [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466525|gb|ADV28257.1| permease YjgP/YjgQ family protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 366

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 110/358 (30%), Gaps = 7/358 (1%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           +LYI R +  S L++   +V +  V+ +  ++  +   +      L +  Y +P     +
Sbjct: 9   DLYIGRVVLASVLLTWAVLVGLDVVLALSGQLGDLGKGSYDFPTALAVVAYSVPRRAYTI 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P+   + +   L  +   +EL  +   G SR  L   V    +LL+  + ++   + P 
Sbjct: 69  FPYAAVIGSLLGLGQLAGTSELTALRALGLSRRRLSISVAAALVLLTGLMVVTGETLAPW 128

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS-----KYNPNNTLQGIFIVDSR 179
            +    QL   A+           L+ R  D     I      +            +   
Sbjct: 129 GQRQADQLKLAAKNNNVAMARYSGLWAREGDTFLNAIDGQERVEGGQRVLELRDVRLYEV 188

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +       ++G +  D     L D      +         + + +  + ++   +  V
Sbjct: 189 GEEGEVRSLTRAGLVVHDANGWQLRDVRRVAFTGAGAVEETAEEQKWDSELDANALAAGV 248

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +  + + S L   +             Y   +  R    L  +   L ++  A      
Sbjct: 249 TRPRNLSASDL-QASIEYRRRNGLDARDYEDTYWSRWFYPLNVLALCLAAVPFAFGSLRS 307

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
               K   + I  ++ F +     +          Y     L    + +    + ++K
Sbjct: 308 GGMGKRLFLGIVFALGFML-LQMQFGRLAGAFRFDYRIAYALPPVLMLATSWFLFRRK 364


>gi|259419234|ref|ZP_05743151.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
 gi|259345456|gb|EEW57310.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
          Length = 368

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 119/362 (32%), Gaps = 15/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +LY  +   + FL+    ++ +  +I + ++             LL+++    P  L 
Sbjct: 2   ILDLYYAKRFFQWFLVIAAVLMSLVMLIDLSEQFRRFDGQDLQFGQLLELTLLNTPAALN 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    + T  +   M R++EL++    G S I  + P + +A++L      + N I 
Sbjct: 62  EFLPLIMILTTIVLYVGMARSSELVVTRALGRSGIRALLPPVVVALILGGLAVSTLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLA----LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD- 177
               +    LS   +            E     +   +    I   N     + +F+ D 
Sbjct: 122 AATTNRFDSLSESYRQTGGPAAVSLSGEGLWLRQGGQNGQSVIHAANYRGDAENLFLYDV 181

Query: 178 ---SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQ--TE 231
              +            +    LD +  +L D +V +     + + S   +    L     
Sbjct: 182 SILTYTPDGGPTRRTIAAEARLDGEDWVLRDAKVWQLIVGVNPERSAKSYDELRLPTTLT 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           +      +  A   ++  L      + +        ++      L + LF V   L+   
Sbjct: 242 NERIRDTLGYAEGISIYEL-PQTIKSLSEAGFSTTRFQVWLQVELARPLFLVAMVLVGAA 300

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                   R       +  S+ + F +++  ++    + +N     +L  +   ++SI L
Sbjct: 301 F--TMRHTRLGGTGIAVLTSVLLGFALYFVHNFA-RILGENGQIPILLAAWAPPVASILL 357

Query: 352 LM 353
            M
Sbjct: 358 TM 359


>gi|114319720|ref|YP_741403.1| permease YjgP/YjgQ family protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226114|gb|ABI55913.1| permease YjgP/YjgQ family protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 372

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 133/361 (36%), Gaps = 22/361 (6%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y++R +  ++L   L +  +    +++  +   +       ++L + G      L M+
Sbjct: 10  DRYLVREVLFAWLAVLLVLFAVLATNRLIGYLGDAAGGELPGGVILTLLGLQTVRYLGMI 69

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P  F +        + R++E+ ++   G       + +L+LA+ L+  + +      P 
Sbjct: 70  LPASFFLGIVLAFGRLYRDSEMAVMSACGIGPWRQFRALLWLALPLAGLVGLLSLYWGPA 129

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL--YIKISKYNPNNTLQGIFIVDSRDTQ 182
                +Q+ A+A+  + F+ L+   F +        + + + + +        + +  T 
Sbjct: 130 ATQKAEQVQAEAEAQVEFAALQAGRFLQARGATEGTLYLERLSEDQREMEDVFIRAGGTA 189

Query: 183 THKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-T 237
              +  A+ G  + D     + ++L DG  +   P + D  + +F+ + +     +    
Sbjct: 190 DRVVLAARRGVQEKDPETGDRYLVLLDGWRYDGRPGAADWRVTRFERHGVLVAEGSEEVA 249

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + L+ N Q  + L                  R+E   RL      ++     ++A     
Sbjct: 250 VRLRRNAQPTAELW----------GSDHPADRAEVQWRLAMPAMTLLLA---LLAVPLSK 296

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIK 355
              +  +   +  ++ +  G F   +     +   Q P  + + +L    ++   L ++ 
Sbjct: 297 SAPRDGRYGRLLSAVLVYVGYFQFLTVGQDWLETGQVPAALGLWWLHGAVLAVGVLGLLW 356

Query: 356 K 356
           +
Sbjct: 357 R 357


>gi|333030546|ref|ZP_08458607.1| permease YjgP/YjgQ family protein [Bacteroides coprosuis DSM 18011]
 gi|332741143|gb|EGJ71625.1| permease YjgP/YjgQ family protein [Bacteroides coprosuis DSM 18011]
          Length = 363

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 125/363 (34%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +   + YI++    +++ +   ++ IA V    +R++   ++    + I+       +P 
Sbjct: 5   LTRIDRYIIKKFLGTYIFAITLVISIAVVFDFTERMDRFMNNNAPWDAIIFDYYFNFVPY 64

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +     +      + +  N+E++ + +TG S   L+KP +  A ++++F F+   
Sbjct: 65  FANLFSALFVFIAVIFFTSKLAENSEIIAMLSTGMSFSRLMKPYMISAAIIALFTFVLGG 124

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + PK      +   +       S          +  +       + N T   + +    
Sbjct: 125 YVIPKGSVARVEFEDQYYKKRKKSSARNIQLQVEEGLIAYIDRYSDYNKTGYRVILDKFE 184

Query: 180 DTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             +      A+S + D        L D  V     + + IS    K   L  + ++    
Sbjct: 185 GKKLSSHLTARSITYDSTAVNMWTLKDYTVRDFDGLHEYISKGDSKDTVLAMDPSDFLEF 244

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        L        +      + +  E+HKR+       I  +I        + 
Sbjct: 245 QNQEQMMTNPELRAHIDKQKSRGFGNTKVFEIEYHKRIAMSFAAFILTIIGASL---SSR 301

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKK 357
             +R     + + L++SF  +  F  I      +    P++ +++   + +     + +K
Sbjct: 302 KAKRGMGLHLGVGLALSFS-YILFQTISGTFAVSGVVSPMVSMWIPNILYAFIAYYLYRK 360

Query: 358 YTK 360
             +
Sbjct: 361 APR 363


>gi|299771880|ref|YP_003733906.1| permease YjgP/YjgQ family protein [Acinetobacter sp. DR1]
 gi|298701968|gb|ADI92533.1| permease YjgP/YjgQ family protein [Acinetobacter sp. DR1]
          Length = 366

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 120/354 (33%), Gaps = 14/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +      +IL  I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVISLLTLIMMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + ++ + ++  +   +    + 
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWMT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      ++L+    +   F  +    F           S       L+ IF       +
Sbjct: 122 PWGLREFEKLTTTQAVRTGFDLVRPREFISSGPYTIYAGSLSEDRKNLKDIFFYQRATKE 181

Query: 183 THKIYYAQSGSIDLDR------QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                   +               + L  G  +   P     +  +F+SY L+ E+    
Sbjct: 182 DKPDVMILAKEATRVEVANDTANVVDLVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKDV 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  +   +  L    N+P          RSE   RL      +I  ++S+  ++  
Sbjct: 242 KFESGDVEALSTTKLFSKTNDPV--------IRSELGWRLFGPFTIIIALMLSVALSEVS 293

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
               +  ++ P     S    +       I K E + +  P + +     +++F
Sbjct: 294 PRQGRYYRLIPAIFIFSSLIVLMIAIKTRISKEELDIWAYPAVLVVYGVAAALF 347


>gi|94263395|ref|ZP_01287209.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
 gi|93456231|gb|EAT06365.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
          Length = 400

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/348 (16%), Positives = 125/348 (35%), Gaps = 8/348 (2%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFA 70
            +   F  + L I  + ++ +++  ++ + S    L   L++  Y+ P++L    P    
Sbjct: 15  EMLAPFFAALLVINAVLFLGRLVPMLDEIFSLGVGLGDFLRVVAYITPSMLLFSLPMAAM 74

Query: 71  METTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIK 130
           M      T +  + E++ +  +G S   ++ PV+F  +L  +    +  ++ P+  + + 
Sbjct: 75  MAVIIAFTRLAGDLEIMALKASGISLPRMLPPVVFFGLLTGLMTLATATVLIPRGMTAMD 134

Query: 131 QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           QL            + E  F     D+ + +   +P+     G+++ D RD        A
Sbjct: 135 QLMIHLAKEHIEEGIREKTFSEGLGDVVLYVDDISPDQRFWHGVYLSDLRDKDNPLTISA 194

Query: 190 QSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ 245
           Q G++  D  A      L+DG +HR          + FK Y L+    + +      +  
Sbjct: 195 QGGNLRADPAAGRVVLSLSDGSLHR--SAGAKSQTIFFKHYNLEIPLDSPTLGPPGRSSM 252

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
             + L           P     Y  E+H+RL   +   +  ++ +  +      R    +
Sbjct: 253 TQAQLRQRATELGPEHPRQY-RYIGEYHQRLALPVGCFLLAMLGLSLSQMGQGSRLALGV 311

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                S    + +      +             L   LF ++  +LL 
Sbjct: 312 PLGLASFVAYYVLLTAAKSLGEAGTLPMALAIWLPNLLFLLAGGYLLW 359


>gi|159903539|ref|YP_001550883.1| putative permease [Prochlorococcus marinus str. MIT 9211]
 gi|159888715|gb|ABX08929.1| Predicted permease [Prochlorococcus marinus str. MIT 9211]
          Length = 401

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 133/373 (35%), Gaps = 23/373 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  +    L +      ++  +  +   +  +  S    NI +++    IP  L
Sbjct: 31  LLDRWLLGELIPPLLFAISAFTVVSLSVGVMFDLVRQIVESGLPFNIAIQVFLLRIPGFL 90

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M T    + ++ N+EL  + + G S   +I P + LA+L++   FI  N I
Sbjct: 91  VLSFPMAMLMATLLAYSRLSSNSELKALRSLGVSTKRMIAPAMALALLITSITFIFNNSI 150

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-------------YIKISKYNPNN 168
            P      + +   +      + + E++ F     +             ++  +     N
Sbjct: 151 VPISNRNSEYILQNSLGKAISNQIGEDIIFSRKGRIDGLKDEKKRKSLTHLFYAGKIDKN 210

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            +  + ++D       ++  A     +  +      DG +   SP + + +  KF+SY+ 
Sbjct: 211 KISKLTLLDFSKKGYTQMIVANKALWNESKGIWDFIDGMMLTLSP-TGNTTTTKFQSYSY 269

Query: 229 QTESANSS--TIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLFPVIF 285
              +      +I   AND  +S  L            +     R    ++ T  +  ++F
Sbjct: 270 PLGTGPIKIGSIPKDANDMTVSEALKAEQLYLKSGNIKEARRMRVRIQEKFTLPMACIVF 329

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--L 343
           GLI      K +    R +   + +       +++  S+    +  +    P    +  +
Sbjct: 330 GLIGSTLGAKPSTTTSRSQGFGVSV---FLILIYYVLSFSFSSLGVSGALTPFFAAWTPV 386

Query: 344 FCISSIFLLMIKK 356
           F   +    ++KK
Sbjct: 387 FLSLAGGAFLLKK 399


>gi|311745737|ref|ZP_07719522.1| membrane protein [Algoriphagus sp. PR1]
 gi|126575180|gb|EAZ79530.1| membrane protein [Algoriphagus sp. PR1]
          Length = 357

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 114/352 (32%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  I++   +++    L ++ I  V+   ++ +    +      ++K        +
Sbjct: 1   MKLLDKLIIKDFLKTYFFVVLMLILIVLVLDFTEKNDSYIRNDVPSGEIMKYMINYGLYL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++TP    +    + + M   TE++ I ++G S   +++P +F A+L+    F+    
Sbjct: 61  NNLLTPITVFISVIFITSKMAGRTEIIAILSSGVSFPRMLRPFIFAAMLIGGVSFLLNGW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     + +           +           D        Y   NT     +   RD
Sbjct: 121 VLPVATEGVTKFKLTYIDKTRTASDPNVHIKVGTDSYAYLSRFYKTGNTGYHFTLETIRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +      +     D  +    L +      +   +D S+ +    TL     +      
Sbjct: 181 GRLINKLSSDRIQWDTAKNVWTLKNWRFRELNEFGEDYSVGEEMDTTLSITPDDFDLPEN 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                 L  L        +   + +  Y+ E + R       +I   I ++ + K++   
Sbjct: 241 HHETLKLPELSRQIRVLEDRGADNVAFYKIERYVRFMSPFAAIILTFIGVIMSAKKSRGG 300

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
              +I   F+   I   +F             P +   L   +F ++ + L 
Sbjct: 301 SGFQIAMGFLLAFIYILLFILSRTFAENGASYPIFAVWLPNIVFGLTGLVLY 352


>gi|146277167|ref|YP_001167326.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555408|gb|ABP70021.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 364

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/362 (9%), Positives = 88/362 (24%), Gaps = 12/362 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI R   R   +  L    +  +I +L ++   S    +L     +S   +P  + 
Sbjct: 2   ILSRYIARRFLRMVFIVFLVFFGLMMLIDVLDQMRRFSDEGITLVQAGLLSLLRVPATIY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +    +   + R +EL+++   G S +  +   + +A+ +        N I 
Sbjct: 62  TILPLIVILAAVALFLGLARTSELVVVRAAGRSGLRFLVAPMIVALAIGAAAVTVLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR------LDDDLYIKISKYNPNNTLQGIFIV 176
                     +++                           +            L  +  +
Sbjct: 122 AGTSRQYDAAASRLARGEASILSISEEGLWLRQGGAEGQTVIHAARSNTDGTRLYAVTFL 181

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVH-RKSPISKDISIMKFKSYTLQTESANS 235
                   +   A   +        +          +      ++               
Sbjct: 182 TFDGNGLPRSRVAAEQAALETGYWQLSGAKSWDLTLANPEASANLEGNIRVPSDLTREGI 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  +   +  L                 +R      L          L++  A   
Sbjct: 242 QDSFGDPSAIPIWEL-PAYVAGLERAGFSARKHRVWMQMELALPFMLAAMVLVA--AGFT 298

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLM 353
               R       + ++L   FG+F+  ++        Q P  +      L  +     L+
Sbjct: 299 MRHSRFGGTGRMVLLALLSGFGLFFLRNFAQVLGENGQIPILLAAWSPPLIGVMGSLGLL 358

Query: 354 IK 355
           + 
Sbjct: 359 LH 360


>gi|269140437|ref|YP_003297138.1| hypothetical protein ETAE_3096 [Edwardsiella tarda EIB202]
 gi|267986098|gb|ACY85927.1| hypothetical protein ETAE_3096 [Edwardsiella tarda EIB202]
 gi|304560230|gb|ADM42894.1| Putative inner membrane protein [Edwardsiella tarda FL6-60]
          Length = 356

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 116/353 (32%), Gaps = 2/353 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I  + +M+   +V ++ +I+ + ++  V     S+      +   IP  + +
Sbjct: 5   LDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQGDYSVAGAGLFTLLSIPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++   G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGMLAQRSELVVMQAAGFTRMQVASAVMKTAIPLVLLTMAIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+ Q+        +   +  D + ++ I++   + TL G+ I      + 
Sbjct: 125 QGDQAARNYRAQ-QMYGGSLLSTQGGLWAKDGNQFVYIAQVVNDRTLGGVSIYTLNAQRK 183

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
                  + +    +Q  +    E +   P     S      +           + +  +
Sbjct: 184 LTSLRYAASATFDGKQWKLAQVEESNLTDPKMITGSRTLSGVWKTNLTPDKLGVVAVSPD 243

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++S L +          +    Y+     ++   L   +  L+++             
Sbjct: 244 SLSISGLYH-YVKYLKQSGQESSRYQLNLWSKIFAPLSVAVMMLMALSFIFGPLRSVPMG 302

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                 I     F V       +  +   P  I  +      +     L++++
Sbjct: 303 VRVLTGICFGFVFYVLDQIFGPMSLVYNVPPVIGAVLPSALFLGLSVYLLLRR 355


>gi|113460663|ref|YP_718729.1| permease [Haemophilus somnus 129PT]
 gi|112822706|gb|ABI24795.1| conserved permease [Haemophilus somnus 129PT]
          Length = 356

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 126/357 (35%), Gaps = 3/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + YI + I  + L + L +V ++ +I+ +++   +   T  +      +   +P  
Sbjct: 2   MNTLDRYIGKNILGAILATLLMLVGLSAIIKFVEQFRSIGKGTYDVIQATLFTLLTMPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L ++   +EL++I + G SR  +   V+  A+ L +   I    
Sbjct: 62  IETFFPMAALLGSLIALGNLASRSELIVIQSAGFSRFRIGLAVMKTALPLMLITMIIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+      +      ++       +N  +  D + +I + +   +  L  I+I    D
Sbjct: 122 GIPQTEH-FARDMRAKAISGGSMLSVKNSIWARDSNDFIYVGRITNDIRLNDIYIYSFDD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  K     + +     +  +    +    +   K I+ +K  +++            L
Sbjct: 181 KRQLKQVTHANQASFEHGKWKLSGINQSQIFADEIKTINRLK-DNWSTTLTPDKLGIASL 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    +++ L N          +  + +   F +++ Q +   +  ++++          
Sbjct: 240 RPTSLSMTGLYN-YIKFMKETGQDAKRFELTFWQKVFQPVSVAVMMMLALSFIFGSLRSV 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    I     F V       +  +   P  +  L   L  +  I+ L+ +K+
Sbjct: 299 TAGARIVTGIFFGFLFYVINEILGRLSLLYDIPIVLAALIPSLLFMILIWWLLNRKR 355


>gi|262170557|ref|ZP_06038235.1| predicted permease [Vibrio mimicus MB-451]
 gi|261891633|gb|EEY37619.1| predicted permease [Vibrio mimicus MB-451]
          Length = 366

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 117/357 (32%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +    QL  +     +   L++  F R  D   +       N  L  +F+       
Sbjct: 122 PWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLHNVFVAQLAPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +               +   RQ I L +G  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSNSGDVKELSDGRQIITLYNGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LL                 ++E   RL+     V   L++++     A
Sbjct: 242 SGRDWEALPTLSLL----------KNSDLQAQAELQWRLSL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +  ++ +   +  ++ I    F   S     I ++     I+ L+    + +   ++
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALSATKSAI-EDGSLPVIIGLWPVNAALLIAALV 344


>gi|325860534|ref|ZP_08173638.1| permease, YjgP/YjgQ family [Prevotella denticola CRIS 18C-A]
 gi|327313657|ref|YP_004329094.1| permease [Prevotella denticola F0289]
 gi|325481919|gb|EGC84948.1| permease, YjgP/YjgQ family [Prevotella denticola CRIS 18C-A]
 gi|326944618|gb|AEA20503.1| permease, YjgP/YjgQ family [Prevotella denticola F0289]
          Length = 405

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 120/359 (33%), Gaps = 8/359 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTVL 61
             + YI+R    +++ + L I+ IA V    + ++  +        I+       IP   
Sbjct: 47  ILDWYIIRKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIVFDYYANFIPYYS 106

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            + +P    +      + +  N+E++ +   G S   L++P +   +L++   F   + +
Sbjct: 107 NLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSIRRLMRPYMISCVLIAGLTFYLNSFV 166

Query: 122 EPK---CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
            P     R   + L   ++   +   ++  +       +    ++Y        + I D 
Sbjct: 167 IPHGTVIRQNFESLYRNSKKNTSAENVQLYVAKNTTAYIQHYDNQYKRGYGFSLVKIKDK 226

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +          Q  ++   +    L++ ++     + + I     K   L  E  +    
Sbjct: 227 KIVSHMTAMEIQYDTVADTKFHWRLSNWKMRTLKGLKEHIQSGASKDTVLLMEPTDLVYS 286

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        LL+      +     +  Y  EFHKR+       I  +I +      + 
Sbjct: 287 KGQQETFTSPELLDYISKQTSRGSGNVVQYEVEFHKRIAMSFSSFILTIIGLSL---SSR 343

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            R+      + I L++SF  +     +           P+L  ++  I    +     +
Sbjct: 344 KRKGGMGLYLGIGLALSFS-YIMLQTVSSTFAIQADTPPLLAAWIPNIIFAVIAYFCYR 401


>gi|323496139|ref|ZP_08101199.1| lipopolysaccharide ABC transporter permease [Vibrio sinaloensis DSM
           21326]
 gi|323318883|gb|EGA71834.1| lipopolysaccharide ABC transporter permease [Vibrio sinaloensis DSM
           21326]
          Length = 356

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/358 (12%), Positives = 122/358 (34%), Gaps = 5/358 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  M    ++ ++ +I+ ++++  V   +  L          +P  +
Sbjct: 3   KILDLYIGRTIIATTTMVLATLIGLSGIIRFVEQLRSVGRGSYDLLHAFYFVVLGVPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M       +     L  +  ++EL+++  +G S++ +   VL  A+ L + + +     
Sbjct: 63  EMFFAMSALLGALIGLGMLASSSELVVMQASGYSKLDIGISVLKTAVPLMLIIMLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +      ++           +  D D +I I K   +N           D 
Sbjct: 123 APQAQ-KMARELRSFSISGGQIVSVRAGVWARDADDFIFIGKVEDDNLYGLKVWRFDEDK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           + +++ +A       + Q ++ +         +    S ++  ++         + + ++
Sbjct: 182 KLYQVLFAPEADYQGNNQWLLKDTQITDMADRVELAKSTVREYNWHTTLVPDKLAVVKVE 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             +  +S L +          +    Y     +++TQ     +  L+++         R 
Sbjct: 242 PEELAMSGLYD-YVTYLKESEQDSSRYELALWRKVTQPFSIAVMMLMALSFVFGPL--RS 298

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL-FCISSIFLLMIKKKY 358
                 I   +   F  +    +                +       +I +L++++K 
Sbjct: 299 VSMGARILSGVVAGFTFYISSEFFGPLTLVYGIPPVFGAIMPSIVFLTIAILLLRRKL 356


>gi|254460215|ref|ZP_05073631.1| permease, YjgP/YjgQ family [Rhodobacterales bacterium HTCC2083]
 gi|206676804|gb|EDZ41291.1| permease, YjgP/YjgQ family [Rhodobacteraceae bacterium HTCC2083]
          Length = 365

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/356 (10%), Positives = 113/356 (31%), Gaps = 14/356 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y  R   R FL + L  +    +I +++++    S   S + ++ ++ +  P  + 
Sbjct: 2   ILHFYFARRFFRVFLTTLLIFLAFLTLIDLVEQMRRFDSKDVSFSDIVFLTLFNAPGAIY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +   ++  ++ R +EL++  + G S +  +   + +A ++ I      N I 
Sbjct: 62  QILPLVMILSAVSLFLTLARTSELVVTRSAGRSALVTLASPMCVAAVIGITTVTLFNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-------LYIKISKYNPNNTLQGIFI 175
                    L  + +     +         L          ++   +  +        F+
Sbjct: 122 ASTTRQYITLEQEYKSQKKNTVSIGRDGLWLRQGDENGQTVIHALSTSDDMRTLFDARFL 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ--TESA 233
             + D+Q      A    +       ++        +  + + +  +     L       
Sbjct: 182 QYNTDSQPKTRIIADEARLTNTG-WQLIRAKHWSLDTSGNPEETAREIDVLMLPTTLTIE 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           N      +    ++  + +               ++        + LF +   L+     
Sbjct: 241 NIRDSFSEPAAISIWEM-DAYIEGLEEAGFSTRRHKVWQQMEFARPLFLMAMVLVGASF- 298

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                 R  K    +  ++ + FG+++  ++    + +N     ++  +   I+SI
Sbjct: 299 -TMRHTRFGKAGVAVLAAIMMGFGLYYVRNFAQ-ILGENGQLPTMIAAWTPPIASI 352


>gi|54298619|ref|YP_124988.1| hypothetical protein lpp2683 [Legionella pneumophila str. Paris]
 gi|53752404|emb|CAH13836.1| hypothetical protein lpp2683 [Legionella pneumophila str. Paris]
          Length = 359

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/369 (12%), Positives = 120/369 (32%), Gaps = 22/369 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + +  + +     +V I    Q +Q +N  +S +    +++K+    +P ++ 
Sbjct: 2   IIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMG 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        +   +E+ ++   G     L+K    +A ++ + + +      
Sbjct: 62  LLLPLGFYVALLLAYGRLYAESEMTVLRACGYGPKQLLKHSFAMATVVLVVVAVVMIWAS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +L     +      +    F  ++    I   +    +  Q   I  ++ + 
Sbjct: 122 PVIAVERTKLIRSTGIKTLVQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHSV 181

Query: 183 THKIYY---------AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
                              +     + I+L +G+ ++  P   D  I +F SY  +  + 
Sbjct: 182 QDNRLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPNP 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
               +   A       L   N +N            +E   R++  L  +   L+++   
Sbjct: 242 TV-VMHDDARTAKTRDLWPLNNHNLKKA--------AELQWRISIPLMVLTLTLVAVPL- 291

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLL 352
               +  +  K   +  ++ I              I      +   ++     ++ + +L
Sbjct: 292 --SRVSPRSGKYSKLLPAIIIYIFYANFMFVSRDAIATGKIPWWIGMWWVHAAVAILGIL 349

Query: 353 MIKKKYTKI 361
            I +   K+
Sbjct: 350 FIWRNQVKL 358


>gi|66044344|ref|YP_234185.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae B728a]
 gi|63255051|gb|AAY36147.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae B728a]
 gi|330969233|gb|EGH69299.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 353

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 110/355 (30%), Gaps = 4/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +  +   +  +  + S T +L   L       P  
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDI-SDTYTLADALSYVMLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++  ++EL I+   G S   ++  V+   ++L I   +    
Sbjct: 60  VYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMIAGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ +         L+ R  D+     +       L          
Sbjct: 120 VAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINTVQPNGLMLGVTRYRFDDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+  +   D     L D      +    ++     + + +       ST+++
Sbjct: 180 RHMQTSSFAKEANFKTD--YWELKDVTTTHFNDGRTEVINTPVERWDVALSPQLLSTVIM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                ++S L     +    +      Y   F  ++ Q    V   L++I          
Sbjct: 238 PPESLSISGL-WSYAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +     + +  +F +          +   P  + +L     C  +  LL+ +
Sbjct: 297 TLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLLPAAACALAGVLLLRR 351


>gi|224825294|ref|ZP_03698399.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
 gi|224602215|gb|EEG08393.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
          Length = 358

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 115/352 (32%), Gaps = 2/352 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI   +  + L +   ++ +     I++ +  +   +  +  +L     L+P  
Sbjct: 1   MKLIYRYITTQLTVATLYALAALLALYAFFDIIKEVPDLGHGSYGVPQMLLYIALLMPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     +T +  ++E  II  +G +   +   +L   I  ++   +    
Sbjct: 61  AYELMPLVVLIGGMVAMTQLATSSEYTIIRTSGVTLAQVAGVLLRFGIGFAVITGLLGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P      +++   A  ++        ++ + D +          N  L        +D
Sbjct: 121 GAPFSEKQAERMKLSATKSMVTQEFHSGIWVKDDQNFINVGEMLPDNTLLGVRIYTYDKD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +  +A+ G+    +    L   +       +     +    +    E +    +++
Sbjct: 181 YRLVQTRFAERGTYQRPQHVWRLEKVKETTLGDKATTTRQLNTLDWHSVIEPSILDVLLV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L      +     +  + Y      +    L  +   L+++    ++    
Sbjct: 241 VPEQMSAMDLT-TYIEHLRSNEQKTQRYEIALWSKFFYPLACISMALVALAFTPRQRRHA 299

Query: 301 QRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           Q      + I L ++F  V   F+++    + N  +   L   LF ++ I +
Sbjct: 300 QLGIRLFVGICLGVAFHFVNRLFAHLGLLYDWNAMFAATLPTLLFLLAGITI 351


>gi|150024706|ref|YP_001295532.1| hypothetical protein FP0611 [Flavobacterium psychrophilum JIP02/86]
 gi|149771247|emb|CAL42716.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 361

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 124/363 (34%), Gaps = 9/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YIL+    +FL+  L  + I   + I ++IN +  +   ++ +L      I   
Sbjct: 2   LTILDKYILKRYLATFLVMLLLFIPIGITVDIAEKINKILENKVPIDKVLSYYVDFIIYF 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +        +  NTE++ I ++G S    ++P +  A ++S F  +    
Sbjct: 62  TNFLFPIFLFLSIIWFTAKLANNTEIIAILSSGISFSRFLRPYIIGATIVSFFALLMGFF 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK     K       +      + E             I   N +   +  +      
Sbjct: 122 LAPKASEGFKNFRYLYLIGNGKDEMRETNDVYRQISETEFIYVSNFDIEAKTAYNFVFEK 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               K+ Y  S      +   +   L +        ++  I     K      +  + + 
Sbjct: 182 FNAEKLVYKISASSIQWNSKEKTYTLLNYSKRTVGALNDKIETENSKPMKFNFDLEDLTP 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +V  A   + + L              + TY    +++ +  +   I  +I++      +
Sbjct: 242 VVYIAETLSFTDLNKFIEKEKKRGSANINTYLVVKYRKYSIPISAFILTIIAVAV---SS 298

Query: 298 LVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           + R+      + I ++I+F   +    F+ +  K    P     +  F+F I + +LL  
Sbjct: 299 MKRRGGMGMNLAIGIAIAFSYIFLDKIFATLAEKSSIEPIIAIWIPNFIFGILAFYLLRN 358

Query: 355 KKK 357
            K+
Sbjct: 359 AKR 361


>gi|328954009|ref|YP_004371343.1| permease YjgP/YjgQ family protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454333|gb|AEB10162.1| permease YjgP/YjgQ family protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 372

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 122/361 (33%), Gaps = 6/361 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +   LY+ R   R+F ++    V I  +I   ++I+ +  +      +L+  G  +P   
Sbjct: 16  RLLMLYVAREFCRNFFLTLAAFVGIYLIIDFFEKIDRLHRAQLGFVGILEYFGAKLPLAT 75

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V P    +        + R+ E   I   G +   L++P+L LA +L +FL      +
Sbjct: 76  GQVLPASVLLAVIITFGILARHNETTAIKCAGLNITILLRPILLLASVLVLFLLSLNLFL 135

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLF-FRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            P     +  +            L +  + +   D     IS++  +        +   D
Sbjct: 136 TPWLTQRVNIIWETKVDKKPARELIDLKWLWYKGDRAIFHISEFRKDTKSMENVKIYVFD 195

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q H   +  +       Q    +DG +    P  + +S    +   + TE       + 
Sbjct: 196 QQFHLTQFIAAQRAQWTGQNWRFSDGMIQTFLPQGEIVSEAFVERTMILTERPEDFVNLE 255

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +   +   + L                Y  E H R+   L P+I  LI       R    
Sbjct: 256 RRVTELNGYDLYRYIRRLERDGYDSRPYWVELHSRIAFALTPIIVTLIGGGLIFWRE--- 312

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKKYT 359
           +      I   +++ F ++W  S     + Q  +   +L  +L   I  +   +   K +
Sbjct: 313 KGNISLGIVSGIALVF-IYWLLSTFFLSLGQVRFMPVLLAAWLANIIFGLGGFLALSKAS 371

Query: 360 K 360
           +
Sbjct: 372 R 372


>gi|156935579|ref|YP_001439495.1| hypothetical protein ESA_03443 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533833|gb|ABU78659.1| hypothetical protein ESA_03443 [Cronobacter sakazakii ATCC BAA-894]
          Length = 360

 Score =  107 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 119/357 (33%), Gaps = 3/357 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  + +M+   +V ++ +I+ + ++      + +       +   +P  +
Sbjct: 5   SVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLKKTGEGSYTALGAGTYTLLSVPKDI 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L IF       +
Sbjct: 65  QIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVAASVMKTAIPLVIFTMAIGEWV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     + L A+     +    ++ ++ +  ++          N          +   
Sbjct: 125 APQGEQMARNLRAQQMYGGSLLSTQQGMWAKDGNNFVYIERVKGENELGGISIYAFNDKR 184

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVL 240
           +   + YA +   D + +   L+  +     +P     S     ++           + L
Sbjct: 185 RLESVRYAANAKFDAEHKLWRLSQVDESNLKNPQQITGSQTLTGTWKTNLTPDKLGVVAL 244

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  ++S L N          +    Y+     ++ Q L   +  L+++          
Sbjct: 245 DPDALSISGLRN-YVKYLKASGQDASRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSV 303

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    IS    F V       +  +   P  I  L L       I L ++ K+
Sbjct: 304 PMGVRVVTGISFGFIFYVLDQIFGPLSLVYGIPPIIGAL-LPSASFFLISLWLLMKR 359


>gi|149378263|ref|ZP_01895975.1| predicted Permease [Marinobacter algicola DG893]
 gi|149357460|gb|EDM45970.1| predicted Permease [Marinobacter algicola DG893]
          Length = 353

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 114/355 (32%), Gaps = 4/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y++  +G +  +  L ++ +  +   +  ++   +  ++L  LL      +P  
Sbjct: 1   MRKIDRYVMSTVGGAMFLVMLVVLSLDLIFAFIAELDDAENDYQTLQALL-YVVMTLPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    M     L +M  ++EL +I   G S   ++   +   +++ +   +    
Sbjct: 60  IYDYLPLGAFMGCLVGLGTMASSSELTVIRAAGVSLKRIVWSAMKPTLVVVVLGVLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     + Q           S    +  +  + D+++ ++   PN  L G+ +    D
Sbjct: 120 VAPPA-ERMAQSQKTVAQGAGESIASASGIWHREGDVFMHLNAVQPNGVLHGVSLFRFDD 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +           I       +L +    R S         +   +      +  S +++
Sbjct: 179 ERWLVSASFAERGIYQGDH-WLLENVATTRLSDEKTTQETHRALRWETGLSPSVLSVLIV 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K  D  +S L     +    +      Y   F K++   L   +  L++I          
Sbjct: 238 KPEDLAISGLY-TYASYLGEQGLNAANYWLAFWKKVLMPLGTAVMVLVAISFVFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                    + + + F         +  +      + I+           +LM +
Sbjct: 297 TMGFRVFTGLIVGLLFKYMQDLLGPMSLVFGFNPVLAIILPIAINAVVGAVLMKR 351


>gi|145300688|ref|YP_001143529.1| permease [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853460|gb|ABO91781.1| predicted permease [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 356

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 113/355 (31%), Gaps = 2/355 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YI R I  S L+  L +V +A +I+ ++++  V      +   L      +P    
Sbjct: 4   ILDRYIGRVIFMSILLCELTLVGLAALIKYVEQLKSVGEGNYDMINALYYVLLSMPKEAV 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +     L  +  ++EL+++   G S+I+++   L  AI L I + +    + 
Sbjct: 64  QFFPLAALLGGLIGLGQLATSSELVVMQAAGRSKISIVMAALKTAIPLMILVGLMGEYVA 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     +        L+     +     +  D + ++ I+    +  L GI +      +
Sbjct: 124 PIA-KRMADDVKAGALSEGRLTVSAYGVWARDGNNFVNINGVRNDGALTGITLYRFTPER 182

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                      +      ++          P            ++ +        + +  
Sbjct: 183 KLIDILQAREGVFEQHHWLLKQVQITRFDDPAQILSETQAQMEWSSELTPKQLGVVSIDP 242

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
            +  ++ LL+      +   +    Y+ E  ++L   L  V   L++             
Sbjct: 243 ENLPVAGLLD-YIGYLDANKQDAGRYKLEMWRKLLSPLSVVAMILLASSFIFGPLRSVSM 301

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                + I    +  V       I  +   P  +  +   L      F ++ +K+
Sbjct: 302 GARMLMGIMTGFAVYVSDRVFGPISLVYAVPPILAAIAPSLLFGGISFYILSRKQ 356


>gi|237729200|ref|ZP_04559681.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908929|gb|EEH94847.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 360

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 112/354 (31%), Gaps = 2/354 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +    P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDAMGAGLYTLLSAPKDIQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+     +    ++ L+ +  D                      +   + 
Sbjct: 127 QGEQMARNYRAQQMYGGSLLSTQQGLWAKDGDSFVYIERVKGDAELGGISIYSFNDKRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S + D +++   L+  +      P     S     ++           + L  
Sbjct: 187 QSVRYAASATFDPEQKVWRLSQVDESNLTDPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKVFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  IS    F V       +  +   P  I  L            LM++K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLMLRK 359


>gi|224586303|ref|YP_002640102.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224470831|gb|ACN48661.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 360

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 115/354 (32%), Gaps = 2/354 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++                +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVPKDIQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                   V +   + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYVFNDQRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   D + +   L+  +     +P     S     ++           + L +
Sbjct: 187 QSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDS 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  IS    F V       +  +   P  +  L            LM++K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 359


>gi|148358635|ref|YP_001249842.1| permease [Legionella pneumophila str. Corby]
 gi|296108275|ref|YP_003619976.1| Predicted permease [Legionella pneumophila 2300/99 Alcoy]
 gi|148280408|gb|ABQ54496.1| permease [Legionella pneumophila str. Corby]
 gi|295650177|gb|ADG26024.1| Predicted permease [Legionella pneumophila 2300/99 Alcoy]
          Length = 359

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/369 (12%), Positives = 120/369 (32%), Gaps = 22/369 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + +  + +     +V I    Q +Q +N  +S +    +++K+    +P ++ 
Sbjct: 2   IIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMG 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        +   +E+ ++   G     L+K    +A ++ + + I      
Sbjct: 62  LLLPLGFYVALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVMIWAS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +L     +      +    F  ++    I   +    +  Q   I  ++ + 
Sbjct: 122 PVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHSV 181

Query: 183 THKIYY---------AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
                              +     + I+L +G+ ++  P   D  I +F SY  +  + 
Sbjct: 182 QDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPNP 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
               +   A       L   N ++            +E   R++  L  +   L+++   
Sbjct: 242 TV-VMNDDARTAKTRDLWPLNNHDLKKA--------AELQWRISIPLMVLTLTLVAVPL- 291

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLL 352
               +  +  K   +  ++ I              I      +   ++     ++ + +L
Sbjct: 292 --SRVSPRSGKYSKLLPAIIIYIFYANFMFVSRDAIATGKIPWWIGMWWVHVAVAILGIL 349

Query: 353 MIKKKYTKI 361
            I +   K+
Sbjct: 350 FIWRNQVKL 358


>gi|90021021|ref|YP_526848.1| SecD export membrane protein [Saccharophagus degradans 2-40]
 gi|89950621|gb|ABD80636.1| permease YjgP/YjgQ [Saccharophagus degradans 2-40]
          Length = 352

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 108/356 (30%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   I  +     L I+ +  +  ++ +++ +S    + +  +      IP+ 
Sbjct: 1   MTKLKRYIGHTIAAAVATVLLVILSLDAISDLVDQLSNLSGD-YTFSEAIIFVLLYIPSS 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +     L  +  ++EL+++   G S + L+  V+    +      +    
Sbjct: 60  AYDYLPLSALVGCLIGLGVLASSSELVVMRAAGVSVLQLVWAVMRPVCVFIGVGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P          A A+        E  ++ R  ++     +             +    
Sbjct: 120 VAPYSDQYADSRRALAKGHDRALQAERGVWNREGNEYMHFNAVLPNGKLYGITRYIFDEK 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q  +  +  S       +     DGEV        +      + +  +      + +VL
Sbjct: 180 GQLLEASFVDSAIYQ--GEFWFEQDGEVTSFEDGRIEKFGFATREWRTEVSPDLLNVLVL 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            A++  +  L +      + +      Y+  F  +  Q L      +I+I          
Sbjct: 238 DADELPMKRLYD-YSTYLDKQGLDSSEYKLAFWHKAFQPLAVASLVMIAISFILGPLRQT 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  I + + + F            I        +L + +     + + +I++
Sbjct: 297 TMGFRVFIGVIVGLVFQTSQKMLGPASIIMGFSPMFAVL-IPIVVCLVLGVFLIRR 351


>gi|172036161|ref|YP_001802662.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
 gi|171697615|gb|ACB50596.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
          Length = 401

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/373 (11%), Positives = 122/373 (32%), Gaps = 20/373 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPT 59
           +   + Y+   +    L S   +  +   I  L  + + V  S   L    +I    +P 
Sbjct: 28  LSLMDRYLASQLIGPLLFSVGLVSVLGVAIGYLSDLADKVVDSNLPLIQASEILLLKVPE 87

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                 P    + T      ++ ++EL+     G S   LI P + ++++++   F+   
Sbjct: 88  FTAYALPISVMLSTLLTYGRLSNDSELIAFRGCGVSLYRLIVPAVVMSLVVTGVTFLVSE 147

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI------------KISKYNPN 167
           ++ P        +  +        +  +++F+   + + +              ++    
Sbjct: 148 LVVPAANYRATAILVEYLQEEHPYWQNKDIFYPDYEQVVLPNGEKEKRLKHLFFAEQFDG 207

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             L+ + +++  + + ++I  + S + +   +     DG +++ +P +       F+   
Sbjct: 208 QNLKTLTVLEWLEERLNRIVVSDSATWNGQEETWDFFDGTIYQLAPDASYKEAYPFEHRQ 267

Query: 228 LQTESA--NSSTIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLFPVI 284
           L    A    +       + N+                + L  ++    ++L      V+
Sbjct: 268 LPLTKAAFEFALQGRDPYEMNIIQARQYMKILKMMGDDKKLRMFQVRIQQKLAFPFICVV 327

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL-YLFL 343
           FG++            Q  +     +S+ I F  +     I            +  +L  
Sbjct: 328 FGVVGSALGSMPQ---QMSRATGFGLSVVIIFSYYLLGFLIGSLGLMGLISPVLAGWLPN 384

Query: 344 FCISSIFLLMIKK 356
               ++   ++ +
Sbjct: 385 ILGLAMGGWLLYR 397


>gi|253991456|ref|YP_003042812.1| hypothetical protein PAU_03983 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782906|emb|CAQ86071.1| similar to putative membrane protein yjgq of escherichia coli
           [Photorhabdus asymbiotica]
          Length = 358

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 119/355 (33%), Gaps = 2/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I ++ LM+   +V ++ +I+ + ++  V     +       +   +P  + +
Sbjct: 5   LDRYIGRTILQTILMTLFMLVSLSGIIKFVDQLRKVGQGEYTTISAGLYALLSVPKDIQI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++   +EL+++  +G +R+ +   V+  AI L I   I    + P
Sbjct: 65  FFPMAALLGALLGLGALATRSELVVMQASGFTRMQVAGSVMKTAIPLVILTMIIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+     +     + ++ +   D        +            + D + 
Sbjct: 125 QGEQMARNYRAQKMFGGSLVSTTKGMWAKDGADFIYIQRVMSDTEIKGVNIYHFNDDKKL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTIVLKA 242
             + YA S   D +     L+  E    +   K     +    +  +        + L  
Sbjct: 185 LSVKYADSAVYDENNDLWKLSQVEESDLTDSKKITGSQRISADWKTRLTPEQLGVVALDP 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              ++S L     +      +    Y+    K++   L   +  L+++            
Sbjct: 245 EALSISGLYQ-YISYLKQSEQESGRYQLNMWKKIFAPLSVAVMMLMALSFIFGPLRTVPM 303

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I+L   F +       +  +   P  +  L   L  ++    L++K++
Sbjct: 304 GVRIITGITLGFLFYLLNEIFGPLSLVYSMPAVLAALLPSLLFLTLSIYLLLKRQ 358


>gi|317494175|ref|ZP_07952591.1| inner membrane protein yjgQ [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917948|gb|EFV39291.1| inner membrane protein yjgQ [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 356

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 115/356 (32%), Gaps = 2/356 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI R I  + + +   +V ++ +I+ + ++  V     S       +   +P  
Sbjct: 2   LGVLDRYIGRTIFSTIMATLFMLVSLSGIIKFVDQLRKVGQGDYSAAGAGLYTLLSVPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     L  + + +EL+++   G +R+ +   V+  AI L I        
Sbjct: 62  IEVFFPMAALLGALLGLGMLAQRSELVVMQAAGYTRMQIASSVMKTAIPLVILTMAIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+     +   A+ Q+        +   +  D   +I I +     ++QG+ I    +
Sbjct: 122 VAPQGEQAARNYRAQ-QMYGGSLLSTQTGLWAKDGTDFIFIQRVTGEKSIQGVSIYSFDN 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +     + +     Q  +    E +         S      +           + +
Sbjct: 181 ERHLQKLRYANSATFEGHQWKLSQVEESNLTDSKRITGSQTLNGVWKTNLTPDKLGVVAM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  ++S L +          +    Y+     ++   L   +  L+++          
Sbjct: 241 SPDSLSISGLYH-YVKYLKQSGQESSRYQLNMWSKIFAPLSVAVMMLMALSFIFGPLRSV 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                    IS    F V       +  +   P  +  +   L  +     ++++K
Sbjct: 300 PMGVRVLTGISFGFFFYVLDEIFGPLSLVYSVPPVLGAILPSLLFLLISVYMLLRK 355


>gi|153834578|ref|ZP_01987245.1| inner membrane protein YjgP [Vibrio harveyi HY01]
 gi|148869021|gb|EDL68066.1| inner membrane protein YjgP [Vibrio harveyi HY01]
          Length = 366

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 121/357 (33%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + +  +   S       ++  + G  +P +  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFLSQKFISVLADASDGDIPAGLIFSVVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     L++  L+LAI+ S     +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALYLAIITSGVAAFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +  ++QL  +     +   L++  F    D   +       ++TL  +F+   R   
Sbjct: 122 PWSQDRVEQLYEQVAAENSVDLLKKGQFQGTPDGSSVVFIDDIKDSTLSNVFVAQMRPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +           +   +   RQ I +++G  +   P   +  I KF  Y           
Sbjct: 182 SILPSVMFSSSGEVKELSDGRQIITMHEGTRYEGVPTRVEYMITKFDQYEGLIGQREVKQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                     + L+                 ++E   R++ +   V   L++++     A
Sbjct: 242 KGRDWEAYPTADLI----------GHPDPEAQAELQWRISLF---VCIPLLTMLVIPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +  ++ +   +  ++ I    F   S     + ++      + ++      + + ++
Sbjct: 289 VNPRQGRFAKMGPAILIYLAYFLAISATKSAL-EDGAIPAAIGMWPINAMLLIVAIL 344


>gi|332665471|ref|YP_004448259.1| permease YjgP/YjgQ family protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332334285|gb|AEE51386.1| permease YjgP/YjgQ family protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 365

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 116/357 (32%), Gaps = 6/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  + YI++    +F  + L  + IA ++   +++        +   I+L+     +  +
Sbjct: 6   KILDWYIIKKFLSTFFFTVLIFLMIAVILDFSEKVEKFIEEPITTREIVLQYYPSFMLWI 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              +   C  +      + M  ++E++ I N G S   L++   F A  L++   +  + 
Sbjct: 66  GGQLWSVCTLIAVIFFTSRMAYSSEIMSIFNAGVSFNRLMRSYFFGAAFLTLLYLLCTHY 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           I P      + +  K            N+   +  +  + I  Y  +++    F I   +
Sbjct: 126 IMPVGEKYRQDIVHKYIDKSDDKGKTTNIHLFVAPNTKVFIGFYRKDDSTARDFRIEHFK 185

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM--KFKSYTLQTESANSST 237
           + Q      A       + +   L D   H  + + +D+ +   + K  TL     +   
Sbjct: 186 NQQLVSYTKADRAEYLPETRKWRLWDYSSHSFNGLKEDLKMHLAESKDTTLSLYPEDFVD 245

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              + +      L+                Y  E ++R    +   I   I +  A    
Sbjct: 246 YSSQQSMMTTPRLMKYIRQQNERGASNTRKYLFELYRRTADPVTIFILTFIGMAIA--SR 303

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            VR     H        +  VF      +  + Q        +L     + + L +I
Sbjct: 304 KVRGGFGFHLALGIGVGAIFVFLSKFTNVFALGQTIPVWLGAWLPNLVFAFVALRLI 360


>gi|82701536|ref|YP_411102.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
 gi|82409601|gb|ABB73710.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
          Length = 358

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 131/366 (35%), Gaps = 17/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R +   F++  + +  +     + + +    + +  L  +L++        
Sbjct: 1   MKIIERYITRELLIPFMVVTVILATLFASFSMARFLAGAVTDSLGLIPVLRLVFLKTLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     L  ++R+ E++++ + G S   +I  VL +AI + +   +    
Sbjct: 61  LEVLMPIALYVAVIMGLGRLHRDQEIVVLRSAGVSEHRIIYAVLIVAIPMGLISGLFSIF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSR 179
             P        L+A+A+  L         F+  +     I +   + +    G       
Sbjct: 121 ARPWAYEESYLLNAQAEAELNTDRFRAGRFYGSEKKGRVIYVQAKDSSGKQMGEVFHYLN 180

Query: 180 DTQTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              + +I  A+       +   R  I L DG ++R S   K  ++++F+     T+S N 
Sbjct: 181 KHDSSEIILAKKAHQPELVFGQRPQIHLLDGSIYRLSHTGKGDTVVQFEKLVYFTDSGNV 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +    KA             +             +E   RL++ L  ++  LI++  +  
Sbjct: 241 TDYRRKA------------ASTAALMQSDQPRDTAELQWRLSRPLATILLALIAVPFSRA 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                +  K + +   +   + +  G +    +         + +L+   +     L+  
Sbjct: 289 SPRQTKGDKTYYLAALVFAIYYILSGLAQTWVEQGTIGRVPGVWWLYAVMLLFAISLLSP 348

Query: 356 KKYTKI 361
             + K+
Sbjct: 349 GFWRKL 354


>gi|56697305|ref|YP_167671.1| YjgP/YjgQ family permease [Ruegeria pomeroyi DSS-3]
 gi|56679042|gb|AAV95708.1| permease, YjgP/YjgQ family [Ruegeria pomeroyi DSS-3]
          Length = 365

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/358 (11%), Positives = 112/358 (31%), Gaps = 10/358 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y  R   +SFL+  L  + +  +I +++++        S+  L+ ++    P  + 
Sbjct: 2   ILDRYFARRFIQSFLVIGLVFLGLVLLIDLIEQLRRFEGFEVSMGQLVGLTLLNAPAAIS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   + R++EL++    G S I  +   + +A+++ +    + N I 
Sbjct: 62  EILPLLMILSTIVLFVGLARSSELVVTRAIGRSGIRALVGPVLVALVIGLLAVTTLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR------LDDDLYIKISKYNPNNTLQGIFIV 176
                  + L+   +          +              +           TL  + I+
Sbjct: 122 AATAVRYQTLADTYRNGGPSVLSLSDEGLWLRQGDAGGQSVIHATGFGGDGVTLFDVTIL 181

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 + +       +   D + ++        K   + + + +      + T      
Sbjct: 182 SYAPDGSAQRRTIAESAQLQDGKWLLQKAKVWPLKVGQNPEANAVYHDRIEMPTSLTQER 241

Query: 237 TIVL-KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                   +    + L              + ++      L + LF V   L+       
Sbjct: 242 IRDSLGRRETVSIYDLPQTIEQLQQAGFSTKRHKVWLQVELARPLFLVSMVLVGAAF--T 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
               R       +  ++ + F +++  ++    + +N      L  +   +++I L  
Sbjct: 300 MRHTRFGGTGLAVLSAVLLGFTLYFTRNFAQ-ILGENGQIPVALAAWAPPVAAIMLTF 356


>gi|146297810|ref|YP_001192401.1| permease YjgP/YjgQ family protein [Flavobacterium johnsoniae UW101]
 gi|146152228|gb|ABQ03082.1| permease YjgP/YjgQ family protein [Flavobacterium johnsoniae UW101]
          Length = 362

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 123/364 (33%), Gaps = 10/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YIL+    +F +  L  + I  VI + +++N +  +      +           
Sbjct: 2   LTIIDKYILKRYLATFSVMILLFIPIGIVIDVSEKVNKMLENKIPFTQIAIYYYNFTVYF 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +      + +  NTE++ I ++G S    ++P +  A ++S+F+ +    
Sbjct: 62  ANSLFPIFLFLSVIWFTSKLANNTEIIAILSSGISFTRFLRPYIIGASIVSVFVLLMGFF 121

Query: 121 IEPK----CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           I P       +            L             D D     S    + T     + 
Sbjct: 122 IVPAASEGFNNFRYTYLKGNGKQLMRGENTNVFRQINDHDFIFVNSFNEESKTAFNFTLE 181

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                +      A     D  ++   L D        ++  I     K+   + E A+ +
Sbjct: 182 HFEKEKLTYKITASRIKWDPKKKIYTLYDYTKRTVGDLNDVIEKAPEKNVGFKFELADLT 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +V  A    L  L++            + TY    +K+ +  +   I  +I++      
Sbjct: 242 PVVYIAETLTLGKLIDFIEKERKRGSGNINTYLVVLYKKYSVPVSAFILTIIAVAV---S 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           ++ R+      + I ++I+F   +    F  +  K   +P         +F I +++LL 
Sbjct: 299 SMKRRGGMGMNLAIGIAIAFSFVFFDKIFGTLAEKSTFSPLLAVWFPNIVFGILAVYLLR 358

Query: 354 IKKK 357
             K+
Sbjct: 359 NAKR 362


>gi|170077642|ref|YP_001734280.1| YjgP/YjgQ permease superfamily [Synechococcus sp. PCC 7002]
 gi|169885311|gb|ACA99024.1| putative permease, YjgP/YjgQ family superfamily [Synechococcus sp.
           PCC 7002]
          Length = 378

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 133/364 (36%), Gaps = 19/364 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTV 60
              + YI+  +   FL        +   I  + + +  V ++  +  I  +I    +P  
Sbjct: 9   SLLDRYIMAQLVGPFLFGLGIFTSLGLTIGVLFEVMRNVVANEITWAIAFQILALRLPEF 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    + T    +S++  +E++ + + G   + L+ P L L +L++   F   + 
Sbjct: 69  LVLGLPMATLLGTLTAYSSLSSFSEIIALRSVGLPPLRLMLPGLLLGLLITGITFGLNDW 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-----------YIKISKYNPNNT 169
           I P+       ++  AQ   T  Y E+N+ +     +            +  ++      
Sbjct: 129 IVPQTTKQASTIANIAQGEATIDYQEKNIIYPEYQRVKTATGNREILKTLFYAETFDGTQ 188

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           +  + I+D     T +I  A +   + + Q  ++ DG +++         I +F++  L 
Sbjct: 189 MNNLTILDRAAVDTQRIITAAAAQWNANEQGWLVQDGSIYQIGANGSFSDIEQFETNFLN 248

Query: 230 TESANS--STIVLKANDQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
              A    +T   + N+  L  +     +   +     + T +    ++ +     ++F 
Sbjct: 249 LSDAPLILATRCQRPNEMTLQVIDVCLESLKLSRNERRIRTLQVRKQEKFSVPFVCIVFA 308

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
           ++      +        +   + +S++I F  ++  S I   +       P +  +   +
Sbjct: 309 MVGSAIGLRPQNS---SRATSVGLSVAIVFA-YYLISVISSSMGVWGTITPFMGTWFPNL 364

Query: 347 SSIF 350
             + 
Sbjct: 365 LGLV 368


>gi|283834897|ref|ZP_06354638.1| membrane protein, YjgP/YjgQ family [Citrobacter youngae ATCC 29220]
 gi|291069157|gb|EFE07266.1| membrane protein, YjgP/YjgQ family [Citrobacter youngae ATCC 29220]
          Length = 360

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 112/354 (31%), Gaps = 2/354 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +    P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDAMGAGLYTLLSAPKDIQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+     +    ++ L+ +  D                      +   + 
Sbjct: 127 QGEQMARNYRAQQMYGGSLLSTQQGLWAKDGDSFVYIERVKGDAELGGISIYSFNDKRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S + D +++   L+  +      P     S     ++           + L  
Sbjct: 187 QSVRYAASATFDPEQKIWRLSQVDESNLQDPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKVFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  IS    F V       +  +   P  I  L            LM++K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLMLRK 359


>gi|187734829|ref|YP_001876941.1| permease YjgP/YjgQ family protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424881|gb|ACD04160.1| permease YjgP/YjgQ family protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 363

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 128/364 (35%), Gaps = 8/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRIN-LVSSSTESLNILLKISGYLIPT 59
           MK  + YI R +     +  + +  +  +  + + +  L+  +   ++I+L+    +IP 
Sbjct: 1   MKILDRYIARQLLGVTALGVMALSALLLLGNLFKELRPLLVENKAPISIVLEFIFQVIPF 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L    P+ F      V   +  + EL  +  +G S   L  P + + I LS   +    
Sbjct: 61  SLMFSIPWGFLTAVLLVYGRLASDNELTSMRMSGMSLWRLSAPAIAIGIALSGLCYWINI 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I P+ + +I +L  KA        L E       D+L I I K   +          + 
Sbjct: 121 DIAPRAKQSISELLIKAASINPKGLLNEGQAITKFDNLEIYIDKRVDDVIHGMHIYQKAD 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV---HRKSPISKDISIMKFKSYTLQTESANSS 236
           D       +++  ++D   +  IL    +               +      L      S 
Sbjct: 181 DKSPSVAMHSERVTMDFSPEKKILTLHLINPLITTQEEGSISQSVTMDEMPLSINLDKSR 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +  +KAN      +            +    + +E  +R +  L  ++F LI +  A   
Sbjct: 241 SRRIKANRFTNREIREALDTPGYLDKKQTTEFATELPRRASFSLACIVFALIGVPLAIN- 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R++       + + I+  +++          +N   +P + L+L  I ++ + +   
Sbjct: 300 --TRRKDTSTGFALGILIA-SLYFLALIFADLSRKNDTMLPYILLWLPNIITVAVALHLH 356

Query: 357 KYTK 360
           K  K
Sbjct: 357 KRAK 360


>gi|74316599|ref|YP_314339.1| hypothetical protein Tbd_0581 [Thiobacillus denitrificans ATCC
           25259]
 gi|74056094|gb|AAZ96534.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 359

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 122/359 (33%), Gaps = 14/359 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            +   + R +G +       ++ IA VI  ++ +  V+    +   +    G+ +   LP
Sbjct: 2   LYRRALTREMGLATGAVLTVLIAIALVILFIRLLGDVARGELANEAVFAFLGFSLLYFLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++            L+ M R++E++I  N G S    ++PVL  A+ LS+ + +   ++ 
Sbjct: 62  VLMTISLFAGVLMPLSRMWRDSEMVIWFNAGLSLAQWLRPVLAFAVPLSLVILLLTLVLN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  ++         +     + +   LF        +   +     T     +       
Sbjct: 122 PWLQAKKNDYRQDLKARSESALIAPGLFAESGAGERVYYVESLNPLTGIVRNVFMQSRID 181

Query: 183 THKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                          +    + ++   G  +  +P + D  +++F+ Y ++ +   +   
Sbjct: 182 GQLGLVVAREGDHTELPDGSRYLVFRQGRRYEGTPGTLDYRVVEFERYWMRLDPVATGGR 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                 ++   LL           +     R+E   RL   L  ++  +++I  +     
Sbjct: 242 DTNIRQKSAGDLL----------ADPAPAARAELLWRLGVPLSALVLAVMAIPLSFVNTR 291

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            R+   +    +   +   +       + +   +P+        +  +++  L  ++ +
Sbjct: 292 ARRSYGLVTALLLYFVYNNLLSLTQAWVAQGRFDPWAGMASAHLVMLLAAAGLFYLRSR 350


>gi|238897462|ref|YP_002923139.1| putative permease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465217|gb|ACQ66991.1| putative permease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 367

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 118/352 (33%), Gaps = 3/352 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YI R I  + +M+   +V ++ +I+ ++++  V     S+      +   +P  + 
Sbjct: 5   ILDRYIGRSILNTIIMTLFMLVSLSGIIKFIEQLRKVGEGNYSVFAAAIYTLLSVPNDIM 64

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +     L ++   +EL+++  +G S + ++  V+  AI+L +   I    + 
Sbjct: 65  IFFPMAALIGGILGLGALATRSELVVVQASGFSHMQIVLSVMKTAIILFLLSIIIGEWLA 124

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P    T      K  +        ++  +  D   +I I++   ++ L G+ I       
Sbjct: 125 PLADQTASHYRTKM-IYGGSVISTQSGIWAKDKSDFIYINQVINHHELSGVHIYHFDAHD 183

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                   + +I       +    E +         S    + +           + +  
Sbjct: 184 RLISIRYAATAIFEKGAWQLSQIDESNLSDTKKIQGSQTLSEKWETSLTPYKLGIVAMDP 243

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++  L +          +  + Y  +  +++       +  L+S+            
Sbjct: 244 DSLSIMGLYD-YVKYLKQVGQDSDRYELKMWQKIFSPFSITVMILLSLSFIFGPLRSTAT 302

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFLLM 353
                  I     F +       +  + Q +P     L   LF   S++LL+
Sbjct: 303 GLRIVTGICFGFVFYLLDKIFGPLSLLYQFSPILGAALPSVLFFSISLYLLL 354


>gi|153801086|ref|ZP_01955672.1| membrane protein, putative [Vibrio cholerae MZO-3]
 gi|124123319|gb|EAY42062.1| membrane protein, putative [Vibrio cholerae MZO-3]
          Length = 354

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 114/347 (32%), Gaps = 19/347 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +     L  +     +   L++  F R  D   +       N  L  +F+       
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +        +      +   RQ I L DG  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LLN                ++E   R++     V   L++++     A
Sbjct: 242 AERDWEALPTLSLLN----------NADRRAQAELQWRISL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           +  ++ +   +  ++ I    F   S     I ++     I+ L+  
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALSATKSAI-EDGSLPVIIGLWPI 334


>gi|262166531|ref|ZP_06034268.1| predicted permease [Vibrio mimicus VM223]
 gi|262026247|gb|EEY44915.1| predicted permease [Vibrio mimicus VM223]
          Length = 366

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 117/357 (32%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASIAAFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +    QL  +     +   L++  F R  D   +       N  L  +F+       
Sbjct: 122 PWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLHNVFVAQLAPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +               +   RQ I L +G  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSNSGDVKELSDGRQIITLYNGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LL                 ++E   RL+     V   L++++     A
Sbjct: 242 SGRDWEALPTLSLL----------KNSDLQAQAELQWRLSL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +  ++ +   +  ++ I    F   S     I ++     I+ L+    + +   ++
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALSATKSAI-EDGSLPVIVGLWPVNAALLIAALV 344


>gi|237740743|ref|ZP_04571224.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|229422760|gb|EEO37807.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
          Length = 359

 Score =  106 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 116/352 (32%), Gaps = 1/352 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  +IF+   +  
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRAILKPILAIAIGAAIFIVFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    +K +  K         L+E  F    D   I + K   +   + I   +   
Sbjct: 121 IIPRSFIKLKYVGTKIAYENPVFQLKEKTFIDNLDQYSIYVDKVESDGKAKNIIAFEKPQ 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +T                +I+L   +        K      F    +         + L
Sbjct: 181 DKTKFPMVLTGEEAFWKDNSIVLKQSQFISFDENGKKNLTGTFDEKRVVLTPY-FENLNL 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K  D     + +   N      E +  Y+ E  ++L      V   +I    +     + 
Sbjct: 240 KIKDVEALSITDLIKNIRKVDAEEVLKYKIEIFRKLALIFSTVPLAVIGFCLSLGHHRIS 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           ++       I +            +    + +P+        L  I    L 
Sbjct: 300 KKYSFVLAMIIIFAYIIFLNIGIVMASAGKLHPFIATWTPNVLLYILGYKLY 351


>gi|327484988|gb|AEA79395.1| Predicted permease [Vibrio cholerae LMA3894-4]
          Length = 366

 Score =  106 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 114/347 (32%), Gaps = 19/347 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +     L  +     +   L++  F R  D   +       N  L  +F+       
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +        +      +   RQ I L +G  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYEGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LLN                ++E   R++     V   L++++     A
Sbjct: 242 AERDWEALPTLSLLN----------NADRRAQAELQWRISL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           +  ++ +   +  ++ I    F   S     I ++     I+ L+  
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALSATKSAI-EDGSLPVIIGLWPI 334


>gi|254510403|ref|ZP_05122470.1| permease, YjgP/YjgQ family [Rhodobacteraceae bacterium KLH11]
 gi|221534114|gb|EEE37102.1| permease, YjgP/YjgQ family [Rhodobacteraceae bacterium KLH11]
          Length = 382

 Score =  106 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 117/355 (32%), Gaps = 11/355 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y  R   +SFL+     + +  +I +++++    S   S   LL+++    P  + 
Sbjct: 18  ILDRYFARRFVQSFLVIGGIFLTLMILIDLIEQVRRFDSVDLSFGQLLQLTLLNTPAAIS 77

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   + R++EL++    G S I  +   +F+A+++  F     N I 
Sbjct: 78  EMLPLLMILATIALFVGLARSSELVVTRAIGRSGIRALLAPVFIALMIGGFAVALLNPIA 137

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL-------QGIFI 175
                  ++L+   +   + +         L        S  +   T+         + I
Sbjct: 138 AATSEEFQRLADGYRNQGSSALSISGEGLWLRQASASGQSVIHATGTVNGDDFALHDVTI 197

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                        A   +   +    +        +  ++ + +    +   L T     
Sbjct: 198 TTFSSDGKPNQQIAARQADLENGYWTLRQAKVWTLEDDLNPETNATTHEVLNLPTTLTRD 257

Query: 236 STIVLKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
             +       ++S + L    ++        + Y      +L + LF V   LI      
Sbjct: 258 RILDTLGQQDSVSVYDLPQLISDLREAGFATKQYEVWLQVQLARPLFLVSMVLIGAAF-- 315

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
               VR       +  ++ + FG+++  ++    + +N      +  +    + I
Sbjct: 316 TMRHVRFGGTGIAVLTAVLLGFGIYFIRNFAQ-ILGENGQLPIFVAAWAPPFAGI 369


>gi|254477617|ref|ZP_05091003.1| permease YjgP/YjgQ [Ruegeria sp. R11]
 gi|214031860|gb|EEB72695.1| permease YjgP/YjgQ [Ruegeria sp. R11]
          Length = 367

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 113/360 (31%), Gaps = 12/360 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y  R   + F + C  ++ +  +I + ++I    +   S   L  ++    P  L 
Sbjct: 2   TLDFYYARRFLQWFAVICAVLLTLVMLIDLNEQIRRFDAQDLSFGQLFGLTLLNAPAALS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILL--------SIFL 114
              P    + T  +   + R++EL++    G S I  +   + LA  +        +  +
Sbjct: 62  EFLPLIMILTTIVLFVGLARSSELVVTRAIGRSGIRALAAPVVLAAFIGLLAVSTLNPIV 121

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
             + N       +      A   L     +L +              S    + TL G+ 
Sbjct: 122 AATSNHYRDLAETYRNGGPAALSLTGEGLWLRQGGAQGQSVIHAKGYSGDVEDVTLLGVT 181

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           I+                +       ++ N       + ++ + +  +  S  L T   +
Sbjct: 182 ILSYGPEGRPIRQTVARSATLDGSDWVLTNAKVWPLVTGVNPETNATEHASLRLSTTLTS 241

Query: 235 SSTIVLKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                       +S + L              + Y       L + LF +   L+     
Sbjct: 242 ERIRDTLGTATGISVYDLPATIRELAEAGFSTKRYEVWLQVELARPLFLIAMVLVGAAF- 300

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                 R       + +++ + FG+++  ++    + +N      L  +   +++I L M
Sbjct: 301 -TMRHARFGGTGLAVLMAVLLGFGLYFLRNFAQ-ILGENGQIPVALAGWAPPVAAILLTM 358


>gi|329118129|ref|ZP_08246841.1| YjgP/YjgQ family permease [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465789|gb|EGF12062.1| YjgP/YjgQ family permease [Neisseria bacilliformis ATCC BAA-1200]
          Length = 356

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 117/356 (32%), Gaps = 4/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+   Y++R +    L +   ++ +     I+     +     +   + +     IP  
Sbjct: 1   MKTIPRYLIRQLSVMSLYAMFALLALYSFFDIVAEAGGIGEGGYTAGKMAQYVFLQIPDH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    + +   L+ +  N+EL +I  +G S   L+   L   ++ +    +   +
Sbjct: 61  AYQLMPLAVLIGSLLALSRLAANSELTVIKTSGMSTANLLTVFLIFGLIFATATALLGEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P      + L   A+     +       +  + +  + + +  P+ TL+GI      D
Sbjct: 121 AAPAANRYAENLKTTAKNGKIST--GAEGLWIKEQNSIVNVREMLPDQTLRGIKAFRHND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +    +         L +                + +++     S     +++
Sbjct: 179 AFQLIESWQADAATVAPDGTWRLENVRRSILGGERVRTERHERENWQAGIRSGLLDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  +L+ L      +     +  + YR E+ ++L      V+   ++     + A   
Sbjct: 239 SPDQMSLAALT-AYIAHLEENRQKTDLYRIEWWRKLMYPAATVVMAFVAFAFTPQSARHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                    I L ++F           ++   P ++  + L     ++  + +I++
Sbjct: 298 NMGLKLFGGICLGLAFHFAGRLFGFTSRLYGIPPFLAAV-LPTLLFAAWAVWLIRR 352


>gi|294648981|ref|ZP_06726429.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825116|gb|EFF83871.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 366

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 118/363 (32%), Gaps = 16/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    Q+++     +       +LL I  Y +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVTALLTLIIMGGQLIKIFGRAAQGRLDGGVLLSIIAYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + +L +  +  I   +      
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRNQLTRLLLPMTAVFLIVQAVLMCWGA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD--SRD 180
                  + L     +   F  +    F           S       L+ IF      R+
Sbjct: 122 SAGIRGYQSLMQTQAVRAGFDLVRPKEFISSGSYTIYAGSLSEDRKNLKDIFYYYKSDRE 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAII-LNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +  ++  A+      I+ D  +++ L  G  +   P     +  +F+SY L+ E+    
Sbjct: 182 DKPDQMILAKEATRVEIENDTASVVDLVQGRRYEIYPNQPRYTQAEFQSYRLRLENDKDV 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +  +      L    ++   R         E   R+      V+   +++  ++  
Sbjct: 242 NFESEDVEALSMSKLWQKRDDFVVRG--------ELGWRIFGPFVMVVALFLAVALSEVS 293

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +    I      +  +    +      ++         + L    +  L   K+
Sbjct: 294 P--RQGRYYRLIPAIFIFASLIVLMIAIKTRISKEELDIWAYPAVLLIYGIAAALFTRKQ 351

Query: 357 KYT 359
           K  
Sbjct: 352 KLA 354


>gi|90580731|ref|ZP_01236534.1| putative permease [Vibrio angustum S14]
 gi|90437999|gb|EAS63187.1| putative permease [Vibrio angustum S14]
          Length = 366

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 117/359 (32%), Gaps = 21/359 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R   +S L     +  +    + +  +   +  +   +++L   G  IP++  
Sbjct: 2   IIVRYLTRETLKSQLAVLFVLFLVFISQKFISILADATDGSIPSDLILTFMGLSIPSMAL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG  +  L++  L LA++      ++   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGMGKKLLLQSALALAVITGAIAAVNSFWVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSY----LEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           P  +  I+QL  + +   T +       +             I+          +  + +
Sbjct: 122 PWSQEHIEQLKEETKAGPTLNMLVKGTFQPAPNGSGVIFIDNITDKGSKLHKVFVAQLKA 181

Query: 179 RDTQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            DT    +  A +G    +   RQ + LNDG  +   P   + SI  F  Y         
Sbjct: 182 TDTLQPSVIVADNGTVKELSDGRQMLELNDGARYEGVPTQLNYSITHFNDYQALIGQREV 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                    Q    L+           +     ++E   R +     +   L+ ++    
Sbjct: 242 KAGNRDWEAQPTMALI----------KDQSLAAKAELQWRFSL---VLCIPLLVMIVVPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLM 353
            A+  ++ +   +  ++ I    F   S     IE       I ++        + L +
Sbjct: 289 SAVNPRQGRFAKLAPAVLIYLAYFLAISSAKSAIEDGIIPSAIGMWPINITTLLVALAL 347


>gi|256823037|ref|YP_003147000.1| permease YjgP/YjgQ family protein [Kangiella koreensis DSM 16069]
 gi|256796576|gb|ACV27232.1| permease YjgP/YjgQ family protein [Kangiella koreensis DSM 16069]
          Length = 354

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/355 (11%), Positives = 103/355 (29%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI + I  + +M+   +  I  +  ++         +      L  S  L P  
Sbjct: 1   MNILRFYIGKTILATSVMTLFTLAIIRVLFSLIDESGDFGKGSYQFVDGLAYSLLLSPQY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L  +  ++EL ++   G + + ++   L   ++L  F       
Sbjct: 61  IYEFFPMAILIGSIAGLGLLASHSELTVMRAAGKTTMQIVGSALSYGLILIAFAIFLGEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK     + +  +A L       E+ ++ +    +         +             
Sbjct: 121 VAPKTTRMAEDIRNRAILGEQLLKAEQGVWVKDGSKMVHIDEMLGSDRMDGVSIYQFDSQ 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   I +A S  I        L +G     +    +        +    +  N S +  
Sbjct: 181 QKLESIIHAPSALI--SEGVWRLQNGYQSYLTDTGINRERFDAMEWRTNIQMDNLSVLSD 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                ++  L               ++Y   F +++ Q L   I  +++           
Sbjct: 239 DPETLDIMSLYR-YREYLANNGLDTQSYDLAFWRKIIQPLSTAIMIVLAASFVFGPMRSV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  + +   +++         +  +   P +   +       +  + L+ K
Sbjct: 298 SMGARVLVGVLTGMAYFFAVRTFGPVSLVFGMPAFFGAILPPAIFAAGAWYLLRK 352


>gi|293393092|ref|ZP_06637407.1| YjgP/YjgQ family membrane protein [Serratia odorifera DSM 4582]
 gi|291424238|gb|EFE97452.1| YjgP/YjgQ family membrane protein [Serratia odorifera DSM 4582]
          Length = 356

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 115/354 (32%), Gaps = 2/354 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++  V     S       +   +P  + +
Sbjct: 5   LDRYIGKTIFNTIIMTLFMLVSLSGIIKFVDQLRKVGQGEYSALGAGMYTLLSVPKDVEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  +   +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +    + +     Q+        +N  +  D + +I I +    N L G+ I    D + 
Sbjct: 125 QG-EQMARNYRAQQMYGGSLLSTKNGLWAKDGNDFIYIERVAGENELSGVNIYHFNDRRR 183

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            +     + +   D    +         +      +      +           + L  +
Sbjct: 184 LETVRYAATATFEDGAWQLSQVDTSDLTNEKQVTGTQTLTGVWKTNLTPDKLGVVALDPD 243

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++S L N          +    Y+     ++   L   +  L+++             
Sbjct: 244 SLSISGLHN-YVKYLKQSGQEASRYQLNMWSKIFSPLSVAVMMLMALSFIFGPLRSVPMG 302

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 IS    F V       +  +   P  +  L   L  +     L++K++
Sbjct: 303 MRVVTGISFGFLFYVMDQIFGPLSLVYNMPPVLGALLPSLLFLLISVYLLLKRR 356


>gi|206575795|ref|YP_002240776.1| putative permease [Klebsiella pneumoniae 342]
 gi|288937432|ref|YP_003441491.1| permease YjgP/YjgQ family protein [Klebsiella variicola At-22]
 gi|290512173|ref|ZP_06551540.1| permease [Klebsiella sp. 1_1_55]
 gi|206564853|gb|ACI06629.1| putative permease [Klebsiella pneumoniae 342]
 gi|288892141|gb|ADC60459.1| permease YjgP/YjgQ family protein [Klebsiella variicola At-22]
 gi|289775168|gb|EFD83169.1| permease [Klebsiella sp. 1_1_55]
          Length = 360

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 116/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLKKSGQGSYDALGAGLYTILSVPKDIQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRLQVALAVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+     +    ++ L+ +   +          +          + + + 
Sbjct: 127 QGEQMARNYRAQQMYGGSLLSTQQGLWAKDGHNFVYIERVKGNDELGGVSIYAFNPERRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   D + +   L+  +      P     S M   ++           + L  
Sbjct: 187 ESVRYAASAKFDSENKVWRLSQVDESNLTDPKQVTGSQMVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDPGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFIFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLMMRK 359


>gi|152973139|ref|YP_001338285.1| putative transmembrane protein, transport [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238892751|ref|YP_002917485.1| putative transport system permease component [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330016469|ref|ZP_08308442.1| lipopolysaccharide export system permease protein LptG [Klebsiella
           sp. MS 92-3]
 gi|150957988|gb|ABR80018.1| putative transmembrane protein, transport [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545067|dbj|BAH61418.1| putative transport system permease component [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|328528830|gb|EGF55773.1| lipopolysaccharide export system permease protein LptG [Klebsiella
           sp. MS 92-3]
          Length = 360

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 116/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLKKSGQGSYDALGAGLYTILSVPKDIQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRLQVALAVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+     +    ++ L+ +   +          +          + + + 
Sbjct: 127 QGEQMARNYRAQQMYGGSLLSTQQGLWAKDGHNFVYIERVKGNDELGGVSIYAFNPERRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   D + +   L+  +      P     S M   ++           + L  
Sbjct: 187 QSVRYAASAKFDSENKVWRLSQVDESDLTDPKQVTGSQMVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDPGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFIFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLMMRK 359


>gi|157413956|ref|YP_001484822.1| putative permease [Prochlorococcus marinus str. MIT 9215]
 gi|157388531|gb|ABV51236.1| Permease [Prochlorococcus marinus str. MIT 9215]
          Length = 403

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 129/376 (34%), Gaps = 25/376 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  I    + +      I+  +  +   I  V      L + LK+  + +P+ L
Sbjct: 27  LLDRWLLGQIIPPMIFAISAFTVISLSVGVMFDLIRKVVEYGLPLFLALKVLFFSLPSFL 86

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      ++ N+ELL + + G     +I P + L+I ++   F   + +
Sbjct: 87  VLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIIAPAIALSIFMTGLTFYFNDNL 146

Query: 122 EPKCRS-----------------TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY 164
            PK                      K+    ++     +   +          +I  +++
Sbjct: 147 VPKSNKLAEATLRAGIGSSFSEEEGKENIMFSRYGSRINASTKKPTKNYSQLTHIFYAQW 206

Query: 165 NPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS-IMKF 223
             N  +  + ++D       +I  A S   D    + I + G +   +P  +  +   K 
Sbjct: 207 YKNKLMGNVTLLDFSREDLQQILKADSARFDKKNSSWIFSKGSIVSITPSGQTTNIQFKE 266

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLFP 282
            +Y         + +   AN+  L   +            + +   +    ++ T     
Sbjct: 267 YTYPFVEGPMELAKVPKDANEMTLKQAIQAEKIYKKTGNIKEVRRIKVRIQEKFTLPFAC 326

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           ++FGLI            +  K     +S+ +   +++  S+I   +       PI   +
Sbjct: 327 LVFGLIGSSLG--SKSNLRSSKSQGFGLSVIL-ILIYYVMSFIFSSLGVKGLLPPIFAAW 383

Query: 343 LFCISSI--FLLMIKK 356
           L  + S+   + +++K
Sbjct: 384 LPVLISLGGGIYLLRK 399


>gi|254360523|ref|ZP_04976672.1| possible inner membrane protein [Mannheimia haemolytica PHL213]
 gi|153091063|gb|EDN73068.1| possible inner membrane protein [Mannheimia haemolytica PHL213]
          Length = 365

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/359 (12%), Positives = 114/359 (31%), Gaps = 3/359 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI + I  +  ++   ++ +  +I+ ++    V   +         +   IP  
Sbjct: 6   MNILERYIGKTILSAIFLTLFMLIGLGAIIKFVEEFRDVGRGSYDGLKAAYYTFLTIPRD 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L ++   +EL+++  +G SR  +   V+  A+ L IF  I    
Sbjct: 66  IETFFPIAALLGSLLGLGNLASLSELVVMQASGFSRFRIGLAVMKTALPLVIFTMIIGEW 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD--LYIKISKYNPNNTLQGIFIVDS 178
             P+     + + + AQ   +    ++  + +  +       I      + +      + 
Sbjct: 126 GVPQTEQFARNMRSIAQSGGSMLATKDGFWAKDGNSFIYINHIKNEKSLDNVLIYQFGEG 185

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           ++ +  +       +   D +  +L+  E           +    + +      +    +
Sbjct: 186 QNKRELQSVLKARTANYSDEKGWVLSKVEKSTVGENQIQQAKQPDQVWQTSLTPSKLGIV 245

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            LK    ++S L +          +  + +   F +++ Q +   +  L++I        
Sbjct: 246 SLKPESLSISGLAD-YVGFLKDTGQDPKRFEITFWRKVFQPISMAVMMLLAISFIFGPLR 304

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    I I     F V       +  I           +       I   ++ KK
Sbjct: 305 SSTMGAKIVIGIVAGFMFYVANIVFGNLSLIATWLPIPVGALIPSLLCLIIVWWLLSKK 363


>gi|119944176|ref|YP_941856.1| permease YjgP/YjgQ family protein [Psychromonas ingrahamii 37]
 gi|119862780|gb|ABM02257.1| permease YjgP/YjgQ family protein [Psychromonas ingrahamii 37]
          Length = 358

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 125/355 (35%), Gaps = 17/355 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++    +S +     +V I    + +  +    +     ++++ +    +P +  
Sbjct: 2   ILLRYLMLETFKSQIGILFVLVLIFVSQKFITILAQAINGVIPADLVMTLLYLNLPQLGT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        ++  +E++ + + G S   ++K  L L+ L   F   +   + 
Sbjct: 62  LMLPISFYLAVLFAHGRLHGESEMIAMSSCGYSPNNVLKATLLLSFLTFAFAAYNSLYLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF--IVDSRD 180
           P     +  +  +AQ   + + L E  F +   +  +   + + +  L  IF        
Sbjct: 122 PLSEDKMISVIEEAQANTSSATLIEGRFHKTSGNGSVVYIEKSADKKLDKIFAAHWPEDR 181

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            Q   +  A  G +    D   + L DG+ +       +    +FK+Y +   +      
Sbjct: 182 KQAPSVLTAAEGYLESKKDGTWLTLTDGQRYAGIVGQHEFDHSEFKTYEVHIANREVQKQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V        + L + +             Y++E   R+   +  ++   +++  A    +
Sbjct: 242 VRGVQALPTAALFSVD----------NPKYQAELQWRIGIPVSILLMTFMAVPLA---KV 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             ++ +   +  +L++    F   S     IE     +  +++       + +++
Sbjct: 289 NPRQGRYSKLLPALALYLTFFLLLSTAKSLIEDGSLPVFSIWIVQISFLLLGIIL 343


>gi|308189158|ref|YP_003933289.1| Inner membrane protein yjgQ [Pantoea vagans C9-1]
 gi|308059668|gb|ADO11840.1| Inner membrane protein yjgQ [Pantoea vagans C9-1]
          Length = 358

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 38/357 (10%), Positives = 113/357 (31%), Gaps = 2/357 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YI + I  + +++   +V ++ +I+ + ++      + S       +   +P  +
Sbjct: 3   RVLDRYIGKTIFNTIMLTLFMLVSLSGIIKFVDQLRKTGQGSYSALSAGYYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++ + +EL+++   G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGALAQRSELVVMQAAGFTRMQVALSVMKTAIPLVLLTMAIGEFV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      +   A+          +  L+ +  ++          N          +   
Sbjct: 123 APSGEQMARNYRAQQLYGGALVSTQNGLWAKDGNNFIYIERIKGDNEIDGVSIYNFNDQR 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTIVL 240
           +   + YA + + D  ++  +L+  +    +              +           + L
Sbjct: 183 RLQSVRYAATATWDAAKKRWMLSQVDESNLTDPKLITGSQSLSGEWKTNLTPDKLGVVAL 242

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  ++  L +          +    Y+     ++ Q L   +  L+++          
Sbjct: 243 DPDALSIRGL-HSYSKYLKQSGQEAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSV 301

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    IS    F V       +  +   P  +  +       +    ++IK++
Sbjct: 302 SMGVRVVTGISFGFLFYVLDQIFGPLSLVYGLPPILGAILPSFAFFAISMFMLIKRR 358


>gi|46198337|ref|YP_004004.1| hypothetical protein TTC0029 [Thermus thermophilus HB27]
 gi|46195959|gb|AAS80377.1| hypothetical membrane spanning protein [Thermus thermophilus HB27]
          Length = 347

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 116/357 (32%), Gaps = 10/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+LR     F    L IV +     + + +  + +       LL+   +  P  
Sbjct: 1   MKTLDRYLLREALPLFGGGLLVIVLLFLGGAVYEVLAPLVAKGADPYTLLRYLLFRTPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  +      +L+ +  + EL  +   G  R  L+ P L L   +++  F+    
Sbjct: 61  LARGAPVAYLFALLVLLSRLGEDAELKALLALGVRRERLLLPFLLLGTAIALAAFLLGEG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+  +  + L  +  L    + L     F+      + + K           +     
Sbjct: 121 LVPQALAQGQDLLRREVLERPRALLTPGATFQDAQGRVVYVGKVEGEAIGALRVLSREEV 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +    + G + ++    I  +G   R        ++ +F+   L  +         
Sbjct: 181 LLAERG-SFRGGVLHVEEGTRITYEGSRPR--------TLARFQRGELVLKDLTFDPWQN 231

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            AN   L+ L                   + +++R  + L   +F L ++  A       
Sbjct: 232 PANRMTLAEL-RKEVQRLRQMGVRAGLEATTYYRRFAEPLAAPVFALFAVGLAFYLLGGS 290

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +   +  + +     +  +     +  +   +P+        L+    +FL +  ++
Sbjct: 291 RSLGLVGVAVLTFFYYATWSVGRIMGEQNALDPFLAAFGPNLLYGALGLFLFLGGRR 347


>gi|289678193|ref|ZP_06499083.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae FF5]
          Length = 321

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 99/319 (31%), Gaps = 4/319 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +  +   +  +  + S T +L   L       P  
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDI-SDTYTLADALSYVMLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++  ++EL I+   G S   ++  V+   ++L I   +    
Sbjct: 60  VYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMIAGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ +         L+ R  D+     +       L          
Sbjct: 120 VAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINTVQPNGLMLGVTRYRFDDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+      D     L D      +  S ++     + + +       ST+++
Sbjct: 180 RHMLTSSFAKEAHFKTD--YWELKDVATTHFNDGSTEVVNTPVERWDVALSPQLLSTVIM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                ++S L     +    +      Y   F  ++ Q    V   L++I          
Sbjct: 238 PPESLSISGL-WSYAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVF 319
              +     + +  +F + 
Sbjct: 297 TLGQRVFTGVVVGFTFRII 315


>gi|302188385|ref|ZP_07265058.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae 642]
          Length = 353

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 111/355 (31%), Gaps = 4/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +  +   +  +  + S T +L   L       P  
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDI-SDTYTLADALSYVMLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++  ++EL I+   G S   ++  V+   ++L I   +    
Sbjct: 60  VYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMIAGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ +         L+ R  D+     +       L          
Sbjct: 120 VAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINTVQPNGLMLGVTRYRFDEQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+  +   D     L D      +  S ++     + + +       ST+++
Sbjct: 180 RHMLTSSFAKEANFKTD--YWELKDVATTHFNDGSTEVVNTPVERWDVALSPQLLSTVIM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                ++S L     +    +      Y   F  ++ Q    V   L++I          
Sbjct: 238 PPESLSISGL-WSYAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +     + +  +F +          +   P  + +L     C  +  LL+ +
Sbjct: 297 TLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLLPAAACALAGVLLLRR 351


>gi|218961270|ref|YP_001741045.1| putative Permease YjgP/YjgQ [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729927|emb|CAO80839.1| putative Permease YjgP/YjgQ [Candidatus Cloacamonas
           acidaminovorans]
          Length = 442

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 145/411 (35%), Gaps = 63/411 (15%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+L+     F ++ + + F+    +I+  +NL+         + ++ G  +P +
Sbjct: 1   MKILKRYLLKEHIAPFFIALMVVTFVLLSDRIIDLMNLIIEKKLPWQTVFEVFGLSLPYM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    + T      M+ + E+  I ++G +  +LI P++  A+LL+  +    + 
Sbjct: 61  LALSIPMAVLVATILAFGRMSVDREITAIKSSGINVYSLIGPLVIAALLLTGLMVYFNHW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P     +K L  K       + ++E  F    D  Y   ++   ++ L  + I D   
Sbjct: 121 FLPDTNHKLKNLMLKIAYYKPMTIIKEKEFTNFMD--YTIYARETTDSLLTDVLIYDRSQ 178

Query: 181 TQTHKIYYAQSGSIDLDRQAI----ILNDGEVHRKSPIS-KDISIMKFKSYTLQTESANS 235
           +   +  +A+SG++           ILNDGE+H ++           F  Y +   +  S
Sbjct: 179 SHFPRTIFAKSGNVIQKDNGNSLQIILNDGEMHERNEKEVGKYQKTTFSRYIINVRNLGS 238

Query: 236 STIVLKANDQNLSFL-------------------------LNPNPNNPNYRPEL------ 264
           +  + +   ++   +                         LN         P+       
Sbjct: 239 NMEMFETGYRSDREMTYNQLITAIGDHKKELQTKQQEIEELNKRIELLQKSPQNFTRNME 298

Query: 265 ---------------------LETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
                                + +   E+HK+ +     +IF LI I             
Sbjct: 299 LRRLQAMQKMVIDRTQELKELINSLLVEYHKKFSMSFAIIIFVLIGIPLGLMTRTS---- 354

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            I   F   SI F V++       ++    +  P L ++L  I  + L ++
Sbjct: 355 GIGMSFSVSSIIFLVYYIALNGGEQLADKGFMPPFLAMWLANIIFLILAVL 405


>gi|260596297|ref|YP_003208868.1| lipopolysaccharide ABC transporter permease [Cronobacter turicensis
           z3032]
 gi|260215474|emb|CBA27593.1| Lipopolysaccharide export system permease protein lptG [Cronobacter
           turicensis z3032]
          Length = 359

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 118/357 (33%), Gaps = 3/357 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  + +M+   +V ++ +I+ + ++      + +       +   +P  +
Sbjct: 4   SVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLKKTGEGSYTALGAGTYTLLSVPKDI 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L IF       +
Sbjct: 64  QIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVAASVMKTAIPLVIFTMAIGEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     + L A+     +    ++ ++ +   +          N          +   
Sbjct: 124 APQGEQMARNLRAQQMYGGSLLSTQQGMWAKDGSNFVYIERVKGENELGGISIYAFNDKR 183

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVL 240
           +   + YA S   D + +   L+  +     +P     S     ++           + L
Sbjct: 184 RLESVRYAASAKFDAEHKLWRLSQVDESNLKNPQQITGSQTLTGTWKTNLTPDKLGVVAL 243

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  ++S L N          +    Y+     ++ Q L   +  L+++          
Sbjct: 244 DPDALSISGLRN-YVTYLKASGQDASRYQLNMWSKILQPLSVAVMMLMALSFIFGPLRSV 302

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    IS    F V       +  +   P  I  L L       I L ++ K+
Sbjct: 303 PMGVRVVTGISFGFIFYVLDQIFGPLSLVYGIPPIIGAL-LPSASFFLISLWLLMKR 358


>gi|254229296|ref|ZP_04922714.1| putative permease, YjgP/YjgQ family [Vibrio sp. Ex25]
 gi|262393202|ref|YP_003285056.1| hypothetical protein VEA_002429 [Vibrio sp. Ex25]
 gi|151938220|gb|EDN57060.1| putative permease, YjgP/YjgQ family [Vibrio sp. Ex25]
 gi|262336796|gb|ACY50591.1| putative membrane protein [Vibrio sp. Ex25]
          Length = 366

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 119/357 (33%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + +  +   S       ++  I G  +P +  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFVSQKFISVLADASDGDIPAGLIFSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     L++  L+LA++ S     +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALYLALITSAVAAFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +  ++QL  +     +   L++  F    D   +       +NTL  +F+   R   
Sbjct: 122 PWSQDRVEQLYEQVAAENSVDLLKKGQFQGTPDGSSVVFIDDIKDNTLSNVFVAQMRPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +           +   +   RQ I + +G  +   P   +  I KF  Y           
Sbjct: 182 SVLPSVMFSSSGEVKELSDGRQVITMKEGTRYEGVPTRVEYMITKFDEYEGVIGQREVKK 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       L+                 ++E   R++ +   V   L++++     A
Sbjct: 242 KGRDWEAYPTVDLI----------GHPDPEAQAELQWRISLF---VCIPLLTMLVIPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +  ++ +   +  ++ I    F   S     + ++      + ++      + + ++
Sbjct: 289 VNPRQGRFAKMGPAILIYLAYFLAISATKSAL-EDGDIPAAIGMWPINAMLLIVAIM 344


>gi|238921309|ref|YP_002934824.1| hypothetical protein NT01EI_3453 [Edwardsiella ictaluri 93-146]
 gi|238870878|gb|ACR70589.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 356

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 116/354 (32%), Gaps = 2/354 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I  + +M+   +V ++ +I+ + ++  V     S+      +   +P  + +
Sbjct: 5   LDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQGDYSVAGAGLFTLLSVPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++   G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGMLAQRSELVVMQAAGFTRMQVASAVMKTAIPLVLLTMAIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+ Q+        +   +  D + ++ IS+   + TL G+ I      + 
Sbjct: 125 QGDQAARNYRAQ-QMYGGSLLSTQGGLWAKDGNQFVYISQVVNDRTLGGVSIYTLDAQRK 183

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
                  + +    +Q  +    E +   P     S      +           + +  +
Sbjct: 184 LTSLRYAASATFDGKQWKLAQVEESNLSDPKMITGSRTLSGVWKTNLTPDKLGVVAVSPD 243

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++S L            +    Y+     ++   L   +  L+++             
Sbjct: 244 SLSISGLY-YYVKYLKQSGQESSRYQLNLWIKVFAPLSVAVMMLMALSFIFGPLRSVPMG 302

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I     F V       +  +   P  I  +      +     L+++++
Sbjct: 303 VRVLTGICFGFVFYVLDQIFGPMSLVYNVPPVIGAVLPSALFLGLSVYLLLRRR 356


>gi|261253953|ref|ZP_05946526.1| predicted permease [Vibrio orientalis CIP 102891]
 gi|260937344|gb|EEX93333.1| predicted permease [Vibrio orientalis CIP 102891]
          Length = 368

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 42/356 (11%), Positives = 119/356 (33%), Gaps = 19/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     +  +    ++++ +   S      ++++      +P++  
Sbjct: 2   IIVRYLIRETLKSQLAIFFILFLVFLSQKLIKVLADASDGDIPASLVMHYVALSMPSMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++  +    +     
Sbjct: 62  LMLPLSLFLGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLAVITGLIAGFNSFYFA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +  + QL  + +   +   L++  F    D   +          L+ +F+   R   
Sbjct: 122 PYSQDKLVQLQEEVEAENSVDLLKKGQFQGTPDGSSVVFIDDIDGKQLKHVFVAQMRPRD 181

Query: 183 T-----HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +           +   +   RQ I + DG  +   P   D  + +F  Y       +   
Sbjct: 182 SILPSVSFSQSGEVKELSDGRQVIRMYDGTRYEGVPTRVDYMVTEFDQYEGLIGQRDVQR 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       L+                 ++E   R++     V   L++++     A
Sbjct: 242 KGRDWEALPTMDLM----------KNPDPRAQAELQWRISL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +  ++ +   +  ++ I    F   S     + ++     ++ ++    + +   +
Sbjct: 289 VNPRQGRFAKMGPAILIYLAYFLSISATKSAL-EDGTIPTMVGMWPINAALLLTAL 343


>gi|323496138|ref|ZP_08101198.1| hypothetical protein VISI1226_19659 [Vibrio sinaloensis DSM 21326]
 gi|323318882|gb|EGA71833.1| hypothetical protein VISI1226_19659 [Vibrio sinaloensis DSM 21326]
          Length = 366

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 121/355 (34%), Gaps = 19/355 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ +      ++ +   +       ++L I G  IP +  
Sbjct: 2   IIVRYLIRETLKSQLAIFFVLLLVFISQTFIKVLGDATDGDIPARLILAIVGLNIPQMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  + LA + +     +   + 
Sbjct: 62  LMLPMSLYLGILLTFGRLYSESEITVMNATGMGSKFLIRAAMSLAFITTALAAFNTLYLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +    QL  +     +   L+   F R  D   +       +N L  +F+   R   
Sbjct: 122 PWSQEREAQLIEQVAAESSVDLLKAGQFQRTPDGSSVVFIDSIKDNQLNNVFVAQLRPRD 181

Query: 183 --THKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                + ++ SG +      RQ I+++DG  +   P   D  + +F+ Y+          
Sbjct: 182 AILPSVMFSNSGEVKEHSDGRQMIVMHDGTRYEGIPTRLDYMVTEFEQYSGLIGQREVEA 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       L+               + ++E   R++     V   L++++     A
Sbjct: 242 KRRGWGAVPTLDLIE----------SSDLSAKAELQWRISL---FVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFL 351
           +  ++ +   +  ++   F  F   S     IE       I ++   F +    +
Sbjct: 289 VNPRQGRFAKMGPAILAYFVYFISISTTKSAIEDGNIPAAIGMWPINFALLVAAI 343


>gi|254225899|ref|ZP_04919501.1| membrane protein, putative [Vibrio cholerae V51]
 gi|125621525|gb|EAZ49857.1| membrane protein, putative [Vibrio cholerae V51]
          Length = 334

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 114/347 (32%), Gaps = 19/347 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +     L  +     +   L++  F R  D   +       N  L  +F+       
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +        +      +   RQ I L DG  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LLN                ++E   R++     V   L++++     A
Sbjct: 242 AERDWEALPTLSLLN----------NADRRAQAELQWRISL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           +  ++ +   +  ++ I    F   S     I ++     I+ L+  
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALSATKSAI-EDGSLPVIIGLWPI 334


>gi|145588807|ref|YP_001155404.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047213|gb|ABP33840.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 371

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 127/355 (35%), Gaps = 15/355 (4%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           + R +  +     L +V I     +++ +   ++   +   +L +        L ++   
Sbjct: 7   LRRELSLTTGGVFLVLVTIMITTLVIRILGFAANGAINPEDVLVLISLATLGYLAVLLTV 66

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              + T  VL    +++E+++   +G S   LI+P+L  A  L I + +    + P    
Sbjct: 67  SLFVATLIVLVRWYKDSEMIVWFASGLSISNLIRPILQFATPLIIIIALLALFVWPWANR 126

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
               +S + Q     S +    F        +   +    +  +   I  +         
Sbjct: 127 ESTLISQRFQQRDDVSMVSSGQFRESARAERVFFIEELDVDKNEVKNIFVADSKNGRVSV 186

Query: 188 YAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
              S     +     ++++L++G  +   P   D  I++F  YT +  S  +     +  
Sbjct: 187 AVASAGYIQNSEDGEKSVVLHNGRRYEGQPTQPDFRILEFTDYTTKIRSKEALAPPPRDR 246

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
           ++ +S LLN         P  +   R+E   R+   L  +   LI+I  A    +  +  
Sbjct: 247 EKTISELLNETE------PTTINPNRAELLWRIGLPLMALGLVLIAIPLAY---VNPRLG 297

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIKK 356
               +F ++ I        +   + +   +  +++ I  + L  +    +L+  +
Sbjct: 298 NYTAMFYAILIYLIYSNLLNLTQNFVSQGKFGFFVGIWPIHLLALVIATILIRNR 352


>gi|330899516|gb|EGH30935.1| permease YjgP/YjgQ [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330975730|gb|EGH75796.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 353

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 110/355 (30%), Gaps = 4/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +  +   +  +  + S T +L   L       P  
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDI-SDTYTLADALSYVMLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++  ++EL I+   G S   ++  V+   ++L I   +    
Sbjct: 60  VYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMIAGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ +         L+ R  D+     +       L          
Sbjct: 120 VAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINTVQPNGLMLGVTRYRFDDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+      D     L D      +  S ++     + + +       ST+++
Sbjct: 180 RHMLTSSFAKEAHFKTD--YWELKDVATTHFNDGSTEVVNTPVERWDVALSPQLLSTVIM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                ++S L     +    +      Y   F  ++ Q    V   L++I          
Sbjct: 238 PPESLSISGL-WSYAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +     + +  +F +          +   P  + +L     C  +  LL+ +
Sbjct: 297 TLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLLPAAACALAGILLLRR 351


>gi|225024724|ref|ZP_03713916.1| hypothetical protein EIKCOROL_01610 [Eikenella corrodens ATCC
           23834]
 gi|224942519|gb|EEG23728.1| hypothetical protein EIKCOROL_01610 [Eikenella corrodens ATCC
           23834]
          Length = 356

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/360 (12%), Positives = 118/360 (32%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y++R +G + L + L +V +    +++  ++ V     ++  L+   G  +   
Sbjct: 1   MKLLTRYLIRRLGTATLYALLALVVLFSFFEVINAVDDVGDGNYTVLTLILYVGMRLFGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +     L+ +   +E  +I  +G S   +I  V  + +L  +        
Sbjct: 61  MYTLLPLAVLIGCLAALSQLASASEWTVIRTSGASLKRIIATVASVGLLAGLLGVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      ++L   A             F +  D++   + +  P+  L GI I     
Sbjct: 121 VAPYMEQRAERLRLHAVQQTVSLGGSGLWFRQGSDNI--NVREMLPDGRLLGIRIYRYNQ 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +  +  S           L        +        +    +           +++
Sbjct: 179 HAALESAWQASEGRVNGNGTWTLKQVARTHIAAERTQTEQLASVEWPSDVGVELLGVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  +   L     ++     +    Y + + ++L   L   +  L+++    + +   
Sbjct: 239 DTDQMSARSL-KMYIDHLQSNGQQTAAYATVWWRKLLYPLICTVMALVALAFTPQSSRHG 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + I L ++F      S  + ++   P +   + L     +     +I+++  +
Sbjct: 298 NIGVRLFLGICLGLAFHFAGLLSGYVAQLSSMPPFGAAI-LPGTVFAIAAAWLIRRQEVR 356


>gi|312884631|ref|ZP_07744334.1| permease [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367723|gb|EFP95272.1| permease [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 367

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 116/353 (32%), Gaps = 19/353 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    ++++ +   +      +++       +P++  
Sbjct: 2   IIVRYLIRETLKSQFAIFFILFLVFLSQKLIRVLADATDGDIPASLVANYVALSMPSMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LIK  L+LAI+  +    +     
Sbjct: 62  IMLPLSLFLGILLTFGRLYAESEITVMNATGIGNKFLIKAALYLAIITGLLAAANAFFFA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  ++ +  L  +A        L++  F    D   +          LQ +F+   R   
Sbjct: 122 PYSQNQLVHLQEEAAAENNVELLQKGHFQPSPDGSSVVFIDDIDKKKLQNVFVAQLRPRD 181

Query: 183 T-----HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +         Y +   +   RQ I + DG  +   P   D  +  F  Y          +
Sbjct: 182 SILPSVSFSQYGEVKELSDGRQVIRMYDGTRYEGIPTRLDYMVTNFDQYEGLIGQREIKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +      L            +     ++E   R++     +   L++++     A
Sbjct: 242 KGRGLDAIPTLNLF----------GDHRPAAQAELQWRISL---VLCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
           +  ++ +   +  ++ I    F   S +   I ++     ++ ++      + 
Sbjct: 289 VNPRQGRFAKMGPAILIFLAYFLAISAMKSAI-ESGSVSAVIGMWPINGLLLI 340


>gi|152998005|ref|YP_001342840.1| permease YjgP/YjgQ family protein [Marinomonas sp. MWYL1]
 gi|150838929|gb|ABR72905.1| permease YjgP/YjgQ family protein [Marinomonas sp. MWYL1]
          Length = 353

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 120/356 (33%), Gaps = 4/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  +FL+  + ++ + + +  +++I  V +   ++  LL++  + +P  
Sbjct: 1   MTKIDKYIASSVLWAFLIVAVVLLGLDFALTFIEQIKKV-NDNYTIQSLLQVILFRLPGK 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    + T   L ++   +EL ++   G     +        +L+S+        
Sbjct: 60  LAEYIPVASLIGTLMGLGTLAATSELTVMRAAGMPIWRIGFAACQPILLVSLLGMGVSEF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P        +            L   ++ + D+D    I   +   TL GI I     
Sbjct: 120 VAPVAEQKANLIEKFKGQESGAFSLTGGVWLKADNDFVY-IDAADAVGTLYGIQIFSPDG 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q   I  A S     +     LN+      +P   +   ++  ++ +     +      
Sbjct: 179 QQLKHIITATSAQ-HTEGSQWQLNNVTETIFAPDHVEKKSLEHANWNVSITPEHLFLASQ 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           + +  +LS L N        +      Y  EF     + +  +   L+++ +        
Sbjct: 238 EPDALSLSQLKN-YQTYLKQQKLDGAQYELEFWITALRPIASLALVLVALSSVFGPLRSS 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                    + + ++F         +      P  I +    + C+ +  +L+ ++
Sbjct: 297 TMGGRIFTGVIIGLAFQNALNLFGRMSVAINFPPIIGVSIPIIICLLAGIILVRRR 352


>gi|307299316|ref|ZP_07579117.1| permease YjgP/YjgQ family protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915112|gb|EFN45498.1| permease YjgP/YjgQ family protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 1438

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 118/343 (34%), Gaps = 3/343 (0%)

Query: 13  GRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAME 72
             S  +     +    +  +    +++      ++ L  +  Y +P  + +  P    + 
Sbjct: 1   MGSIFVGLAGFIIFVSLELLYYLSDMIIRYKVGIDKLFLLIYYNLPEFIVLGIPVGILLA 60

Query: 73  TTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQL 132
              VL+ M  + EL+ +   G S   L+ P L + I+ S F ++  + + P   +   + 
Sbjct: 61  IFWVLSRMRSDNELIALQTHGISLKRLVIPFLLIGIIFSGFAYLLNDYLVPAASTKANEA 120

Query: 133 SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSG 192
            A+         L+EN+F +      I + + + +        +         +  A+S 
Sbjct: 121 MARFVYKQPEVTLKENVFMQDSQGRMIYVRRIDQDTKELKNVSIYEVSRGQVTLTTAESA 180

Query: 193 SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-TIVLKANDQNLSFLL 251
            I  ++   IL+   +++          M+F +   + +          K+  +  S  L
Sbjct: 181 VISSNK--WILSKANIYQTDESGFLGVEMQFGTAEFEIDEDIERYLASFKSPKEKTSKEL 238

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
             +            +      ++ +  + P++  L+ +  +    L  +   +   F+ 
Sbjct: 239 RDDIEAFKNTGINTSSLEVALQEKYSMSIAPLVIVLLGVPVSLMFNLQSKSWSVILTFLL 298

Query: 312 LSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           + I  G     S +  +   NP   P +    F I  + +  +
Sbjct: 299 VVIYQGSGAWLSGMGKENLINPSLAPWIPNITFSILGVIIYSL 341


>gi|91228859|ref|ZP_01262764.1| putative permease [Vibrio alginolyticus 12G01]
 gi|269966356|ref|ZP_06180442.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91187597|gb|EAS73924.1| putative permease [Vibrio alginolyticus 12G01]
 gi|269829033|gb|EEZ83281.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 366

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 119/357 (33%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + +  +   S       ++  I G  +P +  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFVSQKFISVLADASDGDIPAGLIFSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     L++  L+LA++ S     +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALYLALITSAVAAFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +  ++QL  +     +   L++  F    D   +       +NTL  +F+   R   
Sbjct: 122 PWSQDRVEQLYEQVASENSVDLLKKGQFQGTPDGSSVVFIDDIKDNTLSNVFVAQMRPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +           +   +   RQ I + +G  +   P   +  I KF  Y           
Sbjct: 182 SVLPSVMFSSSGEVKELSDGRQIITMKEGTRYEGVPTRVEYMITKFDEYEGVIGQREVKK 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       L+                 ++E   R++ +   V   L++++     A
Sbjct: 242 KGRDWEAYPTVDLI----------GHPDPEAQAELQWRISLF---VCIPLLTMLVIPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +  ++ +   +  ++ I    F   S     + ++      + ++      + + ++
Sbjct: 289 VNPRQGRFAKMGPAILIYLAYFLAISATKSAL-EDGDIPAAIGMWPINAMLLIVAIM 344


>gi|114331100|ref|YP_747322.1| permease YjgP/YjgQ family protein [Nitrosomonas eutropha C91]
 gi|114308114|gb|ABI59357.1| permease YjgP/YjgQ family protein [Nitrosomonas eutropha C91]
          Length = 357

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 125/347 (36%), Gaps = 20/347 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R +   F +  + ++ +     + + +    + T     + K+ G      
Sbjct: 1   MGIIERYISRELLLPFFVVTIILIGLFVSFSVARFLTGAVAETLGAIAMFKLVGLKTIIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P  F +   + L+ MNR+ E+ ++ + G     +I+ V  +A+ +++   +    
Sbjct: 61  LEVLVPIAFYVAVIHGLSRMNRDQEINVLRSVGYGDNQIIRTVFIIALPIAVLSGVLSIY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSR 179
             P   +    ++A+A+  L     +   F+  +     I I   +             R
Sbjct: 121 ARPWAYAESYVMNAQAEAELNTDRFQPGRFYGSEKSGRVIFIRGKDDLEKRMEGIFHYIR 180

Query: 180 DTQTHKIYYAQSGSID----LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
             +  +I  ++ G            I L DG+++R    +   S ++F+      E+  +
Sbjct: 181 TAENREIIVSREGYQQPMTQEQWPYIELLDGKIYRLGYDAARDSTVQFEKMIYFNENDQA 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                KA   +   L N                 +E   RL++    ++  LI++     
Sbjct: 241 QNYRRKAA--STQSLWNSEQPQE----------IAELQWRLSRPAATILLALIAVSFT-- 286

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
                ++ K    FI  ++ F V++  S +     +      +  ++
Sbjct: 287 -RTAPRKDKADRTFIVAALVFAVYYNLSGLAKTWVEQGVVAAVPGIW 332


>gi|15602062|ref|NP_245134.1| hypothetical protein PM0197 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720420|gb|AAK02281.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 356

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/357 (11%), Positives = 113/357 (31%), Gaps = 3/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + Y+ + I  +   + + +V ++ +I+ +++   V   T  +   +  +   IP  
Sbjct: 2   MSTLDRYLGKSILGAIFATLIMLVGLSGIIKFVEQFRSVGKGTYDIWQAILYTVLTIPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++  +G SR+ +   V+  A+ L I   +    
Sbjct: 62  IETFFPMAALLGALIALGNLASRSELVVMQASGFSRLKIGFAVMKTALPLVILTMLIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+     + + +KA    +   ++  ++ +  ++      K   ++       +    
Sbjct: 122 GIPQTEQFARDMRSKAISGGSLLSVKNGIWAKDGNEFIYI--KRITDDIALSDVYIYRFA 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                     + +        IL+       S             +             L
Sbjct: 180 ENRQLQQVKHANTATYQEGKWILHRLTESAISENEITTVNRVNAEWQTNLTPDKLGIASL 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    ++S L N          +  + +   + ++L Q L   +  ++++          
Sbjct: 240 RPTSLSISGLSN-YITFLRETGQESKKFELTYWRKLFQPLSVGVMMMLALSFIFGPLRSV 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    I     F V       +  +         L   +  +   + L+ +K+
Sbjct: 299 TAGARIVTGICFGFLFYVVNEIFGPLSLVYNVTPLAGALMPSVLFLLITWWLLSRKR 355


>gi|253991457|ref|YP_003042813.1| inner membrane protein yjgp [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782907|emb|CAQ86072.1| inner membrane protein yjgp [Photorhabdus asymbiotica]
          Length = 366

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 137/361 (37%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N+++ + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQVAILFILLLIFFCQRLVEILGAAVEGNVPANLVISLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +   +E+ ++   G  +  L+   L LA+L S    ++   + 
Sbjct: 62  LILPLSLFLGVLMTFSKLYTESEITVMHACGLGKRVLVVSALILALLTSALAAVNVIWMM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q+ A A+   + + + E  F   +D   +        +  + +F+   R   
Sbjct: 122 PWSSKYQEQVLADARANPSLAAIMEGKFKPSNDGNLVLYIGSVHGDKFKNVFLAQLRPVD 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  +  G +      +Q +ILN G  +  + + +D  I +F  Y        S  
Sbjct: 182 NQRPSVVISDGGHMVERPDGKQVVILNHGTRYEGTAMLRDFRITEFNDYQAVVGHQASVV 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K   ++++ L   N  +           R+EFH RLT  L  +I  ++         
Sbjct: 242 DGDKVEQKSIAQLWRDNDKDS----------RAEFHWRLTLVLSVLIMAMM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   S +     +     P+++++    + + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSNGGK-GKLDPLIWMWTVNGAYLMLALVLNI 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|254527024|ref|ZP_05139076.1| unclassified ABC-type transport system permease [Prochlorococcus
           marinus str. MIT 9202]
 gi|221538448|gb|EEE40901.1| unclassified ABC-type transport system permease [Prochlorococcus
           marinus str. MIT 9202]
          Length = 401

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/377 (14%), Positives = 131/377 (34%), Gaps = 27/377 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  I    + +      I+  +  +   I  +      L + LK+  + +P+ L
Sbjct: 25  LIDRWLLGQIIPPMVFAISAFTVISLSVGVMFDLIRKIVEYGLPLFLALKVLFFSLPSFL 84

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      ++ N+ELL + + G     +I P + L+I ++   F   + +
Sbjct: 85  VLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIIAPAIALSIFMTGLTFYFNDNL 144

Query: 122 EPKCRS-----------------TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY 164
            PK                      K+    ++     +   +          +I  +++
Sbjct: 145 VPKSNKLAEATLRAGIGSSFSEEEGKENIMFSRYGSRINASTKKPTKNNSKLTHIFYAQW 204

Query: 165 NPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK 224
             N  ++ + ++D       +I  A S   D    + I + G +   +P  +  + +KFK
Sbjct: 205 YKNKLMENVTLLDFSREDLQQILKADSARFDKKNSSWIFSKGSIVSITPSGQTTN-IKFK 263

Query: 225 SYTLQT--ESANSSTIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLF 281
            YT          + +   AN+  L   +            + +   +    ++ T    
Sbjct: 264 EYTYPFVEGPMELAKVPKDANEMTLKQAIQAEKIYKKTGNIKEVRRIKVRIQEKFTLPFA 323

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
            ++FGLI            +  K     +S+ +   +++  S+I            +   
Sbjct: 324 CLVFGLIGSSLG--SKSNLRSSKSQGFGLSVIL-ILIYYVMSFIFSSFGVKGILPAVFAA 380

Query: 342 FLFCISSI--FLLMIKK 356
           +L  + S+   + +++K
Sbjct: 381 WLPVLISLGGGIYLLRK 397


>gi|312170935|emb|CBX79194.1| beta-lactamase/D-alanine carboxypeptidase ampH [Erwinia amylovora
           ATCC BAA-2158]
          Length = 358

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 117/355 (32%), Gaps = 2/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + + +   +V ++ +I+ + ++        ++      +   +P  + +
Sbjct: 5   LDRYIGKTIFNTIMATLFMLVSLSGIIKFVDQLRKTGQGEYTVLGAGLYTLLSVPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++ + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGTLAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIGEFVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+  +  +    +  L+ +  D+        + N              + 
Sbjct: 125 QGEQMARNYRAQQLMGGSLLSTQSGLWAKDGDNFIFIERVRDDNQLSGISIYHFDPQRRL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   + D++   L   +    S   + + +      +           + L  
Sbjct: 185 KTVRYAASAKYNADKKLWELAQVDQSDLSDTQQINGNQTLSGEWKTSLTPDKLGVVSLDP 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              ++S L +          ++   Y+     ++ Q L   +  L+++            
Sbjct: 245 GALSISGLYS-YSKYLKQSGQMAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVSM 303

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  +  L       +    +++K++
Sbjct: 304 GMRVVTGISFGFLFYVLDQIFGPLSLVYNIPPILGALLPSAAFFALSVAMLVKRR 358


>gi|119503287|ref|ZP_01625371.1| predicted Permease [marine gamma proteobacterium HTCC2080]
 gi|119460933|gb|EAW42024.1| predicted Permease [marine gamma proteobacterium HTCC2080]
          Length = 363

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/360 (12%), Positives = 112/360 (31%), Gaps = 20/360 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              LY+ R +    L     +  + +  + ++ +   +  + S ++LL +  + +P+   
Sbjct: 2   RIFLYLTRDVVTHTLAVAFVLFLVVFSGRFIKYLAEAAVGSLSADVLLPVMLFKLPSFFE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  M   +E++++   G S   L   +L   + +   +      + 
Sbjct: 62  LILPLALFIAVLLSLGRMYAESEMVVLKACGISPSRLAVFLLVPGLFIMCLVAGLTMYLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI--VDSRD 180
           P+  +  ++L    + A     +    F        +  ++      +        +   
Sbjct: 122 PEGSARAQRLLDNPRNAEGLQLMAAGRFKSQRGGELVTYTERIDKAGVMHNVFVVEEQSG 181

Query: 181 TQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           T   ++  AQ   I  D    R+ + L  G  +   P       + FK           S
Sbjct: 182 TDATQVTLAQEAEIITDSATNRRYLELRGGTRYSGVPGESAYEAVAFKRLGELIPEERDS 241

Query: 237 TI-VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                + +    + LL+                R+    R++      +  +I++     
Sbjct: 242 LRASTRIDATPTADLLS----------SDNPRKRATLWWRISLPFLVPVSVVIALAL--- 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                +R +   +  +L++    F   +     +E       +L   L        L+  
Sbjct: 289 SKTDARRGRYARLGPALALFLTYFLALTQARSLMESGSGPGAMLATHLMFSLVALFLLYW 348


>gi|293610039|ref|ZP_06692340.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827271|gb|EFF85635.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 366

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 121/354 (34%), Gaps = 14/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +      +IL  I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVISLLTLIMMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + ++ + ++  +F  +    + 
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVFQSVLMLWMT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      ++L+    +   F  +    F           S       L+ IF       +
Sbjct: 122 PWGLREFEKLTTTQAVRTGFDLVRPREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAKE 181

Query: 183 THKIYYAQSGSIDLDR------QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                   +               + L  G  +   P     +  +F+SY L+ E+    
Sbjct: 182 DKPDVMILAKEATRVEVANDTANVVDLVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKDV 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  +   +  L    N+P          RSE   RL      VI  ++S+  ++  
Sbjct: 242 KFESGDVEALSTTKLFSKTNDPV--------IRSELGWRLFGPFTIVIALMLSVALSEVS 293

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
               +  ++ P     S    +       I K E + +  P + +     +++F
Sbjct: 294 PRQGRYYRLIPAIFIFSSLIVLMIAIKTRISKEELDIWAYPAVLVVYGVAAALF 347


>gi|261819787|ref|YP_003257893.1| permease YjgP/YjgQ family protein [Pectobacterium wasabiae WPP163]
 gi|261603800|gb|ACX86286.1| permease YjgP/YjgQ family protein [Pectobacterium wasabiae WPP163]
          Length = 358

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 109/355 (30%), Gaps = 2/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + + +   +V ++ +I+ + ++  V     S       +   +P  +  
Sbjct: 5   LDRYIGKTIFTTIITTLFMLVSLSGIIKFVDQLRKVGQGEYSALGAGLYTLLSVPKDIET 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  +   +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLTMAIGEWVSP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   ++     +    +  L+ +  +D                         + 
Sbjct: 125 QGEQMARNYRSQMISGGSMISTQGGLWAKDGNDFIYIERIVGDKELSGVNIYHFDEQNKL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTIVLKA 242
             + YA S   D DR    L+  +    S   +          +           + L+ 
Sbjct: 185 LSVRYAASAEFDKDRNVWNLSQVDESDLSDGKQIGGSQTLSGEWKTNLTPDKLGVVALEP 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           N  ++  L +          +    Y+     ++   +   +  L+++            
Sbjct: 245 NALSIRGL-HDYAKYLKQSGQESGRYQLNMWSKIFAPVSVAVMMLMAVSFIFGPLRSVSA 303

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                I IS    F +       +  +   P  +  +      +     L++K++
Sbjct: 304 GSRIVIGISFGFFFYLLNEIFRPLSLVYGIPPILGAVLPSSVFLFISVALLLKRR 358


>gi|146308541|ref|YP_001189006.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina ymp]
 gi|145576742|gb|ABP86274.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina ymp]
          Length = 372

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/351 (11%), Positives = 112/351 (31%), Gaps = 25/351 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   +       +L  I GY IP  L 
Sbjct: 2   IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGALDPGVLFLIMGYRIPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +  ++E+ ++  TG S+  L    +  A+++++ +      + 
Sbjct: 62  LILPLGLFLGFLLAYGRLYLDSEMTVLSATGVSQQRLTAYSMAPALIVALLVGWLSLGLA 121

Query: 123 PKC--------RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           P+                     +   F  +++        +L    S+       +  F
Sbjct: 122 PQGVASVARILNEQDALTELDTLVPGRFQSMKDGSRVTYSQELSADRSELRGVFMSEKRF 181

Query: 175 IVDSRDTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
             D    +   +  A+SG  +      + +IL +G  +   P   D  ++++ +Y +   
Sbjct: 182 SSDGSSERGITVLLAESGRQEIQADGSRYLILENGYRYDGEPGEADYRVIQYDTYGVLLP 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               +    +        L                  ++E   RL+  L   +  L+++ 
Sbjct: 242 KPEVAIEASEREAMPTRELF----------GSDDPRVQAELQWRLSIPLLVFVVTLLAVP 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
                 +  ++ +   +  ++ +    + G               P L L+
Sbjct: 292 L---SKVNPRQGRFLKLLPAIFLYMA-YLGLLIAARGALDKGRLPPALGLW 338


>gi|67924129|ref|ZP_00517574.1| permease YjgP/YjgQ [Crocosphaera watsonii WH 8501]
 gi|67854019|gb|EAM49333.1| permease YjgP/YjgQ [Crocosphaera watsonii WH 8501]
          Length = 400

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/373 (12%), Positives = 121/373 (32%), Gaps = 20/373 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPT 59
           +   + YI   +    L S   +  +   I  L  + + V  S   L    +I    +P 
Sbjct: 27  LSLMDRYIATQLINPLLFSVGLVSVLGVAIGYLSDLADKVVDSNLPLIQASEILLLKVPE 86

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                 P    + T      ++ ++EL+     G S   LI P + +++L++   F+   
Sbjct: 87  FTAYALPISVMLSTLLTYGRLSSDSELIAFRGCGVSLYRLIIPAVVMSLLVTGVTFLVSE 146

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI------------KISKYNPN 167
           ++ P        +  +        +  +++F+   + + +              ++    
Sbjct: 147 LVVPAANYRATGILVEYLQEEHPYWQNKDIFYPDYEQVVLPNGEKEKQLKHLFFAEKFDG 206

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             L+ + +++  + + ++I  + S + +   +     +G +++ +P +       F+   
Sbjct: 207 QNLKNLTVLEWLENRLNRIVVSDSATWNGQEETWDFFNGTLYKLAPDASYKEADPFEHRQ 266

Query: 228 LQTESA--NSSTIVLKANDQNLSFLLNPNPNNPNY-RPELLETYRSEFHKRLTQWLFPVI 284
           L    A    +       + N+                + L T++    ++L      V+
Sbjct: 267 LPLSKAAFEFALQGRDPYEMNIIQASQYMRILKMMGDDKKLRTFQVRIQQKLAFPFICVV 326

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL-YLFL 343
           FG+I               +     +S+ I F  +     I            +  +L  
Sbjct: 327 FGVIGSSLGSTPQ---NMSRATGFGLSVVIIFAYYLLGFLIGSLGLMGLISPVLAGWLPN 383

Query: 344 FCISSIFLLMIKK 356
                +   ++ +
Sbjct: 384 ILGLVMGGYLLYR 396


>gi|312959168|ref|ZP_07773687.1| permease YjgP/YjgQ [Pseudomonas fluorescens WH6]
 gi|311286938|gb|EFQ65500.1| permease YjgP/YjgQ [Pseudomonas fluorescens WH6]
          Length = 372

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 119/365 (32%), Gaps = 25/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   +S       L  I G+ +P  L 
Sbjct: 2   IVFRYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAASGALDPGSLFLIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A  +++ +      + 
Sbjct: 62  LILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMIPAAGVALVMAWLSLSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+     + L  K      F  LE   F  L+D   +  ++   ++      +  S+  Q
Sbjct: 122 PQGAMQFQLLLNKQDAMTEFDTLEPGRFQALNDGTRVTYTETMTDDRANLGGVFISQKNQ 181

Query: 183 THKIYYAQSGSIDLDRQAI----------ILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
                      +  D              +L +G  +  SP   D   +K+ +Y +    
Sbjct: 182 GENQKDRGISILVADSGRQEVRPDGSRYLVLENGYRYDGSPGLADYRAIKYDTYGVMLAR 241

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            + S  V   +    + L                   +E   R++  L   I  L+++  
Sbjct: 242 PDISEEVTDRDALPTASLF----------GSQELRSIAELQWRISLPLLVFIVTLMAVPL 291

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIF 350
                +  ++ +   +  ++ +        +Y    +   + P  + + ++    ++   
Sbjct: 292 ---SRVNPRQGRFLKLLPAILLYMTYLTLLTYARGWLENGKTPLVLGLWWVHAIFLTVGL 348

Query: 351 LLMIK 355
            L+  
Sbjct: 349 ALLYW 353


>gi|237799874|ref|ZP_04588335.1| hypothetical protein POR16_13650 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022729|gb|EGI02786.1| hypothetical protein POR16_13650 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 353

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/329 (12%), Positives = 98/329 (29%), Gaps = 4/329 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +  +   +  +  + + T +L   L       P  
Sbjct: 1   MVKLDRYIGKSVFLAILAVLGIILGLVSLFAFIDEMGDI-NDTYTLADALSYVFMTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L S+  ++EL I+   G S   ++  V+   + L +   +    
Sbjct: 60  VYDTLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLFLMVAGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ +         L+ R  D+     +       L          
Sbjct: 120 VAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINTVQPNGLMLGVTRYRFDDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+      D     L D      +  S  +     + + +       ST+++
Sbjct: 180 RHMLTSSFAKEAHFKTD--YWELKDVSTTHFNEGSTQVINTPEERWDVSLSPQLLSTVIM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                ++S L     +    +      Y   F  ++ Q    V   L++I          
Sbjct: 238 PPESLSISGL-WSYAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKI 329
              +     + +  +F +          +
Sbjct: 297 TLGQRVFTGVVVGFTFRIIQDLLGPSSLL 325


>gi|292486866|ref|YP_003529736.1| beta-lactamase/D-alanine carboxypeptidase ampH [Erwinia amylovora
           CFBP1430]
 gi|292900737|ref|YP_003540106.1| permease [Erwinia amylovora ATCC 49946]
 gi|291200585|emb|CBJ47716.1| putative permease [Erwinia amylovora ATCC 49946]
 gi|291552283|emb|CBA19320.1| beta-lactamase/D-alanine carboxypeptidase ampH [Erwinia amylovora
           CFBP1430]
          Length = 358

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/355 (11%), Positives = 115/355 (32%), Gaps = 2/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + + +   +V ++ +I+ + ++        ++      +   +P  + +
Sbjct: 5   LDRYIGKTIFNTIMATLFMLVSLSGIIKFVDQLRKTGQGEYTVLGAGLYTLLSVPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++ + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGTLAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIGEFVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+  +  +    +  L+ +  D+        + N              + 
Sbjct: 125 QGEQMARNYRAQQLMGGSLLSTQSGLWAKDGDNFIFIERMRDDNQLSGISIYHFDPQRRL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   + D++   L   +          + +      +           + L  
Sbjct: 185 KTVRYAASAKYNADKKLWELAQVDQSDLSDTQQINGNQTLSGEWKTSLTPDKLGVVSLDP 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              ++S L +          ++   Y+     ++ Q L   +  L+++            
Sbjct: 245 GALSISGLYS-YSKYLKQSGQMAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVSM 303

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  +  L       +    +++K++
Sbjct: 304 GMRVVTGISFGFLFYVLDQIFGPLSLVYNIPPILGALLPSAAFFALSVAMLVKRR 358


>gi|158425948|ref|YP_001527240.1| permease precursor [Azorhizobium caulinodans ORS 571]
 gi|158332837|dbj|BAF90322.1| permease precursor [Azorhizobium caulinodans ORS 571]
          Length = 363

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 102/357 (28%), Gaps = 15/357 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPTV 60
           ++   Y  R    S  M     V +  ++  L+     +     S   +  ++ Y  P  
Sbjct: 4   RTLGFYFARRFFASVTMIFFSCVGLIMLVDFLEMARRTADRDTVSAVTVALLTIYRTPAF 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + PF           +++R  EL++    G S      P L +A L+ +F     N 
Sbjct: 64  TEQLLPFAVLFGGMATFVTLSRKLELVVARAVGLSVWQFTSPALLVAFLIGVFATCVFNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSY------LEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           +    +    ++ A+     +  +                  +    +       L G+ 
Sbjct: 124 VSADFKERANRMEAEIFNTASGVFTQGTSGFWIRQQSVDGQAIIQAAASQQGGRQLTGVT 183

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           + +               +I  D    +    +  R      D    +      + +   
Sbjct: 184 VFEFDRNGKLTDRVEAKSAILGDGYWTM----KEARVLVPGSDQQTFETYLLATKLDPKQ 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
               ++     +   L +   +N          YR +    L +    V   LI+ V   
Sbjct: 240 IQESLVSPETVSFWQLPDA-ISNAEQSGFGAARYRLQLQSLLARPFLLVAMVLIAAVVGL 298

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              + R       I   +   F ++ G + +   +       PI   +   ++ IF+
Sbjct: 299 --RVFRFGGVGQTILGGVLAGFLLYLG-TKLAEDLGDAGVVHPIAAAWFPALAGIFM 352


>gi|54307698|ref|YP_128718.1| putative permease [Photobacterium profundum SS9]
 gi|46912121|emb|CAG18916.1| putative permease [Photobacterium profundum SS9]
          Length = 366

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 127/363 (34%), Gaps = 21/363 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R   +S L     +  +    + ++ +   +  +   +++L + G  +P++  
Sbjct: 2   IIVRYLTRETLKSQLAVLFVLFLVFISQKFIRILADATDGSIPGDLILTLMGLYMPSMAL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L LA++       +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIQAALLLAMITGSVAAFNSLWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQGIFIVDS 178
           P       Q+  + +  +    L +  F    D         I+          +  + +
Sbjct: 122 PWSSEQETQVMERVESDVGLDLLVKGQFQPAPDGKGVVFVNDITDKGSKLEKVFVAQIVA 181

Query: 179 RDTQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           RDT    +  A+ G    +D  RQ + L DG  +   P   D S+ +F++Y         
Sbjct: 182 RDTMRPSVMVAERGYVSELDDGRQVLDLKDGTRYEGVPTRLDYSVTEFENYQALIGQRAI 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  +      L+  +              R+EF  R++ +L      L+++V    
Sbjct: 242 REKNRDWDALPTPTLMQHSELAA----------RAEFQWRISMFL---CIPLLTMVVVPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            ++  ++ +   +F ++ I    F   S     + ++      + L+    +   + +  
Sbjct: 289 SSVNPRQGRFAKLFPAVLIYLVYFLAISAAKSAV-EDGSLPSYIGLWSINAAMFVVAIAL 347

Query: 356 KKY 358
             +
Sbjct: 348 NSW 350


>gi|262280663|ref|ZP_06058446.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257563|gb|EEY76298.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 366

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 118/354 (33%), Gaps = 14/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +       IL  I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVISLLTLIMMGGRLIKYFGVAAQGRLDAGILFSIIGYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + ++ + ++  +   +    + 
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPITLVYMVCQSVLMLWMT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      ++L+    +   F  +    F           S       L+ IF        
Sbjct: 122 PWGLREFEKLTTTQAVRTGFDLVRPREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAKA 181

Query: 183 THKIYYAQSGSIDLDR------QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                   +               + L  G  +   P     +  +F+SY L+ E+    
Sbjct: 182 DKPDVMILAKEATRVEVANDTANVVDLVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKDV 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  +   +  L    N+P          RSE   RL      +I  ++S+  ++  
Sbjct: 242 KFESGDVEALSTTKLFSKTNDPV--------VRSELGWRLFGPFTIIIALMLSVALSEVS 293

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
               +  ++ P     S    +       I K E + +  P + +     +++F
Sbjct: 294 PRQGRYYRLIPAIFIFSSLIVLMIAIKTRISKEELDIWAYPAVLVVYGIAAALF 347


>gi|325269119|ref|ZP_08135739.1| hypothetical protein HMPREF9141_0948 [Prevotella multiformis DSM
           16608]
 gi|324988506|gb|EGC20469.1| hypothetical protein HMPREF9141_0948 [Prevotella multiformis DSM
           16608]
          Length = 405

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 119/359 (33%), Gaps = 8/359 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTVL 61
             + YI+R    +++ + L I+ IA V    + ++  +        I+       IP   
Sbjct: 47  ILDWYIIRKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIVFDYYANFIPYYS 106

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            + +P    +      + +  N+E++ +   G S   L++P +   +L++   F   + +
Sbjct: 107 NLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSIKRLMRPYMISCVLIAGLTFYLNSFV 166

Query: 122 EPK---CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
            P     R   + L   ++   +   ++  +       +    ++Y        + I D 
Sbjct: 167 IPHGTVIRQNFESLYRNSKKNTSAENVQLYVSKNTTAYIQHYDNQYKRGYGFSLVKIKDK 226

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +          Q  ++   +    L++ +      + + I     K   L  E  +    
Sbjct: 227 KIVSHMTAMEIQYDTVADTKFHWRLSNWKTRTLKGLKEHIQSGASKDTVLLMEPTDLVYS 286

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        LL+      +     +  Y  EFHKR+       I  +I +      + 
Sbjct: 287 KGQQETFTSPELLDYISKQTSRGSGNVVQYEVEFHKRIAMSFSSFILTIIGLSL---SSR 343

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            R+      + I L++SF  +     +           P+L  ++  I    +     +
Sbjct: 344 KRKGGMGLYLGIGLALSFS-YIMLQTVSSTFAIQSDTPPLLAAWIPNIIFAVIAYFCYR 401


>gi|253686792|ref|YP_003015982.1| permease YjgP/YjgQ family protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753370|gb|ACT11446.1| permease YjgP/YjgQ family protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 371

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 131/354 (37%), Gaps = 15/354 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N+++ + G  +P ++ 
Sbjct: 2   IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVISLLGLGVPEMVQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G  +  L+K  L LA+  ++   I+   + 
Sbjct: 62  LILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALALAVFTAVIATINVMWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +++ A+A+     + L E  F        +        +  Q +F+   R + 
Sbjct: 122 PWSSRHQEEVLAEAKANPGMATLVEGQFQSAQGGNAVLFVGNVKGSEFQHVFLAQLRPSG 181

Query: 183 T--HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G I  +    Q + L++G  +  + + +D  I  F +Y       + + 
Sbjct: 182 NARPSVVVADRGHIKQNEDGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQSVTL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   ++  L + + ++           R+EFH RLT  L  +I  L+ +  +    
Sbjct: 242 NNSDVQQMDMQTLWHSDAHDA----------RAEFHWRLTLILSVLIMALMVVPLSVVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              +   + P  +   I F +         K + +P     L   ++   ++ L
Sbjct: 292 RQGRVLSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWVWLTNLMYFGIAVML 345


>gi|215489604|ref|YP_002332035.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215267676|emb|CAS12134.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 360

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 115/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+    V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMQVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA +   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++  L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSIRGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLLMRK 359


>gi|229527563|ref|ZP_04416955.1| hypothetical protein VCG_000632 [Vibrio cholerae 12129(1)]
 gi|229335195|gb|EEO00680.1| hypothetical protein VCG_000632 [Vibrio cholerae 12129(1)]
          Length = 349

 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 114/347 (32%), Gaps = 19/347 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +     L  +     +   L++  F R  D   +       N  L  +F+       
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +        +      +   RQ I L +G  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYEGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LLN                ++E   R++     V   L++++     A
Sbjct: 242 AERDWEALPTLSLLN----------NADRRAQAELQWRISL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           +  ++ +   +  ++ I    F   S     I ++     I+ L+  
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALSATKSAI-EDGSLPVIIGLWPI 334


>gi|219871563|ref|YP_002475938.1| permease [Haemophilus parasuis SH0165]
 gi|219691767|gb|ACL32990.1| permease, inner membrane protein yjgP [Haemophilus parasuis SH0165]
          Length = 366

 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 123/354 (34%), Gaps = 15/354 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I +S +     ++ I +  Q+++ ++   S     +++L + G  +PT+  
Sbjct: 2   ILSRYLTKEIFKSQIAILFILLVIFFCQQLVRVLSSAVSGKVPTDLVLSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L      +E+ ++   G  +  L+K  LFL+I  +     +   + 
Sbjct: 62  LMLPLSLFIALLLTLGRFYAESEITVMRACGVGQSLLVKAALFLSIFTTAVAVYNVFWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   +   ++ A+A+    F+ L    F      +    +  +       +F  + +   
Sbjct: 122 PWAINKQSEMLAEAKANPRFAALAAGQFMSAGGYVLFIDNIKDNTINDIYVFQPEQQKKN 181

Query: 183 THKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
              +  A+SG +       Q + L +   +  +P + D  I  F +Y       +  +  
Sbjct: 182 KPSVVVAKSGELQGLPNGDQMLNLTNSTRYEGTPQTADFRISHFDNYNAYLGYQDVDSDE 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                 +   LL+                ++E   RL   L   +  L+++  +      
Sbjct: 242 KLVQRADFQKLLSE----------TSPEAQAELQWRLALILSVPLMALLAVPMSSVNPRQ 291

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            +  K+ P  +   I F +           + N     ++ +       +  L+
Sbjct: 292 GRFAKLLPALLLYLIYFLLQSSLKSAGASGKLNVSL--LMPMVSVAFLVLGTLL 343


>gi|56461047|ref|YP_156328.1| permease [Idiomarina loihiensis L2TR]
 gi|56180057|gb|AAV82779.1| Predicted permease [Idiomarina loihiensis L2TR]
          Length = 363

 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 115/359 (32%), Gaps = 20/359 (5%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           ++    +S L     ++ I    + ++ ++  S       I+ ++    +P +L ++ P 
Sbjct: 1   MISETLKSQLAVLFILMTIFVSQKFVRVLSDASEGDIPGAIIFQLLSLNLPALLSLILPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +        +  + E+ ++   G S   + +  L L+++L+I        + P    
Sbjct: 61  SLFLGILLAHGRIYADNEMTVLHACGVSEWYVTRVTLVLSLILAIITASFTLWLVPWSLD 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT---- 183
             ++L  KA+     + L    F +  +   +   +   +        V           
Sbjct: 121 QEQKLEDKARSESGLTALMPGRFQQASNQKAVIFVQRVGDEGDLEEVFVAQHTHNQGELQ 180

Query: 184 --HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
               +       I     +  L  G+  R +       +M F SY LQ +   +S  + K
Sbjct: 181 SGSVVMAKTGKVISETTGSQWLELGQGKRYAGDDDSYQMMSFDSYQLQIKEQQASEQLRK 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                   LL+                 +E   R+   L      L++++A     +  +
Sbjct: 241 LEAYPTVELLS----------RKEPAAIAELQWRIAIPL---AMPLLTLIAVPLSRVNPR 287

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMIKKKYT 359
           + K   +  +L I  G F         I        I L+   F +    L ++ K   
Sbjct: 288 QGKFGRMAPALLIYLGYFLLLMAAKSAIRDGVIPPIIGLWWIHFILLIFGLALVGKGRP 346


>gi|188532529|ref|YP_001906326.1| Inner membrane protein [Erwinia tasmaniensis Et1/99]
 gi|188027571|emb|CAO95418.1| Inner membrane protein [Erwinia tasmaniensis Et1/99]
          Length = 358

 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 116/355 (32%), Gaps = 2/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + + +   +V ++ +I+ + ++        ++      +   +P  + +
Sbjct: 5   LDRYIGKTIFNTIMATLFMLVSLSGIIKFVDQLRKTGQGEYTVLGAGLYTLLSVPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++ + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGALAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIGEFVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+  +  +    +  L+ +  D+        + +            D + 
Sbjct: 125 QGEQMARNFRAQQLVGGSLLSTQSGLWAKDGDNFVFIERIRDDSQLSGISIYSFDHDRRL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   + D++   L   +    +   +   S      +           + L  
Sbjct: 185 QTVRYAASAKYNADKKLWELAQVDQSDLTDAQQIKGSQTLSGEWKTTLTPDKLGVVALDP 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              ++S L +          ++   Y+     ++ Q L   +  L+++            
Sbjct: 245 GALSISGLYS-YSKYLQQSGQMAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVSM 303

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  +  L            ++IK++
Sbjct: 304 GMRVITGISFGFLFYVLDQIFGPLSLVYNIPPVLGALLPSAAFFVLSVAMLIKRR 358


>gi|94263394|ref|ZP_01287208.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
 gi|93456230|gb|EAT06364.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
          Length = 359

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/342 (13%), Positives = 106/342 (30%), Gaps = 6/342 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y++   GR+       ++ I  ++   +R++    +       ++     IP +
Sbjct: 1   MKLLDRYLITSFGRNLATVLGGLLAIYLLVDFFERVDNFLDAGLGTGGAVRYLLLKIPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +     L  +NR  EL+ +   G S   +I+P+L  A   ++    S   
Sbjct: 61  IEQLLPVALLLAGIITLGLLNRRHELMALQAAGLSTRRIIRPLLLAAFACTLLGMASSQW 120

Query: 121 IEPKCRST-IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P   S   +    + +         +   +    +          +      F   + 
Sbjct: 121 LLPPTMSELNRLWHQEVRQQENRGIERQGRIYYRGQEGIYSFRPAADSENRLADFSYLTW 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--T 237
           D          +     D +  +L +G++  K+    D  +  F+   L      +    
Sbjct: 181 DRDYRLAQLIFAARATWDGRKWLLEEGQLKEKANGDDDFVVDYFERRQLALPEEPADFFI 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +++ LS L +      +         R     +++     +   LI I      +
Sbjct: 241 PPYALSERALSTLFS--QATASADTPQRRQARLAIQHKISYIFLGLPLLLIGIPLLLAMS 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
             R  + +     + S    + WG       +       P +
Sbjct: 299 RGR-GRDLALAIPAASFLAFITWGLWSFGQSLAAAGQLPPFV 339


>gi|116327483|ref|YP_797203.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116331903|ref|YP_801621.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116120227|gb|ABJ78270.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116125592|gb|ABJ76863.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 386

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/364 (10%), Positives = 108/364 (29%), Gaps = 13/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + Y+     + F+ + + +  I  +  +   +   +++      +     Y +P +
Sbjct: 25  LKILDRYLFGEFFKVFIGTVVLLTGIMLLSLVNDNMRNFTTTKAPRYHVALFLVYSLPKI 84

Query: 61  LPM-VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +   V            +   + N EL+ +   G S   ++ P++   IL+ I +     
Sbjct: 85  ISTTVVSMSLMFSICFTVGQFSVNKELVSMMAAGVSFFRIVAPLILFGILMWIVMLFVTE 144

Query: 120 IIEPKCRSTIKQLSAKAQLAL---TFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           +I        K         +     S  + ++  +                     +I 
Sbjct: 145 LIVRPVNKLAKIEHDILTEGMGTLANSVYQFHVKGKEGFYYLYFYDPNKDEINGGFNYIR 204

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS- 235
              D     +  +     + + +   +   E        K  S   F+    +     + 
Sbjct: 205 LRNDGSPETVISSLKAKYNYETKLWKMKKVEEWHFDNDLKLSSQESFEEKEYELPEDPTY 264

Query: 236 -STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                    + NL  L          +        +E H      +  +I  LI  +A  
Sbjct: 265 FKIPAGSVEEMNLFQLKEEEKRR-IQKGLSYGDVLTEKHSVFALPMMTIIVTLIGTIA-- 321

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLL 352
                ++   +  + I++ +   +++ F+     + +N    P   +++       +   
Sbjct: 322 -GYFTKKTAGVASLGITIGVV-LIYYIFNSAGKSLGENGVIPPFVGVWITPSLFLGLCFW 379

Query: 353 MIKK 356
           M ++
Sbjct: 380 MFRR 383


>gi|260592209|ref|ZP_05857667.1| putative membrane protein [Prevotella veroralis F0319]
 gi|260535843|gb|EEX18460.1| putative membrane protein [Prevotella veroralis F0319]
          Length = 405

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 121/361 (33%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +   + YI++    +++ + L I+ IA V    + ++  +        I+       IP 
Sbjct: 45  LGILDWYIIKKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFIPY 104

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +   G S   L++P +   ++++   F   +
Sbjct: 105 YSNLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSIKRLMRPYMLSCVVIAGLTFYLNS 164

Query: 120 IIEPK---CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + P     R   + L   ++   +   ++  +       +     +Y        + I 
Sbjct: 165 FVIPHGTVIRQNFETLYRNSKKNTSAENVQLFVAKNTTAYIQNYDDQYKRGYGFSLVKIK 224

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + +          Q  +I   +    L++ ++     + + I     K   L  E  +  
Sbjct: 225 NKKIVSHLTAMEIQYDTIADSKYHWKLSNWKIRTLKGLKEHIQSGTTKDTVLLMEPTDLV 284

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +        LL+      +     +  Y  EFHKR+       I  +I +      
Sbjct: 285 YSKGQQETFTSPELLDYISKQTSRGSGNVVQYEVEFHKRIAMSFSSFILTIIGLAL---S 341

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +  R+      + I L++SF      +       Q+    P+L  ++  I    +     
Sbjct: 342 SRKRKGGMGLSLGIGLALSFSYIMLQTVSATFAIQDNT-PPVLAAWIPNIIFAIIAYFCY 400

Query: 357 K 357
           +
Sbjct: 401 R 401


>gi|237745417|ref|ZP_04575897.1| permease YjgP/YjgQ family protein [Oxalobacter formigenes HOxBLS]
 gi|229376768|gb|EEO26859.1| permease YjgP/YjgQ family protein [Oxalobacter formigenes HOxBLS]
          Length = 382

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/382 (11%), Positives = 110/382 (28%), Gaps = 26/382 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y    I +S +   +  + +     ++  ++ V      L+ +        P  
Sbjct: 1   MKILQRYFFSQIVKSVVFILVAFLGLFAFFDLISELSSVGRGGYQLHHVFVYILLGFPGY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + PF   + T   +     N+E  I+  +  S       +  + ++  +F F+   +
Sbjct: 61  IYELMPFAVLIGTIYAMALFASNSEFTIMRVSSLSTRDACWMLAKVGLVFLVFTFLVGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P       +                 ++ +       +  +   +  +    +     
Sbjct: 121 LTPYTSRMASEFRNNLIGRNLSDKFRTGMWSKDTIRENGREGEIIGSRFMNIKTMRPDGT 180

Query: 181 TQTHKIYYAQS----------GSIDLDRQAIILNDGEVHRKSPISKDISIMKFK------ 224
            +  K+Y               +           +G V      S      +F       
Sbjct: 181 IEQIKLYEFNRELELVKTVTAQNGHYLGNHEWQLNGVVESLIKSSGKSKGKRFPDSAPVV 240

Query: 225 --------SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
                              S I + AN  +   L      +     +   +Y+  F K++
Sbjct: 241 DTEKRDSIRLVSDVTPDILSVISVDANKMSAYEL-AVYNRHLVENKQDATSYQIAFWKKI 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYY 335
                  +   +++  A                I + ++F +    FS++       P+ 
Sbjct: 300 IYPFSVFVMMALALPFAYLHFRSGGVSLKIFTGIMIGVAFILINNLFSHVGLLNTWPPFL 359

Query: 336 IPILYLFLFCISSIFLLMIKKK 357
             ++   LF +S++F L   ++
Sbjct: 360 TAVIPSVLFLLSAVFALWWVER 381


>gi|304311789|ref|YP_003811387.1| Predicted permease YjgP/YjgQ family [gamma proteobacterium HdN1]
 gi|301797522|emb|CBL45742.1| Predicted permease YjgP/YjgQ family [gamma proteobacterium HdN1]
          Length = 369

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 120/365 (32%), Gaps = 22/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  + L     +V I    + ++ +   +    +  ++  +  Y +P  L 
Sbjct: 2   IIYRYLSRQLLVTTLAVTGVLVLILMGGRFIKYLGGAADGVLTGALIFWVMLYKLPGFLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSR----ITLIKPVLFLAILLSIFLFISE 118
           ++ P    +        M    E+++++  G SR       + P L  A+++        
Sbjct: 62  LILPLGLFLGILLSYGRMYLENEMVVLEACGMSRGALVKHTLMPALCTALIVGFIANYVS 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
            +   K ++ + +   K+ L L            +       I   +       I   + 
Sbjct: 122 PLCNTKAQTMLDEQKRKSALELLSPGQFHATRNAMTVTYIEDIDGKHKEMQNLFIVNYNQ 181

Query: 179 RDTQTHKIYYAQSGSIDLDR----QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
            + +  +I  A+ G   +      + +++ +G     S      +   F  Y L+ +   
Sbjct: 182 ANPEKIEITRAKRGDYQIHEDTGARYLVMKEGYRFEGSAGMAKFNRTAFDVYQLKLDPPR 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              I  +    + + L+                 R+E   R+   +   I   I+ +A  
Sbjct: 242 PLEIEGQYTLMSDAQLVLE----------GSLAARAELQWRMALPVLVPI---IAYLAVI 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              +  ++ +   +  S+ +          + +KI +     P L L+   I+   L + 
Sbjct: 289 LSKVNPRQGRYMKLLPSIVLYLVYLSLLLAVKNKIAK-GKMDPELSLWAVHIAFFLLAVF 347

Query: 355 KKKYT 359
             K++
Sbjct: 348 MHKWS 352


>gi|33151746|ref|NP_873099.1| hypothetical protein HD0552 [Haemophilus ducreyi 35000HP]
 gi|33147967|gb|AAP95488.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 360

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 123/358 (34%), Gaps = 5/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI + I        L    + ++I++++    V             +  ++P+ 
Sbjct: 6   MNILERYIGKTIIMMMFAVLLMSSGLVFIIKLVEEFKNVGEGNYDALTATYYALLMLPSD 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L+++  ++EL+++ +TG SR  +   V+  AI + I    +   
Sbjct: 66  IKEFVPVVLLIGGLLGLSNLASHSELVVMQSTGFSRFRIGLAVMKTAIPIIILTMSASEW 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I PK      +       +          F+  D + ++ I      + L  I I    +
Sbjct: 126 IIPKV-EQFARNMRSVAQSGGSMLSTNGGFWAKDGNNFLYIRHIENEHQLNNISIYHFEN 184

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +  A S     + +   L + +    +      +    +++      +    + L
Sbjct: 185 KVLTSVSQADSALF--NGKDWTLQNLQTATITDHGIQTTHQANQNWQTTITPSKLGIVSL 242

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    +++ L +   +      +  + ++  F +++ Q +   +  L++I          
Sbjct: 243 KPESLSIAGLAD-YVSFLTETGQDSKRFQIAFWRKVYQPISMAVMMLLAISFIFGPLRSS 301

Query: 301 QRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I I     F V    F  +       P  I  L   L C++ ++ L+ KK+
Sbjct: 302 AMGTKLFIGIIAGFIFYVSNIVFGNMTLVFSWLPIAIGALIPSLICLAIVWWLLTKKR 359


>gi|315223961|ref|ZP_07865805.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea F0287]
 gi|314946065|gb|EFS98070.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea F0287]
          Length = 358

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 119/360 (33%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F M  +  + I  ++ + ++++ +      +N +L      I   
Sbjct: 1   MKILDWYILKRYLLTFFMMIILFIPIGIIVDLSEKVDKMIQKGAPMNEILWYYLSFIVYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++ I ++G S +  ++P +  A ++S+ +F     
Sbjct: 61  ANILFPILLFLSIIWFTSKLANNTEIIAIQSSGVSYMRFLRPYIVGASIISVIVFFMGMF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P   +       K   +     + +      D+D     S    +       +     
Sbjct: 121 IVPAASTVYNDFWNKYIRSSKVESVSDLYNQFSDNDYLYVSSFNYQDKRGYNFSVEHFDG 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +   A++       +   L +    +       I            +  +   +  
Sbjct: 181 IKMTEKINAETIQWIDSTKTYRLTNYSKRKIGEGDDVIVKRDQLDTIFNFKPDDLMPMEY 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            A ++NL  L              L  Y    ++R        I  LI +      ++ +
Sbjct: 241 TAENKNLFELNKFIEREKMKGSPNLNMYLLVKYRRWGAISTAFILTLIGVAV---SSVKK 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           +      + + + + F   +         + +    P++ + L  +  + L ++  +  +
Sbjct: 298 RGGMGINLMVGVVVGFSFVFFDRVFGTLAQSSGGLSPLMAVLLPNLIFLTLAILLLRKVR 357


>gi|331654590|ref|ZP_08355590.1| putative permease [Escherichia coli M718]
 gi|331047972|gb|EGI20049.1| putative permease [Escherichia coli M718]
          Length = 386

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 124/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I + G S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  +L+     +     + +  +   ++     S +   + +
Sbjct: 208 DLSLESYIYARSATIEDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMDLEELSM 267

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 268 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 326

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 327 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYWYDR 384


>gi|215488305|ref|YP_002330736.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
 gi|215266377|emb|CAS10814.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
          Length = 359

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 122/354 (34%), Gaps = 3/354 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N       + I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVDVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     +      + ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETQETSDYLAWQSTFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +      + + + +    +  +  +++         P+  L L     +  L +
Sbjct: 300 RMG--SRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351


>gi|261867783|ref|YP_003255705.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413115|gb|ACX82486.1| 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 372

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/371 (15%), Positives = 136/371 (36%), Gaps = 27/371 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I +S +     ++ I +  Q+++ +   ++     +++  + G  +PT+  
Sbjct: 6   ILTRYLTKEIFKSQIAILFILLLIFFCQQLVRVLGSAANGKVPADLVFSLLGLGMPTMAQ 65

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +     L  +   +E+ ++   G  +  L+K VL L++L S     +   + 
Sbjct: 66  LMLPLCLFIAILLTLGRLYAESEITVMRACGVGQPILVKVVLLLSLLTSGVAAYNALWLT 125

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+       L    F   ++  ++       NN +  +++  ++   
Sbjct: 126 PWAIHKQTEIVEDAKANPNVGALSAGQFVSANNSDFVLFIDDIQNNQINNVYVFQTQPRG 185

Query: 183 --THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G    +    Q + L + E    +    D  I  F  Y         + 
Sbjct: 186 QSKPSVIVAEKGELKALPNGDQVLNLQNSERFEGTAALPDFRITHFDEYQAYLGHKAVND 245

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +  + +LS LLN                ++EFH RLT  L   I  L+++       
Sbjct: 246 DSAETEELSLSQLLNT----------KTPAAKTEFHWRLTLILAVPIMALLAVPL---SR 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN----PYYIPILYLFLFCISSIF--- 350
           +  ++ +   +  +L +    F   S +             ++P++ +  F ++ +    
Sbjct: 293 VNPRQGRFAKVLPALLLYLIYFLLQSSLKSAGGAGKLDAGLFMPLVNIVFFLLAILLNSW 352

Query: 351 --LLMIKKKYT 359
               M + +Y+
Sbjct: 353 DSAFMYRIRYS 363


>gi|148977744|ref|ZP_01814300.1| putative permease [Vibrionales bacterium SWAT-3]
 gi|145962958|gb|EDK28228.1| putative permease [Vibrionales bacterium SWAT-3]
          Length = 360

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 115/355 (32%), Gaps = 23/355 (6%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           ++R   +S       +  +    + +  +   S      +++L I    +P +  ++ P 
Sbjct: 1   MIRETIKSQFAIFFVLFLVFLSQKFISVLADASDGAIPASLILSIVSLNMPAMGLLMLPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +        +   +E+++++ TG     LI+  L+LA++ +     +   + P  + 
Sbjct: 61  SIYIGILLTFGRLYAESEIVVMNATGIGNKFLIQSALYLALITASVAAFNSFWLSPWSQD 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT---- 183
            ++Q+  +     +   L +  F    D   +        N L+ +F+   R   +    
Sbjct: 121 KVEQMYEEVAAENSVDLLPKGKFEGTPDGSSVVFIDDIDGNKLENVFVAQMRPRDSVLPS 180

Query: 184 -HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                      +   RQ I++ DG  H   P   D  +  F+ Y                
Sbjct: 181 VMYSKSGDVKELSDGRQVIVMYDGTRHEGVPTRLDYMVTHFEEYEGLIGQREVEKKGRDW 240

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
                  L+               + ++E   R++     +   L++++     A+  ++
Sbjct: 241 EAIPTLDLV----------GNPNNSAKAELQWRISL---VLCIPLLTMLVVPLSAVNPRQ 287

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-----YIPILYLFLFCISSIFLL 352
            +   I  ++ I    F   S     IE+          PI  L L        +
Sbjct: 288 GRFAKIGPAILIYLTYFLAISATKSAIEEGSIPAVVGMWPINALLLIVAIGANFM 342


>gi|117925962|ref|YP_866579.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
 gi|117609718|gb|ABK45173.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
          Length = 392

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 133/354 (37%), Gaps = 7/354 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L     +   + + +  +  + QIL  ++L  + + S+++L K+   ++P  
Sbjct: 1   MKRLSRYLLTECALTSFTALVVLTTLVLLPQILMLVDLWVNKSVSVSVLGKMVLLIMPKF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     L  + +++EL++I  +G S + +  P+    ++++         
Sbjct: 61  LVASLPMALLVGILIGLGRLAQDSELIVIKASGISLLRIFYPLSVPIVVVTACSLYLNWF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  + +        TFS   +     +         + +    L+G+ I D RD
Sbjct: 121 LVPDSHTLFQNIRVALLSQNTFSIKTQTFNNTIPGLTIYVNRQSHGGKLLEGLLIHDERD 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                   A+SG +        A++L +G  H+ +P +     + F +Y L+   A  + 
Sbjct: 181 PDMPVTVIAKSGMLHRGSTGETALLLKEGSRHQMAPGNA-YRRLNFSTYDLELGIAFETE 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       + +         P L      E+H+R    L  ++ G ++I  A    
Sbjct: 240 SSSGDRAIRSYSIADLEQARIAQDPLLASEAEREWHRRFAIPLATLLLGFLAIPLAM--Q 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             ++  +     +++S+   + +    +   + +     P +  +   ++ +  
Sbjct: 298 QNQRSGRGFGFIVAISVLI-LQFILLTLGEAMAKRGLISPAMGAWSPNLALLLF 350


>gi|331643680|ref|ZP_08344811.1| putative permease [Escherichia coli H736]
 gi|331037151|gb|EGI09375.1| putative permease [Escherichia coli H736]
          Length = 386

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 124/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I + G S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFVALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +  +   ++     S +   + +
Sbjct: 208 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMDLEELSM 267

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 268 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 326

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 327 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYWYDR 384


>gi|26249547|ref|NP_755587.1| hypothetical protein c3716 [Escherichia coli CFT073]
 gi|254162933|ref|YP_003046041.1| hypothetical protein ECB_02855 [Escherichia coli B str. REL606]
 gi|26109955|gb|AAN82160.1|AE016766_248 Hypothetical protein c3716 [Escherichia coli CFT073]
 gi|253974834|gb|ACT40505.1| conserved hypothetical protein [Escherichia coli B str. REL606]
 gi|253978989|gb|ACT44659.1| conserved hypothetical protein [Escherichia coli BL21(DE3)]
 gi|309703415|emb|CBJ02754.1| putative permease [Escherichia coli ETEC H10407]
          Length = 386

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 124/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I + G S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +  +   ++     S +   + +
Sbjct: 208 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMDLEELSM 267

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 268 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 326

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 327 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYWYDR 384


>gi|269468373|gb|EEZ80038.1| permease [uncultured SUP05 cluster bacterium]
          Length = 360

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 133/364 (36%), Gaps = 8/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI + + +  L   + +V I    + L+ +  +  ++ +L   L   G LIP++
Sbjct: 1   MKILDRYIAKTLLKYSLSVMVVLVGIFAFFKFLEEVGDIGRASYTLFDALAYVGLLIPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  ++     +     L  +  N+EL+I+   G S + + K  L ++++  + + I    
Sbjct: 61  VYALSSLIILLGCILGLGYLAGNSELIIMRGAGISVVEITKTTLKVSLVFIVIMIIFGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      K+  A+A      S  ++  + R  ++        +     +   I  +  
Sbjct: 121 ISPLFSDYAKKYRAQALGESVISSSQQGFWLRDGNNFIQVDKNIDGRIFEKITLINLNTP 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK----DISIMKFKSYTLQTESANSS 236
           +    + Y+       D + ++L     H+ +   +    D   ++     +  +     
Sbjct: 181 STLDSVVYSDKAVF--DGKNMVLQKSNYHQINSDQEFAAIDQKTLQQYLTEVAFDQELIK 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           ++  +  + +   L        +      + Y  E ++R+ + L  +   ++++      
Sbjct: 239 SLKKEPKEFSTWQLFRR-VQFLSNNDLSADIYEVELYQRIMKPLTLIAMIILALPFVFGS 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  +     + +S+ F +      +I       + +    L    +  + + M+++
Sbjct: 298 LRDSSLGRKIFTGVVISLFFELSSRLGGMISLRFDLNHLLSA-SLPTIVVFVLAIFMLRR 356

Query: 357 KYTK 360
             T+
Sbjct: 357 VSTR 360


>gi|198283962|ref|YP_002220283.1| permease YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667335|ref|YP_002426598.1| YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248483|gb|ACH84076.1| permease YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519548|gb|ACK80134.1| YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 357

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 117/361 (32%), Gaps = 6/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  + R +     +    ++ + ++ QI+ + +       S+  LL  +   +P V
Sbjct: 1   MKRADRLLFRGMLLYSSLVLAMLLTLVYIAQIIAKSSGPGHGVWSMTRLLSYAALQLPDV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    +     ++ ++ ++E++ +  +G S   L +P+L + +L +  +F     
Sbjct: 61  AYDVIPLALLLGALVWMSILSGHSEVIALRMSGWSVWRLEQPLLLVGLLGAGLMFALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENL--FFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           + P      + + A A       +       + R    +    +  +    LQ + I D 
Sbjct: 121 VIPVTAPAAEAMWANAGEPGAGFHNMGPRGLWLRYGTQIIQVGTVGDGGKILQNLHIADV 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           R           +           L+D  + R +P    ++ +    + +    A  S+ 
Sbjct: 181 RQGMVGINAMTTAAEAVFQGGHWYLHDVRLFRITPDQIQMTAVTETPWPVALHPATLSSF 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                   L  L   +          +  +   F +R++     ++  L+++        
Sbjct: 241 AHPTRTMTLPTL-WQSYQALQSGALNMNRFALAFWRRVSYPWVGLVMILLAVPFV--TRN 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R       +   L +  G  +        I  +    P+    L       +     ++
Sbjct: 298 PRGGGLAARVMAGLVLGLGFHFLTEMSG-YISVSGGIPPLAATLLPIALFAAVAGALHRF 356

Query: 359 T 359
           +
Sbjct: 357 S 357


>gi|126696921|ref|YP_001091807.1| putative permease [Prochlorococcus marinus str. MIT 9301]
 gi|126543964|gb|ABO18206.1| possible permease [Prochlorococcus marinus str. MIT 9301]
          Length = 401

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 131/376 (34%), Gaps = 25/376 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  I    + +      I+  +  +   I  +      L + LK+  + +P+ L
Sbjct: 25  LIDRWLLGQIIPPMIFAISAFTVISLSVGVMFDLIRKIVEFGLPLFLALKVLFFSLPSFL 84

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      ++ N+ELL + + G     +I P + L+I ++   F   + +
Sbjct: 85  VLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIISPAIALSIFMTGLTFYFNDNL 144

Query: 122 EPKCRS-----------------TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY 164
            P                       K     ++     S   +          +I  + +
Sbjct: 145 VPASNKLAEKTLRAGIGSSFSAEQRKDNIMFSRYGSRISSSNKKPTKTNTFLTHIFYASW 204

Query: 165 NPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK 224
             NN ++G+ ++D       +I  A++G  D    + I +DG +    P  +  +I   +
Sbjct: 205 YENNIMEGVTVLDFSREDFQQILKAKNGVFDKKSSSWIFSDGNIVSIDPSGQTTNIQFQE 264

Query: 225 -SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLFP 282
            +Y         + +   AN+  L   +            + +   +    ++ T     
Sbjct: 265 YTYPFVEGPMELAKVPKDANEMTLKQAIQAEKIYEKTGNLKEIRRIKVRIQEKFTLPFAC 324

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           ++FGLI            +  K     +S+ +   +++  S++           PI   +
Sbjct: 325 LVFGLIGSSLG--SKSNLRSSKSQGFGLSVIL-ILIYYVMSFLFSSFGVKGILPPIFAAW 381

Query: 343 LFCISSI--FLLMIKK 356
           L  + S+   + ++++
Sbjct: 382 LPVLISLGGGIYLLRR 397


>gi|331648770|ref|ZP_08349858.1| putative permease [Escherichia coli M605]
 gi|331042517|gb|EGI14659.1| putative permease [Escherichia coli M605]
          Length = 386

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 123/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 GASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S N   + +
Sbjct: 208 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNLEELSM 267

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 268 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 326

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 327 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 384


>gi|281357796|ref|ZP_06244282.1| permease YjgP/YjgQ family protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281315743|gb|EFA99770.1| permease YjgP/YjgQ family protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 371

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/370 (12%), Positives = 110/370 (29%), Gaps = 17/370 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+ R    +F M+   + F      +++ ++ V S   S     + + Y++P +
Sbjct: 1   MKILNWYVTRGFLLAFFMAIGILTFGMTGANLVKVLDYV-SQGISFFTFFEFTLYILPII 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P+   +    V   ++ ++E+  +   G S + ++ P+L +   L +F    +  
Sbjct: 60  LTFTVPWAVMVAVMLVFGRLSADSEITAMRACGVSILQIVSPILIITFFLMLFCLYLQVE 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + L   A +    +  E       ++ +     K   +          S  
Sbjct: 120 VGPPLLGKSRTLMQTAAINQPLAIFEPGKQIEFENTIIYIDDKEGEDGIKGVQIYTLSDP 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILN--------------DGEVHRKSPISKDISIMKFKSY 226
               +   A+ G + +D++  +L                 +              +   +
Sbjct: 180 QTVAQDISAERGKLLVDKEKQLLIVRLFDCLVVDKKGAAEQQQDGDAGMPTRFFTQQLEF 239

Query: 227 TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
           +       +   +           L                   E ++R+   L P+ F 
Sbjct: 240 SFNYGKQANERRISTKAKYMKLTDLMGKIRLTKQLERDTTELEVELNQRIAFALSPIAFL 299

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
           L+ +  A      R+   +      +                   + Y   +L+L     
Sbjct: 300 LLGLPLAI--RTSRRETSVGLFLSVILAGVFFLSIILCESLSSFPHLYPQYLLWLPNIIF 357

Query: 347 SSIFLLMIKK 356
             +  +M  +
Sbjct: 358 QILGAVMTYR 367


>gi|254486546|ref|ZP_05099751.1| permease, YjgP/YjgQ family [Roseobacter sp. GAI101]
 gi|214043415|gb|EEB84053.1| permease, YjgP/YjgQ family [Roseobacter sp. GAI101]
          Length = 365

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/362 (12%), Positives = 117/362 (32%), Gaps = 22/362 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              LY  R     F++    +  +  ++ ++++    +        L  ++    P  L 
Sbjct: 2   ILHLYFARRFVTGFVLISAVLFALLILVDMVEQARKFAEHDIGWQRLFGMTLLNTPETLN 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    + T  +  S+ R++EL++   +G S ++ ++  +++A ++ I      N I 
Sbjct: 62  LILPLIMILATVVLFLSLARSSELVVTRASGRSALSALQAPVWVAFIIGIMAVGMLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-------LYIKISKYNPNNTLQGIFI 175
                   QLS   +     +    +    L          +    S  + +      F+
Sbjct: 122 AATAKRYIQLSESIRAGGVSTLSISDEGLWLRQGGDQGQTVIRAWRSNADASVLYDVTFL 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQ------AIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
             +      +   A S +++ D        +  L  G     +    +   +       +
Sbjct: 182 TYAAQGGPIRRIEASSAALEDDGWVLTGAKSWPLELGVNAEGNAEVFETLTLPSTLTLDR 241

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
              + +   V+   D           +           ++      L +  F V   L++
Sbjct: 242 IRESITDPGVVSIYDLP------GFIHQLELAGFSPRRHKVWLQTELARPFFLVAMVLVA 295

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                     R       +  S+ + FG+++  S+    + +N     +L  +   ++SI
Sbjct: 296 SAF--TMRHTRFGGTGVAVLASVLLGFGLYFIRSFAQ-ILGENGQIPVVLAAWAPPVASI 352

Query: 350 FL 351
            L
Sbjct: 353 LL 354


>gi|88808511|ref|ZP_01124021.1| possible permease [Synechococcus sp. WH 7805]
 gi|88787499|gb|EAR18656.1| possible permease [Synechococcus sp. WH 7805]
          Length = 388

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/375 (13%), Positives = 132/375 (35%), Gaps = 21/375 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  +    L +      ++  +  + + +  +  S   + I +++    +P+ L
Sbjct: 18  LLDRWLLGELLGPLLFAVAAFTVVSLSVGVMFELVRQIVESGLPVGIAVQVLLQRLPSFL 77

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M +    + ++ N+EL  + + G +   +I P L LA+++S   FI  + +
Sbjct: 78  VISFPMATLMASLLAYSRLSANSELTALRSVGVTATRMIVPALILALVMSGLTFIFNDAL 137

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY------------IKISKYNPNNT 169
            P+   + +   A+A      +    N+ +     L             +  ++   +  
Sbjct: 138 VPRANRSAETTLARALGKAIATEKGTNIVYSRFGRLQETDGTSNKGLAQLFYARKFRDGV 197

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           +  + ++D       ++  A     +  +      DG++   +P     S   F  Y   
Sbjct: 198 MNEVTVLDFTRAGFTQMLVADRAVWNESQAKWQFFDGQILTLTPSGSTTS-ADFDQYLYP 256

Query: 230 TESANSSTIVLKANDQNLS---FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
             +A      L  +  N++    L   +        +          ++ T  +  ++FG
Sbjct: 257 LSAAPIRIAKLPKDANNMTVVEALQAKDLLQQAGDIKEARRLEVRIQEKFTLPMACLVFG 316

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFC 345
           LI      K     +  +     IS+ +   V++  S+    +       P+L  +    
Sbjct: 317 LIGASLGAKP--NNRTSRSQGFGISVVL-ILVYYVLSFSFSSLGVKGTLPPLLAAWSPVL 373

Query: 346 ISSIFLLMIKKKYTK 360
           IS      + ++ ++
Sbjct: 374 ISLAGGGFLLRQASR 388


>gi|262068070|ref|ZP_06027682.1| permease, YjgP/YjgQ family [Fusobacterium periodonticum ATCC 33693]
 gi|291378156|gb|EFE85674.1| permease, YjgP/YjgQ family [Fusobacterium periodonticum ATCC 33693]
          Length = 359

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 117/355 (32%), Gaps = 1/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  +IF+   +  
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRAILKPILAIAIGAAIFILFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    +K +  K         L+E  F    D   I + K   +   + I   +  +
Sbjct: 121 IIPRSFVKLKYVGTKIAYENPVFQLKEKTFIDNLDQYSIYVDKVESDGKAKNIIAFEKPE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +T                AIIL   +        K      F    +         + L
Sbjct: 181 DKTKFPMVLTGEEAFWKDNAIILKQSQFISFDETGKKNLTGTFDEKRVVLTPY-FENLNL 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K  D     + +   N      E +  Y+ E  ++L      V   +I    +     + 
Sbjct: 240 KIKDVEALSITDLVKNIRKVETEEVLKYKIEIFRKLALIFSTVPLAVIGFCLSLGHHRIS 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           ++       I +            +    + +P+        L       L   K
Sbjct: 300 KKYSFVLAMIIIFAYIIFLNIGIVMASAGKIHPFIATWTPNVLLYFLGYKLYRAK 354


>gi|331679053|ref|ZP_08379725.1| putative permease [Escherichia coli H591]
 gi|331073118|gb|EGI44441.1| putative permease [Escherichia coli H591]
          Length = 386

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 126/360 (35%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + + I+   ++     S N   + +
Sbjct: 208 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNLEELSM 267

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   N      +    YR    ++L   +  +   L+++          
Sbjct: 268 PGNSFSVRQL-NHYINYLQETGQPSSEYRLALWEKLGHPILTLAMILLAVPFTFSAPRSP 326

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L++   + +
Sbjct: 327 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALILVYLFDR 384


>gi|294341187|emb|CAZ89588.1| putative permease YjgP/YjgQ [Thiomonas sp. 3As]
          Length = 365

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 113/359 (31%), Gaps = 8/359 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   ++L  +  +  +  L  + + + I +L  ++ +     SL+  L      +P+ 
Sbjct: 1   MRTVRRFLLLHVLSAVGLVTLAFLALLFFIDMLNDLSNLGKPGFSLSGTLLHVALSMPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    +     L S+  ++E  I+  +G S    +  +L LA  L + LF+    
Sbjct: 61  AYEVLPIATLVGGVFALASLAASSEFTILRISGLSPRAALGLLLQLAAALVVTLFLLGEW 120

Query: 121 IEP---KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
           + P   +  + ++            S +          +  + I   N    L  I I  
Sbjct: 121 LAPAAGQLSARLQAGGGSGIGTQLASGVWLRNDSDRSGNQTVNIKAINTRGDLTDIHIYV 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK---DISIMKFKSYTLQTESAN 234
                                   +L++         +     ++ +    +      + 
Sbjct: 181 LNAQAQIAAELHAPSGQYEGGGTWMLHNVTRTELPQQTGAALKVTQLPSYRWRTSLSPSV 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              ++L  +  +   L      +     +  E Y  +  K+L      V+  L+++  A 
Sbjct: 241 LGVLLLSPDKMSAIDL-WRYIQHLRANHQAAERYEIQLWKKLFYPFSAVVMLLLALPFAY 299

Query: 295 KRALVRQRKKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                +         I L I+F +    FS +       P     + + LF    + + 
Sbjct: 300 LHTRSKGVSGKVLAGIVLGIAFILLNTLFSSLGILGTWPPAITAAMPMLLFGGLGLIVF 358


>gi|293390144|ref|ZP_06634478.1| 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290950678|gb|EFE00797.1| 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 372

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 57/371 (15%), Positives = 137/371 (36%), Gaps = 27/371 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I +S +     ++ I +  Q+++ +   ++     +++  + G  +PT+  
Sbjct: 6   ILTRYLTKEIFKSQIAILFILLLIFFCQQLVRVLGSAANGKVPADLVFSLLGLGMPTMAQ 65

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +     L  +   +E+ ++   G  +  L+K VL L++L S     +   + 
Sbjct: 66  LMLPLCLFIAILLTLGRLYAESEITVMRACGVGQPILVKVVLLLSLLTSGVAAYNALWLT 125

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+       L    F   ++  ++       NN +  +++  ++   
Sbjct: 126 PWAIHKQTEIVEDAKANPNVGALSAGQFVSANNSDFVLFIDDIQNNQINNVYVFQTQPRG 185

Query: 183 --THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G    +    Q + L + E    +    D  I  F  Y         + 
Sbjct: 186 QSKPSVIVAEKGELKALPNGDQVLNLQNSERFEGTAALPDFRITHFDEYQAYLGHKAVND 245

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A + +LS LLN                ++EFH RLT  L   I  L+++       
Sbjct: 246 DSAEAEELSLSQLLNT----------KTPAAKTEFHWRLTLILAVPIMALLAVPL---SR 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN----PYYIPILYLFLFCISSIF--- 350
           +  ++ +   +  +L +    F   S +             ++P++ +  F ++ +    
Sbjct: 293 VNPRQGRFAKVLPALLLYLIYFLLQSSLKSAGGAGKLDAGLFMPLVNIVFFLLAILLNSW 352

Query: 351 --LLMIKKKYT 359
               M + +Y+
Sbjct: 353 DSAFMYRIRYS 363


>gi|330950945|gb|EGH51205.1| permease YjgP/YjgQ [Pseudomonas syringae Cit 7]
          Length = 353

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 110/355 (30%), Gaps = 4/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +  +   +  +  + S T +L   L       P  
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDI-SDTYTLADALSYVMLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++  ++EL I+   G S   ++  V+   +LL I   +    
Sbjct: 60  VYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMIAGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ +         L+ R  D+     +       L          
Sbjct: 120 VAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINTVQPNGLMLGVTRYRFDDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+  +   D     L D      +  S  +     + + +       ST+++
Sbjct: 180 RHMLTSSFAKEANFKTD--YWELKDVTTTHFNDGSTKVINTPVERWDVALSPQLLSTLIM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                ++S L     +    +      Y   F  ++ Q    V   L++I          
Sbjct: 238 PPESLSISGL-WSYAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +     + +  +F +          +   P  + +L     C  +  LL+ +
Sbjct: 297 TLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLLPAAACALAGVLLLRR 351


>gi|227114629|ref|ZP_03828285.1| putative permease [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 371

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 132/354 (37%), Gaps = 15/354 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N+++ + G  +P ++ 
Sbjct: 2   IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVISLLGLGVPEMVQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G  +  L+K  L LA+  +I   I+   + 
Sbjct: 62  LILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALVLAVFTAIVATINVMWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +++ A+A+     + L E  F        +        +  + +F+   R + 
Sbjct: 122 PWSSRHQEEVLAEAKANPGMAALVEGQFQSAQGGNAVLFVGNVKGSEFEHVFLAQLRPSG 181

Query: 183 T--HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G I  +    Q + L++G  +  + + +D  I  F +Y       + + 
Sbjct: 182 NARPSVVVADRGHIKQNEDGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQSVTL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   +++ L + + ++           R+EFH RLT  +  +I  L+ +  +    
Sbjct: 242 NNSDVQQMDMNTLWHSDAHDA----------RAEFHWRLTLIISVLIMALMVVPLSVVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              +   + P  +   I F +         K + +P     L   ++   ++ L
Sbjct: 292 RQGRVLSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWVWLTNLMYFGIAVML 345


>gi|307310386|ref|ZP_07590034.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|306909281|gb|EFN39776.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|315062298|gb|ADT76625.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|323377117|gb|ADX49385.1| permease YjgP/YjgQ family protein [Escherichia coli KO11]
          Length = 359

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 125/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VSS        + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSSGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S +   + +
Sbjct: 181 DLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLDELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 357


>gi|83942393|ref|ZP_00954854.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. EE-36]
 gi|83846486|gb|EAP84362.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. EE-36]
          Length = 365

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 111/357 (31%), Gaps = 16/357 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              LY  R     F++    +  +  ++ ++ +    SS       L  ++    P  + 
Sbjct: 2   ILHLYFARRFIMGFILISAVLFSLLVLVDMVDQARRFSSYDIGWLRLFGMTLLNTPETMN 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    + T  +  S+ R++EL++    G S ++ ++  +++A ++ +      N I 
Sbjct: 62  LILPLIMILATVVLFLSLARSSELVVTRAAGRSALSALQAPIWVAFIIGVMAVGMLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-------LYIKISKYNPNNTLQGIFI 175
                   QLS   +   T      +    L          +    S  + +      F+
Sbjct: 122 AATAKRYIQLSDSIRAGGTSVLSVSDEGLWLRQGSDEGQTVIRAWRSNKDASVLYDVTFL 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI---SKDISIMKFKSYTLQTES 232
             + +    +   A S ++  +     L D +                    +       
Sbjct: 182 SYAPEGGPARRIEADSAAL--ENGIWTLTDAKSWPLEVGVNAEGAAETFDTLTLPSTLTL 239

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                 +      ++  L +               ++      L +  F V   L++   
Sbjct: 240 DRIRDSITDPGAVSIYDLPD-YIKQLELAGFSPRRHKVWLQTELARPFFLVAMVLVASAF 298

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                  R       +  S+ + FG+++  S+    + +N     +L  +   ++SI
Sbjct: 299 --TMRHTRFGGTGVAVLASVLMGFGLYFIRSFAQ-ILGENGQIPVLLAAWAPPVASI 352


>gi|256820810|ref|YP_003142089.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea DSM
           7271]
 gi|256582393|gb|ACU93528.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea DSM
           7271]
          Length = 358

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 119/360 (33%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F M  +  + I  ++ + ++++ +      +N +L      I   
Sbjct: 1   MKILDWYILKRYLLTFFMMIILFIPIGIIVDLSEKVDKMIQKGAPMNEILWYYLSFIVYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++ I ++G S +  ++P +  A ++S+ +F     
Sbjct: 61  ANILFPILLFLSIIWFTSKLANNTEIIAIQSSGVSYMRFLRPYIVGASIISVIVFFMGMF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P   +       K   +     + +      D+D     S    +       +     
Sbjct: 121 IVPAASTVYNDFWNKYIRSSKVESVSDLYNQFSDNDYLYVSSFNYQDKRGYNFSVEHFNG 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +   A++       +   L +    +       I            +  +   +  
Sbjct: 181 IKMTEKINAETIQWIDSTKTYRLTNYSKRKIGEGDDVIVKRDQLDTIFNFKPDDLMPMEY 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            A ++NL  L              L  Y    ++R        I  LI +      ++ +
Sbjct: 241 TAENKNLFELNKFIEREKMKGSPNLNMYLLVKYRRWGAISTAFILTLIGVAV---SSVKK 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           +      + + + + F   +         + +    P++ + L  +  + L ++  +  +
Sbjct: 298 RGGMGINLMVGVVVGFSFVFFDRVFGTLAQTSGGLSPLMAVLLPNLIFLTLAILLLRKVR 357


>gi|182413236|ref|YP_001818302.1| permease YjgP/YjgQ family protein [Opitutus terrae PB90-1]
 gi|177840450|gb|ACB74702.1| permease YjgP/YjgQ family protein [Opitutus terrae PB90-1]
          Length = 384

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 59/384 (15%), Positives = 126/384 (32%), Gaps = 32/384 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQ-RINLVSSSTESLNILLKISGYLIPT 59
           M   + Y+ + +  +   +     FI  V  +L+  +  V +   SL +  ++   L+P 
Sbjct: 1   MNLLDRYLFKSVLFTCAAAVALFTFIVLVPNVLRDMLAYVLTGQLSLLVFARLVFTLLPL 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L    P          L  ++ ++E+  +   G S   +++P+L LA + S        
Sbjct: 61  ALSYALPMGMLTGVLLTLGRLSADSEVTAMRAVGLSIPRIVRPILLLAAMGSALGIYLNF 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
              P+ R   ++  A A  A   + +    F R      + + +                
Sbjct: 121 ESMPRARVEYERGFAAAIQANPLNLIVPKTFIRSFPGYVVYVGEKQGGIMRDFWLWELDA 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT------------ 227
           + +  +   A SG  D D     L       K       +  +F+               
Sbjct: 181 EGRVERFVRAASGRFDYDEPNNSLMLTLTQAKVESRAKENPERFEKPQLVASLGQWGPIQ 240

Query: 228 --LQTESANSSTIVLKANDQNLSFL-----------LNPNPNNPNYRPELLETYRSEFHK 274
             L      ++ I +K        L           L  +                 FH 
Sbjct: 241 LSLNRFFGRNAGIRMKQEWMTYGQLQAEGERLAAQPLPADAAEAKQARRTRMKLAIVFHD 300

Query: 275 RLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           ++   L      LI +    K +   +R+      +++ I+  V++  + +I  ++++P 
Sbjct: 301 KINTALAVFSLALIGVPLGIKVS---RRETSANFAVAVGIT-LVYYLMTVVIKVLDRHPE 356

Query: 335 YIP--ILYLFLFCISSIFLLMIKK 356
           Y P  +L+L  F +    L ++ +
Sbjct: 357 YRPDLLLWLPNFILIGFGLWLMAR 380


>gi|262045293|ref|ZP_06018318.1| YjgP/YjgQ family membrane protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037349|gb|EEW38595.1| YjgP/YjgQ family membrane protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 360

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 115/355 (32%), Gaps = 3/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLKKSGQGSYDALGSGLYTILSVPKDIQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++   G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQAFGFTRLQVALAVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+     +    ++ L+ +   +          +          + + + 
Sbjct: 127 QGEQMARNYRAQQMYGGSLLSTQQGLWAKDGHNFVYIERVKGNDELGGVSIYAFNPERRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   D + +   L+  +      P     S M   ++           + L  
Sbjct: 187 QSVRYAASAKFDSENKVWRLSQVDESDLTDPKQVTGSQMVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q L   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDPGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  I  L L       I L ++ +K
Sbjct: 306 GVRVVTGISFGFIFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWLMMRK 359


>gi|90411866|ref|ZP_01219874.1| putative permease [Photobacterium profundum 3TCK]
 gi|90327124|gb|EAS43496.1| putative permease [Photobacterium profundum 3TCK]
          Length = 366

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 126/363 (34%), Gaps = 21/363 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R   +S L     +  +    + ++ +   +  +   +++L + G  +P++  
Sbjct: 2   IIVRYLTRETLKSQLAVLFVLFLVFISQKFIRILADATDGSIPGDLILTLMGLYMPSMAL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L LA++       +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIQAALLLAMITGSVAAFNSLWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQGIFIVDS 178
           P       Q+  + +  +    L +  F    D         I+          +  + +
Sbjct: 122 PWSSEQETQVMERVESDVGLDLLVKGQFQPAPDGKGVVFVNDITDKGSKLEKVFVAQIVA 181

Query: 179 RDTQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           RDT    +  A+ G    +D  RQ + L DG  +   P   D SI +F+ Y         
Sbjct: 182 RDTMRPSVMVAERGYVSELDDGRQILDLKDGTRYEGVPTRLDYSITEFEDYQALIGQRAI 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  +      L+  +              R+EF  R++ +L      L+++V    
Sbjct: 242 REKNRDWDALPTPTLMQHSELAA----------RAEFQWRVSMFL---CIPLLTMVVVPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            ++  ++ +   +F ++ I    F   S     + ++      + L+   +    + +  
Sbjct: 289 SSVNPRQGRFAKLFPAVLIYLVYFLAISAAKSAV-EDGSLPSYIGLWSINVVMFVVAIAL 347

Query: 356 KKY 358
             +
Sbjct: 348 NSW 350


>gi|89075941|ref|ZP_01162316.1| putative permease [Photobacterium sp. SKA34]
 gi|89048382|gb|EAR53960.1| putative permease [Photobacterium sp. SKA34]
          Length = 366

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 121/363 (33%), Gaps = 21/363 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R   +S L     +  +    + +  +   +  +   +++L   G  IP++  
Sbjct: 2   IIVRYLTRETLKSQLAVLFVLFLVFISQKFISILADATDGSIPSDLILTFMGLSIPSMAL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     L++  L LAI+      ++   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGMGNKLLLQSALALAIITGSIAAVNAFWVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSY----LEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           P  +  I+QL  + +   T +       +             I+          +  + +
Sbjct: 122 PWSQEHIEQLKEETKAGPTLNMLVKGTFQQAPNGSGVIFIDNITDKGSRLHKVFVAQLKA 181

Query: 179 RDTQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            DT    +  A +G    +   RQ + LNDG  +   P   + SI  F  Y         
Sbjct: 182 TDTLQPSVMVADNGTVKELSDGRQMLELNDGARYEGIPTQLNYSITHFNDYQALIGQREV 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                    Q    L+           +     ++E   R +         L+ ++    
Sbjct: 242 KAGDRDWEAQPTMTLI----------KDKSLAAKAELQWRFSL---VFCIPLLVMIVVPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            A+  ++ +   +  ++ I    F   S     I ++     ++ ++   I+++ + +  
Sbjct: 289 SAVNPRQGRFAKLAPAVLIYLAYFLAISSAKSAI-EDGIIPSVIGMWPINITTLLVALAL 347

Query: 356 KKY 358
             +
Sbjct: 348 NSW 350


>gi|288940379|ref|YP_003442619.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
 gi|288895751|gb|ADC61587.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
          Length = 354

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 113/355 (31%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+   +    L++   ++ +  V  +   ++ + +    L   +  +   +P  
Sbjct: 1   MRILDRYLAWAVMSGTLLTLAGLLPLMGVFILSDELDAIGTERYGLAEAMLFTLLSLPRY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L ++   +EL+ +   G S   L++  L   ++L+    +   +
Sbjct: 61  LYQLFPIATLIGALIGLGTLASRSELVAMRAAGISVGRLVRAALLGGLVLATIAVVLGEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P       +L   A             F+ +DD  Y+ I +     +L+ I I     
Sbjct: 121 VAPIAEQRAVELRRLALSGEAAQL-TPYGFWAIDDGAYVNIREIRSGTSLRDIDIYRVDA 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                      G+   D    +L    + R       +  ++   +    +      +V 
Sbjct: 180 AAGTLEASHAEGARYEDG-RWVLEGIALSRVDGEGVQVERVEHAEWDSMLDPGLLKVVVA 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                 +  L        +   +    Y   F  ++   +  +   LI+I      +   
Sbjct: 239 DPRALPVWGLY-KYIRFMSVNKQDASAYEIAFWSKVLHPVLTLSMILIAIPMLLGSSRST 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +     I + + + +       +  +     ++  +   +  I +  LL+ +
Sbjct: 298 GMGRRMLAGILVGLVYYLVSRTFAYLALLFGMNAFLAAIAPPVLFIGAAMLLLRR 352


>gi|218555553|ref|YP_002388466.1| hypothetical protein ECIAI1_3128 [Escherichia coli IAI1]
 gi|218362321|emb|CAQ99943.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli IAI1]
          Length = 386

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 124/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S +   + +
Sbjct: 208 DLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLDELSM 267

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 268 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 326

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 327 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 384


>gi|33861942|ref|NP_893503.1| putative permease [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33640310|emb|CAE19845.1| possible permease [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 400

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 127/376 (33%), Gaps = 25/376 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + +++  I    L +      I+  +  +   I  +      L + +K+  + +P+ L
Sbjct: 25  LIDRWLIAQILPPMLFAISAFTVISLSVGVMFDLIRKIVEFGLPLFLAIKVLFFSLPSFL 84

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      ++ N+ELL + + G     +I P + ++IL++   F   + +
Sbjct: 85  VLSFPMAVLLSTLLAYGKLSANSELLALKSLGIKTSRIIAPAIAVSILMTGLTFYFNDNL 144

Query: 122 EPKCRS-----------------TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY 164
            P                       K     ++                    +I  + +
Sbjct: 145 VPSSNKLAESTLRAGIGSSFSSEEGKDNIMFSRYGSRIESATNKPTKTNTFLTHIFYASW 204

Query: 165 NPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK 224
             NN +QG+ ++D       +I  A+S   D +  + I +DG +       +  +I   K
Sbjct: 205 FENNIMQGVTVLDFSRQDIQQILKAKSAVFDKENSSWIFSDGSIVSVDQGGQTTNIQFEK 264

Query: 225 -SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLFP 282
             Y       + + +   A + +L   L            + +   +    ++ T     
Sbjct: 265 YRYPFVEGPLDLARVPKDATEMSLKQALEAERIYKETGNLKEIRRIQVRIQEKFTLPFAC 324

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           ++FGLI            +  K     +S+ +   V++  S++           PI+  +
Sbjct: 325 LVFGLIGSSLG--SKSNLRSSKSQGFGLSVIL-ILVYYVMSFVFSSFGVKGLLSPIIATW 381

Query: 343 LFCIS--SIFLLMIKK 356
           L  +      +  ++K
Sbjct: 382 LPVLISMGGGIYFLRK 397


>gi|77463458|ref|YP_352962.1| putative permease [Rhodobacter sphaeroides 2.4.1]
 gi|221639316|ref|YP_002525578.1| permease Yjgp/YjgQ family protein [Rhodobacter sphaeroides KD131]
 gi|332558335|ref|ZP_08412657.1| Permease YjgP/YjgQ family protein precursor [Rhodobacter
           sphaeroides WS8N]
 gi|77387876|gb|ABA79061.1| putative permease [Rhodobacter sphaeroides 2.4.1]
 gi|221160097|gb|ACM01077.1| Permease YjgP/YjgQ family protein precursor [Rhodobacter
           sphaeroides KD131]
 gi|332276047|gb|EGJ21362.1| Permease YjgP/YjgQ family protein precursor [Rhodobacter
           sphaeroides WS8N]
          Length = 364

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/362 (11%), Positives = 96/362 (26%), Gaps = 12/362 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI R   R   +  L    +  +I +L ++   S    +L     +S   +P  L 
Sbjct: 2   ILSRYIARRFLRMVFIVFLAFFGLMMLIDVLDQMRRFSDEGITLVQAGLLSLLRVPATLY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +    +   + R++EL+++   G S +  +   + +A+ L        N I 
Sbjct: 62  TILPLIVILAAVALFLGLARSSELVVVRAAGRSGLRFLVAPMVVALALGTVAVTVLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR-----LDDDLYIKISKYNPNNTLQGIFIVD 177
                     + +                        +   I   + N + T        
Sbjct: 122 AGTSRQYDAAAGRLARGEASILSISKEGLWLRQGGSGEQTVIHALRSNTDGTRLYAVTFL 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISI--MKFKSYTLQTESANS 235
           + D +        +    L+R    L+  +    +  + +           T +      
Sbjct: 182 TFDAEGRPTGRIAAEQAALERGYWQLSGAKSWDLTEANPEARAGLPGNLRVTSELTREGI 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  +   +  L                 +R                 L++  A   
Sbjct: 242 QDSFGDPSAIPIWEL-PAYVAGLERAGFSARKHRVWMQMEFALPATLAAMVLVA--AGFT 298

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLM 353
               R       + ++L   F +F+  ++        Q P  +      L  +     L+
Sbjct: 299 MRHSRFGGTGRMVLLALLGGFSLFFLRNFAQVLGENGQIPILLAAWSPPLIGVMGSLGLL 358

Query: 354 IK 355
           + 
Sbjct: 359 LH 360


>gi|39936125|ref|NP_948401.1| permease YjgP/YjgQ [Rhodopseudomonas palustris CGA009]
 gi|39649979|emb|CAE28503.1| predicted permease [Rhodopseudomonas palustris CGA009]
          Length = 361

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 104/356 (29%), Gaps = 10/356 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            +   Y  R    + L     +  +   +  +  +        S   + + S   +P +L
Sbjct: 4   NTLGRYFARRFVIASLGVFFGLFVLLVFVDYVDLLRRAGGLAVSAFYVAQASFCRVPQLL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PFC  +       +++R+ EL++    G S    I P L+ AI + IF     N +
Sbjct: 64  ERLLPFCILIGGMTCYLALSRSLELVVARAAGLSAWEFISPALWSAIAIGIFATTVFNPL 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFR----LDDDLYIKISKYNPNNTLQGIFIVD 177
               +   KQ+ A+     T    + N F+      D    I  ++      +     V 
Sbjct: 124 SAHMQERAKQMEAEMFGENTGGLQDANGFWMNQVSPDGQAIINAARSQQQGAVLTGITVF 183

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +         ++    L+    +L +   +       D   +           A    
Sbjct: 184 RFEPDFQFKDRIEAREAVLEPGHWLLKNVRRYTMDGAPVDQDTL---ELPTSLTLAQVRN 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   +   L     ++ N        YR ++HK L +        +++   +    
Sbjct: 241 SFATPESVSFWQLPTYIKSSENSGFATAG-YRLQYHKLLAKPFLLAAMVMLAASVSL--R 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             R       +   ++  F ++          +    +         C+  +   +
Sbjct: 298 FFRFGGVQKMVLSGVAAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFL 353


>gi|50083532|ref|YP_045042.1| hypothetical protein ACIAD0254 [Acinetobacter sp. ADP1]
 gi|49529508|emb|CAG67220.1| conserved hypothetical protein; putative permease [Acinetobacter
           sp. ADP1]
          Length = 366

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 118/354 (33%), Gaps = 15/354 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +       +L  I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDAGVLFSIIGYRMPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SRI L + ++ LA++  +   I    + 
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGISRIRLGQLLIPLALVFLVIQGILMLWMT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       QLS+   +   F  +    F                   L+ IF       +
Sbjct: 122 PWGLRQFDQLSSSQAVRTGFDLVRPKEFISSGPYTIYAGDLSEDRKNLKDIFFYQRAQKE 181

Query: 183 THKIYYAQSGSI------DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                   +         +     + L  G  +   P     S  +F+ Y L+ E+  S+
Sbjct: 182 GKPDVMILAKEATRVVMENETANVVDLIQGRRYEIYPGKAKYSQAEFQRYRLRLENDKSA 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-DK 295
           T      +   S  L    N+P           SE   R+      VI  ++++      
Sbjct: 242 TFETDKVEALPSSKLWNKWNDPV--------IASEMGWRVFGPFTIVIALMMAVALCEVS 293

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
               R  + I  IFI  S+   +    + I         Y   L ++    +  
Sbjct: 294 PRQGRYYRLIPAIFIFASLIVLLIAIRTRISRDELGVWAYPAALAVYGIAAALF 347


>gi|332280200|ref|ZP_08392613.1| YjgP/YjgQ permease [Shigella sp. D9]
 gi|332102552|gb|EGJ05898.1| YjgP/YjgQ permease [Shigella sp. D9]
          Length = 386

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 124/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S +   + +
Sbjct: 208 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLDELSM 267

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 268 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 326

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 327 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYWYDR 384


>gi|124023382|ref|YP_001017689.1| permease [Prochlorococcus marinus str. MIT 9303]
 gi|123963668|gb|ABM78424.1| possible permease [Prochlorococcus marinus str. MIT 9303]
          Length = 403

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/376 (12%), Positives = 131/376 (34%), Gaps = 22/376 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  +    L +      ++  +  +   +  +      L+  L++    +P  L
Sbjct: 32  LLDRWLLGELIPVLLFAIAAFTVVSVSVGVMFDLVRKIVEFGLPLHFALQVFSLKLPFFL 91

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T    + ++ N+E   + + G S   ++ P L LA+L++   FI  ++I
Sbjct: 92  VISFPMATLLATLLAYSRLSSNSEFTALRSLGVSTRRIVAPALALALLMTGLTFIFNDVI 151

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-------------KISKYNPNN 168
            P+  S+ +    +A      +   +++ +     +                 ++     
Sbjct: 152 VPRTNSSAEVTIKRALGKAIATEKGKHVVYSRFGTITGTKAEDRNQGLSQLFYAREFLKG 211

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            ++ + ++D       ++  A+    +         +G +   +P     S ++F  Y  
Sbjct: 212 EMEDVTVLDLSRLGFTQMLKAERAIWNEQEAMWEFFNGNILTLTPSGSTTS-VEFDRYLY 270

Query: 229 QTESANSSTIVLKANDQNLS---FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
              S       L  +  N++    +   +        +     +    ++ T  +  ++F
Sbjct: 271 PLTSGPIRVAKLPKDANNMTVAQAMEAASIYTDAGNRKEARRLKVRIQEKFTFPMSCLVF 330

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           GLI      K     +  +     ISL +    ++  S+    +       P+L  ++  
Sbjct: 331 GLIGSSLGAKP--NSRTSRTQGFGISLLLILA-YYTLSFSFSSLGVTGTLTPMLAAWVPV 387

Query: 346 ISSI-FLLMIKKKYTK 360
             S+    ++ ++ ++
Sbjct: 388 FISLAGGGLLLRQASR 403


>gi|78356992|ref|YP_388441.1| permease [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78219397|gb|ABB38746.1| permease, putative [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 359

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 111/362 (30%), Gaps = 12/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+LR      +++      I  +  +  R++    +   L ++L      IP +
Sbjct: 1   MSILSRYLLRTNLFLTMLTLTIGTGIYLLSDLFDRLDDFLGAGLGLKVILTYFAVKIPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P  F +     L  M R+ EL+ +   G S + L +  +  A++ S        +
Sbjct: 61  ISQILPAVFLLSAVIQLCVMARDRELVALQAGGISFLRLARFFIIYALIWSAVQLGFSQV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +         ++  +         ++    +  +    I +   +P         V    
Sbjct: 121 LGIYGEREASRIWKEQVRNREIDEVQLTNLWFTEHGRIIHLETLHPAAQKGSGITVYELT 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF-KSYTLQTESANSSTIV 239
                +     G       +    DG         +  +            ++ +     
Sbjct: 181 PDELSVQRVIRGKSFRADSSGWTLDGCDILIPGSYEVATSESIVLPIEQDVKAFSIVDPR 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
              +   L  L +            +E  R+ +H +L+     V   L+++         
Sbjct: 241 GDPSRLPLWQLQDA-IARLTESGSNVEALRTAWHMKLSYAFSLVTMALLALALITW---- 295

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMIK 355
            +      +  SL + F VF+    +   + +N    P+   +     F +S+I  L+  
Sbjct: 296 -RDSIYINVGTSLLLVF-VFYTLFTVGGSLGENGIVPPLFAAWTANAFFSLSAIARLIYV 353

Query: 356 KK 357
            +
Sbjct: 354 SR 355


>gi|126462313|ref|YP_001043427.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103977|gb|ABN76655.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 364

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/362 (11%), Positives = 98/362 (27%), Gaps = 12/362 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI R   R   +  L    +  +I +L ++   S    +L     +S   +P  L 
Sbjct: 2   ILSRYIARRFLRMVFIVFLAFFGLMMLIDVLDQMRRFSDEGITLVQAGLLSLLRVPATLY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +    +   + R++EL+++   G S +  +   + +A+ L        N I 
Sbjct: 62  TILPLIVILAAVALFLGLARSSELVVVRAAGRSGLRFLVAPMVVALALGTVAVTVLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR-----LDDDLYIKISKYNPNNTLQGIFIVD 177
                     + +                        +   I   + N + T        
Sbjct: 122 AGTSRQYDAAAGRLARGEASILSISKEGLWLRQGGSGEQTVIHALRSNTDGTRLYAVTFL 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--ISIMKFKSYTLQTESANS 235
           + D +        +    L+R    L+  +    +  + +   S+      T +      
Sbjct: 182 TFDAEGRPTGRIAAEQAALERGYWQLSGAKSWDLTEANPEARASLPGNLRVTSELTREGI 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  +   +  L                 +R                 L++  A   
Sbjct: 242 QDSFGDPSAIPIWEL-PAYVAGLERAGFSARKHRVWMQMEFALPATLAAMVLVA--AGFT 298

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLM 353
               R       + ++L   F +F+  ++        Q P  +      L  +     L+
Sbjct: 299 MRHSRFGGTGRMVLLALLGGFSLFFLRNFAQVLGENGQIPILLAAWSPPLIGVMGSLGLL 358

Query: 354 IK 355
           + 
Sbjct: 359 LH 360


>gi|260772182|ref|ZP_05881099.1| predicted permease [Vibrio metschnikovii CIP 69.14]
 gi|260613049|gb|EEX38251.1| predicted permease [Vibrio metschnikovii CIP 69.14]
          Length = 367

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/347 (14%), Positives = 120/347 (34%), Gaps = 19/347 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S       ++L I    +P +  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPARMILSIVALNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LAI+ S     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLAIITSSAAAFNAFWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD--SRD 180
           P  +    QL  +     +   L++  F R  D   +       N  LQ +F+     R 
Sbjct: 122 PWSQDKEAQLIEQLAAESSVDLLQKGQFQRSPDGSSVVFIDNIENRKLQNVFVAQLAPRQ 181

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG +      RQ I +++G  +   P   D  I +F  Y       +   
Sbjct: 182 SILPSVMFSDSGEVKELSDGRQMITMHNGVRYEGVPTRLDYMITRFDQYEGLIGQRSVKA 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                 +     L+                 ++E   R++     +   L++++     A
Sbjct: 242 KGRDWQETPTLALIR----------NPDSRAQAELQWRISL---VLCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           +  ++ +   +  ++ I    F   S +   + ++      + ++  
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLTISAMKSAL-EDGTIPIEIGMWPI 334


>gi|120553895|ref|YP_958246.1| permease YjgP/YjgQ family protein [Marinobacter aquaeolei VT8]
 gi|120323744|gb|ABM18059.1| permease YjgP/YjgQ family protein [Marinobacter aquaeolei VT8]
          Length = 353

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 105/355 (29%), Gaps = 4/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y++R +G +  +  + ++ +  +   +  +   + +       L      +P  
Sbjct: 1   MHKIDGYVMRTVGGAMFLVMVVVLSLDVIFAFIAELED-TRNEYQTLQALWYVALTLPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    M     L SM  ++EL +I   G S   ++   +  A+++ +        
Sbjct: 60  IYDYLPLGAFMGCLVGLGSMASSSELTVIRAAGVSLKRIVWSAMKPALIVVLLGVAIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   A A  A +     E ++ R  +      +                  
Sbjct: 120 VAPTTERIAQSDKAVALGAGSSVASAEGVWHREGNTFMHLNAVQPNGVLHGVSLFRFDDA 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q     +A+      D    +L +    R  P      +     +      +  S +++
Sbjct: 180 RQLQVASFAERAIYQGD--YWLLENVTSTRIEPERTVRDVSASLRWETGLSPSVLSVLIV 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K  + +++ L          +      Y   F K+    L   +  L++I          
Sbjct: 238 KPENLSMTGLY-TYAAYLGEQGLSAAQYWLAFWKKALMPLGTAVMVLVAISFVFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                    + + + F         +  +      I +L   +       +LM +
Sbjct: 297 TMGFRVFTGLLVGLLFKYMQDLLGPMSMVYGFNPLIAVLAPIVVNGIVGAVLMRR 351


>gi|312968689|ref|ZP_07782898.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|312286907|gb|EFR14818.1| conserved hypothetical protein [Escherichia coli 2362-75]
          Length = 359

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 121/354 (34%), Gaps = 3/354 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N       + I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVDVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     +      + ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETQETSDYLAWQSTFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                  + + + +    +  +  +++         P+  L L     +  L +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351


>gi|114326914|ref|YP_744071.1| hypothetical protein GbCGDNIH1_0250 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315088|gb|ABI61148.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 355

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 118/358 (32%), Gaps = 4/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E Y      ++  +S + +  +  +++ +Q++  V      +          IP  
Sbjct: 1   MKK-ERYAAMAALKAVGLSAIALTALFSLLEFVQQLASVGQGRYGMLDAAIYVALTIPYR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P    + T   L  + RN EL  +   G S   +I  V+  +I L + LF+    
Sbjct: 60  LLQVFPVSMLIGTLLGLGGLARNGELTALRGLGMSERRIILSVIAFSIPLMVILFLMAQF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +   +   + A L  T +   ++ F+   D  ++ I  +  ++    I I     
Sbjct: 120 VIPPAQREAQTWRSNA-LPDTTALRSQDSFWAYGDRHFLNIQHFEHHDEPYNIDIFSFAP 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                 Y     +  L     +L+D             + +    +T       +  + L
Sbjct: 179 DGELHRYLHAQSADILPNDRWVLHDVLSRTLVDGQLRKAHLDRLDWTPFLTPQQTQFLRL 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           + +      L     ++   R      Y  E   +++  L  +   + +         V+
Sbjct: 239 RPDAMPPLAL-WRYVHSLKQRGLQAIRYEQELWAKISIPLTMMAMVIAATPFVFGGGRVQ 297

Query: 301 QRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +  ++ + F  V     ++   +  NP    +    L     I L   +++
Sbjct: 298 NTGAFIALGAAIGVVFTLVQQISGHLDVLLNLNPAVTALTPPVLLMWLGIDLFYRRQR 355


>gi|229588598|ref|YP_002870717.1| putative ABC transporter membrane protein [Pseudomonas fluorescens
           SBW25]
 gi|229360464|emb|CAY47321.1| putative ABC transport system, membrane protein [Pseudomonas
           fluorescens SBW25]
          Length = 359

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/361 (12%), Positives = 115/361 (31%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     I+ +A +   +  +  V S T ++  +L       P  
Sbjct: 1   MAKLDRYIGSSVLIAILAVLGIILGLASLFAFIDEVGNV-SDTYTVWDVLSYVALTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  ++EL I+   G S   ++  V+   +LL     +    
Sbjct: 60  LYDMMPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMACSVLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +T +   A AQ +      +  L+ R  ++     +       +        ++
Sbjct: 120 VAPPAETTAQANRALAQGSGDAQSSKHGLWHRQGEEFIHINAVQPGGLLIGVTRYTFDKE 179

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
               +  +A+      ++             + + +    ++  +  + + +  +    +
Sbjct: 180 RHLLESSFAKRAQYSGEKWQLSDVTTTYFRNIGQGTNARTEVINVPSEEWDIALKPELLN 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T+V+      +S L     +    +      Y   F  ++ Q +      L++I      
Sbjct: 240 TVVMIPESLPISGL-WSYIHYLKDQGLNNGRYWLAFWVKVLQPVVTAALVLMAISFIFGP 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R       +F  + + F        +        +      L    I ++    + +
Sbjct: 299 L--RSVTLGQRVFTGVLVGFTFRIAQDLLGPSSLVFGFSPLFAVLVPTAICALAGFWLLR 356

Query: 357 K 357
           +
Sbjct: 357 R 357


>gi|91977435|ref|YP_570094.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
 gi|91683891|gb|ABE40193.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
          Length = 361

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 102/357 (28%), Gaps = 10/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M +   Y       S L     +  +   +  +  +        S  ++ + S Y +P +
Sbjct: 3   MNTLGRYFAARFVTSALGVFFGLFVLLVFVDYIDLLRRAGGLAVSALVIAQASFYRVPQL 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + PFC  +       +++R+ EL+I    G S    + P L+ A+ L +F     N 
Sbjct: 63  LERLMPFCILIGGMTCYLALSRSLELVIARAAGLSAWEFVSPALWSALALGVFASAVFNP 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFR----LDDDLYIKISKYNPNNTLQGIFIV 176
           +    +   KQ+ A+     + S  + + F+      +    I  ++      +     V
Sbjct: 123 MSAYMQERAKQMEAELFGQGSGSLQDASGFWMNQVSPEGQSIINAARSQQQGAVLSGISV 182

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              +         ++    L+    +L D   +                       A   
Sbjct: 183 FRFEPDFQFKDRIEAREAVLEPGHWLLRDVRRYTLDSAPVQEDTF---RLPTALTLAQVR 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                    +   L +               YR ++HK L +        +++   +   
Sbjct: 240 NSFATPESVSFWQLPS-YIRASESSGFATSGYRLQYHKLLAKPFLLAAMVMLAASVSL-- 296

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              R       +   +   F ++          +    +         C+  +   +
Sbjct: 297 RFFRFGGVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFL 353


>gi|107103348|ref|ZP_01367266.1| hypothetical protein PaerPA_01004417 [Pseudomonas aeruginosa PACS2]
          Length = 362

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 120/356 (33%), Gaps = 25/356 (7%)

Query: 12  IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAM 71
           +  +       ++ I    + ++ +   +        L  I  + IP  L ++ P    +
Sbjct: 1   MLVTMSAVSAVLLVIIMSGRFIKYLAQAAQGLLDPGSLFLIMAFRIPGFLQLILPLGLFL 60

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
                   +   +E+ ++  TG S+  L+   +  A+L++I +      + P+  +    
Sbjct: 61  GILLAYGRLYLESEMTVLSATGMSQKRLLGYTMAPALLVAILVAWLSLFLAPQGINQFAL 120

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQS 191
           L  K      F  L    F  + D   +  ++    +  +   I  S+            
Sbjct: 121 LLNKQDTLTEFDTLVPGRFQAMRDGTRVTYTEELSKDRGELAGIFISQKDLNSSNQERGI 180

Query: 192 GSID----------LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
             +              + +IL++G  +  +P   +   +++ +Y +      +S+ V +
Sbjct: 181 SILVAEKGTQNIQADGSRYLILHNGYRYDGNPGQANYRAIQYDTYGVMLPKPEASSEVSE 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            +    + L                 Y++E   RL+  L   +  L+++       +  +
Sbjct: 241 RDAVPTADLF----------GSDNPRYQAELQWRLSTPLLVFVVTLLAVPL---SRVNPR 287

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIK 355
           + +   +  ++ +  G       +  ++   + P  I + ++    ++   LL   
Sbjct: 288 QGRFLKLLPAILLYMGYLALLIAVRGQLDKGKIPMAIGLWWVHGLFLAIGLLLFYW 343


>gi|218696688|ref|YP_002404355.1| hypothetical protein EC55989_3395 [Escherichia coli 55989]
 gi|218353420|emb|CAU99485.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli 55989]
          Length = 386

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 126/360 (35%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ V+         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVNPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + + I+   ++     S N   + +
Sbjct: 208 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNLEELSM 267

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   N      +    YR    ++L   +  +   L+++          
Sbjct: 268 PGNSFSVRQL-NHYINYLQETGQPSSEYRLALWEKLGHPILTLAMILLAVPFTFSAPRSP 326

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L++   + +
Sbjct: 327 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALILVYLFDR 384


>gi|83596032|gb|ABC25390.1| predicted permease YjgP/YjgQ family superfamily [uncultured marine
           bacterium Ant39E11]
          Length = 359

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/359 (12%), Positives = 104/359 (28%), Gaps = 6/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK-ISGYLIPT 59
           M   + YIL     +F +    I+ IA V  + Q+++    +  +L  +L       I  
Sbjct: 1   MNRVDRYILSKFLGNFALFMGLIMLIAMVFDVSQKLDDFMDNDLNLATILLDYYLNFIAF 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                +     + T      M    E+  +   G S   L++P L  A ++ +      +
Sbjct: 61  YGNTFSALILFLSTVFFTARMANQGEISAMLTGGLSFGRLMRPYLIGAAVICLASASLSH 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I P   S+              S         L        +                 
Sbjct: 121 FIIPGTNSSRIAFEEAYIQHRVTSRPIHLHRQVLPGHFIYVETWSPDRMGGYNFTYEHFE 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD-ISIMKFKSYTLQTESANSSTI 238
             +      A     D  + +  +++  + +        ++       +        S+ 
Sbjct: 181 QGRMVDRLKASFIKYDSAKTSWHMDNWTLRQWQSNGHMSLTSGVRLDSSFAFLPQQFSSN 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L            E +  Y  E+++R    L   I  LI+   A   + 
Sbjct: 241 NRGIETMTSPELYKALKQVRLSGSEAVLFYEMEWYRRSAYPLSAFILVLIAAAMA---SR 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            ++      I + L ++  ++     +   +       P++ +++  I  + + M+  +
Sbjct: 298 SQRGGIGAQIALGLLVAV-LYIFLMQLSSTLASTHVTSPLVAVWVPNILFLGVAMLAYR 355


>gi|326568200|gb|EGE18282.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis BC8]
          Length = 442

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/368 (13%), Positives = 129/368 (35%), Gaps = 21/368 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   +  +  +   F+V I    ++++   + +    ++ +L ++ GY  P  L 
Sbjct: 62  ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYNFPYFLE 121

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  + + ++ L ++L         + +
Sbjct: 122 LILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVAK 181

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-----------YNPNNTLQ 171
           P        +  +  +A  F  +    F    D                       +T +
Sbjct: 182 PWGMERATNIWQEQSVAQVFDLIRPQEFISSGDYHLYVGEMGANREFLKDVIIIQMHTAE 241

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAII---LNDGEVHRKSPISKDISIMKFKSYTL 228
              I   +  +   I +A+S +        I   L  G  +   P S+  S + F+ Y +
Sbjct: 242 PSDIQSRQSHKRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGFERYRM 301

Query: 229 QTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
                    T  ++    + + LL+      + + +  +   +E   RL+     ++   
Sbjct: 302 TLSVKPPEGTSHIRIEGVSTTELLS--IIQGHSKRDNPQEAYAELGYRLSMPWLILLAI- 358

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
             ++A     +  ++ + + +  ++ I          +   I +     P++YL    + 
Sbjct: 359 --LLATPLSYVRPRQGRWYKLVPAILIYVAGVLVVISLKDTIAK-GKLSPVIYLAALLMM 415

Query: 348 SIFLLMIK 355
            +  + + 
Sbjct: 416 MVVAMYLN 423


>gi|83953613|ref|ZP_00962334.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. NAS-14.1]
 gi|83841558|gb|EAP80727.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. NAS-14.1]
          Length = 365

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 112/357 (31%), Gaps = 16/357 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              LY  R     F++    +  +  ++ ++ +    SS       L  ++    P  + 
Sbjct: 2   ILHLYFARRFIMGFILISAVLFSLLVLVDMVDQARRFSSYDIGWLRLFGMTLLKTPETMN 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    + T  +  S+ R++EL++    G S ++ ++  +++A ++ +      N I 
Sbjct: 62  LILPLIMILATVVLFLSLARSSELVVTRAAGRSALSALQAPIWVAFIIGVMAVGMLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-------LYIKISKYNPNNTLQGIFI 175
                   QLS   +   T      +    L          +    S  + +      F+
Sbjct: 122 AATAKRYIQLSDSIRAGGTSVLSVSDEGLWLRQGSDEGQTVIRAWRSNKDASVLYDVTFL 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI---SKDISIMKFKSYTLQTES 232
             + ++   +   A S ++  +     L D +                    +       
Sbjct: 182 SYAPESGPARRIEADSAAL--EDGIWTLTDAKSWPLEVGVNAEGAAETFDTLTLPSTLTL 239

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                 +      ++  L +               ++      L +  F V   L++   
Sbjct: 240 DRIRDSITDPGAVSIYDLPD-YIKQLELAGFSPRRHKVWLQTELARPFFLVAMVLVASAF 298

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                  R       +  S+ + FG+++  S+    + +N     +L  +   ++SI
Sbjct: 299 --TMRHTRFGGTGVAVLASVLMGFGLYFIRSFAQ-ILGENGQIPVLLAAWAPPVASI 352


>gi|330448737|ref|ZP_08312384.1| putative transmembrane possibly involved in transport conserved
           inner membrane protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492928|dbj|GAA06881.1| putative transmembrane possibly involved in transport conserved
           inner membrane protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 366

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 122/357 (34%), Gaps = 21/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R   +S +     +  +    + ++ +   S  +   ++++ + G  IP++  
Sbjct: 2   IIVRYLTRETLKSQIAVLFVLFLVFISQKFIRILADASDGSIPSDLIMTLMGLSIPSMAL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     L++  L LAI+      ++   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGMGNKLLLQSALALAIITGSIAAVNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQGIFIVDS 178
           P  +  ++Q+  KA+     + L +  F +  D         I++     +   I  + +
Sbjct: 122 PWSQDHVEQVMEKAKAGPGLNMLVKGTFQQTPDGKGVVFVDDITEKGSKLSKVFIAQLKA 181

Query: 179 RDTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            +T    +  A  G I      RQ + LNDG  +   P   + SI  F +Y         
Sbjct: 182 TETLQPSVMVADRGLITEQPDGRQMLELNDGTRYEGIPTQLNYSITHFNNYQALIGQREV 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                         L+           E     ++E   R +     +   L+ ++    
Sbjct: 242 KQGNRDWEALPTLDLM----------KESNLAAKAELQWRFSL---ILCIPLLVMIVVPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFL 351
            A+  ++ +   +  ++ I    F   S     IE       I ++        + L
Sbjct: 289 SAVNPRQGRFAKLAPAVLIYLAYFLAISSAKSAIEDGIIPSGIGMWPINIATLLVAL 345


>gi|300973447|ref|ZP_07172203.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|301048206|ref|ZP_07195242.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|300299964|gb|EFJ56349.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|300410789|gb|EFJ94327.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|315291259|gb|EFU50619.1| conserved hypothetical protein [Escherichia coli MS 153-1]
          Length = 359

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 121/354 (34%), Gaps = 3/354 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 GASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     +      + ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETQETSDYLAWQSTFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                  + + + +    +  +  +++         P+  L L     +  L +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351


>gi|257095655|ref|YP_003169296.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048179|gb|ACV37367.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 357

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 117/361 (32%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK +  Y+ R +  + L+  L  + +     +L  I  V      L+         IP  
Sbjct: 1   MKLYRRYVGREVMGAVLLVLLGFLALFAFFDMLGEIRNVGQGGYQLHHAFAFVLLRIPGR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + T   L+++ R++E+ ++  +G S   L+  +  +A +L++  F+    
Sbjct: 61  VYELMPIAVLIGTLYALSTLARHSEITVLRVSGLSSGGLLTVLFQVAGVLAVLTFLIGEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P       QL +K +  +    L   L+ + +                         D
Sbjct: 121 VAPPSERAAFQLRSKERTGMVGQDLRSGLWVKDERSFINVRIVLPDTRLRGIRIFEFDED 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   +  A  G   +   +  L +           ++  +    +         + +++
Sbjct: 181 AKLRSMTEAAEGEYVVPD-SWRLTNVVQTVLEGGRAEVRSVPDMQWRSALNPDILAVLLV 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  +L  L +    +     +    Y   F K++   L  ++   +++      A  R
Sbjct: 240 SPDRMSLRHL-SAYTKHLADNHQTTNRYDIAFWKKVIYPLAGLVMVALALPFG--GAHSR 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF----LLMIKK 356
                  IF+ + I            +    N +   +       +  +     +  ++K
Sbjct: 297 VEGVGLKIFVGVMIGTLFHMLNGLFSNLGAINHWSPLLSAATPSILFLLAATAMIWWVEK 356

Query: 357 K 357
           +
Sbjct: 357 R 357


>gi|313203772|ref|YP_004042429.1| permease yjgp/yjgq family protein [Paludibacter propionicigenes
           WB4]
 gi|312443088|gb|ADQ79444.1| permease YjgP/YjgQ family protein [Paludibacter propionicigenes
           WB4]
          Length = 367

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 128/352 (36%), Gaps = 6/352 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    ++  S + I+ I+ V  I ++++   S    L  I+L      IP 
Sbjct: 11  LKRIDTYIIKKFLGTYFFSIVLILSISVVFDITEKLDNFVSHNAPLKAIVLDYYLNFIPF 70

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + M +P    +      + M  NTE++ I ++G S   L+ P +  A +++   F    
Sbjct: 71  YMNMFSPLFTFIAVIFFTSKMATNTEIIAILSSGVSFRRLMLPYMISAAVIATISFTLGG 130

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P     +     K  +         NL   +   + + I ++  +N     F ++  
Sbjct: 131 FVIPHGTKKMLDFEDKY-VRQIKQSNATNLQMEVAKGVIMYIGRFEVSNNTGYQFSLEKF 189

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +T                +  +++      + + + I+    K  T+  +        
Sbjct: 190 EGKTLASRLTAETITWDSLYSWKISNYLQRDFNGMREQITKGISKDTTIMVQPEEFYITA 249

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +A   ++  L +            ++ +  +++KR +  L   I  LI +      +  
Sbjct: 250 AEAPQMSIVKLGSYLKRQRERGVGNIKLFEDDYYKRFSMPLAAFIMTLIGVSL---SSRK 306

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            +      + + L++S  ++  FS +      N        +++  +  + +
Sbjct: 307 VRGGMGLHLGVGLALS-AIYILFSAMSTSFSVNGSMSAFAAVWIPNVVFLLV 357


>gi|317477038|ref|ZP_07936280.1| hypothetical protein HMPREF1016_03264 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316906831|gb|EFV28543.1| hypothetical protein HMPREF1016_03264 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 393

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 118/363 (32%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S       I+       IP 
Sbjct: 35  LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWEAIIFDYYMNFIPY 94

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F   +
Sbjct: 95  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVTTFCLGS 154

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + PK   T      K       +             +       + + T     +   +
Sbjct: 155 YVIPKGSVTRLNFEDKYYKPRKSTTARNIQLEVDSGVIAYIERFEDYSKTGYRFSLDKFK 214

Query: 180 DTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           D Q      A+S + D        + D  +     + + I   +     L  E A+   +
Sbjct: 215 DKQLVSHLTARSITYDTATVHKWTVKDYMIREMDGMRESIVKGEKMDTILFMEPADFLIM 274

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        L              ++ +  E+HKR+       I  LI +      + 
Sbjct: 275 KNQQEMLTSPQLSEYINRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSL----SS 330

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKK 357
            + +  +             +  F  I      N    P + +++   + +     + KK
Sbjct: 331 KKTKGGMGLHLGIGLGLSFSYILFQTIASTFAVNGNVPPFIAVWIPNLLYAFIAFYLYKK 390

Query: 358 YTK 360
             K
Sbjct: 391 APK 393


>gi|258542096|ref|YP_003187529.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256633174|dbj|BAH99149.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256636231|dbj|BAI02200.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
 gi|256639286|dbj|BAI05248.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
 gi|256642340|dbj|BAI08295.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
 gi|256645395|dbj|BAI11343.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
 gi|256648450|dbj|BAI14391.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
 gi|256651503|dbj|BAI17437.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654494|dbj|BAI20421.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
          Length = 370

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/358 (11%), Positives = 100/358 (27%), Gaps = 13/358 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   YI R    S +     +  I  +   +  +  V++    S N++ +I+   +P   
Sbjct: 6   TLSRYIARQFVFSVVAMIASLTGIVCLFDFIDLLRRVATKPDVSTNVVTEIAALHVPYFA 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +        + R++EL++    G S    +   +  A+L+        + +
Sbjct: 66  TEILPFGMLLGGIVCFWRLTRSSELIVARAAGISAWQFLTAPVACAMLIGAVFTTLISPV 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--R 179
                   ++L  +            +    L                 +G+ + D   R
Sbjct: 126 SSSMYRRAEELDQQYLRTGGGPLSLSSGSLWLRQSDSQYDPHGVAMLHARGVQLKDGLLR 185

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI------SKDISIMKFKSYTLQTESA 233
                         + +  +A     G +            +  +  +            
Sbjct: 186 IRNVSVFRLDHQDKLMMRIEAPEGYLGTLKWILSDASVVRPNDLLHHVGQIDLPTDLTVN 245

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                       ++  L     +  +        +R  F   L   +      L++  A 
Sbjct: 246 RVQESFSSPETLSVWAL-PGFISLLDRSGFSSIRHRIHFQSLLALPMLAGTMALVA--AG 302

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                 R+      I   ++  F +F   S +  +   +    P+L  +   ++ + L
Sbjct: 303 FSMRPSRRGGVARMIGSGVAAGFLLFTV-SKVAEQFGNSGALPPMLAAWAPTLAGLCL 359


>gi|312959169|ref|ZP_07773688.1| membrane protein [Pseudomonas fluorescens WH6]
 gi|311286939|gb|EFQ65501.1| membrane protein [Pseudomonas fluorescens WH6]
          Length = 359

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 119/361 (32%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     I+ +A +  ++  +  + + T ++  +L       P  
Sbjct: 1   MVKLDRYIGSSVLIAILAVLGIIIGLASLFAMVDEMKSI-NDTYTVWNVLNYVLLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  N+EL I+   G S   ++  V+   +LL +   +    
Sbjct: 60  LYEMMPMAALIGCLIGLGSLASNSELTIMRAAGVSIGRIVWAVMKPMLLLMVCSVLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +T +   A AQ +      +  L+ R  D+     +       +        ++
Sbjct: 120 VAPPAEATAQANRALAQGSGDAQSAKHGLWHRQGDEFIHINAVQPGGLLIGVTRYRFDKE 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHR----KSPISKDISIMKFKSYTLQTESANSS 236
                  +A+S     ++  +        R     +  S ++  +  + + +  +    +
Sbjct: 180 RHMLSSSFAKSAQYSNEKWQLTDITTTYFRNVGQGTQASTEVINVPSEEWGISLKPELLN 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T+V+      +S L     +    +      Y   F  ++ Q +      L++I      
Sbjct: 240 TVVMIPESLPISGL-WSYIHYLKDQGLNNGRYWLAFWVKVLQPVVTAALVLMAISFVFGP 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R       +F  + + F      + +        +      L    I ++    + +
Sbjct: 299 L--RSVTLGQRVFTGVLVGFIFQIAQNLLGPLSLVFGFSPLFAVLVPTTICALAGFWLLR 356

Query: 357 K 357
           +
Sbjct: 357 R 357


>gi|218691270|ref|YP_002399482.1| hypothetical protein ECED1_3629 [Escherichia coli ED1a]
 gi|218428834|emb|CAR09635.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli ED1a]
          Length = 386

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 123/354 (34%), Gaps = 3/354 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A      + +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S N   + +
Sbjct: 208 DLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNLEELSM 267

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 268 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 326

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                  + + + +    +  +  +++         P+  L L     +  L +
Sbjct: 327 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 378


>gi|302345342|ref|YP_003813695.1| permease, YjgP/YjgQ family [Prevotella melaninogenica ATCC 25845]
 gi|302149873|gb|ADK96135.1| permease, YjgP/YjgQ family [Prevotella melaninogenica ATCC 25845]
          Length = 405

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 117/358 (32%), Gaps = 7/358 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTVL 61
             + YI++    +++ + L I+ IA V    + ++  +        I+       +P   
Sbjct: 47  ILDWYIIKKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFVPYYS 106

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            + +P    +      + +  N+E++ +   G S   L++P +   IL++   F   + +
Sbjct: 107 NLFSPLFVFIAVIFFTSKLAGNSEIISMMAAGMSIRRLMRPYMISCILIAGLTFYLNSFV 166

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      +   +  + +   +  E    F   +         +      G  +V +++ 
Sbjct: 167 IPHGTVIRQNFESLYRNSKKNTSAENVQLFVAKNTTAYIQHYDDQYKRGYGFSLVKTKNK 226

Query: 182 QTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +      A     D     +    +++ ++     + + I     K   L  E  +    
Sbjct: 227 KIVSHMTAMEIQYDTVADTKYHWKVSNWKIRTLKGLKEHIQSGASKDTVLLMEPTDLVYS 286

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        LLN      +     +  Y  EFHKR+       I  +I +      + 
Sbjct: 287 KGQQETFTSPELLNYISKQTSRGSGNVVQYEVEFHKRIAMSFSSFILTIIGLSL---SSR 343

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            R+      + I L++SFG     +       ++     +       I +I      +
Sbjct: 344 KRKGGMGLYLGIGLALSFGYIMLQTVSATFAIKDDTPPILAAWIPNIIFAIIAYFCYR 401


>gi|326559485|gb|EGE09908.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis 7169]
 gi|326566095|gb|EGE16252.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis BC1]
 gi|326567798|gb|EGE17902.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis 12P80B1]
 gi|326572163|gb|EGE22159.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis BC7]
          Length = 437

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/368 (13%), Positives = 129/368 (35%), Gaps = 21/368 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   +  +  +   F+V I    ++++   + +    ++ +L ++ GY  P  L 
Sbjct: 57  ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYNFPYFLE 116

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  + + ++ L ++L         + +
Sbjct: 117 LILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVAK 176

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-----------YNPNNTLQ 171
           P        +  +  +A  F  +    F    D                       +T +
Sbjct: 177 PWGMERATNIWQEQSVAQVFDLIRPQEFISSGDYHLYVGEMGANREFLKDVIIIQMHTAE 236

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAII---LNDGEVHRKSPISKDISIMKFKSYTL 228
              I   +  +   I +A+S +        I   L  G  +   P S+  S + F+ Y +
Sbjct: 237 PSDIQSRQSHKRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGFERYRM 296

Query: 229 QTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
                    T  ++    + + LL+      + + +  +   +E   RL+     ++   
Sbjct: 297 TLSVKPPEGTSHIRIEGVSTTELLS--IIQGHSKRDNPQEAYAELGYRLSMPWLILLAI- 353

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
             ++A     +  ++ + + +  ++ I          +   I +     P++YL    + 
Sbjct: 354 --LLATPLSYVRPRQGRWYKLVPAILIYVAGVLVVISLKDTIAK-GKLSPVIYLAALLMM 410

Query: 348 SIFLLMIK 355
            +  + + 
Sbjct: 411 MVVAMYLN 418


>gi|320539288|ref|ZP_08038958.1| putative conserved inner membrane protein [Serratia symbiotica str.
           Tucson]
 gi|320030680|gb|EFW12689.1| putative conserved inner membrane protein [Serratia symbiotica str.
           Tucson]
          Length = 356

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/354 (11%), Positives = 113/354 (31%), Gaps = 2/354 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++  V     ++      +   +P  + +
Sbjct: 5   LDRYIGKTIFNTIIMTLFMLVSLSGIIKFVDQLRRVGQGDYTVLGAGMFTLLSVPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  +   +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGQLATRSELVVMQASGFTRMQIAGSVMKTAIPLVLLTMAIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +    +       Q+        ++  +  D + +I I + +    L G+ I    D + 
Sbjct: 125 QG-DQMAHDFRAQQMYGGSLLSTKSGLWAKDGNDFIYIERVSGEKELAGVNIYHFNDRRR 183

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            +     + +   D    +         +      +      +           + L   
Sbjct: 184 LETVRYAATASFEDGVWKLSQVDTSDLTNEELVTGTQTLTGEWKTNLTPEKLGVVALDPT 243

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++  L N          +    Y+     ++   L   +  L+++             
Sbjct: 244 SLSIKGLHN-YVKYLKQSGQEANRYQLNMWNKIFSPLSVAVMMLMALSFIFGPLRSVPMG 302

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 IS    F V       +  +   P  +  L   +  +     +++K+K
Sbjct: 303 IRVVTGISFGFLFYVLDQIFGQLSLVYNMPPVLGALLPSMMFLLISMYMLLKRK 356


>gi|260779401|ref|ZP_05888292.1| predicted permease [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604491|gb|EEX30791.1| predicted permease [Vibrio coralliilyticus ATCC BAA-450]
          Length = 367

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 118/353 (33%), Gaps = 19/353 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     +  +    ++++ +   S      ++++      +P++  
Sbjct: 2   IIVRYLIRETLKSQLAIFFILFLVFLSQKLIKVLADASDGDIPASLVMHYVSLSMPSMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++  +    +  +  
Sbjct: 62  LMLPLSLFLGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLAVITGVIAAANAFVFS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +  + QL  + +   +   L++  F    D   +          L+ +F+   R   
Sbjct: 122 PMSQEKLIQLQEEVEAENSVDLLQKGQFQGTPDGSSVVFIDDIEGKQLKHVFVAQMRPRD 181

Query: 183 T-----HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +           +   +   RQ I + DG  +   P   D  +  F  Y       +   
Sbjct: 182 SILPSVSFSQSGEVKELSDGRQVIRMYDGTRYEGVPTRVDYMVTDFDQYEGLIGQRDVKP 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       L++                ++E   R++     V   L++++     A
Sbjct: 242 KGRDWEAIPTMQLVS----------NPDPRAQAELQWRISL---VVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
           +  ++ +   +  ++ I    F   S     + ++      + ++    + + 
Sbjct: 289 VNPRQGRFAKMGPAILIYLAYFLSISATKSAL-EDGSIPSFIGMWPINAALLL 340


>gi|261819786|ref|YP_003257892.1| permease YjgP/YjgQ family protein [Pectobacterium wasabiae WPP163]
 gi|261603799|gb|ACX86285.1| permease YjgP/YjgQ family protein [Pectobacterium wasabiae WPP163]
          Length = 370

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 129/353 (36%), Gaps = 14/353 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N+++ + G  +P ++ 
Sbjct: 2   IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVISLLGLGVPEMVQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G  +  L+K  L LA+   I   I+   + 
Sbjct: 62  LILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALVLAVFTGIIATINVMWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +++ A+A+     + L E  F        +        +  Q +F+   R + 
Sbjct: 122 PWSSRHQEEVLAEAKANPGMAALVEGQFQSAQGGNAVLFVGNVKGSEFQHVFLAQLRPSG 181

Query: 183 T--HKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                +  A  G I  +  A +  L++G  +  + + +D  I  F +Y         +  
Sbjct: 182 NARPSVVVADRGHITNEEGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQAVTLN 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                  ++  L N + ++           R+EFH RLT  L  +I  L+ +  +     
Sbjct: 242 NSDVQQMDMRTLWNSDAHDA----------RAEFHWRLTLILSVLIMALMVVPLSVVNPR 291

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             +   + P  +   I F +         K + +P     L   ++   +I L
Sbjct: 292 QGRVLSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWVWLTNLMYFGIAIML 344


>gi|262370181|ref|ZP_06063508.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262315220|gb|EEY96260.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 366

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 122/361 (33%), Gaps = 17/361 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +       IL  I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDAGILFSIIGYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + ++ + ++      +    + 
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRNQLGRLLIPMTVVFLAVQAVLMLWMA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +QL+    +   F  +    F                   L+ IF     + +
Sbjct: 122 PWGVRQFEQLTTSQAVRTGFDLVRPKEFISSGPYTIYAGDLSEDRKNLKDIFFYQRAEAE 181

Query: 183 THKIYYA-----QSGSIDLDRQAII-LNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                           I+ D   ++ L  G  +   P     S  +F+SY L+ E+   +
Sbjct: 182 GKPDVMILAKEATRVEIENDPANVVDLVQGRRYEIYPGQPRYSQAEFQSYRLRLENDKEA 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  +   +  L  N N+P            E   R+      V+     ++A    
Sbjct: 242 KFESADVEALSTMKLWDNRNDPVVAS--------ELGWRIFVPFAIVVAL---LLAVALS 290

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            +  ++ +   +F +L I   +      I  ++ +    I    L L   +    L  +K
Sbjct: 291 EVSPRQGRYLKLFPALLIFASLIVALMAIKTRVSKEEVGIGAYPLILVIYAIAAALFSRK 350

Query: 357 K 357
           +
Sbjct: 351 Q 351


>gi|89094618|ref|ZP_01167555.1| hypothetical protein MED92_00295 [Oceanospirillum sp. MED92]
 gi|89081088|gb|EAR60323.1| hypothetical protein MED92_00295 [Oceanospirillum sp. MED92]
          Length = 358

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 123/354 (34%), Gaps = 21/354 (5%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
                  ++ I    + ++ ++  ++     ++L  I  Y +P  L ++ P    +    
Sbjct: 1   MFAVSAVLLVIIMSGRFVKYLSRAAAGELDPSVLFSIMAYRLPGFLELILPLGLFLGFLL 60

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
               +   +E+ +++ TG S+  L+   +  AI +++ +      + P   S   ++   
Sbjct: 61  GYGRLYLESEMTVLEATGMSQKRLVSYSMGPAIFVAVIVGSLSLFVSPYGASETNKIFDD 120

Query: 136 AQLALTFSYLEENLFF-RLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQS--- 191
            +       L    F    +        +   + TL  +F+ D   +             
Sbjct: 121 QEGRSELESLVPGRFQKNKNTGRVTYTDEVKDDGTLGLVFMADRNHSTQRLQITVAETGS 180

Query: 192 --GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSF 249
                D  ++ ++L +G  +   P   D   ++FK Y  + E  N      K      + 
Sbjct: 181 TLIDQDKGQRFLVLEEGYRYEGEPGQSDYVEVEFKRYGSEVERRNQEIRYDKVEALPTAM 240

Query: 250 LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIF 309
           L                +++++ + RL+  +  ++  L+++       +  ++ +   + 
Sbjct: 241 LW----------GSEEPSHQAQLNWRLSLPVLALVVTLLAVPL---SRVNPRQGRFARLV 287

Query: 310 ISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK--KKYTKI 361
            S+ I        S     + +       +++  F  ++  L MI   + ++++
Sbjct: 288 PSILIYLTYITILSNTTSNVSEGETSPLTIWIVHFVFAAFALNMILFGRFWSRV 341


>gi|302879722|ref|YP_003848286.1| permease YjgP/YjgQ family protein [Gallionella capsiferriformans
           ES-2]
 gi|302582511|gb|ADL56522.1| permease YjgP/YjgQ family protein [Gallionella capsiferriformans
           ES-2]
          Length = 377

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 120/357 (33%), Gaps = 16/357 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           + F+  ++     + ++    ++ I  + Q+++ +    S   +++ +L + G+     L
Sbjct: 18  RQFQRALVLEFAGNGVLVFAILLGIVVISQLIRFLGEAVSGKLAVDGVLALLGFSALNYL 77

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++      +     L+   R++E+++  + G      I+PV   A  +   + +   ++
Sbjct: 78  SVLLSMSLFIAILLTLSRCYRDSEMVVWFSAGIGLTRWIRPVALFAAPVVTVIALLSLVL 137

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P          A+ +     + L   +F        +   +       +   I      
Sbjct: 138 SPWAMKRADDFKAQLESRDELATLTPGVFRESGQSDRVYFVETVDVGNGRIGNIFVRSVQ 197

Query: 182 QTHKIYYAQS----GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +             ++    + ++L +G  +  +P  +D  I++F+ Y ++ ESA S  
Sbjct: 198 NSQMGTMVAREGLQQTMPNGDRFLVLLNGTRYEGTPGERDYRIVEFERYAMRIESAASKQ 257

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           ++      +   L                   SE   RL   +   +  L++I  +    
Sbjct: 258 LLPNVRTLSTLELWR----------NPTRWNLSELEWRLGLPISAAVLSLLAISLSYVNP 307

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLL 352
              +   +    +   +   +    +  + + + +P      I  L L   +  F  
Sbjct: 308 RAGRSLNLVLAMVLYMLYSNMISVTNAWVGQGKLSPGIGLWGIHALMLLITALFFYY 364


>gi|331684625|ref|ZP_08385217.1| putative permease [Escherichia coli H299]
 gi|331078240|gb|EGI49446.1| putative permease [Escherichia coli H299]
          Length = 359

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 121/360 (33%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N       + I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVDVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     +         +     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETQETSDNLPWQSAFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 357


>gi|257095656|ref|YP_003169297.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048180|gb|ACV37368.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 359

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 115/340 (33%), Gaps = 17/340 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R    +       +  I    Q+++ +N  +    + + +  + G+     LP
Sbjct: 2   IFQRAVRREFAHAASGIFTALFAIMVTTQLIRLLNEAAQGGVAPDAVAALLGFASLNYLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+   R++E+++  ++G      I+PVL  AI L   +      + 
Sbjct: 62  PLLSLSMFVAILLTLSRCYRDSEMVVWFSSGLPLTAWIRPVLVFAIPLVATIAALSFFLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   S   +   K  +      +    F        +   +    +T Q   +  S   +
Sbjct: 122 PWAVSQSAEYRGKLSIRKDAGEVSPGTFHESSAGDRVVFVEGIAEDTSQVRNVFVSETKE 181

Query: 183 THKIYYA----QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                               + I+L DG  +  +P S ++ I+++  Y ++ E+  +  I
Sbjct: 182 GRVGVTMAVTGHQEIAANGDRFIVLQDGRRYELAPASPEVRILEYVRYAVRLETKEARGI 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                   L  LL          P  L  YR+E   RL+     V+  L++I  +    +
Sbjct: 242 TPTPKSMPLRELL----------PVDLPAYRAELLWRLSIPCSAVVMALLAIPLSF---V 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
             +  +   + +++ +        +     +       P+
Sbjct: 289 NPRAGRSANMLLAILVYLIYNNLLTISQGWVASGKVSFPV 328


>gi|192291843|ref|YP_001992448.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192285592|gb|ACF01973.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 362

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 104/356 (29%), Gaps = 10/356 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            +   Y  R    + L     +  +   +  +  +        S   + + S   +P +L
Sbjct: 5   NTLGRYFARRFVIASLGVFFGLFVLLVFVDYVDLLRRAGGLAVSAFYVAQASFCRVPQLL 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PFC  +       +++R+ EL++    G S    I P L+ AI + IF     N +
Sbjct: 65  ERLLPFCILIGGMTCYLALSRSLELVVARAAGLSAWEFISPALWSAIAIGIFATTVFNPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFR----LDDDLYIKISKYNPNNTLQGIFIVD 177
               +   KQ+ A+     T    + N F+      D    I  ++      +     V 
Sbjct: 125 SAHMQERAKQMEAEMFGENTGGLQDANGFWMNQVSPDGQAIINAARSQQQGAVLTGITVF 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +         ++    L+    +L +   +       D   +           A    
Sbjct: 185 RFEPDFQFKDRIEAREAVLEPGHWLLKNVRRYTMDGAPVDQDTL---ELPTSLTLAQVRN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   +   L     ++ N        YR ++HK L +        +++   +    
Sbjct: 242 SFATPESVSFWQLPTYIKSSENSGFATAG-YRLQYHKLLAKPFLLAAMVMLAASVSL--R 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             R       +   ++  F ++          +    +         C+  +   +
Sbjct: 299 FFRFGGVQKMVLSGVAAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFL 354


>gi|328952245|ref|YP_004369579.1| permease YjgP/YjgQ family protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328452569|gb|AEB08398.1| permease YjgP/YjgQ family protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 401

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 130/360 (36%), Gaps = 6/360 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++ R     F +  L I  I ++ +I + + ++ +   SL  + K    L+P +L 
Sbjct: 16  IIYRHLWRECWDIFAVGLLAITVIVFMGRITRVMQMIITKGVSLIDIGKFCVLLLPYLLL 75

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +        ++ + E++ +  +G S + L+ P+L  A+++S           
Sbjct: 76  FTVPMAAMIAVLITFLRLSNDNEIMALKTSGVSVLQLLPPILAFALVISSTALFFSLYAT 135

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDT 181
           P     +++L ++         + E +F    + + + +++   +   ++G+F+ D RD 
Sbjct: 136 PWGNQEMRRLLSEVTKRRADLGIREQVFNNDFEHVVLFVNRVPTSGGPMEGVFLSDDRDP 195

Query: 182 QTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           Q      A    +  D    R  + L  G V R S  +     ++F++Y +  E      
Sbjct: 196 QVPITIAADKALLLFDLKSERLIMQLFQGRVLRLSEDATSFHSIEFETYQVPLELFKFVP 255

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                ++  L  L      +             E ++R +  +   I  LI++       
Sbjct: 256 KPKSEDEMFLGELRQALAQH-KPGTLDYNKLLVELNRRFSLPVGACIMILIAMPLGISTQ 314

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  +   +    +   + + +      +       P   P L  F+F   +  L    ++
Sbjct: 315 IKGRAVGLIMGLVIFLLYYLLLTAAWRLGQHAIIPPGLAPWLPDFIFLFLAWGLWRRSRR 374


>gi|228472720|ref|ZP_04057478.1| permease YjgP/YjgQ family protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275771|gb|EEK14537.1| permease YjgP/YjgQ family protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 359

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/362 (10%), Positives = 112/362 (30%), Gaps = 5/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    ++    L  + I  ++   ++   ++ +      ++K     +   
Sbjct: 1   MKIIDRYILKRYFLTYSALFLMFIPIGILVDYAEKNQKMTDNHAPTEAIIKYYANFVVHF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +   TE++ + ++G S    ++P  + A +LS+F+ +    
Sbjct: 61  ANILFPIFLFLSVIWFTSKLAEKTEIVAMLSSGISYNRFLRPYFYGATILSVFVLLMGMF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P       +          +S           ++     S     N      +     
Sbjct: 121 VVPYSSGVYNEFYGTYLSKDLYSKGSRLYNQVNKNEYIYVSSFDANTNQGANFVLERFDG 180

Query: 181 TQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +      A S     +   +   L +    +    +     +  K   L  ++ +   I
Sbjct: 181 LRMTDKITANSIEWVQNDSVKTYRLYNYTHRKVGDWNDIYEKVYQKDTLLNFKTTDLLPI 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A  +N   L              +  Y   +++R        I  +I +      ++
Sbjct: 241 EYAAETKNFFELNKFIAEERQKGSPNIRIYELVYYRRWAAIFNVFILTIIGVAV---SSV 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            ++      +   + I F   +         E++     +  +    + ++  + + +K 
Sbjct: 298 KKRGGMGVNLAFGVLIGFSYVFFERIFGIMAEKSGITPLMAVIIPNAMFALLAVYMIRKS 357

Query: 359 TK 360
            +
Sbjct: 358 RR 359


>gi|315122195|ref|YP_004062684.1| permease protein [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495597|gb|ADR52196.1| permease protein [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 283

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 186/283 (65%), Positives = 222/283 (78%), Gaps = 1/283 (0%)

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           MNRN EL IIDNTGTSRITLIKPVLF AILLSIFLFI EN +EPK R+ IK+L A+A L 
Sbjct: 1   MNRNAELFIIDNTGTSRITLIKPVLFFAILLSIFLFILENTLEPKYRTEIKRLGAQAYLN 60

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ 199
           LT S LEENLFF L+++ YIK+SK NPNNT+QGIF +DS D   H+IYYA+SG +DL+++
Sbjct: 61  LTLSSLEENLFFNLNNNFYIKVSKRNPNNTMQGIFAIDSSDPIIHRIYYAKSGFVDLEKK 120

Query: 200 AIILNDGEVHRKSPISKDISIMKFKSYTLQT-ESANSSTIVLKANDQNLSFLLNPNPNNP 258
            IIL  GEVHRKS +SKDISIMKF SY L          I LKA+DQNLSFLLNP+PNNP
Sbjct: 121 IIILQKGEVHRKSSVSKDISIMKFDSYALDMQSLLAKQDITLKAHDQNLSFLLNPDPNNP 180

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
           +YR   +  YRSE HKRLTQWLFP++FGLISI++ +K + +R  +K+HP  I+L +SF V
Sbjct: 181 SYRENFIGKYRSELHKRLTQWLFPIVFGLISILSIEKTSSLRHYRKVHPSLIALLLSFCV 240

Query: 319 FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTKI 361
           F GFSYII  IEQ+P YIPILYLF F +SSI +L+IKKKY KI
Sbjct: 241 FSGFSYIIQGIEQSPSYIPILYLFFFVLSSILVLLIKKKYVKI 283


>gi|270157966|ref|ZP_06186623.1| putativeYjgP/YjgQ family permease [Legionella longbeachae D-4968]
 gi|289163767|ref|YP_003453905.1| membrane protein [Legionella longbeachae NSW150]
 gi|269989991|gb|EEZ96245.1| putativeYjgP/YjgQ family permease [Legionella longbeachae D-4968]
 gi|288856940|emb|CBJ10754.1| putative membrane protein [Legionella longbeachae NSW150]
          Length = 356

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 111/357 (31%), Gaps = 3/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI + +  S  +  L ++ +   I  + +I+ +      +          +P  
Sbjct: 3   MKILDRYIAKTVIGSIGLVTLMLIGLQIFILFVDQISDLGRVDYGIVQATFFVMLQMPYQ 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T   L  +  ++EL+I+  +G S   +   VL  ++LL IF+ +    
Sbjct: 63  VYLFFPMASLLGTLIGLGILANHSELVIMRASGMSIGQITVAVLKASVLLIIFVTVLGET 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P            A          +  + R ++D        + N             
Sbjct: 123 LVPYLSHYANDYKTAAISGGQTLRTSKGFWLRYNNDFISVGVVLSNNVLNNIYQFRFDNQ 182

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  + +   +       I  D +                  + +  +    +   +
Sbjct: 183 HHLKMSRFIRE--VRHTPTGWIAYDVQQTEFGGDQTKAQAFASLPWDVSVKPKILTISSI 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             ++ NL  L N          + +  Y+  F +RL Q    ++  ++SI          
Sbjct: 241 DPDEMNLREL-NRYIRAQKLNHQNIHNYQFAFLQRLIQPFTTMVMMILSIPFIFGPLRST 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +  ++  SF +   F   +  + Q P  +  L   +        LM + +
Sbjct: 300 TMGSKLLVGAAVGFSFHILNRFFGPLSTVFQLPPELSALGPTVIFALLGLYLMKRVR 356


>gi|298529509|ref|ZP_07016912.1| permease YjgP/YjgQ family protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510945|gb|EFI34848.1| permease YjgP/YjgQ family protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 355

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/358 (11%), Positives = 117/358 (32%), Gaps = 7/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+LR       +       +  ++  + R+N +  +      +L+   + +P +
Sbjct: 1   MSVLNRYLLRQNLFYTAVLLFSGTMVYLIVDFVGRMNAMVEAGLGALQVLEYFVFKMPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P  F +     +  M+R+ EL+ ++++  S        +  A+++ + LF+    
Sbjct: 61  VAQTLPAIFMLGVLIQMAMMHRSNELVAMESSAISFRKPAVFFIGYALVVFMLLFVFSET 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +  +     +Q+  +       +       +  D D  I I + + N      F    + 
Sbjct: 121 LGVRGEQVTRQIWNQDVRDREAAVEGLEDVWVKDRDYMIHIERAHINEGRGKDFTAYKKS 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                    ++   ++ +  ++L D  V +   + +           +   S       L
Sbjct: 181 DPGKIQEIIKAPEFEVHKNRLLLRDVTVFKPHSLERQSLQEMEMEVKIDLRSFALVDSDL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                ++  L +   N        +E   +  H ++      V+  L+++         R
Sbjct: 241 PYQAWSIFTL-SALVNQLKESGASVEKISTALHSKIAYPFALVVMTLLALAL-----FTR 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +     + + L I F  ++          +     P +  +   +    L +++  +
Sbjct: 295 IKNIYALVTLGLVIVFF-YYTVYVFGVSYAEEGVTAPFVGAWTANVFFGILSLLQLFW 351


>gi|86138692|ref|ZP_01057265.1| permease, YjgP/YjgQ family protein [Roseobacter sp. MED193]
 gi|85824752|gb|EAQ44954.1| permease, YjgP/YjgQ family protein [Roseobacter sp. MED193]
          Length = 367

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/362 (12%), Positives = 117/362 (32%), Gaps = 13/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LY  R   + F + C  ++ +  +I + ++I        S + ++ ++    P  
Sbjct: 1   MK-LDLYYARRFLQWFAVICGVLMTLVMLIDLNEQIRRFDEFDVSASEIVGLTLLNAPAA 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPV--------LFLAILLSI 112
           L    P    + T  +   + R++EL++    G S I  +           +     L+ 
Sbjct: 60  LSEFLPLIMILTTIVLFVGLARSSELVVTRAIGRSGIRALAAPVLVAGLLGILAVSTLNP 119

Query: 113 FLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG 172
            +  + N+ +    +      +    +    +L +                 + N  L  
Sbjct: 120 IVAATTNLSKTLADTYRTGGPSALSFSGEGLWLRQGSPSGQSVIHASSYGGGSDNIVLYD 179

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           + I+                +     + ++      H  + ++ + S    ++  L T  
Sbjct: 180 VTILAYAPQGGPIRQIIAESARLDGEEWLLHKAKAWHMTAGLNPERSAATHETLRLPTTL 239

Query: 233 ANSSTIVLKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                     +   +S + L     +        + Y+  +   L + LF +   L+   
Sbjct: 240 TQDRIRDRLGSADGISVYDLPTTIRDLAQAGFSTKRYQVWYQVELARPLFLIAMVLVGAA 299

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                   R       +  ++ + FG+++  ++    + +N      L  +   ++SI L
Sbjct: 300 F--TMRHTRFGGTGLAVLTAVLLGFGLYFVRNFAQ-ILGENGQIPVALAAWAPPVASILL 356

Query: 352 LM 353
            M
Sbjct: 357 TM 358


>gi|319762859|ref|YP_004126796.1| permease yjgp/yjgq family protein [Alicycliphilus denitrificans BC]
 gi|317117420|gb|ADU99908.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans BC]
          Length = 366

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/367 (13%), Positives = 122/367 (33%), Gaps = 12/367 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+    I R +        L  + + +   ++  +  V S+   ++  L      +P  
Sbjct: 1   MKTIRRLIYREVIVGVAFVTLAFLALFFFFDLVDELRWVGSNGYRMSHALLFVALSLPQH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    + T  V+  + +++E  I+  +G      +  +L L        F   + 
Sbjct: 61  LYELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALSTLLTLGCAFVALTFAVGDY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEEN-LFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P        + A+    ++           + D    + +    P+  ++ + + +  
Sbjct: 121 LAPISERAAALVRAQQLGQISTGATGAWLKERQGDHSFAVNVRALTPDGHMRDVRVFEFD 180

Query: 180 DTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKS-PISKDISIMKFKSYTL----QTESA 233
                     A   + D    A  L   +        + DI + + +  TL    +    
Sbjct: 181 ARGRVASTTVAAQATFDDSGDAWNLEQVKRSVFEQRPNGDIRVTRRQEPTLLLHTRISPD 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +  +LK +      L +    +     +  + Y  EF +++   L  ++  ++S+  A
Sbjct: 241 MVAASLLKPDKMATIGLFH-YIRHLEANGQSAQRYEIEFWRKVFYPLSCLVMVVLSLPFA 299

Query: 294 DKRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYY---IPILYLFLFCISSI 349
                           +   ISF +    F +  +    +P+     P L   L  +++ 
Sbjct: 300 YLHFRSGGIAGYVFGGVMAGISFFLLNNVFGFAGNLQNWSPWLTAAAPGLIYSLLSLAAF 359

Query: 350 FLLMIKK 356
             L++++
Sbjct: 360 GWLVLRR 366


>gi|326565140|gb|EGE15331.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis 103P14B1]
 gi|326572841|gb|EGE22826.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis CO72]
 gi|326573713|gb|EGE23671.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis O35E]
          Length = 437

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 129/368 (35%), Gaps = 21/368 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   +  +  +   F+V I    ++++   + +    ++ +L ++ GY  P  L 
Sbjct: 57  ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYNFPYFLE 116

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  + + ++ L ++L         + +
Sbjct: 117 LILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVAK 176

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-----------YNPNNTLQ 171
           P        +  +  +A  F  +    F    D                       +T +
Sbjct: 177 PWGMERATNIWQEQSVAQVFDLIRPQEFISSGDYHLYVGEMGANREFLKDVIIIQMHTAE 236

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAII---LNDGEVHRKSPISKDISIMKFKSYTL 228
              I   +  Q   I +A+S +        I   L  G  +   P S+  S + F+ Y +
Sbjct: 237 PSDIQSRQSHQRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGFERYRM 296

Query: 229 QTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
                    T  ++    + + LL+      + + +  +   +E   RL+     ++   
Sbjct: 297 TLSVKPPEGTSHIRIEGVSTTELLS--IIQGHSKRDNPQEAYAELGYRLSMPWLILLAI- 353

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
             ++A     +  ++ + + +  ++ I          +   I +     P++YL    + 
Sbjct: 354 --LLATPLSYVRPRQGRWYKLVPAILIYVAGVLVVISLKDTIAK-GKLSPVIYLAALLMM 410

Query: 348 SIFLLMIK 355
            +  + + 
Sbjct: 411 MVVAMYLN 418


>gi|254481219|ref|ZP_05094464.1| putative permease, YjgP/YjgQ family [marine gamma proteobacterium
           HTCC2148]
 gi|214038382|gb|EEB79044.1| putative permease, YjgP/YjgQ family [marine gamma proteobacterium
           HTCC2148]
          Length = 369

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/365 (13%), Positives = 116/365 (31%), Gaps = 24/365 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+   +    +     ++ I    + ++ +   +    +  IL+ +  Y +P  
Sbjct: 1   MKIL-RYLALDVLVHMVAVSFVLLVIIISGRFVKYLAEAAVGDLAAGILVPVLLYRLPGF 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +        +   +E++I   TG S   L    L  A+L+ + +      
Sbjct: 60  MELIIPLGLFIGILMSYGRLYVESEMVIFTATGISPQRLAGYTLVPALLVMVIVGGLSLF 119

Query: 121 IEPKCRSTIKQ-LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           I P   +  +  L A        +        R  +D+       + N  +  +F+  + 
Sbjct: 120 ISPLGAARSEALLHAPESSQGINALAAGRFQTRRSNDMVSYAQAVDANGVMHSVFLSQAE 179

Query: 180 DTQ----THKIYYAQSGSIDLDR----QAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
                  T  +  A  G +  D     + + L +G  +   P   D  ++ F+ +     
Sbjct: 180 REDDGELTMLLTIASEGEVKFDSATGARYLELRNGVRYVGYPGDLDYQVVSFEQFGELIP 239

Query: 232 SANSSTIVLKAND-QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                       D +  + LL+            L   ++  H RL+  +   I  +I++
Sbjct: 240 EPEGGVRTADPVDGRTTAHLLS----------SELLEDKAALHWRLSIPVMVPIVAIIAM 289

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                     +R +   +  +  +  G     +     I         ++       ++ 
Sbjct: 290 C---MSHTNHRRGRYIKMAPAFILYLGYLTLLANARSGIASGEGGTVNIWAVHALFLAVA 346

Query: 351 LLMIK 355
           L M+ 
Sbjct: 347 LAMLY 351


>gi|296104923|ref|YP_003615069.1| lipopolysaccharide export system permease protein LptG
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059382|gb|ADF64120.1| lipopolysaccharide export system permease protein LptG
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 360

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 110/337 (32%), Gaps = 2/337 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRLQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +   +          +          + + + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGQNFVYIERVKGDDELGGVSIYAFNDERRL 186

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + +A S   D + +   L+  +     +P     S     ++           + L  
Sbjct: 187 QSVRHASSAKFDPEHKQWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDP 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L N          +    Y+     ++ Q +   +  L+++            
Sbjct: 247 DALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPMSVAVMMLMALSFIFGPLRSVPM 305

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
                  IS    F V       +  +   P  I  L
Sbjct: 306 GVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL 342


>gi|261416540|ref|YP_003250223.1| permease YjgP/YjgQ family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372996|gb|ACX75741.1| permease YjgP/YjgQ family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327353|gb|ADL26554.1| putative membrane protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 366

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 114/369 (30%), Gaps = 19/369 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F  Y++    + FL+     V I  VI  +  I    S    +  +       +P +L 
Sbjct: 2   KFSRYLIWNFLKMFLIVVCGAVLIFVVIDFVGNIKTWLSR--DMKAVTDYYLSYLPYILY 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++TP    +     + +M R+ E+  + ++G S    + P+ FL +L+SI  +       
Sbjct: 60  LITPVALFIAVLASVGNMARHLEMSAMQSSGQSPFKTLLPIFFLGVLMSIGSYEMSEHWL 119

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENL---FFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P       ++            ++E     F   + + +        N   + + ++   
Sbjct: 120 PDANHKRFEIMETNAQKRKNPRIKEKQDFTFIDSEKNSWFFKHYSGKNKLGRDVVLLVRE 179

Query: 180 DTQTHKIYYAQSGSIDLDRQ-----AIILNDGEVHRKSPISK---DISIMKFKSYTLQTE 231
             +  + Y  +S                  +G                  K     + T 
Sbjct: 180 RGRLVERYDVRSIRWIEKDSVTKDGFWRFENGFHRVFKKDGSVDVFPVRQKSMKGKVNTH 239

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
             +        ++ + S ++    +      E      +    + +     +I  LI   
Sbjct: 240 PNDLINERQLPDEMD-SKMVKARIDVLRRSGEDTRAMETALQFKYSAHWMNLIVLLIG-- 296

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSI 349
           AA      R         + L + F  ++    I  K+ +N    P    +   F  + +
Sbjct: 297 AALCHRYSRSGGLSQKFGVGLLLVFS-YYILERIGLKMGENGALSPFWAAWNSHFIYAGL 355

Query: 350 FLLMIKKKY 358
             +M+ + +
Sbjct: 356 AFVMLYRSF 364


>gi|126739400|ref|ZP_01755093.1| permease, YjgP/YjgQ family protein [Roseobacter sp. SK209-2-6]
 gi|126719500|gb|EBA16209.1| permease, YjgP/YjgQ family protein [Roseobacter sp. SK209-2-6]
          Length = 367

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 118/360 (32%), Gaps = 17/360 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LY  R   + FL+    ++ +  +I + ++I    +   S   +L ++    P  
Sbjct: 1   MK-LDLYYARRFAQWFLVITGVLMTLVVLIDLSEQIRRFDAFDLSAGQILGLTLLNAPAA 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + T  +   + R++EL++    G S I  +   + +A L+ +    + N 
Sbjct: 60  MNEFLPLIMILTTIVLFVGLARSSELVVTRAIGRSGIRALAAPVLVAALIGVLAVSTLNP 119

Query: 121 IEPKCRSTIKQLSAKAQLALTF---------SYLEENLFFRLDDDLYIKISKYNPNNTLQ 171
           I     +  K LS   +                 + +   +                   
Sbjct: 120 IVAATTNRYKSLSDSYRTGGPSVLSLTGEGLWLRQGSPSGQSVVHAAGYGGGREEIILYD 179

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP-ISKDISIMKFKSYTLQT 230
              +   +D+       A+S  +  +    +L D +V   S   + +IS  + +   + T
Sbjct: 180 VTILTYGKDSGPRTRTQARSARL--EGSDWVLQDAKVWPLSAWTNPEISAGEHQELRIPT 237

Query: 231 ESANSSTIVL-KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                       A+D    + L              + +   +   L +  F +   L+ 
Sbjct: 238 TLTQDRIRDRLDASDGISIYDLPQTIRELAEAGFATKKHEVWYQVELARPFFLIAMVLVG 297

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                     R       +  ++ + FG+++  ++    + +N      L  +   ++SI
Sbjct: 298 AAF--TMRHTRFGGTGMAVLTAVLLGFGLYFIRNFAQ-ILGENGEIPVALAAWAPPVASI 354


>gi|33151747|ref|NP_873100.1| hypothetical protein HD0553 [Haemophilus ducreyi 35000HP]
 gi|33147968|gb|AAP95489.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 367

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 121/357 (33%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I +S L     ++ + +  Q++  +N   S     +++L + G  +P +  
Sbjct: 2   ILSRYLTKEILKSQLAILFILLLMFFSQQLISVLNSAVSGKIPTDLVLSLLGLGMPALSQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +     L     ++E+ ++   G  +  L K  LFL++  +     +   + 
Sbjct: 62  FMLPLSLFIALLLTLGRFYADSEITVMRACGIGQGLLTKVALFLSLFTTALAVYNVFWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI--KISKYNPNNTLQGIFIVDSRD 180
           P   +   Q+ A+A+    FS L    F  +   +     I+K         +F  D + 
Sbjct: 122 PWSINKQSQILAEAKSNPRFSALSVGQFMEVGGYVLFIENINKQENKLNDVYVFQPDQQK 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G   ++    Q + L +   +  S    D  I  F  Y       +  T
Sbjct: 182 KNRPSVVTAELGGLQALPNGDQILTLANSTRYEGSANVADFRISHFDRYQAYLGYQDIQT 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +    N + L+N          +     ++E   R        +  L+++       
Sbjct: 242 NDKRVQRANFTSLIN----------DTSNEAKAELQWRFVLIFAVPLMALLAV---PMSQ 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLM 353
           +  ++ +   +  ++ +    F   S +    E +       +         + ++M
Sbjct: 289 VNPRQGRFAKVIPAVLLYLIYFLLQSSLRSSGENDKLNATLFMPAVSIGFLMLAIIM 345


>gi|330824939|ref|YP_004388242.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans
           K601]
 gi|329310311|gb|AEB84726.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans
           K601]
          Length = 366

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/367 (13%), Positives = 122/367 (33%), Gaps = 12/367 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+    I R +        L  + + +   ++  +  V S+   ++  L      +P  
Sbjct: 1   MKTIRRLIYREVIVGVAFVTLAFLALFFFFDLVDELRWVGSNGYRMSHALLFVALSLPQH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    + T  V+  + +++E  I+  +G      +  +L L        F   + 
Sbjct: 61  LYELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALSTLLALGCAFVALTFAVGDY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEEN-LFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P        + A+    ++           + D    + +    P+  ++ + + +  
Sbjct: 121 LAPISERAAALVRAQQLGQISTGATGAWLKERQGDHSFAVNVRALTPDGHMRDVRVFEFD 180

Query: 180 DTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKS-PISKDISIMKFKSYTL----QTESA 233
                     A   + D    A  L   +        + DI + + +  TL    +    
Sbjct: 181 ARGRVASTTVAAQATFDDSGDAWNLEQVKRSVFEQRPNGDIRVTRRQEPTLLLHTRISPD 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +  +LK +      L +    +     +  + Y  EF +++   L  ++  ++S+  A
Sbjct: 241 MVAASLLKPDKMATIGLFH-YIRHLEANGQSAQRYEIEFWRKVFYPLSCLVMVVLSLPFA 299

Query: 294 DKRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYY---IPILYLFLFCISSI 349
                           +   ISF +    F +  +    +P+     P L   L  +++ 
Sbjct: 300 YLHFRSGGIAGYVFGGVMAGISFFLLNNVFGFAGNLQNWSPWLTAAAPGLIYSLLSLAAF 359

Query: 350 FLLMIKK 356
             L++++
Sbjct: 360 GWLVLRR 366


>gi|329114151|ref|ZP_08242913.1| Lipopolysaccharide export system permease protein LptG [Acetobacter
           pomorum DM001]
 gi|326696227|gb|EGE47906.1| Lipopolysaccharide export system permease protein LptG [Acetobacter
           pomorum DM001]
          Length = 370

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/358 (11%), Positives = 100/358 (27%), Gaps = 13/358 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   YI R    S +     +  I  +   +  +  V++    S N++ +I+   +P   
Sbjct: 6   TLSRYIARQFVFSVVAMIASLTGIVCLFDFIDLLRRVATKPDVSTNVVTEIAALHVPYFA 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +        + R++EL++    G S    +   +  A+L+        + +
Sbjct: 66  TEILPFGMLLGGIVCFWRLTRSSELIVARAAGISAWQFLTAPVACAMLIGALFTTLISPV 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--R 179
                   ++L  +            +    L                 +G+ + D   R
Sbjct: 126 SSSMYRRAEELDQQYLRTGGGPLSLSSGSLWLRQSDSQYDPHGVAMLHARGVQLKDGLLR 185

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI------SKDISIMKFKSYTLQTESA 233
                         + +  +A     G +            +  +  +            
Sbjct: 186 IRNVSVFRLDHQDKLMMRIEAPEGYLGTLKWILSDASVVRPNDLLHHVGQIDLPTDLTVN 245

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                       ++  L     +  +        +R  F   L   +      L++  A 
Sbjct: 246 RVQESFSSPETLSVWAL-PGFISLLDRSGFSSIRHRIHFQSLLALPMLAGTMALVA--AG 302

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                 R+      I   ++  F +F   S +  +   +    P+L  +   ++ + L
Sbjct: 303 FSMRPSRRGGVARMIGSGVAAGFLLFTV-SKVAEQFGNSGALPPMLAAWAPTLAGLCL 359


>gi|46580072|ref|YP_010880.1| permease [Desulfovibrio vulgaris str. Hildenborough]
 gi|120602470|ref|YP_966870.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris DP4]
 gi|46449488|gb|AAS96139.1| permease, putative [Desulfovibrio vulgaris str. Hildenborough]
 gi|120562699|gb|ABM28443.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris DP4]
 gi|311233929|gb|ADP86783.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris RCH1]
          Length = 380

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 111/359 (30%), Gaps = 9/359 (2%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           + + +   FL+    ++ +  + + LQ   L       L     +  YL+P  + +V P 
Sbjct: 1   MFKELVSIFLLCLGALLSLILIGRGLQLRELFLGLDLGLTDATLLFLYLVPFFMLLVVPV 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +        M+ + EL+ +   G S   ++   L   +L +                
Sbjct: 61  ACMLSVFLTFLRMSTDRELVALKAGGVSIYQMMAAPLVFCVLCAGLSLSISLHWLSWGMG 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR-DTQTHKI 186
             +    +         ++  +F +    L +   + +P        IV+ R    +   
Sbjct: 121 NFRATIMEIANTRARIVIQPGVFNQDIPGLTLFARQVDPATGNLRQVIVEDRSRPGSTLT 180

Query: 187 YYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTIVL 240
             A  G+   D         L DG +++    +  +      S  L  +          +
Sbjct: 181 IVAPEGTTATDEVRGEILFHLRDGRIYKADGENVSVLGFSEYSVRLDLDKLFKGLELGEI 240

Query: 241 KANDQNLSFL--LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           K  + +   L  L+ N          +     E HKR       ++ G+ ++  A     
Sbjct: 241 KPKEMSWRQLAGLDLNRYEAEMGERYVRKVLVEVHKRWALPAACIVLGIFALPLACAFEG 300

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +R++  +    +   + + +              P         LF ++ ++ L +  +
Sbjct: 301 LRRQLGVALALVMFLVYYSMLSLGLSTGEAGTVPPVVGLWAPNVLFLVAGLYGLRLTAR 359


>gi|323697853|ref|ZP_08109765.1| permease YjgP/YjgQ family protein [Desulfovibrio sp. ND132]
 gi|323457785|gb|EGB13650.1| permease YjgP/YjgQ family protein [Desulfovibrio desulfuricans
           ND132]
          Length = 375

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 105/356 (29%), Gaps = 8/356 (2%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y++R       +       +  +  I  R++    +      +L      IP ++  
Sbjct: 5   LSRYLIRQNLYLMAICLAVGTSLYLLSDIFDRLDDFIRAGLGAQTILFYFIVKIPLIVSQ 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F +     L  + R+ E+L +   G S    I+  +  A++ S    +    +  
Sbjct: 65  LMPAVFLLAMVVQLGVLARSREMLALRAGGVSFAWFIRFFVIYALIWSCGQLVFSQFLGV 124

Query: 124 KC-RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
              +   +      +          NL+FR    +          +    I I +     
Sbjct: 125 FGEQEANRIWKEDVRKKQLDELTIHNLWFRDGPFIVQAKEAQPSKSRASDITIYEFTTDN 184

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
              I    +    +D     L D                +F S     ++  +  +    
Sbjct: 185 QELIRILNAKKALIDDHGWGLLDVHELDTRTFITVDRPSQFLSVRQNLKAYAAVELKGDT 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
               L  L +            +E   + +H +L+     V+  L+++V           
Sbjct: 245 AQLPLIEL-SRAIARLQESGSNVEMLLTIWHGKLSYAFSMVVMALLALVLVTFSE----- 298

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                I ++L + F + +G   +     +     PIL  +L       L  ++  +
Sbjct: 299 NVYANIGLALILIF-IQYGMHVVGATAGEKGVLPPILAAWLGNGIMAALASLRLAW 353


>gi|291284362|ref|YP_003501180.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|290764235|gb|ADD58196.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|320656363|gb|EFX24270.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320661734|gb|EFX29142.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320666885|gb|EFX33861.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 359

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 125/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +  +   ++     S +   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMDLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYWYDR 357


>gi|227327171|ref|ZP_03831195.1| putative permease [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 371

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 130/354 (36%), Gaps = 15/354 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N+++ + G  +P ++ 
Sbjct: 2   IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVISLLGLGVPEMVQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G  +  L+K  L LA+  +I   I+   + 
Sbjct: 62  LILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALVLAVFTAIVATINVMWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +++ A+A+     + L E  F        +        +  + +F+   R + 
Sbjct: 122 PWSSRHQEEVLAEAKANPGMATLVEGQFQSAQGGNAVLFVGNVKGSEFEHVFLAQLRPSG 181

Query: 183 T--HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G I  +    Q + L++G  +  + + +D  I  F +Y       + + 
Sbjct: 182 NARPSVVVADRGHIKQNEDGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQSVTL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   ++  L + + ++           R+EFH RLT  +  +I  ++ +  +    
Sbjct: 242 NNSDVQQMDMQTLWHSDAHDA----------RAEFHWRLTLIISVLIMAMMVVPLSVVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              +   + P  +   I F +         K + +P     L    +   ++ L
Sbjct: 292 RQGRVLSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWVWLTNLTYFGIAVML 345


>gi|212636934|ref|YP_002313459.1| permease YjgP/YjgQ [Shewanella piezotolerans WP3]
 gi|212558418|gb|ACJ30872.1| Permease YjgP/YjgQ [Shewanella piezotolerans WP3]
          Length = 352

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 116/357 (32%), Gaps = 5/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  +LYI + +  S  +S L +  ++ +I+ + ++ LV   T S+        +LIP  
Sbjct: 1   MRILDLYIAKVLISSSSLSLLILTGLSGIIKWVDQLRLVGRGTYSMMDAGIYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++ ++G SR+ +    +  AI L I + +    
Sbjct: 61  IEMFFPMAVLLGALTGMGMLASNSELVVMQSSGLSRLQIALSAMKTAIPLMILVMLLSEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      K++        +       ++ +  D         + NN            
Sbjct: 121 VAPVAEVRAKEIQRTQISGGSLIESTRGVWAKDGDLFVNIGGVVDSNNLRDITLYEFDDT 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           T      +A++       +   L D            ++ +    +         S + +
Sbjct: 181 TNLTSTVHAETAKYM--GKFWQLYDVRRTSLKSEQVVLTNLDEDKWISSLTPEKLSVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++  LL+   +      +    Y     ++L Q +   +  L+++         R
Sbjct: 239 KPESLSIEGLLD-YLDYLKNNKQASARYELALWRKLMQPVTIAVMMLVALSFVFGPL--R 295

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  + + +   F  +                  I       I S   L   +K
Sbjct: 296 TVTMGARVLLGVVAGFSFYICSEVFGPLSIVYGLPAFISAGMPALIFSAGALYYIRK 352


>gi|316933707|ref|YP_004108689.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
 gi|315601421|gb|ADU43956.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
          Length = 361

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 99/356 (27%), Gaps = 10/356 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            +   Y  R    + L     +  +   +  +  +        S   + + S   +P +L
Sbjct: 4   NTLGRYFARRFVVASLGVFFGLFVLLVFVDYVDLLRRAGGLAVSAFYVAQASFCRVPQLL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PFC  +       +++R+ EL++    G S    I P L+ AI + I      N +
Sbjct: 64  ERLLPFCILIGGMTCYLALSRSLELVVARAAGLSAWEFISPALWSAIAIGIVATTIFNPL 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFR----LDDDLYIKISKYNPNNTLQGIFIVD 177
               +   KQ+ A+     T    + N F+      D    I  ++      +     + 
Sbjct: 124 SAHMQERAKQMEAEMFGENTGGLQDANGFWMNQVNPDGQAIINAARSQQQGAVLTGITIF 183

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D         ++    L+    +L     +         +             A    
Sbjct: 184 RFDPNFQFRDRIEAREAVLEPGHWLLKSVRRYTLDSA---PTDQDTMELPTSLTLAQVRN 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   +   L      +          YR ++HK L +        +++   +    
Sbjct: 241 SFATPESVSFWQL-PAYIKSSENSGFATAGYRLQYHKLLAKPFLLAAMVMLAASVSL--R 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             R       +   ++  F ++          +    +         C+  +   +
Sbjct: 298 FFRFGGVQKMVLSGVAAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFL 353


>gi|307139669|ref|ZP_07499025.1| hypothetical protein EcolH7_16278 [Escherichia coli H736]
          Length = 359

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 124/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I + G S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFVALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +  +   ++     S +   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMDLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYWYDR 357


>gi|86147549|ref|ZP_01065859.1| hypothetical protein MED222_22708 [Vibrio sp. MED222]
 gi|85834588|gb|EAQ52736.1| hypothetical protein MED222_22708 [Vibrio sp. MED222]
          Length = 323

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/325 (14%), Positives = 113/325 (34%), Gaps = 4/325 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +  +  V ++ +I+ ++++  V   T  L   L      IP  +
Sbjct: 3   KILDLYIGRTIIATTSLVLVTFVGLSGIIKYVEQLRKVGRGTYDLLQALYFVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  AI L + + +     
Sbjct: 63  EMFFPMAALLGALIGLGMLAASSELVVMQAAGFSKLDIGLSVLKTAIPLMVIVTLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +      +A       ++  +  D + +I I K + +            + 
Sbjct: 123 APQAQ-KMARDLRTISVAGGSIISTQSGVWARDANDFIFIVKIDDDKLYGLNMWRYDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                 Y++      D    + +      ++ I      +   S+         + + +K
Sbjct: 182 ALKTAIYSKEVDYVGDNVWTMRDVEVTSFENEIQVTKESLPTFSWETSLAPDKLAIVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             + +LS L +   +      +    Y     +++TQ +   +  L+++         R 
Sbjct: 242 PEELSLSGLYD-YVSYLKASEQDAARYELALWRKITQPISIAVMMLMALSFIFGPL--RS 298

Query: 302 RKKIHPIFISLSISFGVFWGFSYII 326
                 I   +   F  +    +  
Sbjct: 299 VTMGARILSGVIAGFTFYISSEFFG 323


>gi|126667524|ref|ZP_01738494.1| predicted Permease [Marinobacter sp. ELB17]
 gi|126627950|gb|EAZ98577.1| predicted Permease [Marinobacter sp. ELB17]
          Length = 353

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 115/356 (32%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+++ +G +  +  + ++ +  +   +  ++  +++ ++L   L      +P  
Sbjct: 1   MHKIDRYVMKTVGGAMFLVMVVVLSLDLIFAFIAELDGTANNYQTL-DALWYVFLTLPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    M     L SM  ++EL +I   G S   ++   +  A+ + +        
Sbjct: 60  IYDYLPLGAFMGCLVGLGSMASSSELTVIRAAGVSIKRIVWSAMKPALFVVLLGVGIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   A A  A +       L+ R  +      +               +  
Sbjct: 120 LAPPAERIAQSEKAVALGAGSNVAAASGLWHREGNVFIHMNAVQPSGVLFGISMFRFNEQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q     +A+      D    IL + +    +             +      +  S +++
Sbjct: 180 RQLLAASFAERAIYQGD--HWILENVQTTELAEQGTTRVTHNQLRWESGLSPSVLSVLIV 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K  +  ++ LL       + +      Y   F K+    L   +  L++I          
Sbjct: 238 KPENLAMTGLL-TYARYLDEQGLSASRYWLAFWKKTLMPLGTAVMVLVAISFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                    + + +SF         +  +      + +L + +   + I +L++++
Sbjct: 297 TMGFRVFTGLLVGLSFKYMQDLLGPMSVVYGFEPILAVL-VPIAVNAGIGILLMRR 351


>gi|77457218|ref|YP_346723.1| permease YjgP/YjgQ [Pseudomonas fluorescens Pf0-1]
 gi|77381221|gb|ABA72734.1| putative ABC transport system, membrane protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 353

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 114/357 (31%), Gaps = 6/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + +     I+ +A +   +  +  V S T +L  +L       P  
Sbjct: 1   MVKLDRYIGSSVFIAIIAVLAIILGLATLFAFIDEMGDV-SDTYTLVDVLSFVLLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  ++EL ++   G S   ++  V+   ++L +   +    
Sbjct: 60  LYDMLPMAALIGCLIGLGSLASSSELTVMRAAGVSIGRIVWAVMKPMLVLMLAGVLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S  +   + AQ +      +  ++ R  D+     S                ++
Sbjct: 120 VAPATESMAQANRSLAQGSGDAQSAKHGMWHRQGDEFIHINSVQPNGRLYGVTRYHFDKE 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+    D D     L D    +    S ++     + + +       ST+V+
Sbjct: 180 RHLLSSSFAKRAEFDTD--HWQLTDVTTTKFHERSTEVVNTPVERWDVSLSPQLLSTVVM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +++ L     +    +      Y   F  ++ Q L      L++I         R
Sbjct: 238 APESLSITGL-WGYIHYLADQGLSNGRYWLAFWVKVLQPLVTAALVLMAISFIFGPL--R 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +F  + + F        +        +      L    + ++  + + ++
Sbjct: 295 SVTLGQRVFTGVLVGFTFRIVQDLLGPSSLVFGFSPLFAVLVPAGVCALAGVWLLRR 351


>gi|255020899|ref|ZP_05292955.1| Predicted permease [Acidithiobacillus caldus ATCC 51756]
 gi|254969690|gb|EET27196.1| Predicted permease [Acidithiobacillus caldus ATCC 51756]
          Length = 372

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 62/364 (17%), Positives = 132/364 (36%), Gaps = 8/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      ILR + R F+  CL ++ I  + Q+ Q ++ V+S    L + L++ G   PT+
Sbjct: 1   MSRIHARILRDLLRVFVFGCLLVLGILAIGQLSQLLSQVASGQLPLGVTLQLLGLATPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P  F      V +++ R+ E++ I + G S + L++ +    +++++   +    
Sbjct: 61  LVTVLPLAFFFALYLVFSNLYRSNEMMAIRSAGLSLLDLLRALALPILVIALLEALLSLS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P  +  ++  S +   A   + ++   F R+     + + +  P +  +   I     
Sbjct: 121 WSPAAQRQLQAESLRLANAAAEALIQPGSFARIAGGHILYVGQSAPGSEHRYREIFVDLG 180

Query: 181 TQTHKIY-YAQSGSIDLDRQAII---LNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +       A  G I  D+   I   L  G  +   P +    I+ F  Y +   +   S
Sbjct: 181 GKGEPDIATAAFGEIRKDQDGGIALVLIQGHRYLGQPGTAGFKILSFVHYRIALAAPQGS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +        + + L  P        P       +E   RL   L   +  L++I  A   
Sbjct: 241 SDQG----IHWAALDLPQVLQALREPRYARHALAELEWRLIWPLLIPVLALLAIPLAFGG 296

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                R     + I   ++      F        +   +  + ++ L   +       ++
Sbjct: 297 PRGAGRASGALLGILTLLAANNLLVFLKEGIIQGRIGGFPGLFWVLLLLGALAAYAFWRR 356

Query: 357 KYTK 360
           +  +
Sbjct: 357 QGDR 360


>gi|310766280|gb|ADP11230.1| Inner membrane protein [Erwinia sp. Ejp617]
          Length = 358

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 117/355 (32%), Gaps = 2/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + + +   +V ++ +I+ + ++        ++      +   +P  + +
Sbjct: 5   LDRYIGKTIFNTIMATLFMLVSLSGIIKFVDQLRKTGQGEYTVLGAGLYTLLSVPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++ + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGALAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIGEFVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+  +  +    +  L+ +  D+        + N            + + 
Sbjct: 125 QGEQMARNYRAQQLMGGSLLSTQSGLWAKDGDNFIFIERIRDDNQLSGISIYNFDHERRL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   + D++   L   +    S   +   S      +           + L  
Sbjct: 185 KTVRYAASAKYNADKKLWELAQVDQSDLSDAQQIKGSQTLSGEWNTTLTPDKLGVVALDP 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              ++S L +          ++   Y+     ++ Q L   +  L+++            
Sbjct: 245 GALSISGLYS-YSKYLKQSGQMAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVSM 303

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  +  L       +    +++K++
Sbjct: 304 GMRVVTGISFGFLFYVLDQIFGPLSLVYNIPPILGALLPSAAFFAISLAMLVKRR 358


>gi|237807324|ref|YP_002891764.1| permease YjgP/YjgQ family protein [Tolumonas auensis DSM 9187]
 gi|237499585|gb|ACQ92178.1| permease YjgP/YjgQ family protein [Tolumonas auensis DSM 9187]
          Length = 356

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/355 (10%), Positives = 113/355 (31%), Gaps = 3/355 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+ R +  + LM  + +V ++ +I+ + ++  V   + +    +    Y IP    
Sbjct: 4   ILDRYVGRTVIMAILMCTVMLVGLSSLIKFVDQLQNVGEGSFTTFHAILRVLYAIPGDTV 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +     L  +  ++EL+++   G SR  ++   L   I +   + +    + 
Sbjct: 64  LFFPMAALLGGVIGLGQLASSSELVVLQAAGLSRAKIVISALKTVIPVMFLIMLLGEYVA 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A      +     ++ +   D    I     + +L+G+ +       
Sbjct: 124 PIAEQKAHDIKTSAISGGKITASTYGIWVKEGHDFIS-IDTLFRDGSLRGVTLYRFNLNG 182

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             +     + ++   +   + +      +         +    +           + +  
Sbjct: 183 ELQEVIRSAMAVYQQQAWHLKDIVITQLQDKQQIKFKNLTDWVWKTNLTPDKLGVVSVSP 242

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           ++ +   L N   +      + ++ Y  EF ++L   +  +   L++             
Sbjct: 243 DELSAQGLYN-YISYMKSNGQQVDDYELEFWRKLLAPVSVIAMLLLAASTIFGPLRSVSM 301

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  + +  +F V          +   P  I    +       + + M++++
Sbjct: 302 GARLISGVMMGFAFFVANQVLGPFSLVYNVPPVIGA-SVPSLIFMGVAIYMLQRR 355


>gi|281180020|dbj|BAI56350.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|330909040|gb|EGH37554.1| permease Ygh-P2, YjgP/YjgQ family [Escherichia coli AA86]
          Length = 359

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 123/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 GASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 357


>gi|121591646|ref|ZP_01678888.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121546494|gb|EAX56709.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
          Length = 338

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 115/339 (33%), Gaps = 2/339 (0%)

Query: 18  MSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVL 77
           M  +  V ++ +I+ ++++  V   +  L   L      IP  + M  P    +     L
Sbjct: 1   MVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDVEMFFPMAALLGALIGL 60

Query: 78  TSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQ 137
            ++  ++EL+++   G S++ +   VL  AI L I + +      P+ +  + +      
Sbjct: 61  GALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWGAPQAQ-KMARDMRAFA 119

Query: 138 LALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLD 197
            +           +  D + +I I+K    +           + +   + +++      +
Sbjct: 120 TSGGAIMSVRTGVWARDANDFIFIAKVENEHLYGLNLWRFDENKKLSTVIFSEQVDYVAN 179

Query: 198 RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
            + ++ +       + I      +    +         + + +K  + +L+ L +   + 
Sbjct: 180 NEWLMKDAVLTRLVNDIEISKESLPEYRWRTSLAPDKLAVVTVKPEELSLTGL-SDYVHY 238

Query: 258 PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG 317
                +    Y     +++TQ +   +  L+++                   +    SF 
Sbjct: 239 LKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVTMGARILSGVIAGFSFY 298

Query: 318 VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +   F   +  +   P     L   L  ++    L+ +K
Sbjct: 299 ISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 337


>gi|229496640|ref|ZP_04390354.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
 gi|229316537|gb|EEN82456.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
          Length = 358

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 121/359 (33%), Gaps = 5/359 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTVL 61
             + YI+R    ++  S L I+ +A V  I +RI+   +   SL  I+       +P   
Sbjct: 4   RLDRYIIRLFLGTYFSSILLILSVAIVFDINERISKFLNPECSLYEIVFHYYLNFVPYYA 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M +P    +      + +   TE++ I  +G S   L++P LF A ++++  F+  + +
Sbjct: 64  NMFSPLFVFLSVIFFTSKLAEKTEIIAILASGVSFKRLLRPYLFSAAIVALLTFLLSSFV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   S ++                E++  ++   L+  I  Y+ +N     F++D  + 
Sbjct: 124 IPPG-SRVRNDFQNKYFRDKRQTYAESVQIQVSPSLFAYIHSYSADNKTGYNFMLDKFEH 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
            T K       +         L D  + R       +        T+  +  +     + 
Sbjct: 183 NTIKSRLTAQTAEYDTLNTWRLYDYSITRYGAKRDTLERGTQLDTTINLKPQDFLISAVD 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
           A       L        +     ++    E  KR        I  +I +      +  R+
Sbjct: 243 AETYTTPVLHQYIGELKSRGATNVDLLEVELQKRYAAIPAAFILTIIGVSL---SSRKRK 299

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                 + I +++SF      +              +       I +I  + + KK  +
Sbjct: 300 GGTGLSLAIGIALSFTYILFLTLASSFSASGALSPIVAAQMPNAIYAIIAIFLYKKAPR 358


>gi|330827962|ref|YP_004390914.1| putative permease [Aeromonas veronii B565]
 gi|328803098|gb|AEB48297.1| Predicted permease [Aeromonas veronii B565]
          Length = 362

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 114/352 (32%), Gaps = 20/352 (5%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           + R   ++ L     ++ I    Q ++ I   +       ++  +    +P +  ++ P 
Sbjct: 1   MFRETLKTQLAVLFVLLLIFVSQQFIKIIGDAADGEVPTRLVSTLLLLNLPNMALLMLPI 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +        +   +E+ ++   G S   +++  + LA+L ++    +   I P+ + 
Sbjct: 61  SLFLAILFAHGRLYAESEMTVMHAVGFSHRFVMRSAMLLALLTAVVAAFNTGWIAPQAKE 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD---TQTH 184
              Q+  + +     S+L+   F  LD    +   +   +N  +   I   +        
Sbjct: 121 REYQVIDEFKADPGISFLQAGRFMDLDKGRLVAYIQDLNDNGSKLQKIFVLQRAEGNNPP 180

Query: 185 KIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
            +  A  G + +D    Q + L DG  +  +   K   I  F+ Y L            K
Sbjct: 181 SVVVATEGVVTVDENGLQWLTLMDGSRYEGNFSGKQFQISDFREYGLVIRQQEMERSNRK 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
           A  +    L                   +E   R++  L   +  L+         +  +
Sbjct: 241 AAAKPTMELF----------GTQDNAMMAELQWRISLPLSIPVLTLL---VVPLARVNPR 287

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLL 352
           + +   +  ++ +    F   S     I+     Y P ++L          L
Sbjct: 288 QGRYAKLLPAIMLYLSYFLLLSAARSAIDSGRLPYWPGMFLVPLGYLLFIGL 339


>gi|323188591|gb|EFZ73876.1| hypothetical protein ECRN5871_3010 [Escherichia coli RN587/1]
          Length = 359

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 124/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLEQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 357


>gi|300993118|ref|ZP_07180204.1| hypothetical protein HMPREF9553_04258 [Escherichia coli MS 200-1]
 gi|300305133|gb|EFJ59653.1| hypothetical protein HMPREF9553_04258 [Escherichia coli MS 200-1]
          Length = 359

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 121/354 (34%), Gaps = 3/354 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 GASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                  + + + +    +  +  +++         P+  L L     +  L +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351


>gi|260845739|ref|YP_003223517.1| hypothetical protein ECO103_3663 [Escherichia coli O103:H2 str.
           12009]
 gi|257760886|dbj|BAI32383.1| conserved predicted membrane protein [Escherichia coli O103:H2 str.
           12009]
          Length = 359

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 124/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S +   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLDELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 357


>gi|16273591|ref|NP_439846.1| hypothetical protein HI1704 [Haemophilus influenzae Rd KW20]
 gi|1176472|sp|P45333|LPTF_HAEIN RecName: Full=Lipopolysaccharide export system permease protein
           lptF
 gi|1574558|gb|AAC23350.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
          Length = 372

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 129/354 (36%), Gaps = 15/354 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   T   L    F   +++  +       +N ++ +++      +
Sbjct: 122 PWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQK 181

Query: 183 --THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G    +    Q + L + +    +    D  I  F  Y       ++  
Sbjct: 182 QTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYHAYLGYQSAEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +  +  LS L++ + ++           ++E H R+T  L   +  LI++  +    
Sbjct: 242 TNDEVAELTLSQLIDLDSSSA----------KAELHWRITLILAVPLMALIAVPLSRVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              +  KI P  +   I F +   F       +     +  L    F + ++ L
Sbjct: 292 RQGRFAKILPALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVL 345


>gi|290473525|ref|YP_003466395.1| putative transmembrane protein, transport [Xenorhabdus bovienii
           SS-2004]
 gi|289172828|emb|CBJ79599.1| putative transmembrane protein, transport [Xenorhabdus bovienii
           SS-2004]
          Length = 358

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 112/354 (31%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I ++ LM+   +V ++ +I+ + ++  V     S       +   +P  + +
Sbjct: 5   LDRYIGRTILQTILMTLFTLVSLSGIIKFVDQLRKVGQGEYSAFAAGIYTLLSVPKDIQI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++   +EL+++  +G +R+ +   V+  AI L     +    + P
Sbjct: 65  FFPMAALLGGLLGLGALATRSELVVMQASGFTRLQVAGSVMKTAIPLVFLTMVIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   ++     +     + ++ +  +D     S    N            + + 
Sbjct: 125 QGEQIARNYRSQKMFGGSLMSTAKGMWAKDGNDFVYIKSVDKDNALRDVSIYHFDDNKKL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
             + YA +   D + +   L+  E      I +     +  +      +     +V    
Sbjct: 185 LSVKYAATAVYDQNNRQWKLSQVEESDLRQIGRITGSQRISAEWKSLLTPEKLGVVALDP 244

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
           D      L           +    Y+    K++   L   +  L+++             
Sbjct: 245 DALSIRGLQQYITYLKQGQQDAGRYQLNMWKKVFAPLSVAVMMLMALSFIFGPLRSVAMG 304

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 IS    F V       +  +   P  +  L   L         ++ +K
Sbjct: 305 VRVIAGISTGFIFYVLNEIFGPLSLVYSMPPLLGALLPSLLFFVVSVYFLLHRK 358


>gi|157155522|ref|YP_001464443.1| YjgP/YjgQ permease [Escherichia coli E24377A]
 gi|193067447|ref|ZP_03048415.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
 gi|260869741|ref|YP_003236143.1| hypothetical protein ECO111_3808 [Escherichia coli O111:H- str.
           11128]
 gi|157077552|gb|ABV17260.1| putative permease, YjgP/YjgQ family [Escherichia coli E24377A]
 gi|192959404|gb|EDV89839.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
 gi|257766097|dbj|BAI37592.1| conserved predicted membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|323178688|gb|EFZ64264.1| hypothetical protein ECOK1180_2420 [Escherichia coli 1180]
          Length = 359

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 125/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  +L+     +     + +  +   ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIKDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFTAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 357


>gi|294782104|ref|ZP_06747430.1| permease, YjgP/YjgQ family [Fusobacterium sp. 1_1_41FAA]
 gi|294480745|gb|EFG28520.1| permease, YjgP/YjgQ family [Fusobacterium sp. 1_1_41FAA]
          Length = 359

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 116/352 (32%), Gaps = 1/352 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  +IF+   +  
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRAILKPILAIAIGSAIFILFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    +K +  K         L+E  F    D   I + K   +   + I   +  +
Sbjct: 121 IIPRSFVKLKYVGTKIAYENPVFQLKEKTFIDNLDQYSIYVDKVESDGKAKNIIAFEKPE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +T                +IIL   +        K      F    +         + L
Sbjct: 181 DKTKFPMVLTGEEAFWKDNSIILKQSQFISFDETGKKNLTGTFDEKRVVLTPY-FENLNL 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K  D     + +   N      E +  Y+ E  ++L      +   +I    +     + 
Sbjct: 240 KIKDVEALSITDLVKNIRKVEAEEVLKYKIEIFRKLALIFSTIPLAVIGFCLSLGHHRIS 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           ++       I +            +    + +P+        L       L 
Sbjct: 300 KKYSFVLAMIIIFAYIIFLNIGIVMASAGKLHPFIATWTPNVLLYFLGYKLY 351


>gi|114766152|ref|ZP_01445156.1| permease, YjgP/YjgQ family protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114541612|gb|EAU44654.1| permease, YjgP/YjgQ family protein [Roseovarius sp. HTCC2601]
          Length = 364

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/353 (13%), Positives = 118/353 (33%), Gaps = 13/353 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y  R     FL           ++ ++ ++    S   S   ++ ++   +P+ L 
Sbjct: 2   ILHRYFARRFLTMFLSILTVFALFLALLDLVDQLRRFGSD-VSFGQVVYLTLLNLPSGLY 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   M R++EL+++   G S +T +   + +A+++S       N I 
Sbjct: 61  EILPLVMILATAALFLMMARSSELVVVRAAGRSGLTALAGPVAVALVISGVSVAILNPIV 120

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR-----LDDDLYIKISKYNPNNTLQGIFIVD 177
                    L+   +     +               + D  I+ ++ NP+ T+       
Sbjct: 121 AATSRQSSDLTESYKSNGASTISIGREGLWLRQGGDEGDTVIRAARANPDATVLYEVSFV 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTL--QTESAN 234
             + ++  +   ++    L   A +L D +        S +    +F+   L        
Sbjct: 181 EYEAESGPLRRIEAEEAALQDGAWVLRDAKAWPLQSGRSPEGMSERFERLELPSDLTQDG 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +   +  L                 +       L + +F V   L++  A  
Sbjct: 241 IRDRFGKPSSVAIWDL-PEFIEGLEMAGFSARRHVVWLQMELARPVFLVAMVLVA--AGF 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
                R  +    +  ++ + FG+++  ++    + +N    PIL  ++  I+
Sbjct: 298 TMRPARLGRTGLHVLAAVLLGFGLYYVRNFAQ-IMGENGQLPPILAAWIPPIA 349


>gi|260857119|ref|YP_003231010.1| putative inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|257755768|dbj|BAI27270.1| predicted inner membrane protein [Escherichia coli O26:H11 str.
           11368]
          Length = 359

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 126/360 (35%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +   VL   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVVLVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  +L+     +     + +  +   ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIKDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFTAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 357


>gi|326574663|gb|EGE24599.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis 101P30B1]
          Length = 437

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 129/368 (35%), Gaps = 21/368 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   +  +  +   F+V I    ++++   + +    ++ +L ++ GY  P  L 
Sbjct: 57  ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYNFPYFLE 116

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  + + ++ L ++L         + +
Sbjct: 117 LILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVAK 176

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-----------YNPNNTLQ 171
           P        +  +  +A  F  +    F    D                       +T +
Sbjct: 177 PWGMERATNIWQEQSVAQVFDLIRPQEFISSGDYHLYVGEMGANREFLKDVIIIQMHTAE 236

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAII---LNDGEVHRKSPISKDISIMKFKSYTL 228
              I   +  Q   I +A+S +        I   L  G  +   P S+  S + F+ Y +
Sbjct: 237 PSDIQSRQSHQRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGFERYRM 296

Query: 229 QTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
                    T  ++    + + LL+      + + +  +   +E   RL+     ++   
Sbjct: 297 TLSVKPPEGTSHIRIEGVSTTELLS--IIQGHSKRDNPQEAYAELGYRLSMPWLILLAI- 353

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
             ++A     +  ++ + + +  ++ I          +   I +     P++YL    + 
Sbjct: 354 --LLATPLSYVRPRQGRWYKLVPAILIYVAGVLVVISLKDTIAK-GKLSPVIYLAALLMM 410

Query: 348 SIFLLMIK 355
            +  + + 
Sbjct: 411 MVVAMYLN 418


>gi|326561253|gb|EGE11612.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis 46P47B1]
          Length = 437

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/368 (13%), Positives = 130/368 (35%), Gaps = 21/368 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   +  +  +   F+V I    ++++   + +    ++ +L ++ GY  P  L 
Sbjct: 57  ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYNFPYFLE 116

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  + + ++ L ++L         + +
Sbjct: 117 LILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVAK 176

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-----------YNPNNTLQ 171
           P        +  +  +A  F  +    F   DD                       +T +
Sbjct: 177 PWGMERATNIWQEQSVAQVFDLIRPQEFISSDDYHLYVGEMGANREFLKDVIIIQMHTAE 236

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAII---LNDGEVHRKSPISKDISIMKFKSYTL 228
              I   +  Q   I +A+S +        I   L  G  +   P S+  S + F+ Y +
Sbjct: 237 PSDIQSRQSHQRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGFERYRM 296

Query: 229 QTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
                    T  ++    + + LL+      + + +  +   +E   RL+     ++   
Sbjct: 297 TLSVKPPEGTSHIRIEGVSTTELLS--IIQGHSKRDNPQEAYAELGYRLSMPWLILLAI- 353

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
             ++A     +  ++ + + +  ++ I          +   I +     P++YL    + 
Sbjct: 354 --LLATPLSYVRPRQGRWYKLVPAILIYVAGVLVVISLKDTITK-GKLSPVIYLAALLMM 410

Query: 348 SIFLLMIK 355
            +  + + 
Sbjct: 411 MVVAMYLN 418


>gi|170018762|ref|YP_001723716.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|297517383|ref|ZP_06935769.1| hypothetical protein EcolOP_07055 [Escherichia coli OP50]
 gi|300916914|ref|ZP_07133617.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300923636|ref|ZP_07139664.1| hypothetical protein HMPREF9548_01829 [Escherichia coli MS 182-1]
 gi|300950817|ref|ZP_07164703.1| conserved hypothetical protein [Escherichia coli MS 116-1]
 gi|300958360|ref|ZP_07170501.1| hypothetical protein HMPREF9547_04074 [Escherichia coli MS 175-1]
 gi|312972760|ref|ZP_07786933.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|169753690|gb|ACA76389.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|242378535|emb|CAQ33321.1| ybl135 [Escherichia coli BL21(DE3)]
 gi|284923006|emb|CBG36098.1| putative permease [Escherichia coli 042]
 gi|300314944|gb|EFJ64728.1| hypothetical protein HMPREF9547_04074 [Escherichia coli MS 175-1]
 gi|300415884|gb|EFJ99194.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300420077|gb|EFK03388.1| hypothetical protein HMPREF9548_01829 [Escherichia coli MS 182-1]
 gi|300449912|gb|EFK13532.1| conserved hypothetical protein [Escherichia coli MS 116-1]
 gi|310332702|gb|EFP99915.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|323936016|gb|EGB32311.1| permease YjgP/YjgQ family protein [Escherichia coli E1520]
 gi|323941919|gb|EGB38098.1| permease YjgP/YjgQ family protein [Escherichia coli E482]
 gi|332344938|gb|AEE58272.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 359

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 124/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I + G S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +  +   ++     S +   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMDLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYWYDR 357


>gi|256027205|ref|ZP_05441039.1| hypothetical protein PrD11_04296 [Fusobacterium sp. D11]
 gi|260494013|ref|ZP_05814144.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|289765182|ref|ZP_06524560.1| conserved hypothetical protein [Fusobacterium sp. D11]
 gi|260198159|gb|EEW95675.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|289716737|gb|EFD80749.1| conserved hypothetical protein [Fusobacterium sp. D11]
          Length = 359

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 115/340 (33%), Gaps = 5/340 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVAMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      T  +RN+E + + + G S   ++KP+L +AI  +IF+   +  
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSAGMSIRDILKPILAIAIGAAIFIVFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    +K +  K         L+E  F    D   I + K + +   + I   +   
Sbjct: 121 IIPRSFIKLKYVGTKIAYENPVFQLKEKTFIDNLDGYSIYVDKVDSDGKAKNIIGFEKSK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
            ++                AII+ + +        K   I  F    +  +      S  
Sbjct: 181 DKSKFPLVLTGEEAFWKDSAIIVKESQFVSFDETGKKNLIGTFDENRIVLKPNFQELSIK 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           +      +++ L+             +  Y+ E  ++L      V   +I    +     
Sbjct: 241 IKDVEALSITELIRGLKKIEATE---VIKYKIEIFRKLALVFSTVPLAVIGFCLSLGHHR 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
           + ++       I +            +    + NP+    
Sbjct: 298 ISKKYSFILAMIIVFAYIIFLNVGIVMATAGKLNPFIATW 337


>gi|157162459|ref|YP_001459777.1| YjgP/YjgQ permease [Escherichia coli HS]
 gi|188495921|ref|ZP_03003191.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
 gi|209920455|ref|YP_002294539.1| hypothetical protein ECSE_3264 [Escherichia coli SE11]
 gi|300815539|ref|ZP_07095763.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|157068139|gb|ABV07394.1| putative permease, YjgP/YjgQ family [Escherichia coli HS]
 gi|188491120|gb|EDU66223.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
 gi|209913714|dbj|BAG78788.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|300531468|gb|EFK52530.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|320201893|gb|EFW76468.1| Permease Ygh-P2, YjgP/YjgQ family [Escherichia coli EC4100B]
 gi|323183568|gb|EFZ68965.1| hypothetical protein ECOK1357_3348 [Escherichia coli 1357]
 gi|323946694|gb|EGB42715.1| YjgP/YjgQ permease [Escherichia coli H120]
 gi|324018178|gb|EGB87397.1| hypothetical protein HMPREF9542_03233 [Escherichia coli MS 117-3]
 gi|324119791|gb|EGC13671.1| YjgP/YjgQ permease [Escherichia coli E1167]
          Length = 359

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 124/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S +   + +
Sbjct: 181 DLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLDELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 357


>gi|237744434|ref|ZP_04574915.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229431663|gb|EEO41875.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 359

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 115/340 (33%), Gaps = 5/340 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVAMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      T  +RN+E + + + G S   ++KP+L +AI  +IF+   +  
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSAGMSIRDILKPILAIAIGAAIFIIFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    +K +  K         L+E  F    D   I + K + +   + I   +   
Sbjct: 121 IIPRSFIKLKYVGTKIAYENPVFQLKEKTFVDNLDGYSIYVDKVDSDGKAKNIIGFEKSK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
            ++                AII+ + +        K   I  F    +  +      S  
Sbjct: 181 DKSKFPLVLTGEEAFWKDSAIIVKESQFVSFDETGKKNLIGTFDENRIVLKPNFQELSIK 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           +      +++ L+             +  Y+ E  ++L      V   +I    +     
Sbjct: 241 IKDVEALSITELIRGLKKVEATE---VIKYKIEIFRKLALVFSTVPLAVIGFCLSLGHHR 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
           + ++       I +            +    + NP+    
Sbjct: 298 ISKKYSFILAMIIVFAYIIFLNVGIVMATAGKLNPFIATW 337


>gi|217966587|ref|YP_002352093.1| permease YjgP/YjgQ family protein [Dictyoglomus turgidum DSM 6724]
 gi|217335686|gb|ACK41479.1| permease YjgP/YjgQ family protein [Dictyoglomus turgidum DSM 6724]
          Length = 364

 Score =  103 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 118/358 (32%), Gaps = 3/358 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K++  YI   I   F +     + +  +  + +  + +     S  ++LK+  Y IP++ 
Sbjct: 6   KTYHKYIFSEILGPFFLGIFGFILVMLIQILYEFSDFIIMRRVSFEVVLKLLYYKIPSLF 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V P             + R+ E+  + ++G   ++L    L  +ILLS+ L+     +
Sbjct: 66  VFVIPVSLLFAIIFSFGRLMRDGEIFAMRSSGIYFLSLTLTPLLFSILLSLILWFFTYSL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+      +L  K           EN+FF  ++  Y  + K   N  +    +V    +
Sbjct: 126 IPESNYRSNRLIQKYFFLNPAPIKGENVFFHDEEGRYYYVKKIIENRNVMQNVLVFDTSS 185

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                    +     +R ++IL +G VH     S  +   KF+ + +             
Sbjct: 186 SNKYPIIYTAEEAIWNRDSLILKNGVVHHLGDDSFVVWEGKFEEFKINLPQDFMYIFYRD 245

Query: 242 --ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               +   + L     N          +Y  E + R+ Q +   IF L+           
Sbjct: 246 RTPQEMPTNEL-KKRINVYKKAGISARSYLVEDYLRIAQSIAVPIFALMGFSVILLTGRG 304

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            +        I     +G              +P+    L        S+ + + K +
Sbjct: 305 GRLWGTAFSIIIAFFYYGFNIIARSFGEYAVFSPFLSAWLPNITLGSLSLGVFIWKVR 362


>gi|222034702|emb|CAP77444.1| hypothetical protein LF82_487 [Escherichia coli LF82]
 gi|312947540|gb|ADR28367.1| hypothetical protein NRG857_14785 [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 359

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 125/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  +L+     +     + +  +   ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYWYDR 357


>gi|114704780|ref|ZP_01437688.1| hypothetical protein FP2506_07586 [Fulvimarina pelagi HTCC2506]
 gi|114539565|gb|EAU42685.1| hypothetical protein FP2506_07586 [Fulvimarina pelagi HTCC2506]
          Length = 360

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/349 (12%), Positives = 104/349 (29%), Gaps = 4/349 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   Y  R    +F  + + +  +  +I +++       + +SL +LL  S   +P  + 
Sbjct: 5   TLNRYFFRLYLVNFFSTVVAVSALVLLIDLVELGRRSVLADQSLGVLLLFSALRVPAFME 64

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              PF     +   L S+NR  EL++    G S   ++ P +  ++ L +    + N + 
Sbjct: 65  QAFPFIILFSSIFTLISLNRRLELVVARAAGVSAWQILMPFIAGSLFLGLLATFAYNPLS 124

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
              ++    + + A+     S   +  + R + D    I           +    S    
Sbjct: 125 AYTKAQAANIESAAEGREVASSALQTPWLRQNADGVRSIMGATQVAENGRVLSNVSAFVM 184

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                                      R + I      +                 +   
Sbjct: 185 ADDGSVETRIDAPRAELGNQEWILLRPRVTRIGYTPRDLVEYRLPTSLRPEYIEQRLADP 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              ++  L +   +           +  ++H  + Q    V   L++   A      R  
Sbjct: 245 ETISIWELGSK-IDVAASLGFNSMAFSMQYHTLIAQPALFVAMTLLAATVA--TRFSRTG 301

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +        +   F ++   +++   +  N    PI+  +   +++   
Sbjct: 302 QPGRIFVGGVLAGFVLYVV-TFLAKALGSNDVVPPIVAAWFPVLAAGLF 349


>gi|297569344|ref|YP_003690688.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925259|gb|ADH86069.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 361

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 115/360 (31%), Gaps = 9/360 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+     R+  +    +V I  +I   +R++    +   +   +      IP +  
Sbjct: 4   LLDRYLFWQFTRNLALVLGGLVAIYLLIDFFERVDSFLDAGLGIGTAITYLLLKIPLIFE 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P C  +     L  +NR+ EL+ + + G S   +I+P+L  A+  S     +   + 
Sbjct: 64  QLIPVCLLLAGIITLGVLNRHNELMALKSGGLSVRRIIRPLLLAALFFSGLALAAGQWLL 123

Query: 123 PKCRSTIKQ-LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           P   +   +    + +             +          ++ +   +    F   + + 
Sbjct: 124 PPTLAETNRLWYEEVRQQTPEGIERNGRIYYRGAKGIYSFAQPDDPASGLPDFSFTAWNE 183

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--TIV 239
           +        +     +     L DG++   +   +  + + F   T++            
Sbjct: 184 EYQLARLLTAAIAHWEAGRWTLLDGQLKVLTADDQYRTTI-FNEMTIELPERPEDFFLPP 242

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               ++ LS LL                 R E  ++++     +   L+ I         
Sbjct: 243 YALAERPLSELL--ARALAPEDSPRRYEARLELQQKISYIFLGLPLLLVGIPLLLAMHRG 300

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIKKK 357
           R R     +  S  ++F V WG   I   +    +  P L  +L      S+    I ++
Sbjct: 301 RGRDLALAVPASCIMAFAV-WGLWSICQALASAGHLSPALAAWLVHLLAGSLGFYFILRQ 359


>gi|301643655|ref|ZP_07243696.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|301078039|gb|EFK92845.1| conserved hypothetical protein [Escherichia coli MS 146-1]
          Length = 349

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 121/352 (34%), Gaps = 3/352 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I + G S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +  +   ++     S +   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMDLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                  + + + +    +  +  +++         P+  L L     +  L
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVAL 349


>gi|121997476|ref|YP_001002263.1| permease [Halorhodospira halophila SL1]
 gi|121588881|gb|ABM61461.1| permease YjgP/YjgQ family protein [Halorhodospira halophila SL1]
          Length = 350

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/357 (10%), Positives = 108/357 (30%), Gaps = 8/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    Y+ R +  + L++   I+ + +V  ++   + V+        +L  +    P +
Sbjct: 1   MRILTGYLARTVIAASLVALAAILALDFVFSMV---DGVADDGLDTTTMLLKALLGAPAL 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                PF   +     L  +    EL  +   G S + +   VL   ++L++       +
Sbjct: 58  AYEAFPFATLIGALMGLGGLAARQELTAMRAAGVSVVQIAGAVLVGGVILALLATAVGEL 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P               A       +   +  D   +++  +    + L+ + +    +
Sbjct: 118 VVPPAERQ-AAAVRGLSEADELRTGPDGALWARDGRDFLRAERPRSASHLESVTLYRFVE 176

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q  +   A     +  +    L        +    +   ++  ++         + +V 
Sbjct: 177 GQLTERIDADGAHYEDGQWR--LEGVVKTVYADHRLERRELEAWAWQGALSPDVLAVVVA 234

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +   +  L        +        YR    +++   L  +   L++I          
Sbjct: 235 DPSTLPVPEL-WTYIQYLDANELDSGPYRLALWEKVATPLATLAMLLVTIPLVFTAVRSS 293

Query: 301 QRKKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              +   I + + ++F +               P    +L +  F    ++  +  +
Sbjct: 294 GAGQRIVIGVLVGVAFFLLNRALGQAGVVYGVPPSLSALLPVVAFAALGLWGTLRVR 350


>gi|194431684|ref|ZP_03063975.1| putative permease, YjgP/YjgQ family [Shigella dysenteriae 1012]
 gi|194420040|gb|EDX36118.1| putative permease, YjgP/YjgQ family [Shigella dysenteriae 1012]
 gi|320180990|gb|EFW55911.1| Permease Ygh-P2, YjgP/YjgQ family [Shigella boydii ATCC 9905]
 gi|332086635|gb|EGI91775.1| hypothetical protein SB521682_3569 [Shigella boydii 5216-82]
 gi|332088218|gb|EGI93339.1| hypothetical protein SD15574_3351 [Shigella dysenteriae 155-74]
          Length = 359

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 125/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + ++   +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVALMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  +L+     +     + +      ++     S +   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWVLHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYWYDR 357


>gi|259907067|ref|YP_002647423.1| Inner membrane protein [Erwinia pyrifoliae Ep1/96]
 gi|224962689|emb|CAX54144.1| Inner membrane protein [Erwinia pyrifoliae Ep1/96]
 gi|283476867|emb|CAY72716.1| beta-lactamase/D-alanine carboxypeptidase ampH [Erwinia pyrifoliae
           DSM 12163]
          Length = 358

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 117/355 (32%), Gaps = 2/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + + +   +V ++ +I+ + ++        ++      +   +P  + +
Sbjct: 5   LDRYIGKTIFNTIMATLFMLVSLSGIIKFVDQLRKTGQGEYTVLGAGLYTLLSVPKDIEI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++ + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 65  FFPMAALLGALLGLGALAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIGEFVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+  +  +    +  L+ +  D+        + N            + + 
Sbjct: 125 QGEQMARNYRAQQLMGGSLLSTQSGLWAKDGDNFIFIERIRDGNQLSGISIYNFDHERRL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   + D++   L   +    S   +   S      +           + L  
Sbjct: 185 KTVRYAASAKYNADKKLWELAQVDQSDLSDAQQIKGSQTLSGEWNTTLTPDKLGVVALDP 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              ++S L +          ++   Y+     ++ Q L   +  L+++            
Sbjct: 245 GALSISGLYS-YSKYLKQSGQMAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVSM 303

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  IS    F V       +  +   P  +  L       +    +++K++
Sbjct: 304 GMRVVTGISFGFLFYVLDQIFGPLSLVYNIPPILGALLPSAAFFAISLAMLVKRR 358


>gi|193062018|ref|ZP_03043114.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
 gi|300824069|ref|ZP_07104190.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|331669796|ref|ZP_08370641.1| putative permease [Escherichia coli TA271]
 gi|192932238|gb|EDV84836.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
 gi|300523459|gb|EFK44528.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|331062709|gb|EGI34623.1| putative permease [Escherichia coli TA271]
          Length = 359

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 126/360 (35%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + + I+   ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   N      +    YR    ++L   +  +   L+++          
Sbjct: 241 PGNSFSVRQL-NHYINYLQETGQPSSEYRLALWEKLGHPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L++   + +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALILVYLFDR 357


>gi|119944177|ref|YP_941857.1| permease YjgP/YjgQ family protein [Psychromonas ingrahamii 37]
 gi|119862781|gb|ABM02258.1| permease YjgP/YjgQ family protein [Psychromonas ingrahamii 37]
          Length = 354

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/339 (11%), Positives = 103/339 (30%), Gaps = 3/339 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + I  +  +S   ++ ++ +I+ ++++  +   +             IP  
Sbjct: 1   MGILDRYIGKTIFAATFLSLFVLIGLSSIIKFVEQMGSIGVGSYDAWNAAYFVILKIPIE 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +     L S+  ++EL+++   G S++ +   VL  AI + I + +    
Sbjct: 61  LSVFFPMAALIGALIGLGSLANSSELVVMQAAGISKLRIAGAVLKTAIPMVIVVMVLTEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P        +   A+        +  ++ +  D         + N            +
Sbjct: 121 VVPITDKEAYSMRYMAKRGEVQVSNQYGVWVKDADSFVSIERMNSKNELFHVQLYFFDEN 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +      A+  +           D           ++  M    +  +        I+ 
Sbjct: 181 LKLDHAILARKAAFKEGSWF--FGDVSQTNFLEDRTEVKRMSNYIWETKLTPKKLEVILG 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           + +  ++  + N          +  + +   F ++       V+  L+S+          
Sbjct: 239 EPDKMSMRDIYNYII-YLENNEQDAKRFWLIFWRKAVLPFTIVVMMLLSVSFIFGGLRSV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
                    I+   +F V          +   P  +  L
Sbjct: 298 TMGTRLIFGIAAGFTFYVSGELFGPFSLVFNWPPILGAL 336


>gi|191172563|ref|ZP_03034103.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
 gi|190907231|gb|EDV66830.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
 gi|324011926|gb|EGB81145.1| hypothetical protein HMPREF9533_04084 [Escherichia coli MS 60-1]
          Length = 359

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 123/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 GASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYWYDR 357


>gi|218459006|ref|ZP_03499097.1| putative permease protein [Rhizobium etli Kim 5]
          Length = 250

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 92/236 (38%), Positives = 149/236 (63%), Gaps = 1/236 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 11  MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  LI+P+L LA ++S+F F  +NI
Sbjct: 71  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSILIRPILLLAAVISVFSFFVDNI 130

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP+ ++  +Q+ A+    L  S +EE  F +LD+ LY++IS+      L+G+F+ D RD
Sbjct: 131 VEPRAKTVARQMIAETYADLLSSVIEEKTFRKLDEGLYVQISQRLAGRMLKGLFVADERD 190

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                IYYA+ G++D     +I++DGEVHRK+P   ++S++ F SY+        S
Sbjct: 191 PAYELIYYAKEGAVDDTGTTLIMHDGEVHRKTPDG-NVSVINFDSYSFDLSDMTES 245


>gi|308272621|emb|CBX29225.1| hypothetical protein N47_J02060 [uncultured Desulfobacterium sp.]
          Length = 409

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 133/363 (36%), Gaps = 12/363 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y+ + I   F ++ LF  F+  + +IL   NLV +   SL  +  +  Y+IP  L
Sbjct: 20  TIVSRYLFKEILSPFAINTLFFTFLFLMAKILFITNLVVNYNMSLPKIGLMLLYIIPNFL 79

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V P    M         + + E++ +   G S   L+ PVL    +  I  F+     
Sbjct: 80  VFVIPMSVMMAILLTFLRFSSDNEIIALKTGGISIYGLLPPVLIFCFIGCILTFLISLYA 139

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRD 180
            P  R +I++L+ +   +     L+E  F     D+ + ++K +   + L  +F+ D R 
Sbjct: 140 IPWGRLSIEKLTMEIAQSNFEIGLKERTFNDNFKDIMLYVNKVDLKKDELIDVFVEDGRS 199

Query: 181 TQTHKIYYAQSGSIDLDR----QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                   A  G +  +       + L DG +++ +  +K ++ + F +Y +  +  N+ 
Sbjct: 200 EDMASTIIAPKGVLLFEENRLSFRLRLYDGVINQVNTKNKSVNSIGFDTYDINLDLKNAF 259

Query: 237 TIVLKAND------QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           + + K              LL+   +              E HK+ +      + G++S+
Sbjct: 260 SEMEKTGQRKNEKKMYFYELLDYIDSFKIKNSRYYNALF-ELHKKFSVPFACFVLGILSV 318

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
               +     +   +    I   + + +      +       P+        L     I+
Sbjct: 319 ALGTQLKSATRSFGLGLGLIFFLLYYLILSVGYALGETGFYPPFIGMWAPNILIGSIGIY 378

Query: 351 LLM 353
           L +
Sbjct: 379 LFI 381


>gi|281422528|ref|ZP_06253527.1| putative membrane protein [Prevotella copri DSM 18205]
 gi|281403352|gb|EFB34032.1| putative membrane protein [Prevotella copri DSM 18205]
          Length = 413

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 112/363 (30%), Gaps = 7/363 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  + YI++     +  S   I+ IA V    + ++  +        I+       +P  
Sbjct: 54  KKLDWYIIKKFLGYYFFSIALIISIAIVFDFNENLSKFTEHHAPARAIIFDYYANFVPYF 113

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +     +      T +  N+E++ I  +G S   L++P +   +LLS   F     
Sbjct: 114 ANLFSALFVFVAVILFTTKLASNSEIIAILASGVSFKRLLRPYMITCVLLSALSFGLSAY 173

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +      +     +  E          +       N      G  +   +D
Sbjct: 174 VIPHGTVIRQNFETMYKNKKKNTSAENVQLQVDKGVIAYMQHYDNSMKRGYGFCLDKFQD 233

Query: 181 TQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +      A       I   +    L++ ++ +   + + I+    K   +  E  +   
Sbjct: 234 KKLVSHLTAMDIQYDTISDSKYHWKLSNWKIRKLQGMKEHITSGAQKDTIIMMEPTDLVY 293

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +        L +      N     +  Y  E+HKR+       I  +I +      A
Sbjct: 294 SKGQQETFTSPELRDYISKQINRGSGNVVQYEVEYHKRIASSFASFILTIIGVSL---SA 350

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R+      + + L++SFG     +       Q  +   +       + +I      +K
Sbjct: 351 RKRKGGMGAALGVGLALSFGYIMLQTVSATFAIQANFPSVLAAWLPNFLFAIVAYFCYRK 410

Query: 358 YTK 360
             +
Sbjct: 411 APR 413


>gi|242279363|ref|YP_002991492.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
           2638]
 gi|242122257|gb|ACS79953.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
           2638]
          Length = 376

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/354 (11%), Positives = 96/354 (27%), Gaps = 9/354 (2%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+L+       +       I  +  +  R++    +   +  +LK     +P +   + P
Sbjct: 13  YVLKQNIFLMCVCLGVGTGIYLLSDLFDRLDDFIEAGLGMGTILKYFLVKMPLIFSQILP 72

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F +     L  M R+ ELL +   G S I  ++  +  A++ S    +   +I     
Sbjct: 73  AVFLISMIVQLCVMARSKELLALRTGGLSLIWFLRFFVIYAVIWSFGQLLFSQVIGVYGE 132

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTH-- 184
               ++  +               +  +    ++  +  P         V          
Sbjct: 133 QEAYRIWKEDVRKSMLDKRVLKNIWLKEGRFVVEAKEVMPFGNRAKDITVYEFAEGNGGI 192

Query: 185 KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
           K       +    +    L +         +     +      L           +    
Sbjct: 193 KRVITSESAEVSSKYGWKLENAVELSPDKFASQKHPIFTMPIKLNLNVFKVVDPDIDPAQ 252

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
             L  L +            ++   + +H +       +   L+S+              
Sbjct: 253 LPLWQL-DQVIEQLKLSGSSVDRLITAWHSKWAYAFSLLTMALVSLALVTI-----TENI 306

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
              I + L+I F  ++    +           PI+  +L  I    L + +  +
Sbjct: 307 YLNIGLGLAIIFT-YYALFMVGASAGDTGALPPIVAAWLGNILVSSLALGRIAW 359


>gi|222054622|ref|YP_002536984.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
 gi|221563911|gb|ACM19883.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
          Length = 357

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 118/359 (32%), Gaps = 12/359 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F  ++     R   +     + I  V+  L++I   +    +   +       IP V
Sbjct: 1   MKIFNRFVAAAYARILCLCLGTFIAIFLVVDFLEKIGRFA--GANPAYIALFFLTRIPEV 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +   +     M T   L   + ++EL  +   G S   +  P+L +A  +SI        
Sbjct: 59  ICQTSAMAVLMATLLTLGMFSMSSELTAMRGCGLSLGRIAMPILVIAFSVSILNLAINEY 118

Query: 121 IEPKCRST-IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P+C            +      +  +   +  DD+  +K + ++P +       V   
Sbjct: 119 VLPRCIVQGQYIREVLIEKKSPNLFFRQMNIWHRDDNFILKANLFDPASGQLKGITVWRM 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTI 238
                      + +  LD    +L D      S  +    S +      L   + +   +
Sbjct: 179 GAGMQPEQRLDAATAKLDAGGWLLTDVVAREFSESNIIKTSEVASMPVPLNLRATDLKVM 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              +++  +  L                 Y ++ H R++    P++   + +  A +   
Sbjct: 239 RKFSDNMGIREL-AAYCEKLRKGGYDPTRYLAQMHGRISLAFAPLVMAFLGVPFAVRG-- 295

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLM 353
            R       I  SL I FG F   + I+    Q     P++  +    +F +  I+  +
Sbjct: 296 SRSSGIALGISASLGIGFGFF-VLNSIVLSFGQAGVLSPVISAWSTNGIFLMIGIWFAL 353


>gi|183600431|ref|ZP_02961924.1| hypothetical protein PROSTU_04002 [Providencia stuartii ATCC 25827]
 gi|188020227|gb|EDU58267.1| hypothetical protein PROSTU_04002 [Providencia stuartii ATCC 25827]
          Length = 358

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 120/355 (33%), Gaps = 2/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I  S LM+   +V ++ +I+ ++++  V     +       +   IP  + +
Sbjct: 5   LDRYIGRTILNSILMTLFMLVSLSGIIKFVEQLRKVGDGEYTTLGAGVFTLLTIPKDIDI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++   +EL+++  +G +R+ +   V+  AI L I   +    + P
Sbjct: 65  FFPMAALLGALLGLGALASRSELVVMQASGFTRLQIALSVMKTAIPLVIVAMLIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                 +   A+  +  +    +E ++ +   D        +  +  +      +   + 
Sbjct: 125 SADQWARNYRAEKIVGNSLVVTDEGMWAKDGPDFIHIQRVSDTTSIQEVSIYRFNEQHKL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTIVLKA 242
             + +A SG+ D D Q  +L+  +    S   K     +    +           + L A
Sbjct: 185 TSVMFASSGAYDKDNQLWVLSQVDESILSSEKKITGSQRLTYEWKTNLTPEKLGIVSLSA 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++  L            ++   Y     K++   L   +   +++            
Sbjct: 245 DSLSIRGLYQ-YIAYLKESGQVAAVYELSMWKKILAPLSAAVMMFMAVSFIFGPLRTVPM 303

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I     F V          +   P  I  L   +  +    +L++K+K
Sbjct: 304 GVRVVSGIVGGFLFYVLNEGFGKWSLVYSIPPIIAALLPSVLFLGVSIVLLVKRK 358


>gi|256019097|ref|ZP_05432962.1| hypothetical protein ShiD9_09284 [Shigella sp. D9]
          Length = 359

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 124/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S +   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLDELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYWYDR 357


>gi|160872818|ref|ZP_02062950.1| permease [Rickettsiella grylli]
 gi|159121617|gb|EDP46955.1| permease [Rickettsiella grylli]
          Length = 355

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/353 (12%), Positives = 107/353 (30%), Gaps = 2/353 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R I  + L     ++ +  +IQ++     + +   +L          +P+ 
Sbjct: 1   MNIIDRYLGRTIIHTTLSVLGILLILFALIQLISETRDIGTGHYTLTSAFSYVLLTLPSQ 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    + +   L  +++++EL+I+   G S   +   ++   + +     +    
Sbjct: 61  FYNFFPIAILLGSILGLNVLSKHSELMILHANGVSLYQMAWSLIKATLWMVFITVLIGEG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +               ++   +  D   +I I        L  +      D
Sbjct: 121 LAPHAARLAESHKFFLTTKGQTLTTQQGSVWIRDGHNFIYIQSILDPTHLNHVNCYQFDD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                        ++   +A    D      +        +  + +         +  ++
Sbjct: 181 DNNLLKASFAK-QVNYKAKAWHAYDIATSLITLNKVKKKFIAHEIWPFSFSPKLLTISII 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K  + +L  L +   +           Y   F KR+ + +   +   ++I  + K     
Sbjct: 240 KPEEMSLRQL-HEYIHYRKKNHLNTSPYSFAFWKRIVEPISLWVMMCLAIPFSFKHLRTL 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                    I++  SF +   F      + Q P ++  L      +    LLM
Sbjct: 299 ATSLKTLAGITIGFSFYLLNNFLGPFAIVYQWPPFLAALLPLFIFMLIAILLM 351


>gi|58580459|ref|YP_199475.1| hypothetical protein XOO0836 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425053|gb|AAW74090.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 396

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 105/364 (28%), Gaps = 13/364 (3%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V         +   + +    +    Y +P     +
Sbjct: 37  DWYVGRVVLSTVLLTWAVLLGLDLVNAFASEAKDIGQGSYTFGHAVAYVAYTVPRRAYTL 96

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   I P 
Sbjct: 97  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPW 156

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI--------SKYNPNNTLQGIFIV 176
            ++    L A A+     +       +  + D ++             +    L  + + 
Sbjct: 157 AQNQADTLKASARYNSDMAASLYAGLWAREGDTFLNALSGEEKLLDGGDTALDLHDVRLY 216

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
               +   +     S +   D     L           S          +  Q   A  +
Sbjct: 217 HLDSSGRMQQLTYASVAEHRDG-RWTLRQVRRDTFQERSVQRETFPELPWQSQLNPAALA 275

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + K  + +   L   +    +        Y  ++  R    L  +   + +I  +   
Sbjct: 276 AGLAKPRNLSAHDL-EQSIEYRSRNGLDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGS 334

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFLLMIK 355
              R       +F+ +  + G +    +           Y     L    +  +   + +
Sbjct: 335 L--RSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFR 392

Query: 356 KKYT 359
           ++ +
Sbjct: 393 RRSS 396


>gi|301058944|ref|ZP_07199913.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
 gi|300446940|gb|EFK10736.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
          Length = 358

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/363 (13%), Positives = 122/363 (33%), Gaps = 19/363 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YI+R I +  +  C  ++ I       + +          + ++ +    I   L 
Sbjct: 2   IIDRYIMREISKPAMTICTVLMGIFGSYIATRYLEDAVQGQLPGSTVILLVLLRIAISLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +           N E+  +   G S + ++KPV+ LA+   + +      I 
Sbjct: 62  VLLPTTLYLSVMIAFGRFYMNAEMTGMSACGISMVRVLKPVMLLAVTAGMIVACFSLYIR 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   +   +L   A++    + ++   F+ ++D   +  +    +   + + +       
Sbjct: 122 PWAWNQFFELKTGAKVDFDITRMKGGNFYEIEDGERVLFADKVDHGKHRALHVFMQIKRH 181

Query: 183 THKIYYAQSGSIDL-----DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                     +            ++  +G ++  S   K   I++F++  +   S N   
Sbjct: 182 GELEIVYAESATQRFRNTTPEPVLVFQNGRLYTFSETEKTWKILQFRNLEMSLTSNNVEP 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +  KA   +   L +                 +E   RLT     ++  L+ +       
Sbjct: 242 LKQKAKAFSTEQLWH----------SDHPEALAELQWRLTAPFSTILLALLGVPL---SR 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              ++ K   + + + + F V++  S I  K         +  ++   I    LL++  +
Sbjct: 289 SFPRQGKYTKVPLGI-LVFAVYYNLSAITKKWVGQGVVGGVPGIWWIQILLACLLLVLLR 347

Query: 358 YTK 360
             +
Sbjct: 348 PPR 350


>gi|29654138|ref|NP_819830.1| putative permease [Coxiella burnetii RSA 493]
 gi|161831591|ref|YP_001596891.1| putative permease [Coxiella burnetii RSA 331]
 gi|29541404|gb|AAO90344.1| hypothetical membrane spanning protein [Coxiella burnetii RSA 493]
 gi|161763458|gb|ABX79100.1| putative permease [Coxiella burnetii RSA 331]
          Length = 355

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 113/358 (31%), Gaps = 4/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI   I  +  +  L ++ I   ++ + +++ + S    L          +P+ 
Sbjct: 1   MPLLNRYIRNAIITATALVMLVLLGIEMFMEFIGQLSQIGSVHYGLGQAFLYVLTQLPSD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  +  ++EL+++   G S   +   V+  A+L+ + +     +
Sbjct: 61  LYQLFPMAGFLGCLIGLGRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVVMTFIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+  ++ ++                +++           S    N   +      +  
Sbjct: 121 IAPQLEASGEETKLTELSKAVGYKALGDVWLHGAQSFIHIGSVDAKNKISEVSQFFINNK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q     YA  G         IL + +  + +P       +     T+     +      
Sbjct: 181 HQLLSAVYAPKGEYVKG--HWILYNVKQTQFTPNRTTEKKIAKFPLTIVFNPDHLQQGRK 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             + Q++  L +    +     +    Y   F +R  Q L  V+   + +          
Sbjct: 239 MVDRQSIVGLYHTIRYHQQAGLQT-SRYVFAFWQRFIQPLTTVVMICLGVPFIFGSLRQA 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSY-IIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    I +  +F +   F        +  P +  ++   LF +  + LL   ++
Sbjct: 298 SMGLRILTGIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVLFAVGCVILLRYSRR 355


>gi|255263663|ref|ZP_05343005.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
 gi|255105998|gb|EET48672.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
          Length = 363

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/336 (12%), Positives = 100/336 (29%), Gaps = 9/336 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y  R    +FL   +    I   + +++++   S    S    + ++    P  L 
Sbjct: 2   ILHRYFARRFFLAFLGVFVIFFAILGFLDMVEQLGKFSGDDVSFTQTVGLTLLNTPQALY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +  S+ R++E+++    G S I  +   +F+A+L+ +F     N I 
Sbjct: 62  RILPLVMILSTIALFLSLARSSEMVVTRAAGRSAIRALSAPIFVAVLIGLFAVAVLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEE----NLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
                  ++ ++  +               L    +    +  ++       +   +   
Sbjct: 122 AATSQEYEKRASDYRSDDAQVLSVSAEGLWLRQGDNTQQTVIRAEAATLEGTELSRVTFL 181

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK--SYTLQTESANSS 236
             T    I   ++ S  L   A  L + +       + + S  K                
Sbjct: 182 SFTDAGPITRIEADSARLTPGAWELTNAKSWPLDAPNPEASSTKHDVLRVPSTLTRDQIR 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                 +   +  L                 +   F+  L    F V   +++  A    
Sbjct: 242 DGFGTPSAIPIWEL-PAFIKQLETAGFSARRHAVWFNMELALPAFMVSMVMVA--AGLTM 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
              R  +    +  ++ + F  ++  ++     E  
Sbjct: 299 RHQRGGRVGLSVLAAIMLGFAFYFLRNFAQILGENG 334


>gi|296137010|ref|YP_003644252.1| permease YjgP/YjgQ family protein [Thiomonas intermedia K12]
 gi|295797132|gb|ADG31922.1| permease YjgP/YjgQ family protein [Thiomonas intermedia K12]
          Length = 365

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 111/359 (30%), Gaps = 8/359 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   ++L  +  +  +  L  + + + I +L  ++ +     SL+  L      +P+ 
Sbjct: 1   MRTVRRFLLLHVLSAVGLVTLAFLALLFFIDMLNDLSNLGKPGFSLSGTLLHVALSMPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    +     L S+  ++E  I+  +G S    +  +L LA  L + LF+    
Sbjct: 61  AYEVLPIATLVGGVFALASLAASSEFTILRISGLSPRAALGLLLQLAAALVVTLFLLGEW 120

Query: 121 IEP---KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
           + P   +  + ++            S +          +  + I   N    L  I I  
Sbjct: 121 LAPAAGQLSARLQAGGGSGIGTQLASGVWLRNDSDRSGNQTVNIKAINTRGDLTDIHIYV 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK---DISIMKFKSYTLQTESAN 234
                                   +L +         +     +  +    +      + 
Sbjct: 181 LNAQAQIAAELHAPSGQYEGGGTWMLQNVTRTELPQQTGAALKVIQLPSYRWRTSLSPSV 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              ++L  +  +   L      +     +  E Y  +  K+L      V+  L+++  A 
Sbjct: 241 LGVLLLSPDKMSAIDL-WRYIQHLRANHQAAERYEIQLWKKLFYPFSAVVMLLLALPFAY 299

Query: 295 KRALVRQRKKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                +         I L I+F +    FS +       P     + + LF    + + 
Sbjct: 300 LHTRSKGVSGKVLAGIVLGIAFILLNTLFSSLGILGTWPPAITAAMPMLLFGGLGLIVF 358


>gi|322514886|ref|ZP_08067903.1| inner membrane protein YjgP [Actinobacillus ureae ATCC 25976]
 gi|322119140|gb|EFX91290.1| inner membrane protein YjgP [Actinobacillus ureae ATCC 25976]
          Length = 367

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 121/361 (33%), Gaps = 15/361 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I +S L     ++ + +  Q++  +N   S     +++L + G  +P +  
Sbjct: 2   ILSRYLTKEIFKSQLAILFILLLMFFSQQLITVLNSAVSGKVPTDLVLSLLGLGMPALAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +     L      +E+ ++   G  +  L +   FL+I  +     +   + 
Sbjct: 62  FMLPLSLFVALLLTLGRFYTESEITVMRACGIGQSLLTQVAFFLSIFTTALAVYNVFWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD--SRD 180
           P   +   ++ A+A+    FS L    F      +    +  N  N L  I++     + 
Sbjct: 122 PWAINKQSEMLAEAKSNPRFSALSAGQFMTAGGYVLFIENINNEQNKLNDIYVFQPDQQK 181

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+SG +       Q + L +   +  +  + D  I  F +Y       +  +
Sbjct: 182 KNRPSVVVAESGQLQGLPNGDQILTLENSTRYEGTENTADFRISHFDNYQAYLGYQDVDS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   + + L+           +     ++E   R        +  L+++  +    
Sbjct: 242 NEKLVQRADFNKLMT----------DSSNEAKAELQWRFALIFAVPLMALLAVPMSSVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              +  K+ P  +   I F +           + +   +  L    F I ++ +     K
Sbjct: 292 RQGRFAKVIPAVLLYLIYFLLQSSLKSSGASGKLDATLLMPLVSIAFFILAMVMNFWDTK 351

Query: 358 Y 358
           +
Sbjct: 352 W 352


>gi|160884582|ref|ZP_02065585.1| hypothetical protein BACOVA_02569 [Bacteroides ovatus ATCC 8483]
 gi|260174906|ref|ZP_05761318.1| hypothetical protein BacD2_23825 [Bacteroides sp. D2]
 gi|315923149|ref|ZP_07919389.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156110321|gb|EDO12066.1| hypothetical protein BACOVA_02569 [Bacteroides ovatus ATCC 8483]
 gi|313697024|gb|EFS33859.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 365

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 120/362 (33%), Gaps = 7/362 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  + YI++    +++ +   I+ IA V    ++++ +       + I+ +     IP  
Sbjct: 8   KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWDKIIFEYYMNFIPYF 67

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F   + 
Sbjct: 68  SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALVTFTLSSY 127

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK   T      +       + +           +    +  N   T     +    D
Sbjct: 128 VIPKGSVTRLNFEDRYIKPKKQNSVSNVQLEVDSGVIAYIDNYNNAMKTGNRFSLDKFVD 187

Query: 181 TQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +      A+  + D        ++D  V     + + I+        +  E ++   + 
Sbjct: 188 KKLVSHLTARRITYDTTTVHKWTIHDYMVRELDGLKEKITKGDRIDSIINMEPSDFLIMK 247

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +        L +            ++ +  E+HKR+       I  +I +      +  
Sbjct: 248 NQQEMLTSPELSDYIAKQKRRGFANIKEFEIEYHKRIAMSFASFILTIIGVSL----SSR 303

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKKY 358
           + +  +             +  F  I      N    P + +++   + +     + +K 
Sbjct: 304 KTKGGMGLHLGIGLGLSFSYILFQTITSTFAVNGNVPPAVAVWIPNILYAGIAFFLYQKA 363

Query: 359 TK 360
            K
Sbjct: 364 PK 365


>gi|288803319|ref|ZP_06408752.1| membrane protein [Prevotella melaninogenica D18]
 gi|288334139|gb|EFC72581.1| membrane protein [Prevotella melaninogenica D18]
          Length = 377

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 117/358 (32%), Gaps = 7/358 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTVL 61
             + YI++    +++ + L I+ IA V    + ++  +        I+       +P   
Sbjct: 19  ILDWYIIKKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFVPYYS 78

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            + +P    +      + +  N+E++ +   G S   L++P +   +L++   F   + +
Sbjct: 79  NLFSPLFVFIAVIFFTSKLAGNSEIISMMAAGVSIRRLMRPYMISCVLIAGLTFYLNSFV 138

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      +   +  + +   +  E    F   +         +      G  +V +++ 
Sbjct: 139 IPHGTVIRQNFESLYRNSKKNTSAENVQLFVAKNTTAYIQHYDDQYKRGYGFSLVKTKNK 198

Query: 182 QTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +      A     D     +    +++ ++     + + I     K   L  E  +    
Sbjct: 199 KIVSHMTAMEIQYDTVADTKYHWKVSNWKIRTLKGLKEHIQSGASKDTVLLMEPTDLVYS 258

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        LLN      +     +  Y  EFHKR+       I  +I +      + 
Sbjct: 259 KGQQETFTSPELLNYISKQTSRGSGNVVQYEVEFHKRIAMSFSSFILTIIGLSL---SSR 315

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            R+      + I L++SFG     +       Q+     +       I +I      +
Sbjct: 316 KRKGGMGLYLGIGLALSFGYIMLQTVSATFAIQDDTPPILAAWIPNIIFAIIAYFCYR 373


>gi|206901914|ref|YP_002251684.1| putative permease, YjgP/YjgQ family [Dictyoglomus thermophilum
           H-6-12]
 gi|206741017|gb|ACI20075.1| putative permease, YjgP/YjgQ family [Dictyoglomus thermophilum
           H-6-12]
          Length = 362

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 114/358 (31%), Gaps = 3/358 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K++  YI   I   F +     + +  +  + +  + +     S   +LK+  Y IP++ 
Sbjct: 4   KTYHKYIFSEILGPFFLGIFGFILVMLIQILYEFSDFIIMRRVSFETVLKLLYYKIPSLF 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V P             + R+ E+  + ++G    TL    L  ++ LS  L+     +
Sbjct: 64  VFVIPVSLLFAIIFSFGRLMRDGEIFAMRSSGIYFFTLALAPLLFSVFLSFVLWFFTYSL 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+      +L  K           EN+FF  ++  Y  + K   +  +    +V    +
Sbjct: 124 IPESNYRSNRLIQKYFFLNPAPVKGENIFFHDEEGRYYYVKKIIEDKNIMQNVLVFDTSS 183

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                    +     +R +++L +G VH     +  I   KF+ + +             
Sbjct: 184 SNKYPIIYTAEEAVWNRDSLVLKNGVVHHLGDDAFVIWEGKFEEFKINLPQDFMYIFYRD 243

Query: 242 --ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               +   S L                +Y  E + R+ Q +   IF L+           
Sbjct: 244 RTPQEMPTSEL-RKRIEVYKKAGVSARSYLVENYLRIAQSVAVPIFALMGFSVILLTGRG 302

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            +        I     +G       +      +P+    L        S+ + + K +
Sbjct: 303 GRLWGTAFSIIIAFFYYGFNIIARSLGEYAVFSPFLSAWLPNITLGSLSLGVFIWKVR 360


>gi|237713241|ref|ZP_04543722.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406619|ref|ZP_06083168.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646169|ref|ZP_06723825.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
 gi|294807861|ref|ZP_06766643.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298484045|ref|ZP_07002214.1| membrane protein [Bacteroides sp. D22]
 gi|229446708|gb|EEO52499.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355322|gb|EEZ04413.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638498|gb|EFF56860.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
 gi|294444923|gb|EFG13608.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295084257|emb|CBK65780.1| Predicted permeases [Bacteroides xylanisolvens XB1A]
 gi|298269826|gb|EFI11418.1| membrane protein [Bacteroides sp. D22]
          Length = 365

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 120/362 (33%), Gaps = 7/362 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  + YI++    +++ +   I+ IA V    ++++ +       + I+ +     IP  
Sbjct: 8   KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWDKIIFEYYMNFIPYF 67

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F   + 
Sbjct: 68  SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALTTFTLSSY 127

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK   T      +       + +           +    +  N   T     +    D
Sbjct: 128 VIPKGSVTRLNFEDRYIKPKKQNSVSNVQLEVDSGVIAYIDNYNNAMKTGNRFSLDKFVD 187

Query: 181 TQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +      A+  + D        ++D  V     + + I+        +  E ++   + 
Sbjct: 188 KKLVSHLTARRITYDTATVHKWTIHDYMVRELDGLKEKITKGDRIDSIINMEPSDFLIMK 247

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +        L +            ++ +  E+HKR+       I  +I +      +  
Sbjct: 248 NQQEMLTSPELSDYIEKQKRRGFANIKEFEIEYHKRIAMSFASFILTIIGVSL----SSR 303

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKKY 358
           + +  +             +  F  I      N    P + +++   + +     + +K 
Sbjct: 304 KTKGGMGLHLGIGLGLSFSYILFQTITSTFAVNGNVPPAIAVWIPNILYAGIAFFLYQKA 363

Query: 359 TK 360
            K
Sbjct: 364 PK 365


>gi|293416424|ref|ZP_06659063.1| hypothetical protein ECDG_03180 [Escherichia coli B185]
 gi|291431780|gb|EFF04763.1| hypothetical protein ECDG_03180 [Escherichia coli B185]
          Length = 359

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 124/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQAMQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S +   + +
Sbjct: 181 DLSLESYIYARSATIKDDKMWILHGVNHKKWLNGKETLDTSDNLAWQSAFTSMDLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSLVYWYDR 357


>gi|317493504|ref|ZP_07951925.1| YjgP/YjgQ permease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918447|gb|EFV39785.1| YjgP/YjgQ permease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 359

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 119/354 (33%), Gaps = 1/354 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F  Y++R I   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MKIFSRYLIRNIFIGFAAAAGLLIPLFTTFNLMNELDDVSPGGYHWTQAVVVVLMTLPRS 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + PF   +     L  ++++ EL  I  TG S   +    L   ++L++ L   +  
Sbjct: 61  LIDLGPFIALLGGIVGLGQLSKSMELTAIRTTGFSIFRISIVALCAGLMLTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I         Q+   A      +    N+ +    + ++ +   + +N   G+ I   R 
Sbjct: 121 IASPLEQRALQMKNAAIALDESNDSVGNILWARQGNEFVTVKSLSEDNQPVGVEIFYYRP 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            ++ + Y     +  LD    +L+     R     + +   +   +           + +
Sbjct: 181 DRSLESYIYAQKATILDGNIWMLSGINEKRWVSGKETVETKESLQWKSIFTGMTLKELTM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            ++  ++  L N          +    ++    ++L + +  +   L++I          
Sbjct: 241 PSSTFSIKQL-NQYITYLQNTDQPSIEFKIALWQKLGRAILTLAMILLAIPFTFSVPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                  I + + +   + +     +  +      I  L    F ++   +L+ 
Sbjct: 300 GLGSRLAIGVIVGLFTYISYQIVVNVGLLFSLNAAIVTLTPPAFILAIALVLVY 353


>gi|257466752|ref|ZP_05631063.1| hypothetical protein FgonA2_04880 [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917901|ref|ZP_07914141.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691776|gb|EFS28611.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 358

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 129/359 (35%), Gaps = 6/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+      ++S     FI  +  I+  +  +     S+  + +I  + +P +
Sbjct: 1   MKIIDSYILKECRGPIILSVSIFTFIFLLDIIVAMMENIIVKGISVFDIARILSFYVPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      +   R++E + +++ G     ++KP+L L I    F+   +  
Sbjct: 61  LTQTIPLGLFVGIMITFSKFTRSSEAIAMNSIGMDIRAILKPILTLGIASMFFILFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    ++ L++K         L+E  F    +   + I K   +    GI I ++ +
Sbjct: 121 IIPRSYIKLQYLASKIAYENPVFQLKERTFMNNLEGYSLYIDKVERDKHASGILIFENDE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
                I      +   D  +IIL                   F+   ++ ++  ++    
Sbjct: 181 KTIFPIVLVGHQAYWRD-SSIILERANFISFDEKGVRKLTGSFEDKRVELQAYFSDLQIK 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V +    ++  LL            +   Y+ E +++L      V+  ++ ++ +     
Sbjct: 240 VKEIEMMSIGTLLREMKGKSKEEKLI---YKVEINRKLALPFSSVMLSVLGVLLSIGHQR 296

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             +R  I    +++     +      + +  +        L   L    +  L ++KK+
Sbjct: 297 SGKRAGILVGILTIFFYICLLNVGIVLANVGKIPILLGVWLPNVLLAALTYRLYIVKKR 355


>gi|33862844|ref|NP_894404.1| putative permease [Prochlorococcus marinus str. MIT 9313]
 gi|33634760|emb|CAE20746.1| possible permease [Prochlorococcus marinus str. MIT 9313]
          Length = 403

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/376 (12%), Positives = 131/376 (34%), Gaps = 22/376 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  +    L +      ++  +  +   +  +      L+  L++    +P  L
Sbjct: 32  LLDRWLLGELIPVLLFAIAAFTVVSVSVGVMFDLVRKIVEFGLPLHFALQVFSLKLPFFL 91

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T    + ++ N+E   + + G S   ++ P L LA+L++   FI  ++I
Sbjct: 92  VISFPMATLLATLLAYSRLSSNSEFTALRSLGVSTRRIVAPALALALLMTGLTFIFNDVI 151

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-------------KISKYNPNN 168
            P+  S+ +    +A      +   +++ +     +                 ++     
Sbjct: 152 VPRTNSSAEVTIKRALGKAIATEKGKHVVYSRFGTITGAEAEDWNQGLSQLFYAREFLKG 211

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            ++ + ++D       ++  A+    +         +G +   +P     S ++F  Y  
Sbjct: 212 EMEDVTVLDLSRLGFTQMLKAERAIWNEQEAMWEFFNGNILTLTPRGSTTS-VEFDRYLY 270

Query: 229 QTESANSSTIVLKANDQNLS---FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
              S       L  +  N++    +   +        +     +    ++ T  +  ++F
Sbjct: 271 PLTSGPIRVAKLPKDANNMTVAQAMEAASIYTDAGNRKEARRLKVRIQEKFTFPMSCLVF 330

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           GLI      K     +  +     ISL +    ++  S+    +       P+L  ++  
Sbjct: 331 GLIGSSLGAKP--NSRTSRTQGFGISLLLILA-YYTLSFSFSSLGVTGTLTPMLAAWIPV 387

Query: 346 ISSI-FLLMIKKKYTK 360
             S+    ++ ++ ++
Sbjct: 388 FISLAGGGLLLRQASR 403


>gi|258405421|ref|YP_003198163.1| permease YjgP/YjgQ family protein [Desulfohalobium retbaense DSM
           5692]
 gi|257797648|gb|ACV68585.1| permease YjgP/YjgQ family protein [Desulfohalobium retbaense DSM
           5692]
          Length = 358

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 101/344 (29%), Gaps = 8/344 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M +   Y+LR      L+S    + I  +I I  R++    +   +   +      IP +
Sbjct: 1   MTTLHRYLLRQNLYYLLLSLGAGIGIYLLIDIFDRLDDFVGAQAGVEATVLYFAAKIPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P  F +     L+ M R  EL  ++  G     L    L  A+  S         
Sbjct: 61  VSQVLPAVFLLSLLAQLSIMRRQQELTALEAGGIPLSRLAVFFLVYAVFWSGLQLGFSEG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +   + +  +       S       +   +   + + +  P         V   D
Sbjct: 121 LGVVGQRKSEAIWEQDVHGHAPSQRTLRDVWFKSEHFVVHMHRVTPRQKTGRKITVYVMD 180

Query: 181 TQTHKIYYAQSG-SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
               +I              + +L++    +    +                   +    
Sbjct: 181 EDFSRIRTIHRAERFQQQTDSWVLSEVTSLKPHAFTTSAQDRLPLPLQQDLADFLAVDPK 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +    +L  L +   +        +E   + +H +L      V+  L+++         
Sbjct: 241 AEPESLSLWQLGHL-ISELRQSGSNVERLATTWHMKLAYGFSLVVMALLALGIVSAS--- 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
                   I I L++ F V++    +   + +     P +  +L
Sbjct: 297 --GNIYVNIPIGLTVIF-VYYALFVLGGTLGEKGIVSPWIGGWL 337


>gi|297184152|gb|ADI20271.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 374

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 51/373 (13%), Positives = 115/373 (30%), Gaps = 23/373 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YIL     SF ++ + I+ IA V  I ++++   +      I+       I   
Sbjct: 1   MNKLDRYILLKFIGSFFLTMVLILSIAVVFDISEKLDDFQNGASMNEIIFDYYINFIAFY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +     + T    + M  N+E++ I  +GTS   L++P    A ++        ++
Sbjct: 61  GNLFSALILFISTIWFTSRMASNSEIVAILTSGTSFRRLLRPYFIGASIICALSLTLNHL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+          K    +     ++     L        +      +   +      D
Sbjct: 121 LVPQTNIKRIAFEEKYVTGVNRPISQKMHRQVLPGHYVYFETFSGVRESGYQMTYEVFED 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS-PISKDISIMKFKSYTLQTESANSSTIV 239
            Q      A    +D       L++  +        + IS  +     L   S   +  +
Sbjct: 181 HQLKSKLSADFVRLDTATGRWRLDNFRLRTLDEKGGEQISFGRRMDTALAFTSEQIAPKL 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                 N   L            E + +Y+ E  +R +  +   +F L+++  A   +  
Sbjct: 241 NSIATMNSKELSRFIAQEELTGNENIASYQMEMQRRTSYPVSSYVFVLLAVGLA---SQK 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP------------------ILYL 341
           ++      I I L ++  ++  F  +     +                         +++
Sbjct: 298 KRGGLGINIAIGLVLT-AIYIFFMQLSETFAKTGLLSSEGLLGGPLEWIGIQPAEFAVWI 356

Query: 342 FLFCISSIFLLMI 354
                + I L   
Sbjct: 357 PNIVFAIIALWRY 369


>gi|212212730|ref|YP_002303666.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuG_Q212]
 gi|212011140|gb|ACJ18521.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuG_Q212]
          Length = 355

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 112/358 (31%), Gaps = 4/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI   I  +  +  L ++ I   ++ + +++ + S    L          +P+ 
Sbjct: 1   MPLLNRYIRNAIITATALVMLVLLGIEMFMEFIGQLSQIGSVHYGLGQAFLYVLTQLPSD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  +  ++EL+++   G S   +   V+  A+L+ + +     +
Sbjct: 61  LYQLFPMAGFLGCLIGLGRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVVMTFIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+  ++ ++    A           +++           S    N   +      +  
Sbjct: 121 IAPQLEASGEETKLTALSKAVGYKALGDVWLHGAQSFIHIGSVDAKNKISEVSQFFINNK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q     YA  G         IL + +  + +P       +     T+     +      
Sbjct: 181 HQLLSAVYAPKGEYVKG--HWILYNVKQTQFTPNRTTEKKIAKFPLTIVFNPDHLQQGRK 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             + Q++  L +               Y   F +R  Q L  V+   + +          
Sbjct: 239 MVDRQSIVGLYH-TIRYRQQAGLQTSRYVFAFWQRFIQPLTTVVMICLGVPFIFGSLRQA 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSY-IIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    I +  +F +   F        +  P +  ++   LF +  + LL   ++
Sbjct: 298 SMGWRILTGIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVLFAVGCVILLRYSRR 355


>gi|242279362|ref|YP_002991491.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
           2638]
 gi|242122256|gb|ACS79952.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
           2638]
          Length = 386

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 119/362 (32%), Gaps = 10/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK     I + +   F +S    + +  + ++LQ  +L    +     + K+  YL P  
Sbjct: 1   MKLLHRNIFKELISIFTLSISGFMGLILIGRLLQFRDLFMGQSLGALEMAKLFMYLCPFF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+TP    +        MN + E+  + + G S   L+   +   +L +   F     
Sbjct: 61  LLMLTPIATMLSIFLTFLRMNADNEITALKSGGLSLYRLLPAPIIFCLLCTGADFYFSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
                    +    +     +   ++  +F +    L       +  +  ++ +F+ D+ 
Sbjct: 121 GLSWGTENFRNALMEFARTQSQLAIQPGVFNKNFPGLVFYADGVDEKSGIMRSVFVRDNT 180

Query: 180 DTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTES--A 233
                    A  G I  D +     I L +G+++++      +   K     +   +   
Sbjct: 181 RKGMTATIVAPLGEIRTDPKMGRLLIHLENGKIYQQEKDQLSVLKFKNYDVRIPLANILK 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR---SEFHKRLTQWLFPVIFGLISI 290
                 L+  + +   L+  +             ++    E  KRL   +  ++ G+ ++
Sbjct: 241 GYDVDELRPKEMSWKKLVRISRAGDRAGDIDPGFFKKVQVEVQKRLALPVACLVLGMFAV 300

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             A     ++Q+  +        + + +              P     L    F I S+ 
Sbjct: 301 PIACIFRGLKQQYGLIISMGLFLVYYTMLSLGVTFGESGVLTPVIGLWLPNITFAIISVV 360

Query: 351 LL 352
           LL
Sbjct: 361 LL 362


>gi|323345623|ref|ZP_08085846.1| hypothetical protein HMPREF0663_12382 [Prevotella oralis ATCC
           33269]
 gi|323093737|gb|EFZ36315.1| hypothetical protein HMPREF0663_12382 [Prevotella oralis ATCC
           33269]
          Length = 412

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 121/360 (33%), Gaps = 8/360 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  + YI++    +++ S L I+ IA V    + ++  +     L  I+       IP  
Sbjct: 53  KRLDRYIIKKFIGTYIFSILLIIAIAIVFDFNENLSKFTQYHAPLHAIIFDYYANFIPYY 112

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ +   G S   L++P +   +L+S   F     
Sbjct: 113 SNLFSPLFVFIAVIFFTSKLAGNSEIISMLAAGVSFRRLMRPYMISCVLISALSFYLSAY 172

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   +  +     +  +          +       + +    G  +   ++
Sbjct: 173 VIPHGTVIRQNFESLYRNNRKLTSADNVQLQVGTGIIAYIQHYDDRSKRGYGFSLDKFQE 232

Query: 181 TQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +      A   S   I   +    + + ++ +   + + I+    K   +Q E  +   
Sbjct: 233 KKLISHMTATEISYDTISESKYHWTVRNWKIRQLKGLREHITSGGEKDTLIQMEPTDLVY 292

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +        L +      +     +  Y+ E+HKR+       I  +I +      +
Sbjct: 293 SKGQQETFTSPQLKDYISKQIDRGSGNVVQYQVEYHKRIAASFASFILTIIGVSL---SS 349

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R+      + I + +SFG +     +      N    P+L  ++  I   F+     +
Sbjct: 350 RKRKGGMGLYLGIGMGLSFG-YILLQTVSSTFAINAGAPPMLAAWMPNILFAFIAYFCYR 408


>gi|257452883|ref|ZP_05618182.1| hypothetical protein F3_07439 [Fusobacterium sp. 3_1_5R]
 gi|317059425|ref|ZP_07923910.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313685101|gb|EFS21936.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 358

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 129/359 (35%), Gaps = 6/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+      ++S     FI  +  I+  +  +     S+  + +I  + +P +
Sbjct: 1   MKIIDSYILKECRGPIILSVSIFTFIFLLDIIVAMMENIIVKGISVFDVARILSFYVPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      +   R++E + +++ G     ++KP+L L I    F+   +  
Sbjct: 61  LTQTIPLGLFVGIMITFSKFTRSSEAIAMNSIGMDIRAILKPILTLGIASMFFILFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    ++ L++K         L+E  F    +   + I K   +    GI I ++ +
Sbjct: 121 IIPRSYIKLQYLASKIAYENPVFQLKERTFMNNLEGYSLYIDKVGRDKHASGILIFENDE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
                I      +   D  +IIL                   F+   ++ ++  ++    
Sbjct: 181 KTIFPIVLVGHQAYWRD-SSIILERANFISFDEKGVRKLTGSFEDKRVELQAYFSDLQIK 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V +    ++  LL            +   Y+ E +++L      V+  ++ ++ +     
Sbjct: 240 VKEIEMMSIGTLLREMKGKSKEEKLI---YKVEINRKLALPFSSVMLSVLGVLLSIGHQR 296

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             +R  I    +++     +      + +  +        L   L    +  L ++KK+
Sbjct: 297 SGKRAGILVGILTIFFYICLLNVGIVLANVGKIPILLGVWLPNVLLAALTYRLYIVKKR 355


>gi|294785396|ref|ZP_06750684.1| permease, YjgP/YjgQ family [Fusobacterium sp. 3_1_27]
 gi|294487110|gb|EFG34472.1| permease, YjgP/YjgQ family [Fusobacterium sp. 3_1_27]
          Length = 363

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 117/362 (32%), Gaps = 11/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++YI +   + FLM+ +  + +  + Q  + I  ++    +   +      L+P + 
Sbjct: 3   KKMDIYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLAGGEIFDYIINLLPKMF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     ++ M  N E++ +  +G   + +++  L +A ++S+ +F   N I
Sbjct: 63  VETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFINNSI 122

Query: 122 EPKCRSTIKQLSA-----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
             K  + I            +L  T               L  KI++         +   
Sbjct: 123 YTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLYLMGKINRETGVAENIEVVKF 182

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +++ ++  +I  A+S   D D    I ++  ++                      S    
Sbjct: 183 ETQISKPKEIITAKSAKFDTDEDKWIFSNVNIYNVDTKETVTKTEYKSDLYKDDPSNFIR 242

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                     +  L        N   E    Y +E  KR +      I   I + A    
Sbjct: 243 ASAEDPRMLTIKELKKTIKEQKNI-GEDTRIYLAELAKRYSFPFASFIVAFIGLSA--SS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
             VR  +    + I +   +G +   S     +  N    P +  ++       I +  +
Sbjct: 300 KYVRGGRTTMNLVICVVAGYGYYLV-SGAFEAMSLNGIVNPFVASWIPNILYLIIGIYFM 358

Query: 355 KK 356
            +
Sbjct: 359 NR 360


>gi|294782105|ref|ZP_06747431.1| permease, YjgP/YjgQ family [Fusobacterium sp. 1_1_41FAA]
 gi|294480746|gb|EFG28521.1| permease, YjgP/YjgQ family [Fusobacterium sp. 1_1_41FAA]
          Length = 363

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 119/362 (32%), Gaps = 11/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++YI +   + FLM+ +  + +  + Q  + I  ++        +      L+P + 
Sbjct: 3   KKLDIYISKYFIKYFLMNIIGFMGVFLLAQTFKIIKYINQGKLEGGEIFDYIVNLLPKMF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     ++ M  N E++ +  +G   + +++  L +A ++S+F+F   N I
Sbjct: 63  VETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFIISLFVFFVNNSI 122

Query: 122 EPKCRSTIKQLSA-----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
             K  + I            +L  T               L   I++         I I 
Sbjct: 123 YTKSLAKINFYRKGEIDASLRLPKTKENAFFINNTDGYIYLMGNINRETGEAEKIEIVIY 182

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D+  ++  +I  AQSG  D D +  +L+   ++          +        +  +    
Sbjct: 183 DTEISKPVEIITAQSGKYDKDNKKWLLSGVNIYNVETKKTITKVAYDSDRFGEDPNNFIR 242

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                     +  L        N   E    Y +E  KR +      I   I +      
Sbjct: 243 AAAEDPRMLTIKELKKTIKEQKNI-GEDTRIYLAELAKRYSFPFASFIVAFIGLSV--SS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
             VR  +    + I +   +G +   S     +  N    P +  ++       I +  +
Sbjct: 300 KYVRGGRTTLNLVICVVAGYGYYLV-SGAFEAMSLNGILNPFISSWIPNILYFIIGMYFM 358

Query: 355 KK 356
            +
Sbjct: 359 NR 360


>gi|293449327|ref|ZP_06663748.1| hypothetical protein ECCG_02358 [Escherichia coli B088]
 gi|291322417|gb|EFE61846.1| hypothetical protein ECCG_02358 [Escherichia coli B088]
          Length = 359

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 126/360 (35%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ V+         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVNPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + + I+   ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   N      +    YR    ++L   +  +   L+++          
Sbjct: 241 PGNSFSVRQL-NHYINYLQETGQPSSEYRLALWEKLGHPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L++   + +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALILVYLFDR 357


>gi|191169423|ref|ZP_03031162.1| putative permease, YjgP/YjgQ family [Escherichia coli B7A]
 gi|309794090|ref|ZP_07688515.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|190900537|gb|EDV60347.1| putative permease, YjgP/YjgQ family [Escherichia coli B7A]
 gi|308122497|gb|EFO59759.1| conserved hypothetical protein [Escherichia coli MS 145-7]
          Length = 359

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 125/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I + G S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + + I+   ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   N      +    YR    ++L   +  +   L+++          
Sbjct: 241 PGNSFSVRQL-NHYINYLQETGQPSSEYRLALWEKLGHPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L++   + +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALILVYLFDR 357


>gi|94266928|ref|ZP_01290581.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
 gi|93452380|gb|EAT02999.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
          Length = 359

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/342 (13%), Positives = 106/342 (30%), Gaps = 6/342 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y++   GR+       ++ I  ++   +R++    +       ++     IP +
Sbjct: 1   MKLLDRYLITSFGRNLATVLGGLLAIYLLVDFFERVDSFLDAGLGTGGAVRYLLLKIPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +     L  +NR  EL+ +   G S   +I+P+L  A   ++    S   
Sbjct: 61  IEQLLPVALLLAGIITLGLLNRRHELMALQAAGLSTRRIIRPLLLAAFACTLLGMASSQW 120

Query: 121 IEPKCRST-IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P   S   +    + +         +   +    +          +      F   + 
Sbjct: 121 LLPPTMSELNRLWHQEVRQQENRGIERQGRIYYRGQEGIYSFRPAADSENRLADFSYLTW 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--T 237
           D          +     D +  +L +G++  K+    D  +  F+   L      +    
Sbjct: 181 DRDYRLAQLIFATRASWDGRKWLLEEGQLKEKANGDDDFVVDYFERRQLALPEEPADFFI 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +++ LS L +      +         R     +++     +   LI I      +
Sbjct: 241 PPYALSERALSTLFS--QATASADTPQRRQARLAIQHKISYIFLGLPLLLIGIPLLLAMS 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
             R  + +     + S    + WG       +       P +
Sbjct: 299 RGR-GRDLALAIPAASFLAFITWGLWSFGQSLAAAGQLPPFI 339


>gi|300718280|ref|YP_003743083.1| permease [Erwinia billingiae Eb661]
 gi|299064116|emb|CAX61236.1| Predicted permease [Erwinia billingiae Eb661]
          Length = 361

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 106/336 (31%), Gaps = 2/336 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R I   F  +   ++ +     ++  ++ V+         L +    +P  
Sbjct: 1   MTIFSRYLMRNIFIGFAAAAGLLIPLFTTFNLINELDDVAPGGYRWTQALLVVVMTLPRS 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + PF   +     L  ++++ EL  I   G S   + + +    +++++ L   +  
Sbjct: 61  LVDLAPFIALLGGIVGLGQLSKSLELTAIRTAGFSISRIARVMFCAGLVMTLTLGAVDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+   A           N  +    D ++ +   +  N   GI I   + 
Sbjct: 121 VAAPLQQRALQIKNVAMAKAESDSDAGNALWARSQDDFVTVQSLDNRNQPVGIEIFSWQP 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             T K Y     +    +    L++    R     + ++ +    +       +   + L
Sbjct: 181 DLTLKSYIFAQSATIAGKGMWTLHNVTEKRWDKQQETVNNLPEMQWHSLFSGEDLKRLTL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            A   +   L +      +   +    Y S   ++  + +  +   L+++          
Sbjct: 241 PAESFSARQLAD-YIVYLHKTGQPSLEYESALWQKAGRPILILAMILLAVPFTFSTPRAP 299

Query: 301 QRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYY 335
                  + + + +    V+     +      N   
Sbjct: 300 GLGSRLALGVIVGLVTWIVYQIVLNLGILFSINAQL 335


>gi|254446878|ref|ZP_05060353.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
           DG1235]
 gi|198256303|gb|EDY80612.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
           DG1235]
          Length = 370

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/369 (12%), Positives = 117/369 (31%), Gaps = 17/369 (4%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+     ++F +    +  +  + +I      + S   +   +L     L P+ L + 
Sbjct: 6   DRYVFTEWLKAFALVLSSMFGLLILFEIQDSFTDLVSYDATGGQILFYYAILAPSFLTVT 65

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  ++R  E + +   G S   + + +   ++L+S  L+   + + P 
Sbjct: 66  LPASILVSILYALGQLHRANEFVALRAAGMSVFRVTRSIWLASLLISGGLWYLNSSLIPW 125

Query: 125 CRSTIKQLSAKAQLALTFSYLE----------ENLFFRLDDDLYIKISKYNPNNTLQGIF 174
                 QL    +       L+               R +   +I       +       
Sbjct: 126 SVEQSNQLITTLRQDSEAKILDSDEIGVVEGLAFDNRRENRMWFINRYSEYKSQAFGISV 185

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
            +   + +  +   A+ G  D D     L DG      P +       F+    +  + +
Sbjct: 186 SIMDEERREVRRVMARYGYFDEDLGYWTLFDGRERLNDPDTGRERWPPFERLDAKDLTDD 245

Query: 235 SSTI---VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
            + +     +  D +   L     +        +  Y       +      +I   I+I 
Sbjct: 246 PTLMLLFGKRPKDLSFFQLRRITDSFTQEDNPNVLAYEVRLQALMASAASCLIVAGIAIP 305

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            A       +      +  S+ + F VF+ F+ +++   +     P +  ++  ++ I L
Sbjct: 306 FAVSGV---RTNPAVGVTKSIGL-FFVFYIFTSVLNAFGREGALSPEMAAWIPMVAMILL 361

Query: 352 LMIKKKYTK 360
             +  +  +
Sbjct: 362 AYVLMRRVR 370


>gi|99080789|ref|YP_612943.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
 gi|99037069|gb|ABF63681.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
          Length = 368

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 116/361 (32%), Gaps = 13/361 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +LY  R   + F++    ++ +  +I + ++     +       LL+++    P    
Sbjct: 2   ILDLYYARRFLQWFMVIAAVLMSLVMLIDLSEQFRRFDAQDLRFGQLLELTLLNAPAAFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    + T  +   M R++EL++    G S I  + P + +A++L      + N I 
Sbjct: 62  EFLPLIMILTTIVLFVGMARSSELVVTRAIGRSGIRALVPPVVVALVLGGLAVSTLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFS---------YLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
               +  + LS   +     +         +L +                   N  L  +
Sbjct: 122 AATTNRFETLSESYRQTGGPAAVSLSGEGLWLRQGGQNGQSVIHAANYRGDAENLYLYDV 181

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
            I+              + +       ++ +         ++ + S  ++    L T   
Sbjct: 182 SILTYAPDGGPTRRTVAAEARLEGDDWVLRDAKVWQLILGVNPERSAKRYDELRLPTTLT 241

Query: 234 NSSTIVLKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           N          + +S + L     + +        ++      L + LF V   L+    
Sbjct: 242 NERIRDTLGYAEGISIYDLPQTIQSLSEAGFSTTRFQVWLQVELARPLFLVAMVLVGAAF 301

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                  R       +  S+ + F +++  ++    + +N     +L  +   ++SI L 
Sbjct: 302 --TMRHTRLGGTGVAVLTSVLLGFALYFVHNFA-RILGENGQIPILLAAWAPPVASILLT 358

Query: 353 M 353
           M
Sbjct: 359 M 359


>gi|153209377|ref|ZP_01947372.1| putative permease [Coxiella burnetii 'MSU Goat Q177']
 gi|165919052|ref|ZP_02219138.1| putative permease [Coxiella burnetii RSA 334]
 gi|212218294|ref|YP_002305081.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuK_Q154]
 gi|120575377|gb|EAX32001.1| putative permease [Coxiella burnetii 'MSU Goat Q177']
 gi|165917247|gb|EDR35851.1| putative permease [Coxiella burnetii RSA 334]
 gi|212012556|gb|ACJ19936.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuK_Q154]
          Length = 355

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 112/358 (31%), Gaps = 4/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI   I  +  +  L ++ I   ++ + +++ + S    L          +P+ 
Sbjct: 1   MPLLNRYIRNAIITATALVMLVLLGIEMFMEFIGQLSQIGSVHYGLGQAFLYVLTQLPSD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  +  ++EL+++   G S   +   V+  A+L+ + +     +
Sbjct: 61  LYQLFPMAGFLGCLIGLGRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVAMTFIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+  ++ ++    A           +++           S    N   +      +  
Sbjct: 121 IAPQLGASGEETKLTALSKAVGYKALGDVWLHGAQSFIHIGSVDAKNKISEVSQFFINNK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q     YA  G         IL + +  + +P       +     T+     +      
Sbjct: 181 HQLLSAVYAPKGEYVKG--HWILYNVKQTQFTPNRTTEKKIAKFPLTIVFNPDHLQQGRK 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             + Q++  L +               Y   F +R  Q L  V+   + +          
Sbjct: 239 MVDRQSIVGLYH-TIRYRQQAGLQTSRYVFAFWQRFIQPLTTVVMICLGVPFIFGSLRQA 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSY-IIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    I +  +F +   F        +  P +  ++   LF +  + LL   ++
Sbjct: 298 SMGLRILTGIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVLFAVGCVILLRYSRR 355


>gi|114331101|ref|YP_747323.1| permease YjgP/YjgQ family protein [Nitrosomonas eutropha C91]
 gi|114308115|gb|ABI59358.1| permease YjgP/YjgQ family protein [Nitrosomonas eutropha C91]
          Length = 352

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/353 (11%), Positives = 113/353 (32%), Gaps = 2/353 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI   +    +++ + ++ +     +L +++ V   T +       +  L+P  
Sbjct: 1   MKICYRYIALQVLTGMIIATVVLLPLFSFFDLLDQLDDVGKGTYTTRDAFLYTAMLMPRR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + PF   + T   L  +  + EL+ +   G S + +    + +   L       E +
Sbjct: 61  FIQIAPFIALLGTVGALGGLAVSLELVAMRVAGFSPLMISLAPIGIGGGLITSTIALEYL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ +     +     L  +    +    +  ++   ++I +         I ++    
Sbjct: 121 VAPQFQQQ-AIVLRAVALEQSAELGKGLGIWTRNEQNILRIGEMLHKGRAIDIEVMHFDK 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                 +     +   D+    L+D  V   +P       +    +       + +T+  
Sbjct: 180 QGLMTAHIHAQYADIFDKSMWKLHDVTVRMFAPDRIFSRKVHALQWHSFLGPEDIATLTK 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                    LL+ +        +  + Y     +++   +  +   LI+I          
Sbjct: 240 PPESLTPLELLH-HAEFLKMTGQKADAYVMALWRKVGSVVMTIAMILIAIPFIFGSVREG 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              K+    +     + +    + I    + NP  + I    +  + + + L+
Sbjct: 299 LGGKLVLASLMGISIYLLDQIIANIGLVFQLNPIVVSIAPGSILIVIAAYWLL 351


>gi|325578600|ref|ZP_08148700.1| inner membrane protein YjgP [Haemophilus parainfluenzae ATCC 33392]
 gi|325159836|gb|EGC71966.1| inner membrane protein YjgP [Haemophilus parainfluenzae ATCC 33392]
          Length = 363

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 122/357 (34%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + +S +     ++ I +  Q+++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILTRYLTKEVFKSQIAILFILLLIFFSQQLVRVLGSAANGKVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L++  L L++  +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVRVALILSLFTAGLAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   T   L    F    ++ ++        N +  +++   +   
Sbjct: 122 PWAIQKQAAIVEDAKANPTMGALTSGQFMSTSNNNFVLFIDKINGNQISDVYLFQMKAKG 181

Query: 183 --THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G    +    Q + L +      + +  D  I  F  Y        ++T
Sbjct: 182 QTKPSVVTAEKGELKALPNGDQVLNLQNTLRVEGTSVLPDFRITHFDDYQAYLGHQETNT 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A + +   LL           +     ++E H R+T  L   +  LI++       
Sbjct: 242 ESDEAAELSFEQLL----------KDKSSAAKAELHWRITLILAVPLMALIAV---PMSK 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLM 353
           +  ++ +   I  +L +    F   S               ++ L       + +++
Sbjct: 289 VNPRQGRFAKILPALLLYLIYFLLQSSFKSAGGAGKLDAGLLMPLVNIAFLILGIVL 345


>gi|260582802|ref|ZP_05850588.1| permease [Haemophilus influenzae NT127]
 gi|260094128|gb|EEW78030.1| permease [Haemophilus influenzae NT127]
 gi|309972900|gb|ADO96101.1| Lipopolysaccharide export permease, LptF [Haemophilus influenzae
           R2846]
          Length = 367

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 129/354 (36%), Gaps = 15/354 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   T   L    F   +++  +       +N ++ +++      +
Sbjct: 122 PWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQK 181

Query: 183 --THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G    +    Q + L + +    +    D  I  F  Y       ++  
Sbjct: 182 QTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYQAYLGYQSAEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +  +  LS L++ + ++           ++E H R+T  L   +  LI++  +    
Sbjct: 242 TNDEVAELTLSQLIDLDSSSA----------KAELHWRITLILAVPLMALIAVPLSRVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              +  KI P  +   I F +   F       +     +  L    F + ++ L
Sbjct: 292 RQGRFAKILPALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVL 345


>gi|223938399|ref|ZP_03630293.1| permease YjgP/YjgQ family protein [bacterium Ellin514]
 gi|223892968|gb|EEF59435.1| permease YjgP/YjgQ family protein [bacterium Ellin514]
          Length = 383

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 137/382 (35%), Gaps = 30/382 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPT 59
           MK    Y++R +  + +M+     F+  +   L + + L+ +   +L  +++  G LIP 
Sbjct: 1   MKILHTYLIRQVLATLMMTVAVFTFVLLLGNGLKEILVLIINRQATLGGVIQAFGLLIPF 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           VL    P         V    + + EL  + ++G S ++LI P+L L+++L         
Sbjct: 61  VLVFALPMGMLTAALLVFGRFSADQELTAVKSSGVSLLSLITPILGLSLVLCGVSAAINM 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I P+CR     L  +    +  + L +++F +      I +   +  N           
Sbjct: 121 EIAPRCRIAYLDLRDEMVGKVAGAALPDSIFVKDFPGFLIYVGASDGKNLTDIHICQLDE 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +   +  A  G +        L   +       S   +     S  L +   NS++  
Sbjct: 181 NDKVKTMTDAPKGLLQRSGNQTSLELFDARIFDVQSGSWAYPGIVSQDLSSIKTNSTSKN 240

Query: 240 LKANDQNLSFLLNPNP-----------------------NNPNYRPELLETYRSEFHKRL 276
           +   D     L N                             N + ++    R + H+++
Sbjct: 241 IHIGDMTFRQLQNELQVVENEFAVPEKAGSKAELQQRRDILANKKKDVTMPIRVQMHRQV 300

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                   F LI I          +R+    I +SL++   V++ F  +    E  PY  
Sbjct: 301 AFSFACFGFTLIGIPLGI---QAHRRETNVGIAMSLALV-LVYYSFIILGQSFEGRPYLA 356

Query: 337 P--ILYLFLFCISSIFLLMIKK 356
           P  IL++  F   +I  +M+ +
Sbjct: 357 PHLILWIPNFLFQAIGAVMLWR 378


>gi|83644757|ref|YP_433192.1| permease [Hahella chejuensis KCTC 2396]
 gi|83632800|gb|ABC28767.1| predicted Permease [Hahella chejuensis KCTC 2396]
          Length = 353

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 120/357 (33%), Gaps = 5/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI+  +  + L+  L ++ +  V   +  ++ + +  ++L   +K   + +P  
Sbjct: 1   MRRIDRYIVATVASAMLLVLLVVLSLDLVFAFIAEMDELKNDYQTL-QAMKYIIFTVPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L  +  N+EL +I   G S + ++   +  A+ + +   +    
Sbjct: 60  IYDYLPLAAFIGCLVGLGVLANNSELTVIRAAGVSVVRVVWSTMKPALAVVVVGILVGEF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+    I Q     +     +       +R + ++++  +   P   L G+ + +  D
Sbjct: 120 VAPQT-ERIAQTQKALEQGAAENVASSAGMWRREGNVFMHFNAVEPKGVLHGVSLFEFND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +          +I       +L D E          +       + +    +    +++
Sbjct: 179 ERRMVRSTFAKRAIYQGDH-WLLQDIERTEIKDDGSHVQTFDSLRWNVSLSPSILEVLII 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++  L     N    +     +Y   F K++ Q +   +  L++I          
Sbjct: 238 KPEYLSIKGLY-TYANYQEEQGLDANSYLMAFWKKVLQPVATSVLVLVAISFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKI-EQNPYYIPILYLFLFCISSIFLLMIKK 356
                    I + + F            +   NP    +  + +  +  + LL   +
Sbjct: 297 TMGFRVFCGIIIGLLFKYMQDLLGPASLVFGFNPVIATLAPICICALLGVVLLRRVR 353


>gi|237718555|ref|ZP_04549036.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293373071|ref|ZP_06619439.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
 gi|299145713|ref|ZP_07038781.1| putative membrane protein [Bacteroides sp. 3_1_23]
 gi|229452015|gb|EEO57806.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292631957|gb|EFF50567.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
 gi|298516204|gb|EFI40085.1| putative membrane protein [Bacteroides sp. 3_1_23]
          Length = 365

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 120/362 (33%), Gaps = 7/362 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  + YI++    +++ +   I+ IA V    ++++ +       + I+ +     IP  
Sbjct: 8   KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWDKIIFEYYMNFIPYF 67

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F   + 
Sbjct: 68  SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALVTFTLSSY 127

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK   T      +       + +           +    +  N   T     +    D
Sbjct: 128 VIPKGSVTRLNFEDRYIKPKKQNSVSNVQLEVDSGVIAYIDNYNNAMKTGNRFSLDKFVD 187

Query: 181 TQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +      A+  + D        ++D  V     + + I+        +  E ++   + 
Sbjct: 188 KKLVSHLTARRITYDTTTVHKWTIHDYMVRELDGLKEKITKGDRIDSIINMEPSDFLIMK 247

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +        L +            ++ +  E+HKR+       I  +I +      +  
Sbjct: 248 NQQEMLTSPELSDYIVKQKRRGFANIKEFEIEYHKRIAMSFASFILTIIGVSL----SSR 303

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKKY 358
           + +  +             +  F  I      N    P + +++   + +     + +K 
Sbjct: 304 KTKGGMGLHLGIGLGLSFSYILFQTITSTFAVNGNVPPAVAVWIPNILYAGIAFFLYQKA 363

Query: 359 TK 360
            K
Sbjct: 364 PK 365


>gi|94495767|ref|ZP_01302347.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
 gi|94425155|gb|EAT10176.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
          Length = 366

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 121/358 (33%), Gaps = 7/358 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
           +   LY+ R            +V +   + +L     + +    S   L    G   P +
Sbjct: 9   RQISLYMARLFLTRTFAVLAMLVVVLQTLDLLGNSGDILAYPGNSDAQLWHYVGLRAPQI 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   + T  +L ++N+N+E++ +   G S   ++ P++  A+ +SI  F+    
Sbjct: 69  IATFLPFSVLLGTLVMLATLNQNSEIISMKAAGLSAHQILAPLVLAALGVSIISFVFNER 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK---ISKYNPNNTLQGIFIVD 177
           I  +  + +    A     +      ++  +  D +  +    ++       L+ + I +
Sbjct: 129 IVVRSTAALSAWEAVDYGPVPPDSGVKSNPWVRDGNNLVNAAIVAGRGTAVQLRQVEIYN 188

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             + +   I  A  G  D+  ++ +L      +       +S +    +         + 
Sbjct: 189 RINNRLTTIVQAPKGHYDVASKSWVLEGA--RQFDVARGTVSNIGTVRFGRDIRPDQFTL 246

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +  +      L      +        +        +L+  L  ++  ++  VAA   A
Sbjct: 247 ARVDPDALTFHEL-EAAIGDLRDAGRPTKELEGSLWHKLSGPLSALLMPILGSVAAFGLA 305

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              Q      + ++L  ++ V   FS  +  +   P  +     F   +     ++ +
Sbjct: 306 RSGQLFMRAVLGMALGFAYFVADNFSLAMGNLGAYPPVLAAWAPFFLFLLVGETVLFR 363


>gi|293412357|ref|ZP_06655080.1| predicted protein [Escherichia coli B354]
 gi|291469128|gb|EFF11619.1| predicted protein [Escherichia coli B354]
          Length = 359

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 123/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S +   + +
Sbjct: 181 DLSLESYIFARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + +      +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIAGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 357


>gi|255320990|ref|ZP_05362163.1| permease YjgP/YjgQ family protein [Acinetobacter radioresistens
           SK82]
 gi|262379920|ref|ZP_06073075.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255301954|gb|EET81198.1| permease YjgP/YjgQ family protein [Acinetobacter radioresistens
           SK82]
 gi|262298114|gb|EEY86028.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 356

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 113/356 (31%), Gaps = 4/356 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    ++ +    + L + + +  +  +   L  +  +     +    L    +  P  +
Sbjct: 5   RIVAKHVTKTTALAMLGATVVLSILQVLFTYLGELGNLKE-GYNAWQALLYVLWSAPRYI 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L ++  N+EL+I+   G S   ++  V+  A+LL I  F     +
Sbjct: 64  YEILPISALIGAVLGLGTLASNSELIIMRAAGISLWRIVGWVMRSALLLVILSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      + + +   +A                      +       +Q   +   +D 
Sbjct: 124 IPVTNERAESVKSHRSVAQLGEVKGYWSREGQRFIYIDYANSQGNLRNVQ--VVDFDQDY 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   +  A SG  + D Q  + N  +V      +    I + +   L  +      + L 
Sbjct: 182 RLQALLNADSGQFEQDGQWRLQNSVQVDILEAGNAVQHIAEQQPLALALKPKYVHMVTLD 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             D + S L++       Y  ++ +TY+  F ++L      +   LI+          + 
Sbjct: 242 PEDLSPSQLISFMRYMEEY-SQVPKTYQLAFWQKLASPFALITLVLIACSFIFGPLRQQS 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I + + + F     F      +        + +  L        L+ + +
Sbjct: 301 MGFRLVIALFIGLGFYYLQDFLGYASLVYSPSPVWFVFFPILLMFIGGSYLLYRAR 356


>gi|226943298|ref|YP_002798371.1| YjgP/YjgQ family permease [Azotobacter vinelandii DJ]
 gi|226718225|gb|ACO77396.1| permease YjgP/YjgQ family [Azotobacter vinelandii DJ]
          Length = 376

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 118/353 (33%), Gaps = 26/353 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   +       +LL+I  Y +P+ L 
Sbjct: 5   IIPRYLSRELLMTLGAVSAVLLAIIMSGRFIKYLAQAAQGLLDPGVLLQIMLYRVPSFLE 64

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +  ++E+ ++  TG S   L    L  AI ++  +      + 
Sbjct: 65  LILPLGLFLGILLAYGRLYLDSEMTVLAATGMSPQRLAVYTLVPAIPVAALVAWMSLGLA 124

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEE--NLFFRLDDDLYIKISKYNPNNTLQGIFI---VD 177
           P+    ++QL  + +    F  L        +    +       +    L  +FI     
Sbjct: 125 PQGIRLVEQLLNEQKALTEFDTLVPGRFQTMKDGSRVTYVEDLTDDRTELSRVFISEKQM 184

Query: 178 SRDTQTHKIYYAQSGSIDLDR------QAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           SRD    +                   + +IL +G  +  +P   D  ++++ +Y +   
Sbjct: 185 SRDGGKERGIAVLVAEGGRQEVQADGSRYLILQNGYRYDGNPGEADYRVIRYDTYGVLLA 244

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               S+ + +      S L+                +++E   RL+  L   +     ++
Sbjct: 245 RPAVSSEINEREAIPTSELI----------GSDQPRHQAELQWRLSLPLLVFVVA---VL 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLF 342
           A        ++ +   +  ++ +          +  ++   + P  I + ++ 
Sbjct: 292 AVPLARANPRQGRFLKLLPAILLYMAYLATLIAVRGELDKGKIPMLIGLWWVH 344


>gi|330751983|emb|CBL80496.1| predicted permease YjgP/YjgQ [uncultured Polaribacter sp.]
          Length = 363

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/363 (15%), Positives = 111/363 (30%), Gaps = 6/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLK-ISGYLIP 58
           MK  + YIL+    +FL + L ++ IA  I + ++I+         LN +L       I 
Sbjct: 1   MKIIDWYILKRFLVTFLFTLLILIPIAIAIDVSEKIDNFLEHPNLGLNEVLNDYYLNFII 60

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
                  P    +      + ++ NTE++ I N   S    + P    A L++I      
Sbjct: 61  YYTNTFMPLALFIAVILFTSKLSNNTEIIAITNAKVSFTRFMYPYFIGATLITILSLGMN 120

Query: 119 NIIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF- 174
           + + P     R   ++                +   +L D  YI I  +N  N +   F 
Sbjct: 121 HYVVPNSSKVRKAFEKKYINNSKQKNALKYVSDFSLQLTDSTYIFIRSFNTENNVGNDFN 180

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                  +      A   S +       LN             I               +
Sbjct: 181 SETYNGLELISKLSADRLSYNNKDSIFTLNRWRKRLVYKDRDSIFSGSKMDTVFNFAPKD 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                  A +   + L+     +     + L  Y  E +KR +  +   I  +I++  A 
Sbjct: 241 LIYKSAFAQEMPSNELVAFINISKKRGVKNLNAYLVELYKRSSLPIASYILTIIAVALAF 300

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           ++        +      + +          +      N      +   LF + +I+L   
Sbjct: 301 RKRRGGTGVNLAVGVGIMFLYVFFMKVGEVLGSVAGVNSLAYVWIPNILFGLIAIYLYFH 360

Query: 355 KKK 357
            +K
Sbjct: 361 ARK 363


>gi|320195129|gb|EFW69758.1| Permease Ygh-P2, YjgP/YjgQ family [Escherichia coli WV_060327]
          Length = 359

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 123/354 (34%), Gaps = 3/354 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A      + +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                  + + + +    +  +  +++         P+  L L     +  L +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351


>gi|124009520|ref|ZP_01694195.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
 gi|123984866|gb|EAY24834.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
          Length = 371

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/374 (13%), Positives = 132/374 (35%), Gaps = 18/374 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILL-KISGYLIPT 59
           +K  + YIL+    +F    + ++ I  +I I ++I   +   +++  +  K     IP 
Sbjct: 2   LKRLDKYILKKFLVTFFFVVIILISIIVIIDITEKIGDFNKMDQTVWQIFTKYYLNFIPY 61

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
               ++P    + T  V   +  +TE++ I ++G S   ++ P L  + L+++  F    
Sbjct: 62  WANSLSPILIFIATVFVTARLATHTEIIAILSSGVSFKRMLVPYLLGSSLIAVLTFYLIG 121

Query: 120 IIEPKCR---------STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL 170
            + PK               +     +            +    D+      K+   N  
Sbjct: 122 WVIPKANRVRLKFENTHIKDKFYFTDRNVHLKIAPNTFAYIESYDNTSHVGYKFTLENIS 181

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI---SKDISIMKFKSYT 227
              +    +  + +     +    D DR+  ++ + ++   +     +  I+  +     
Sbjct: 182 GFEYDGKRQQKKLNSKVECRRILWDKDRKKWVMENYKITEFNRGDSLNYKITYGQSLDTL 241

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
           +  + ++  +  +         L              LETY  E ++R+      +I  +
Sbjct: 242 MNLKPSDFESKYMFNEQLTSDQLEAYIAELKQRGVGKLETYLVERYERMAYPFAVIILTV 301

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCI 346
           I ++     +   +      I +   ++F ++     +   I +N    P++  +    +
Sbjct: 302 IGVIV---SSRKTREGAGLQIAVGFGLAF-IYVMLIMVSRSIGKNGELPPLVAAWMPNIL 357

Query: 347 SSIFLLMIKKKYTK 360
            ++  L++ K+  K
Sbjct: 358 FALIGLIMYKRVPK 371


>gi|218701754|ref|YP_002409383.1| hypothetical protein ECIAI39_3474 [Escherichia coli IAI39]
 gi|227887686|ref|ZP_04005491.1| inner membrane protein [Escherichia coli 83972]
 gi|301019929|ref|ZP_07184064.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|218371740|emb|CAR19591.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli IAI39]
 gi|227835082|gb|EEJ45548.1| inner membrane protein [Escherichia coli 83972]
 gi|299882027|gb|EFI90238.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|307555074|gb|ADN47849.1| putative permease [Escherichia coli ABU 83972]
          Length = 359

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 124/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S +   + +
Sbjct: 181 DLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 357


>gi|148827127|ref|YP_001291880.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase [Haemophilus influenzae PittGG]
 gi|148718369|gb|ABQ99496.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase [Haemophilus influenzae PittGG]
          Length = 367

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 129/354 (36%), Gaps = 15/354 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQQILVKVALIMSLLTAGIAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   T   L    F   +++  +       +N ++ +++      +
Sbjct: 122 PWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQK 181

Query: 183 --THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G    +    Q + L + +    +    D  I  F  Y       ++  
Sbjct: 182 QTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYQAYLGYQSAEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +  +  LS L++ + ++           ++E H R+T  L   +  LI++  +    
Sbjct: 242 TNDEVAELTLSQLIDLDSSSA----------KAELHWRITLILAVPLMALIAVPLSRVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              +  KI P  +   I F +   F       +     +  L    F + ++ L
Sbjct: 292 RQGRFAKILPALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVL 345


>gi|68250307|ref|YP_249419.1| permease [Haemophilus influenzae 86-028NP]
 gi|145633639|ref|ZP_01789366.1| molybdate ABC transporter permease protein [Haemophilus influenzae
           3655]
 gi|145639139|ref|ZP_01794746.1| predicted permease [Haemophilus influenzae PittII]
 gi|148825753|ref|YP_001290506.1| permease [Haemophilus influenzae PittEE]
 gi|229847325|ref|ZP_04467427.1| predicted permease [Haemophilus influenzae 7P49H1]
 gi|260581045|ref|ZP_05848867.1| permease [Haemophilus influenzae RdAW]
 gi|68058506|gb|AAX88759.1| predicted permease [Haemophilus influenzae 86-028NP]
 gi|144985516|gb|EDJ92332.1| molybdate ABC transporter permease protein [Haemophilus influenzae
           3655]
 gi|145271701|gb|EDK11611.1| predicted permease [Haemophilus influenzae PittII]
 gi|148715913|gb|ABQ98123.1| predicted permease [Haemophilus influenzae PittEE]
 gi|229809750|gb|EEP45474.1| predicted permease [Haemophilus influenzae 7P49H1]
 gi|260092285|gb|EEW76226.1| permease [Haemophilus influenzae RdAW]
 gi|301170459|emb|CBW30066.1| conserved inner membrane protein [Haemophilus influenzae 10810]
 gi|309750720|gb|ADO80704.1| Lipopolysaccharide export permease, LptF [Haemophilus influenzae
           R2866]
          Length = 367

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 129/354 (36%), Gaps = 15/354 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   T   L    F   +++  +       +N ++ +++      +
Sbjct: 122 PWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQK 181

Query: 183 --THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G    +    Q + L + +    +    D  I  F  Y       ++  
Sbjct: 182 QTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYHAYLGYQSAEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +  +  LS L++ + ++           ++E H R+T  L   +  LI++  +    
Sbjct: 242 TNDEVAELTLSQLIDLDSSSA----------KAELHWRITLILAVPLMALIAVPLSRVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              +  KI P  +   I F +   F       +     +  L    F + ++ L
Sbjct: 292 RQGRFAKILPALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVL 345


>gi|323173776|gb|EFZ59405.1| hypothetical protein ECLT68_2094 [Escherichia coli LT-68]
          Length = 359

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 123/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I + G S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S +   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLDELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFVLSAPVTALGLPIAFVLVALSLVYWYDR 357


>gi|306816678|ref|ZP_07450810.1| hypothetical protein ECNC101_08669 [Escherichia coli NC101]
 gi|331659261|ref|ZP_08360203.1| putative permease [Escherichia coli TA206]
 gi|305850243|gb|EFM50702.1| hypothetical protein ECNC101_08669 [Escherichia coli NC101]
 gi|315297644|gb|EFU56921.1| conserved hypothetical protein [Escherichia coli MS 16-3]
 gi|331053843|gb|EGI25872.1| putative permease [Escherichia coli TA206]
          Length = 359

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 123/354 (34%), Gaps = 3/354 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A      + +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                  + + + +    +  +  +++         P+  L L     +  L +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351


>gi|262068069|ref|ZP_06027681.1| permease, YjgP/YjgQ family [Fusobacterium periodonticum ATCC 33693]
 gi|291378155|gb|EFE85673.1| permease, YjgP/YjgQ family [Fusobacterium periodonticum ATCC 33693]
          Length = 363

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 123/362 (33%), Gaps = 11/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++YI +   + FLM+ +  + +  + Q  + I  ++        +      L+P + 
Sbjct: 3   KKLDIYISKYFIKYFLMNIIGFMGVFLLAQTFKIIKYINQGKLEGGEIFDYILNLLPKMF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     ++ M  N E++ +  +G   + +++  L +A ++S+F+F   N I
Sbjct: 63  VETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLFVFFVNNSI 122

Query: 122 EPKCRSTIKQLSA-----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
             K  + I            +L  T               L   I++         I + 
Sbjct: 123 YTKSLAKINFYRKGEIDASLRLPKTKENAFFINNNDGYIYLMGNINRETGLAEKVEIVVY 182

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D+  ++  +I  AQSG  D + +  +L+   ++        I+ +++ S     +  N  
Sbjct: 183 DTEISKPVEIITAQSGKYDKENKKWLLSGVNIYNVETKKS-ITKVEYDSDRFGEDPNNFI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +         L           E    Y SE  KR +      I   I +      
Sbjct: 242 RAAAEDPRMLTIKELKKTIKEQKNIGEDTRIYLSELAKRYSFPFASFIVAFIGLSV--SS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
             VR  +    + I +   +G +   S     +  N    P +  ++       I +  +
Sbjct: 300 KYVRGGRTTINLVICVVAGYGYYLV-SGAFEAMSLNGILNPFISSWIPNILYFIIGMYFM 358

Query: 355 KK 356
            +
Sbjct: 359 NR 360


>gi|330938933|gb|EGH42432.1| permease YjgP/YjgQ [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 302

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 94/299 (31%), Gaps = 4/299 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +  +   +  +  + S T +L   L       P  
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLVSMFAFIDEMRDI-SDTYTLTDALSFVMLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++  ++EL I+   G S   ++  V+   +LL I   +    
Sbjct: 60  VYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMIAGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ +         L+ R  D+     +       L          
Sbjct: 120 VAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINTVQPNGLMLGVTRYHFDDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+  +   D     L D      +  S ++     + + +       ST+++
Sbjct: 180 RHMLTSSFAKEANFKTD--YWELKDVTTTHFNDGSTEVVNTPVERWDVALSPQLLSTVIM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                ++S L     +    +      Y   F  ++ Q    V   L++I         
Sbjct: 238 PPESLSISGL-WSYAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFGPLRS 295


>gi|298372644|ref|ZP_06982634.1| membrane protein [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275548|gb|EFI17099.1| membrane protein [Bacteroidetes oral taxon 274 str. F0058]
          Length = 389

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 116/354 (32%), Gaps = 6/354 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
              + YI+R    +F M  + I+ I+ V    ++++  S +   +  I+       IP  
Sbjct: 34  SILDRYIMRKYLSTFFMCIIMIISISVVFDYAEKVDDFSENNAPMRAIIFDYYFNFIPYF 93

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + TP    +      + M  NTE++ + +TG S   L+ P    A L+ +  F+    
Sbjct: 94  ANLFTPLFAFISVIFFTSKMAYNTEIIAMLSTGMSFKRLLVPYFMSATLIGLMSFLLGGF 153

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +            S L  N+   L+  +     +Y  N      F ++  +
Sbjct: 154 VIPASN-KPRLDFEDKYYRKFRSELVTNIQLELEPGVVAYFERYEENINRGYNFSLEKFE 212

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +                    L +        + + +++       ++ +  +      
Sbjct: 213 GKKLVSRLTAEYIDMDSLYHWHLVNYVKRDFKGMREIMTMGDGLDSVIKMDPQDFFITGE 272

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            A     + L               + + +E++ R       +I  LI +  A   +   
Sbjct: 273 DAPQMTNTKLYQYLRRQKERGIPGAQKFENEYNNRFAMPFAALILTLIGVSLA---SRKV 329

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +      +   +++S  ++  F  +      N     +L ++L  I    + +I
Sbjct: 330 RGGTGLHLGFGIALS-AIYILFCTVSSMFAINGTMPSLLAIWLPNIIFTTIGII 382


>gi|82524032|emb|CAI78710.1| hypothetical protein [uncultured Flavobacteriaceae bacterium]
          Length = 358

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 123/361 (34%), Gaps = 4/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F M  L  + I   + + ++I  +  +   L  ++          
Sbjct: 1   MKILDWYILKRYLFTFFMMLLLFIPIGITVNLAEKIGKMLENEVPLKAIVIFYLNFTVHF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++   ++G S    ++P +  A ++          
Sbjct: 61  AYLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGVSFSRFLRPYMIGASIIGGLALFLGMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P       +   K       +  + N+F +++D+ +I +S ++ NN L   F +    
Sbjct: 121 LTPIASKGFNEFEYKYLYPNRKTTQDVNVFRQINDNEFIYVSSFDLNNKLGINFTLEHIE 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D +      A++           L D        I  ++   + K      +  + + ++
Sbjct: 181 DNKLTYKISAKTIKYIAKDTTYRLVDYVKRTVGKIEDELVFERNKDTLFAFDVEDLTPVI 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             A     + L              +  Y    +++ +  +   I  +I++      ++ 
Sbjct: 241 YIAEILPYTELTKFIEKEKTRGSSNIGRYELVLYRKWSLPVSVFILTIIAVAV---SSIK 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
           R+      + I + I+    +         EQ+ +   I   F   +  I    + +   
Sbjct: 298 RRGGMGVNLAIGICIAMVFVFFDKIFGVLAEQSNFPSIIAVWFPNVVFGILAFYLLRNAK 357

Query: 360 K 360
           +
Sbjct: 358 R 358


>gi|86749599|ref|YP_486095.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
 gi|86572627|gb|ABD07184.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
          Length = 361

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 108/357 (30%), Gaps = 10/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + +   Y       S L     +  +   +  +  +      + S  ++ + S + +P +
Sbjct: 3   LNTLGRYFAARFVSSALGVFFGLFVLLVFVDYIDLLRRAGGLSVSAFVIAQASFFRVPQL 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + PFC  +       +++R  EL+I    G S    I P L+ A+ L +F     N 
Sbjct: 63  LERLLPFCILIGGMTCYLALSRRLELVIARAAGLSAWQFIAPALWSALALGVFASAVFNP 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFR----LDDDLYIKISKYNPNNTLQGIFIV 176
           +    +   KQ+ A+     + S  + N F+      +    I  ++      +     V
Sbjct: 123 MSAYMQERAKQMEAELFGQGSGSLQDANGFWMNQVSPEGQSIINAARSQQQGAVLSGISV 182

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              +         ++    L+    +L D   +      ++ + +           A   
Sbjct: 183 FRFEPDFQFKDRIEAREAVLEPGYWLLKDVRKYTLDSAPEEQATL---RLPTALTLAQVR 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                    +   L +    + +        YR ++HK L +        +++   +   
Sbjct: 240 NSFATPESVSFWQLPSYIKASESSGFATAG-YRLQYHKLLAKPFLLAAMVMLAASVSL-- 296

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              R       +   +   F ++          +    +         C+  +   +
Sbjct: 297 RFFRFGGVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFL 353


>gi|300725025|ref|YP_003714351.1| putative transmembrane protein, transport [Xenorhabdus nematophila
           ATCC 19061]
 gi|297631568|emb|CBJ92277.1| putative transmembrane protein, transport [Xenorhabdus nematophila
           ATCC 19061]
          Length = 359

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 119/355 (33%), Gaps = 2/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I ++ LM+   +V ++ +I+ + ++  V     +       +   +P  + +
Sbjct: 5   LDRYIGRTILQTILMTLFMLVSLSGIIKFVDQLRKVGQGEYTALSAGIYTLLSVPKDIQI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++   +EL+++  +G +R+ +   V+  AI L +   +    + P
Sbjct: 65  FFPMAALLGALLGLGALATRSELVVMQASGFTRLQVAGSVMKTAIPLVLLTMVIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   ++     +     + L+ +   D     S    N            + + 
Sbjct: 125 QGEQLARNYRSQKMFGGSLMSTTKGLWAKDGRDFVYIQSVGKDNALNGVSIYHVDENRKL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI-SIMKFKSYTLQTESANSSTIVLKA 242
             + YA S   D D Q   L+  E    +   + I S      +  Q        + L  
Sbjct: 185 LSVKYAASAVYDKDNQQWKLSQVEESDLTKFGRIIGSQRVSAEWNSQLTPEKLGVVSLDP 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++  L +          +    Y+    K++   L   +  L+++            
Sbjct: 245 DALSIRGL-HQYITYLKLGQQDAGRYQLNMWKKVFAPLSVAVMMLMALSFIFGPLRCVPM 303

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                + IS+   F V       +  +   P  +  L   L        L++ KK
Sbjct: 304 GFRVVVGISMGFLFYVLNEIFGPLSLVYSMPPLLGALLPSLLFFGLSVYLLLHKK 358


>gi|296116657|ref|ZP_06835267.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976869|gb|EFG83637.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
           23769]
          Length = 371

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 110/359 (30%), Gaps = 14/359 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +  LYI R    + L    F+  +  +   +  +  VSS      +++ +I+   IP  +
Sbjct: 6   TLSLYIARQFTYAVLAVIAFLTGLITLFDFIDLLRRVSSRPNVPASLVSEIAVLHIPFAM 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIK-PVLFLAILLSIFLFISENI 120
             + PF   +        + R++EL++    G S    +  PV    ++ ++   +   +
Sbjct: 66  LEILPFGVLLGGIICFWRLARSSELVVARAAGISAWQFLAGPVGCALLIGALSTTVISPL 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                R          + +   +         +       +         + + + D+  
Sbjct: 126 SSAMYRRAEILDQQYLRESTVKTINMSGGALWMRQSDSGLVDHGVAIIHARRVRLRDNVM 185

Query: 181 TQTHKIYYAQSGSIDL----DRQAIILNDGEVH----RKSPISKDISIMKFKSYTLQTES 232
             +    +   G   +    +     L +G       R     ++   M   +       
Sbjct: 186 RISGISIFRLDGQDHMLARIEAGHGYLGNGRWVLEGARLLHPDENPVDMGHMTLRADLTL 245

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           A     +   N  ++  L        N        +R  F   LT  +      L++  A
Sbjct: 246 AGVQDSLASPNTLSVWAL-PGFIKLLNRSGFSSIRHRLRFQSLLTLPVLCGTMALVA--A 302

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                  R+   +  I + +   F +F   S I  +  ++    P+L  +    + + L
Sbjct: 303 GFSMRPARRGGVVRMISLGVGAGFALFAI-SKIAAQFGESGALPPVLAAWAPTGAGLCL 360


>gi|170681358|ref|YP_001745244.1| YjgP/YjgQ permease [Escherichia coli SMS-3-5]
 gi|170519076|gb|ACB17254.1| putative permease, YjgP/YjgQ family [Escherichia coli SMS-3-5]
          Length = 359

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 125/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS       + + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTLAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S +   + +
Sbjct: 181 DLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GVGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 357


>gi|90416561|ref|ZP_01224492.1| permease YjgP/YjgQ [marine gamma proteobacterium HTCC2207]
 gi|90331760|gb|EAS46988.1| permease YjgP/YjgQ [marine gamma proteobacterium HTCC2207]
          Length = 356

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 115/356 (32%), Gaps = 2/356 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     ++ + +  +  ++ L +V +  V  I+ +   V+         +     L+P+ 
Sbjct: 2   MHRLSWHVGKTVFAAIAVTLLVLVGLDSVGAIIDQSADVT-RNYFFADAMIYVVTLVPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   +     L  +  N+E++++   G S + ++  VL   ++  I        
Sbjct: 61  IYEYIPFASLIGCLVGLGLLAGNSEVIVMRAAGVSPLRIVGFVLKPVLIFIILGMTIGEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P      +      +   +       L+ R  +      + +             + +
Sbjct: 121 FSPYLDQLAEGKREYLRKGESAQDSSSGLWNREGNQFVHANAVFPGGVLYGVTRYQFNDE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q  +  +A   + +   +  I  +  V R    S +   +  + +  +         +L
Sbjct: 181 RQIQEASFASRATFNSTERYWIEENVSVTRFLGDSTERDKLITRRWDSELTPNVLMLNIL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            A+  ++  L +        +     +Y     ++  Q L  +   L+ I          
Sbjct: 241 PADSLSIESLYS-YIAFLELQNIDTASYEVALWRKALQPLIIIGLVLLGISFVFGPLRDS 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  I +   ISF +F      +  + Q P  + +L   LFC+     L+ + 
Sbjct: 300 TMGFRIFIGVVFGISFRIFQDMLGPLSVVFQFPPLLAVLVPILFCVLVGVFLLRRS 355


>gi|103487657|ref|YP_617218.1| permease YjgP/YjgQ [Sphingopyxis alaskensis RB2256]
 gi|98977734|gb|ABF53885.1| permease YjgP/YjgQ [Sphingopyxis alaskensis RB2256]
          Length = 402

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 125/358 (34%), Gaps = 9/358 (2%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I    + + +    +  + ++L+  + V++    ++++ ++   LIP  L +
Sbjct: 7   IDRYIARLIFFPMVGTLVLSAMLLVLEKMLRLFDFVATEGGPVSVVWRMLANLIPEYLSL 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +        +  ++EL ++   G S   L++     A+ L+         I+P
Sbjct: 67  GIPIGLMLGILLAFRRLATSSELDVLKGVGMSFGRLMRMPYVYAVGLAALNLAIVGFIQP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL-QGIFIVDSRDTQ 182
             R   + L  + +     + ++   F RL + + ++I +        +GIF+   +   
Sbjct: 127 YARYAYEGLQFELRSGALGASIKVGEFTRLGERMTLRIEESYNEGRSLRGIFVRGEQRDG 186

Query: 183 THKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                 A  G            + L+ G +  +SP      ++ F ++ L          
Sbjct: 187 QRVSATASRGQFLATDDPETIILRLSQGVLIHESPKFAVPRVLTFDNHDLPIPLPRIEAF 246

Query: 239 VLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            L+     +  +  L      +     +     R+ FH R+ + +   +  LI++  A  
Sbjct: 247 RLRGGADREMTIPELFVAGK-DRRQSEQTRLESRANFHFRIVEVMSMFLIPLIAVALAVP 305

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                    +    + L     +      +  +   +P     +   LF   +I++  
Sbjct: 306 PKRSTSSLGVFLSIVLLVTQHKINQYAEDLGARGAVDPLIALWVPFLLFAALAIWMYY 363


>gi|218961269|ref|YP_001741044.1| putative Permease [Candidatus Cloacamonas acidaminovorans]
 gi|167729926|emb|CAO80838.1| putative Permease [Candidatus Cloacamonas acidaminovorans]
          Length = 362

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 117/357 (32%), Gaps = 5/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI+R   R++L+  L  V I  VI ++  +  +  +  +           +P +
Sbjct: 1   MRILDKYIIREFLRTYLIIFLSFVAIFVVIDVIDNLPRLIRNGATAQQATIYYLMRLPYL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L + +P    +    ++++++++ E + I   G S    + P+  + +++SI + +    
Sbjct: 61  LVLTSPVTVLLTGLFMMSALSKHNESIAIRAAGISIKRAMLPLFGIGLIISIAVAVFGEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +T   +                                  +     + I+D   
Sbjct: 121 VVPWAETTKNYVYNVQIKGQQPDDQMLKARIHYQGKANDFYYFGFFDGYKNNLKIIDLTR 180

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                    +     S D +    IL D ++ R +   +       ++  +  +      
Sbjct: 181 IDFKTKQITEHITASSADWNGSRWILKDCDLRRFANGKQVFMAHYPQTDLVILDVQPQDF 240

Query: 238 IVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           I +     +L+F  L           +       + H +++  L  +I     I  A   
Sbjct: 241 IRISQKTLSLNFWQLKEYIGRMKKLGDNAAREIVDLHMKISFPLTNLIVIFFFIPIATSN 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
              + R  I  + + +   + +       + +    NP++        F +  +  L
Sbjct: 301 IRSKGRGWIIMLGLVVCFIYLIVVRVCQSLGYNSIINPFWAAWFPNIFFTLLGLGFL 357


>gi|119503286|ref|ZP_01625370.1| hypothetical protein MGP2080_11498 [marine gamma proteobacterium
           HTCC2080]
 gi|119460932|gb|EAW42023.1| hypothetical protein MGP2080_11498 [marine gamma proteobacterium
           HTCC2080]
          Length = 353

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 102/355 (28%), Gaps = 4/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+   +  + +     +V +  +  ++  ++ +S         L    + +P  
Sbjct: 1   MGRFDRYLAGNVLGATVGVLAVLVGLDALSSVIDELDDLSPD-YGFTDALIYVAFTLPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF   +     L  +   +EL ++   G S   L    L  A+LL++  F+    
Sbjct: 60  LHEYVPFAALIGALVGLGRLAATSELTVVRAAGRSLPQLALGTLRPALLLAVLGFLVGEF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P          A AQ + +       ++ R  D      +            +    +
Sbjct: 120 VSPVAEQFAVSHKALAQGSQSSFTGRGGVWNRDGDTFIHVSAVERGGIIHGVQLLTFDEE 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +   A+ G+        +L        +        +  + +  +      +   +
Sbjct: 180 RRLTRSLRAERGTYQ--GGQWLLEKVSRTELTQDRAVTDALIQQVWETEVTPQLLALEAV 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +      L  P       +  +       F +++ Q        L+++          
Sbjct: 238 ALDSLPTLEL-WPYAQYLRKQGLMYRDVELAFWRKVLQPFAVAGLVLVAMSFIFGPLREG 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                    + + + F +   F      I   P  +        C  +   L+ +
Sbjct: 297 SLGARIFTGVIIGVVFRISQDFFGPASLIFGLPAILAAAAPIGVCWIAGGWLLTR 351


>gi|78779866|ref|YP_397978.1| putative permease [Prochlorococcus marinus str. MIT 9312]
 gi|78713365|gb|ABB50542.1| permease-like protein [Prochlorococcus marinus str. MIT 9312]
          Length = 400

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/379 (14%), Positives = 125/379 (32%), Gaps = 27/379 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  I    L +      I+  +  +   I  +      +   L+   Y +P+ L
Sbjct: 25  LIDRWLLGQIIPPMLFAISAFTVISLSVGVMFDLIRKIVEYGLPVLKALQALIYSLPSFL 84

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      ++ N+ELL + + G     +I P + ++I ++   F   + +
Sbjct: 85  VLSFPMAVLLSTLLSYGKLSANSELLALRSLGIKTSRIIAPAIAVSIFMTGLTFYFNDNL 144

Query: 122 EPK----------------CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN 165
            P                       + +       +                +I  +   
Sbjct: 145 VPNSNKLAELTLRSGVGSSFNREKSKNNIIFSRKGSRIDTNNKPTKTNTFLTHIFYASRF 204

Query: 166 PNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS 225
            NNT++ + ++D       +I  A+S   D    + +  DG +   +  +   + + FK 
Sbjct: 205 ENNTMREVTVLDFSRVNIKQILTAKSAVFDKKNSSWVFADGSIVS-TDSTGQTTSINFKQ 263

Query: 226 YTLQT--ESANSSTIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLFP 282
           Y         + + +   A+D +L   L            + +   +    ++ T     
Sbjct: 264 YLYPFVEGPLDLARVPKDASDMSLKEALEAERIYKKIGDLKQIRKIQVRIQEKFTLPCAC 323

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           ++FGLI  +         +  K     +S+ +   +++  S+I           PI+  +
Sbjct: 324 LVFGLIGSILG--SQSNLRSSKSQGFGLSVIL-ILMYYVISFICSSFGVKGLLPPIIAAW 380

Query: 343 LFCISSI---FLLMIKKKY 358
              I S+   F  +    Y
Sbjct: 381 FPVIISLSGGFYFLRNSNY 399


>gi|145635439|ref|ZP_01791140.1| predicted permease [Haemophilus influenzae PittAA]
 gi|145267313|gb|EDK07316.1| predicted permease [Haemophilus influenzae PittAA]
          Length = 367

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 128/354 (36%), Gaps = 15/354 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   T   L    F   +++  +       +N ++ +++      +
Sbjct: 122 PWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQK 181

Query: 183 --THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G    +    Q + L + +    + +  D  I  F  Y       ++  
Sbjct: 182 QTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSVLPDFRITHFDEYQAYLGYQSAEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +  +  LS L++              + ++E H R+T  L   +  LI++  +    
Sbjct: 242 TNDEVAELTLSQLIDL----------NSSSAKAELHWRITLILAVPLMALIAVPLSRVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              +  KI P  +   I F +   F       +     +  L    F + ++ L
Sbjct: 292 RQGRFAKILPALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVL 345


>gi|255691880|ref|ZP_05415555.1| putative membrane protein [Bacteroides finegoldii DSM 17565]
 gi|260622433|gb|EEX45304.1| putative membrane protein [Bacteroides finegoldii DSM 17565]
          Length = 365

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/362 (11%), Positives = 121/362 (33%), Gaps = 7/362 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  + YI++    +++ +   I+ IA V    ++++ +       + I+ +     IP  
Sbjct: 8   KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWSKIIFEYYMNFIPYF 67

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F+  + 
Sbjct: 68  SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALTTFMLSSY 127

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK   T      +       +             +    +  N   T     +    D
Sbjct: 128 VIPKGSVTRLNFEDRYIKPKKQNTARNVQLEVDSGVIAYIDNYNNAMKTGNRFSLDKFVD 187

Query: 181 TQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +      A+  + D        ++D  +     + + I+        +  E ++   + 
Sbjct: 188 KKLVSHLTARRVTYDTTTVHKWTIHDYMIRELDGLKEKITKGDRIDSIINMEPSDFLIMK 247

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +        L +            ++ +  E+HKR+       I  +I +      +  
Sbjct: 248 NQQEMLTSPQLSDYIEKQKRRGFANIKEFEIEYHKRIAMSFASFILTIIGVSL----SSR 303

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKKY 358
           + +  +             +  F  I      N    P++ +++   + +     + +K 
Sbjct: 304 KTKGGMGLHLGIGLGLSFSYILFQTITSTFAINGNVPPVIAVWIPNILYAGIAFFLYQKA 363

Query: 359 TK 360
            K
Sbjct: 364 PK 365


>gi|294053783|ref|YP_003547441.1| permease YjgP/YjgQ family protein [Coraliomargarita akajimensis DSM
           45221]
 gi|293613116|gb|ADE53271.1| permease YjgP/YjgQ family protein [Coraliomargarita akajimensis DSM
           45221]
          Length = 372

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/372 (13%), Positives = 117/372 (31%), Gaps = 16/372 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L+    +F+++   +V +  +  +   +  + SS  +   +L      +P  
Sbjct: 1   MSLLDRYVLKEWVVAFVLTLGVVVGVLVLQNMYDSLPDLLSSNATGPEILFYYMLSLPGY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP V P  F +     L +++RN E++ +  TG S   + + +      LS  LF     
Sbjct: 61  LPTVLPITFLVSLLFSLGTLHRNNEVIAMRATGASLFRISRSLWVAGFALSGLLFYLTAE 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR- 179
           + P      +               + +             ++          F   +  
Sbjct: 121 VVPMTVERARTFIDNLSYTAKEKKQDVDAREVGLLHNLGFDNRKEGRLWFMNRFSERAWL 180

Query: 180 -----------DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD-ISIMKFKSYT 227
                      D        A+ G  D  +   +   G   +  P + D I ++ F+   
Sbjct: 181 AIGVNVHTRTADGIEVLRVSAEEGFYDEVKGYWVFLRGRELQIDPDTGDEIRLLSFEEKA 240

Query: 228 LQTESANSS---TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
               + +      +  K N+ +L  L       P      +  Y + +   L      ++
Sbjct: 241 YPEYTEDPDLMLAMHKKPNELSLLELREIIETVPAEENPAVHAYTTRYFSLLAAPFSCLV 300

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
              I++  A           I       ++ + +    S +  +    P+    L  F  
Sbjct: 301 LVGIAVPFAVSGVRANPMIGISKCMGYFAVFYVLITISSILGERHMIAPWLAAWLPNFAM 360

Query: 345 CISSIFLLMIKK 356
            + S++L +  +
Sbjct: 361 LVVSMWLYLRAR 372


>gi|301156462|emb|CBW15933.1| conserved inner membrane protein [Haemophilus parainfluenzae T3T1]
          Length = 363

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 123/357 (34%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + +S +     ++ I +  Q+++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILTRYLTKEVFKSQIAILFILLLIFFSQQLVRVLGSAANGKVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L++  L L++  +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVRVALILSLFTAGLAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   T   L    F    ++ ++        N +  +++   +   
Sbjct: 122 PWAIQKQAAIVEDAKANPTMGALASGQFMSTSNNNFVLFIDKINGNQISDVYLFQMKAKG 181

Query: 183 --THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G    +    Q + L +      + +  D  I  F  Y        +++
Sbjct: 182 QTKPSVVTAEKGELKALPNGDQVLNLQNTLRVEGTSVLPDFRITHFDDYQAYLGHQETNS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A + +   LL           +     ++E H R+T  L   +  LI++       
Sbjct: 242 ESDEAAELSFEQLL----------KDKSAAAKAELHWRITLILAVPLMALIAV---PMSK 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLM 353
           +  ++ +   I  +L +    F   S        +      ++ L       + +++
Sbjct: 289 VNPRQGRFAKILPALLLYLIYFLLQSSFKSAGGADKLDAGLLMPLVNIAFLILGIVL 345


>gi|260551089|ref|ZP_05825293.1| permease YjgP/YjgQ family protein [Acinetobacter sp. RUH2624]
 gi|260405856|gb|EEW99344.1| permease YjgP/YjgQ family protein [Acinetobacter sp. RUH2624]
          Length = 356

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/356 (10%), Positives = 111/356 (31%), Gaps = 4/356 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ +    +   + + +  +  +   L  +  +     +         +  P  L
Sbjct: 5   RIVAKYVTKTTALAMFGTTIVLSVLQVLFTYLGELGEL-KPDYNAWQAFIYVLWGAPRYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L ++  N+EL+++ + G S   ++  V+  A+LL +  F     +
Sbjct: 64  YEILPISALIGAVIGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      + + +   +A                      +       +Q   +   ++ 
Sbjct: 124 VPYTNEKAQSIKSHRSVAALGEVKGYWSREGQRFIYIDYANSQGNLRDIQ--VVDFDKEY 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
               +  A+ G    D Q  +    +    +  +  ++    +S  L  +      + L 
Sbjct: 182 HLQSVINAEQGKFIKDGQWSLQKASQTDILTDGNSILNNHDQQSLGLALQPKYVHMVTLD 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             D + S L++       Y  ++ +TY+  F +++      +   L++          + 
Sbjct: 242 PEDLSPSQLISFMRYMDEY-SQVPKTYQLAFWQKVASPFSLITLVLVACSFIFGPLRQQS 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I + + + F     F      +        +L   +    +   L+ + +
Sbjct: 301 MGFRLVIALFIGLGFYYLQDFLGYASLVYAPSPAWFVLVPIILMFGAGSYLLYRAR 356


>gi|237740742|ref|ZP_04571223.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|229422759|gb|EEO37806.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
          Length = 363

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 126/362 (34%), Gaps = 11/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++YI +   + FLM+ +  + +  + Q  + I  ++        +      L+P + 
Sbjct: 3   KKLDIYISKYFIKYFLMNIIGFMGVFLLAQTFKIIKYINQGKLVGGEIFDYIINLLPKMF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     ++ M  N E++ +  +G   + +++  L +A ++S+F+F   N I
Sbjct: 63  VETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFIISLFVFFVNNSI 122

Query: 122 EPKCRSTIKQLSA-----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
             K  + I            +L  T               L   I++   N     I + 
Sbjct: 123 YTKSLAKINFYRKGEIDASLRLPTTKENAFFINNTDGYIYLMGNINRETGNAEKIEIVVY 182

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D+  ++  +I  AQSG  D D +  +L+   ++       +I+ +++ S   + +  N  
Sbjct: 183 DTEISKPVEIITAQSGKYDKDNKKWMLSGVNIYNVETKK-NITKVEYDSDRFREDPNNFI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +         L           E    Y +E  KR +      I   I +      
Sbjct: 242 RAAAEDPRMLTIKELKKTIKEQKNIGEDTRIYLAELAKRYSFPFASFIVAFIGLSV--SS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
             VR  +    + I +   +G +   S     +  N    P +  ++       I +  +
Sbjct: 300 KYVRGGRTTLNLVICVVAGYGYYLV-SGAFEAMSLNGILNPFISSWIPNILYFIIGMYFM 358

Query: 355 KK 356
            +
Sbjct: 359 NR 360


>gi|189461313|ref|ZP_03010098.1| hypothetical protein BACCOP_01963 [Bacteroides coprocola DSM 17136]
 gi|189431842|gb|EDV00827.1| hypothetical protein BACCOP_01963 [Bacteroides coprocola DSM 17136]
          Length = 378

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/363 (12%), Positives = 118/363 (32%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI+     ++  +   I+ IA V  + + I+   ++   L  I+       IP 
Sbjct: 20  LKRLDRYIIVKFLGTYFFAIALIISIAVVFDVNENIDHFINNKAPLKAIVFDYYLNFIPY 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   L+ P +  A ++S   F+   
Sbjct: 80  YTNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRLMVPYMISAGIISAVTFVLGT 139

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P    T  +   + +   +  Y            +         + +     +    
Sbjct: 140 EVIPTGSVTRLKFEERYKKKKSADYARNIQLEVDSGVVAYMERYDAYSKSGYHFSLDKFE 199

Query: 180 DTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           D +      A+  + D       I+ D  +     + + I+        ++ E  +    
Sbjct: 200 DHKLVSHLTARRATYDTTMYHRWIIRDYMIREMRGMREYITRGDRLDSIIKMEPQDFLIT 259

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        L              ++ +  E+H+R+       I   I +      + 
Sbjct: 260 RGQQETMTSPQLKEYISKQKQRGFANIKEFEVEYHRRIAMSFAAFILTSIGLSL----SS 315

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL-LMIKKK 357
            + +  +             +  F  I      N   +P + +++  I  +F+ + + +K
Sbjct: 316 RKVKGGMGLHLGIGLGLSFSYILFQTISSTFAINGNMMPAIAVWIPNILYLFIAIYLYRK 375

Query: 358 YTK 360
             K
Sbjct: 376 APK 378


>gi|189501496|ref|YP_001957213.1| permease YjgP/YjgQ family protein [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|189496937|gb|ACE05484.1| permease YjgP/YjgQ family protein [Candidatus Amoebophilus
           asiaticus 5a2]
          Length = 357

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 118/357 (33%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    SFL     I+ I  +I I ++         S   +       +P +
Sbjct: 1   MKLLDRYILKKFLFSFLFILCLIILIITLIDITEKNEYFIRHKLSFREIADYYYNFLPFM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             MV+P    + T  V + + + TE++ I + G S +  + P L  A  L+IF F+    
Sbjct: 61  TNMVSPITIFITTIFVTSRLAQRTEIIAILSGGVSFVRFLVPYLIGATFLAIFNFMLIGW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I             +   +   S           D         + N     + +   RD
Sbjct: 121 ILADANKKRVAFEIEYVDSPYRSSSRNIHIKLSTDTYLYVGYYRSYNGLGTDVTLETIRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +   A++     +     L D    +   + + I+  K    TL     + S    
Sbjct: 181 NRLMEKISAKAIRWVEESGQWQLKDWICRKIDGLDEHITSGKAMDLTLNLHPEDFSINPK 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                 L+ L            + L  + +E + R       +I  L+ +V + +++   
Sbjct: 241 LHEMLTLTELDKHIQKLREKGTDNLNFFLTEKYVRYMSPFAAIILTLMGVVVSARKSRGG 300

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              +I   FI   I    F       +    N      +   +F I ++ L  +  K
Sbjct: 301 VGLQIALGFILALIYIAFFLFARGAANVKGNNLLLTIWMPNIVFSIITLILYKLTPK 357


>gi|29346244|ref|NP_809747.1| hypothetical protein BT_0834 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253568323|ref|ZP_04845734.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385619|ref|ZP_06995177.1| membrane protein [Bacteroides sp. 1_1_14]
 gi|29338139|gb|AAO75941.1| putative permease [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842396|gb|EES70476.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298261760|gb|EFI04626.1| membrane protein [Bacteroides sp. 1_1_14]
          Length = 365

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 119/362 (32%), Gaps = 7/362 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  + YI++    +++ +   I+ IA V    ++++ +       + I+ +     IP  
Sbjct: 8   KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWDKIIFEYYMNFIPYF 67

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ + +TG S   +++P +  A +++   F+  + 
Sbjct: 68  SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIAAATFMMSSF 127

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I PK   T      K       + +           +    +  +   T     +    D
Sbjct: 128 IIPKGSVTRLNFEDKYIKPKKVNSVRNVQLEVDSGVIAYIDNYNDGMKTGNRFSLDKFVD 187

Query: 181 TQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +      A+  + D        ++D  V     + + I+        +  + ++   + 
Sbjct: 188 KKLVSHLTARRITYDTTTVNKWTIHDYMVRELDGLKEKITKGDRIDSIINMDPSDFLIMK 247

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +        L              ++ +  E+HKR+       I  +I +      +  
Sbjct: 248 NQQEMLTSPELSEYIEKQKRRGFANIKEFEIEYHKRIAMSFASFILTIIGVSL----SSR 303

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKKY 358
           + +  +             +  F  I      N    P + +++   + +     + +K 
Sbjct: 304 KTKGGMGLHLGIGLGLSFSYILFQTITSTFAINGNVPPAIAVWIPNILYAGIAFYLYQKA 363

Query: 359 TK 360
            K
Sbjct: 364 PK 365


>gi|254521231|ref|ZP_05133286.1| putative YjgP/YjgQ family permease [Stenotrophomonas sp. SKA14]
 gi|219718822|gb|EED37347.1| putative YjgP/YjgQ family permease [Stenotrophomonas sp. SKA14]
          Length = 363

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 109/363 (30%), Gaps = 11/363 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+LY+ R +  + L++   +V +  V+        +  +  +L        Y +P    
Sbjct: 2   RFDLYLGRTVFTTVLLTWAVLVGLDVVMAFSGEFKDIGKNGYTLGHAAAWVLYTVPRRAY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +     L  +   +EL  +   G SR  L   V     LL+  +  S   + 
Sbjct: 62  TMFPTAAVIGALMGLGQLAATSELTALRALGLSRRRLSVSVAIALSLLTAVMVFSAETLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY--------IKISKYNPNNTLQGIF 174
           P  +     L A A+     +    +  +  + D +          +        L+ + 
Sbjct: 122 PWGQDRADALKASAKWGRDIATTRYSGLWAREGDTFLSAAGGEEQLVGDKGTRLILRDVR 181

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +    +            + + DR   +L           S     +  + +  + ++  
Sbjct: 182 LYRIAEDGQIASITHA-ATAEHDRDGWVLTGVRRDTFGERSATRQEVAREPWNSRLDAGA 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +  + K  +  ++ L   +             +   +  R    L  +   L ++  A 
Sbjct: 241 LAAGIAKPRNLRITEL-RASIEYRERNGLDARDFEDIYWSRWFYPLNVLALCLAAVPFAF 299

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                    K   + I  ++ F +   F            Y     L    + ++  L+ 
Sbjct: 300 GSLRSGGMGKRLFLGILFALGFWLLQLFFG-RMAGALKFDYRIAYALPPIVMLAVSGLLF 358

Query: 355 KKK 357
           ++K
Sbjct: 359 RRK 361


>gi|134095576|ref|YP_001100651.1| hypothetical protein HEAR2399 [Herminiimonas arsenicoxydans]
 gi|133739479|emb|CAL62530.1| putative permease [Herminiimonas arsenicoxydans]
          Length = 382

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/382 (13%), Positives = 115/382 (30%), Gaps = 26/382 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y    IGRS +   +  + +     ++  +  V      +   L      +P  
Sbjct: 1   MKILQKYFAAEIGRSVIFVLIAFLALFGFFDLIAELKAVGHGGYKIQHALLFVLLSMPGY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    + T   L+     +E  I+  +  S       ++ + ++ +I  F+    
Sbjct: 61  LYELMPIAALIGTIWTLSQFAARSEFTIMRASSMSTGMAGLMLIKIGLVFAIVTFVVGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----------LYIKISKYNPNNT 169
           + P   +  +++    Q           L+ +                ++ +    P+  
Sbjct: 121 VVPASSNMAEKIRTLNQGGSLSQEFRSGLWTKDMIRSNGKDGEAIGSRFLNVRTVQPDGQ 180

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-----------SPISKDI 218
           L  + I +             + +        +L++G                + I+  I
Sbjct: 181 LTDLKIYEFNRNFHLTALITAARADYQGDNVWLLSNGSQAEFGETELMGAAVATDITTAI 240

Query: 219 SIMKFKSYTL--QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
           S   F S  L  +      S         +   L+N               Y     K++
Sbjct: 241 STRNFASKPLISEVTPEILSVGFSDPAKMSAYDLVN-YTQYLAENNRETARYEIALWKKV 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYY 335
                  +   +++  A                I + +SF  +   FS++       P+ 
Sbjct: 300 VYPFAVFVMMALALPFAYLHFRSGGVSLKIFTGIMIGVSFQLINSLFSHLGLLNTWPPFA 359

Query: 336 IPILYLFLFCISSIFLLMIKKK 357
             IL   LF +++I  L+  ++
Sbjct: 360 TAILPSLLFLLAAIGALLWVER 381


>gi|284929068|ref|YP_003421590.1| putative permease [cyanobacterium UCYN-A]
 gi|284809527|gb|ADB95232.1| predicted permease [cyanobacterium UCYN-A]
          Length = 402

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/372 (13%), Positives = 129/372 (34%), Gaps = 20/372 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPTVL 61
             + YIL  +      S   +  +   I  L  + N V  S   L   L+I    IP   
Sbjct: 31  LIDRYILSQLIGPLAFSVGLVSILGVAIGYLSDLSNKVVESDLPLIQALEIIFLKIPEFT 90

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    + T      ++ ++EL+ +   G S   L+ P   ++++++   FI   +I
Sbjct: 91  AYALPISMMLSTLLTYGRLSGDSELIALRVCGASLYRLVMPAFIISLIMTGITFIFSELI 150

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI------------KISKYNPNNT 169
            P     +  +  +        +  +++F+   + + +              ++      
Sbjct: 151 VPAANYRVTSILVEHLQEERPYWQNKDIFYPDYEKVVLPDGSTEKQLKHLFFAEKFDGQK 210

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           L+ + +++  + + ++I  + S + +   +     +G +++ +P S       FK   L 
Sbjct: 211 LETLTVLEWLEKKLNRIVVSDSAAWNAQDETWDFFNGTIYQLAPDSSYQGTYSFKHRQLP 270

Query: 230 TESANSSTIV--LKANDQNLSFLLNPNPNNP-NYRPELLETYRSEFHKRLTQWLFPVIFG 286
              +    I       + N+                + L T++    +++      ++FG
Sbjct: 271 LAKSAFEFIQEGRDPYEMNIFQAQKYMKILRVMEDEQKLRTFQVRVQQKIAFPFICIVFG 330

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
           +I          + +        +S+ I F +++   ++I  +       P +  +L   
Sbjct: 331 VIGSALGTSPQYINR---AMGFGLSVVIVF-IYYLLGFLIGSLGLIGVVSPFMAAWLPNA 386

Query: 347 SSIFLLMIKKKY 358
             + + +    +
Sbjct: 387 IGLGIGLYLLYW 398


>gi|332753041|gb|EGJ83425.1| hypothetical protein SF434370_3220 [Shigella flexneri 4343-70]
 gi|332998924|gb|EGK18515.1| hypothetical protein SFVA6_3889 [Shigella flexneri VA-6]
 gi|333000167|gb|EGK19750.1| hypothetical protein SFK218_4002 [Shigella flexneri K-218]
          Length = 359

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 125/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDGVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  +L+     +     + +  +   ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 357


>gi|167753885|ref|ZP_02426012.1| hypothetical protein ALIPUT_02170 [Alistipes putredinis DSM 17216]
 gi|167658510|gb|EDS02640.1| hypothetical protein ALIPUT_02170 [Alistipes putredinis DSM 17216]
          Length = 372

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/364 (11%), Positives = 120/364 (32%), Gaps = 10/364 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  + YIL     ++  +   I+ +  +   +++I+  + +   L  I+       IP  
Sbjct: 14  KILDRYILGKFLSTYFFAIAMIIVVVVIFDYVEKIDNFTETKAPLKAIIFDYYLNFIPFF 73

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +   +     +      + M   TE++ + + G S   L+ P    A++++         
Sbjct: 74  INQFSGLFTFIAVIFFTSKMAYQTEIVAMLSGGMSFRRLMWPYFLGALIIASLSLGLNLW 133

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  + +      +          ++N++ +++   +  I  Y+  +  Q  F      
Sbjct: 134 LIPVSQRSCVAFENQYIPRKARFQYDKNIYRQIEPGTFAYIRNYSKESN-QASFFSLEEY 192

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS---KDISIMKFKSYTLQTESANSST 237
                    ++  +  + +    +      ++  S   +  +  +     +  +      
Sbjct: 193 ESGAMTASLEAAEVRFNPETKRWSARRYTTRTFDSLGVETFTQHRNLDTLINLDVNELGR 252

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   N+  L        +   + +   + E H R    +   I  LI +      +
Sbjct: 253 TDQLIKTMNIVELNQFLEQQRSKGSDSINIIQVEQHARYAYPVGTFILTLIGVSL---SS 309

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL-LMIKK 356
              +      I I +++ F  +  F     +  ++    P + +++  I  + + + + +
Sbjct: 310 RKVRGGTGLHIGIGIALCFS-YILFIRFFEEFAKSGTLPPWIAVWIPNILYLCIAVYLYR 368

Query: 357 KYTK 360
           K  K
Sbjct: 369 KAPK 372


>gi|300931863|ref|ZP_07147160.1| conserved hypothetical protein [Escherichia coli MS 187-1]
 gi|331664593|ref|ZP_08365499.1| putative permease [Escherichia coli TA143]
 gi|300460286|gb|EFK23779.1| conserved hypothetical protein [Escherichia coli MS 187-1]
 gi|331058524|gb|EGI30505.1| putative permease [Escherichia coli TA143]
          Length = 359

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 124/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S N   + +
Sbjct: 181 DLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 357


>gi|161524006|ref|YP_001579018.1| permease YjgP/YjgQ family protein [Burkholderia multivorans ATCC
           17616]
 gi|189351233|ref|YP_001946861.1| YjgP/YjgQ-like transporter [Burkholderia multivorans ATCC 17616]
 gi|221199307|ref|ZP_03572351.1| putative membrane protein [Burkholderia multivorans CGD2M]
 gi|221205791|ref|ZP_03578806.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221211524|ref|ZP_03584503.1| putative membrane protein [Burkholderia multivorans CGD1]
 gi|160341435|gb|ABX14521.1| permease YjgP/YjgQ family protein [Burkholderia multivorans ATCC
           17616]
 gi|189335255|dbj|BAG44325.1| YjgP/YjgQ-like transporter [Burkholderia multivorans ATCC 17616]
 gi|221168885|gb|EEE01353.1| putative membrane protein [Burkholderia multivorans CGD1]
 gi|221174629|gb|EEE07061.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221180592|gb|EEE12995.1| putative membrane protein [Burkholderia multivorans CGD2M]
          Length = 364

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 122/362 (33%), Gaps = 16/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEVDPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIIVLITFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      + + A+ Q     S L    F     +  +   +    +  +   +  +    
Sbjct: 122 PWSNQQSRLIKARFQQRDEISLLAPGQFRESASNHRVFFIEKMTPDQSKVQNVFVTSTEN 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + +     + ++L DG  +  +P   +  IM+F+ Y ++  S     +
Sbjct: 182 GKVNVVVSQTGHTETTKDGDRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSKPVVNV 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRA 297
              ++      L NP  +N            +EF  R    L  +   ++ I  A     
Sbjct: 242 PTTSSTPTPELLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIPLAYQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    + I          +  L++ +  I +    +  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVALHVVVAAIVAFIFWLRVRN 350

Query: 358 YT 359
             
Sbjct: 351 RP 352


>gi|91212393|ref|YP_542379.1| hypothetical protein UTI89_C3401 [Escherichia coli UTI89]
 gi|218560054|ref|YP_002392967.1| hypothetical protein ECS88_3361 [Escherichia coli S88]
 gi|237706274|ref|ZP_04536755.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91073967|gb|ABE08848.1| hypothetical protein UTI89_C3401 [Escherichia coli UTI89]
 gi|218366823|emb|CAR04593.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli S88]
 gi|226899314|gb|EEH85573.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 386

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 128/360 (35%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A      + +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +  +   ++     S N   + +
Sbjct: 208 DLSLESYIYARSATIEDDKTWILHGVNYKKWLNGKETLETLDNLAWQSAFTSMNLEELSM 267

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    Y     ++L Q +  +   L+++      ++ R
Sbjct: 268 PGNTFSVRQL-NHYIHYLQDTGQPSSEYHLALWEKLGQPILTLAMILLAVPFTF--SVPR 324

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 325 SPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 384


>gi|294788100|ref|ZP_06753344.1| permease, YjgP/YjgQ family [Simonsiella muelleri ATCC 29453]
 gi|294484393|gb|EFG32076.1| permease, YjgP/YjgQ family [Simonsiella muelleri ATCC 29453]
          Length = 355

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/360 (12%), Positives = 123/360 (34%), Gaps = 5/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+++ +      + L ++ +   I +L  I  V     +     K     +P  
Sbjct: 1   MKLLTKYLIKRLTVMSCYALLAVLALYSFIDLLSEIGNVGKGNYTGWTAFKYIIMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ ++ ++EL +I  +G S   +I+ +L  + + ++   +    
Sbjct: 61  AYQLMPLATLIGGLLALSQLSSSSELAVIKTSGLSTADIIRIILKFSAIFALATILLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+       +   A+ +   + +   L+ R  +++    +    N          +  
Sbjct: 121 LAPELGRRADAMKTTAKESSITASVT-GLWLRQGENIVNIAAMLPDNTLTNIRIWRYNPQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +   A+   +   +   +L + ++ + +    +I  +K  ++         + +V+
Sbjct: 180 FELTEAIIAEKAQVHDGK--WVLQNAKISQLTNKHINIQHIKQMNWQTNINQNLLNVLVV 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    + S L            +    Y   +  +L   +  ++  L+++      A   
Sbjct: 238 KPEQMSFSALTR-YIKYLKKNQQQTSAYDVVWWNKLVYPIATMVMSLVALAFTPNSARHS 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F           ++   P +   + L     +   + +I K+ T+
Sbjct: 297 NMGLKLFSGICLGLLFFFTGRLFGFTTQLYGVPAFFSAI-LPTATFALWAVYLIHKQETR 355


>gi|158337152|ref|YP_001518327.1| permease YjgP/YjgQ [Acaryochloris marina MBIC11017]
 gi|158307393|gb|ABW29010.1| permease YjgP/YjgQ, putative [Acaryochloris marina MBIC11017]
          Length = 390

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 119/358 (33%), Gaps = 7/358 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + Y+ R +   FL   +    I      +   +  VS +   + I L I    +P  +
Sbjct: 15  LVDRYLFRQLLPPFLWGMVAFSSIGVSAAVLFDLLGQVSEARLPIAIALSILTLQLPYFV 74

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L+ +  + ELL + + G     LI   L  ++L  +F+F     +
Sbjct: 75  SLAIPMSVLLACLLTLSRLQSDGELLALQSAGLHLNRLIGSCLGFSLLACLFMFGLTESL 134

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQGIFIVD 177
            P  ++    L  +   A  FS    ++ +           +  ++     TL GI ++D
Sbjct: 135 VPVSQAHSHHLLRQTLQAGQFSLQGRHIVYPDIGPNQELRRLFYAQTGQGQTLSGITVID 194

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                  ++  AQS + + +R   I  DG ++       +  I++F    LQ     S T
Sbjct: 195 WTLPNNQQVLIAQSATWNAERNIWIFKDGSIYAIGTDGAEKHIIEFSKQELQLPPQLSLT 254

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPEL--LETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                 +                      +     + H+++      +IFGL+       
Sbjct: 255 DSDINPNGVTLAQSQQLLTKLRQTGRPTQIRALAIQIHRKIALPFTVIIFGLVGSTLGIS 314

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +  +          I +   + + +           +P++       +  +  + LL+
Sbjct: 315 QRRLAVSNGFGISLILVLGQYILIFIADAWGQLGIISPWFGAWTPNLVTGLIGVSLLL 372


>gi|153806356|ref|ZP_01959024.1| hypothetical protein BACCAC_00617 [Bacteroides caccae ATCC 43185]
 gi|149131033|gb|EDM22239.1| hypothetical protein BACCAC_00617 [Bacteroides caccae ATCC 43185]
          Length = 365

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 121/362 (33%), Gaps = 7/362 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  + YI++    +++ +   I+ IA V    ++++ +       + I+ +     IP  
Sbjct: 8   KRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWSKIIFEYYMNFIPYF 67

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F+  + 
Sbjct: 68  SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALTTFMLSSY 127

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK   T      +       +             +    +  N   T     +    D
Sbjct: 128 VIPKGSVTRLNFEDRYIKPKKQNTARNVQLEVDSGVIAYIDNYNNAMKTGNRFSLDKFVD 187

Query: 181 TQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +      A+  + D        ++D  V     + + I+        +  E ++   + 
Sbjct: 188 KKLVSHLTARRITYDTATVHKWTIHDYMVRELDGLKEKITKGDKIDSIINMEPSDFLIMK 247

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +        L +            ++ +  E+HKR+       I  +I +      +  
Sbjct: 248 NQQEMLTSPQLSDYIEKQKRRGFANIKEFEIEYHKRIAMSFASFILTIIGVSL----SSR 303

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKKY 358
           + +  +             +  F  I      N    P++ +++   + +     + +K 
Sbjct: 304 KTKGGMGLHLGIGLGLSFSYILFQTITSTFAINGNVPPVIAVWIPNILYAGIAFFLYQKA 363

Query: 359 TK 360
            K
Sbjct: 364 PK 365


>gi|258542689|ref|YP_003188122.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256633767|dbj|BAH99742.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256636826|dbj|BAI02795.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
 gi|256639879|dbj|BAI05841.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
 gi|256642935|dbj|BAI08890.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
 gi|256645990|dbj|BAI11938.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
 gi|256649043|dbj|BAI14984.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
 gi|256652030|dbj|BAI17964.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655087|dbj|BAI21014.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
          Length = 399

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 131/362 (36%), Gaps = 12/362 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y++  +   FL++   ++    + ++L   NL+++    + I + +   L+P  L 
Sbjct: 22  TLDRYLIAQVMPPFLVALSVVMIALILERLLVLFNLLAAGNNHIGIFIGLLAALLPHYLG 81

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +    V+  M++N E+  I+++G S + + +P + L ++L +  F+    I+
Sbjct: 82  LAIPAALCVAVFTVIRRMSQNEEIDAINSSGLSLLRITRPYIQLGVILGVLSFLLYGFIQ 141

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  R   +     A        L+  +F      L I   K + + +      +     Q
Sbjct: 142 PHARYDFRSTFYIASHTGWAPRLQPRMFASPSSQLTIVADKVSQSGSDLENVFIRDLSEQ 201

Query: 183 THKIYYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSYTLQTE----SAN 234
             +   A++G I +          L +G +          S++ F   T         + 
Sbjct: 202 QERDITARNGHIRIGSDGETVEIDLTNGVIVT-DKGDGVPSLVTFDHSTRYLTHASHISP 260

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
             T      +     L+     +           RSE H R+ + L      L++   A 
Sbjct: 261 FRTRGEDERELTSPELVGRLIRHDPSISRPH--MRSEVHFRMARSLTVPFMPLLAASLAL 318

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            R   R    +   FI + + F     F + +   ++    +      +F +    LL+ 
Sbjct: 319 MRKRQRNNAGLPLAFI-IMVGFDHIIQFGHSMVATKKASLLLIWGPAVVFIVGCTLLLLY 377

Query: 355 KK 356
           K 
Sbjct: 378 KS 379


>gi|288926740|ref|ZP_06420651.1| membrane protein [Prevotella buccae D17]
 gi|288336470|gb|EFC74845.1| membrane protein [Prevotella buccae D17]
          Length = 367

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 114/364 (31%), Gaps = 9/364 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  + YI++    ++  S   I+ IA V    + ++  +        I+       IP  
Sbjct: 8   KILDWYIIKKFIGTYFFSIALIISIAIVFDFNENLSKFTQYHAPWRAIVFDYYANFIPYY 67

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ +   G S   L++P +   +L++   +     
Sbjct: 68  SNLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMISCVLIAALTYYLGAY 127

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P      +   A  +     +  +          +       N      G  +    D
Sbjct: 128 EIPHGTVIRQDFEALYRNNTKNTAADNVQLQVDKGVIAYIQHYDNNTKKGYGFKLNKFED 187

Query: 181 TQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +      A       I   +    + + +  +   + + I+    K   +  E  +   
Sbjct: 188 KKLVSDLTAMEVQYDTISDTKFHWRMRNWKQRKLQGLKEHITSGAEKDTVILMEPTDLVY 247

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +        L        +     +  Y+ E+HKR+       I  +I +      +
Sbjct: 248 SKGQQETFTSPELREYISKQIDRGSSNVVQYQVEYHKRIATSFASFILTVIGLSL---SS 304

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFLLMIKK 356
             R+      + + L++SFG +     +      N    P+L  +    + +I    + +
Sbjct: 305 RKRKGGMGLYLGLGLALSFG-YIMLQTVSATFAINAGAPPMLAAWTPNMVFAIVAYFLYR 363

Query: 357 KYTK 360
           K  K
Sbjct: 364 KAPK 367


>gi|254303140|ref|ZP_04970498.1| possible ABC superfamily ATP binding cassette transporter membrane
           protein [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148323332|gb|EDK88582.1| possible ABC superfamily ATP binding cassette transporter membrane
           protein [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 359

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 118/338 (34%), Gaps = 1/338 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  SIF+   +  
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIIFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    +K + AK         L+E  F    D+  I + + + +   + I   +  +
Sbjct: 121 IIPRSFIKLKYVGAKIAYENPVFQLKEKTFIDNLDEYSIYVDEVDSDGKAKNIIAFEKPE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            ++                +IIL + +        K   +  F    +   +     + +
Sbjct: 181 DKSKFPMVLTGEEAFWKDNSIILKESQFVSFDETGKKNLVGTFDEKRVVLTAY-FQDLNI 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K  D     +++               Y+ E  ++L      V   +I    +     + 
Sbjct: 240 KIKDVEALSIIDLIKGLKKVEATEAIRYKIEIFRKLALVFSTVPLAVIGFCLSLGHHRIS 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
           ++       I +            +    + NP+    
Sbjct: 300 KKYSFILAMIIIFAYIIFLNIGIVMATAGKLNPFIATW 337


>gi|323978946|gb|EGB74026.1| permease YjgP/YjgQ family protein [Escherichia coli TW10509]
          Length = 359

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 122/354 (34%), Gaps = 3/354 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                  + + + +    +  +  +++         P+  L L     +  L +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFMLVALSL 351


>gi|90419501|ref|ZP_01227411.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336438|gb|EAS50179.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 360

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/349 (12%), Positives = 111/349 (31%), Gaps = 10/349 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   Y  R    SFL + L +  + ++I +++                  S   +P+ + 
Sbjct: 5   TLNRYFFRLYVVSFLSTLLTVFALIYLIDLIEVSRRSRFEDLGFGATALFSLLRVPSFIG 64

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              PF     +   L ++NR  EL++   +G S   ++ P +  + L+ I      N + 
Sbjct: 65  QAFPFIVLFSSIYTLLTLNRRLELVVARASGVSIWQILLPFVVGSFLIGIVATFVYNPLT 124

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI---SKYNPNNTLQGIFIVDSR 179
              ++  + +          S  +   + R + D    I        + T+ G       
Sbjct: 125 AYTKTLSEDMQTTMTAGGDVSSSDRVPWLRQEGDGIQSILGAKTVARSGTVLGDITAFVM 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +        +    L+ +  +L      R + +       +                +
Sbjct: 185 NDEGIVKERIDAARAVLNDEYWLLE---KPRVTRVGYRPEFPQEYKLPTSLRPEYVEQRI 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                 ++  L +   +         + +R ++H  + Q    +   L++   A      
Sbjct: 242 ADPEAISIWQLGSK-IDVAASLGFNTDAFRMQYHTLVAQPALFIAMTLLAATVA--TRFS 298

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           R  +    I   +   F ++   +++   +  N    P++  +   +++
Sbjct: 299 RTGQSGRTIAGGVMAGFVLYVV-TFLAKALGSNDVVPPVMAAWFPVLAA 346


>gi|329954892|ref|ZP_08295909.1| permease, YjgP/YjgQ family [Bacteroides clarus YIT 12056]
 gi|328526996|gb|EGF54007.1| permease, YjgP/YjgQ family [Bacteroides clarus YIT 12056]
          Length = 380

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 119/363 (32%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S       I+       IP 
Sbjct: 22  LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWKAIIFDYYMNFIPY 81

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A +++I  F   +
Sbjct: 82  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAITTFCLGS 141

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + PK   T      K       +             +       + + T     +   +
Sbjct: 142 YVIPKGSVTRLNFEDKYYKPRKSTTARNIQLEVDSGVIAYIERFEDYSKTGYRFSLDKFK 201

Query: 180 DTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           D Q      A+S + D        + D  +     + + I   +     L  E A+   +
Sbjct: 202 DKQLVSHLTARSITYDTAAVHKWKVKDYMIREMDGMRESIVKGERLDTILFMEPADFLIM 261

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        L              ++ +  E+HKR+       I  LI +      + 
Sbjct: 262 KNQQEMLTSPQLSEYIDRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSL----SS 317

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKK 357
            + +  +             +  F  I      N    P++ +++   + +     + KK
Sbjct: 318 KKTKGGMGLHLGIGLGLSFSYILFQTIASTFAVNGNVPPVIAVWIPNLLYAFIAFYLYKK 377

Query: 358 YTK 360
             K
Sbjct: 378 APK 380


>gi|300725026|ref|YP_003714352.1| putative transmembrane protein, transport [Xenorhabdus nematophila
           ATCC 19061]
 gi|297631569|emb|CBJ92278.1| putative transmembrane protein, transport [Xenorhabdus nematophila
           ATCC 19061]
          Length = 366

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 136/354 (38%), Gaps = 19/354 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N+++ + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVEVLGAAVEGNIPANLVISLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +   +E+ ++   G  +  L+K  L LA+L SI    +     
Sbjct: 62  LILPLSLFLGVLMTFSKLYTESEITVMHACGLGKSVLVKSALILALLTSILAAANVIWFI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+      Q+ A A+   + + + E  F    D   +        NT + +F+   R T 
Sbjct: 122 PESSKYQAQVLADAKTNPSLAAIMEGQFKPSRDGNMVLYIGNVKGNTFENVFLAQLRSTN 181

Query: 183 --THKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                + +A  G +       Q  +L+ G  +  + + +D  I +F +Y        +  
Sbjct: 182 DQRPSVIFADGGHMEERPNGNQVAVLHQGTRYEGTALLRDFRITEFTNYQAVIGHQRADI 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K   ++L  L +   ++           R+EFH RLT  L  +I  L+        A
Sbjct: 242 DNNKVEQKSLEQLWHATDDDS----------RAEFHWRLTLILSVLIMALM---VVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +  ++ +I  +  ++ +   +F+     +          P+ +++L   S + L
Sbjct: 289 VNPRQGRILSMLPAMLLY-LIFFMLQSSLRSNGSKGKLDPMFWMWLVNGSYLAL 341


>gi|89094619|ref|ZP_01167556.1| hypothetical protein MED92_00300 [Oceanospirillum sp. MED92]
 gi|89081089|gb|EAR60324.1| hypothetical protein MED92_00300 [Oceanospirillum sp. MED92]
          Length = 362

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 113/365 (30%), Gaps = 14/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI R +   FL+  L +  +  +  +++ +  V     S    ++     +P  
Sbjct: 1   MSLIDRYIARHVLGGFLVVLLVVAGLDMLFALVEELKDV-QGNYSFAAAVEYVLLTLPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     L  +  ++EL ++   G S + +I  V+   +L+          
Sbjct: 60  LYEFIPLSSLIGCLLGLGILASSSELTVMRAAGISTLGIIISVMKPVLLIIALALGLGEF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +             +    ++ R D       +     +         + D
Sbjct: 120 VVPHTEQRAQSHRQVMLTGGGAIHDASRVWHRDDMTFLHINAVIPDGSVRGVTRYEFNED 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD---------ISIMKFKSYTLQTE 231
               +  +A+ G  +  +   +L D +  R                 + ++ + +     
Sbjct: 180 LTLKRSSFAEVGRYEDGK--WLLTDIQESRFPDAKGREQRATSSIVTTEIEQEIWESGLT 237

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                 ++++  + ++S L+    N    +    E YR  F  +L   L      L+++ 
Sbjct: 238 PDLLKVVMVQPTNLSISGLVQ-YSNYLTDQGLASEQYRIAFWNKLLLPLAIFALVLVAVS 296

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                       +     I + + F +          +     ++ ++ + +     +  
Sbjct: 297 FIFGPLRSVTLGQRLITGIIVGLVFKLSQDILGPTSAVFGFYPFVAVM-IPILICIGVGF 355

Query: 352 LMIKK 356
            ++ +
Sbjct: 356 WLLNR 360


>gi|84622419|ref|YP_449791.1| hypothetical protein XOO_0762 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188578606|ref|YP_001915535.1| putative permease, YjgP/YjgQ family [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84366359|dbj|BAE67517.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188523058|gb|ACD61003.1| putative permease, YjgP/YjgQ family [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 368

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 104/363 (28%), Gaps = 11/363 (3%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V         +   + +    +    Y +P     +
Sbjct: 9   DWYVGRVVLSTVLLTWAVLLGLDLVNAFASEAKDIGQGSYTFGHAVAYVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   I P 
Sbjct: 69  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPW 128

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI--------SKYNPNNTLQGIFIV 176
            ++    L A A+     +       +  + D ++             +    L  + + 
Sbjct: 129 AQNQADTLKASARYNSDMAASLYAGLWAREGDTFLNALSGEEKLLDGGDTALDLHDVRLY 188

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
               +   +     S +   D     L           S          +  Q   A  +
Sbjct: 189 HLDSSGRMQQLTYASVAEHRDG-RWTLRQVRRDTFQERSVQRETFPELPWQSQLNPAALA 247

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + K  + +   L   +    +        Y  ++  R    L  +   + +I  +   
Sbjct: 248 AGLAKPRNLSAHDL-EQSIEYRSRNGLDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGS 306

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  K   + I  ++ F +   F            Y     L    +  +   + ++
Sbjct: 307 LRSGGLGKRLFLGILFALGFWLLQLFFG-RMAGALKLDYRIAYALPPMVMLGVSAWLFRR 365

Query: 357 KYT 359
           + +
Sbjct: 366 RSS 368


>gi|288928388|ref|ZP_06422235.1| membrane protein [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331222|gb|EFC69806.1| membrane protein [Prevotella sp. oral taxon 317 str. F0108]
          Length = 390

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 118/361 (32%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI+R    +++ S L I+ IA V  + + +   +     L  I+       +P 
Sbjct: 30  LKILDWYIIRKFIGTYVFSILLIISIAIVFDVNENLAKFTQFHAPLKAIVFDYYANFVPY 89

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +   +E++ +   G S   L++P +   +L+S   F    
Sbjct: 90  FANLFSPLFVFIAVIFFTSKLAGTSEIISMLAAGVSFNRLMRPYMVSCLLISCLSFYLSG 149

Query: 120 IIEPK---CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + P     R   + +   ++   +   ++  +   +   +     K             
Sbjct: 150 YVIPHGTVIRQNFESMYKNSKKNTSAENVQLQVDRGVIAYIQHYDDKTKRGYGFSLDKFE 209

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + +          Q  +I   +    +++  +     + + I+    +   +  E A+  
Sbjct: 210 NKKLVSHMTASEIQYDTISDSKYHWQVSNWRIREMKALREKITYGDKRDTLIMMEPADLV 269

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +        L +            +  Y  E+HKR+       I   I +      
Sbjct: 270 FSKGQQETFTNPELSSYISKQIGRGSSNVVQYEVEYHKRIAASFASFILTTIGLSL---S 326

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +  R+      + I L++SFG +     +      N    P+L  ++  +    +     
Sbjct: 327 SRKRKGGMGLYLGIGLALSFG-YILLQTVSATFAVNANTPPMLAAWIPNLLFAVVAYFCY 385

Query: 357 K 357
           +
Sbjct: 386 R 386


>gi|254303141|ref|ZP_04970499.1| hypothetical protein FNP_0781 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323333|gb|EDK88583.1| hypothetical protein FNP_0781 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 363

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 117/362 (32%), Gaps = 11/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++YI +   + FLM+ +  + +  + Q  + I  ++    +   +      L+P + 
Sbjct: 3   KKMDMYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLAGGEIFDYILNLLPKMF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     ++ M  N E++ +  +G   + +++  L +A ++S+F+F   N I
Sbjct: 63  VETAPLSVLLAGLITVSIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLFVFFINNSI 122

Query: 122 EPKCRSTIKQLSA-----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
             K  + I            +L  T               L  KI++         I   
Sbjct: 123 YTKSLAKINFYRRGEVDETLKLPTTKENAFFINNTDGYLYLMGKINRETGVAENIEIVKF 182

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           ++  ++  +I  A+S   D +    I ++  ++               +      S    
Sbjct: 183 ENEISKPKEIITAKSAKFDTEENKWIFSNANIYNVDTKETVTKTEYKSNLYKDDPSNFIR 242

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                     +  L        N   E    Y +E  KR +      I   I +      
Sbjct: 243 ASAEDPRMLTIKELKKTIKEQKNI-GEDTRIYLAELAKRYSFPFASFIVAFIGLSV--SS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
             VR  +    + I +   +G +   S     +  N    P +  ++       I +  +
Sbjct: 300 KYVRGGRTTMNLVICVVAGYGYYLV-SGAFEAMSLNGILNPFIASWIPNILYLIIGIYFM 358

Query: 355 KK 356
            +
Sbjct: 359 NR 360


>gi|301325677|ref|ZP_07219138.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|300847532|gb|EFK75292.1| conserved hypothetical protein [Escherichia coli MS 78-1]
          Length = 359

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 121/354 (34%), Gaps = 3/354 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  + +N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLAKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                  + + + +    +  +  +++         P+  L L     +  L +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFMLVALSL 351


>gi|294012649|ref|YP_003546109.1| putative permease [Sphingobium japonicum UT26S]
 gi|292675979|dbj|BAI97497.1| putative permease [Sphingobium japonicum UT26S]
          Length = 367

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 116/358 (32%), Gaps = 7/358 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
           +    Y+ R            +V +   + +L     + +        L        P +
Sbjct: 10  RQLGWYMARLFLTRTFAVLAMLVAVLQTLDLLGESGDILAYAGNGDAQLWHYVALRAPQI 69

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   + T  +L S+N+N+E++ +   G S   ++ P+L  A+ +++  +     
Sbjct: 70  VARFLPFSVLLGTLIMLASLNQNSEIISMKAAGLSAHQILAPLLAAALGVALISYAFNER 129

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVD 177
           I  +  + +    A     L      +   +  D +       ++       L+ + I +
Sbjct: 130 IVARSTARLSAWQAVDYGPLPPETGVKASPWVRDGNNLVTAAIVAGRGTAVQLRKVEIFN 189

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +     I  A  G  D   ++ +L D    +          +    +         + 
Sbjct: 190 RINNTLTTIVQAPRGHYDASTRSWVLEDA--RQFDVARGTERQIGTVRFGRDIRPDQFTL 247

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +  +    S L     ++ +               +L+  L  ++  ++  VAA   A
Sbjct: 248 AKVDPDALTFSQL-QAAISDLHDAGRPTAELEGSLWHKLSGPLSALLMPILGSVAAFGLA 306

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              Q      + ++L  ++ V   FS  +  +   P ++     FL  +     ++ +
Sbjct: 307 RSGQLFVRAVLGMALGFAYFVADNFSLAMGNLGAYPPFLAAWAPFLLFLLVGETVLFR 364


>gi|37681090|ref|NP_935699.1| permease [Vibrio vulnificus YJ016]
 gi|37199840|dbj|BAC95670.1| predicted permease [Vibrio vulnificus YJ016]
          Length = 366

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 119/360 (33%), Gaps = 23/360 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    Q +  +   S      ++++ I    +P++  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFLSQQFISVLADASDGDIPASLIMSIVALNMPSMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     LI+  L+LA++ S     +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLIQAALYLAVITSGVAAFNSLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     ++QL+ +     +   L++  F    D   +       +  L  +F+       
Sbjct: 122 PWSMDRVEQLTEQVAAENSVDLLKKGQFQFTPDRSSVVFIDDIKDKQLSNVFVAQLMPRD 181

Query: 183 THKIYYA-----QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +           +   +   RQ I +  G  +   P   +  I +F+ Y       +   
Sbjct: 182 SILPSVMFANGGEVKELSDGRQIISMKQGTRYEGVPTRVEYMITEFEQYDGLIGQRSVKQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +      L+                 ++E   R++ +   V   L++++     A
Sbjct: 242 RGRDWDAIPTLELI----------GNPDPEAQAELQWRVSLF---VCIPLLTMLVIPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-----NPYYIPILYLFLFCISSIFLL 352
           +  ++ +   +  ++ I    F   S     +E+     +    PI  L L        +
Sbjct: 289 VNPRQGRFAKMGPAILIYLAYFLSISATKSALEEGDISASIGMWPINGLLLLVAIMANFM 348


>gi|197287278|ref|YP_002153150.1| permease [Proteus mirabilis HI4320]
 gi|227357022|ref|ZP_03841393.1| inner membrane protein [Proteus mirabilis ATCC 29906]
 gi|194684765|emb|CAR46795.1| putative permease [Proteus mirabilis HI4320]
 gi|227162825|gb|EEI47785.1| inner membrane protein [Proteus mirabilis ATCC 29906]
          Length = 359

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 111/337 (32%), Gaps = 2/337 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I +S LM+   +V ++ +I+ + ++  V     +       +   I   + +
Sbjct: 5   LDKYIGRTILQSILMTLFLLVSLSGIIKFVDQLRKVGQGDFTTLDAGIYAVLNILKDVQI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++   +EL+++  +G +R+ +   V+  AI L +   +      P
Sbjct: 65  FFPMAALLGALLGLGALATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTVLIGEWGAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+  +  +       ++ +  +         + N            + + 
Sbjct: 125 QGEQYARNYRAEKIMGNSLVSTNRGMWAKDGNQFIYINRIKSQNEMQGITLYNFDNNRKL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKS-PISKDISIMKFKSYTLQTESANSSTIVLKA 242
             + YA S + D D++  +L   E    + P            +  +      S + L  
Sbjct: 185 ETVRYASSATYDPDKKVWLLKQVEQSDLTSPQKITGKKQVSLEWQTRLTPEKLSVVALDP 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++S L            +    Y   F K++   +   +  L+++            
Sbjct: 245 DALSISGLYQ-YVKYLKQSGQESANYELNFWKKIFAPISVAVMMLMALSFIFGPLRTVPM 303

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
                  I+    F +    S  +  +   P  +  L
Sbjct: 304 GLRVVTGIAFGFLFYIVNEVSGRLSLVYGIPAVVAAL 340


>gi|237741964|ref|ZP_04572445.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|229429612|gb|EEO39824.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
          Length = 363

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 118/362 (32%), Gaps = 11/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++YI +   + FLM+ +  + +  + Q  + I  ++    +   +      L+P + 
Sbjct: 3   KKMDMYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLAGGEIFDYILNLLPKMF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     ++ M  N E++ +  +G   + +++  L +A ++S+ +F   N I
Sbjct: 63  VETAPLSVLLAGLITVSIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFINNSI 122

Query: 122 EPKCRSTIKQLSA-----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
             K  + I            +L  T               L  KI++         +   
Sbjct: 123 YTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLYLMGKINRETGMAENIEVIKF 182

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +++ ++  +I  A+S   D+D    I ++  ++                      S    
Sbjct: 183 ETQISKPKEIITAKSAKFDIDENKWIFSNVNIYNVDTKETVTKTEYKSDLYKDDPSNFIR 242

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                     +  L        N   E    Y +E  KR +      I   I + A    
Sbjct: 243 ASAEDPRMLTIKELKKTIKEQKNI-GEDTRIYLAELAKRYSFPFASFIVAFIGLSA--SS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
             VR  +    + I +   +G +   S     +  N    P +  ++       I +  +
Sbjct: 300 KYVRGGRTTMNLVICVVAGYGYYLV-SGAFEAMSLNGIVNPFVASWIPNILYLIIGIYFM 358

Query: 355 KK 356
            +
Sbjct: 359 NR 360


>gi|86133725|ref|ZP_01052307.1| predicted permease YjgP/YjgQ family [Polaribacter sp. MED152]
 gi|85820588|gb|EAQ41735.1| predicted permease YjgP/YjgQ family [Polaribacter sp. MED152]
          Length = 363

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/363 (14%), Positives = 114/363 (31%), Gaps = 6/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILL-KISGYLIP 58
           MK  + YIL+    +FL + L ++ IA  I I ++I+            ++ +     I 
Sbjct: 1   MKILDWYILKRFLVTFLFTLLILIPIAIAIDIAEKIDNFLEHQDLGFLQIVDEYYINFII 60

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
                  P    +      + ++ NTE++ I+N   S    + P    A L+++      
Sbjct: 61  YYANTFMPLALFIAVILFTSKLSNNTEIIAINNAKISFTRFLFPYFIGATLITLLSLAMN 120

Query: 119 NIIEP---KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           + + P   K R   +    K +          +   +L D  YI I  +N  +     F 
Sbjct: 121 HFVVPSSSKIRKKFELTYIKNKRQNQEFKYISDFSLQLTDSTYIFIRNFNTQSNAGYDFT 180

Query: 176 -VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                         A +   +       L +  + +       I               +
Sbjct: 181 SEVYDGLTMKSKLVADNIRYNDKDSTFALQNWRLRKIYDDKDSIFSGNKIDTVFNFTPRD 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                  + +     LL     +     + L  Y  EFHKR +  +   +  +I++  A 
Sbjct: 241 LIYKSALSQEMPSDELLKFIEISEKRGVKNLNAYLVEFHKRTSLPIASYVLTIIAVALAF 300

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           ++        +      + I   +      +      N +    +    F   +++L + 
Sbjct: 301 RKRRGGTGVNLAIGVGMMFIYVFLLKISEVLGAVAGVNSFIYVWMPNIFFGSIALYLYLN 360

Query: 355 KKK 357
            +K
Sbjct: 361 ARK 363


>gi|226946454|ref|YP_002801527.1| YjgP/YjgQ family permease [Azotobacter vinelandii DJ]
 gi|226721381|gb|ACO80552.1| permease YjgP/YjgQ family [Azotobacter vinelandii DJ]
          Length = 356

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/360 (10%), Positives = 114/360 (31%), Gaps = 7/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E Y+L  +   F  +   ++ +   + ++  ++ +  +   L   L+++   +P  
Sbjct: 1   MRILERYLLGNLLLGFAAAAALLLPLFSTLDLVGELDDIGDAGYRLGQALQVTLMTLPRR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + PF   +     L  ++ + EL ++   G S   +    L    LL+  L   +  
Sbjct: 61  AVELGPFIALLGGIAALGQLSMSQELSVLRTAGVSATRIGLTALLAGTLLAGGLGALDEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +      + K +        +++  +   D   ++I           + I    +
Sbjct: 121 VASPLQQK----AIKLRAYAKPDNDKDDSIWARKDGQVVRIGSLATGRVPNHLEIFRFDE 176

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           +   + Y     +         L+D  + R S   + +  ++   +      +    + L
Sbjct: 177 SNRLQEYILADRAEIQPGGLWQLHDVRLKRWSDEGESVERLERLEWRAILPDSRLDEVTL 236

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L     +      +    +     ++L   +  +   L ++         R
Sbjct: 237 PPASLSARQL-RGYVHFLQNTGQPSIQFEIALWQKLGVPILTLAMILFALPFTFAPV--R 293

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + +   +   V+ G   ++   +       ++ L    +     L + +++ +
Sbjct: 294 STGLGSRLALGAVMGLLVYIGNESLVSLGQLLKLNAMLVGLLPALVLLGMALALVRRFDR 353


>gi|194436708|ref|ZP_03068808.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
 gi|256024435|ref|ZP_05438300.1| hypothetical protein E4_13754 [Escherichia sp. 4_1_40B]
 gi|194424190|gb|EDX40177.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
          Length = 359

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 124/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S +   + +
Sbjct: 181 DLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLMALSLVYWYDR 357


>gi|218131075|ref|ZP_03459879.1| hypothetical protein BACEGG_02679 [Bacteroides eggerthii DSM 20697]
 gi|217986779|gb|EEC53112.1| hypothetical protein BACEGG_02679 [Bacteroides eggerthii DSM 20697]
          Length = 380

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 118/363 (32%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S       I+       IP 
Sbjct: 22  LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWEAIIFDYYMNFIPY 81

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F   +
Sbjct: 82  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVTTFCLGS 141

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + PK   T      K       +             +       + + T     +   +
Sbjct: 142 YVIPKGSVTRLNFEDKYYKPRKSTTARNIQLEVDSGVIAYIERFEDYSKTGYRFSLDKFK 201

Query: 180 DTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           D Q      A+S + D        + D  +     + + I   +     L  E A+   +
Sbjct: 202 DKQLVSHLTARSITYDTATVHKWTVKDYMIREMDGMRESIVKGEKMDTILFMEPADFLIM 261

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        L              ++ +  E+HKR+       I  LI +      + 
Sbjct: 262 KNQQEMLTSPQLSEYINRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSL----SS 317

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKK 357
            + +  +             +  F  I      N    P + +++   + +     + KK
Sbjct: 318 KKTKGGMGLHLGIGLGLSFSYILFQTIASTFAVNGNVPPFIAVWIPNLLYAFIAFYLYKK 377

Query: 358 YTK 360
             K
Sbjct: 378 APK 380


>gi|317153285|ref|YP_004121333.1| permease YjgP/YjgQ family protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943536|gb|ADU62587.1| permease YjgP/YjgQ family protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 388

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 131/360 (36%), Gaps = 10/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK     I + + + F ++   ++ +  + ++LQ  +L  S       +L++  YL P  
Sbjct: 1   MKLLHRQIFKELLKLFGLTVACLLGLILIGRMLQLRSLFLSQNIGFFNILQLFFYLTPFF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++TP    +        M+ + EL  +   G S   ++   +   +L ++F F     
Sbjct: 61  LLLITPIATMLSVFLTFLRMSTDNELTALKANGVSLYRMLPAPIAFCVLCTLFTFFISMW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
                    K    +   + +   L+  +F +    +     + + +   L+ +F+ D  
Sbjct: 121 GLAWGMDMFKTSLYQFARSHSRFALQPGVFNKEFPGITFYAHQVDNDTGELKFVFVRDQS 180

Query: 180 DTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA-- 233
            +    +  A    I          I+ N G ++R+S    +I      S  L       
Sbjct: 181 ISGASVVVVAPEARIVSSPKTAEVHIVFNKGRIYRQSGEDINILRFGSYSVRLDLGKLLG 240

Query: 234 NSSTIVLKANDQN---LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           + S    KA D     L  + N     P    + L    +E++KRLT  L  +I G+ +I
Sbjct: 241 DFSFSEEKAKDMTFAALREIRNDPSIAPQQTAQFLRKVDTEYYKRLTLPLGCLILGMFAI 300

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             A     +RQ+  +        + + +F     +       P Y       L+ + ++F
Sbjct: 301 PIAYVFRGLRQQYGLLLSMGLFLLYYSMFSLSVSLGEAGAIAPVYGLWAPNILYVLVAVF 360


>gi|256845304|ref|ZP_05550762.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
 gi|256718863|gb|EEU32418.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
          Length = 363

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 117/362 (32%), Gaps = 11/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++YI +   + FLM+ +  + +  + Q  + I  ++    +   +      L+P + 
Sbjct: 3   KKMDMYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLAGEEIFDYILNLLPKMF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     ++ M  N E++ +  +G   + +++  L +A ++S+ +F   N I
Sbjct: 63  VETAPLSVLLAGLITVSIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFINNSI 122

Query: 122 EPKCRSTIKQLSA-----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
             K  + I            +L  T               L  KI++         +   
Sbjct: 123 YTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLYLMGKINRETGMAENIEVIKF 182

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           ++  ++  +I  A+S   D+D    I ++  ++                      S    
Sbjct: 183 ETEISKPKEIITAKSAKFDIDENKWIFSNVNIYNVDTKETVTKTEYKSDLYKDDPSNFIR 242

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                     +  L        N   E    Y +E  KR +      I   I + A    
Sbjct: 243 ASAEDPRMLTIKELKKTIKEQKNI-GEDTRIYLAELAKRYSFPFASFIVAFIGLSA--SS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
             VR  +    + I +   +G +   S     +  N    P +  ++       I +  +
Sbjct: 300 KYVRGGRTTMNLVICVVAGYGYYLV-SGAFEAMSLNGIVNPFVASWIPNILYLIIGIYFM 358

Query: 355 KK 356
            +
Sbjct: 359 NR 360


>gi|154707760|ref|YP_001424260.1| hypothetical membrane spanning protein [Coxiella burnetii Dugway
           5J108-111]
 gi|154357046|gb|ABS78508.1| hypothetical membrane spanning protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 355

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 111/358 (31%), Gaps = 4/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI   I  +  +  L ++ I   ++ + +++ +      L          +P+ 
Sbjct: 1   MPLLNRYIRNAIITATALVMLVLLGIEMFMEFIGQLSQIGLVHYGLGQAFLYVLTQLPSD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  +  ++EL+++   G S   +   V+  A+L+ + +     +
Sbjct: 61  LYQLFPMAGFLGCLIGLGRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVAMTFIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+  ++ ++    A           +++           S    N   +      +  
Sbjct: 121 IAPQIEASGEETKLTALSKAVGYKALGDVWLHGAQSFIHIGSVDAKNKISEVSQFFINNK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q     YA  G         IL + +  + +P       +     T+     +      
Sbjct: 181 HQLLSAVYAPKGEYVKG--HWILYNVKQTQFTPNRTTEKKIAKFPLTIVFNPDHLQQGRK 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             + Q++  L +               Y   F +R  Q L  V+   + +          
Sbjct: 239 MVDRQSIVGLYH-TIRYRQQAGLQTSRYVFAFWQRFIQPLTTVVMICLGVPFIFGSLRQA 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSY-IIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    I +  +F +   F        +  P +  ++   LF +  + LL   ++
Sbjct: 298 SMGLRILTGIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVLFAVGCVILLRYSRR 355


>gi|121611823|ref|YP_999630.1| permease [Verminephrobacter eiseniae EF01-2]
 gi|121556463|gb|ABM60612.1| permease YjgP/YjgQ family protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 369

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/370 (14%), Positives = 123/370 (33%), Gaps = 15/370 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWV---IQILQRINLVSSSTESLNILLKISGYLI 57
           MK+    I R    +        + + +    I  L+ + L       L+  L      I
Sbjct: 1   MKTIRRLIHREALSAVCFVTAGFLALFFFFDLIDELRWVGLAGREGYHLSHALLFVALGI 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P+ L  + P    + T  V+  + +++E  I+  +G      ++ +L L     +  F  
Sbjct: 61  PSHLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGMGPWRALRTLLTLGGFFVLLTFAV 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEEN-LFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + + P    T +++ A A   LT           +      + +    PN  ++ + I 
Sbjct: 121 GDYLAPWTDRTAQRIKAHALGGLTSGATGAWLKERQDRHSFAVNVRALTPNGGMRDVRIF 180

Query: 177 DSRDTQTHKIYYAQS-GSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-----SYTLQT 230
           +  D          + G    D    +             +D + ++        +  + 
Sbjct: 181 EFDDQGRLVTQTRATVGRFATDGAWELAQVRRSRFARGDGQDDARVEHLDAPALRWPTRI 240

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            +   +  +LK +      L      + N   +  + Y  EF ++L   L  ++  ++++
Sbjct: 241 SADMVAASLLKPDRMATLDLFQ-FIRHLNANGQSTQRYAIEFWRKLFYPLSCLVMVVLAL 299

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYY---IPILYLFLFCI 346
             A                +   ISF +    F Y  +    +P+     P L   L  +
Sbjct: 300 PFAYLHLRSGGTAGYVFGGVMAGISFFLLNNVFGYAGNLQNWSPWLTAAAPGLIYSLLSL 359

Query: 347 SSIFLLMIKK 356
           ++   L++++
Sbjct: 360 AAFGWLVLRR 369


>gi|171316728|ref|ZP_02905940.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MEX-5]
 gi|171098078|gb|EDT42893.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MEX-5]
          Length = 363

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 123/363 (33%), Gaps = 15/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFIEKMSPDQSKVQNVFVTSTEN 181

Query: 183 THKIY---YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                   +          + ++L DG  +  +P   +  IM+F+ Y ++  S   + + 
Sbjct: 182 GKVNIVVSHTGHTETKDGDRFVVLEDGRRYDGTPGQPNFKIMEFQRYGVKITSTPVTNVP 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRAL 298
              +      L NP  +N            +EF  R    L  +   ++ I  +      
Sbjct: 242 TTNSTPTPDLLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIPLSYQNPRR 290

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R    +  + I L+ S  +    + I          +  L++ +  I ++   +  +  
Sbjct: 291 SRTINLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHVIVAAIVALIFWLRVRNR 350

Query: 359 TKI 361
             +
Sbjct: 351 PLL 353


>gi|16125407|ref|NP_419971.1| hypothetical protein CC_1155 [Caulobacter crescentus CB15]
 gi|221234150|ref|YP_002516586.1| hypothetical protein CCNA_01213 [Caulobacter crescentus NA1000]
 gi|13422473|gb|AAK23139.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220963322|gb|ACL94678.1| hypothetical membrane spanning protein [Caulobacter crescentus
           NA1000]
          Length = 353

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/352 (12%), Positives = 110/352 (31%), Gaps = 10/352 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LY+LR +    L + L ++ +  ++ +L   + +      +  +   +   +P +
Sbjct: 1   MK-LQLYVLRTVATRILGAALILMSVLQILDLLDVTSDILDRGLGMAGVGYYAALRLPRL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P           + + R + ++ +  +G S   ++   +  A+ + +   +   +
Sbjct: 60  FEQVAPIAVLAGGLFAFSQLARESAIVAMRASGISGYRIVGMAVPAAVAVMLLDALCGQV 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+   T+                    F     DL I  +      T+ G+ I     
Sbjct: 120 LAPRADPTLADWWRNTTPVAERKEPVPRTFR-AGADLVIGANASADGRTITGVTIFRRDS 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       +   D +A  L   +  R +      S     S+       +   +  
Sbjct: 179 KGILVEKVEAPAA-RYDGKAWTLEQPKTTRFAGDLSQASTAAATSWPTALRPQDVQGLFG 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRS-EFHKRLTQWLFPVIFGLISIVAADKRALV 299
              D ++    +      N   +  E++ +             ++  L+S   A      
Sbjct: 238 ---DDSMPTAASARRALENGGSDRPESFYATHLQAAFASPFVSLVMLLLSAPVALANFRS 294

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            Q   +    ++  + F V    + ++  + ++    P L ++        L
Sbjct: 295 GQGAVLLTGGLAAGLMFLV---ANGMLTALGESGALTPFLAVWAAPAIFGAL 343


>gi|167763060|ref|ZP_02435187.1| hypothetical protein BACSTE_01426 [Bacteroides stercoris ATCC
           43183]
 gi|167699400|gb|EDS15979.1| hypothetical protein BACSTE_01426 [Bacteroides stercoris ATCC
           43183]
          Length = 380

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 119/363 (32%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S       I+       IP 
Sbjct: 22  LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWQAIIFDYYMNFIPY 81

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A +++I  F   +
Sbjct: 82  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAITTFCLGS 141

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + PK   T      K       +             +       + + T     +   +
Sbjct: 142 YVIPKGSVTRLNFEDKYYKPRKSTTARNIQLEVDSGVIAYIERFEDYSKTGYRFSLDKFK 201

Query: 180 DTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           D Q      A+S + D        + D  +     + + I   +     L  E A+   +
Sbjct: 202 DKQLVSHLTARSITYDTAAVHKWKVKDYMIREMDGMRESIVKGERLDTILFMEPADFLIM 261

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        L              ++ +  E+HKR+       I  LI +      + 
Sbjct: 262 KNQQEMLTSPQLSEYIDRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSL----SS 317

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKK 357
            + +  +             +  F  I      N    P++ +++   + +     + KK
Sbjct: 318 KKTKGGMGLHLGIGLGLSFSYILFQTIASTFAVNGNVPPVIAVWIPNLLYAFIAFYLYKK 377

Query: 358 YTK 360
             K
Sbjct: 378 APK 380


>gi|88810917|ref|ZP_01126173.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
 gi|88791456|gb|EAR22567.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
          Length = 367

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/344 (13%), Positives = 100/344 (29%), Gaps = 4/344 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ E Y++R +   F+++   ++ +   I ++++++                G ++P  
Sbjct: 8   MKTAERYLMRAVAGGFVVAAAVLLPLFSFIDLIEQLDDTGQGNYHSAQAFAYVGLILPRR 67

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN- 119
           L  + PF   + TT  L  +  + EL  + + G S   +    L   +LL + L   +  
Sbjct: 68  LIELGPFIALLGTTVALGGLASHRELTALRSVGVSPGGIALAALKAGVLLILLLAAIDQL 127

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           +  P  +      +                 +    D  +++           I I    
Sbjct: 128 VASPLQQHAFGMRATALSGDSNAESGSGAALWARRGDRLLRVGALRLGRIPADIEIFHFN 187

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                  Y     +    R    LN   V      +   +      +      A    + 
Sbjct: 188 AEGHLVRYIHADYAEIHHRAPWRLNTVLVKAFMAGTPVTTRHASMVWQTFLTPAQIGLLE 247

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             A   +   L            +    Y     ++L   L      L+++  +      
Sbjct: 248 KPAESLSPVQLY-GYVQYLRSTGQSSAVYAVMLWQKLGLPLTAAAMILLAVPFSIGAP-- 304

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           R       I +      GV+     I++         P++ L  
Sbjct: 305 RGASIGSRIALGAIAGLGVYLADQIIVNMGLLLDLSPPLIALGP 348


>gi|323144744|ref|ZP_08079321.1| lipopolysaccharide export system permease protein LptG
           [Succinatimonas hippei YIT 12066]
 gi|322415495|gb|EFY06252.1| lipopolysaccharide export system permease protein LptG
           [Succinatimonas hippei YIT 12066]
          Length = 355

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 117/359 (32%), Gaps = 7/359 (1%)

Query: 1   MK--SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIP 58
           MK    + YI + +  + L+    +  +  +I  + ++  +   +     L+      +P
Sbjct: 1   MKFGILDRYIGKNVFFTILLVTFCLTLLTTLITFVDQMRYIGRGSVDFLFLVSHVALEVP 60

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
            ++ +  P    +     L ++ R +EL+++ + G SR  ++   L   I L + +    
Sbjct: 61  GIVVLFFPVAVLLGGVIALGNLARTSELIVMQSIGISRTGIVLSALKTVIPLILVIVCLG 120

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
             + P+     +     A      S   + L+ R        I      +    + IV  
Sbjct: 121 EFVVPRVEQYAENRLNFASSNGNLSVTNDGLWLREGHSF---IGIRYTMSDGSLLDIVRY 177

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                +   ++++ S        ++ D      +      + +  + ++L         +
Sbjct: 178 EVEGKNLKAFSRAKSGVYSDGKWVMRDVRKTVFAENKVIRTSLAEEKWSLNLTPERVEVV 237

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            +K  +     L++   N      +   +YR E + +    L  ++  L++         
Sbjct: 238 GVKGYNLTARGLID-YINYLEENNQDASSYRLELYNKFMSPLTMIVMLLLAASTVFGPLR 296

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                      I+L   F +          +   P  +    L       + + ++++K
Sbjct: 297 SMTMGARVLAGIALGFGFYLANQIGAPFALVYGIPPILGA-SLPTLVFMLLAIALLRRK 354


>gi|190150428|ref|YP_001968953.1| hypothetical protein APP7_1159 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303250152|ref|ZP_07336354.1| permease [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|303253325|ref|ZP_07339474.1| permease [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|189915559|gb|ACE61811.1| hypothetical protein APP7_1159 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302648007|gb|EFL78214.1| permease [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|302651215|gb|EFL81369.1| permease [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 367

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 121/361 (33%), Gaps = 15/361 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I +S L     ++ + +  Q++  +N   S     +++L + G  +P +  
Sbjct: 2   ILSRYLTKEIFKSQLAILFILLLMFFSQQLITVLNSAVSGKVPTDLVLSLLGLGMPALAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +     L      +E+ ++   G  +  L K   FL+I  +     +   + 
Sbjct: 62  FMLPLSLFVALLLTLGRFYAESEITVMRACGIGKSLLTKVAFFLSIFTTALAVYNVFWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD--SRD 180
           P   +   ++ A+A+    FS L    F      +    +  N  N L  I++     + 
Sbjct: 122 PWAINKQSEMLAEAKSNPRFSALSAGQFMTAGGYVLFIENINNEQNKLNDIYVFQPDQQK 181

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+SG +       Q + L +   +  +    D  I  F SY       +  +
Sbjct: 182 KNRPSVVVAESGQLQGLPNGDQILTLENSTRYEGTANVADFRISHFDSYQAYLGYQDVDS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   + + L+           +     ++E   R    L   +  L+++  +    
Sbjct: 242 NEKLVQRADFNKLM----------ADQSNEAKAELQWRFALILAVPLMALLAVPMSSVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              +  K+ P  +   I F +           + +   +  L    F I ++ +     K
Sbjct: 292 RQGRFAKVIPAVLLYLIYFLLQSSLKSSGASGKLDATLLMPLVSIAFFILAMVMNFWDTK 351

Query: 358 Y 358
           +
Sbjct: 352 W 352


>gi|170697653|ref|ZP_02888741.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria IOP40-10]
 gi|170137401|gb|EDT05641.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria IOP40-10]
          Length = 363

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 123/363 (33%), Gaps = 15/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFIEKMAPDQSKVQNVFVTSTEN 181

Query: 183 THKIY---YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                   +          + ++L DG  +  +P   +  IM+F+ Y ++  S   + + 
Sbjct: 182 GKVNIVVSHTGHTETKDGDRFVVLEDGRRYDGTPGQPNFKIMEFQRYGVKITSTPVTNVP 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRAL 298
              +      L NP  +N            +EF  R    L  +   ++ I  +      
Sbjct: 242 TTNSTPTPDLLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIPLSYQNPRR 290

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R    +  + I L+ S  +    + I          +  L++ +  I ++   +  +  
Sbjct: 291 SRTINLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHVIVAAIVALIFWLRVRNR 350

Query: 359 TKI 361
             +
Sbjct: 351 PLL 353


>gi|330752461|emb|CBL87411.1| predicted permease YjgP/YjgQ [uncultured Flavobacteria bacterium]
          Length = 357

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/360 (12%), Positives = 115/360 (31%), Gaps = 6/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F+ YIL+    +F +  L  + I   + + ++I+ +  +    + +           
Sbjct: 1   MKIFDWYILKRYLLTFFLMLLLFIPIGITVNLAEKIDRILENKVPFDEVAAYYFDFTIYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++   ++G S    ++P      +++I        
Sbjct: 61  ANLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGISFFRFLRPYFIGGTVIAIVALFLGMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             PK      + + K          +       DD+     +  + +       +     
Sbjct: 121 WAPKASKGYNEFTYKYLSNKKAVQSQYIYQQINDDEYIYVSNFDSNSMRGNNFTLEHFDG 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +     +A +           L++  +         I   +     L  +  + +    
Sbjct: 181 NKLEYKIHASAIRFIEKDSNYRLSNYYLRYIGKDHDSIIFKRRIDTLLGFDLLDLTPPKY 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            A    +  L +            +  Y+   +K+ +  +   I  +I++      ++ R
Sbjct: 241 VAETLTVHELSDFIKREEARGSSNINRYKVVQYKKWSLPVSVYILTIIAVAV---SSIKR 297

Query: 301 QRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +      +   + I+    +    F  +  + +  P        F+F I +I+LL   K+
Sbjct: 298 RGGMGVNLAFGIVIAMVYVFFDKVFGVMAEQSDFPPVVAVWFPNFIFGILAIYLLFNAKR 357


>gi|126725341|ref|ZP_01741183.1| putative permease [Rhodobacterales bacterium HTCC2150]
 gi|126704545|gb|EBA03636.1| putative permease [Rhodobacterales bacterium HTCC2150]
          Length = 365

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 118/359 (32%), Gaps = 12/359 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              LY  R    +FLM       I ++I +++++   SS++  +    +++    P  L 
Sbjct: 2   ILHLYFARKFITNFLMILFVFFGIIFLIDMVEQLRRFSSNSVGMKEAAQLALLNAPGNLY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +  ++ R +EL+I   +G S +  +   L +   L +F     N I 
Sbjct: 62  RILPLLVILSTLALFLNLTRTSELVIARASGRSALGALLAPLLVTFTLGVFGVSVWNPIG 121

Query: 123 PKCRSTI-----KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
               +       + L   +      +         ++    I  ++ N N T+ G     
Sbjct: 122 AATANLYETISDRHLGRASNALSIGAEGLWLRQGNVEGQTVIHANETNQNGTILGNVTFL 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI---SKDISIMKFKSYTLQTESAN 234
           + D  +  IY  ++ +  L+    +LND +              S               
Sbjct: 182 AFDINSQVIYRIEAKTAKLETGGWVLNDTKRWDFKDTLNPELSASTTDTIRLQSNLTQKE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                   +D     L      +          +R  +   L    F +   LI   A  
Sbjct: 242 IQESFGAPSDIPFWEL-PAFIASLENAGFSSTQHRVWYATELALPAFLMAMVLIG--AMF 298

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                R  K    +  ++ + FG+F+  ++    +  +     +L  +   ++ I L +
Sbjct: 299 TMRHSRFGKTGIMLLGAIVMGFGLFFLKNFAQ-VLGNSGQIPVLLAAWTPPLAGILLAL 356


>gi|325919211|ref|ZP_08181260.1| putative permease [Xanthomonas gardneri ATCC 19865]
 gi|325550311|gb|EGD21116.1| putative permease [Xanthomonas gardneri ATCC 19865]
          Length = 368

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/363 (11%), Positives = 100/363 (27%), Gaps = 11/363 (3%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V         +   + +         Y +P     +
Sbjct: 9   DWYVGRAVLFTVLLTWAVLLGLDLVNAFASEAKNIGQGSYTFGHAFAYVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   + P 
Sbjct: 69  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTAGMVISGETVGPW 128

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI--------SKYNPNNTLQGIFIV 176
            ++    L   A+     +    +  +  + D ++                  L  + + 
Sbjct: 129 AQNQADTLKTSARYNSDMAMARYSGLWAREGDTFLNALSGEEKLLDGGGTALDLHDVRLY 188

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
               +   +         +    A  L           S          +  Q   A  +
Sbjct: 189 HLDASGRLQQLTYA-ALAENRNGAWTLRQVRRDTFQERSVQRETFPELPWQSQLSPAALA 247

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + K  + +   L   +             Y  ++  R    L  +   L +I  +   
Sbjct: 248 AGLAKPRNLSARDL-EQSIEYRRRNGLDARDYEDQYWSRWFYPLNVLALCLAAIPFSFGS 306

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  K   + I  ++ F +   F            Y     L    +  +   + ++
Sbjct: 307 LRSGGLGKRLFLGILFALGFWLLQLFFG-RMAGALKLDYRIAYALPPMVMLGVSAWLFRR 365

Query: 357 KYT 359
           + +
Sbjct: 366 RSS 368


>gi|307294586|ref|ZP_07574428.1| permease YjgP/YjgQ family protein [Sphingobium chlorophenolicum
           L-1]
 gi|306879060|gb|EFN10278.1| permease YjgP/YjgQ family protein [Sphingobium chlorophenolicum
           L-1]
          Length = 367

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 114/358 (31%), Gaps = 7/358 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
           +    Y+ R            +V +   + +L     + +        L        P +
Sbjct: 10  RQISWYMARLFLTRTFAVLAMLVAVLQTLDLLGESGDILAYAGNGDAQLWHYVALRAPQI 69

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   + T  +L S+N+N+E++ +   G S   ++ P+L  A+ +++  +     
Sbjct: 70  VARFLPFSVLLGTLIMLASLNQNSEIISMKAAGLSAHQILAPLLAAALGVALISYAFNER 129

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVD 177
           I  +  + +    A     L      +   +  D +       ++       L+ + I +
Sbjct: 130 IVARSTARLSAWQAVDYGPLPPETGVKASPWVRDGNNLVTAAIVAGRGTAVQLRKVEIFN 189

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +     I  A  G  D   ++ +L   E  +          +    +         + 
Sbjct: 190 RVNNMLTTIVQAPKGHYDPVAKSWVLE--EARQFDVARGTERQVGTVRFGRDIRPDQFTL 247

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +  +    S L      +                 +L+  L  ++  ++  VAA   A
Sbjct: 248 AKVDPDALTFSQL-QAAIGDLRDAGRPTSELEGSLWHKLSGPLSALLMPILGSVAAFGLA 306

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              Q      + ++L  ++ V   FS  +  +   P ++     FL  +     ++ +
Sbjct: 307 RSGQLFVRAVMGMALGFAYFVADNFSLAMGNLGAYPPFLAAWAPFLLFLLVGETVLFR 364


>gi|19704366|ref|NP_603928.1| hypothetical protein FN1031 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296327426|ref|ZP_06869973.1| YjgP/YjgQ family permease [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|19714618|gb|AAL95227.1| Hypothetical membrane-spanning protein [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296155439|gb|EFG96209.1| YjgP/YjgQ family permease [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 359

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 117/338 (34%), Gaps = 1/338 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  SIF+   +  
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIVFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    +K +  K         L+E  F    D+  I + + + +   + I   +  +
Sbjct: 121 IIPRSFIKLKYVGTKIAYENPVFQLKEKTFIDNLDEYSIYVDEVSSDGKAKNIIAFEKPE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +                 AII+ + +        K   +  F    +   +     + +
Sbjct: 181 DKNKFPMVLTGEEAFWKDSAIIIKESQFVSFDEKGKKNLVGTFDEKRVVLTAY-FQDLNI 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K  D     +++            +  Y+ E  ++L      V   +I    +     + 
Sbjct: 240 KIKDVEALSIIDLIKGLKKVEATEVIKYKIEIFRKLALVFSTVPLAVIGFCLSLGHHRIS 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
           ++       I +            +    + NP+    
Sbjct: 300 KKYSFVLAMIIVFAYIIFLNIGIVMATAGKLNPFIATW 337


>gi|114776266|ref|ZP_01451311.1| hypothetical protein SPV1_01062 [Mariprofundus ferrooxydans PV-1]
 gi|114553096|gb|EAU55494.1| hypothetical protein SPV1_01062 [Mariprofundus ferrooxydans PV-1]
          Length = 386

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 140/363 (38%), Gaps = 10/363 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y+LR     F    +F++ +  + + L+ +  VS + E+ ++++ +    +P  L 
Sbjct: 2   TLDRYMLRLWLGPFFGGLVFVLAVMLLARALKLLGTVSDTAEAWSLIVDLLALTMPFFLL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P  F +   N +T + +++E+ ++  +G S   + +    +  LL + L     +  
Sbjct: 62  QIVPMAFFLSLQNTITGLQQSSEMDVLRGSGLSYGRMFRVFFIVVPLLWLGLTYIAMVQL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+ +     + AK              F R  D + + +   +   T     I++     
Sbjct: 122 PQGQLGFNNILAKIYAMKGAISFAPQRFTRGLDGITVYVDGEDSEGTY-HGLILEDHRGG 180

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
              IY A+S   D+  + ++L   +  R      D  ++ F  Y +       +  +L +
Sbjct: 181 VSVIYTAKSARFDMGGEYLLLKLKDGVRLEGEGADQRMLAFDRYQVSIALPAGNRKILHS 240

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           ND     +  P   +  +  +      +E+++RL      ++    ++  +      ++ 
Sbjct: 241 NDHVTM-MTVPELWHAMHNSQS-GAAVAEWNRRLLMPTTTLVLLFFALPLSL---TQKRS 295

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK----KY 358
            K   +   +++   V+     +  ++ Q  +    +++    +    + + K+    + 
Sbjct: 296 GKAGSMIGGIALLVMVYNLQLLLYQQVNQGGFPGWSMWMGQALLLFTGMFLSKRAEADRL 355

Query: 359 TKI 361
            K+
Sbjct: 356 PKL 358


>gi|300114327|ref|YP_003760902.1| permease YjgP/YjgQ family protein [Nitrosococcus watsonii C-113]
 gi|299540264|gb|ADJ28581.1| permease YjgP/YjgQ family protein [Nitrosococcus watsonii C-113]
          Length = 383

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 124/361 (34%), Gaps = 20/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YIL+ +  +     L ++ I   I+ ++ ++  +        +L +SGY     L 
Sbjct: 6   IVDRYILKELSLNATAITLVLLLIFGGIRFIRFLSQATKGKVPGEAILALSGYEAIGALV 65

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  M  + E++ +   G SR  L++ VL   ++L+I +      + 
Sbjct: 66  LLLPLASFLAVLLALGRMGADNEVIALFACGVSRRHLLRVVLTFGLVLAIGVGSISLYLG 125

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDT 181
           P   +   +L  +A LA   S L    F                 +        +   + 
Sbjct: 126 PAASAEGYRLKQQALLAAETSGLVAGNFKESQHGQRVFYAESLTEDGLGMKNVFIQVWEP 185

Query: 182 QTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               ++ A +G +  D     + +IL DG  +        I I +F+ + +  +      
Sbjct: 186 TQKTLFRAATGHLQTDEGTGDKHLILEDGYRYDLMGEEVGIRIFRFERHGILVKKGGMQE 245

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             ++        L                   +E   R++  +  ++  ++++  A    
Sbjct: 246 FRIRHQTLPTLTLWEM----------GAPKDIAEIQWRISMPITTLLLVMLAVPLA---R 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIK 355
              ++ +   +  ++ +            + +  E  P ++ + ++    +  + + +  
Sbjct: 293 SGPRQGRYAGLLPAVLVYVIYSNMLGIARNWVEHEVIPAFLGLWWIHALMLLVVLISLWP 352

Query: 356 K 356
           +
Sbjct: 353 R 353


>gi|332969353|gb|EGK08378.1| YjgP/YjgQ family permease [Kingella kingae ATCC 23330]
          Length = 354

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 113/360 (31%), Gaps = 6/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI+  +      +   I+ +   I +L  I  +     ++ + L+     +P  
Sbjct: 1   MKLLSRYIITRLSLMSAYALFAILSLYSFIDLLSEIG-IVGQNYTMAVALQYIALQMPAR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L  +  ++E  +I  +G S   LI  +L    + ++F  +    
Sbjct: 60  AYQLMPLATLIGGLIALNQLVSSSEWAVIKTSGWSSKRLIGTILQFGAIFAVFTILLGEW 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+       +   A+   T       ++ +  + +    +       L       +  
Sbjct: 120 IAPELSRRGDAIKTLARSQQTTLVHN-GVWIKQPNSMINIGAMLPDKTLLDVKIWQFNDQ 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q  +  YA+       +    LN  +    +      S    +++    +S     +++
Sbjct: 179 YQLTESVYAKQARFANGQWQ--LNQVQSSELADKQIRTSQQGQRTWQFNIQSNMLDVLMV 236

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    +   L            +  E Y   +  +L   +  ++  L+++          
Sbjct: 237 KPEQMSFINLTQ-YIGYLKDNKQQTEAYDVAWWNKLVYPIATMVMALVALAFTSNSGRHG 295

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F           ++ + P ++  + L     +   + +I K+  +
Sbjct: 296 NLGLKLFGGICLGLLFFFTGRLFGFTTQLYRVPAFVSAV-LPTLGFALWAMWLIVKQERR 354


>gi|239809484|gb|ACS26210.1| unknown [uncultured bacterium]
          Length = 359

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 121/356 (33%), Gaps = 25/356 (7%)

Query: 18  MSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVL 77
                ++ I    + ++ +   +       +LL I G+ +P  L ++ P    +      
Sbjct: 3   AVSAVLLVIIMSGRFIKYLAQAAQGLLDPGVLLLIMGFRLPGFLQLILPLGLFLGILLAY 62

Query: 78  TSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQ 137
             +   +E+ ++  TG S+  L+   L  A L+++ +      + P+  + + ++  +  
Sbjct: 63  GRLYLESEMTVLSATGMSQRRLLVYSLAPAALVAVVVGWLSLGLAPQGIAEVDRILNQQD 122

Query: 138 LALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTH---------KI 186
               F  L    F   R    +          + L G+FI ++  ++             
Sbjct: 123 SLTEFDTLVPGRFQTLRGGSRVTYTRELSADRSELGGVFISETNVSRQTGKESGLSVLVA 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
              +        + +IL +G  +  +P   D   +++ +Y +       S  + +     
Sbjct: 183 ESGRQEVQPDGSRYLILENGYRYDGNPGQADYRAIQYDTYGVLLPKPEVSMELSEREALP 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
              LL                +R+E   R +  L   +  ++++  A    +  ++ +  
Sbjct: 243 TRELL----------GSDNIRHRTELQWRFSLPLLVFVVTVLAVPLA---KVNPRQGRFL 289

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLMIKKKYTKI 361
            +  ++ +          +   +++        L+       +I LLM+  +  ++
Sbjct: 290 KLLPAILLYMTYLALLIAVRGALDKGRIPMALGLWWVHGLFLAIGLLMLYWEPIRL 345


>gi|121594279|ref|YP_986175.1| permease [Acidovorax sp. JS42]
 gi|120606359|gb|ABM42099.1| permease YjgP/YjgQ family protein [Acidovorax sp. JS42]
          Length = 369

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/370 (12%), Positives = 123/370 (33%), Gaps = 15/370 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRIN---LVSSSTESLNILLKISGYLI 57
           MK+   +I R +        L  + + +   ++  +       ++   L+  L      +
Sbjct: 1   MKTIRRFIYREVVVGVAFVTLAFLALFFFFDMVDELRWVGRAGANGYQLSHALLFVALSL 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P +L  + P    + T  V+  + +++E  I+  +G      +  +L L     +   I 
Sbjct: 61  PQLLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALSTLLMLGCAFVMVTVIV 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEEN-LFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + I P        + A+    ++           + D  + + +   +PN  ++G+ + 
Sbjct: 121 GDYIAPASEKAASLVKARRLGQISTGATGAWLKERQGDHSIAVNVRAVDPNGAMRGVRVF 180

Query: 177 DSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK-----FKSYTLQT 230
           +            A+  + D  R A  L   +       +     +         +  + 
Sbjct: 181 EFDARGRVAATIQAEQATFDDARDAWNLQQVQRTLFEAEADGGMRVSRLQEPTLRWPTRI 240

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                +  +LK +      L      +     +  + Y  EF +++   L  ++  ++S+
Sbjct: 241 SPDMVAASLLKPDKMATIELFR-FVRHLEANGQSAQRYEIEFWRKVFYPLSCLVMVVLSL 299

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYY---IPILYLFLFCI 346
             A                +   ISF +    F +  +    +P+     P L   +  +
Sbjct: 300 PFAYLHFRSGGIAGYVFGGVMAGISFFLLNNVFGFAGNLQNWSPWLTAAAPGLIYSVLSL 359

Query: 347 SSIFLLMIKK 356
           ++   L++++
Sbjct: 360 AAFGWLVLRR 369


>gi|212710412|ref|ZP_03318540.1| hypothetical protein PROVALCAL_01473 [Providencia alcalifaciens DSM
           30120]
 gi|212686832|gb|EEB46360.1| hypothetical protein PROVALCAL_01473 [Providencia alcalifaciens DSM
           30120]
          Length = 358

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 116/355 (32%), Gaps = 2/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I  S LM+   +V ++ +I+ ++++  V     +       +   +P  + +
Sbjct: 5   LDRYIGRTILNSILMTLFLLVSLSGIIKFVEQLRKVGDGDYTAMSAGVFTLLTVPKDIDI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++   +EL+++  +G +R+ +   V+  AI L I   I    I P
Sbjct: 65  FFPMAALLGALLGLGALASRSELVVMQASGFTRLQIAMSVMKTAIPLVIVTMIMGEWIAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                 +   A+  +  +    +  ++ +   D        + +              + 
Sbjct: 125 AGEQWARNYRAEKIVGSSLVVTDSGMWAKDAHDFIYIQRIKDASTIQDVSIYRFDDHRKL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTIVLKA 242
             + +A  G+ D D++  +L+  +        K     +    +           + L A
Sbjct: 185 ESVMFAARGTYDADKKLWVLSQVQESILGSQQKITGSQRLTYDWKTNLTPEKLGIVSLNA 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++  L            ++   Y+    +++   L   +  L+++            
Sbjct: 245 DSLSIRGLYQ-YITYLKESGQVASVYQLSMWQKILAPLSAAVMMLMAVSFIFGPLRTVPM 303

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I     F +          +   P  +      +  +     L++K+K
Sbjct: 304 GVRVVSGIVGGFLFYILNQGFGNWSLVYSIPPVVAAALPSVLFLGVSIFLLVKRK 358


>gi|189219653|ref|YP_001940294.1| permease [Methylacidiphilum infernorum V4]
 gi|189186511|gb|ACD83696.1| Predicted permease [Methylacidiphilum infernorum V4]
          Length = 395

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/353 (12%), Positives = 109/353 (30%), Gaps = 4/353 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    Y+ +      L + +    +  +  +   +     +  +   +       +P V+
Sbjct: 28  KILFRYLFKGFLFPLLFTIVAFCSLVIIADLFGSLEDFIQNKATPGQIFHYYLAYLPAVI 87

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M+ P      +   L  ++R+ EL+ +   G     +  P L + +L+++FL   +   
Sbjct: 88  IMIVPPASLFSSLYFLMQLHRHGELIAMQACGVPLQKIFTPFLIIGVLVTLFLAALQLGP 147

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEE-NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
               ++   Q+    +   T  +     ++    +       + +          V  ++
Sbjct: 148 GGNSQAKRDQILEDIKGNKTAVHALRGIIYKEEAEKRIWYFRQLDFIKNQGEDVEVVVQE 207

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS---YTLQTESANSST 237
                +    +          I  +         +  +    F++    +  T       
Sbjct: 208 NSGKDLKKYFARKAAWKDNHWIFYEVNRIDYDSANNFLQSTYFETLPLVSWNTPPRQMVA 267

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +  K  D N S L        + +  LL  Y+ +F+  + + L  ++  LI +    + +
Sbjct: 268 LEKKPRDLNASELWKLINKPRSIQKTLLAPYQVQFYTLVAEPLTILVLLLIGLAEGGRLS 327

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                  +      L   + +F  F  +       P       L  F + S+F
Sbjct: 328 SRHPTAGVFNALFILIAFYLIFHFFQILGQGSRIPPAVAIFSPLVAFTLFSLF 380


>gi|172061426|ref|YP_001809078.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MC40-6]
 gi|171993943|gb|ACB64862.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MC40-6]
          Length = 363

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/363 (14%), Positives = 123/363 (33%), Gaps = 15/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  L + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPLILLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFIEKMSPDQSKVQNVFVTSTEN 181

Query: 183 THKIY---YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                   +          + ++L DG  +  +P   +  IM+F+ Y ++  S   + + 
Sbjct: 182 GKVNIVVSHTGHTETKDGDRFVVLEDGRRYDGTPGQPNFKIMEFQRYGVKITSTPVTNVP 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRAL 298
              +      L NP  +N            +EF  R    L  +   ++ I  +      
Sbjct: 242 TTNSTPTPDLLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIPLSYQNPRR 290

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R    +  + I L+ S  +    + I          +  L++ +  I ++   +  +  
Sbjct: 291 SRTINLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHVIVAAIVALIFWLRVRNR 350

Query: 359 TKI 361
             +
Sbjct: 351 PLL 353


>gi|301168145|emb|CBW27733.1| putative permease [Bacteriovorax marinus SJ]
          Length = 382

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/381 (14%), Positives = 119/381 (31%), Gaps = 23/381 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + Y+       F MS  F V      Q+ + I +V S     +++ ++ G++  + 
Sbjct: 2   LKLTQRYLAVNFIAPFTMSLFFFVAFLLTFQLFRIIKIVISKGVEWSLVFELMGHIAISF 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P      T   L  ++ ++E++ + + G ++  L  P L  A+ +   ++   N 
Sbjct: 62  IPMAVPLSCLFATIYTLNKLSDDSEIVAMRSFGMTKSKLFLPFLISALFIGACIYSLNNK 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  ++  K    +       + ++E  FF     + +                +    
Sbjct: 122 VIPASKTQFKNTIIRLTSRGVLTDIKEGQFFTEVAGVTLFADTVIDKGRKMYNVFIQQEG 181

Query: 181 TQTHKI----------YYAQSGSIDLDRQAIILNDGEVH-RKSPISKDISIMKFKSYTLQ 229
                              ++    +    + L DG +  R    +KD+  + FK Y   
Sbjct: 182 KGNLLEQVVTAKEGALIKIKNEEWSIPSVRLHLTDGTIVKRFKDTNKDLEKILFKEYDFP 241

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNP-----------NYRPELLETYRSEFHKRLTQ 278
             S  +    +  +    +  L                    R   +   + E   R+  
Sbjct: 242 LASGGAVNNFVTKDGMRTNAELRSEIKKATALAVKKKLSRKDRERSMAKTKLELWSRINT 301

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
            L   +F LI      K    + +         L   + +F+       K    P Y+ +
Sbjct: 302 PLLCFVFILIGFSLGIKHGRGKSKNSSGRALFVLLGYYSLFFLGVSFARK-GIVPAYVVV 360

Query: 339 LYLFLFCISSIFLLMIKKKYT 359
               +   S       K  + 
Sbjct: 361 FAPTIILASIGAYFYKKLDWA 381


>gi|326423843|ref|NP_760389.2| hypothetical protein VV1_1477 [Vibrio vulnificus CMCP6]
 gi|319999213|gb|AAO09916.2| Putative membrane protein [Vibrio vulnificus CMCP6]
          Length = 366

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 119/360 (33%), Gaps = 23/360 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    Q +  +   S      ++++ I    +P++  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFLSQQFISVLADASDGDIPASLIMSIVALNMPSMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     LI+  L+LA++ S     +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLIQAALYLAVITSGVAAFNSLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     ++QL+ +     +   L++  F    D   +       +  L  +F+       
Sbjct: 122 PWSMDRVEQLTEQVAAENSVDLLKKGQFQFTPDRSSVVFIDDIKDKQLSNVFVAQLMPRD 181

Query: 183 THKIYYA-----QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +           +   +   RQ I +  G  +   P   +  I +F+ Y       +   
Sbjct: 182 SILPSVMFANGGEVKELSDGRQIISMKQGTRYEGVPTRVEYMITEFEQYDGLIGQRSVKQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +      L+                 ++E   R++ +   V   L++++     A
Sbjct: 242 RGRDWDAIPTLELI----------GNPDPEAQAELQWRVSLF---VCIPLLTMLVIPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-----NPYYIPILYLFLFCISSIFLL 352
           +  ++ +   +  ++ I    F   S     +E+     +    PI  L L        +
Sbjct: 289 VSPRQGRFAKMGPAILIYLAYFLSISATKSALEEGDISASIGMWPINGLLLLVAIMANFM 348


>gi|169634641|ref|YP_001708377.1| hypothetical protein ABSDF3306 [Acinetobacter baumannii SDF]
 gi|169153433|emb|CAP02575.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii]
          Length = 356

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/356 (11%), Positives = 112/356 (31%), Gaps = 4/356 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ +    +   + + +  +  +   L  +  +     +         +  P  L
Sbjct: 5   RIVAKYVTKTTALAMFGTTIVLSVLQILFTYLGELGEL-KPDYNAWQAFIYVLWGAPRYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L ++  N+EL+++ + G S   ++  V+  A+LL +  F     +
Sbjct: 64  YEILPISALIGAVIGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      + + +   +A                      +       +Q   +  ++D 
Sbjct: 124 VPYTNEKAQSVKSHRSVAALGEVKGYWSREGQRFIYIDYANSQGNLRDIQ--VVDFNKDY 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
               +  A+ G    D Q  +    ++   +  +  ++    +S  L  +      + L 
Sbjct: 182 HLQSLINAEQGKFIQDGQWTLQKASQMDILTDGNSILNNHDQQSLGLALQPKYVHMVTLD 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             D + S L++       Y  ++ +TY+  F +++      +   L++            
Sbjct: 242 PEDLSPSQLISFMRYMDEY-SQVPKTYQLAFWQKVASPFSLITLVLVACSFIFGPLRQHS 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I + + + F     F      +        +L   +    +   L+ + +
Sbjct: 301 MGFRLVIALFIGLGFYYLQDFLGYASLVYAPSPAWFVLMPIILMFGAGSYLLYRAR 356


>gi|320155252|ref|YP_004187631.1| putative permease [Vibrio vulnificus MO6-24/O]
 gi|319930564|gb|ADV85428.1| predicted permease [Vibrio vulnificus MO6-24/O]
          Length = 366

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 119/360 (33%), Gaps = 23/360 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    Q +  +   S      ++++ I    +P++  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFLSQQFISVLADASDGDIPASLIMSIVALNMPSMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     LI+  L+LA++ S     +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLIQAALYLAVITSGVAAFNSLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     ++QL+ +     +   L++  F    D   +       +  L  +F+       
Sbjct: 122 PWSMDRVEQLTEQVAAENSVDLLKKGQFQFTPDRSSVVFIDDIKDKQLSNVFVAQLMPRD 181

Query: 183 THKIYYA-----QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +           +   +   RQ I +  G  +   P   +  I +F+ Y       +   
Sbjct: 182 SILPSVMFANGGEVKELSDGRQIISMKQGTRYEGVPTRVEYMITEFEQYDGLIGQRSVKQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +      L+                 ++E   R++ +   V   L++++     A
Sbjct: 242 RGRDWDAIPTLELI----------GNPDPEAQAELQWRVSLF---VCIPLLTMLVIPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-----NPYYIPILYLFLFCISSIFLL 352
           +  ++ +   +  ++ I    F   S     +E+     +    PI  L L        +
Sbjct: 289 VNPRQGRFAKMGPAILIYLAYFLSISATKSALEEGDISASIGMWPINGLLLLVAIMANFM 348


>gi|166713423|ref|ZP_02244630.1| hypothetical protein Xoryp_18790 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 368

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/363 (11%), Positives = 102/363 (28%), Gaps = 11/363 (3%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V         +   + S    +    Y +P     +
Sbjct: 9   DWYVGRVVLSTVLLTWAVLLGLDLVNAFASEAKNIGQGSYSFGHAVAYVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   I P 
Sbjct: 69  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAALALLTAIMVISGETIGPW 128

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI--------SKYNPNNTLQGIFIV 176
            ++    L   A+     +       +  + D ++                  L  + + 
Sbjct: 129 AQNQADTLKTSARYNSDMAASLYAGLWAREGDTFLNALSGEEKLLDGGGTALDLHDVRLY 188

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
               +   +     S +   D     L           S          +      A  +
Sbjct: 189 HLDSSGRMQQLTYASVAEHRDGH-WTLRQVRRDTFQERSVQRETFPELPWQSLLNPAALA 247

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + K  + +   L   +    +        Y  ++  R    L  +   + +I  +   
Sbjct: 248 AGLAKPRNLSAHDL-EQSIEYRSRNGLDARDYEEQYWSRWFYPLNVLALCMAAIPFSFGS 306

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  K   + I  ++ F +   F            Y     L    +  + + + ++
Sbjct: 307 LRSGGLGKRLFLGILFALGFWLLQLFFG-RMAGALKLDYRIAYALPPMVMLGVSVWLFRR 365

Query: 357 KYT 359
           + +
Sbjct: 366 RSS 368


>gi|145631588|ref|ZP_01787354.1| predicted permease [Haemophilus influenzae R3021]
 gi|144982788|gb|EDJ90314.1| predicted permease [Haemophilus influenzae R3021]
          Length = 367

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 129/357 (36%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   T   L    F   +++  +       +N ++ +++      +
Sbjct: 122 PWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQK 181

Query: 183 --THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G    +    Q + L + +    + +  D  I  F  Y        +  
Sbjct: 182 QTKPSVVTAEKGELIALPNGDQVLNLKNTKRVEGTSVLPDFRITHFDEYRAYLGYQAAEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A +  LS L++ + ++           ++E H R+T  L   +  LI++       
Sbjct: 242 TNDEAAELTLSQLIDLDSSSA----------KAELHWRITLILAVPLMALIAVPL---SR 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLM 353
           +  ++ +   I  +L +    F   S               ++ L       + +++
Sbjct: 289 VNPRQGRFAKILPALLLYLIYFLLQSSFKSAGAAGKLEAELLMPLVNIGFFLLAVVL 345


>gi|270340118|ref|ZP_06007105.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332630|gb|EFA43416.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 395

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 117/360 (32%), Gaps = 8/360 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  + YI++    +++ S L I+ I+ V  + + +   S     L  I+       +P  
Sbjct: 36  KRIDWYIIKKFIGTYIFSILLIISISIVFDVNENLAKFSQYHAPLEAIVFDYYANFVPYF 95

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +     +      + +  N+E++ +  TG S   L++P +   +LL+   +     
Sbjct: 96  ANLFSALFVFISVIFFTSKLAGNSEIIAMLATGMSFKRLLRPYMITCVLLAGLSYYLSAY 155

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +      +     +  E          +       N      G  +    +
Sbjct: 156 VIPHGTVIRQNFETMYKNKHKNTSAENVQLQVGRGVIAYIQHYDNTMKKGYGFCLDKFEN 215

Query: 181 TQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +      A       I   +    L + ++ R   + + I+    K   +  E  +   
Sbjct: 216 KKLVSHLTAMEVQYDTISDSKYHWKLTNWKIRRLKGLREHITSGAEKDSVIMMEPTDLVY 275

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +        L +      +     +  Y+ E+HKR+       I  +I        +
Sbjct: 276 SKGQQETFTSPELKDYISKQIDRGSGNVVQYQVEYHKRIASSFASFILTIIGASL---SS 332

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R+      + I L++SF  +     +      N Y+ P+L  ++  I    +  +  +
Sbjct: 333 RKRKGGMGMYLGIGLALSFT-YIMMQTVSATFAINAYFPPMLAAWIPNIVFAVIAFVCYR 391


>gi|326796830|ref|YP_004314650.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
 gi|326547594|gb|ADZ92814.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
          Length = 353

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 107/356 (30%), Gaps = 4/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ YI   +  SF      ++ + + +  + ++  V + + + N LL++  Y  P  
Sbjct: 1   MSRFDRYIGSSVLWSFAAVIFVLLGLDFALTFIDQVKKV-NDSYTTNALLQVLAYRAPIK 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    + T   L ++   +EL +I  TG     +        +L+S+        
Sbjct: 60  FAEYIPVASLIGTLIGLGALASTSELTVIRATGVPIWRIGFAACKPILLISLIGVGISEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P        L  + +      +      +   D  ++ I+  +    L  I I     
Sbjct: 120 VSPYATQQ-ADLIERLRGQSEGRFALTGGVWIKSDGNFVYINAADREGVLYDIQIFTPNG 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               KI  A+     L      L             +    +   +T   + ++      
Sbjct: 179 QALEKIQKAKFAR-HLSDNQWRLEQVTETHFLGDRIETGYKETVPWTASLKPSHLFLASQ 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    +LS L +   +    +      Y+ EF  +           ++++ +        
Sbjct: 238 EPEALSLSEL-HQYQSYLTGQELNAGLYQLEFWTKSLMPFACFALVIVALSSVFGPLRSS 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                    + + I F         +         I +      C +   LLM +K
Sbjct: 297 TMGGRIFSGVLIGIMFQNGLNLFGKMSLALSFSPLIGVAIPIALCFAIGLLLMSRK 352


>gi|160898977|ref|YP_001564559.1| permease YjgP/YjgQ family protein [Delftia acidovorans SPH-1]
 gi|160364561|gb|ABX36174.1| permease YjgP/YjgQ family protein [Delftia acidovorans SPH-1]
          Length = 375

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 121/342 (35%), Gaps = 18/342 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + ++ +   + +++ +        S + +L + GY +   LP
Sbjct: 2   LFDSSIRKELARSFGATVVVLITVVMTMMLIRTLGQAYKGNVSPSDVLLVMGYTVLGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I    G    +L++P+L  A  +   + +    I 
Sbjct: 62  TILGLGLFVAVVGSLSRMYRDSEMVIWFAAGQGLASLLRPLLRFAWPVLAVIAVLGLGIL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     I+Q+  + +       +    F        +     +  +      +    + +
Sbjct: 122 PWANQQIEQIKTQFEQRSDIDRIAPGEFQESAGGSRVFFIDKDVPSATAANNVFIVANER 181

Query: 183 THKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +   +  G    +    +  +L DG+          + I +FK Y  Q  S ++    
Sbjct: 182 GRESVTSARGARLEVIKGERMAVLTDGQRMETQTSDGSVKISEFKEYGTQLGSGSNLAAA 241

Query: 240 LKANDQNL--SFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +   ++     LL          P     YR+E   R+   L  + F ++ +  A   +
Sbjct: 242 EEMAARSTYTHELL----------PRTEPIYRAELGWRIGLPLAALNFVILGLAVA---S 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
           +  +      + ++L      +   +   + +      +P +
Sbjct: 289 VNPRAGGSGSLMLALFAFIVYYNLMTLGENWVASGKLSMPAM 330


>gi|91774577|ref|YP_544333.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
 gi|91708564|gb|ABE48492.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
          Length = 361

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/365 (11%), Positives = 127/365 (34%), Gaps = 20/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  +L+ +  + +   L +  I    ++   I + +  + + + +  + G+ +   LP
Sbjct: 2   LFKRSLLQELVTTAIGGFLVLFGIVIAQRVAYYIGVAAKGSLASDAINTLLGFSMLKFLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +     L+  +R++E+++  + G    + I+PVL   + + + + +    + 
Sbjct: 62  MMLSLTLFLAVLLTLSRWHRDSEMVVWFSAGQGLSSWIRPVLTFGLPVIVVIALLSLFVT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +   + +     + +   +F        +   +           I       
Sbjct: 122 PWATGKGAEFRDQLKSRDELASISPGVFKESRHADRVFFVESFDELGNIVKNIFVQSMQH 181

Query: 183 THKIYYA----QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                         + +     +++ +G  +  +P + + SI +F+ Y ++ E A     
Sbjct: 182 QKLGIIVAARGHRETAENGDDFLVMQNGRRYEGTPNTAEYSITEFERYAIRIEPAEVQQQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                 +N   L N +  +            +E   RL   +   +  L++I  +    +
Sbjct: 242 PPNTQSKNSLELFNEHSPDS----------IAELQWRLAIPISAFVLILLAIPLSF---V 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIKK 356
             +  +   + ++L I        S +   +   + P  + +  +  F +  +   M  +
Sbjct: 289 DPRSGRSANLMMALLIYIVYNNLLSIMQAWLSQGKVPAMVGLWPVHAFFLL-LTFWMFYR 347

Query: 357 KYTKI 361
           +  ++
Sbjct: 348 RLFQL 352


>gi|222110916|ref|YP_002553180.1| permease yjgp/yjgq family protein [Acidovorax ebreus TPSY]
 gi|221730360|gb|ACM33180.1| permease YjgP/YjgQ family protein [Acidovorax ebreus TPSY]
          Length = 369

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/371 (12%), Positives = 122/371 (32%), Gaps = 17/371 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRIN---LVSSSTESLNILLKISGYLI 57
           MK+   +I R +        L  + + +   ++  +       ++   L+  L      +
Sbjct: 1   MKTIRRFIYREVVVGVAFVTLAFLALFFFFDMVDELRWVGRAGANGYQLSHALLFVALSL 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P  L  + P    + T  V+  + +++E  I+  +G      +  +L L     +   I 
Sbjct: 61  PQHLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALSTLLMLGCAFVMVTVIV 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEEN-LFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + I P        + A+    ++           + D  + + +   +PN  ++G+ + 
Sbjct: 121 GDYIAPASEKAASLVKARRLGQISTGATGAWLKERQGDHSIAVNVRAVDPNGAMRGVRVF 180

Query: 177 DSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK-----FKSYTLQT 230
           +            A+  + D  R A  L   E       +     +         +  + 
Sbjct: 181 EFDARGRVAATIQAEQATFDDARDAWNLQQVERTLFEAEADGGMRVSRLQEPTLRWPTRI 240

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                +  +LK +      L      +     +  + Y  EF +++   L  ++  ++S+
Sbjct: 241 SPDMVAASLLKPDKMATIELFR-FVRHLEANGQSAQRYEIEFWRKVFYPLSCLVMVVLSL 299

Query: 291 VAADKRALVRQ--RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY---IPILYLFLFC 345
             A                +   +S  F +   F +  +    +P+     P L   +  
Sbjct: 300 PFAYLHFRSGGIAGYVFGGVMAGISF-FLLNNVFGFAGNLQNWSPWLTAAAPGLIYSVLS 358

Query: 346 ISSIFLLMIKK 356
           +++   L++++
Sbjct: 359 LAAFGWLVLRR 369


>gi|34763639|ref|ZP_00144568.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|294785395|ref|ZP_06750683.1| permease, YjgP/YjgQ family [Fusobacterium sp. 3_1_27]
 gi|27886692|gb|EAA23836.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|294487109|gb|EFG34471.1| permease, YjgP/YjgQ family [Fusobacterium sp. 3_1_27]
          Length = 359

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 119/340 (35%), Gaps = 5/340 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  SIF+   +  
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIIFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    +K + AK         L+E  F    D+  I + K + +   + I   +  +
Sbjct: 121 IIPRSFIKLKYVGAKIAYENPVFQLKEKTFIDNLDEYSIYVDKVSSDGKAKNIIAFEKPE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
            +                 AIIL + +        K   +  F    +   +   + +  
Sbjct: 181 DKNKFPMVLTGEEAFWKDSAIILKESQFVSFDETGKKNLVGTFDEKKVVLTAYFQDLNIK 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           +      +++ L+             +  Y+ E  ++L      +   +I    +     
Sbjct: 241 IKDVEALSITDLIKGIKKVEATE---VIKYKIEIFRKLALVFSTIPLAVIGFCLSLGHHR 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
           + ++       I +            +    + NP+    
Sbjct: 298 ISKKYSFILAMIIVFAYIIFLNIGIVMATAGKLNPFIATW 337


>gi|253997571|ref|YP_003049635.1| permease [Methylotenera mobilis JLW8]
 gi|253984250|gb|ACT49108.1| permease YjgP/YjgQ family protein [Methylotenera mobilis JLW8]
          Length = 374

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/353 (11%), Positives = 114/353 (32%), Gaps = 15/353 (4%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +++ +  +   + L ++ I    +    + L +      + +  I G+ +   LPMV   
Sbjct: 7   LIKELISTAAGAFLILIGIVVAQRAGTLVRLAAKGILPNDAITTILGFNMVKFLPMVLSL 66

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +     L+   R++E++I  + G S    ++PVL     + +F+      + P   S
Sbjct: 67  SLFLAVLMTLSRWYRDSEMVIWFSGGLSINNWVRPVLTFIFPVILFILALSLFVMPWATS 126

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             +    + +     + +   +F    +   +   +           I            
Sbjct: 127 KGELYRTQLEARDDLATISPGVFKESANGDRVFFMESFDELGNVVKNIFVQTMQHQKLGV 186

Query: 188 YAQ----SGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
                    +       +++ +G+ +     S + S   F+ Y ++ E+  +        
Sbjct: 187 IVAAQGSRYTEKNGDNFVLMENGKRYEGRRGSAEFSTTTFEKYAIRIEAKEAKEEPPSTQ 246

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
            ++   L++              T ++E   RL   +  +I  L++I  +       +  
Sbjct: 247 SKSTKELVS----------SANSTNKAELQWRLAIPISALILSLLAIPLSALDPRAGRSA 296

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                 +   I   +   F     + + +   + +  +  F +     L  ++
Sbjct: 297 NFILALVIYIIYNNLLSIFQAWTAQGKLS-ALVGLWPVHAFFLLLTIYLFRRR 348


>gi|323966510|gb|EGB61943.1| permease YjgP/YjgQ family protein [Escherichia coli M863]
 gi|327251763|gb|EGE63449.1| hypothetical protein ECSTEC7V_3615 [Escherichia coli STEC_7v]
          Length = 359

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 122/354 (34%), Gaps = 3/354 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGTIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRFALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                  + + + +    +  +  +++         P+  L L     +  L +
Sbjct: 300 --GMGSRLAVGVIVGLLTWSSYQIMVNLGLLFALSAPVTALGLPIAFMLVALSL 351


>gi|319941841|ref|ZP_08016163.1| hypothetical protein HMPREF9464_01382 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804774|gb|EFW01641.1| hypothetical protein HMPREF9464_01382 [Sutterella wadsworthensis
           3_1_45B]
          Length = 377

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/380 (9%), Positives = 124/380 (32%), Gaps = 26/380 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M        + I  S +   + ++ +     ++ +++ + +   ++      +   +P+ 
Sbjct: 1   MSVISRQFAKDILLSTIFVLIVLIALFAFFDLIGQLDDLGAD-YTIGRAFLTTSLTLPSR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    + +   ++     +E  ++  +G S   L + +L   ++  +  +    I
Sbjct: 60  AYEVMPLAVLLASVYTMSKWASTSEFTVLRASGCSPWRLARSLLIPGVICVLATYGLGEI 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYL------------EENLFFRLDDDLYIKISKYNPNN 168
           + P  +   +++ +    +L+                 E+       ++    +      
Sbjct: 120 VAPAAQRFAQEVRSGTNASLSIRGFASGAWVRDVINSPEDGRVERYINVRNLSASDRQLT 179

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ------AIILNDGEVHRKSPISKDISIMK 222
               +F  +  D +  ++  A+SG              I        + +P    ++   
Sbjct: 180 GAWRMFEFNRDDGRLLRLVRAESGRWTGTGWELTNAVIIHYPAVTATKDAPQQGSVTTEH 239

Query: 223 FKSYTL-QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
             +  L  T + +  +++    D+     LN    + +   +  E Y S F  +      
Sbjct: 240 VDALKLTSTVNPDILSVMTTKPDRMSMDELNRFIEHLDQVHQDTEHYVSVFWSKAFYPFI 299

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
            ++   +++  A   A  R       IF  + +    +   +  ++    +     ++  
Sbjct: 300 CLVMLAVAMPFAYMNA--RSGGMAVKIFCGVLVGIAFYALNNIFLYLSVLSSMPPALMAA 357

Query: 342 FLFCI----SSIFLLMIKKK 357
               +    +++ L  ++++
Sbjct: 358 LPSILMCFAAALSLWWLERR 377


>gi|134296646|ref|YP_001120381.1| permease YjgP/YjgQ family protein [Burkholderia vietnamiensis G4]
 gi|134139803|gb|ABO55546.1| permease YjgP/YjgQ family protein [Burkholderia vietnamiensis G4]
          Length = 363

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 121/361 (33%), Gaps = 15/361 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFIEKMSPDQSKVQNVFVTSTEN 181

Query: 183 THKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                              + ++L DG  +  +P   +  IM+F+ Y ++  S   + + 
Sbjct: 182 GKVNVVVSHAGHTETRDGDRFVVLEDGRRYDGTPGQPNFKIMEFQRYGVKITSTPVTNVP 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRAL 298
              +      L NP  NN            +EF  R    L  +   ++ I  +      
Sbjct: 242 TTNSTPTPELLSNPTRNNL-----------AEFAWRAGLPLIAINLMVLGIPLSYQNPRR 290

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R    +  + I L+ S  +    + I          +  L+L +  I ++   +  +  
Sbjct: 291 SRTINLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHLAVAAIVAVIFWLRVRNR 350

Query: 359 T 359
            
Sbjct: 351 P 351


>gi|284037837|ref|YP_003387767.1| permease YjgP/YjgQ family protein [Spirosoma linguale DSM 74]
 gi|283817130|gb|ADB38968.1| permease YjgP/YjgQ family protein [Spirosoma linguale DSM 74]
          Length = 358

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 132/358 (36%), Gaps = 7/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNIL-LKISGYLIPT 59
           MK  + YIL+   ++++   + IV +  +I   ++++    +    N +        IP 
Sbjct: 1   MKLLDAYILKRFLQTYIFVVMVIVLVVVMIDYTEKVDNFHKTHAPGNEILFNYYLNFIPY 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
               ++P    + T  + + +   TE++ I ++G S + L+ P +  A +L++  +   N
Sbjct: 61  WANYISPLMVFIATVFLTSRLAARTEIIAILSSGVSFVRLLLPYVLGATVLAVATYFMVN 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + PK   T      K                   +      S  N +NT     +    
Sbjct: 121 YVIPKANKTRIAFEIKYINDAYNFSGRNVHLKIAPNTYAYLESYNNQSNTGYKFTMERVE 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             Q  +   A     D  ++   + D ++   +   + ++       TL  +  + S+  
Sbjct: 181 GNQLKQKLSADHIEWDAKKKKWTVFDYKIRTINGPQETLTPGAKIDTTLNLKPDDFSSDF 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                     L +      +   + +ETY  E + R T+    +I  +I ++     A  
Sbjct: 241 NLYETLTRPELNDHIELLQSRGADGVETYLLEKYSRDTRPFAIIILTVIGVI---MSARK 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF--CISSIFLLMIK 355
            +R     + +   ++F  +  F  +   I ++    PI+ ++L     ++I +L+  
Sbjct: 298 SRRGVGWQVALGFFLAFT-YLLFFMLAKGIAESGNLNPIVAVWLPNAIFAAIGVLLYN 354


>gi|330720484|gb|EGG98783.1| putative permease [gamma proteobacterium IMCC2047]
          Length = 343

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/339 (12%), Positives = 119/339 (35%), Gaps = 22/339 (6%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           +    ++++ I+ V+S   + + L  +  + +P +L MV P    +    V   M    E
Sbjct: 1   MVLTSRLVRYISEVASGDIAADFLFYLIVFRLPDILLMVLPISLLLAILLVFGRMYIENE 60

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           + +   +G S   L    +    L+S+ +      + P     + +L  +      F  +
Sbjct: 61  MAVFSASGVSLKKLAVYAMASVSLVSLTVAALSFSLAPWGLKKVDELFVENANRTVFETV 120

Query: 146 EENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDR------- 198
               F  + +D     ++   ++      +  +R+    K  +                 
Sbjct: 121 RAGRFSPMGEDNMSLYAERLSDDQRVMSDVFIAREANGKKSNFQIMAEQGYLEVKPNSLA 180

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNP 258
           + +IL +G  +   P S+D  + +F+++ ++  S                 LL  + +  
Sbjct: 181 KYLILKNGYRYEGDPGSRDYKVTQFETFGIKLSSPPEQVKENSTRGMATGELLKLDSSTA 240

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
                      +E   R++  L   I  L+ +       +  ++ + + +  ++   F  
Sbjct: 241 ----------IAELQWRISLPLLVPIIALLGVPL---SRVNPRQGRFYFLIPAMLFYFAY 287

Query: 319 FWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLMIK 355
               S +   +E+N    ++ + ++ +  +    L+ + 
Sbjct: 288 LVLLSGMKTAVEENTISPWLGLWWVHVMFLCLALLVFLN 326


>gi|325917725|ref|ZP_08179913.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
 gi|325536054|gb|EGD07862.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
          Length = 368

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/363 (11%), Positives = 105/363 (28%), Gaps = 11/363 (3%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V         +   + S    +    Y +P     +
Sbjct: 9   DWYVGRVVLFTVLLTWAVLLGLDLVNAFASEAKNIGQGSYSFGHAVAFVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   + P 
Sbjct: 69  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETVGPW 128

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI--------SKYNPNNTLQGIFIV 176
            ++    L   A+     +    +  +  + + ++          +      +L  + + 
Sbjct: 129 AQNQADTLKTSARYNSDMAMARYSGLWAREGNTFLNALGGEEKLLANGGTALSLHDVRLY 188

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +       +     S +   D     L           S          +  Q   A  +
Sbjct: 189 NLDTNGRLQQLTYASVAEHRDG-RWTLRQVRRDTFQDRSVQRETFPELPWQSQLSPAALA 247

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           + + K  + +   L   +             Y  ++  R    L  +   + +I  +   
Sbjct: 248 SGLAKPRNLSAHEL-QQSIEYRRRNGLDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGS 306

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  K   + I  ++ F +   F            Y     L    +  +   + ++
Sbjct: 307 LRSGGLGKRLFLGILFALGFWLLQLFFG-RMAGALKLDYRIAYALPPMVMLGVSAWLFRR 365

Query: 357 KYT 359
           + +
Sbjct: 366 RSS 368


>gi|296327425|ref|ZP_06869972.1| YjgP/YjgQ family permease [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296155438|gb|EFG96208.1| YjgP/YjgQ family permease [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 363

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 117/362 (32%), Gaps = 11/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++YI +   + FLM+ +  + +  + Q  + I  ++    +   +      L+P + 
Sbjct: 3   KKMDIYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLAGGEIFDYILNLLPKMF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     ++ M  N E++ +  +G   + +++  L +A ++S+F+F   N I
Sbjct: 63  VETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLFVFFVNNSI 122

Query: 122 EPKCRSTIKQLSA-----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
             K  + I            +L  T               L  KI++         +   
Sbjct: 123 YTKSLAKINFYRRGEIDETLKLPTTKENAFFINNTEGYLYLMGKINRETGLAENIEVVKF 182

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           ++  ++  +I  A+S   D +    I ++  ++               +      S    
Sbjct: 183 NTEISKPKEIITAKSAKFDTEENKWIFSNVNIYNVETKETTAKTEYKSNLYKDDPSNFIR 242

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                     +  L        N   E    Y +E  KR +      I   I +      
Sbjct: 243 ASAEDPRMLTIKELKKTIKEQKNI-GEDTRIYLAELAKRYSFPFASFIVAFIGLSV--SS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
             VR  +    + I +   +G +   S     +  N    P +  ++       I +  +
Sbjct: 300 KYVRGGRTTMNLVICVVAGYGYYLV-SGAFEAMSLNGILNPFIASWVPNILYLIIGIYFM 358

Query: 355 KK 356
            +
Sbjct: 359 NR 360


>gi|188993098|ref|YP_001905108.1| Predicted YjgP/YjgQ family permease [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734858|emb|CAP53069.1| Predicted YjgP/YjgQ family permease [Xanthomonas campestris pv.
           campestris]
          Length = 368

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/371 (12%), Positives = 104/371 (28%), Gaps = 15/371 (4%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK      + Y+ R +  + L++   ++ +  V         +   + S    +    Y 
Sbjct: 1   MKLMPRVHDWYVGRAVLFTVLLTWAVLLGLDVVNAFASEAKSIGQGSYSFGHAIAFVAYT 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P     + P    +     L  +   +EL  +   G SR  +   V+    LL+  + I
Sbjct: 61  VPRRAYTLFPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVVAMALLTATMVI 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI--------SKYNPNN 168
           S   + P  +S    L   A+     +    +  +  + D ++                 
Sbjct: 121 SGETVGPWAQSQADTLKTSARYQSDMTSARYSGLWAREGDTFLNALSGEEQLLDNGGTAL 180

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           TL  + +         +     + +   D     L           S          +  
Sbjct: 181 TLHDVRLYHLDAKGQMQQLTYAAVAEHRDG-RWTLRQVRRDTFQERSVQRETFPELPWQS 239

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
           Q      +  + K  + ++  L   +             Y  ++  R    L  +   L 
Sbjct: 240 QLNPKALAAGLAKPRNLSVHDL-GQSIEYRRRNGLDASDYEDQYWSRWFYPLNVLALCLA 298

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           +I  +          K   + I  ++ F +   F            Y     L    +  
Sbjct: 299 AIPFSFGSLRSGGLGKRLFLGILFALGFWLLQLFFG-RMAGALKLDYRIAYALPPMVMLG 357

Query: 349 IFLLMIKKKYT 359
           +   + +++ +
Sbjct: 358 VSAWLFRRRSS 368


>gi|308272620|emb|CBX29224.1| hypothetical protein N47_J02050 [uncultured Desulfobacterium sp.]
          Length = 356

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 122/354 (34%), Gaps = 4/354 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ + I + F +    I+ I  V+       +   S  +           +P  
Sbjct: 3   MSIIDRYLTKEILKYFCIIIAAIIGIYIVVDFFDETEIFFESGLAFPTAFFCFISKMP-- 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +        M++N E++ I + G S   L++P+L +  +    +      
Sbjct: 61  IAQFIPLSVLLSILVTFGLMSKNNEIVAIKSGGISIYHLLRPILLIGSVFFCVVIFLSEA 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +S  +++  +A        L+E   +    +L   I  Y+ +        +   D
Sbjct: 121 VVPITKSKAEKILTQANRKKFAMALKEKDIWIKGHNLITHIEYYDSSKKTIHGIKLYFFD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   +          ++   IL D    +    + +IS  K     L     +   + +
Sbjct: 181 DKFRVVRRIDCEKGVFNQGNWILYDIIEQKLDKNNSEISFHKQLIEHLVFSPDDIGVVAV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            +   +   L +      +       TYR++F+ +L+     +I   +    A +     
Sbjct: 241 TSESMSAFELYDYIKKIESE-GYDATTYRTDFYAKLSFPFICIIMCFVGTGIAFRLGAKE 299

Query: 301 QRKKIHPIFISLSISFGVFWGF-SYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                    I  + S+ VF+GF   +      NP++  ++   +F    IF ++
Sbjct: 300 SLPVNIVYGIGAAFSYWVFFGFCISLGEGGILNPFFAALIPNLVFLGFGIFTVL 353


>gi|88810918|ref|ZP_01126174.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
 gi|88791457|gb|EAR22568.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
          Length = 358

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/370 (11%), Positives = 111/370 (30%), Gaps = 23/370 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E Y++  + R  +     +  I     + + +    S T  +  +  +        
Sbjct: 1   MLLIERYLIAEVRRPLVAVVGVLSLIFASYSVARYLADALSETLGMQAVALMVALRTLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P          L  +  + E+ ++   G S   +   +L LA+ +++ +      
Sbjct: 61  LEVLIPVALYASVVIGLGRLYNDQEMTVLGAVGISSARVYWAILLLALPVALAVGALSLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P       Q  A A + +    L    F+       + +++   +       ++  + 
Sbjct: 121 GRPWAYQQAYQAEAHAHVEIPLDRLRAGHFYVESQTGRMILAQEVDDQRGLLHGVLIYQR 180

Query: 181 TQTHKIYYAQSGSI-----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                       +        D   +IL+DG  +          I++F   +L+ +    
Sbjct: 181 AGEATYLTKARQARQLPTEQADEARLILHDGVTYLLDQAGSHDRILRFGELSLRLQQPQP 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                +      +   + NP              +E   RL++ L  V+  L  +     
Sbjct: 241 VVGYKRKAAPTAALARSGNPAEL-----------AELQWRLSRPLTTVLLALFGVP--LS 287

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           R   R+ +    +  +L  +                    +P ++     +  + + +I 
Sbjct: 288 RTAPRRGRFSKILLAALVYALIYSASGLAKTWVEHGVVGAVPGIWWINAVMFVVLVALIS 347

Query: 356 K-----KYTK 360
                 ++ +
Sbjct: 348 HDLQWWRWPR 357


>gi|293406596|ref|ZP_06650522.1| predicted protein [Escherichia coli FVEC1412]
 gi|298382335|ref|ZP_06991932.1| predicted protein [Escherichia coli FVEC1302]
 gi|291426602|gb|EFE99634.1| predicted protein [Escherichia coli FVEC1412]
 gi|298277475|gb|EFI18991.1| predicted protein [Escherichia coli FVEC1302]
          Length = 342

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 111/315 (35%), Gaps = 1/315 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +  +   ++     S N   + +
Sbjct: 208 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMNLEELSM 267

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 268 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 326

Query: 301 QRKKIHPIFISLSIS 315
                  + + + + 
Sbjct: 327 GMGSRLAVGVIVGLL 341


>gi|315608793|ref|ZP_07883769.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315249487|gb|EFU29500.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 416

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/363 (12%), Positives = 109/363 (30%), Gaps = 7/363 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  + YI++    ++  S   I+ IA V    + ++  +        I+       IP  
Sbjct: 57  KILDWYIIKKFIGTYFFSIALIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFIPYY 116

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ +   G S   L++P +   +L++   +     
Sbjct: 117 SNLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMISCVLIAALTYYLGAY 176

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P      +   A  +     +  +          +       N      G  +    D
Sbjct: 177 EIPHGTVIRQDFEALYRNNTKNTAADNVQLQVDKGVIAYIQHYDNNTKKGYGFKLNKFED 236

Query: 181 TQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +      A       I   +    + + +  +   + + I+    K   +  E  +   
Sbjct: 237 KKLVSDLTAMEVQYDTISDTKFHWRMRNWKQRKLQGLKEHITSGAEKDTVILMEPTDLVY 296

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +        L        +     +  Y+ E+HKR+       I  +I +      +
Sbjct: 297 SKGQQETFTSPELREYISKQIDRGSSNVVQYQVEYHKRIATSFASFILTVIGLSL---SS 353

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R+      + + L++SFG     +              +       + +I    + +K
Sbjct: 354 RKRKGGMGLYLGLGLALSFGYIMLQTVSATFAINAGAPPMLAAWTPNMVFAIVAYFLYRK 413

Query: 358 YTK 360
             K
Sbjct: 414 APK 416


>gi|289663726|ref|ZP_06485307.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289668603|ref|ZP_06489678.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 368

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/364 (10%), Positives = 104/364 (28%), Gaps = 13/364 (3%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V         +   + +    +    Y +P     +
Sbjct: 9   DWYVGRVVLSTVLLTWAVLLGLDLVNAFASEAKNIGQGSYTFGHAVAYVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   I P 
Sbjct: 69  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPW 128

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI--------SKYNPNNTLQGIFIV 176
            ++    L A A+     +    +  +  + + ++                  L  + + 
Sbjct: 129 AQNQADTLKASARYNSDMASSRYSGLWAREGNTFLNALSGEEKLLDGGGTALDLHDVRLY 188

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
               +   +     S +   D     L           S          +  Q   A  +
Sbjct: 189 HLDPSGRMQQLTYASVAEHRDG-RWTLRQVRRDTFQERSVQRETFPELPWQSQLNPAALA 247

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + K  + +   L   +             Y  ++  R    +  +   + +I  +   
Sbjct: 248 AGLAKPRNLSAHDL-EQSIEYRRRNGLDARDYEDQYWSRWFYPVNVLALCMAAIPFSFGS 306

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFLLMIK 355
              R       +F+ +  + G +    +           Y     L    +  +   + +
Sbjct: 307 L--RSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFR 364

Query: 356 KKYT 359
           ++ +
Sbjct: 365 RRSS 368


>gi|91203264|emb|CAJ72903.1| hypothetical protein kustd2158 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 357

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 116/354 (32%), Gaps = 7/354 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTV 60
              + Y+L+    +F +  L I     +I +LQ+++        S  +  +   YL P +
Sbjct: 3   SRLDRYLLKAFFPTFFLCLLIISGTYVIIDLLQKLDDFLEMGINSFGVASRYYAYLFPVI 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +    VL  ++RN E+L +   G S   ++ P+  + + +    F  +  
Sbjct: 63  ITQFFPAITLVAVGIVLVRLSRNKEILAMQVAGISLYRILLPIFVVTVFMGFASFGDQEW 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    ++ +      +     L  +           K S          +FI+   +
Sbjct: 123 IVPRFAEKLEAMQQNTFDSDVQRNLLVHDDENNALIRIWKYSNKTQKMD--SVFILSRDE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +       +  +     +L+    H      + ++ +          S     +  
Sbjct: 181 NGKKRFTLNAKKAEWIGNNTWVLSKILKHVYDERGRWVAPVHRLDTLEFVSSVTPLELGK 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K  D +L  L     N    +       +  FH R+   L  ++   + I        + 
Sbjct: 241 KKLDSSLLSL--EQLNELCEKEPDNPKNKVLFHSRIAYTLTHIVLLFLGIPLVVGFERMS 298

Query: 301 QR--KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           +    ++    ++  + + V +  S + +    +P     + + LF    IF  
Sbjct: 299 KNIFLRVSLCILACGVFYAVSFICSNLGNTGMVHPVLAAWMPIVLFGSVGIFFF 352


>gi|33240287|ref|NP_875229.1| putative permease [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33237814|gb|AAP99881.1| Unclassified ABC-type transport system permease [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 403

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/374 (14%), Positives = 130/374 (34%), Gaps = 25/374 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++ R +   F  +      ++  +  +   +  +  S  +L   L++    +P+ L
Sbjct: 32  LLDRWLFRELLPPFFFAISAFTVVSLSVGVMFDLVRKIVESGLALKFALQVFFLKLPSFL 91

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M T    + ++ N+E+  + + G S   +I   + L +L++   FI  ++I
Sbjct: 92  VISFPMAILMATLLTFSRLSSNSEVKALKSIGISTKRMIVAAITLGLLMTGITFIFNDLI 151

Query: 122 EPKCRS-------------TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN 168
            P                            +     ++ +     D   ++  +K   N 
Sbjct: 152 VPSANKSAEATLRRGLGVSMHSDYVTDIMYSRFGKIVDPSSNISRDGMTHLFYAKEFQNK 211

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           T+  + ++D       ++  A+ G  +        +DG +   +P     S + F++Y  
Sbjct: 212 TMIDVTLLDFSRLGYKQMLVAKKGYWNNLEANWEFHDGNILTIAPNGGSTS-ISFENYVY 270

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNY----RPELLETYRSEFHKRLTQWLFPVI 284
             +S     I     D N   L +       Y      + +        ++ T  +  V+
Sbjct: 271 PLDSGPKK-IAKIPKDANYMTLSDAYKAKDLYKLSGNLKEVRRMEVRIQEKFTLPMACVV 329

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           F LI    A        + +   + I L ++   ++  S++   +  +    P +  +  
Sbjct: 330 FSLIGSSLACSPNTRSTQGQGFALSIVLILA---YYILSFVFSSLGVSGALSPFVGAWSP 386

Query: 345 CISSI--FLLMIKK 356
            I S+   L ++ K
Sbjct: 387 VIISLSGGLYLLNK 400


>gi|24114287|ref|NP_708797.1| hypothetical protein SF3026 [Shigella flexneri 2a str. 301]
 gi|30064334|ref|NP_838505.1| hypothetical protein S3227 [Shigella flexneri 2a str. 2457T]
 gi|24053443|gb|AAN44504.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30042591|gb|AAP18315.1| hypothetical protein S3227 [Shigella flexneri 2a str. 2457T]
 gi|281602370|gb|ADA75354.1| putative permease, YjgP/YjgQ family [Shigella flexneri 2002017]
 gi|313648097|gb|EFS12543.1| hypothetical protein SF2457T_3697 [Shigella flexneri 2a str. 2457T]
 gi|332752655|gb|EGJ83040.1| hypothetical protein SFK671_3613 [Shigella flexneri K-671]
 gi|332754439|gb|EGJ84805.1| hypothetical protein SF274771_3586 [Shigella flexneri 2747-71]
 gi|332765461|gb|EGJ95679.1| hypothetical protein SF293071_3543 [Shigella flexneri 2930-71]
 gi|333014735|gb|EGK34080.1| hypothetical protein SFK304_3819 [Shigella flexneri K-304]
          Length = 359

 Score =  100 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 124/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDGVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  +L+     +     + +  +   ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    Y     ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYHLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 357


>gi|46580073|ref|YP_010881.1| permease [Desulfovibrio vulgaris str. Hildenborough]
 gi|120602469|ref|YP_966869.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris DP4]
 gi|46449489|gb|AAS96140.1| permease, putative [Desulfovibrio vulgaris str. Hildenborough]
 gi|120562698|gb|ABM28442.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris DP4]
 gi|311233928|gb|ADP86782.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris RCH1]
          Length = 360

 Score =  100 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/362 (12%), Positives = 107/362 (29%), Gaps = 12/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+ R   +  L +      +  +  +  R++ +  +    N+ +       P +
Sbjct: 1   MTLLFRYLFRNNLQVILPTLAVGTGLYLLSDLFDRLDDILEAGVPGNVAIWYFVAKTPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P  F +     L  M+R+ EL+ +   G S   + +  +   +L ++       +
Sbjct: 61  ISQILPAVFLLAALIQLCLMSRDRELMALQAGGVSFGAIARFFVVYGLLWAVLQLGFSQV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           +         ++  +     T    +    +  DD+  I +    P       F      
Sbjct: 121 LGVAGERESARIWQEQVRGRTPGTRDLTNVWFTDDNHVIHLEVVTPALRKGQGFAAYGLA 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
               H     ++ +         L D EV                +     +        
Sbjct: 181 ADGIHIDTVIRAKAFTGTAGTWKLQDVEVFSTRDFGHAKLPEMSIAIGQDPQDFAVIDPG 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                  L  L +            +E  R+ +H +L      V+ GL+++         
Sbjct: 241 ADPQRLPLWQLGDAVEK-LRTAGSNVEGLRTAWHMKLAYAASLVVMGLLAVAMVTW---- 295

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMIK 355
            +        ++L  +F  +  F  I   + Q     P +  +    L  + +   L++ 
Sbjct: 296 -RDNIYLATGLALVFTFLFYTMF-TIGSTLGQKGIVSPPIAAWGADILVGVVASARLLLV 353

Query: 356 KK 357
            +
Sbjct: 354 LR 355


>gi|295690097|ref|YP_003593790.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
 gi|295432000|gb|ADG11172.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
          Length = 400

 Score =  100 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 121/364 (33%), Gaps = 11/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+LR +    +      V    + +IL+ ++ +S S+     + +++  L+P  
Sbjct: 6   MRLIDRYLLRLLFWPLVGCLGVTVVALLLERILRLLDALSQSSARFGYVAQLAANLVPHY 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P  F +    V+  ++  +E+  +  +G S   +  P L + + LS+F  I    
Sbjct: 66  LGLALPVAFFVALFIVIAKLSDGSEVDALLASGQSLERIAAPFLAVGLFLSVFSLIVFGY 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P  R   + +   A  A     L    F      L    S      +L  +FI     
Sbjct: 126 MQPYSRYAYRAVMHAAINAGWNGRLAGGAFIDDKGSLLTADSADIAGQSLTRVFIRRLDA 185

Query: 181 TQTHKIYYAQSGSIDLDR----QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN-- 234
               +I  A S ++ +D       + L DG        +     + F S T QT  A   
Sbjct: 186 KGREEIITAGSANLKMDPGGKTVTMDLRDGR-RIVRDDNGQYRNLAFNSLTTQTPLAAAA 244

Query: 235 --SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                      +  L  L         +      T  SE + RL +  F     L++   
Sbjct: 245 VLLRDRGGDERELTLGEL--ATQAKSPHPVVSKSTLLSELYGRLARAAFLPFLPLLAFPL 302

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                   +   +    + L            +    +        +   LF   +++L 
Sbjct: 303 GLASKRGNRAAGLIMAGVLLLAFQHALLLGQSLAKADKVAAAPAIWIPFALFSSFAVWLF 362

Query: 353 MIKK 356
           +  +
Sbjct: 363 LGSR 366


>gi|169797502|ref|YP_001715295.1| hypothetical protein ABAYE3538 [Acinetobacter baumannii AYE]
 gi|184156574|ref|YP_001844913.1| permease [Acinetobacter baumannii ACICU]
 gi|213155684|ref|YP_002317729.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB0057]
 gi|215484938|ref|YP_002327177.1| hypothetical protein ABBFA_003301 [Acinetobacter baumannii
           AB307-0294]
 gi|239502070|ref|ZP_04661380.1| hypothetical protein AbauAB_07127 [Acinetobacter baumannii AB900]
 gi|260556394|ref|ZP_05828613.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii ATCC
           19606]
 gi|301346543|ref|ZP_07227284.1| hypothetical protein AbauAB0_09866 [Acinetobacter baumannii AB056]
 gi|301512955|ref|ZP_07238192.1| hypothetical protein AbauAB05_15269 [Acinetobacter baumannii AB058]
 gi|301594833|ref|ZP_07239841.1| hypothetical protein AbauAB059_03452 [Acinetobacter baumannii
           AB059]
 gi|332851502|ref|ZP_08433499.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013150]
 gi|332866798|ref|ZP_08437202.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013113]
 gi|332874942|ref|ZP_08442793.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6014059]
 gi|169150429|emb|CAM88326.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii AYE]
 gi|183208168|gb|ACC55566.1| predicted permease [Acinetobacter baumannii ACICU]
 gi|193076100|gb|ABO10704.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
 gi|213054844|gb|ACJ39746.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB0057]
 gi|213988459|gb|ACJ58758.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294]
 gi|260410449|gb|EEX03748.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii ATCC
           19606]
 gi|322506461|gb|ADX01915.1| permease [Acinetobacter baumannii 1656-2]
 gi|323516340|gb|ADX90721.1| permease [Acinetobacter baumannii TCDC-AB0715]
 gi|332729955|gb|EGJ61286.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013150]
 gi|332734406|gb|EGJ65526.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013113]
 gi|332736885|gb|EGJ67861.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6014059]
          Length = 356

 Score =  100 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/356 (11%), Positives = 113/356 (31%), Gaps = 4/356 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ +    +   + + +  +  +   L  +  +     +         +  P  L
Sbjct: 5   RIVAKYVTKTTALAMFGTTIVLSVLQILFTYLGELGEL-KPDYNAWQAFIYVLWGAPRYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L ++  N+EL+++ + G S   ++  V+  A+LL +  F     +
Sbjct: 64  YEILPISALIGAVIGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      + + +   +A                      +       +Q   +  ++D 
Sbjct: 124 VPYTNEKAQSVKSHRSVAALGEVKGYWSREGQRFIYIDYANSQGNLRDIQ--VVDFNKDY 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
               +  A+ G    D Q  +    ++   +  +  ++    +S  L  +      + L 
Sbjct: 182 HLQSLINAEQGKFIQDGQWTLQKASQMDILTDGNSILNNHDQQSLGLALQPKYVHMVTLD 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             D + S L++       Y  ++ +TY+  F +++      +   L++          + 
Sbjct: 242 PEDLSPSQLISFMRYMDEY-SQVPKTYQLAFWQKVASPFSLITLVLVACSFIFGPLRQQS 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I + + + F     F      +        +L   +    +   L+ + +
Sbjct: 301 MGFRLVIALFIGLGFYYLQDFLGYASLVYAPSPAWFVLMPIILMFGAGSYLLYRAR 356


>gi|254251665|ref|ZP_04944983.1| hypothetical protein BDAG_00857 [Burkholderia dolosa AUO158]
 gi|124894274|gb|EAY68154.1| hypothetical protein BDAG_00857 [Burkholderia dolosa AUO158]
          Length = 364

 Score =  100 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 122/362 (33%), Gaps = 16/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEVDPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIIVLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKMIKARFQQRDEISLLAPGQFRESAANHRVFFIEKMTPDQSKVQNVFVTSTEN 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + +     + ++L DG  +  +P   +  IM+F+ Y ++  S     +
Sbjct: 182 GKVNVVVSQTGHTETSKDGDRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSKPIVNV 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRA 297
              +    L  L NP  +N            +EF  R    L  +   ++ I  A     
Sbjct: 242 PTTSGTPTLELLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIPLAYQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    + I          +  L++ +  I +    +  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHVIVAAIVAFIFWLRVRN 350

Query: 358 YT 359
             
Sbjct: 351 RP 352


>gi|145637645|ref|ZP_01793300.1| molybdate ABC transporter permease protein [Haemophilus influenzae
           PittHH]
 gi|145269168|gb|EDK09116.1| molybdate ABC transporter permease protein [Haemophilus influenzae
           PittHH]
          Length = 367

 Score =  100 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 129/357 (36%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   T   L    F   +++  +       +N ++ +++      +
Sbjct: 122 PWAIQKQVNIVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQK 181

Query: 183 --THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G    +    Q + L + +    + +  D  I  F  Y        +  
Sbjct: 182 QTKPSVVTAEKGELIALPNGDQVLNLKNTKRVEGTSVLPDFRITHFDEYRAYLGYQAAEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A +  LS L++ + ++           ++E H R+T  L   +  LI++       
Sbjct: 242 TNDEAAELTLSQLIDLDSSSA----------KAELHWRITLILAVPLMALIAVPL---SR 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLM 353
           +  ++ +   I  +L +    F   S               ++ L       + +++
Sbjct: 289 VNPRQGRFAKILPALLLYLIYFLLQSSFKSAGAAGKLEAELLMPLVNIGFFLLAVVL 345


>gi|332187157|ref|ZP_08388897.1| hypothetical protein SUS17_2305 [Sphingomonas sp. S17]
 gi|332012857|gb|EGI54922.1| hypothetical protein SUS17_2305 [Sphingomonas sp. S17]
          Length = 399

 Score =  100 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 124/362 (34%), Gaps = 10/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MKS + Y+ R I      + +    +  + +I +    V++    ++++ ++   L+P  
Sbjct: 1   MKSIDRYMARLIALPLFATLIIAAMLLVLDRIRRLFEFVATEGGPISVVWRMLANLLPEY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +        +  ++EL ++   G S   L++     AI+L+         
Sbjct: 61  LGLGIPIGLMLGILLAFRRLATSSELDVMRGVGMSYTRLLRVPYMYAIVLAALNLAIVGY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-YNPNNTLQGIFIVDSR 179
           ++P  R   + L  + +     + ++   F  L + + ++I +  +    L GIF+  + 
Sbjct: 121 VQPIARYYYEGLRYELRTGALGASIKVGEFTHLGNRMTLRIEESRDSGRDLSGIFVHANT 180

Query: 180 DTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN- 234
                    A+ G              L +G +    P  +   ++ F S+ L  +    
Sbjct: 181 SKGDWIGVTAERGRFLATDDPNVIIFRLTNGTLIHNRPEFRAPRVLTFSSHDLPIDLPKF 240

Query: 235 --SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                   +  +  L  L       P+         R+EFH RL + +   +  L+++  
Sbjct: 241 DNFRQRGGRDLEFTLPELAKLGHEAPSAEARAGS--RAEFHFRLVEVVTMFLLPLLAVSL 298

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                       +    + L     V    + I      +P     +   +F     ++ 
Sbjct: 299 GIPPKRSTSALGVFLSIVMLVTYHKVNQYAADIGALGRVDPLIALWVPFAIFAGLVGWMY 358

Query: 353 MI 354
            +
Sbjct: 359 YV 360


>gi|229845239|ref|ZP_04465372.1| hypothetical protein CGSHi6P18H1_02459 [Haemophilus influenzae
           6P18H1]
 gi|229811834|gb|EEP47530.1| hypothetical protein CGSHi6P18H1_02459 [Haemophilus influenzae
           6P18H1]
          Length = 367

 Score =  100 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 128/357 (35%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   T   L    F   +++  +       +N ++ +++      +
Sbjct: 122 PWAIQKQVNIVKDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQK 181

Query: 183 --THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G    +    Q + L + +    + +  D  I  F  Y        +  
Sbjct: 182 QTKPSVVTAEKGELIALPNGDQVLNLKNTKRVEGTSVLPDFRITHFDEYRAYLGYQAAEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A +  LS L++ +            + ++E H R+T  L   +  LI++       
Sbjct: 242 TNDEAAELTLSQLIDLD----------SSSVKAELHWRITLILAVPLMALIAVPL---SR 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLM 353
           +  ++ +   I  +L +    F   S               ++ L       + +++
Sbjct: 289 VNPRQGRFAKILPALLLYLIYFLLQSSFKSAGAAGKLEAELLMPLVNIGFFLLAVVL 345


>gi|126728788|ref|ZP_01744603.1| permease, YjgP/YjgQ family protein [Sagittula stellata E-37]
 gi|126710718|gb|EBA09769.1| permease, YjgP/YjgQ family protein [Sagittula stellata E-37]
          Length = 364

 Score =  100 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/359 (11%), Positives = 105/359 (29%), Gaps = 13/359 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   Y  R     FL           ++ ++  +  +     S    L++    +P  L 
Sbjct: 2   TLHFYYARRFLSLFLGIFAVFALFQGLLDLIDELRQL-GDEVSFGETLQLVILKLPEGLY 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   + R++EL+     G S +T +     +A+L+   +    N I 
Sbjct: 61  EILPLVMILATVAMFIGLARSSELVATRAAGRSGLTALMAPATVALLIGAIIVAMMNPIV 120

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR------LDDDLYIKISKYNPNNTLQGIFIV 176
                    L    +   T +                   +            L  + IV
Sbjct: 121 AATSKRYADLRETYESGNTSAVSFGPEGLWLRQGGEDGQSVIRAARANPEATELYDVSIV 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ--TESAN 234
                    +      +   D    + +         ++ ++       Y L       +
Sbjct: 181 TYAPDGGPAMRIQAESAALSDGAWHLTDAKAWPLTPGLNPELGARLHVEYELPSTLTRES 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 + +   +  L                 +   ++  L + LF V   L+      
Sbjct: 241 IRDRFGRPSAVAIWDL-PQFIAGLEESGFSARRHIVWYNMELARPLFLVAMVLVGAAFTM 299

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +    R  +    +  ++ + FG+++  S+    + +N    P++  ++   +S+ L +
Sbjct: 300 QP--TRLARTGLAVLSAVLLGFGLYYVRSFAQ-IMGENGQLAPVVAAWVPPTASVLLAL 355


>gi|261345121|ref|ZP_05972765.1| membrane protein, YjgP/YjgQ family [Providencia rustigianii DSM
           4541]
 gi|282566809|gb|EFB72344.1| membrane protein, YjgP/YjgQ family [Providencia rustigianii DSM
           4541]
          Length = 358

 Score =  100 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 120/355 (33%), Gaps = 2/355 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I  S LM+   +V ++ +I+ ++++  V     +       +   +P  + +
Sbjct: 5   LDRYIGRTILNSILMALFLLVSLSGIIKFVEQLRKVGDGDYTAMSAGVFTLLTVPKDIDI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    + +   L ++   +EL+++  +G +R+ +   V+  AI L I   +    + P
Sbjct: 65  FFPMAALLGSLLGLGALASRSELVVMQASGFTRLQIAMSVMKTAIPLVIVAMLIGEWVAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                 +   A+  +  +    +  ++ +   D     S  + NN             + 
Sbjct: 125 AGDQWARNYRAEKIVGNSLVATDSGMWAKDAHDFIYIQSIKDANNIQDVSIYRFDDQRKL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTIVLKA 242
             + +A  G+ D +++  +L+  +    S   K     +    +           + L A
Sbjct: 185 KSVMFAARGTYDANKKLWVLSQVDESILSSQQKITGSQRLTYEWQTNLTPEKLGIVSLHA 244

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++  L            +L   Y+    +++   L   +  L+++            
Sbjct: 245 DSLSIRGLYQ-YITYLKESGQLASVYQLSMWQKILAPLSAAVMMLMAVSFIFGPLRTVPM 303

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I     F +          +   P  I      +  +     L++K+K
Sbjct: 304 GVRVVSGIVGGFLFYILNQGFGNWSLVYSIPPVIAAALPSVLFLGVSIFLLVKRK 358


>gi|251792100|ref|YP_003006820.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase [Aggregatibacter aphrophilus NJ8700]
 gi|247533487|gb|ACS96733.1| 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase [Aggregatibacter aphrophilus NJ8700]
          Length = 367

 Score =  100 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 127/357 (35%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + +S +     ++ I +  Q+++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILTRYLTKEVFKSQIAILFILLLIFFCQQLVRVLGSAANGQVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +     L  +   +E+ ++   G  +  L+K VL L++  +     +   + 
Sbjct: 62  LMLPLCLFIAILLTLGRLYAESEITVMRACGIGQRILVKIVLILSLFTAAVAAYNALWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++  +A+       L    F   ++  ++       +N +  +++  ++   
Sbjct: 122 PWAIHKQTEIVEEAKANPNMGALSAGQFMTANNSDFVLFIDNIQDNQINNVYVFQTQPKG 181

Query: 183 --THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G    +    Q + L + +    + I  D  I  F  Y         + 
Sbjct: 182 QSKPSVIVAEKGELKALPNGDQILNLQNSDRFEGTAILPDFRITHFDEYQAYLGHKTVAD 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A + ++  L N                ++EFH RLT  L   I  L+++       
Sbjct: 242 DADEAGEMDIMQLWNA----------NAPAMKTEFHWRLTLILAVPIMALLAVPL---SR 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLM 353
           +  ++ +   +  +L +    F   S +              + L      ++ + +
Sbjct: 289 VNPRQGRFAKVLPALLLYLIYFLLQSSLKSAGGAGKLDASLFMPLVNIAFFALAIFL 345


>gi|19704365|ref|NP_603927.1| hypothetical protein FN1030 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714617|gb|AAL95226.1| Hypothetical membrane-spanning protein [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 363

 Score = 99.7 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 118/362 (32%), Gaps = 11/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++YI +   + FLM+ +  + +  + Q  + I  ++    +   +      L+P + 
Sbjct: 3   KKMDIYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLAGGEIFDYILNLLPKMF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     ++ M  N E++ +  +G   + +++  L +A ++S+F+F   N I
Sbjct: 63  VETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLFVFFVNNSI 122

Query: 122 EPKCRSTIKQLSA-----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
             K  + I            +L  T               L  KI++         +   
Sbjct: 123 YTKSLAKINFYRRGEIDETLKLPTTKENAFFINNTEGYLYLMGKINRETGLAENIEVVKF 182

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           ++  ++  +I  A+S   D +    I ++  ++          I    +      S    
Sbjct: 183 NTEISKPKEIITAKSAKFDTEENKWIFSNVNIYNVETKETTAKIEYKSNLYKDDPSNFIK 242

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                     +  L        N   E    Y +E  KR +      I   I +      
Sbjct: 243 ASAEDPRMLTIKELKKTIKEQKNI-GEDTRIYLAELAKRYSFPFASFIVAFIGLSV--SS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
             VR  +    + I +   +G +   S     +  N    P +  ++       I +  +
Sbjct: 300 KYVRGGRTTMNLVICVVAGYGYYLV-SGAFEAMSLNGILNPFIASWVPNILYLIIGIYFM 358

Query: 355 KK 356
            +
Sbjct: 359 NR 360


>gi|78049235|ref|YP_365410.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325925500|ref|ZP_08186891.1| putative permease [Xanthomonas perforans 91-118]
 gi|78037665|emb|CAJ25410.1| putative YjgP/YjgQ family permease [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325544092|gb|EGD15484.1| putative permease [Xanthomonas perforans 91-118]
          Length = 368

 Score = 99.7 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 102/363 (28%), Gaps = 11/363 (3%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V         +   + +    +    Y +P     +
Sbjct: 9   DWYVGRVVLFTVLLTWAVLLGLDLVNAFASEAKNIGQGSYTFGHAVAYVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   I P 
Sbjct: 69  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPW 128

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI--------SKYNPNNTLQGIFIV 176
            ++    L A A+     +       +  + D ++                  L  + + 
Sbjct: 129 AQNQADTLKASARFNSDMASSRYAGLWAREGDTFLNALSGEEKLLDGGGTALDLHDVRLY 188

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
               +   +     S +   D     L           S          +  Q   A  +
Sbjct: 189 HLDPSGRMQQLTYASVAEHRDG-RWTLRQVRRDTFQERSVQRETFPELPWQSQLNPAALA 247

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + K  + +   L   +             Y  ++  R    L  +   + +I  +   
Sbjct: 248 AGLAKPRNLSAHDL-EQSIEYRRRNGLDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGS 306

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  K   + I  ++ F +   F            Y     L    +  +   + ++
Sbjct: 307 LRSGGLGKRLFLGILFALGFWLLQLFFG-RMAGALKLDYRIAYALPPMVMLGVSAWLFRR 365

Query: 357 KYT 359
           + +
Sbjct: 366 RSS 368


>gi|319776036|ref|YP_004138524.1| permease [Haemophilus influenzae F3047]
 gi|329123194|ref|ZP_08251763.1| inner membrane protein YjgP [Haemophilus aegyptius ATCC 11116]
 gi|317450627|emb|CBY86847.1| Predicted permease [Haemophilus influenzae F3047]
 gi|327471539|gb|EGF16983.1| inner membrane protein YjgP [Haemophilus aegyptius ATCC 11116]
          Length = 367

 Score = 99.7 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 128/354 (36%), Gaps = 15/354 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +P +  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPIMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   T   L    F   +++  +       +N ++ +++      +
Sbjct: 122 PWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQK 181

Query: 183 --THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G    +    Q + L + +    +    D  I  F  Y       ++  
Sbjct: 182 QTKPSVITAEKGELIALPSGDQVLNLKNTKRVEGTSALPDFRITHFDEYHAYLGYQSAEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +  +  LS L++ + ++           ++E H R+T  L   +  LI++  +    
Sbjct: 242 TNDEVAELTLSQLIDLDSSSA----------KAELHWRITLILAVPLMALIAVPLSRVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              +  KI P  +   I F +   F       +     +  L    F + ++ L
Sbjct: 292 RQGRFAKILPALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVL 345


>gi|295690098|ref|YP_003593791.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
 gi|295432001|gb|ADG11173.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
          Length = 353

 Score = 99.7 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/351 (12%), Positives = 106/351 (30%), Gaps = 8/351 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LY+LR +    L + L ++ I  ++ +L     +      +  +   +   +P +
Sbjct: 1   MK-LQLYVLRTVATRILGAALILMSILQILDLLDVTTDILDRGLGMAGVAYYAALRLPRL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P           + + R + ++ +  +G S   ++   +   I + +   +   +
Sbjct: 60  FEQVAPIAVLAGGLFAFSQLARESAVVAMRASGISGYRIVGMAMPAVIAVMLLDALCGQV 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+   T+                    F     DL I          +  + I     
Sbjct: 120 LAPRSDPTLADWWRNTTPVAERKAPSPRTFR-AGSDLVIGADASADGREITSLTIFRRNA 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                     S ++  D +   L   +  R +      S     ++       +   +  
Sbjct: 179 KGILVEKVEASKALY-DGRRWTLQSPKTTRFAGDLAQTSTAASINWPTALRPQDVQGLFG 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +    +       N  + RPE    Y + F          ++  L+S   A       
Sbjct: 238 DDSAPTAATARRALENGGSDRPESF--YATHFQSAFASPFVSLVMLLLSAPVALANFRSG 295

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           Q   +    +   + F V    + ++  + ++    P+L ++        L
Sbjct: 296 QGAVLLTAGLGAGLLFLV---ANGMLTALGESGALSPLLAVWAAPAIFGAL 343


>gi|237741965|ref|ZP_04572446.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|256845305|ref|ZP_05550763.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
 gi|229429613|gb|EEO39825.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|256718864|gb|EEU32419.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
          Length = 359

 Score = 99.7 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 55/340 (16%), Positives = 119/340 (35%), Gaps = 5/340 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  SIF+   +  
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIIFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    +K + AK         L+E  F    D+  I + K + +   + I   +  +
Sbjct: 121 IIPRSFIKLKYVGAKIAYENPVFQLKEKTFIDNLDEYSIYVDKVSSDGKAKNIIAFEKPE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
            +                 AII+ + +        K   I  F    +   +   + +  
Sbjct: 181 DKNKFPMVLTGEEAFWKDSAIIVKESQFVSFDETGKKNLIGTFDEKKVVLTAYFQDLNIK 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           +      +++ L+             +  Y+ E  ++L      V   +I    +     
Sbjct: 241 IKDVEALSITDLIKGIKKIEATE---VIKYKIEIFRKLALVFSTVPLAVIGFCLSLGHHR 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
           + ++       I +            +    + NP+    
Sbjct: 298 ISKKYSFILAMIIIFAYIIFLNIGIVMASAGKLNPFIATW 337


>gi|21244279|ref|NP_643861.1| hypothetical protein XAC3554 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109927|gb|AAM38397.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 368

 Score = 99.7 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 104/364 (28%), Gaps = 13/364 (3%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V  +      +   + +    +    Y +P     +
Sbjct: 9   DWYVGRVVLFTVLLTWAVLLGLDLVNALASEAKNIGQGSYTFGHAVAYVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   I P 
Sbjct: 69  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPW 128

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI--------SKYNPNNTLQGIFIV 176
            ++    L A A+     +       +  + D ++                  L  + + 
Sbjct: 129 AQNQADTLKASARYNSDMASSRYAGLWAREGDTFLNALSGEEKLLDGGGTALDLHDVRLY 188

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
               +   +     S +   D     L           S          +  Q   A  +
Sbjct: 189 HLDSSGRMQQLTYASVAEHRDG-RWTLRQVRRDTFQERSVQRETFPELPWQSQLNPAALA 247

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + K  + +   L   +             Y  ++  R    L  +   + +I  +   
Sbjct: 248 AGLAKPRNLSAHDL-EQSIEYRRRNGLDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGS 306

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFLLMIK 355
              R       +F+ +  + G +    +           Y     L    +  +   + +
Sbjct: 307 L--RSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFR 364

Query: 356 KKYT 359
           ++ +
Sbjct: 365 RRSS 368


>gi|332530549|ref|ZP_08406487.1| permease YjgP/YjgQ [Hylemonella gracilis ATCC 19624]
 gi|332039995|gb|EGI76383.1| permease YjgP/YjgQ [Hylemonella gracilis ATCC 19624]
          Length = 372

 Score = 99.7 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/368 (14%), Positives = 120/368 (32%), Gaps = 15/368 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS---TESLNILLKISGYLIPT 59
           +    + R I  +     L  + +      + +++ V         L   L     L P 
Sbjct: 6   TLRRLLFREILFTASFVTLAFLALFVFFDFIDQLSAVGRPDRPGFELPQALIYVVLLAPG 65

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L  + P    + T  V+T + +++E  I+  +G      +  +L    + +   F+  +
Sbjct: 66  HLYELLPITVLIGTIYVMTRLAQSSEFTILRTSGLGPWRALAMLLTAGGVFASATFVIGD 125

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD--LYIKISKYNPNNTLQGIFIVD 177
            + P      +   A+ +     +          +      I I    P+ TLQ + I +
Sbjct: 126 YLSPWSNQVAQAYRAQFRKEGASTIKGGAWLREREPYAKYGINIGALLPDGTLQRVRIYE 185

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-----SYTLQTES 232
             +          S +   + Q+  L   E    +    D+  ++        +     +
Sbjct: 186 IDNAGNLVSTLQASTARINNDQSWTLMGVERTEFNAAGPDVRRIETTQLPSYRWPTGISA 245

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              S  VL  +  N   L      +     +  E Y  +F K++   L  ++  ++++  
Sbjct: 246 EMISAAVLDPDRMNTVDLF-LYIGHLEDNAQNAERYEIQFWKKVFYPLSCLVMVMMALPF 304

Query: 293 ADKRALVRQRKKIHPIFISLSI-SFGVFWGFSYIIHKIEQNPYYI---PILYLFLFCISS 348
           A      +         +   +  F +   F YI       P+     P L   LF +++
Sbjct: 305 AYLHFRNQGISLYVFGGVMAGVTFFFLNSMFGYIGELRHWTPWIAAATPGLIFMLFSLAA 364

Query: 349 IFLLMIKK 356
              L++K+
Sbjct: 365 FAWLVLKR 372


>gi|294625210|ref|ZP_06703851.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664572|ref|ZP_06729914.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292600484|gb|EFF44580.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605656|gb|EFF48965.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 368

 Score = 99.7 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 102/363 (28%), Gaps = 11/363 (3%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V         +   + +    +    Y +P     +
Sbjct: 9   DWYVGRVVLFTVLLTWAVLLGLDLVNAFASEAKNIGQGSYTFGHAVAYVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   I P 
Sbjct: 69  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPW 128

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI--------SKYNPNNTLQGIFIV 176
            ++    L A A+     +       +  + D ++                  L  + + 
Sbjct: 129 AQNQADTLKASARYNSNMASSRYAGLWAREGDTFLNALSGEEKLLDGGGTALDLHDVRLY 188

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
               +   +     S +   D     L           S          +  Q   A  +
Sbjct: 189 HLDSSGRMQQLTYASVAEHRDG-RWTLRQVRRDTFQERSVQRETFPELPWQSQLNPAALA 247

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + K  + +   L   +             Y  ++  R    L  +   + +I  +   
Sbjct: 248 AGLAKPRNLSAHDL-EQSIEYRRRNGLDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGS 306

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  K   + I  ++ F +   F            Y     L    +  +   + ++
Sbjct: 307 LRSGGLGKRLFLGILFALGFWLLQLFFG-RMAGALKLDYRIAYALPPMVMLGVSAWLFRR 365

Query: 357 KYT 359
           + +
Sbjct: 366 RSS 368


>gi|206561015|ref|YP_002231780.1| putative permease [Burkholderia cenocepacia J2315]
 gi|198037057|emb|CAR52978.1| putative permease protein [Burkholderia cenocepacia J2315]
          Length = 364

 Score = 99.7 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 123/364 (33%), Gaps = 16/364 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFAAPIILLITFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKMIKARFQQRDEISLLAPGQFRESAANHRVFFIEKMSPDQSKVQNVFVTSTEN 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + +     + ++L DG  +  +P   +  IM+F+ Y ++  S   + +
Sbjct: 182 GKVNVVVSQTGHTETSKDGDRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSKPVTNV 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRA 297
               +      L NP  +N            +EF  R    L  +   ++ I  +     
Sbjct: 242 QTTNSTPTPDLLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIPLSYQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    + I          +  L++ +  I +    +  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHVIVAAIVAFIFWLRVRN 350

Query: 358 YTKI 361
              +
Sbjct: 351 RPLL 354


>gi|326336103|ref|ZP_08202275.1| permease YjgP/YjgQ family protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325691612|gb|EGD33579.1| permease YjgP/YjgQ family protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 359

 Score = 99.7 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/362 (11%), Positives = 112/362 (30%), Gaps = 5/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    ++    L  + I  ++   ++   ++ +      ++K     +   
Sbjct: 1   MKIIDRYILKRYFLTYSALFLMFIPIGILVDFAEKNQKMTDNHAPTEAIIKYYANFVIHF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +   TE++ + ++G S    ++P  + A +LS+F+ I    
Sbjct: 61  ANILFPIFLFLSVIWFTSKLAEKTEIVAMLSSGISYNRFLRPYFYGATILSVFVLIMGMF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P       +          +S           ++     S    NN      +     
Sbjct: 121 VVPYSSGVYNEFYGTYLSPNLYSKGSRLYNQVNKNEYIYVSSFDANNNQGSDFVLERFDG 180

Query: 181 TQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +      A +     +   +   L+     +          +  K   L  ++ +   I
Sbjct: 181 LKMTDKITASNIQWIENDSIKTYRLSYYTHRKVGEFDDIYEQVIQKDTLLNFKTTDLLPI 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A  +N   L              +  Y   +++R        I  +I +      ++
Sbjct: 241 EYAAETKNFFELNKFIAEERQKGSPNIRIYELVYYRRWAAIFNVFILTIIGVAV---SSV 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            ++      +   + I F   +         E++     +  +    + ++  + + +K 
Sbjct: 298 KKRGGMGVNLAFGVLIGFSYVFFERIFGIMAEKSGITPLMAVIIPNAMFALLAVYMIRKS 357

Query: 359 TK 360
            +
Sbjct: 358 RR 359


>gi|301017326|ref|ZP_07182090.1| conserved hypothetical protein [Escherichia coli MS 69-1]
 gi|300400299|gb|EFJ83837.1| conserved hypothetical protein [Escherichia coli MS 69-1]
          Length = 359

 Score = 99.7 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 124/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S N   + +
Sbjct: 181 DLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVMMALSLVYWYDR 357


>gi|21230126|ref|NP_636043.1| hypothetical protein XCC0651 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769883|ref|YP_244645.1| hypothetical protein XC_3583 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21111656|gb|AAM39967.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575215|gb|AAY50625.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 368

 Score = 99.7 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/371 (11%), Positives = 102/371 (27%), Gaps = 15/371 (4%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK      + Y+ R +  + L++   ++ +  V         +   + S    +    Y 
Sbjct: 1   MKLMPRVHDWYVGRAVLFTVLLTWAVLLGLDVVNAFASEAKSIGQGSYSFGHAIAFVAYT 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P     + P    +     L  +   +EL  +   G SR  +   V+    LL+  + I
Sbjct: 61  VPRRAYTLFPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVVAMALLTATMVI 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI--------SKYNPNN 168
           S   + P  +S    L   A+     +    +  +  + D ++                 
Sbjct: 121 SGETVGPWAQSQADTLKTSARYQSDMTSARYSGLWAREGDTFLNALSGEEQLLDNGGTAL 180

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           TL  + +         +         +       L           S          +  
Sbjct: 181 TLHDVRLYHLDANGQMQQLTYA-AVAEHREGRWTLRQVRRDTFQARSVQRETFPELPWQS 239

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
           Q      +  + K  + ++  L   +             Y  ++  R    L  +   L 
Sbjct: 240 QLNPKALAAGLAKPRNLSVHDL-GQSIEYRRRNGLDASDYEDQYWSRWFYPLNVLALCLA 298

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           +I  +          K   + I  ++ F +   F            Y     L    +  
Sbjct: 299 AIPFSFGSLRSGGLGKRLFLGILFALGFWLLQLFFG-RMAGALKLDYRIAYALPPMVMLG 357

Query: 349 IFLLMIKKKYT 359
           +   + +++ +
Sbjct: 358 VSAWLFRRRSS 368


>gi|260914418|ref|ZP_05920887.1| inner membrane protein YjgP [Pasteurella dagmatis ATCC 43325]
 gi|260631519|gb|EEX49701.1| inner membrane protein YjgP [Pasteurella dagmatis ATCC 43325]
          Length = 368

 Score = 99.7 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 132/357 (36%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +     ++ I +  Q+++ +   ++     +++L + G  +PT+  
Sbjct: 2   ILTRYLIKEVFKSQIAILFILLLIFFCQQLVRVLGSAANGKVPADLVLSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L++ V+ L++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVRVVMLLSLLTASIATYNVFWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   +   ++  +A+   T   L    F   + + ++       +N +  +++  +R+  
Sbjct: 122 PWAINKQSEILQEAKANPTMGALAAGQFISTNSNEFVLFIDKIVDNQINDVYLFQTRERG 181

Query: 183 T-----HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                       +  S+    Q + L + E    S    D  I  F  Y       + + 
Sbjct: 182 NLKPAVLVAERGELKSLPNGDQILTLENSERVEGSAALPDFRITHFDEYQAYLGHQDINN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A + +++ LLN                ++E + R++     +   L++++A     
Sbjct: 242 EKNEAEELSVNELLN----------STSPAAKAELNWRVSL---VLAVPLMALIAVPLSR 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLM 353
           +  ++ +   +  +L +    F   S +             ++         + LL+
Sbjct: 289 VNPRQGRFAKVLPALLLYLIYFLLQSSLKSAWGSGKLDGAFLMPFVNLVFFMLGLLL 345


>gi|332299879|ref|YP_004441800.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176942|gb|AEE12632.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 361

 Score = 99.7 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 122/359 (33%), Gaps = 7/359 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK-ISGYLIPTV 60
            + + YI      ++  S + I+ +A    + ++++ +      L  ++       +P  
Sbjct: 7   STVDRYIFTQFLATYFFSIVLILAVAIAFDVTEKLDKLLQPEVPLRAIIWDYYANFVPYY 66

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +    V + +  N+E++ I + G S   L+KP +  A +++I  F+  + 
Sbjct: 67  ANLFSPLFVFIAVIYVTSRLAENSEIIAILSCGVSFRRLLKPYMLGAAVIAILTFLLSSF 126

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     I+       +          +  ++  + ++ +S YN  + +   F +D  +
Sbjct: 127 VIPPGN-RIRIDFQNRYIKDKRITYANAIQMQVAPETFMFMSYYNDESKVGYTFSMDRFE 185

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  K     +  +        L D  +         +         +     +      
Sbjct: 186 GKDLKSRMMANSIVYDTLHNWQLQDYTITYFGERQDSLLRGNQLDTIIPITPKDFLVTEG 245

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L   +      R    + Y  E HKR+       I  L+ +      A  R
Sbjct: 246 DVEMLSTPQLYR-SIQQQRMRGAATQLYAIELHKRIAMIPASFILTLMGVSL---SARKR 301

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
           +      + + LS+SF ++  F  +           P++  +L  +  + +  +  +  
Sbjct: 302 KGGMGLALAVGLSLSF-LYILFMTVTSSFAVTGAMSPMVAAWLPNLVYLGISFVLYRLA 359


>gi|50119363|ref|YP_048530.1| putative permease [Pectobacterium atrosepticum SCRI1043]
 gi|49609889|emb|CAG73324.1| putative permease [Pectobacterium atrosepticum SCRI1043]
          Length = 371

 Score = 99.7 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 130/354 (36%), Gaps = 15/354 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N+++ + G  +P ++ 
Sbjct: 2   IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVISLLGLGVPEMVQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G  +  L+K  L LA+  ++   I+   + 
Sbjct: 62  LILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALILAMFTAVIATINVMWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +++ A+A+   + + L E  F        +        +  Q +F+   R + 
Sbjct: 122 PWSSMHQEEVLAEAKANPSMAALVEGQFQSAQGGNAVLFVGNVKGSEFQHVFLAQLRPSG 181

Query: 183 T--HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G I  +    Q + L++G  +  + + +D  I  F +Y         + 
Sbjct: 182 NARPSVVVADRGHITQNEDGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQTVTL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                    +  L + + ++           R+EFH RLT  +  +I  L+ +  +    
Sbjct: 242 NNSDVQQMGMQALWSSDAHDA----------RAEFHWRLTLIVSVLIMALMVVPLSVVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              +   + P  +   I F +         K + +P     L   ++   ++ L
Sbjct: 292 RQGRVLSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWIWLTNLMYFGIAVML 345


>gi|91762159|ref|ZP_01264124.1| Predicted permease YjgP/YjgQ family protein [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717961|gb|EAS84611.1| Predicted permease YjgP/YjgQ family protein [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 378

 Score = 99.3 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 66/376 (17%), Positives = 127/376 (33%), Gaps = 16/376 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K     + +     FL+    I  I WV+Q +  ++ V        +  K +    P ++
Sbjct: 3   KIVYKKLSKDCVNFFLLVVFTISIIIWVLQAVNYLDFVIEDGHGFLVYFKYTLLSFPKII 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +  + +L       EL+I  N G  +I  I   +  ++   +   +   +I
Sbjct: 63  SRIFPFTVFLAFSYILLKYENKNELVIFWNFGIKKINFINFFIKFSLWFVLISLLLNAVI 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +   +     + L    S L+   F  +  +L I   + N    L  IF+ +  D 
Sbjct: 123 TPFAQDKARSFIRSSNLDFFESVLKPKKFIDIIGNLTIYFDEKNKKGELINIFLNEKTDI 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-TIVL 240
              +  +A++  +++D    IL   +    + I+  IS  +F          NS+ T   
Sbjct: 183 NNSQTTFAKTAIVNIDNNKKILTLYDGKSINVINGKISEFEFSKIDYNISKFNSNTTTYQ 242

Query: 241 KANDQNLSFLLNP---------------NPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
           K  +     L+                   N  N R + LE    E + RL + L+    
Sbjct: 243 KTQETKTINLIKCSLFFNGSIINSTNIEIENIKNCRLDNLENVYKELYSRLVKPLYITFL 302

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
             IS++   K                 +  F +F   S  +            ++  +  
Sbjct: 303 ISISLLFILKSKSDHSFNINKFKIYLFAFLFIIFLESSSKLISTNLMQNIFLSIFPLILT 362

Query: 346 ISSIFLLMIKKKYTKI 361
           +      +IK K  K+
Sbjct: 363 LIIYLYFVIKLKINKV 378


>gi|300727713|ref|ZP_07061099.1| permease, YjgP/YjgQ family [Prevotella bryantii B14]
 gi|299775001|gb|EFI71607.1| permease, YjgP/YjgQ family [Prevotella bryantii B14]
          Length = 409

 Score = 99.3 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/363 (13%), Positives = 114/363 (31%), Gaps = 7/363 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  + YI++    ++  S + I+ I+ V+ I + +   +     L  I+       IP  
Sbjct: 50  KRLDWYIIKKFIGTYFFSIILIISISIVVDINENLAKFTEYHAPLKAIVFDYYANFIPYF 109

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +     +      + +  N+E++ I   G S   L++P +   +L+S+  +     
Sbjct: 110 ANLFSALFVFIAVIFFTSKLAGNSEVIAILAAGVSFKRLMRPYMISCVLISMLNYYLSAY 169

Query: 121 IEPKCR---STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
           + P         + L    +   +   +   +   +   +     +             +
Sbjct: 170 VIPHGNVVRQNFESLYKNKKKITSADNVMLQIDKGVIVYIQHYDDRLKKGFGFSLDKFEN 229

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +          Q  +I   +    +++ +      + + I+    K  TL  E  +   
Sbjct: 230 KKLVDHMTAMEIQYDTISDSKYHWRMSNWKERHLRGLREHITNGNQKDTTLYMEPTDLVY 289

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +        L        N     +  Y  E+HKR+       I  +I +      +
Sbjct: 290 SKGQQETFTSPQLKEYISKQKNRGSGNVVQYEVEYHKRIASSFASFILTIIGLSL---SS 346

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R+      + + L++SF      +       Q      +       I +I  L   K+
Sbjct: 347 RKRKGGMGMYLGVGLALSFAYIMLQTVSSTFAIQADAPPMLAAWIPNMIFAIIALFCYKR 406

Query: 358 YTK 360
             +
Sbjct: 407 APR 409


>gi|319896844|ref|YP_004135039.1| inner membrane protein [Haemophilus influenzae F3031]
 gi|317432348|emb|CBY80703.1| conserved inner membrane protein [Haemophilus influenzae F3031]
          Length = 364

 Score = 99.3 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 123/354 (34%), Gaps = 15/354 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALLMSLLTASIATYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   T   L    F    ++  +       +N +  +++      +
Sbjct: 122 PWAIQKQANIVEDAKANPTMGVLSSGQFISTSNNNVVLFIDQIKDNQIHNVYLFQITPKK 181

Query: 183 --THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G    +    Q + L + +    + +  D  I  F  Y        +  
Sbjct: 182 QIKPSVVTAEKGELIALPNGDQVLNLKNTQRVEGTSVLPDFRITHFDEYQAYLGHQETEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A +  L  L+           +     ++E H R+T  L   +  LI++  +    
Sbjct: 242 NADEAAELTLVQLI----------QQDSPAAKAELHWRITLILAVPLMALIAVPLSRVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              +  KI P  +   I F +   F       + +      L    F +  I L
Sbjct: 292 RQGRFAKILPALLLYLIYFLLQSSFKSAGGAGKLDTAIFMQLVNIGFLLLGIVL 345


>gi|171463871|ref|YP_001797984.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193409|gb|ACB44370.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 371

 Score = 99.3 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 128/355 (36%), Gaps = 15/355 (4%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           + R +  +     L +V I     +++ +   ++   +    L +        L ++   
Sbjct: 7   LRRELSFTTGGVFLVLVTIMVTTLVIRILGYAANGAVNPEDTLVLIALATLGYLAVLLTV 66

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              + T  VL    +++E+++   +G S   LI+P+L  A  L I + +    + P    
Sbjct: 67  SLFVATLIVLVRWYKDSEMIVWLASGLSVTNLIRPILQFATPLIIVIALLALFVWPWANR 126

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
               +S ++Q     S +    F        +   +    +  +   I  +         
Sbjct: 127 ESTLISQRSQQRDDVSVVSAGQFKESAKAERVFFIEELDVDKSKVKNIFVANSKNGRLSI 186

Query: 188 YAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
              S     +     ++I+L++G  +   P   D  I++F  Y+ +  S ++     +  
Sbjct: 187 AVSSTGYIQNSEGGEKSIVLHNGRRYEGQPTQPDFRILEFNEYSTKIRSKDALAPAPRDR 246

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
           ++ ++ LLN      +  P  +   R+E   R+   L  +   LI+I  A    +  +  
Sbjct: 247 EKTITELLN------DPNPTSVNPNRAELLWRIGLPLMALGLVLIAIPLAY---VNPRLG 297

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIKK 356
               +F ++ I        +   + +   +   ++ I  + L  +    +L+  +
Sbjct: 298 NYTAMFYAVLIYLIYSNLLNLTQNFVSQGRISVFVAIWPIHLLALLITTVLIRNR 352


>gi|330752041|emb|CBL80552.1| predicted permease YjgP/YjgQ [uncultured Flavobacteria bacterium]
          Length = 374

 Score = 99.3 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/374 (12%), Positives = 115/374 (30%), Gaps = 21/374 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YILR    SF ++ + I+ IA V  I ++I+   +      I+       I   
Sbjct: 1   MQKLDWYILRKFMGSFFLTMILILAIAIVFDISEKIDDFQNGATMNEIVFDYYINFIAFY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +     + T    + +  N+E++ +  +GTS    ++P    A ++ +      ++
Sbjct: 61  GNLFSALILFISTIWFTSRITSNSEVVAVLTSGTSFNRFLRPYFIGATIICLLSLTLNHL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P           K    ++    ++     L        +      +           
Sbjct: 121 LVPHTNIKRIAFEEKYITGVSRPINQKVHRQVLPGHYVYFETYSGQRQSGYQFTYEVFDS 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM-KFKSYTLQTESANSSTIV 239
            +      A    +D       L++  +     ++ ++ +  +    TL   S   +  +
Sbjct: 181 HRLASKLSADFVRLDTATGQWRLDNFRLRTLDSLNNEVILTGRRMDTTLAFTSEQIAPKL 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                 N + L            E + +Y+ E  +R +  +   +F L+++  A      
Sbjct: 241 SSIATMNSNELSRFIEQEEVTGNENIASYQMEMQRRTSYPVSSYVFVLLAVSLA---TQK 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI-----------------PILYLF 342
           R+      I I L +     +               I                   +++ 
Sbjct: 298 RRGGLGINIAIGLILCAVYVFAMQISQTFAATGLLSIDKGLGSALLWVGIQPAEFAIWIP 357

Query: 343 LFCISSIFLLMIKK 356
               + I +    K
Sbjct: 358 NLLFAGIAIWRFSK 371


>gi|285019431|ref|YP_003377142.1| permease [Xanthomonas albilineans GPE PC73]
 gi|283474649|emb|CBA17148.1| putative yjgp/yjgq family permease protein [Xanthomonas
           albilineans]
          Length = 368

 Score = 99.3 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 113/362 (31%), Gaps = 9/362 (2%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           +LY+ R +  + L++   ++ +  ++ +      +   + SL   +    Y +P     +
Sbjct: 9   DLYVGRAVLGTVLLTWAVLLGLDVIMALSNEFKDIGKGSYSLGHAVAYVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  L         +L + +  S   + P 
Sbjct: 69  FPTGAVIGVLMGLGQLAATSELTALRALGLSRRRLSLAAAATMTVLIVAMVFSGETLGPW 128

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD---- 180
            ++    + A A+     S    +  +  + D ++       +    G   ++ RD    
Sbjct: 129 AQNQADVIKANAKFNSNMSMARYSGLWAREGDTFLNAQAGEEHLQDGGGSWLELRDVRLY 188

Query: 181 ---TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                        + S +       L  G     +  S        + +  Q ++A  ++
Sbjct: 189 SLDQNGRLATLTHASSAEHHANGWTLKQGYRDTFAERSVQRETFDSQPWPSQLDAAALAS 248

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            + K  + +   L + +             Y  ++  R    +  +     +I  A    
Sbjct: 249 GLAKPRNLSAHDL-HVSIEYRQRNGLDARDYEDQYWSRWFYPINVLALCFAAIPFAFGAL 307

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 K   + I  ++ F +   F            Y     L    + ++  LM +K+
Sbjct: 308 RSGGMGKRLFLGILFALVFWLLQLFFG-RMAGALKFDYRIAYALPPLVMLTVSWLMFRKR 366

Query: 358 YT 359
            +
Sbjct: 367 SS 368


>gi|260912301|ref|ZP_05918852.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633602|gb|EEX51741.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 402

 Score = 99.3 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 117/361 (32%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI+R    +++ S L I+ IA V  + + +   +     L  I+       +P 
Sbjct: 42  LKILDWYIIRKFIGTYVFSILLIISIAIVFDVNENLAKFTQFHAPLKAIVFDYYANFVPY 101

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +   +E++ +   G S   L++P +   +L+S   F    
Sbjct: 102 FANLFSPLFVFISVIFFTSKLAGTSEIISMLAAGVSFNRLMRPYMVSCLLISGLSFYLSG 161

Query: 120 IIEPK---CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + P     +   + +   ++   +   ++  +   +   +     K             
Sbjct: 162 YVIPHGTVIKQNFESMYKNSKKNTSAENVQLQVDRGVIAYIQHYDDKAKRGYGFSLDKFE 221

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + +          Q  +I   +    +++  +     + + I+    K   +  E A+  
Sbjct: 222 NKKLVSHMTASEIQYDTISDSKYHWQVSNWRIREMKALREKITYGDRKDTLIMMEPADLV 281

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +        L              +  Y  E+HKR+       I   I +      
Sbjct: 282 FSKGQQETFTNPELSAYISKQIGRGSSNVVQYEVEYHKRIAASFASFILTTIGLSL---S 338

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +  R+      + I L++SFG +     +      N    P+L  ++  +    +     
Sbjct: 339 SRKRKGGMGLYLGIGLALSFG-YILLQTVSATFAVNADTPPMLAAWIPNLLFAVVAYFCY 397

Query: 357 K 357
           +
Sbjct: 398 R 398


>gi|254498611|ref|ZP_05111330.1| permease [Legionella drancourtii LLAP12]
 gi|254352151|gb|EET10967.1| permease [Legionella drancourtii LLAP12]
          Length = 359

 Score = 99.3 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 121/369 (32%), Gaps = 22/369 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  + +     +V I    Q++Q +N  +S T    I++K+    +PT+L 
Sbjct: 2   IIFRYLAREVFVTLIALTSILVLIFLSNQLIQYLNRAASGTIPGVIIMKLMMLELPTLLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        +   +E+ ++   G     L++    +AI +++ +        
Sbjct: 62  LLVPLGFYIAMLVAYGRLYAESEMTVLRACGYGPNQLLQHSFIMAIGVALIVAAVMIWAS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +L     +      +    F    +   +   +    +  +   +  ++ ++
Sbjct: 122 PYIYIERAKLLRTTGIQTLVQTIMPGRFHAAHNGQEVFYVQSMSRDHSKAEHVFLAKRSK 181

Query: 183 THKIYY---------AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
                                      IIL DG+ ++ +P   D  I +F  Y  +    
Sbjct: 182 EKNKMRWDVLWADKAFAETDAKTGEDYIILQDGKEYQGTPGHADYQISEFGEYKARLPHP 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
               I       + + L   N  +P           +E   RL+  +  +   L+++   
Sbjct: 242 IVK-INDDLRTFSTASLWPLNNADPGKA--------AELQWRLSVPIMVLTLTLVAVPL- 291

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLL 352
               +  +  K   +F ++ I              I          L+   F + ++ L 
Sbjct: 292 --SRINSRSGKYAKLFPAIIIYILYANLMFIGRDAIVSGKIPQWLGLWWIHFLVVALGLF 349

Query: 353 MIKKKYTKI 361
           +I +   K+
Sbjct: 350 LIWRNQVKL 358


>gi|154492560|ref|ZP_02032186.1| hypothetical protein PARMER_02194 [Parabacteroides merdae ATCC
           43184]
 gi|154087785|gb|EDN86830.1| hypothetical protein PARMER_02194 [Parabacteroides merdae ATCC
           43184]
          Length = 361

 Score = 99.3 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 124/362 (34%), Gaps = 7/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ I+ V  I ++I+   S    L  I+       IP 
Sbjct: 5   LKRIDWYIIKQFLGTYIFAIALIIAISVVFDINEKIDKFLSPDVPLKAIVFDYYMNFIPY 64

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +  +G S   L+ P    A ++++  F+   
Sbjct: 65  FANLFSPLFTFIAVIFFTSKLADNSEVIAMLASGMSFRRLMLPYAISAGIIALSTFVLNA 124

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I P      +       +         +    ++  +     +Y+  + +   F ++  
Sbjct: 125 YIIPPAN-ATRIDFQNKYIKNKKVDYVRSAQLEIEPGVIAYFDRYDARSGMGYRFSLEHF 183

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +        +           L D  +     + + I+       TL    ++    V
Sbjct: 184 EDKKMISRLTANSIKYDSLYNWTLIDYMIRDFDGMREHITEGSRMDTTLTIVPSDFLISV 243

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                   S L              ++T++ E+HKR    +   I   I        +  
Sbjct: 244 NDCETMTSSELSTYIDRQKKRGIGNIQTFQIEYHKRFAAIMAAFILTSIGASL---SSRK 300

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL-LMIKKKY 358
            +      I I L++SF  +  F+ +      N    P +  ++  I   F+ + + +K 
Sbjct: 301 IKGGMGLNIGIGLALSFS-YILFTTVTSTFAINGNLSPAMAAWIPNILYTFIAIYLYRKA 359

Query: 359 TK 360
            +
Sbjct: 360 PR 361


>gi|313887034|ref|ZP_07820734.1| permease, YjgP/YjgQ family [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923560|gb|EFR34369.1| permease, YjgP/YjgQ family [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 361

 Score = 99.3 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 121/359 (33%), Gaps = 7/359 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK-ISGYLIPTV 60
            + + YI      ++  S + I+ +A    + ++++ +      L  ++       +P  
Sbjct: 7   STVDRYIFTQFLATYFFSIVLILAVAIAFDVTEKLDKLLQPEVPLRAIIWDYYANFVPYY 66

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +    V + +  N+E++ I + G S   L+KP +  A +++I  F+  + 
Sbjct: 67  ANLFSPLFVFIAVIYVTSRLAENSEIIAILSCGVSFRRLLKPYMLGAAVIAILTFLLSSF 126

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     I+       +          +  ++  + ++ +S YN  + +   F +D  +
Sbjct: 127 VIPPGN-RIRIDFQNRYIKDKRITYANAIQMQVAPETFMFMSYYNDESKVGYTFSMDRFE 185

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  K     +  +        L D  +         +         +     +      
Sbjct: 186 GKDLKSRMMANSIVYDTLHNWQLQDYTITYFGERQDSLLRGNQLDTIIPITPKDFLVTEG 245

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                    L   +      R    + Y  E HKR+       I  L+ +      A  R
Sbjct: 246 DVEMLTTPQLYR-SIQQQRMRGAATQLYAIELHKRIAMIPASFILTLMGVSL---SARKR 301

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
           +      + + LS+SF ++  F  +           P++  +L  +  + +  +  +  
Sbjct: 302 KGGMGLALAVGLSLSF-LYILFMTVTSSFAVTGAMSPMVAAWLPNLVYLGISFVLYRLA 359


>gi|197287277|ref|YP_002153149.1| permease [Proteus mirabilis HI4320]
 gi|194684764|emb|CAR46793.1| putative permease [Proteus mirabilis HI4320]
          Length = 365

 Score = 99.3 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 130/364 (35%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R   +S +     ++ I +  ++++ +          N+++ +    IP +  
Sbjct: 2   IIIRYLARETLKSQIAILFILMLIFFSQKLVEILGAAVEGNIPTNLVVSLLWLGIPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +   +E+ +++  G  +  L++  L L++L S+    +   + 
Sbjct: 62  LILPLSLFLGLLMTYSKLYVESEITVMNACGIGKKALVQAALLLSLLTSVLAAGNVVWLI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD-- 180
           P      +Q+   A+   + + L E  F    D   +        N  Q +F+   R   
Sbjct: 122 PWSSVHQEQVLEDAKANPSLAALMEGQFKMSSDRNMVLYLGSVKGNQFQDVFLAQLRPTQ 181

Query: 181 TQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            Q   +  A  G    +    Q ++L++G  +  + + +D  I  F  Y        S+ 
Sbjct: 182 NQRPSVVVADKGYTKELPNGNQVVVLSEGTRYEGTAVLRDFRITDFTDYQAVIGHRESTI 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +   + ++ L +                 +EFH RLT     VI  L+         
Sbjct: 242 SRNRVEQKTMNELWHSTEPES----------IAEFHWRLTLIFSVVIMALM---VVPLSE 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   S +     +     P++ ++        L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLVFFLLQSSLRSS-GEKGKVDPLIAMWTVNGIYFALALLLNA 347

Query: 358 YTKI 361
           +  +
Sbjct: 348 WDTL 351


>gi|56552290|ref|YP_163129.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543864|gb|AAV90018.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 364

 Score = 99.3 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/358 (11%), Positives = 112/358 (31%), Gaps = 9/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTV 60
           +    Y+ +            ++FI   + +L +   +++        L        P +
Sbjct: 9   RQIAFYLSKLFVVRCFAVLAALIFILQTLDMLGESARILAVKGNGQAELFHYVLLRTPQL 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   +     L+++N+N+E++ +   G S   ++ P++    L+    F+  + 
Sbjct: 69  IARFLPFAVLLGVLITLSTLNQNSEIISMKAAGISAHQILMPLIASCFLIGCVSFVFNDH 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG---IFIVD 177
           +  +  + +    A        +       +  D D  I +              I + +
Sbjct: 129 LVTRATAKLDAWQAVDYGQPPPAATSGVNIWLRDGDHLIHVDNVQGYGDNVRLSGITVYN 188

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                   I  A +G           +  +V      +  ++                + 
Sbjct: 189 RSQKTLVSILSADTGQWTGHGW----HLNKVKSFDVAADTVTEKPVLDINTDLPPERFTL 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +KA++  +  L        +      +  ++    R T     ++  ++  VA    A
Sbjct: 245 ADVKADEMEVVPLYRAIKA-LDAAGRPTDELKASLIHRFTGAFAAILMPILGSVAGFGLA 303

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +      I +SL  ++ V   F+  +  +   P  +     F+  +     ++I+
Sbjct: 304 RSGRLFVRIVIGMSLGFAYFVADNFALAMGNLGTYPPLLASCSPFILFLLIGEAVLIR 361


>gi|324005416|gb|EGB74635.1| hypothetical protein HMPREF9532_04926 [Escherichia coli MS 57-2]
          Length = 359

 Score = 99.3 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 127/360 (35%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                +    Q+ + A      + +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 GASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +  +   ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNYKKWLNGKETLETLDNLAWQSAFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    Y     ++L Q +  +   L+++      ++ R
Sbjct: 241 PGNTFSVRQL-NHYIHYLQDTGQPSSEYHLALWEKLGQPILTLAMILLAVPFTF--SVPR 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 298 SPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 357


>gi|260754017|ref|YP_003226910.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258553380|gb|ACV76326.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 364

 Score = 99.3 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/358 (11%), Positives = 112/358 (31%), Gaps = 9/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTV 60
           +    Y+ +            ++FI   + +L +   +++        L        P +
Sbjct: 9   RQIAFYLSKLFVVRCFAVLAALIFILQTLDMLGESARILAVKGNGQAELFHYVLLRTPQL 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   +     L+++N+N+E++ +   G S   ++ P++    L+    F+  + 
Sbjct: 69  IARFLPFAVLLGVLITLSTLNQNSEIISMKAAGISAHQILMPLIASCFLIGCVSFVFNDH 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG---IFIVD 177
           +  +  + +    A        +       +  D D  I +              I + +
Sbjct: 129 LVTRATAKLDAWQAVDYGQPPPAATSGVNIWLRDGDHLIHVDNVQGYGDNVRLSGITVYN 188

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                   I  A +G           +  +V      +  ++                + 
Sbjct: 189 RSQKTLVSILSADTGQWTGHGW----HLNKVKSFDVAADTVTEKSVLDINTDLPPERFTL 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +KA++  +  L        +      +  ++    R T     ++  ++  VA    A
Sbjct: 245 ADVKADEMEVVPLYRAIKA-LDAAGRPTDELKASLIHRFTGAFAAILMPILGSVAGFGLA 303

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +      I +SL  ++ V   F+  +  +   P  +     F+  +     ++I+
Sbjct: 304 RSGRLFVRIVIGMSLGFAYFVADNFALAMGNLGTYPPLLASCSPFILFLLIGEAVLIR 361


>gi|270157967|ref|ZP_06186624.1| putative permease [Legionella longbeachae D-4968]
 gi|289163766|ref|YP_003453904.1| Predicted membrane protein [Legionella longbeachae NSW150]
 gi|269989992|gb|EEZ96246.1| putative permease [Legionella longbeachae D-4968]
 gi|288856939|emb|CBJ10753.1| Predicted membrane protein [Legionella longbeachae NSW150]
          Length = 359

 Score = 99.3 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 51/370 (13%), Positives = 119/370 (32%), Gaps = 24/370 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + +  + +     +V I    Q++Q +N  +S +    I++K+    +PT+L 
Sbjct: 2   IIFRYLAKEVLITLISLTSILVLIFLSNQLIQYLNRAASGSIPGVIIMKLMMLELPTLLC 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        +   +E+ ++   G     L+K  L +A ++   + I      
Sbjct: 62  LLIPLGFYIAMLLAYGRLYAESEMTVLRACGYGPNKLLKHSLIMATVVGFIVAIVMIWGS 121

Query: 123 P--KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P           S   Q  +               +++   S    +   + +F+     
Sbjct: 122 PLIYIERAKLLRSTGIQTLVQTIMPGRFHAINEGKEVFYVQSMSRDHTKAEQVFLAKRTT 181

Query: 181 TQTHKIYYAQSGSI-------DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
                 +                    IIL +G+ ++  P   D  I +F  Y  +    
Sbjct: 182 VDDKTRWDVLWADQAFAETDPKTGEDYIILQNGKEYQGVPGHADYQIAEFGEYKARLPHP 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
               I       + + L   N  +            +E   R +  +      LI++   
Sbjct: 242 VVK-ISEDFRTISTANLFPFNNTDRAKA--------AELQWRFSVPIMVFALTLIAVPL- 291

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFL 351
               +  +  K   +  ++ I              +   + P ++ + ++ L CI +  L
Sbjct: 292 --SRINPRSGKFAKLLPAIIIYIVYANLLFIARDAMVSGKMPQWLGLWWVHL-CIIAFGL 348

Query: 352 LMIKKKYTKI 361
            +I +   K+
Sbjct: 349 WLIWRNQAKL 358


>gi|326388616|ref|ZP_08210209.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206867|gb|EGD57691.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
          Length = 420

 Score = 99.3 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 134/362 (37%), Gaps = 12/362 (3%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R +    L   +    +  + ++L+  + V++    + I+ K+   L+P    +
Sbjct: 7   IDKYIARLVFVPMLSVFVIAASLLVLDKMLKLFDFVATQGGPVGIVFKMLANLMPEYASL 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +        +  ++EL ++   G S   L++    LA +L+    +  + ++P
Sbjct: 67  AIPLGLMLGILLAFRKLATSSELDVMRAVGLSYTRLLRVPYILAFVLAALNLLIVSYVQP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS-KYNPNNTLQGIFIVDSRDTQ 182
             R   ++L  + +     + ++   F  L D   +++    +    LQGIF        
Sbjct: 127 LSRYYYEELQFELRSGALGASIKVGEFNSLQDRTALRVESSRDDGRQLQGIFARVVGKDG 186

Query: 183 THKIYYAQSGSIDLDRQAI-----ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
              +  A+ G    +R+        L DG++ ++SP  ++  ++ F S+ L  +      
Sbjct: 187 QILVISAREGQFFANRENPDTVILRLTDGQIVQESPTIRNPRVLTFASHDLPIDLPKIEQ 246

Query: 238 ---IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 +  +  L  LL+   +  +  P++     +  H RL +     +  ++++  A 
Sbjct: 247 FRRRGDQDREYFLPELLHIGWSQDS-TPQMRYQSLASLHFRLVEVAMMFLLPMLAMALAV 305

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                     +    I +     V      +      +P     L+   F  +++ + M 
Sbjct: 306 PPKRSSSSLGVFVSIILVVAYHKVNEYGQDVSSLGRIDPTIA--LWGPFFIFAALIMWMY 363

Query: 355 KK 356
            +
Sbjct: 364 WR 365


>gi|71083418|ref|YP_266137.1| permease YjgP/YjgQ family protein [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062531|gb|AAZ21534.1| Predicted permease YjgP/YjgQ family protein [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 378

 Score = 99.3 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 66/376 (17%), Positives = 128/376 (34%), Gaps = 16/376 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K     + +     FL+    I  I WV+Q +  ++ V        +  K +    P ++
Sbjct: 3   KIVYKKLSKDCVNFFLLVVFTISIIIWVLQAVNYLDFVIEDGHGFLVYFKYTLLSFPKII 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +  + +L       EL+I  N G  +I  I   +  ++   +   +   +I
Sbjct: 63  SRIFPFAIFLAFSYILLKYENKNELVIFWNFGIKKINFINFFIKFSLWFVLISLLLNAVI 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +   +     + L    S L+   F  +  +L I   + N    L  IF+ +  D 
Sbjct: 123 TPFAQDKARSFIRSSNLDFFESVLKPKKFIDIIGNLTIYFDEKNKKGELINIFLNEKTDI 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI-VL 240
              +  +A++  +++D    IL   +    + I+  IS  +F          NS+TI   
Sbjct: 183 NNSQTTFAKTAIVNIDNNKKILTLYDGKSINVINGKISEFEFSKTDYNISKFNSNTITYQ 242

Query: 241 KANDQNLSFLLNP---------------NPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
           K  +     L+                   N  N R + L+    E + RL + L+    
Sbjct: 243 KTQEAKTINLIKCSLFFNGSIINSTNIEIENIKNCRLDNLKNVYKELYSRLVKPLYITFL 302

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
             IS++   K                 +  F +F   S  +            ++  +  
Sbjct: 303 ISISLLFILKSKSDHSFNINKFKIYLFAFLFIIFLESSSKLISTNLMQNIFLSIFPLILT 362

Query: 346 ISSIFLLMIKKKYTKI 361
           +      +IK K  K+
Sbjct: 363 LIIYLYFVIKLKINKV 378


>gi|258593792|emb|CBE70133.1| putative Inner membrane protein yjgQ [NC10 bacterium 'Dutch
           sediment']
          Length = 362

 Score = 98.9 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/356 (11%), Positives = 105/356 (29%), Gaps = 4/356 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + +I   + R + +    ++ +  ++ ++  ++ V   T +L          IP+ +
Sbjct: 9   STIDRHIWFRVIRGYALVMAVLLSVFSLMALVNELDSVGRGTYTLGDAFLNVILTIPSRM 68

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    + +   L  +  + EL+ +   GTS + +   V    ILL I +   +  I
Sbjct: 69  IELAPTTAVLGSIIGLGELASSHELIAMQTLGTSPLRIGASVTVTGILLMIAVIGVQEWI 128

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P           +A       +  +  + R                           + 
Sbjct: 129 APSADQLAYMRRIQAISKPEALHTRQGFWSRDGRQFIRVYQVLPGRILSNVEIYEFDDNH 188

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   + +A            +L D               +   S+        +  +VL 
Sbjct: 189 RLRLVTWAARAE-PEGSHRWVLIDVVQRMVDGGGVASKQLASLSWAGSLTPTQAELLVLP 247

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
           A   + S L +          + +        +++T  L  ++  L++I           
Sbjct: 248 AEILSRSTL-SQYIAFLKKTGQDVARLEIRLWQQMTMPLSTLMMVLVAIPFVLGPLRKAT 306

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             K       +  +F +  G  +I H          +  L    +     + + ++
Sbjct: 307 AGKRILHGSLIGAAFHL--GSHFIAHLGAILHLNAALTVLSPLAVLGGVTVWVYRR 360


>gi|325983221|ref|YP_004295623.1| permease YjgP/YjgQ family protein [Nitrosomonas sp. AL212]
 gi|325532740|gb|ADZ27461.1| permease YjgP/YjgQ family protein [Nitrosomonas sp. AL212]
          Length = 352

 Score = 98.9 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 113/349 (32%), Gaps = 2/349 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              YI   +   FL++   I+ +     +L +++ V   T  +      +  L+P     
Sbjct: 2   IYRYISGQVLIGFLIAIAVILPLFSFFDLLDQLDDVGRGTYHITDAFLYTTMLLPRRFIQ 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + PF   + T   L  +  ++EL+ +   G S   +    L + ILL + + I E  I P
Sbjct: 62  IAPFVALLGTVTALGKLAVHSELIAMRVAGLSPWRISLAPLSVGILLLLGVAILEQFIAP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           + +       A A            ++ R + ++       + N       +    +   
Sbjct: 122 QLQQKAITYRAIALEQSAELGRNLGIWTRNEKNILRIGQIISNNKAAAIEILQLDEEGFL 181

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
                AQ+  I  +     L++  V   +     ++      ++      + +T+     
Sbjct: 182 AAHVLAQTAEIVDNETWE-LSNVIVRTFANNQITVAHHTTLHWSSFVSPEDIATLTKPPE 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             +   L   +        +  ++Y     +++   L  +   L+SI             
Sbjct: 241 SLSPLELFR-HVEFLRSTGQEADSYALALWRKIGSALMTIAMLLLSIPFVFGSIRSGLSN 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           K+    +     + +    +     ++ NP  I +   F   + +   L
Sbjct: 300 KLVFASLIGIAVYLLDQIIANAGLILQLNPALIALAPGFTIIMVANVWL 348


>gi|117625285|ref|YP_854457.1| putative permease [Escherichia coli APEC O1]
 gi|115514409|gb|ABJ02484.1| putative permease [Escherichia coli APEC O1]
 gi|294491111|gb|ADE89867.1| putative permease, YjgP/YjgQ family [Escherichia coli IHE3034]
 gi|307625417|gb|ADN69721.1| hypothetical protein UM146_01460 [Escherichia coli UM146]
 gi|315288788|gb|EFU48186.1| conserved hypothetical protein [Escherichia coli MS 110-3]
 gi|323951498|gb|EGB47373.1| YjgP/YjgQ permease [Escherichia coli H252]
 gi|323957870|gb|EGB53584.1| YjgP/YjgQ permease [Escherichia coli H263]
          Length = 359

 Score = 98.9 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 128/360 (35%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A      + +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +  +   ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNYKKWLNGKETLETLDNLAWQSAFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    Y     ++L Q +  +   L+++      ++ R
Sbjct: 241 PGNTFSVRQL-NHYIHYLQDTGQPSSEYHLALWEKLGQPILTLAMILLAVPFTF--SVPR 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 298 SPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 357


>gi|300900316|ref|ZP_07118495.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|300356206|gb|EFJ72076.1| conserved hypothetical protein [Escherichia coli MS 198-1]
          Length = 315

 Score = 98.9 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 111/315 (35%), Gaps = 1/315 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +  +   ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSEYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSIS 315
                  + + + + 
Sbjct: 300 GMGSRLAVGVIVGLL 314


>gi|124514757|gb|EAY56269.1| putative permease, YjgP/YjgQ family [Leptospirillum rubarum]
          Length = 362

 Score = 98.9 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 122/365 (33%), Gaps = 13/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    YI   + + FL+  + +  I  VI  +++I    S   +L ++ +   Y    V
Sbjct: 1   MRILTRYIASELFKIFLLCFISLEAIYGVIDSVEKIKDFLSHHAALPLIGQYFFYRSIEV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    + T   L  +++N EL  I   G S +   KP L L +L+S+        
Sbjct: 61  SFRVLPMSGLLATLLTLGILSKNHELTAIRAAGISLVKATKPFLALGVLISLISIAMNYQ 120

Query: 121 IEPKCRS---TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
           + P        IK +      +   ++   N++FR  +                   ++ 
Sbjct: 121 LVPYAYQMTDYIKDVRIDQGKSGNVTFELNNVWFRHGNQDIYGARTIRDGGNELDKVVLY 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D   H  +   + ++   +      DG + R  P    + I  F+             
Sbjct: 181 HLDRTFHLSWQVDAKTLRYHQGLWSFQDGHLTRFLPDGS-LKIESFQKMDTTLTRRPVDF 239

Query: 238 IVLKANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              K    +LS+  L+             E Y       +   +   +  L++I      
Sbjct: 240 TYEKTRMTHLSYPELDRYIALLEKSHLPREKYEVTRDAMIAFPIAAFLMVLMAIPFGI-- 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-----LFCISSIFL 351
              RQ        ISL +S   +W    +   + +    +P +  +     +F +S    
Sbjct: 298 REGRQVGIAKGFGISLLLSMS-YWTIYSLGLALGKGGVLLPWISAWFANMIVFFVSISLF 356

Query: 352 LMIKK 356
           L++ +
Sbjct: 357 LLLNR 361


>gi|296445732|ref|ZP_06887685.1| permease YjgP/YjgQ family protein [Methylosinus trichosporium OB3b]
 gi|296256712|gb|EFH03786.1| permease YjgP/YjgQ family protein [Methylosinus trichosporium OB3b]
          Length = 361

 Score = 98.9 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/350 (10%), Positives = 99/350 (28%), Gaps = 5/350 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTVL 61
           +   Y+     ++ L     +  + +V+  ++ +       +   + +  ++   +P   
Sbjct: 5   TLSRYLAARFAKTILAIFATMFCLMFVVYFVELLRRAGDIPQAGADTVALMTILRVPATA 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF            + R  EL++   +G S    + P  F+A+++ +      N +
Sbjct: 65  ETILPFAVLFGAMTTFVDLTRKLELVVARASGVSVWQFLFPPAFVALVIGVVSVTLYNPV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
               +    Q+  +         ++ + + RL       I                S + 
Sbjct: 125 SAVMKQRSDQMELELFGVQGSVRVDHSKWLRLTGVDGTAILHATDYQAGGARLTEVSVNV 184

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
            + +  + +       R    +   E  R +   ++   +               T    
Sbjct: 185 YSKEGLFLERVEAARARLLAGVFVLEEARVNAPGEESRTVGSYLLATDLTPEQLVTATTP 244

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                   LL       +        Y  +F   L + L  V   L++   +      R 
Sbjct: 245 PQGAPFWSLLELGEKTADA-GLDPTGYILQFQTLLARPLLLVAMVLVAASFSL--RFFRM 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                 +   +   F ++   + +   +       P++  +   +    L
Sbjct: 302 GGIARTVSGGVVAGFVLYIV-TKLFSDLGGAGVISPLVAAWSPALVGSML 350


>gi|294670274|ref|ZP_06735167.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291308011|gb|EFE49254.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 348

 Score = 98.9 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/311 (10%), Positives = 102/311 (32%), Gaps = 5/311 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+++ +  + L +   ++ +     I+  +  V     +   +++     IP  
Sbjct: 1   MTLIARYLIKQLSITTLYAMFALLALYSFFDIVAEVGGVGEGGYTGIKMMQYVLLQIPDH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +  N+E+ +I  +G S   +I  +L   ++ +    +    
Sbjct: 61  AYQMMPLAVLIGGLIALSQLASNSEMTVIKTSGMSTKNIIAILLGFGLIFAAATALLGES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + L   A+     +       +  + +  I + +  P+ +L+GI +     
Sbjct: 121 VAPAANRYAQNLKTTAKNGKIST--GAEGLWIKEQNNIINVREMLPDQSLRGIKVFRHDQ 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +    ++        L +                  + +      +    +++
Sbjct: 179 NFKLAESWQAESAVIAADGGWKLANVRRSILDGDRVRTEKHDGEYWQAGIRGSLLDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  +L+ L      +     +  + Y+ E+ ++L   +  V+  L+++         R
Sbjct: 239 NPNQMSLTALT-AYIKHLEDNKQQADNYKIEWWRKLMYPVATVVMALVALAF--TPQSTR 295

Query: 301 QRKKIHPIFIS 311
                  +  +
Sbjct: 296 HGNMGLKLLPA 306


>gi|218261075|ref|ZP_03476041.1| hypothetical protein PRABACTJOHN_01705 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224239|gb|EEC96889.1| hypothetical protein PRABACTJOHN_01705 [Parabacteroides johnsonii
           DSM 18315]
          Length = 361

 Score = 98.9 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 124/362 (34%), Gaps = 7/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ I+ V  I ++I+   S    L  I+       IP 
Sbjct: 5   LKRIDWYIIKQFLGTYIFAIALIIAISVVFDINEKIDKFLSPDVPLKAIVFDYYMNFIPY 64

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +  +G S   L+ P    A ++++  F    
Sbjct: 65  FANLFSPLFTFIAVIFFTSKLADNSEVIAMLASGMSFRRLMLPYAISAGIIALSTFALNA 124

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I P   +T      K        Y+       ++  +     +Y+  + +   F ++  
Sbjct: 125 YIIPPANATRIDFQNKYIKNKKVDYVRS-AQLEIEPGVIAYFDRYDARSGMGYRFSLEHF 183

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +        +           L D  +     + + I+       TL    ++    V
Sbjct: 184 EDKKMISRLTANSIKYDSLYNWTLIDYMIRDFDGMREHITEGSRLDTTLTIVPSDFLISV 243

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                     L              ++T++ E+HKR    +   I   I        +  
Sbjct: 244 NDCETMTSPELSTYIDRQKKRGIGNIQTFQIEYHKRFAAIMAAFILTSIGASL---SSRK 300

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL-LMIKKKY 358
            +      I I L++SF  +  F+ +      N    P +  ++  I   F+ + + +K 
Sbjct: 301 IKGGMGLNIGIGLALSFS-YILFTTVTSTFAINGNLSPAMAAWIPNILYTFIAIYLYRKA 359

Query: 359 TK 360
            +
Sbjct: 360 PR 361


>gi|145300687|ref|YP_001143528.1| permease [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853459|gb|ABO91780.1| predicted permease [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 370

 Score = 98.9 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 114/350 (32%), Gaps = 20/350 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R   ++ L     ++ I    Q ++ I   +       ++  +    +  +  
Sbjct: 4   IVFRYLFRETLKTQLAVLFVLLLIFVSQQFIKIIGDAADGEVPTRLVSTLLLLNLSNMAL 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G S   +++  + LA+L +     +   I 
Sbjct: 64  LMLPISLFLAILFAHGRLYAESEMTVLHAVGFSHRFVMRCAMVLALLTAAVAAFNTGWIA 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV---DSR 179
           P+ +    Q+  + +     S+L+   F  LD    +   +   +       I     S 
Sbjct: 124 PQAKEREYQVIDEFKADPGISFLQAGRFMELDKGRLVAYIQELNDKASLLQKIFVLQRSH 183

Query: 180 DTQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D +   +  A  G + LD    Q + L DG  +     ++   I +F  Y+L        
Sbjct: 184 DGKPPSVVVATEGVVTLDSNGLQWLTLKDGSRYEGHFSTRQFQISEFDEYSLVIRQQEME 243

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               KA  +    LL                  +E   R++  L  ++   +        
Sbjct: 244 RSNRKAAARPTVDLL----------GTQDNGMMAELQWRISLPLSILVLTFL---VVPLA 290

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFC 345
            +  ++ +   +  ++ +    F   S     I+     + P ++L    
Sbjct: 291 RVNPRQGRYAKLLPAILLYLSYFLLLSAARSAIDSGRLPHWPGMFLVPLV 340


>gi|311103830|ref|YP_003976683.1| hypothetical protein AXYL_00610 [Achromobacter xylosoxidans A8]
 gi|310758519|gb|ADP13968.1| hypothetical protein AXYL_00610 [Achromobacter xylosoxidans A8]
          Length = 392

 Score = 98.9 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/370 (12%), Positives = 115/370 (31%), Gaps = 23/370 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   Y+ R I RS  +  + ++ +     ++  ++ V     S+  LL +    IPT 
Sbjct: 1   MRTARRYLAREIYRSCAVVLMALLGLFTFFALVDDLDNVGDK-FSMMALLYMQALAIPTR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  + +  EL+I+  +G S + L++ +  + I L I   +    
Sbjct: 60  LYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMKLLRMLWIVTIPLMIGAGLLSEY 119

Query: 121 IEPKCRSTIKQLSAKAQL----ALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           + P       + +   +         S               I I +   +  +  + + 
Sbjct: 120 VTPWAEIKSGEANLLFRGKAGGDRLNSGYWFKEPTADGGTRIINIGELKGDGQVSAVTLY 179

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------------ISIMK 222
           + +  QT          +      ++L D    R    + +              +  + 
Sbjct: 180 EFKKDQTLSALSTAPTGLFTQGD-LLLKDVTETRLDDEAAEALANARPPKHPPATVVKLP 238

Query: 223 FKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
            ++      +      VL     +++ LL+   +                 ++L      
Sbjct: 239 ERNIDTTLSAERLLARVLTPERMSIATLLD-YVDYLRNNQLQYGRQVVALWRKLAYPFTL 297

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           ++   I+          R+      +FI + +  G F      ++      +   +  L 
Sbjct: 298 LVMITIAAPIGLM--QTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLGKWPAWLTALG 355

Query: 343 LFCISSIFLL 352
               + I  L
Sbjct: 356 PNIGAMIVAL 365


>gi|325527102|gb|EGD04517.1| YjgP/YjgQ like transporter [Burkholderia sp. TJI49]
          Length = 363

 Score = 98.9 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 119/361 (32%), Gaps = 15/361 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKMIKARFQQRDEISLLAPGQFRESATNHRVFFIEKMTPDQSKVQNVFVTSTEN 181

Query: 183 THKIYYAQ---SGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                              + ++L +G  +  +P   +  IM+F+ Y ++  S     + 
Sbjct: 182 GKVNVVVSQTGHTETRDGDRFVVLENGRRYDGTPGQPNFKIMEFQRYGVKITSTPVVNVP 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRAL 298
              +   L  L NP  +N            +EF  R    L  +   ++ I  A      
Sbjct: 242 TTNSTPTLDLLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIPLAYQNPRR 290

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R    +  + I L+ S  +    + I          +  L+L +  I      +  +  
Sbjct: 291 SRTINLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLLGLHLIVAAIVGFIFWLRVRNR 350

Query: 359 T 359
            
Sbjct: 351 P 351


>gi|120434961|ref|YP_860647.1| hypothetical protein GFO_0597 [Gramella forsetii KT0803]
 gi|117577111|emb|CAL65580.1| conserved hypothetical protein, membrane [Gramella forsetii KT0803]
          Length = 341

 Score = 98.9 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/344 (12%), Positives = 114/344 (33%), Gaps = 7/344 (2%)

Query: 18  MSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVL 77
           M  +  + I   + + ++I+ +  +      +             ++ P    +      
Sbjct: 1   MMLVLFIPIGITVNLAEKIDKILENEVPFIEVAYYYLDFTIYFANLLFPIFLFLSVIWFT 60

Query: 78  TSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQ 137
           + +  NTE++   ++G S    ++P L  A ++ I   +    + P+      +   +  
Sbjct: 61  SKLAMNTEIVAFLSSGVSFYRFLRPYLIGATIVCISALVLAMYLAPQASKGFNEFKYQYL 120

Query: 138 LALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSRDTQTHKIYYAQSGSIDL 196
                +    +++ +++D+ YI  S + P +     F +      +      A +     
Sbjct: 121 KRGEQTQETSDVYRQINDNEYIYASHFQPKSKSARNFTLEHFEGNELKFKISASNLRYSE 180

Query: 197 DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPN 256
           +     L+  +          I  M+     L  E    +     A   N + L      
Sbjct: 181 EDSLYKLSRVDKRIIGKEEDSIMFMRSLDTILPFEFDELTPESYIAETLNYTELNEFIEK 240

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
                   +  Y    +KR +  +   I  +I++  A   +  R+      + + ++++F
Sbjct: 241 ERRRGSGNINRYLVVAYKRWSIPISAFILTIIAVAVA---SFKRRGGMGVNLAVGITLAF 297

Query: 317 GVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              +    F  +  +   +P         +F + ++ LL   K+
Sbjct: 298 IFIFFDKVFGTMAEQSTFSPLIAVWFPNIVFGVLAVVLLFRAKR 341


>gi|254453977|ref|ZP_05067414.1| permease, YjgP/YjgQ family [Octadecabacter antarcticus 238]
 gi|198268383|gb|EDY92653.1| permease, YjgP/YjgQ family [Octadecabacter antarcticus 238]
          Length = 362

 Score = 98.9 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/337 (11%), Positives = 97/337 (28%), Gaps = 12/337 (3%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y  R    +F  +      +  +I +++++        SL  + ++S   +PT +  
Sbjct: 1   MHRYFARRFAWTFAATFGGFFVLMLLIDLVEQLRR-YGGDASLGDMFQLSLLNLPTGIYA 59

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P    + T      + R++EL++    G S +  +   L + +++        N +  
Sbjct: 60  ILPLIMVLATVTTFLGLARSSELIVTRAAGRSALNALIAPLIVTLIIGAIAIGVLNPLVA 119

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFR-----LDDDLYIKISKYNPNNTLQGIFIVDS 178
                 +      +                     +    I+  + N + T        +
Sbjct: 120 ATLKEYEARENALRSDGPSVLAISENGLWLRQGDDNSQTVIRAGRANLDGTQLQDVTFIT 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI---SKDISIMKFKSYTLQTESANS 235
                      ++ S +L + A  L++ +    +         +            +   
Sbjct: 180 FPPTGGPTRRIEAASANLTQGAWELSEAKAWPLNSGRVAESVATTHTTLRIPSTLTADQI 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  +   +  L     +           ++  F   L Q  F +   LI   A   
Sbjct: 240 RDSFGVPSSIPIWEL-PAFIDRLEVAGFSAARHQVWFQMELAQPAFLLAMVLIG--AGFT 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
               R  +    +  ++ I F +F+  ++     E  
Sbjct: 297 MRHQRGGRTGVMVLTAILICFALFFLRNFAQILGENG 333


>gi|315634608|ref|ZP_07889892.1| inner membrane protein YjgP [Aggregatibacter segnis ATCC 33393]
 gi|315476556|gb|EFU67304.1| inner membrane protein YjgP [Aggregatibacter segnis ATCC 33393]
          Length = 364

 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 125/357 (35%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + +S +     ++ I +  Q+++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILTRYLTKEVFKSQIAILFILLLIFFCQQLVRVLGSAANGQVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +     L  +   +E+ ++   G     L+K VL L++        +   + 
Sbjct: 62  LMLPLCLFIAILLTLGRLYAESEITVMRACGVGSKILVKVVLILSLFTGALAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   +    +  +A+       L    F   ++  ++        N +  +++  ++   
Sbjct: 122 PWAINKQVAIIEEAKANPNMGALSAGQFMTANNSDFVLFIDDIQENQINNVYVFQTQPKG 181

Query: 183 --THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G    +    Q + L + +    + I  D  I  F  Y           
Sbjct: 182 QTKPSVIVAEQGELKSLPNGDQILRLQNSDRFEGTAILPDFRITHFDEYQAYLGHKAVED 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A + +L  LLN +              ++EFH RLT  L   I  L+++       
Sbjct: 242 DSNEAGEMSLMQLLNAD----------TPAMKTEFHWRLTLILAVPIMALLAVPL---SR 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLM 353
           +  ++ +   +  +L +    F   S +              + L       + +L+
Sbjct: 289 VNPRQGRFAKVLPALLLYLIYFLLQSSLKSAGGAGKLDASLFMPLVNGGFFLLAILL 345


>gi|260494012|ref|ZP_05814143.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|260198158|gb|EEW95674.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
          Length = 363

 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 114/362 (31%), Gaps = 11/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++Y+ +   + FLM+ +  + +  + Q  + I  ++        +L     L+P + 
Sbjct: 3   KKMDIYVSKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLVGGEILDYILNLLPKMF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     ++ M  N E++ +  +G   + +++  L +A ++S+ +F   N I
Sbjct: 63  VETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFINNSI 122

Query: 122 EPKCRSTIKQLSA-----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
             K  + I            +L  T               L  +I++         +   
Sbjct: 123 YTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLYLMGEINRETGVAENIEVVKF 182

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D+  ++  +I  A+S   D +    I ++  ++                      S    
Sbjct: 183 DTEISKPKEIITAKSAKFDTEENKWIFSNVNIYNVDTKETITKTEYKSKLYKDDPSNFIR 242

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                     +  L            E    Y SE  KR +      I   I +      
Sbjct: 243 ASAEDPRMLTIKEL-KKTIKEQKSIGEDTRIYLSELAKRYSFPFASFIVAFIGLSV--SS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
             VR  +    + I +   +G +   S     +  N    P +  ++       I +  +
Sbjct: 300 KYVRGGRTTMNLVICVIAGYGYYLV-SGAFEAMSLNGILNPFIASWIPNILYLIIGIYFM 358

Query: 355 KK 356
            +
Sbjct: 359 NR 360


>gi|162148704|ref|YP_001603165.1| permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787281|emb|CAP56875.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
          Length = 402

 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 127/362 (35%), Gaps = 11/362 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y++  +   FL+S   ++    + ++L  +N+++S   +L I   +   L+P  L 
Sbjct: 18  TLDRYLIGQMLPPFLLSLGVVMTALLLERLLTLLNVLASDGGTLKIFAGLLADLVPHYLG 77

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +   +V+  M++N E+  +  +G S + + +P + +  +L +  F     I+
Sbjct: 78  LALPAAICVSVFSVVRRMSQNNEIDALMASGVSLLRIARPFVVMGAVLGLVGFSLYGFIQ 137

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  R   +Q    A  A    +L+  +F    D L +   +     T      +  +   
Sbjct: 138 PYARYDFRQALYIASHAGWTPHLQARMFAAPSDTLMLTADQVQGAGTRLRRVFIRDKSAG 197

Query: 183 THKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS---- 236
             +   A SG +    D   + L+       +  + D   +     T +    +S     
Sbjct: 198 LERDITADSGRLLMTDDGTTVRLDLAHGVIVTDRNDDRPTLTTFDTTTRFFQTSSKAHAF 257

Query: 237 -TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                   +  +  L +   +             +E H RL + +      +++   A  
Sbjct: 258 RNRGNDERELTVLELRHGIRHRDLAIRRTH--LVAELHFRLARAMAIPFIPILACALA-- 313

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               RQR        ++S+          +     ++     +++          + +I 
Sbjct: 314 GMAKRQRHNTGLAIAAISLVGFDHALQLGLSLVASRSMSPWLVIWGPFAVFGFACVWLIL 373

Query: 356 KK 357
           ++
Sbjct: 374 RR 375


>gi|15893268|ref|NP_360982.1| hypothetical protein RC1345 [Rickettsia conorii str. Malish 7]
 gi|15620488|gb|AAL03883.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 378

 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 156/363 (42%), Gaps = 11/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++PT+
Sbjct: 19  MLLYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLF-DKGIKVMDFFSLIVLVLPTL 77

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G + + L  P L++A+++ +  +   + 
Sbjct: 78  LFILLPVIMVITVIYIYNNLKVERQLIILQASGVNNVQLALPALYVALIVMLLAYYISSN 137

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K      +     S +EE  F ++  D+ + I K +  N + G+ I D+R+
Sbjct: 138 ILPLSHINLKSRLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRN 197

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANS---- 235
                + +A SG++++   + I    +  R+    + +++ + F S  ++ ++ N     
Sbjct: 198 ADNPSVVFAGSGTLNIYDNSPIFELNKGIRQEYDVNGNLTQLTFDSLMIKLQNDNPLVSQ 257

Query: 236 -STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +    +AN+  +S LL P  +    +        +E H+R+   L+  +   +++    
Sbjct: 258 RTKHNKEANEYYISELLAPPHDLAITKKI---KLIAEAHQRIIWPLYNFVLPFVALAVFL 314

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +    ++   +  +F +L++       F  + +   +N  +I   Y  L    +I L + 
Sbjct: 315 RYPYSKKTTFMPVLFSALTVLLVTSIHF-ILQNFASKNLDFIFACYFNLVIALTIGLYLF 373

Query: 355 KKK 357
            +K
Sbjct: 374 VRK 376


>gi|78067267|ref|YP_370036.1| YjgP/YjgQ like transporter [Burkholderia sp. 383]
 gi|77968012|gb|ABB09392.1| YjgP/YjgQ like transporter [Burkholderia sp. 383]
          Length = 363

 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 120/361 (33%), Gaps = 15/361 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKMIKARFQQRDEISLLAPGQFRESATNHRVFFIEKMTPDQSKVQNVFVTSTEN 181

Query: 183 THKIYYAQ---SGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                              + ++L DG  +  +P   +  IM+F+ Y ++  S   + + 
Sbjct: 182 GKVNVVVSQTGHTETRDGSRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSTPVTNVP 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRAL 298
              +      L NP  +N            +EF  R    L  +   ++ I  +      
Sbjct: 242 TTNSTPTPDLLRNPTNDNL-----------AEFAWRAGLPLIAINLMVLGIPLSYQNPRR 290

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R    +  + I L+ S  +    S I          +  L+L +  I +    +  +  
Sbjct: 291 SRTINLVMAVLIYLTYSNLLNVVQSQIEQGKMSFGVGLVGLHLVVAVIVAFIFWLRVRNR 350

Query: 359 T 359
            
Sbjct: 351 P 351


>gi|264678997|ref|YP_003278904.1| permease YjgP/YjgQ [Comamonas testosteroni CNB-2]
 gi|262209510|gb|ACY33608.1| permease YjgP/YjgQ [Comamonas testosteroni CNB-2]
          Length = 367

 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/369 (12%), Positives = 122/369 (33%), Gaps = 14/369 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS--TESLNILLKISGYLIP 58
           MK     I R + ++ L   L  + + +   ++  +  V S     +    L      IP
Sbjct: 1   MKVLRNLIYREVIQAVLYVSLAFLALFFFFDLVDEMRWVGSGNAGYTATRALLFVALSIP 60

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             L  + P    +    V+    +++E  I+  +G      ++ +L L +   +   +  
Sbjct: 61  GHLYELMPIAVLIGAIFVMAKFAQSSEFTIMRTSGMGPWLALRTLLILGMSFVLLTVLVG 120

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI--SKYNPNNTLQGIFIV 176
           + I P   +  ++L   ++  ++       L  +  D        +  +P + +      
Sbjct: 121 DYIAPAADNFSQKLRVVSKGQISRGATGAWLKEKQGDHSVAINVGAVKSPGDFVNVRIFE 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                +      AQS  +D DR+   L   +  + +       +      ++   +  ++
Sbjct: 181 FDSKGRIAAQINAQSAQVDEDREQWTLQGVQGSKVAQDGDVTKLSPISEASMNWPTKVTA 240

Query: 237 TIVLKA---NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            +V  A    D+  +  L     +     +  + Y  EF +++   L  ++  ++++  A
Sbjct: 241 AMVSGALLKPDRMTTIALFQFIRHLQDNGQAAQKYEIEFWRKVFYPLSCLVMVVLALPFA 300

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI-----SS 348
                 R       +F  +      F   +   +      ++  +       +      S
Sbjct: 301 YL--HFRSGGITAYVFGGVMAGISFFLLNNVFGYIGTLQSWWPWLAAAAPGLLYTALSLS 358

Query: 349 IFLLMIKKK 357
            F  ++ ++
Sbjct: 359 AFGWLVLRR 367


>gi|254467255|ref|ZP_05080666.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
 gi|206688163|gb|EDZ48645.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
          Length = 367

 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 106/343 (30%), Gaps = 16/343 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LY  R   + FL+ C  ++ +  +I + ++I     +   L  L+ +S   IP  
Sbjct: 1   MK-LDLYYARRFLQWFLVICAVLMTLVILIDLNEQIRRFEGAGLGLPQLVGLSLLNIPAA 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    + T  +   + R++EL++    G S I  +   +  A  + +      N 
Sbjct: 60  LSEFLPLIMILTTIVLFVGLARSSELVVTRAIGRSGIRALAAPVLAAAGIGVLAVTMLNP 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEEN---LFFRLDDDLYIKISKYNPNNTLQGIFIV- 176
           I     +  + L+         +           +        I     +     I +  
Sbjct: 120 IAAATANRYQDLAETYHNGGPSALSLSGEGLWLRQGGARGQSVIHAKGYSGDAADITLHD 179

Query: 177 -----DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQT 230
                 S      +   A+S  +  D    IL + +    +   + +          L T
Sbjct: 180 VSIHAYSTAGGPVRRIIAESARL--DGSNWILTNAKSWPLTAGINPEAGAASHDELQLPT 237

Query: 231 ESANSSTIVLKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                           +S + L       +      + Y   +   L + LF +   L+ 
Sbjct: 238 TLTTDRIRDTLGTASGISIYDLPATIRELSAAGFTTKRYEVRYQAELARPLFLIAMVLVG 297

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
                     R       + +++ + FG+++  ++     E  
Sbjct: 298 ASF--TMRHARFGGTGLAVLMAVLLGFGLYFIRNFAQILGENG 338


>gi|317402625|gb|EFV83184.1| membrane protein [Achromobacter xylosoxidans C54]
          Length = 392

 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/372 (12%), Positives = 113/372 (30%), Gaps = 26/372 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   Y+ R I RS  +  + ++ +     ++  ++ V     S+  LL +    IPT 
Sbjct: 1   MRTARRYLAREIYRSCAVVLMALLGLFTFFALVDDLDNVGDK-FSMMALLYMQALAIPTR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  + +  EL+I+  +G S + L++ +  + I L I   +    
Sbjct: 60  LYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLRMLWIVTIPLMIGAALLSEY 119

Query: 121 IEPKCRSTIKQLSAKAQLAL-----TFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           + P       + +   +           Y  +         +    +             
Sbjct: 120 VTPWAEMKSGEANLMFRGKAGGDRLNSGYWFKEPTANGGTRIINIAALQGDGQVTGVTLY 179

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------------ISIM 221
              +D     +  A +G         +L D    R    + +              +  +
Sbjct: 180 EFKKDLTLSVLSTAPNGLFAHGDL--VLKDVSETRLDDNAAETLADARPPKNPPAVVVKV 237

Query: 222 KFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
             ++      +      VL     ++  LL+   +                 ++L     
Sbjct: 238 PERTVDTTLSAERLLARVLTPERMSIVTLLD-YVDYLRNNQLQYGRQVVALWRKLAYPFT 296

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
            ++   I+          R+      +FI + +  G F   + +   +     + P L  
Sbjct: 297 LLVMITIAAPIGLM--QTRRGGVGAKVFIGILLGVGFF-MLNQLALNVGMLGKWPPWLTA 353

Query: 342 FLFCISSIFLLM 353
               I ++ L +
Sbjct: 354 LGPNIGAMALAL 365


>gi|228471152|ref|ZP_04055971.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
 gi|228307092|gb|EEK16166.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
          Length = 361

 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 122/359 (33%), Gaps = 7/359 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK-ISGYLIPTV 60
            + + YI      ++  S + I+ +A    + ++++ +      L  ++       +P  
Sbjct: 7   STVDRYIFIQFLATYFFSIVLILAVAIAFDVTEKLDRLLQPDVPLRAIIWDYYANFVPYY 66

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +    V + +  N+E++ I + G S   L+KP +  A +++I  F+  + 
Sbjct: 67  ANLFSPLFVFIAVIYVTSRLAENSEIIAILSCGMSFRRLLKPYMLGAAVIAILTFLLSSF 126

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++       +          +  ++  + ++ +S YN  + +   F +D  +
Sbjct: 127 VIPPGN-RVRIDFQNRYIKDKRITYANAIQMQVAPETFMFMSYYNDESKVGYTFSMDRFE 185

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  K     +  I        L D  +         +         +     +      
Sbjct: 186 GKDLKSRVMANSIIYDTLYNWQLQDYTITYFGERQDTLFRGNQLDTIIPITPRDFLVTEG 245

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                    L + +      R    + Y  E HKR+       I  L+ +      A  R
Sbjct: 246 DVEMLTTPELYH-SIQQQRMRGAATQLYAIELHKRIAMIPASFILTLMGVSL---SARKR 301

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
           +      + + LS+SF ++  F  +           P++  +L  +  + +  +  +  
Sbjct: 302 KGGMGLALAVGLSLSF-IYILFMTVTASFAVTGAMAPVVAAWLPNLVYLGISFVLYRLA 359


>gi|114776388|ref|ZP_01451433.1| hypothetical protein SPV1_01672 [Mariprofundus ferrooxydans PV-1]
 gi|114553218|gb|EAU55616.1| hypothetical protein SPV1_01672 [Mariprofundus ferrooxydans PV-1]
          Length = 352

 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 123/358 (34%), Gaps = 12/358 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     +I        L++   ++ I  +I+   +   +        ++++     IP +
Sbjct: 1   MPVVFRWIFSGCLSRSLVTMSALLAIFVIIESFDKARYL-GHGLDGRLMVEYMLLKIPFM 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +  +  L  ++RN E++ +   G     ++ P+  +A+L ++  FI    
Sbjct: 60  LSEFMPVIMLIGASLYLIELSRNQEVVALRAAGLGINKVLLPLSSVALLAALASFIIGEW 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + + Q+          S                +  +  P    Q   ++    
Sbjct: 120 VTPVTNTRLDQIEQVHIQHKKSSQPGVQWLKDG-----HRFFRLTPLTNHQFALLMLKTA 174

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +    S      +    L+D  V   S   + + + K K+  +++     +  + 
Sbjct: 175 PDGAWLQRIDSPRAHYSQGVWSLSDARVSTPSSD-QVMHVEKLKNMEVKSAIGPETADLP 233

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    + S L +   NN  +      TY    H++ +  L  ++  +++          R
Sbjct: 234 KPGHMDFSELYH-YINNLKHAGLGAGTYVYALHRKFSAPLACLLMVIMAAALCLHTG-NR 291

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMIK 355
             +    + +S+S+    +   +        N   P +   L   +F  +++FLL+ +
Sbjct: 292 NSRASWGLMLSISLGLVFYVIGNAGYLLAASNRIPPAFAAWLPSLVFGGTAVFLLLKR 349


>gi|329894348|ref|ZP_08270218.1| putative permease [gamma proteobacterium IMCC3088]
 gi|328923144|gb|EGG30467.1| putative permease [gamma proteobacterium IMCC3088]
          Length = 372

 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/368 (13%), Positives = 131/368 (35%), Gaps = 24/368 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R I  +     L +  + +  Q ++R+  V+    +   L  I  + IP+ L 
Sbjct: 2   LIVRYLTRDILVNTSAVSLVVFLVVFSSQFVRRLADVAEGDLAAGFLASIMFFSIPSYLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +     L  +  ++E++++  +G     L++ VL    +++I        + 
Sbjct: 62  LILPLGFFVGLMLALGRLYTDSEMVVLSASGIGPWHLLRWVLVSGAVVAILSAGLSLGLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  ++ +  L  +A      +      F R         ++   ++      +  +    
Sbjct: 122 PWTKTKVLNLVTEASNEKGLAAFVPGRFQRRSGGFDTFYAESVESDQQGLKGLFVAEQGM 181

Query: 183 TH------KIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           +        I YA+ G +    +   + + L +G  ++  P   +  + +F+    +   
Sbjct: 182 SSAGEPLVTITYAERGRVVSSQEHGGRYLELLNGRRYQGQPGQLEYRVTEFEVLGERLPD 241

Query: 233 ANS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           A+S  S       D   + +L  + N+ +          +  H RL+  L P     +++
Sbjct: 242 ADSAGSAFGDDLYDALPTQMLFLDNNSAST---------ATLHWRLSLVLMPFNLAFLAL 292

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             A      R+R +   +  ++ +      G + +     +      +  L         
Sbjct: 293 GLA---RTDRRRGRYTMLLPAIVLYLVYLVGLASLRGAAAEGASVGSLWGLHAVIAGIGC 349

Query: 351 LLMIKKKY 358
           ++++  ++
Sbjct: 350 VVLLWPQW 357


>gi|290473524|ref|YP_003466394.1| putative transmembrane protein, transport [Xenorhabdus bovienii
           SS-2004]
 gi|289172827|emb|CBJ79598.1| putative transmembrane protein, transport [Xenorhabdus bovienii
           SS-2004]
          Length = 366

 Score = 98.5 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 129/356 (36%), Gaps = 19/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +      +   N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVEVLGAAVEGSVPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +   +E+ ++   G  +  L+K  L LA+  S+    +     
Sbjct: 62  LILPLSLFLGVLMTFSKLYTESEITVMHACGLGKGVLVKSALILALFTSMLAAANVLWFT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q+ A A+   + + + E  F    D   +        N  + +F+   R   
Sbjct: 122 PWSSKYQEQVLADAKANPSLAAIMEGQFKPSRDGNMVLYIGDVKGNNFENVFLAQLRPVN 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G +       Q  +L+ G  +  + + +D  I  FK+Y        +  
Sbjct: 182 NQRPSVVIADGGHMEERPNGNQVAVLHQGVRYEGTALMRDFRITDFKNYQAVIGHKAADI 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K   +  S L +    +           R+E H RLT  +  ++  L+        A
Sbjct: 242 DSDKVEQKTFSQLWHKGDEDS----------RAELHWRLTLIVSVLVMALL---VVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +  ++ ++  +  ++ +    F   S +     +     P  +++L   +   L +
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSNGGR-GKLDPAFWMWLVNGAYFALAL 343


>gi|281424311|ref|ZP_06255224.1| putative membrane protein [Prevotella oris F0302]
 gi|281401580|gb|EFB32411.1| putative membrane protein [Prevotella oris F0302]
          Length = 432

 Score = 98.5 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 119/362 (32%), Gaps = 8/362 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  + YI++    +++ S   I+ I+ V+ I + +   S     L  I+       IP  
Sbjct: 73  KRLDWYIIKKFIGTYIYSIALIISISIVVDINENLAKFSEYHAPLKAIVFDYYMNFIPYF 132

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ +   G S   L++P +   IL+S   F     
Sbjct: 133 ANLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMITCILISAVSFYLSGY 192

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   +  +     +  +  +       +       N      G  +   +D
Sbjct: 193 VIPHSNVIRQDFESLYKNNKKNTAADNVMLQVGSGVIAYIQQYDNNTKRGYGFSLDKFQD 252

Query: 181 TQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +      A       I   +      + ++ + +   + I   + K  T+  E  +   
Sbjct: 253 KKLVSHMTATEIQYDTISDSKYHWTALNYKIRKFNGYREQIENGEKKDTTIMMEPTDLVY 312

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +        L +      +     +  Y+ E+HKR+       I  +I +      A
Sbjct: 313 SKGQQETFTNPELSDYISKQIDRGSSNVVQYQVEYHKRIAASFASFILTIIGLSL---SA 369

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R+      + I L++SFG +     +      N    P++  ++  +    +     +
Sbjct: 370 KKRKGGMGLYLGIGLALSFG-YIMLQTVSSTFAINANLPPVIAAWIPNLIFAVVAYFCYR 428

Query: 358 YT 359
             
Sbjct: 429 QA 430


>gi|254447192|ref|ZP_05060659.1| permease YjgP/YjgQ family protein [gamma proteobacterium HTCC5015]
 gi|198263331|gb|EDY87609.1| permease YjgP/YjgQ family protein [gamma proteobacterium HTCC5015]
          Length = 353

 Score = 98.5 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/363 (11%), Positives = 131/363 (36%), Gaps = 18/363 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y++R + +S     L ++ +     ++Q ++  +    +   +  +    +   
Sbjct: 1   MHITDRYLIREVAKSSAAVLLVLLVLMVGNTLVQLLSDAADGNMAPQYIWPLLVITLANY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +       +        + ++ E+  +   G       +P+  +AI +S+   +    
Sbjct: 61  LVLFMGLSLYLGGMLAFGRLYKDAEMAAMVACGMGPWDFFRPLFKVAIPISLAGLVLSVF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P       + ++ A+     ++L E  F  L + ++  + + +     Q         
Sbjct: 121 ILPWMAGLQAKFTSDAEKPSVETHLREGEFNELGNGIFF-VEEQSGGALSQVFVYSRDPS 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            ++ ++  +           + L  G +++ +   + I  ++++ Y +  ES N+     
Sbjct: 180 GESIQVAESGRVEDAPSGYELTLQQGRLYQINTE-QRIRDIRYQEYEVMVESPNAVVDEQ 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                  S L+  +               +E+  RL+  +  +   L++++A        
Sbjct: 239 VLAATQTSDLMRSDNPLE----------VAEWQWRLSVPIGCL---LLAVLAFPLSYTSP 285

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIKK-K 357
           ++     +  ++ +        S     +  ++ P ++ + +  L  ++ I  L++++  
Sbjct: 286 RKGAFSKLGYAILVYILYSNFLSLGRSLVQNQEVPLWLGMWWAHLPVLALIIGLLLRRYG 345

Query: 358 YTK 360
           + +
Sbjct: 346 WPR 348


>gi|241761652|ref|ZP_04759739.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373960|gb|EER63493.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 364

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/358 (11%), Positives = 112/358 (31%), Gaps = 9/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTV 60
           +    Y+ +            ++FI   + +L +   +++        L        P +
Sbjct: 9   RQIAFYLSKLFVVRCFAVLAALIFILQTLDMLGESARILAVKGNGQAELFHYVLLRTPQL 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   +     L+++N+N+E++ +   G S   ++ P++    L+    F+  + 
Sbjct: 69  IARFLPFAVLLGVLITLSTLNQNSEIISMKAAGISAHQILMPLIASCFLIGCVSFVFNDR 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG---IFIVD 177
           +  +  + +    A        +       +  D D  I +              I + +
Sbjct: 129 LVTRATAKLDAWQAVDYGQPPPAATSGVNIWLRDGDHLIHVDNVQGYGDNVRLSGITVYN 188

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                   I  A +G           +  +V      +  ++                + 
Sbjct: 189 RSQKTLVSILSADTGQWTGHGW----HLNKVKSFDVAADTVTEKPVLDINTDLPPERFTL 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +KA++  +  L        +      +  ++    R T     ++  ++  VA    A
Sbjct: 245 ADVKADEMEVVPLYRAIKA-LDAAGRPTDELKASLIHRFTGAFAAILMPILGSVAGFGLA 303

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +      I +SL  ++ V   F+  +  +   P  +     F+  +     ++I+
Sbjct: 304 RSGRLFVRIVIGMSLGFAYFVADNFALTMGNLGTYPPLLASCSPFILFLLIGEAVLIR 361


>gi|158337167|ref|YP_001518342.1| YjgP/YjgQ family membrane protein [Acaryochloris marina MBIC11017]
 gi|158307408|gb|ABW29025.1| membrane protein, YjgP/YjgQ family, putative [Acaryochloris marina
           MBIC11017]
          Length = 383

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 117/365 (32%), Gaps = 7/365 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + +ILR     ++ +      I   +  +   +  ++  T S    L++    +P  
Sbjct: 18  SRLDRFILRAFWMPWVFAFGAFTTISFSIGALFDTLRRLTEGTLSSVDALQVLVLQLPRF 77

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +      + + R  EL+ +   GTS   +I+P L  ++++++        
Sbjct: 78  MVLALPMSMLLAPLLTYSQLARKNELIALKACGTSVYRVIRPALCFSLIVAVSTLTLNEW 137

Query: 121 IEPKCR---STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
           I P        ++     +Q+         +  +       +  ++      L  + I+ 
Sbjct: 138 IVPPATAAVHRLQAQQTVSQITAIPRQNIVHQTYHHQRLTQLFHARAFDGEALHQLTILQ 197

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISI-MKFKSYTL-QTESANS 235
            +D   H I+ A+    D   Q  IL+ G  +   P+S      + FK +   Q      
Sbjct: 198 FQDRHLHHIWLAKQAIWDSTHQQWILSQGTRYTIDPVSGLYQQVVPFKRHPFHQVSPQEL 257

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           + +  +    + +  L       +     L+  +  +H  +      V F L+      +
Sbjct: 258 AEVAHQPISLHETQALIQQIKQ-SGNLPTLQRLQVRWHALMAFPWIGVGFTLMGSSLGCQ 316

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               +         + +   +   +    +      +      L + +       LL   
Sbjct: 317 STSKQGSLGFGLSSLLIFGYYTFSFICQTLGDAGIWSASIAGWLPIVVLLTIGSALLHHN 376

Query: 356 KKYTK 360
             Y+K
Sbjct: 377 NTYSK 381


>gi|226943299|ref|YP_002798372.1| YjgP/YjgQ family permease [Azotobacter vinelandii DJ]
 gi|226718226|gb|ACO77397.1| permease YjgP/YjgQ family [Azotobacter vinelandii DJ]
          Length = 353

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 103/355 (29%), Gaps = 4/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  S L     +V +A +   +  +  V      L          +P  
Sbjct: 1   MGKLDRYIGASVSLSILAVLGVLVGLALLFSFVDELGDV-QGDYDLAAAAWYVFLTVPQR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L S+  ++EL +I  +G S   ++  V+   ++L +   +    
Sbjct: 60  TYEMLPMGALIGCLIGLGSLASSSELTVIRASGISLGRIVWAVMKPMLVLMVLGGLLGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ        +  L+ R  ++     +                  
Sbjct: 120 LAPWAENKAEAHRSLAQGGGEAQTAKHGLWHRQGNEFVHINAVQPGGVLYGVTRYRFDDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+            L D    R    S +++    + + +        T+V+
Sbjct: 180 RHMLWSSFARKAEFRGGNWQ--LEDVTTTRFLERSTEVAKAATEQWDILLSPQLLGTVVM 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +++ L     +    +      Y   F  ++ Q L      L++I          
Sbjct: 238 DPEALSVTGL-WHYIHYLAEQELNNARYWLAFWGKVLQPLVTAALVLMAISFIFGPLRSV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +     +     F +F        ++      + +L     C      L+ +
Sbjct: 297 TLGQRLFTGVLAGFVFRMFQDLLGPSSQVFGFSPLLAVLLPAGLCALLGVYLLRR 351


>gi|256027206|ref|ZP_05441040.1| hypothetical protein PrD11_04301 [Fusobacterium sp. D11]
 gi|289765183|ref|ZP_06524561.1| conserved hypothetical protein [Fusobacterium sp. D11]
 gi|289716738|gb|EFD80750.1| conserved hypothetical protein [Fusobacterium sp. D11]
          Length = 363

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 114/362 (31%), Gaps = 11/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++Y+ +   + FLM+ +  + +  + Q  + I  ++        +L     L+P + 
Sbjct: 3   KKMDIYVSKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLVGGEILDYILNLLPKMF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     ++ M  N E++ +  +G   + +++  L +A ++S+ +F   N I
Sbjct: 63  VETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFINNSI 122

Query: 122 EPKCRSTIKQLSA-----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
             K  + I            +L  T               L  +I++         +   
Sbjct: 123 YTKSLAKINFYRRGEVDESLKLPTTKENAFFINNADGYLYLMGEINRETGVAENIEVVKF 182

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           ++  ++  +I  A+S   D +    I ++  ++                      S    
Sbjct: 183 ETEISKPKEIITAKSAKFDTEENKWIFSNVNIYNVDTKETITKTEYKSKLYKDDPSNFIR 242

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                     +  L            E    Y SE  KR +      I   I +      
Sbjct: 243 ASAEDPRMLTIKEL-KKTIKEQKSIGEDTRIYLSELAKRYSFPFASFIVAFIGLSV--SS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
             VR  +    + I +   +G +   S     +  N    P +  ++       I +  +
Sbjct: 300 KYVRGGRTTMNLVICVIAGYGYYLV-SGAFEAMSLNGILNPFIASWIPNILYLIIGIYFM 358

Query: 355 KK 356
            +
Sbjct: 359 NR 360


>gi|85716330|ref|ZP_01047303.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
 gi|85696846|gb|EAQ34731.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
          Length = 365

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 106/360 (29%), Gaps = 15/360 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y       + L   + I  +  ++  ++ +   S  ++ S  ++ + S + +P +
Sbjct: 6   NTLGRYFAGRFLVAALGVFVSIFLLLVLVDYIEMVRRTSGLASASALVVAETSLFRVPQL 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  +TPFC  +       +++R  EL++    G S    I P L  AI+L        N 
Sbjct: 66  LEKLTPFCVLIGAMTCYLALSRQLELVVARAAGVSAWQFISPALACAIVLGALATTVYNP 125

Query: 121 IEPKCRSTIKQLSAKAQLA------LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           +    R   K++ A+             S    N        +            L G+ 
Sbjct: 126 LSANLRELSKRMEAELFGGVSGGGLQDASGFWINQVTDDGQAIINAARSEQQGVRLTGLT 185

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +         +       +   D +   L  G   R +  +  +    F   +     A 
Sbjct: 186 VFRFNPHSRFEERIEAREAALEDGRW--LFKGV-RRFTLDNPPVEQETFV-LSTSLTPAQ 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                      +   L      +          YR ++HK + Q        +++   + 
Sbjct: 242 VQNSFSTPETVSFWQL-PGYIKSSESSGFATAGYRLQYHKLIAQPFLLAAMVMLAASVSL 300

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                R       +   +   F ++   S +   + +     PI   +L          +
Sbjct: 301 --RFFRFGGVQKMVLSGVGSGFLLY-VLSKVTEDLSKAELMNPIAAAWLPVCVGGLTGFL 357


>gi|226940338|ref|YP_002795412.1| permease YjgP/YjgQ [Laribacter hongkongensis HLHK9]
 gi|226715265|gb|ACO74403.1| permease YjgP/YjgQ [Laribacter hongkongensis HLHK9]
          Length = 363

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/362 (12%), Positives = 119/362 (32%), Gaps = 18/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F   ++R +          ++ I  V Q+++  +  +S     + ++ +  +       
Sbjct: 2   IFYRSVIRELTAVAFAVFSVLLAIMVVTQVVKLFDKAASGALPADAIVALIAFSTLGYFG 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +    VLT + R+ E+ +   +G S    I+PVL  A+ L++ +      + 
Sbjct: 62  TLLSITLFISVIVVLTRIWRDHEMAVWLTSGLSPNRWIRPVLAFAVPLTLLIATVSLFLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       + +   +     S +   +F    D   +   +           +       
Sbjct: 122 PWAARKGSEYTDILRQQDEISAVAPGVFKESRDGSKVYFVENYSGEAGSATNLFVRSIEN 181

Query: 183 THKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                      I        + + L DG  +     + D  +++F+ Y ++      +T+
Sbjct: 182 GKTSLVFAREGIVRTEPNGERYLYLTDGRRYEGEAGAADWKVVEFRKYKVKINQNIRTTV 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +      S L   N  +           R+E   R++  +  +I     ++A      
Sbjct: 242 DTRTKSVPSSMLWLANTPDA----------RAELAWRVSLPIASLILA---LLAIPLSYY 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLMIKKK 357
             +  +   + I++ +    +     +   I +       +++L L  +    LLM+ ++
Sbjct: 289 NPRSGQTFNLLIAIFVYQLYYNLMGVVQSWISKGELSVWSMVWLHLTMLGLFVLLMVMRR 348

Query: 358 YT 359
             
Sbjct: 349 KP 350


>gi|222099907|ref|YP_002534475.1| Permease YjgP/YjgQ family protein [Thermotoga neapolitana DSM 4359]
 gi|221572297|gb|ACM23109.1| Permease YjgP/YjgQ family protein [Thermotoga neapolitana DSM 4359]
          Length = 1048

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 122/342 (35%), Gaps = 4/342 (1%)

Query: 14  RSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMET 73
             FL+     +    +  + Q  +L+      +  L  +  Y +P  + M  P    +  
Sbjct: 1   MPFLIGLGGFIIFVSIEILYQLSDLIVRHRVGIGKLFLLLYYYLPYFVAMGVPVGVLLSI 60

Query: 74  TNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS 133
               + ++ + EL+ I   G S+  LI P LFL++LLS+ +F   + + P  +S  ++  
Sbjct: 61  FWTFSKLSEDRELMAIQVHGISQKNLIVPFLFLSVLLSVIVFFLNDQVVPVYQSRAEEAM 120

Query: 134 AKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGS 193
           +K  L     ++ EN+  ++ +D Y  + KY+         ++    ++   +    +  
Sbjct: 121 SKYVLKKPEVFVVENVISKIGEDQYFYVEKYDEKTNTLWNVVIFKYGSEEKIV---TAKR 177

Query: 194 IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-TIVLKANDQNLSFLLN 252
           +    +   L DG  +           + F    L       +   V K   +     L 
Sbjct: 178 VQKREERWYLFDGRYYTVDKDGFLKLDVHFSEMELDITEDIENLLRVGKTPREMTGKELK 237

Query: 253 PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISL 312
                          +  E   R    L P++  L+ +  +    L  +   +   F+ +
Sbjct: 238 EKIEFFRKVGIKPSPWIVELQSRYANSLTPIVIVLVGVPLSLLFQLRSKSWGVIFTFVLV 297

Query: 313 SISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            +  G     S +  +   +P + P +   +F +    L ++
Sbjct: 298 VLYQGSGAWLSAMGKENLLDPGFAPWIPNIVFSVMGGLLFVL 339


>gi|167718522|ref|ZP_02401758.1| hypothetical protein BpseD_05837 [Burkholderia pseudomallei DM98]
          Length = 365

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 127/365 (34%), Gaps = 22/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S   +   +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +    VLT   +++E+++   +G S   LIKP+   A  + I +     +  
Sbjct: 62  MILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTEH 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + ++    + I+L +G  +   P   +  IM+F+ Y ++ +S    + 
Sbjct: 182 GKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVSQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L NP   N            +EF  R    L  +   +++I  A     
Sbjct: 242 PTTTGTSTPDLLRNPTNQNL-----------AEFAWRAGLPLIAINLMILAIPLAY---Q 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSIFLLMI 354
             +R +   + +++ I        + +  ++E+      +    L++ +  I ++   + 
Sbjct: 288 NPRRGRTVNLVMAVLIYLTYSNLLNVVQSQMERGKIAFGLGLIGLHVIVAGIVALLFWLR 347

Query: 355 KKKYT 359
            +   
Sbjct: 348 VRNRP 352


>gi|88859092|ref|ZP_01133733.1| hypothetical protein PTD2_08809 [Pseudoalteromonas tunicata D2]
 gi|88819318|gb|EAR29132.1| hypothetical protein PTD2_08809 [Pseudoalteromonas tunicata D2]
          Length = 348

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 117/344 (34%), Gaps = 23/344 (6%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           + I    + ++ +   +  +    +++ +    +P +   + P    +      + +  +
Sbjct: 1   MTIFVSEKFVRILTEATDGSLPAKLIISMLALKLPQLASFILPLSIFLGIILAYSRIYAD 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
           +E+ +    G S   +++  L  + +L++F      ++ P       +L  KA+      
Sbjct: 61  SEMTVFKACGVSEWYVVRVTLVSSFVLALFAGALTLVVAPWASEQEYRLEEKAKAESGLF 120

Query: 144 YLEENLFFRLDDD----LYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL--- 196
            L    F +  ++        I++         +      + +           I     
Sbjct: 121 SLRAGRFQQTGNEKAVVFIHDINQGGTELNKVFVAQFSENEKRPQARIVYAQHGIVEEGA 180

Query: 197 -DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNP 255
              Q + L  G+ +    ISK++ + +F  Y +Q +         K    + S LL  N 
Sbjct: 181 SGEQQLKLAAGKHYETDGISKELKVTEFSGYQVQIQEQAIEHQRRKLEAISSSALLQMNT 240

Query: 256 NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSIS 315
            +            ++F  RL   L  +I   I++       +  ++ K   +  ++   
Sbjct: 241 ADAA----------AQFQWRLAIPLSILILTFIAVPL---SEVNPRQGKFAKLVPAIVFY 287

Query: 316 FGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIKKK 357
              F   +     I   Q P  + + ++ L  +    LL+++ +
Sbjct: 288 LIYFILLNGAKFAIEDGQIPVGLGLWWIHLTALFIGMLLILRGR 331


>gi|154246776|ref|YP_001417734.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
 gi|154160861|gb|ABS68077.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
          Length = 364

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/353 (13%), Positives = 106/353 (30%), Gaps = 14/353 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTV 60
           +    Y  R    + ++  L  V +  ++  L+     +   + ++ +L  ++ Y  P+ 
Sbjct: 4   RILGFYFARRFASAVVLIFLSCVTLIVLVDFLEMARRTADREQVTVGLLALVTLYRAPSF 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + PF       +    ++R  EL++    G S    I P + +A L+ +F     N 
Sbjct: 64  TEQLMPFAVLFGAISTFVLLSRRLELVVARAVGLSVWQFITPPVLVAFLIGVFSTTVFNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTF------SYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           +    +    Q+  +   + +                 +D    I+              
Sbjct: 124 VSADFKERANQIEGEIFGSSSSGLLPQGKKEFWVRQQSVDGQSIIQAQATRQGGRALSGV 183

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +V   D     +   ++ S  L   A IL D    R      D             +   
Sbjct: 184 VVFEFDKADRLVERVEARSATLGDGAWILTDA---RVLVPGLDHQHYDTYLIATNLDPKQ 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
               ++     +   L      +        E YR +    L +    V   LI+ V   
Sbjct: 241 IQESLIAPETVSFWQL-PAAIRSAEQSGFGAERYRLQLQSLLARPFLLVAMVLIAAVVGL 299

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
              + R       I   +   F ++ G + +   +    +  P+   +   ++
Sbjct: 300 --RVFRFGGVGQTILGGVLAGFLLYVG-TKLAEDLGDAGFVHPVAAAWFPAVA 349


>gi|91206136|ref|YP_538491.1| putative permeases [Rickettsia bellii RML369-C]
 gi|91069680|gb|ABE05402.1| Putative permeases [Rickettsia bellii RML369-C]
          Length = 360

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 70/364 (19%), Positives = 160/364 (43%), Gaps = 13/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  + W+ Q+L+ + L       +   L +   ++PT+
Sbjct: 1   MLLYRKYFIKNILPLLIVITFSMTSLVWITQVLKLLYLF-DKGIKVMDFLSLIILVLPTL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G   + L  P L++A+++++  +   + 
Sbjct: 60  LFILLPIITVITIIYIYNNLKIERQLIILQTSGVGNLQLALPALYVALIVALLAYYISST 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +K   +  +     S +EE  F ++  D+ + I K +  N ++G+ I D+R+
Sbjct: 120 VMPLSHINLKSRLSFIKNNYISSMIEEKTFNKITKDITVYIDKKSTGNVMKGVIIFDNRN 179

Query: 181 TQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--- 235
           T    + +A SG  +I  +     L+ G        + +I+ + F S  ++ ++ N    
Sbjct: 180 TDNPSVVFANSGILNIHENDPIFELSKGSRQEYDI-NGNITQLTFDSLMIKLQNDNPLIS 238

Query: 236 --STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +T   +AN+  +  LL P  +     P       +E H+R+   L+  +   +++   
Sbjct: 239 QRTTHNKEANEYYIEELLEPPVD---LNPMKKIKLIAEAHQRIIWPLYNFVLPFLALAVF 295

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            K    ++   +  +F +LS+       F  + +   +N  +I   YL +F I SI L +
Sbjct: 296 LKYPYSKKTTFMPILFAALSVLIATSAHF-TLQNFASKNLAFITACYLNIFFILSIGLYL 354

Query: 354 IKKK 357
             +K
Sbjct: 355 FIRK 358


>gi|299530038|ref|ZP_07043465.1| permease YjgP/YjgQ [Comamonas testosteroni S44]
 gi|298722018|gb|EFI62948.1| permease YjgP/YjgQ [Comamonas testosteroni S44]
          Length = 369

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 131/365 (35%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + ++ +   + +++ +      + S + ++ + G+ +   LP
Sbjct: 2   LFDSSIRKELARSFGATAVVLITVVMTMMLIRTLGQAYKGSVSPSDVMLVMGFTVLGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I    G    +L+KP+L  A  + +   +    + 
Sbjct: 62  TILGLSLFVAIVGSLSRMYRDSEMVIWFAAGQGLASLLKPLLRFAWPVILITAVLALGVL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     I+Q+  + Q       +    F        +     +  + +    +       
Sbjct: 122 PWSYQQIEQIKTQFQQRSDLDRIAPGEFQESAGGTRVFFVDKDSPSDMAASNVFVVSRDP 181

Query: 183 THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +   +  G+   +   ++ +IL DG+          + I +FK Y +Q ++ N  TI 
Sbjct: 182 GKESVTSAKGAHLAVIKGQRMVILEDGQRMETRSDDGSVRITEFKEYGVQVDNDNPVTIE 241

Query: 240 LKA-NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             A        L+           +     RS    RL      + F ++ +      ++
Sbjct: 242 EMAARSMPTKDLI----------GKDEPIARSVLAWRLGLPFAALNFVILGLAI---SSV 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY----YIPILYLFLFCISSIFLLMI 354
             +      + I+L      +   +     +  N       + +L+  +  +S + LL  
Sbjct: 289 NPRAGNSSSLMIALFAFIVYYNLMTLGESWVSANKIGMWGILGLLHGSILIVSVLVLLAR 348

Query: 355 KKKYT 359
             +++
Sbjct: 349 HFRWS 353


>gi|262370180|ref|ZP_06063507.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262315219|gb|EEY96259.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 356

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/356 (11%), Positives = 108/356 (30%), Gaps = 4/356 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    ++ +    + L +   +  +  +   L  +  +          L+   +  P  L
Sbjct: 5   RIVAKHVTKTTAMAMLGATAILSVLQILFTYLGELGSLKE-GYGAWDALRYVLWGAPQYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    + +   L ++  N+EL+++ + G S   ++  V+  A++L +  F     +
Sbjct: 64  YEILPIAALIGSVLGLGTLASNSELIVMRSVGVSLWRIVGWVIRSALILVVLSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      K + +    A                      +       +Q   +    + 
Sbjct: 124 IPYTNEQAKGVKSHRTAAELGEVRGYWTREGQRFIYVDYANSQGQLKNVQ--VVDFDNNA 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   +  A+ G    D + I+ N  +V      +            L  +      + + 
Sbjct: 182 RLKGVLNAEQGQFVQDGRWILENTAQVDLLPTGNATAQKAAETPLALALQPKYVHMVTID 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             D + S L++       Y  ++ +TY+  F +++      +   LI+          + 
Sbjct: 242 PEDLSPSQLVSFMSYMHEY-SQVPKTYQLAFWQKVASPFALIALVLIACSFIFGPLRQQS 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I +   + F     F      +        +    L    +   L+ + +
Sbjct: 301 MGFRLVIALFTGLGFFYLQDFLGYASLVYSPSPAWFVFVPILLMFVAGGYLLQRAR 356


>gi|257126590|ref|YP_003164704.1| permease YjgP/YjgQ family protein [Leptotrichia buccalis C-1013-b]
 gi|257050529|gb|ACV39713.1| permease YjgP/YjgQ family protein [Leptotrichia buccalis C-1013-b]
          Length = 358

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/358 (12%), Positives = 113/358 (31%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI+    +SF++  +    I  + + +     +       +  LK   Y IP +
Sbjct: 1   MNKLDKYIIVNYVKSFILGMMMFFLIFLLAESITLTGWLMDGKLKGSEALKYLRYGIPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   ++ M +  E+  +  +G S   +    +  + L+S+ +F     
Sbjct: 61  VTNTAPLGVLLGSLLCISKMAKQLEVAAMKTSGISFARVALFPILFSALVSLGVFWLNYD 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
              +  +  + L             E++  F   D   +  S +   N     ++   + 
Sbjct: 121 YLGRANTKKEDLKTLKIDNKEPVRSEKDFVFVKIDKRTVLFSGHANKNNGTMNYVTILKF 180

Query: 181 TQTHKIY--YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
               K+      +    ++ +       ++      +        K +       +    
Sbjct: 181 ENGFKVIRKMYTASFAKINPKTNEWTFKDLKEYDSKTNVTKPFDTKKFKFVASMEDVLAS 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            +KA +  +  L            + L   R EF+ R++  L  ++  LI +      + 
Sbjct: 241 AVKAKNLTMPELREKTVYFTRVGADSLN-LRIEFYYRISFALSSLVMSLIGLSL---GSR 296

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             +      I +S+ I +  +   + +          I +       I  +  + + K
Sbjct: 297 YVRGGAAVNIGLSVIIGYAYYGVSTILRSMAVSGTVPIYVACFVPLIIFLVVGIKLFK 354


>gi|149378264|ref|ZP_01895976.1| predicted Permease [Marinobacter algicola DG893]
 gi|149357461|gb|EDM45971.1| predicted Permease [Marinobacter algicola DG893]
          Length = 352

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 127/360 (35%), Gaps = 29/360 (8%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
            L     ++ +    + ++ +   ++   + ++L +I  Y  P  L ++ P  F +    
Sbjct: 1   MLAVSGILLLVFMSGRFIKYLADAAAGELAGDVLFQIMAYRFPGFLELILPLGFFIGILL 60

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
               M   +E+ ++   G S   L+   L  +I + + +      + P     ++ +  +
Sbjct: 61  AYGRMYLESEMTVLFACGVSDKQLLMKTLLGSIPVMLVVGAMSLYVSPWGMKKVEGIFNE 120

Query: 136 AQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTH-KIYYAQSG 192
            + A  F  L    F      + +    +       L+G+FI +  +      I  A+ G
Sbjct: 121 QRQATEFEMLAPGRFQSLSSGERVTYTEALSEDKRRLEGVFIAEHSEDGKGLTIITAREG 180

Query: 193 SIDLDR----QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS 248
           S  +D     + ++L DG      P      +  F++Y L+  S ++             
Sbjct: 181 SQFIDEETGSRFLVLEDGARFEGLPGQLAYDVTGFEAYGLKIRSGSAGEKE--------- 231

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPI 308
             L                +R+  H R T  L   I  L+++       +  ++ +   +
Sbjct: 232 --LEEGLATSALMASDDPEHRAMLHWRFTLPLIVPIVTLLAVRL---SRVNPRQGRFFHL 286

Query: 309 FISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLF-LFCISSIFL-----LMIKKKYTK 360
             ++ +              +   + P +I +L++  LF +  ++L      + +++  +
Sbjct: 287 LPAMLVYITYLGLLIVARDALEGGKVPEWIGLLWVHGLFLVLGLWLQFGPAWLYRRRLLR 346


>gi|196228894|ref|ZP_03127760.1| permease YjgP/YjgQ family protein [Chthoniobacter flavus Ellin428]
 gi|196227175|gb|EDY21679.1| permease YjgP/YjgQ family protein [Chthoniobacter flavus Ellin428]
          Length = 376

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/376 (15%), Positives = 124/376 (32%), Gaps = 24/376 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPT 59
           MK  + Y+   +  +F ++   +  +  +  I  Q ++L+  +   L +++    Y++P 
Sbjct: 1   MKLIDRYVGGQLLVTFSLAVSVLSVVLVLGNIFKQLLDLLVKNDTPLEVVVSFLSYILPF 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L    P+ F      V   ++   EL+    +G S   L   V  LA       F    
Sbjct: 61  SLSFTIPWAFLTAVLLVFGRLSAEHELVAFRASGVSIPRLCYTVFLLAAACVATCFWINI 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P+ +  +K+      +    +    +L      +  I +   N       +    + 
Sbjct: 121 DVAPRAQGKMKEALYNVAVTNPLAMFGADLVIDSFPNKKIYLESSNGPELHNLLVYESND 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIIL----NDGEVHRKSPIS-----KDISIMKFKSYTLQT 230
           D    K+ +A+ G I+ D +   L     D     +         K    +  +  TL  
Sbjct: 181 DNLLLKVIFARRGLIETDGEKKQLLLHIYDATYEARDDDDVENLLKIKQGITMREATLPI 240

Query: 231 ESANSSTIVLK--ANDQNLSFLLNPNPNNPNYRPELLETYRS------EFHKRLTQWLFP 282
                     K          LL+             E          E +KR +  L  
Sbjct: 241 SLEELHKKYHKGGLPSMTTGALLDHLSEKTESTMTEKERIEQHSATITEINKRYSFSLAA 300

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP--ILY 340
           + F L+ +  A       +++      ISL ++  V++ F  I + + + P + P  +++
Sbjct: 301 ICFALVGVPLAITA---HRKETSIGFLISLCVA-LVYYFFIIIANTVREKPQWHPAELVW 356

Query: 341 LFLFCISSIFLLMIKK 356
           +           +  +
Sbjct: 357 VPNILCVVFGGWLFYR 372


>gi|221066428|ref|ZP_03542533.1| permease YjgP/YjgQ family protein [Comamonas testosteroni KF-1]
 gi|220711451|gb|EED66819.1| permease YjgP/YjgQ family protein [Comamonas testosteroni KF-1]
          Length = 367

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/369 (12%), Positives = 122/369 (33%), Gaps = 14/369 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS--TESLNILLKISGYLIP 58
           MK     I R + ++ L   L  + + +   ++  +  V S     +    L      IP
Sbjct: 1   MKVLRNLIYREVIQAVLYVSLAFLALFFFFDLVDEMRWVGSGNAGYTATRALLFVTLSIP 60

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             L  + P    +    V+    +++E  I+  +G      ++ +L L +   +   +  
Sbjct: 61  GHLYELMPIAVLIGAIFVMAKFAQSSEFTIMRTSGMGPWLALRTLLILGMSFVLLTVLVG 120

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI--SKYNPNNTLQGIFIV 176
           + I P   +  ++L   ++  ++       L  +  D        +  +P + +      
Sbjct: 121 DYIAPAADNFSQKLRVVSKGQISRGATGAWLKEKQGDHSVAINVGAVKSPGDFVNVRIFE 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                +      AQS  +D D +   L+  +  + +       +      ++   +  ++
Sbjct: 181 FDSKGRIAAQINAQSAQVDEDEEQWTLHGVQGSKVAQEGDVTKLSPISEASMNWPTKVTA 240

Query: 237 TIVLKA---NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            +V  A    D+  +  L     +     +  + Y  EF +++   L  ++  ++++  A
Sbjct: 241 AMVSGALLKPDRMTTIALFQFIRHLQDNGQAAQKYEIEFWRKVFYPLSCLVMVVLALPFA 300

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI-----SS 348
                 R       +F  +      F   +   +      ++  +       +      S
Sbjct: 301 YL--HFRSGGITAYVFGGVMAGISFFLLNNVFGYIGTLQSWWPWLAAAAPGLLYTALSLS 358

Query: 349 IFLLMIKKK 357
            F  ++ ++
Sbjct: 359 AFAWLVLRR 367


>gi|67459766|ref|YP_247390.1| permease [Rickettsia felis URRWXCal2]
 gi|67005299|gb|AAY62225.1| Predicted permeases [Rickettsia felis URRWXCal2]
          Length = 369

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 154/363 (42%), Gaps = 11/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++PT+
Sbjct: 10  MLLYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLF-DKGIKVMDFFSLIVLVLPTL 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G + + L  P L+ A+++ +  +   + 
Sbjct: 69  LFILLPVITVIAVIYIYNNLKVERQLIILQASGVNNVQLALPALYAALIVMLLAYYISST 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K      +     S +EE  F ++  D+ + I K +  N + G+ I D+R+
Sbjct: 129 ILPLSHINLKSRLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRN 188

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANS---- 235
                + +A SG++++     I    +  R+    + +++ + F S  ++ ++ N     
Sbjct: 189 ADNPSVVFAGSGTLNIYDNNPIFELNKGIRQEYDVNGNLTQLTFDSLMIKLQNDNPLVSQ 248

Query: 236 -STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +    +AN+  +S LL P  +    +        +E H+R+   L+  +   +++    
Sbjct: 249 RTKHNKEANEYYISELLAPPHDLAITKKI---KLIAEAHQRIIWPLYNFVLPFLALAVFL 305

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +    ++   +  +F +L++       F  + +   +N  +I   Y  L    +I L + 
Sbjct: 306 RYPYSKKTTFMPVLFSALTVLLVTSIHF-ILQNFASKNLDFIFACYSNLIIALTIGLYLF 364

Query: 355 KKK 357
            +K
Sbjct: 365 VRK 367


>gi|206602448|gb|EDZ38929.1| Putative permease, YjgP/YjgQ family [Leptospirillum sp. Group II
           '5-way CG']
          Length = 362

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 123/365 (33%), Gaps = 13/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    YI   + + FL+  + +  I  VI  +++I    S   +L ++ +   Y    V
Sbjct: 1   MRILTRYIASELFKIFLLCFISLEAIYGVIDSVEKIKDFLSHHAALPLIGQYFFYRSIEV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    + T   L  +++N EL  I   G S +   KP L L +L+S+        
Sbjct: 61  SFRVLPMSGLLATLLTLGILSKNHELTAIRAAGISLVKATKPFLALGVLISLISIAMNYQ 120

Query: 121 IEPKCRS---TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
           + P        IK +          ++   N++FR  +             +     ++ 
Sbjct: 121 LVPYAYQMTDYIKDVRIDQGKTGRVTFELNNVWFRHGNQDIYGARTIRDGGSELDKVVLY 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D+  H  +   + ++   +      DG + R  P    + I  F+             
Sbjct: 181 HLDSTFHLSWQIDAKTLRYHQGLWSFRDGRLTRFLPDGS-LKIESFQKMDTTLTRRPVDF 239

Query: 238 IVLKANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              K    +LS+  L+             E Y       +   +   +  L++I      
Sbjct: 240 TYEKTRMTHLSYPELDRYIALLEKSHLPREKYEVTRDAMIAFPIAAFLMVLMAIPFGI-- 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-----LFCISSIFL 351
              RQ        ISL +S   +W    +   + +    +P +  +     +F +S    
Sbjct: 298 REGRQVGIAKGFGISLLLSMS-YWTIYSLGLALGKGGVLLPWISAWFANMIVFFVSISLF 356

Query: 352 LMIKK 356
           L++ +
Sbjct: 357 LLLNR 361


>gi|330993928|ref|ZP_08317858.1| Lipopolysaccharide export system permease protein lptG
           [Gluconacetobacter sp. SXCC-1]
 gi|329758874|gb|EGG75388.1| Lipopolysaccharide export system permease protein lptG
           [Gluconacetobacter sp. SXCC-1]
          Length = 371

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 100/361 (27%), Gaps = 18/361 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +  LYI R    + L    F+  +  +   +  +  VS+      +++ +I+   IP   
Sbjct: 6   TLSLYIARQFTGATLAVIAFLTGLITMFDFIDLLRRVSTRPNVPTSLVSQIAFLHIPFAC 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +        + R++EL++    G S    +   +  A+L+        + +
Sbjct: 66  LEILPFGVLLGGILCFWRLARSSELVVARAAGISAWQFLAGPVICAVLIGAMATTCVSPL 125

Query: 122 EPKCRST-----------IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL 170
                                 S        +    +N       D+            L
Sbjct: 126 SSVMYRRAEALDRQYLRDNNGKSLNLSGGTLWLRQGDNGLVDHGVDIIHARQVRLNGGVL 185

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
               I   R      +                + +G      P      + +F +     
Sbjct: 186 HIGGITIFRLGPDDGLLTRIEAQSGYLGGGRWILEG-ARMLRPDEMPSDMGRF-TLHADL 243

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
             A         +  ++  L        N        +R  F   LT  +      L++ 
Sbjct: 244 TLAGVEESFASPDTLSVWAL-PGFIRQLNRSGFSTIRHRLHFQSLLTLPVLSGTMALVA- 301

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
            A       R+   I  I   ++  F +F   S I  +  +     P+L  +    + + 
Sbjct: 302 -AGFSMRPARRGGVIRMISSGVAAGFALF-ALSKIAAQFGETGTLPPVLAAWAPTGAGLC 359

Query: 351 L 351
           L
Sbjct: 360 L 360


>gi|291287413|ref|YP_003504229.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884573|gb|ADD68273.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 349

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 120/357 (33%), Gaps = 8/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL+ I   F +  +F V +  + +++   +L  +      ++++   Y +P+ 
Sbjct: 1   MKLLHKYILKEIYPIFFLGNVFFVLLLLLDKLIDLADLFFTKNVPAFLIIQTIVYYLPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +        ++ ++E+  +   G  +     P +   +   +   +    
Sbjct: 61  LVITIPTSAMLAVMIGFGRLSSDSEVTAMRAAGAGKKFFTTPTIIFGLTAFLLGIMMSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P          +K    ++ + ++E   +     +     K + N   + + I+D   
Sbjct: 121 LMPAGSRNAIGNLSKIAKLVSINDMKEKELYDELPGIVFYAVKKDSNAKYRKMVIIDKAQ 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                   A+          + L +G +   +   K  S + F ++TL +   ++  I +
Sbjct: 181 HSVITANEAEILPSGNAGLLMNLKNGRIVTLNEDGKH-SKINFDTFTLNSPLIDAKDISV 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            +              +     +    Y+ EF KR++     +I  +  +          
Sbjct: 240 NSERIM-------QTKDLIENFQEAPLYKFEFSKRISMPFAAIIMSIFGMSLGIFFHRSG 292

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +   I      +++   +F+            P+    L   LF + ++F      K
Sbjct: 293 RSLAIPITIAVVAVYNILFFAAENFAESGRIEPFLAAWLPNILFALIAVFFYRRAMK 349


>gi|299140954|ref|ZP_07034092.1| membrane protein [Prevotella oris C735]
 gi|298577920|gb|EFI49788.1| membrane protein [Prevotella oris C735]
          Length = 424

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 121/363 (33%), Gaps = 9/363 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  + YI++    +++ S   I+ I+ V+ I + +   S     L  I+       IP  
Sbjct: 65  KRLDWYIIKKFIGTYIYSIALIISISIVVDINENLAKFSEYHAPLKAIVFDYYMNFIPYF 124

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ +   G S   L++P +   IL+S   F     
Sbjct: 125 ANLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMITCILISAVSFYLSGY 184

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   +  +     +  +  +       +       N      G  +   +D
Sbjct: 185 VIPHSNVIRQDFESLYKNNKKNTAADNVMLQVGSGVIAYIQQYDNNTKRGYGFSLDKFQD 244

Query: 181 TQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +      A       I   +      + ++ + +   + I   + K  T+  E  +   
Sbjct: 245 KKLVSHMTATEIQYDTISDSKYHWTALNYKIRKFNGYREQIENGEKKDTTIMMEPTDLVY 304

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +        L +      +     +  Y+ E+HKR+       I  +I +      A
Sbjct: 305 SKGQQETFTNPELSDYISKQIDRGSSNVVQYQVEYHKRIAASFASFILTIIGLSL---SA 361

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKK 356
             R+      + I L++SFG +     +      N    P++  ++   I ++      +
Sbjct: 362 KKRKGGMGLYLGIGLALSFG-YIMLQTVSSTFAINANLPPVIAAWIPNFIFAVVAYFCYR 420

Query: 357 KYT 359
           +  
Sbjct: 421 QAP 423


>gi|85706341|ref|ZP_01037435.1| permease, YjgP/YjgQ family protein [Roseovarius sp. 217]
 gi|85669114|gb|EAQ23981.1| permease, YjgP/YjgQ family protein [Roseovarius sp. 217]
          Length = 363

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/357 (11%), Positives = 102/357 (28%), Gaps = 14/357 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  R    SFL   + +V +  +I ++  +        +   +L I    +P    
Sbjct: 2   ILERYFGRRFFMSFLGVTVTLVVMLGLIDLMDELGDFPE--LAFGQVLGIVLLKLPEAYY 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + +  +   + R +EL+++  +G S +  +     +A+ + +      N + 
Sbjct: 60  EIIPLVMILASVALFLRLARTSELVVLRASGRSALQGLLAPAAVALAIGLLGLAVGNPLV 119

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR------LDDDLYIKISKYNPNNTLQGIFIV 176
                    L        +      +              +       +   TL      
Sbjct: 120 AATSKRHHDLVNSYSGQASSDLAIASEGLWLRQSAAEGQTVIYAARASSDLGTLYAPSFY 179

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESAN 234
           D           + + +   +   ++           ++ + S  +    T+        
Sbjct: 180 DFAPDGKPLRRISATSAQLEEGAWVLTEAKIWDLAQGVNPEASAREDAQMTVPSDLTQDR 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                       +  L                 Y   F   L Q +F V   LIS     
Sbjct: 240 ILDSFGSPEYVPIWEL-PKFIAQLEEAGFSARRYAIWFQSELAQPVFLVALVLISAAF-- 296

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                R       +  ++ + FG+ +  ++    + +N     +L  +   ++S+F+
Sbjct: 297 TMQHTRGANVGLSVLTAVLLGFGLHYIRNFAQ-ILGENGQIPILLAAWAPPVASLFI 352


>gi|53718606|ref|YP_107592.1| putative permease [Burkholderia pseudomallei K96243]
 gi|53725611|ref|YP_102446.1| permease [Burkholderia mallei ATCC 23344]
 gi|67640815|ref|ZP_00439609.1| permease YjgP/YjgQ family protein [Burkholderia mallei GB8 horse 4]
 gi|76811087|ref|YP_332585.1| permease [Burkholderia pseudomallei 1710b]
 gi|121601060|ref|YP_993649.1| hypothetical protein BMASAVP1_A2340 [Burkholderia mallei SAVP1]
 gi|124383987|ref|YP_001028889.1| hypothetical protein BMA10229_A2945 [Burkholderia mallei NCTC
           10229]
 gi|126450363|ref|YP_001081198.1| hypothetical protein BMA10247_1654 [Burkholderia mallei NCTC 10247]
 gi|126453581|ref|YP_001065301.1| hypothetical protein BURPS1106A_1021 [Burkholderia pseudomallei
           1106a]
 gi|134281291|ref|ZP_01768000.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|167003639|ref|ZP_02269425.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|167737554|ref|ZP_02410328.1| hypothetical protein Bpse14_05785 [Burkholderia pseudomallei 14]
 gi|167814688|ref|ZP_02446368.1| hypothetical protein Bpse9_06062 [Burkholderia pseudomallei 91]
 gi|167823142|ref|ZP_02454613.1| hypothetical protein Bpseu9_05663 [Burkholderia pseudomallei 9]
 gi|167844706|ref|ZP_02470214.1| hypothetical protein BpseB_05398 [Burkholderia pseudomallei B7210]
 gi|167893241|ref|ZP_02480643.1| hypothetical protein Bpse7_05715 [Burkholderia pseudomallei 7894]
 gi|167901698|ref|ZP_02488903.1| hypothetical protein BpseN_05425 [Burkholderia pseudomallei NCTC
           13177]
 gi|167909937|ref|ZP_02497028.1| hypothetical protein Bpse112_05556 [Burkholderia pseudomallei 112]
 gi|167917974|ref|ZP_02505065.1| hypothetical protein BpseBC_05423 [Burkholderia pseudomallei
           BCC215]
 gi|217419643|ref|ZP_03451149.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|226194506|ref|ZP_03790104.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|242317338|ref|ZP_04816354.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|254177868|ref|ZP_04884523.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|254190839|ref|ZP_04897346.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254196871|ref|ZP_04903295.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|254199348|ref|ZP_04905714.1| putative membrane protein [Burkholderia mallei FMH]
 gi|254205664|ref|ZP_04912016.1| putative membrane protein [Burkholderia mallei JHU]
 gi|254258333|ref|ZP_04949387.1| putative membrane protein [Burkholderia pseudomallei 1710a]
 gi|254357822|ref|ZP_04974095.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|52209020|emb|CAH34960.1| putative permease protein [Burkholderia pseudomallei K96243]
 gi|52429034|gb|AAU49627.1| permease, putative [Burkholderia mallei ATCC 23344]
 gi|76580540|gb|ABA50015.1| permease, putative [Burkholderia pseudomallei 1710b]
 gi|121229870|gb|ABM52388.1| putative membrane protein [Burkholderia mallei SAVP1]
 gi|124292007|gb|ABN01276.1| putative membrane protein [Burkholderia mallei NCTC 10229]
 gi|126227223|gb|ABN90763.1| putative membrane protein [Burkholderia pseudomallei 1106a]
 gi|126243233|gb|ABO06326.1| putative membrane protein [Burkholderia mallei NCTC 10247]
 gi|134247597|gb|EBA47682.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|147748944|gb|EDK56018.1| putative membrane protein [Burkholderia mallei FMH]
 gi|147753107|gb|EDK60172.1| putative membrane protein [Burkholderia mallei JHU]
 gi|148026949|gb|EDK84970.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|157938514|gb|EDO94184.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|160698907|gb|EDP88877.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|169653614|gb|EDS86307.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|217396947|gb|EEC36963.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|225933591|gb|EEH29580.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|238521610|gb|EEP85060.1| permease YjgP/YjgQ family protein [Burkholderia mallei GB8 horse 4]
 gi|242140577|gb|EES26979.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|243060865|gb|EES43051.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|254217022|gb|EET06406.1| putative membrane protein [Burkholderia pseudomallei 1710a]
          Length = 365

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 127/365 (34%), Gaps = 22/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S   +   +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +    VLT   +++E+++   +G S   LIKP+   A  + I +     +  
Sbjct: 62  MILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTEH 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + ++    + I+L +G  +   P   +  IM+F+ Y ++ +S    + 
Sbjct: 182 GKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVSQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L NP   N            +EF  R    L  +   +++I  A     
Sbjct: 242 PTTTGTSTPDLLRNPTNQNL-----------AEFAWRAGLPLIAINLMILAIPLAY---Q 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSIFLLMI 354
             +R +   + +++ I        + +  ++E+      +    L++ +  I ++   + 
Sbjct: 288 NPRRGRTVNLVMAVLIYLTYSNLLNVVQSQMERGKIAFGLGLIGLHVIVAGIVALLFWLR 347

Query: 355 KKKYT 359
            +   
Sbjct: 348 VRNRP 352


>gi|238651117|ref|YP_002916975.1| hypothetical protein RPR_07620 [Rickettsia peacockii str. Rustic]
 gi|238625215|gb|ACR47921.1| hypothetical protein RPR_07620 [Rickettsia peacockii str. Rustic]
          Length = 369

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 156/363 (42%), Gaps = 11/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++PT+
Sbjct: 10  MLLYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLF-DKGIKVMDFFSLIVLVLPTL 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G + + L  P L++A+++ +  +   + 
Sbjct: 69  LFILLPVITVITVIYIYNNLKVERQLIILQASGVNNVQLALPALYVALIVMLLAYYISSN 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K      +     S +EE  F ++  D+ + I K +  N + G+ I D+R+
Sbjct: 129 ILPLSHINLKSRLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRN 188

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANS---- 235
                + +A SG++++   + I    +  R+    + +++ + F S  ++ ++ N     
Sbjct: 189 ADNPSVVFASSGTLNIYDNSPIFELNKGIRQEYDVNGNLTQLTFDSLMIKLQNDNPLVSQ 248

Query: 236 -STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +    +AN+  +S LL P  +    +        +E H+R+   L+  +   +++    
Sbjct: 249 RTKHNKEANEYYISELLAPPHDLAITKKI---KLIAEAHQRIIWPLYNFVLPFVALAVFL 305

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +    ++   +  +F +L++       F  + +   +N  +I   Y  L    +I L + 
Sbjct: 306 RYPYSKKTTFMPVLFSALTVLLVTSIHF-ILQNFASKNLDFIFACYFNLVIALTIGLYLF 364

Query: 355 KKK 357
            +K
Sbjct: 365 VRK 367


>gi|301058948|ref|ZP_07199917.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
 gi|300446944|gb|EFK10740.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
          Length = 355

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 111/355 (31%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  ++YI     + FL+  L +  +  +I+ L +++ V      +   L +    +P  
Sbjct: 1   MKLLDIYIGSRFLKCFLLVILILAVLFSLIEFLSQLDDVGKGMYRVENALLLVMLTLPKC 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  +  + ELL + N G S   +  PV    +L+ +   I    
Sbjct: 61  LLDLLPISALLGGVISLGLLADHGELLAMQNAGISAPRVCAPVFATLMLVIMTSGIMAET 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     + + S    L      +  + F+    + YI + K        G+ I +   
Sbjct: 121 IIPDM-EQMARKSRTRALYGAGVNVTRHGFWARRQNAYIHVHKILDEGVAAGVDIFEFDP 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               K +     +  L  Q   L              I      +          + + L
Sbjct: 180 RGRLKTFTHALSARILGHQQWSLTGIRQTVFKDRGVAIKGAASWTLEPFLSPDQVALLEL 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV- 299
                +   L+           +  + YR    ++L   L   +  L S+          
Sbjct: 240 SPYCLSTPDLI-GYIKALEDGGQNADPYRLALWRKLGVPLTTGVMVLFSVTFVLGANRKV 298

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           R   +I    +   + +       +    +  NP    +L +      +++ L +
Sbjct: 299 RAGSRITMASLIGLLLYFADQLIMHTGLLLNLNPPITAMLPVVFISGLAVWRLRL 353


>gi|310816138|ref|YP_003964102.1| putative permease [Ketogulonicigenium vulgare Y25]
 gi|308754873|gb|ADO42802.1| putative permease [Ketogulonicigenium vulgare Y25]
          Length = 360

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/356 (11%), Positives = 108/356 (30%), Gaps = 15/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y      ++FL +      +  +I++++++          +    ++   +P  L 
Sbjct: 2   ILHRYFALRYFKAFLGTAAGFFLMLVMIELIEQLRRFGGQ----SDFPALTLLNVPATLY 57

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P    +    +   + R++E+++    G S +  +   + + +L+ +   ++ N I 
Sbjct: 58  QVLPLIVIISALVLFLGLARSSEMVVTRAAGRSALIALIAPVLIVMLMGLLAVMAFNPIV 117

Query: 123 PKCRSTIKQLSAKA----QLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
                      A      ++               D    I+ +  +P+ T      + S
Sbjct: 118 ASTSREYDNRIATITGSSRILQIGGDAIWLRQGDEDGQSVIRAAASDPDGTTLRGVTMLS 177

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK---DISIMKFKSYTLQTESANS 235
                       + +  L      + + +V   +         +I    +          
Sbjct: 178 YTNDGIPARRIDAAAATLSGDHWQMQNAKVWPLNTGQNPEASATIHATLAVPSNLSPDEI 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                     ++  L               +         L    F V   LI+ V    
Sbjct: 238 RNSFGNPASISVWEL-PAFIKRMEDAGFTAQRQIVHLQSELALPAFLVAMMLIAAVFTL- 295

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               R  +    +  ++ ISF +++  + +   + +N    P+L  ++  +++I L
Sbjct: 296 -RHQRGGRTGMMVLFAVLISFSLYFIRN-LAQILGENGQLTPLLAAWVTPLAAIAL 349


>gi|237811281|ref|YP_002895732.1| permease YjgP/YjgQ family protein [Burkholderia pseudomallei
           MSHR346]
 gi|254181440|ref|ZP_04888037.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|184211978|gb|EDU09021.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|237503123|gb|ACQ95441.1| permease YjgP/YjgQ family protein [Burkholderia pseudomallei
           MSHR346]
          Length = 365

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 128/365 (35%), Gaps = 22/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S   +   +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +    VLT   +++E+++   +G S   LIKP+   A  + I +     +  
Sbjct: 62  MILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +    +  +   +  +   Q
Sbjct: 122 PWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTEQ 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + ++    + I+L +G  +   P   +  IM+F+ Y ++ +S    + 
Sbjct: 182 GKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVSQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L NP   N            +EF  R    L  +   +++I  A     
Sbjct: 242 PTTTGTSTPDLLRNPTNQNL-----------AEFAWRAGLPLIAINLMILAIPLAY---Q 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSIFLLMI 354
             +R +   + +++ I        + +  ++E+      +    L++ +  I ++   + 
Sbjct: 288 NPRRGRTVNLVMAVLIYLTYSNLLNVVQSQMERGKIAFGLGLIGLHVIVAGIVALLFWLR 347

Query: 355 KKKYT 359
            +   
Sbjct: 348 VRNRP 352


>gi|317503389|ref|ZP_07961433.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315665484|gb|EFV05107.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 385

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 121/363 (33%), Gaps = 9/363 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  + YI++    +++ S   I+ I+ VI I + +   S     L  I+       IP  
Sbjct: 26  KRLDWYIIKKFIGTYIYSIALIISISIVIDINENLAKFSEYHAPLKAIVFDYYMNFIPYF 85

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ +   G S   L++P +   IL+S+  F     
Sbjct: 86  ANLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMISCILISVVSFYLSGY 145

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   +  +     +  +  +       +       N      G  +   +D
Sbjct: 146 VIPHSNVIRQNFESLYKNKKKTTAADNVMLNVGKGTIAYIQHYDNNTKRGYGFSLDKFQD 205

Query: 181 TQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +      A       I   +      + ++ + +   + I     +  T+  E  +   
Sbjct: 206 KKLVSHMTAMEIQYDTISDSKYHWTAQNYKIRKFNGYREQIENGAKRDTTILMEPNDLVY 265

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +        L +      +     +  Y+ E+HKR+       I  +I +      A
Sbjct: 266 SKGQQETFTNPELSDYISKQIDRGSSNVVQYQVEYHKRIAASFASFILTIIGLSL---SA 322

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKK 356
             R+      + I L++SFG +     +      N    PI+  ++   I +I      K
Sbjct: 323 KKRKGGMGMYLGIGLALSFG-YIMLQTVSSTFAINANLPPIIAAWIPNIIFAIVAYFCYK 381

Query: 357 KYT 359
           +  
Sbjct: 382 QAP 384


>gi|115379870|ref|ZP_01466933.1| permease YjgP/YjgQ, putative [Stigmatella aurantiaca DW4/3-1]
 gi|115363129|gb|EAU62301.1| permease YjgP/YjgQ, putative [Stigmatella aurantiaca DW4/3-1]
          Length = 342

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 124/338 (36%), Gaps = 11/338 (3%)

Query: 30  IQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLII 89
           +Q L    ++  S  +L  + ++  YL P  L    P  F M     L  ++ + EL  +
Sbjct: 1   MQFLLGTEVLLGSAVTLTDIGRLILYLTPHFLVKALPIAFLMAILLGLGRLSEDRELTAL 60

Query: 90  DNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENL 149
              G S + L+   + + +LL+  + +     +P   +++K+L  +         ++  +
Sbjct: 61  QALGISPVQLLLGPMAIGLLLAGLMALLAFTAQPWGLTSVKELVNEVIKKNVAGDVKSGV 120

Query: 150 FFRLDDDLYIKISKYNPNN-TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ----AIILN 204
           F+    DL +   + +        + + D R+  +  +  AQ G + +        ++L 
Sbjct: 121 FYEDLSDLTLYAERVSREGGEWTHVLLHDDREPSSPLLVLAQRGRVSMREGDEALRLVLE 180

Query: 205 DGEVHRKSPISKDISIMKFKSYTLQTE-----SANSSTIVLKANDQNLSFLLNPNPNNPN 259
           +GEVHR +  + D S+++F+   +        +  S+    +  + +   L+        
Sbjct: 181 EGEVHRATRSTADYSLLRFEQGEISVGLGGSMNRKSNRFRSQKEEMSPGELIQA-AEEAE 239

Query: 260 YRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
                   +    H RL   + P+ F L+    A  R    +            + + + 
Sbjct: 240 KSGGNPRPFLMAIHMRLGNAVAPLSFALLGTPLAIGRKQAGRAWGYLLTLSGYVLFYVLS 299

Query: 320 WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             F  + ++ +        L   LF +  +  +    +
Sbjct: 300 RVFETLGNQEKLPMVLAAQLPNILFSVLGVVAMWRVSR 337


>gi|325983220|ref|YP_004295622.1| permease YjgP/YjgQ family protein [Nitrosomonas sp. AL212]
 gi|325532739|gb|ADZ27460.1| permease YjgP/YjgQ family protein [Nitrosomonas sp. AL212]
          Length = 358

 Score = 97.8 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 139/368 (37%), Gaps = 20/368 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R I   F +  L ++ +       + +    + T  +  L+K+        
Sbjct: 1   MKLIERYIAREIMLPFTVVILILIGLFASFSSARLLAGAVTETLGIAGLIKLVFLKTLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     L  +N++ EL +I + G S   ++  VL +AI + I   +  + 
Sbjct: 61  LEVLIPIALYISVIMGLGRLNKDQELNVIRSVGISGHRIVIAVLSVAIPVGIISGMLSSY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDS 178
           + P        L A+A+  L  +  +   F+       +    +K   +  +Q IF    
Sbjct: 121 VRPWAYGESYILDAQAEAELNTNRFQAGRFYGSEKSGRVIYVRNKNEADKQMQNIFHYIK 180

Query: 179 RDTQTHKIYYAQSGSID----LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +   +  +   Q+  I      DR  I L++G +++ + I+    +++FK      ++  
Sbjct: 181 KPDSSEIVIAKQAQQIKPTAEDDRPHIQLSEGTIYQLTSIASTDDVIQFKKMIYFIDNDF 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +    KA      +               +    +E   R+++ L  V+  LI++    
Sbjct: 241 VTNYRRKAAATRTLW------------ESDVPRDIAELQWRISRPLATVLLALIALTFIH 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY--LFLFCISSIFLL 352
                 + +K + I   +  ++    G +    + E       + +  L +      + L
Sbjct: 289 TAPRQDKTEKTYLIAALVFAAYYNLSGLAKTWVEQETIGSVPGVWWLELLMLLALITYAL 348

Query: 353 MIKKKYTK 360
           ++++K ++
Sbjct: 349 IVRQKQSR 356


>gi|229587242|ref|YP_002845743.1| Putative permease [Rickettsia africae ESF-5]
 gi|228022292|gb|ACP54000.1| Putative permease [Rickettsia africae ESF-5]
          Length = 369

 Score = 97.8 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 156/363 (42%), Gaps = 11/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++PT+
Sbjct: 10  MLLYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLF-DKGIKVMDFFSLIVLVLPTL 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G + + L  P L++A+++ +  +   + 
Sbjct: 69  LFILLPVIMVITVIYIYNNLKVERQLIILQTSGVNNVQLALPALYVALIVMLLAYYISSN 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K      +     S +EE  F ++  D+ + I K +  N + G+ I D+R+
Sbjct: 129 ILPLSHINLKSRLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRN 188

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANS---- 235
                + +A SG++++   + I    +  R+    + +++ + F S  ++ ++ N     
Sbjct: 189 ADNPSVVFAGSGTLNIYDNSPIFELNKGIRQEYDVNGNLTQLTFDSLIIKLQNDNPLVSQ 248

Query: 236 -STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +    +AN+  +S LL P  +    +        +E H+R+   L+  +   +++    
Sbjct: 249 RTKHNKEANEYYISELLAPPHDLAITKKI---KLIAEAHQRIIWPLYNFVLPFVALAVFL 305

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +    ++   +  +F +L++       F  + +   +N  +I   Y  L    +I L + 
Sbjct: 306 RYPYSKKTTFMPVLFSALTVLLVTSIHF-ILQNFASKNLDFIFACYFNLVIALTIGLYLF 364

Query: 355 KKK 357
            +K
Sbjct: 365 VRK 367


>gi|165933910|ref|YP_001650699.1| hypothetical protein RrIowa_1576 [Rickettsia rickettsii str. Iowa]
 gi|165908997|gb|ABY73293.1| hypothetical protein RrIowa_1576 [Rickettsia rickettsii str. Iowa]
          Length = 369

 Score = 97.8 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 156/363 (42%), Gaps = 11/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++PT+
Sbjct: 10  MLLYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLF-DKGIKVMDFFSLIVLVLPTL 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G + + L  P L++A+++ +  +   + 
Sbjct: 69  LFILLPVIMVITVIYIYNNLKVERQLIILQASGVNNVQLALPALYVALIVMLLAYYISST 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K      +     S +EE  F ++  D+ + I K +  N + G+ I D+R+
Sbjct: 129 ILPLSHINLKSRLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRN 188

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANS---- 235
                + +A SG++++   + I    +  R+    + +++ + F S  ++ ++ N     
Sbjct: 189 ADNPSVVFAGSGTLNIYDNSPIFELNKGIRQEYDVNGNLTQLTFDSLMIKLQNDNPLVSQ 248

Query: 236 -STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +    +AN+  +S LL P  +    +        +E H+R+   L+  +   +++    
Sbjct: 249 RTKHNKEANEYYISELLAPPHDLAITKKI---KLIAEAHQRIIWPLYNFVLPFVALAVFL 305

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +    ++   +  +F +L++       F  + +   +N  +I   Y  L    +I L + 
Sbjct: 306 RYPYSKKTTFMPVLFSALTVLLVTSIHF-ILQNFASKNLDFIFACYFNLVIALTIGLYLF 364

Query: 355 KKK 357
            +K
Sbjct: 365 VRK 367


>gi|238897461|ref|YP_002923138.1| putative permease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465216|gb|ACQ66990.1| putative permease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 364

 Score = 97.8 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 130/360 (36%), Gaps = 19/360 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+++ I ++ +     + FI +  +++  ++ + +     +++  + G     +  +
Sbjct: 3   ITKYLIKEILKTQVAILFILSFIFFSQKLVTILDDIINHDIPAHLIFSLLGLGFAKMAEL 62

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P             +   +E++ +   G  +  LIK  L LA L S+F  I+     P
Sbjct: 63  ILPLSLFFALLMTYGKLYNESEIIAMYACGVGKTRLIKVALVLAALTSLFATINVFYFSP 122

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RDT 181
                 K++  + ++    S L +  F    D   +   +   N     IF+       T
Sbjct: 123 WSVKHEKKIINEERVNPGLSALVKGQFQSSPDGKIVLFIQDIQNKKFHKIFLAQRESNHT 182

Query: 182 QTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           Q   +  A SG I       Q + LN G  +   P   D  I  F  Y       + +  
Sbjct: 183 QRPTVVVANSGYISAPAPGIQLLTLNHGMNYEGIPPLGDFRITYFNHYQAVISRKSVTKN 242

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A   ++S L   N  +           R+E H RLT  +  VI   +++       +
Sbjct: 243 SNTAQQMSMSSLWEANDPDT----------RAELHWRLTLIVSVVIMAFMAV---PLSQV 289

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             ++ ++  +  ++ +    F   S +      N    P+++L+L       L +I   +
Sbjct: 290 NPRQGRVLSMLPAMLLYLIFFLLQSTLRSNAGNN-RLDPLIWLWLVNGLYTILAIILNIW 348


>gi|260891450|ref|ZP_05902713.1| permease, YjgP/YjgQ family [Leptotrichia hofstadii F0254]
 gi|260858833|gb|EEX73333.1| permease, YjgP/YjgQ family [Leptotrichia hofstadii F0254]
          Length = 358

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 115/360 (31%), Gaps = 10/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI+    +SF++  +    I  + + +     +       +  ++   Y  P +
Sbjct: 1   MNKLDKYIILNYVKSFILGMMMFFLIFLLAESISLTGWIMDGKLKGHDAIRYLRYGTPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   ++ M +  E+  +  +G S   +    +  + L+S+ +F     
Sbjct: 61  ITNTAPLGVLLGSLLCISKMAKQLEIAAMKTSGISFARIALFPMIFSFLVSMGVFWLNYD 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI----V 176
              K  +  + L +           E+   F   D   +  S++   NT     I     
Sbjct: 121 ALGKSNTKKENLKSLKIDNKEPVKSEKKFIFVKIDKKTVLFSEHVNKNTGTMEHIEILKF 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +    +  KIY +  G I+         D  +      +  +     K +    +  +  
Sbjct: 181 EKGFKEISKIYTSPFGKINPKTNEWTFKD--LKEYDDKTNLMKPADTKKFKFIAKMEDVL 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              +KA +  +  L            + L   R EF+ R++  L   +  LI +      
Sbjct: 239 ASPVKAKNLTMPELREKVVYFTRVGADSLN-LRIEFYYRISFALSSFVMCLIGLSL---G 294

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +   +      I +S+ I +  +   + +          I         I  I  + + +
Sbjct: 295 SRYVRGGAALNIGLSVIIGYAYYGVSTILRSMAVSGAVPIYAACFIPLIIFLIVGIKLFR 354


>gi|237744435|ref|ZP_04574916.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229431664|gb|EEO41876.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 363

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 115/362 (31%), Gaps = 11/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++Y+ +   + FLM+ +  + +  + Q  + I  ++        +L     L+P + 
Sbjct: 3   KKMDIYVSKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLVGGEILDYILNLLPKMF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     ++ M  N E++ +  +G   + +++  L +A ++S+ +F   N I
Sbjct: 63  VETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFINNSI 122

Query: 122 EPKCRSTIKQLSA-----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
             K  + I            +L  T               L  +I++         +   
Sbjct: 123 YTKSLAKINFYRRGEVDESLKLPTTKENAFFINNADGYLYLMGEINRETGVAENIEVVKF 182

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           ++  ++  +I  A+S   D +    I ++  ++                      S+   
Sbjct: 183 ETEISKPKEIITAKSAKFDTEENKWIFSNVNIYNVDTKETITKTEYKSDLYKDDPSSFIR 242

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                     +  L            E    Y SE  K+ +      I   I +      
Sbjct: 243 ASAEDPRMLTIKEL-KKTIKEQKSIGEDTRIYLSELAKKYSFPFASFIVAFIGLSV--SS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
             VR  +    + I +   +G +   S     +  N    P +  ++       I +  +
Sbjct: 300 KYVRGGRTTMNLVICVIAGYGYYLV-SGAFEAMSLNGILNPFIASWIPNILYLIIGIYFM 358

Query: 355 KK 356
            +
Sbjct: 359 NR 360


>gi|237747611|ref|ZP_04578091.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229378973|gb|EEO29064.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 381

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/382 (13%), Positives = 117/382 (30%), Gaps = 28/382 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y L  I RS L      + +     ++  ++ V      L  +L       P  
Sbjct: 1   MKILQRYFLSQILRSVLFVLFAFLGLFAFFDLIGELSSVGRGGYQLQHVLIYILLGFPGY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + PF   + T   L     N+E  I+  +  S +     +  + ++  +F F+   +
Sbjct: 61  IYELMPFAVLIGTIYALAMFASNSEYTIMRVSSLSTLDACWMLAKVGLVFLVFTFLVGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----------DDDLYIKISKYNPNNT 169
           I P       +                 ++ +                ++ + K  P+ T
Sbjct: 121 ITPVSARVATEFRNNLIGRAVGDGFRTGMWSKDTIRKDGIDGPVIGSRFMNVKKMQPDGT 180

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           L+ I + +  D        +   +  L      LN+      +  +         + +L 
Sbjct: 181 LEQIRLYEFNDNLELTKTVSAKNARYLGNHEWQLNEVVESHLTAANTKNKKFPDSAPSLN 240

Query: 230 TESANSSTIVLKAN-----------DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
           T+  +S  +V               ++  ++ L     +     +   +Y+  F K++  
Sbjct: 241 TKKLDSLIMVSDITPDILSVISVDANKMSAYELAIYNQHLVENKQDATSYQMAFWKKIIY 300

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
                +   +++  A      R       IF  + I        +   H    N +   +
Sbjct: 301 PFSVFVMMALALPFAYL--HFRSGGVSLKIFSGIMIGVAFILINNLFSHVGLLNTWPPFL 358

Query: 339 LYLFL----FCISSIFLLMIKK 356
             +      F  + I L  +++
Sbjct: 359 TAVIPSALFFLSAVIALWWVER 380


>gi|299530037|ref|ZP_07043464.1| permease YjgP/YjgQ [Comamonas testosteroni S44]
 gi|298722017|gb|EFI62947.1| permease YjgP/YjgQ [Comamonas testosteroni S44]
          Length = 367

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/369 (12%), Positives = 122/369 (33%), Gaps = 14/369 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS--TESLNILLKISGYLIP 58
           MK     I R + ++ L   L  + + +   ++  +  V S     +    L      IP
Sbjct: 1   MKVLRNLIYREVIQAVLYVSLAFLALFFFFDLVDEMRWVGSGNAGYTATRALLFVTLSIP 60

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             L  + P    +    V+    +++E  I+  +G      ++ +L L +   +   +  
Sbjct: 61  GHLYELMPIAVLIGAIFVMAKFAQSSEFTIMRTSGMGPWLALRTLLVLGMSFVVLTVLVG 120

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI--SKYNPNNTLQGIFIV 176
           + I P   +  ++L   A+  ++       L  +  +        +   P + +      
Sbjct: 121 DYIAPAADNFSQKLRVVAKGQISRGATGAWLKEKQGNHSVAINVGAVKAPGDFVNVRIFE 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                +      AQS  +D D++   L   +  + +       + +    ++   +  ++
Sbjct: 181 FDSKGRIAAQINAQSAQVDEDKELWTLKGVQGSKVAQEGDVTKLSRISEASMNWPTKVTA 240

Query: 237 TIVLKA---NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            +V  A    D+  +  L     +     +  + Y  EF +++   L  ++  ++++  A
Sbjct: 241 AMVSGALLKPDRMTTIALFQFVRHLQDNGQAAQKYEIEFWRKVFYPLSCLVMVVLALPFA 300

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI-----SS 348
                 R       +F  +      F   +   +      ++  +       +      S
Sbjct: 301 YL--HFRSGGITAYVFGGVMAGISFFLLNNVFGYIGTLQSWWPWLAAAAPGLLYTALSLS 358

Query: 349 IFLLMIKKK 357
            F  ++ ++
Sbjct: 359 AFGWLVLRR 367


>gi|77165379|ref|YP_343904.1| permease YjgP/YjgQ [Nitrosococcus oceani ATCC 19707]
 gi|254433097|ref|ZP_05046605.1| putative permease, YjgP/YjgQ family [Nitrosococcus oceani AFC27]
 gi|76883693|gb|ABA58374.1| permease YjgP/YjgQ [Nitrosococcus oceani ATCC 19707]
 gi|207089430|gb|EDZ66701.1| putative permease, YjgP/YjgQ family [Nitrosococcus oceani AFC27]
          Length = 381

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 115/347 (33%), Gaps = 20/347 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YIL+ +  +     L ++ I   I+ ++ ++  +        +L +SGY     L 
Sbjct: 6   IVDRYILKELSLNATAITLVLLLIFGGIRFIRFLSQATEGKVPGEAILALSGYEAIGALV 65

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  M  + E++ +   G SR  L++ VL   + L+I +      + 
Sbjct: 66  LLLPLASFLAVLLALGRMGADNEVIALFACGVSRGHLLRVVLTFGLALAIGVGGISLYLG 125

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDT 181
           P   +   +L  +A LA   S L    F                 +        +   + 
Sbjct: 126 PAASAEGYRLKQQALLAAETSGLVAGNFKEAQHGQRVFYAESLTEDGLGMKNVFIQVWEP 185

Query: 182 QTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +  A  G +  D     + +IL DG  +        + I  F+ + +  +   +  
Sbjct: 186 TQKTLLRAARGHLQTDEATGDKYLILEDGYRYELMGEEVGVRIFSFERHGILVKKGGAQE 245

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             ++        L                   +E   R++  +  ++  ++++  A    
Sbjct: 246 FRIRHQTLPTLTLWEM----------GAPKDIAEVQWRISMPIITLLLVMLAVPLA---R 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLF 342
              ++ +   +  ++ +            + +  E  P  + + ++ 
Sbjct: 293 SGPRQGRYAGLVPAVLVYVIYSNMLGIARNWVEHEVIPASLGLWWIH 339


>gi|213855150|ref|ZP_03383390.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 356

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/348 (12%), Positives = 110/348 (31%), Gaps = 2/348 (0%)

Query: 10  RCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCF 69
           + I  + +M+   +V ++ +I+ + ++                +   +P  + +  P   
Sbjct: 9   KTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVPKDIQIFFPMAA 68

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTI 129
            +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P+     
Sbjct: 69  LLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMA 128

Query: 130 KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYA 189
           +   A+A    +    ++ L+ +  ++                     +   +   + YA
Sbjct: 129 RNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYAFNDQRRLQSVRYA 188

Query: 190 QSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS 248
            S   D + +   L+  +     +P     S     ++           + L  +  ++S
Sbjct: 189 ASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSIS 248

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPI 308
            L N          +    Y+     ++ Q L   +  L+++                  
Sbjct: 249 GLHN-YVKYLKSSGQDAGRYQFNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVT 307

Query: 309 FISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            IS    F V       +  +   P  +  L            LM++K
Sbjct: 308 GISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 355


>gi|84516314|ref|ZP_01003674.1| permease, YjgP/YjgQ family [Loktanella vestfoldensis SKA53]
 gi|84510010|gb|EAQ06467.1| permease, YjgP/YjgQ family [Loktanella vestfoldensis SKA53]
          Length = 364

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 99/337 (29%), Gaps = 10/337 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y  R    +FL        I   + ++++    +S+   L  LL ++   IP  + 
Sbjct: 2   ILHRYFARRFLMTFLGVLAVFFLIMLFLDLVEQSRRYASAEAGLRDLLTLTLLNIPRAIY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +    +   + R++EL++    G S +  I   L + +L+ I      N I 
Sbjct: 62  EILPLIMILAAIGLFLGLARSSELVVTRAAGRSALRAILAPLAVGLLIGIVAVAVLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRL----DDDLYIKISKYNPNNTLQGIFIVDS 178
                  +      +   +   +  +  +      D+   I+ +  N + T+       +
Sbjct: 122 AATSKEYEARGGALRGNASALSIGSSGLWLRQGASDEQTVIRAAGANLDGTVLTDVTFLT 181

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI---SKDISIMKFKSYTLQTESANS 235
                       + S  L   A +L + +V                              
Sbjct: 182 FTPDVGPARRVNAASAVLTDGAWVLRNAKVWTFGGTLTPEAGAVTQATMRIASTLTPDQI 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  +   +  L     +         + +    H  + Q +F +   +I       
Sbjct: 242 RDSFGTPSSIPIWQL-PAFIDRLREAGFSAQRHLVWLHSEIAQPVFLMAMVMIGASFTI- 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
               R  +    +  ++ ++F +++  ++     E  
Sbjct: 300 -RHQRGGRTGLAVMTAILLAFVIYFIRNFAQVLGENG 335


>gi|126439084|ref|YP_001058064.1| hypothetical protein BURPS668_1014 [Burkholderia pseudomallei 668]
 gi|126218577|gb|ABN82083.1| putative membrane protein [Burkholderia pseudomallei 668]
          Length = 365

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 128/365 (35%), Gaps = 22/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S   +   +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +    VLT   +++E+++   +G S   LIKP+   A  + I +     +  
Sbjct: 62  MILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +   ++  +   +  +    
Sbjct: 122 PWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSSDQAKVQNVFVTTTEH 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + ++    + I+L +G  +   P   +  IM+F+ Y ++ +S    + 
Sbjct: 182 GKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVSQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L NP   N            +EF  R    L  +   +++I  A     
Sbjct: 242 PTTTGTSTPDLLRNPTNQNL-----------AEFAWRAGLPLIAINLMILAIPLAY---Q 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSIFLLMI 354
             +R +   + +++ I        + +  ++E+      +    L++ +  I ++   + 
Sbjct: 288 NPRRGRTVNLVMAVLIYLTYSNLLNVVQSQMERGKIAFGLGLIGLHVIVAGIVALLFWLR 347

Query: 355 KKKYT 359
            +   
Sbjct: 348 VRNRP 352


>gi|253997951|ref|YP_003050014.1| permease [Methylovorus sp. SIP3-4]
 gi|253984630|gb|ACT49487.1| permease YjgP/YjgQ family protein [Methylovorus sp. SIP3-4]
          Length = 366

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/362 (11%), Positives = 118/362 (32%), Gaps = 15/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  +L+ +  + + + L +  I    ++   I + +  + + + +  + G+ +   LP
Sbjct: 2   LFKRSLLQELVGTAIGAFLVLFGIVIAQRVAYYIGVAAKGSLASDAINTLLGFSMLKFLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +     LT  +R++E+++  ++G      I+PVL  AI +   + +    + 
Sbjct: 62  MILSLTIFLAVLLTLTRWHRDSEMVVWFSSGMGLAGWIRPVLTFAIPVVAVIAVLSLFVT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   +   +   + +     + +   +F    +   +   +           I       
Sbjct: 122 PWATNKGSEFRDQLKSRDELASISPGVFKESRNADRVFFVESFDELGNVVKNIFVQSVQH 181

Query: 183 THKIYYA----QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                           D     +++  G  +   P + + S  +F+ Y+++ E       
Sbjct: 182 QRLGVVVASQGHRTVADNGDNFLVMEHGRRYEGKPNTAEFSTTEFERYSIRIEPNEVKEE 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      LL                  +E   RL   +   +  L++I  +     
Sbjct: 242 PPGTAALGSVELL----------KNHNPANNAELQWRLAIPISAFLLVLLAIPLSFVDNR 291

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +   +    +   I   +       + + + NP  + +  + +F +     +  ++  
Sbjct: 292 SGRSANMMLALLIYIIYNNMLSIVQAWLTQGKLNPV-VGLWPVHVFFLLLTIWMFYRRLL 350

Query: 359 TK 360
            +
Sbjct: 351 QR 352


>gi|209545529|ref|YP_002277758.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533206|gb|ACI53143.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 402

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 126/362 (34%), Gaps = 11/362 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y++  +   FL+S   ++    + ++L  +N+++S   +L I   +   L+P  L 
Sbjct: 18  TLDRYLIGQMLPPFLLSLGVVMTALLLERLLTLLNVLASDGGTLKIFAGLLADLVPHYLG 77

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +   +V+  M++N E+  +  +G S + + +P + +  +L +  F     I+
Sbjct: 78  LALPAAICVSVFSVVRRMSQNNEIDALMASGVSLLRIARPFVVMGAVLGLVGFSLYGFIQ 137

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  R   +Q    A  A    +L+  +F    D L +   +     T      +  +   
Sbjct: 138 PYARYDFRQALYIASHAGWTPHLQARMFAAPSDTLMLTADQVQGAGTRLRRVFIRDKSAG 197

Query: 183 THKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS---- 236
             +   A SG +    D   + L+       +  +     +     T +    +S     
Sbjct: 198 LERDITADSGRLLMTDDGTTVRLDLAHGVIVTDRNDGRPTLTTFDTTTRFFQTSSKAHAF 257

Query: 237 -TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                   +  +  L +   +             +E H RL + +      +++   A  
Sbjct: 258 RNRGNDERELTVLELRHGIRHRDLAIRRTH--LVAELHFRLARAMAIPFIPILACALA-- 313

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               RQR        ++S+          +     ++     +++          + +I 
Sbjct: 314 GMAKRQRHNTGLAIAAISLVGFDHALQLGLSLVASRSMSPWLVIWGPFAVFGFACVWLIL 373

Query: 356 KK 357
           ++
Sbjct: 374 RR 375


>gi|262373934|ref|ZP_06067211.1| permease [Acinetobacter junii SH205]
 gi|262310945|gb|EEY92032.1| permease [Acinetobacter junii SH205]
          Length = 366

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 111/354 (31%), Gaps = 14/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    Q+++     +       +LL I  Y +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVTALLTLIIMGGQLIKIFGRAAQGRLDAGVLLSIIAYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L K +L +  +  +          
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRNQLAKLLLPMTFVYLLVQSFLMFWGS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L     +   F  +    F           S       L+ IF     + +
Sbjct: 122 SSGIRAYESLMQTQAVRAGFDLVRPKEFISSGPYTIYAGSLSEDRKNLKDIFYYQKAERE 181

Query: 183 THKIYYAQSGSIDLDRQAI------ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                   +        A        L  G  +   P     +  +F+SY L+ E+    
Sbjct: 182 DKPDVMILAKEATRVEMANDTANVVDLVQGRRYEIYPNQPRYTQAEFQSYRLRLENDKDI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  +      L         +       RSE   R+      ++  L+++  ++  
Sbjct: 242 KFESDDVEALSMSKLW--------QKRDDSVVRSELGWRIFGPFVILVALLLAVALSEVS 293

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
               +  ++ P     +    +       I K E + +  P++ L     ++IF
Sbjct: 294 PRQGRYYRLIPAIFIFASLIVLMIAIKTRISKEELDIWAYPVVLLVYAIAAAIF 347


>gi|110643218|ref|YP_670948.1| putative permease [Escherichia coli 536]
 gi|47155053|emb|CAE85252.1| putative permease [Escherichia coli]
 gi|110344810|gb|ABG71047.1| putative permease [Escherichia coli 536]
          Length = 359

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 124/360 (34%), Gaps = 3/360 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSHYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + +      ++     S +   + +
Sbjct: 181 DLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +    YR    ++L Q +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQPSSDYRLALWEKLGQPILTLAMILLAVPFTFSAPRSP 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 300 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLMALSLVYWYDR 357


>gi|167618242|ref|ZP_02386873.1| permease, putative [Burkholderia thailandensis Bt4]
          Length = 365

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 126/364 (34%), Gaps = 20/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S   +   +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +    VLT   +++E+++   +G S   LIKP+   A  + I +     +  
Sbjct: 62  MILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTEH 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + ++    + I+L +G  +   P   +  IM+F+ Y ++ ++    + 
Sbjct: 182 GKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQNKQVVSQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L NP   N            +EF  R    L  +   +++I  A     
Sbjct: 242 PTTTGTSTPDLLRNPTNQNL-----------AEFAWRAGLPLIAINLMILAIPLAY---Q 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIKK 356
             +R +   + +++ I        + +  ++   + P+ + ++ L       +  L   +
Sbjct: 288 NPRRGRTVNLVMAVLIYLTYSNLLNVVQSQMERGKIPFGLGLIGLHAIIAGVVAFLFWLR 347

Query: 357 KYTK 360
              +
Sbjct: 348 VRNR 351


>gi|294673581|ref|YP_003574197.1| hypothetical protein PRU_0844 [Prevotella ruminicola 23]
 gi|294471872|gb|ADE81261.1| putative membrane protein [Prevotella ruminicola 23]
          Length = 393

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/363 (13%), Positives = 114/363 (31%), Gaps = 8/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI+     +++ S + I+ I+ V  + + +   S+    L  I+       +P 
Sbjct: 33  LKRLDRYIIAKFIGTYIFSIILIISISIVFDVNENLAKFSTYNAPLKAIVFDYYANFVPY 92

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +   G S   L++P +  A L++   F    
Sbjct: 93  FANLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLLRPYMISAALIAAVNFYLGG 152

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + PK         AK +                   +       +   T  G  +    
Sbjct: 153 YVIPKGNQVKMDFEAKYKNKERNLSASNVQLMVQPGVIAYLQQYDDVTKTGYGFSLDKFE 212

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK---FKSYTLQTESANSS 236
           + +      A     D    +      + ++   +      ++        +Q E  +  
Sbjct: 213 NKKLVSHMTASVIRYDSISDSRYHWKAQSYKIRTLKGLREEIESGAVIDTLIQMEPMDLV 272

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +      + L +            +  Y  E+HKR+       I  +I +      
Sbjct: 273 FSKGQQETLTSTELSDYISKQVERGSVNVVQYEVEYHKRIATSFASFILTMIGVSL---S 329

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +  R+      + I L++SFG +     I      N     +L  ++  +  + +     
Sbjct: 330 SRKRKGGMGMYLGIGLALSFG-YILLQTISATFAINADTPALLAAWIPNLLYVIIAYFCY 388

Query: 357 KYT 359
           +  
Sbjct: 389 RQA 391


>gi|157804262|ref|YP_001492811.1| hypothetical protein A1E_05575 [Rickettsia canadensis str. McKiel]
 gi|157785525|gb|ABV74026.1| hypothetical protein A1E_05575 [Rickettsia canadensis str. McKiel]
          Length = 360

 Score = 97.4 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 156/363 (42%), Gaps = 11/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +E Y ++ I    ++    +  I W+ Q+L+ + L       +     +   ++PT+
Sbjct: 1   MLLYEKYFIKNILPLLIVVTFSVTSIVWITQVLKLLYLF-DKGIKVMDFFSLIVLVLPTL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +++I+  +G   + L  P L++A+++ +  +   + 
Sbjct: 60  LFILLPVITVIAVIYIYNNLKVERQIIILQASGVHNVQLALPALYVALIVMLLAYYISST 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K   +  +     S +EE  F ++  D+ + I K +  N + G+ I D+R+
Sbjct: 120 IMPLSHINLKSRLSFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRN 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTES-----AN 234
                + +A SG++++   + I    +  R+    + +++ + F S  ++ ++       
Sbjct: 180 ADNLSVVFADSGTLNIYDNSPIFELNKGLRQEHDINGNLTQLTFNSLMIKLQNDNPLIPQ 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +    +AN+  +S LL P  +    +        +E H+R+   L+  +   +++    
Sbjct: 240 RTKHNKEANEYYISELLAPPHDLAVTKKI---KLIAEAHQRIIWPLYNFVLPFLALAVFL 296

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +    ++   +  +F +L++       F  + +   +N  +I   Y  L    +I L + 
Sbjct: 297 RYPYSKKTTFMPVLFSALTVLLVTSIHF-ILQNFASKNLNFIFACYSNLVIALTIGLYLF 355

Query: 355 KKK 357
            +K
Sbjct: 356 VRK 358


>gi|264678996|ref|YP_003278903.1| permease YjgP/YjgQ [Comamonas testosteroni CNB-2]
 gi|262209509|gb|ACY33607.1| permease YjgP/YjgQ [Comamonas testosteroni CNB-2]
          Length = 369

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 130/365 (35%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + ++ +   + +++ +      + S + ++ + G+ +   LP
Sbjct: 2   LFDSSIRKELARSFGATAVVLITVVMTMMLIRTLGQAYKGSVSPSDVMLVMGFTVLGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I    G    +L+KP+L  A  + +   +    + 
Sbjct: 62  TILGLSLFVAIVGSLSRMYRDSEMVIWFAAGQGLASLLKPLLRFAWPVILITAVLALGVL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     I+Q+  + Q       +    F        +     +  + +    +       
Sbjct: 122 PWSYQQIEQIKTQFQQRSDLDRIAPGEFQESAGGTRVFFVDKDSPSDMAASNVFVVSRDP 181

Query: 183 THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +   +  G+   +   ++ +IL DG+          + I +FK Y +Q ++ N   I 
Sbjct: 182 GKESVTSAKGAHLAVIKGQRMVILEDGQRMETRSDDGSVRITEFKEYGVQVDNDNPVAIE 241

Query: 240 LK-ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A       L+           +     RS    RL      + F ++ +      ++
Sbjct: 242 EMAARSMPTKDLI----------GKDEPIARSVLAWRLGLPFAALNFVILGLAI---SSV 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY----YIPILYLFLFCISSIFLLMI 354
             +      + I+L      +   +     +  N       + +L+  +  +S + LL  
Sbjct: 289 NPRAGNSSSLMIALFAFIVYYNLMTLGESWVSANKIGMWGILGLLHGSILIVSVLVLLAR 348

Query: 355 KKKYT 359
             +++
Sbjct: 349 HFRWS 353


>gi|157826432|ref|YP_001495496.1| putative permeases [Rickettsia bellii OSU 85-389]
 gi|157801736|gb|ABV78459.1| Putative permeases [Rickettsia bellii OSU 85-389]
          Length = 360

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 70/364 (19%), Positives = 160/364 (43%), Gaps = 13/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  + W+ Q+L+ + L       +   L +   ++PT+
Sbjct: 1   MLLYRKYFIKNILPLLIVITFSMTSLVWITQVLKLLYLF-DKGIKVMDFLSLIILVLPTL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G   + L  P L++A+++++  +   + 
Sbjct: 60  LFILLPIITVITIIYIYNNLKIERQLIILQTSGVGNLQLALPALYVALIVALLAYYISST 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +K   +  +     S +EE  F ++  D+ + I K +  N ++G+ I D+R+
Sbjct: 120 VMPLSHINLKSRLSFIKNNYISSMIEEKTFNKITKDITVYIDKKSTGNVMKGVIIFDNRN 179

Query: 181 TQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--- 235
           T    + +A SG  +I  +     L+ G        + +I+ + F S  ++ ++ N    
Sbjct: 180 TDNPSVVFANSGILNIYENDPIFELSKGSRQEYDI-NGNITQLTFDSLMIKLQNDNPLIS 238

Query: 236 --STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +T   +AN+  +  LL P  +     P       +E H+R+   L+  +   +++   
Sbjct: 239 QRTTHNKEANEYYIEELLEPPVD---LNPMKKIKLIAEAHQRIIWPLYNFVLPFLALAVF 295

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            K    ++   +  +F +LS+       F  + +   +N  +I   YL +F I SI L +
Sbjct: 296 LKYPYSKKTTFMPILFAALSVLIATSAHF-TLQNFASKNLAFITACYLNIFFILSIGLYL 354

Query: 354 IKKK 357
             +K
Sbjct: 355 FIRK 358


>gi|110833358|ref|YP_692217.1| hypothetical protein ABO_0497 [Alcanivorax borkumensis SK2]
 gi|110646469|emb|CAL15945.1| membrane protein, putative [Alcanivorax borkumensis SK2]
          Length = 353

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 99/357 (27%), Gaps = 5/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y  R +    L     IV +  +   +  +         +   L+      P  
Sbjct: 1   MKLLKRYFWRAVMIPTLAILFIIVGLDCLFGFIYELE-FLRGNYQVMEALQFILTTTPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    + T   L+ +  + EL +I   G S + +   VL   ++L I        
Sbjct: 60  FYEYMPMAILLGTLIGLSLLANSGELSVIRAAGVSTLKVSWLVLRPVLVLIILSIPLGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   + A+        +   + R   +     +               S  
Sbjct: 120 LTPYSEQVAQSNRSMAEGGGEALRSKYGYWHREGPEFIHINAVQPNGVLHGLTRYRFSDG 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +  Y          ++  L   +  R      +        +  +      S +VL
Sbjct: 180 QKLTETQYVNRAIYQ--GESWSLEGIQGTRLFADHVETYQKDQGEWQTELTPQLLSIVVL 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K ++  L  LL         +      Y   F ++L   L  +   LI+I          
Sbjct: 238 KPDNLALVKLL-EYTRYLKRQGLETADYMLSFWQKLFMPLATIGMVLIAISFVFGPLREV 296

Query: 301 QRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                    I   + F      F  +      +P    IL   L  +  I+LL   +
Sbjct: 297 TMGLRLTAGIVAGLIFHYGQQFFGQLSLVFHTDPLLAAILPPSLCLVLGIWLLQRVR 353


>gi|293610040|ref|ZP_06692341.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827272|gb|EFF85636.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325124205|gb|ADY83728.1| hypothetical protein BDGL_003142 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 356

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 114/356 (32%), Gaps = 4/356 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ +    +   + + +  +  +   L  +  +     +    L    +  P  L
Sbjct: 5   RIVAKYVTKTTALAMFGTTVVLSILQVLFTYLGELGEL-KPDYNAWQALVYVLWGAPRYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L S+  ++EL+++ + G S   ++  V+  A+LL I  F     +
Sbjct: 64  YEILPISALIGAVIGLGSLATSSELIVMRSVGVSLWRIVGWVMRSALLLIILSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      + + +   +A                      +       +Q   +   ++ 
Sbjct: 124 IPYTNEKAQSVKSHRSVAALGEVKGYWSREGQRFIYIDYANSQGNLRDIQ--VVDFDQNY 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
               +  AQ G    + Q  +    ++   +  +   +  + +S  L  +      + L 
Sbjct: 182 YLQSLINAQQGQFIKNGQWALKKAEQMDILAAGNAIKTDHEEQSLALALQPKYVHMVTLD 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             D + S L++       Y  ++ +TY+  F +++      +   L++          + 
Sbjct: 242 PEDLSPSQLISFMRYMDEY-SQVPKTYQLAFWQKVASPFSLIALVLVACSFIFGPLRQQS 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I + + +SF     F      +        +L   L    +   L+ + +
Sbjct: 301 MGFRLVIALFIGLSFYYLQDFLGYASLVYSPSPAWFVLVPILLMFGAGSYLLYRAR 356


>gi|121605071|ref|YP_982400.1| permease [Polaromonas naphthalenivorans CJ2]
 gi|120594040|gb|ABM37479.1| permease YjgP/YjgQ family protein [Polaromonas naphthalenivorans
           CJ2]
          Length = 379

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/380 (13%), Positives = 126/380 (33%), Gaps = 24/380 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST------ESLNILLKISG 54
           MK+    I   +  S  +  +  + + +   ++  +  +  +         +   L    
Sbjct: 1   MKTIRRLIYGEVLGSIALVAMGFLALFFFFDLVDELQYLGKNNGAGDSIYQIRHALLYVA 60

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
            LIP  L  + P    + +  V++ + +++E  I+  +G      +K +L+L        
Sbjct: 61  LLIPNHLYELLPISVLIGSIFVMSRLAQSSEYTILRTSGLGPWRALKLLLWLGAFFVALS 120

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEEN-LFFRLDDDLYIKISKYNPNNTLQGI 173
           F+  + I P      + + A+ Q  +T           ++  +  + +S+ +PNN + G+
Sbjct: 121 FLVGDYIAPASERAAQLMKARYQNKITVGQTGAWLKEKQVSSNFIVNVSELSPNNEMHGV 180

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------DISI 220
            I +               +      A  L +         +                + 
Sbjct: 181 RIYEFNHQGLIVSTTEAPVAAFSLNTAWQLRNATRTEFDVTTSAGGVNAPAQQAKVKRTD 240

Query: 221 MKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL 280
           +    +  +  +   S  +L+ +      L N    +     +  + Y  EF K++   L
Sbjct: 241 VASYRWPTEISTEMVSVALLRPDRMATLDLFN-YIRHLEANGQTSQRYEIEFWKKVFYPL 299

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPIL 339
             ++  ++++  A                + + ISF +    F YI +     P+     
Sbjct: 300 SCLVMVMLALPFAYLHFRSGSITSYVFAGVMIGISFFLLNNVFGYIGNLRNWQPWLAAAT 359

Query: 340 YLFLFCIS--SIFLLMIKKK 357
              L+     + F  ++ ++
Sbjct: 360 PGLLYMAISMAAFGWLVLRR 379


>gi|258544323|ref|ZP_05704557.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
 gi|258520403|gb|EEV89262.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
          Length = 352

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 116/361 (32%), Gaps = 16/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y++R     FL + L ++ I    ++   +   ++   +L+ +  + G      
Sbjct: 1   MPILYRYLIRETLAVFLATNLILLAILLSFRLSTLLAAAAAGNMALSAVWMLIGLQAVRF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P  F +     L  + R+ E+      G +     + +L  AI + + L      
Sbjct: 61  LVILMPLAFVLAAVMTLGRLYRDHEISAALACGIAPRHQTRALLACAIPIGLLLLTLSMS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+     + L  +AQ          N + RLDD   +          L+  FI     
Sbjct: 121 VLPRVYRGQEALRQQAQQEAGMILFTPNTYRRLDDGTIVHTGSI-EGGQLRDFFIARDEP 179

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              H +  A +G +  D Q    +L+DG     +          F           ++T+
Sbjct: 180 DGGHSLILAANGEMQGDEQQRHLLLHDGRRLAWNADHDPAHTTLFTYQHADLRLPGANTL 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              ++++          N P         + SE+  R +     V   + ++        
Sbjct: 240 AASSDNR--------LRNLPTSELGTSPEHLSEWQSR-SNP--AVALFIYALALPLLARS 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIE--QNPYYIPILYLFLFCISSIFLLMIKK 356
             ++ +   I  +             I   I   Q P      +L    ++ I +   + 
Sbjct: 289 QPRQGRYQKIVPAFIAFALYINLLDLITIAIRKQQIPPLPGSYWLHGAVLALILICWQRS 348

Query: 357 K 357
           +
Sbjct: 349 R 349


>gi|296115281|ref|ZP_06833921.1| putative permease [Gluconacetobacter hansenii ATCC 23769]
 gi|295978184|gb|EFG84922.1| putative permease [Gluconacetobacter hansenii ATCC 23769]
          Length = 406

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 135/364 (37%), Gaps = 13/364 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y+L+ +   F +S   ++    + ++L   NL++S+  S+   + +   L+P  L 
Sbjct: 12  TLDHYLLQQVTPPFSISLGVVMAALLLERLLALFNLLASNGSSMKTFVSLLTDLVPHYLG 71

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +   +V+  M++N E+  +  +G S   + +P + +  +L +  F     I+
Sbjct: 72  LALPAAMCVSVFSVIRRMSQNHEIDALMASGVSMFRIARPFIVVGAILGVLSFSLYGFIQ 131

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDT 181
           P  R   +     A  +    +L+ ++F     DL +   K +   + +  +FI D+ + 
Sbjct: 132 PYARYNYRSALYFASHSGWAPHLQSHMFAAPSHDLMLTAEKVDDAGSRMFKVFIRDNSNH 191

Query: 182 QTHKIYYAQSGSID----LDRQAIILNDGEVHRKSPISK------DISIMKFKSYTLQTE 231
              +   A+ G +      D+  + L DG +              D +   F  +    +
Sbjct: 192 DLTRYITARKGYLYIPNDEDKIRLDLIDGTIITDRHDKSPSVIHFDHTTELFSPHAQLDK 251

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                T      +  L  L     +             +E H RL + L      L++  
Sbjct: 252 LKAYRTRGQTERELTLPELYRGIRHGM--PGIKHSYLVAELHFRLARTLAIPFIPLLACA 309

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            A      ++   +    I+L            ++  +  +P  +  L   +F I  ++ 
Sbjct: 310 LAVMAKRQKRSLGLPIAAIALVGFDHTLQMGLSLVANVHMSPLLVIWLPTLVFGIGCVWA 369

Query: 352 LMIK 355
           L+ +
Sbjct: 370 LIWR 373


>gi|157826358|ref|YP_001494078.1| hypothetical protein A1C_06735 [Rickettsia akari str. Hartford]
 gi|157800316|gb|ABV75570.1| hypothetical protein A1C_06735 [Rickettsia akari str. Hartford]
          Length = 360

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 150/363 (41%), Gaps = 11/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++PT+
Sbjct: 1   MLLYRKYFIKNILPLLIVVTFSLTSIVWITQILKLLYLF-DKGIKVMDFFNLIVLVLPTL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G + + L  P L++A+++ +  +   + 
Sbjct: 60  LFILLPVITVIAIIYIYNNLKVERQLIILQASGVNNVQLALPALYVALIVMLLAYYISST 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K      +     S +EE  F ++  D+ + I K +  N + G+ I D+R+
Sbjct: 120 IMPLSHINLKSHLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRN 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESA-----N 234
                + +A SG++++     I    +  R+    + +++ + F S  ++ ++       
Sbjct: 180 ADNPSVVFAGSGTLNIYDNNPIFELNKGLRQEYDVNGNLTQLTFDSLMIKLQNDNHLASQ 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +    +AN+  +S LL P  +    +        +E H+R+   L+  +   +++    
Sbjct: 240 RTQHNKEANEYYISELLAPTHDLVITKKI---KLIAEAHQRIIWPLYNFVLPFLALAVFL 296

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +    ++     P+  S      V      + +   +N  +I   Y  L    +I L + 
Sbjct: 297 RYPYSKKT-TFMPVLFSTLTVLLVTSIHFILQNFASKNLDFIFACYSNLVIALTIGLYLF 355

Query: 355 KKK 357
            +K
Sbjct: 356 VRK 358


>gi|254468723|ref|ZP_05082129.1| permease YjgP/YjgQ [beta proteobacterium KB13]
 gi|207087533|gb|EDZ64816.1| permease YjgP/YjgQ [beta proteobacterium KB13]
          Length = 355

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 124/358 (34%), Gaps = 8/358 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI      +  +  + +VF+      LQ I  ++S    L+ ++      +P  L 
Sbjct: 2   KLAKYINFEFFINISLVAIGLVFLFAFFDFLQEIGNLNSGKYDLSKIIVFITLSMPGHLY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +     +  ++ N+EL+++  +G S + +   ++ +++   +  F+  N+I 
Sbjct: 62  EIIPLSCLIGAMFTVGQLSGNSELVVMRTSGMSILQIASSLIIVSLFFGVLTFMVGNLIT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q+   +      +  +  ++ +  ++     +     +           D  
Sbjct: 122 PVSEKNAQQIKISSTDGSVTTDFKSGVWMKDGNNFVNIENVLPDASLRNIHIYEFDNDFS 181

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
              I  A+ G    +     L   +         D+  +   ++    +    + +++  
Sbjct: 182 LRSIVDAEKGRY--ENGIWELEKIKQSFILDEGFDVKTLPSGTWKSMIKPEMMNVLLISP 239

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  ++  L N   N      +    Y   F +++ Q + P+I  L ++         R  
Sbjct: 240 DRMSIFDL-NDFINYLKKNNQKTSRYEVSFWEKIIQPVMPIIMILFAVPFGFF--QERSG 296

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMIKKK 357
            K   +F+ +          S + H    N   P    I+   +    +I+L+   ++
Sbjct: 297 GKYLKMFLGIIFGIIYQIMNSMMRHIGVLNDWEPIITAIIPSIVILGIAIYLMFYFER 354


>gi|307543949|ref|YP_003896428.1| permease [Halomonas elongata DSM 2581]
 gi|307215973|emb|CBV41243.1| K07091 [Halomonas elongata DSM 2581]
          Length = 354

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/354 (10%), Positives = 104/354 (29%), Gaps = 5/354 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YI R +  + L+  + ++ +  VI  +  +  V         +       +P    
Sbjct: 5   RLDRYIARNVLGAILVVQVVLLGLDLVITYINDLGDV-EGDYGALQVFFYLVMRLPWRFY 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +     L  M  + EL ++   G S   ++  V+   IL+   +      + 
Sbjct: 64  QYAPVGVLIGALIGLGGMASSNELTVMRAAGRSLARILWGVMKPVILVIAVVLFIAEFVS 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P             ++    + L E   ++ + D + +      +N +  +        +
Sbjct: 124 PST-EQYASAWRLEKMQGEGAVLTERGGWQREGDSFYRFGAIRVDNVVLDLTRYRFEGRE 182

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             +   A+           +L + ++ R      +++    + +  +   A  + ++ + 
Sbjct: 183 LREAVSARRAVWRDGG--WVLENVDITRFVDGRTEVTHQATRPWQTELTPAELNRLLRRV 240

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
             Q  S L   +      + +        F +++   L      L++             
Sbjct: 241 ETQAPSEL-WAHARYLEAQGQDATQPLLYFWQKMLMPLTMASLMLVAASFVFGPLRSVAA 299

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  +   + F            +        +L   L C +  F ++ + 
Sbjct: 300 GTRVFYGVITGLVFKYLQDLLGPASTVFGFSPAWAVLAPTLICAALGFYMLRRS 353


>gi|150007422|ref|YP_001302165.1| hypothetical protein BDI_0773 [Parabacteroides distasonis ATCC
           8503]
 gi|256839671|ref|ZP_05545180.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298375396|ref|ZP_06985353.1| membrane protein [Bacteroides sp. 3_1_19]
 gi|149935846|gb|ABR42543.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|256738601|gb|EEU51926.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267896|gb|EFI09552.1| membrane protein [Bacteroides sp. 3_1_19]
          Length = 361

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/353 (13%), Positives = 111/353 (31%), Gaps = 2/353 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ I+ V  I ++I+   +    L  I++      IP 
Sbjct: 5   LKRIDWYIIKQFLGTYVFAIALIISISVVFDINEKIDKFLNPDVPLKAIIVDYYLNFIPY 64

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +   +E++ +  +G S   L+ P    A +++I  FI   
Sbjct: 65  FANLFSPLFTFIAVIFFTSKLADRSEIIAMLASGMSFRRLMLPYAVSATIIAIVTFILNA 124

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I P      +       +        +N    ++  +      Y+  + +   F ++  
Sbjct: 125 YIIPPAN-ETRIDFQNKYIRNKKVDYVKNAQLEIEPGVIAYFDSYDARSNMGYRFSLEHF 183

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +                    + D  +     + + IS    K  TL    ++    V
Sbjct: 184 EDKKLISRLTAKSIKYDSLYQWTVIDYMIRDFDGMREHISQGSRKDTTLTIVPSDFLISV 243

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                     L              ++T++ E+HKR    +   I   I    + ++   
Sbjct: 244 NDCETMTTPELNTYINRQKKRGIGNIQTFQIEYHKRFATIMAAFILTSIGASLSSRKIKG 303

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                I                 S        +P     +   ++   +IFL 
Sbjct: 304 GMGMNIGIGLALSFSYILFMTVTSTFAINGYVSPAVAAWIPNIVYTFIAIFLY 356


>gi|73542369|ref|YP_296889.1| permease YjgP/YjgQ [Ralstonia eutropha JMP134]
 gi|72119782|gb|AAZ62045.1| permease YjgP/YjgQ [Ralstonia eutropha JMP134]
          Length = 373

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 121/363 (33%), Gaps = 17/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R +  +     L ++       +++ + L ++   S N +L + G      L 
Sbjct: 2   IFQQALRRELAYTAGAVFLVMLTFMLTSLVIRILGLAANGKASPNDVLILIGLATIGYLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   +++E+++  + G S   L+KPVL  A    +   +      
Sbjct: 62  ILLSATLFISTLIVLTRWYKDSEMVVWFSAGISLRDLVKPVLQFAAPFILLSLLLGLFAW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P           + +     S +    F    +  Y+   +    N      +  +    
Sbjct: 122 PWANQQSTLFRDRFEQRGVLSMIAAGRFIEPSNGNYVLFIEGIDGNMKYARNVFVANAEA 181

Query: 183 THKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                     S    +    + +++ +G  +  +P   D  I++F+ Y ++ ++    + 
Sbjct: 182 NKIGVALAHQSTFETMPNGDRMVVMENGRRYAGTPGQIDYRIVEFERYAVKVDNKPPESA 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +      +F L   P   N           E   R++  +    F +I+I  A    +
Sbjct: 242 NEQPPKSRDTFDLLRKPTLENLG---------ELLWRISLPILAFNFVMIAIPLAY---V 289

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFLLMIKKK 357
             +  +  P+  ++ I        +     +   +  +    +          LLM + +
Sbjct: 290 NPRLGRYTPLVFAVLIYLTYSNLINLAQSWVRSGSIPFWLAWWPIHAVAFLAALLMFRYR 349

Query: 358 YTK 360
             +
Sbjct: 350 QNR 352


>gi|83721258|ref|YP_441378.1| permease [Burkholderia thailandensis E264]
 gi|167580136|ref|ZP_02373010.1| permease, putative [Burkholderia thailandensis TXDOH]
 gi|257139949|ref|ZP_05588211.1| permease, putative [Burkholderia thailandensis E264]
 gi|83655083|gb|ABC39146.1| permease, putative [Burkholderia thailandensis E264]
          Length = 365

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 126/364 (34%), Gaps = 20/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S   +   +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +    VLT   +++E+++   +G S   LIKP+   A  + I +     +  
Sbjct: 62  MILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTEH 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + ++    + I+L +G  +   P   +  IM+F+ Y ++ +S    + 
Sbjct: 182 GKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQVVSQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L NP   N            +EF  R    L  +   +++I  A     
Sbjct: 242 PTTTGTSTPDLLRNPTNQNL-----------AEFAWRAGLPLIAINLMILAIPLAY---Q 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIKK 356
             +R +   + +++ I        + +  ++   + P+ + ++ L       +  L   +
Sbjct: 288 NPRRGRTVNLVMAVLIYLTYSNLLNVVQSQMERGKIPFGLGLIGLHAIIAGVVAFLFWLR 347

Query: 357 KYTK 360
              +
Sbjct: 348 VRNR 351


>gi|194290552|ref|YP_002006459.1| permease, yjgp/yjgq family [Cupriavidus taiwanensis LMG 19424]
 gi|193224387|emb|CAQ70398.1| putative permease, YjgP/YjgQ family [Cupriavidus taiwanensis LMG
           19424]
          Length = 376

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/361 (11%), Positives = 117/361 (32%), Gaps = 18/361 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +  + R +  +     L ++       +++ + + ++   S N +L + G      L 
Sbjct: 2   ILQQALRRELAYTAGAVFLVMLTFMLTSLVIRILGMAANGKASPNDVLMLIGLATIGYLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   +++E+++  + G S   L+KPVL  A    +   +      
Sbjct: 62  ILLSATLFISTLIVLTRWYKDSEMVVWFSAGISLRDLVKPVLQFAAPFIVLALLLGLFAW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P           + +     S +    F       Y+   +    +      +  +    
Sbjct: 122 PWANQQSALFRDRFEQRGVMSMIAAGRFIEPAKANYVLFIEGIDADMKHARNVFVANAEA 181

Query: 183 THKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                         ++    + +++ +G  +  +P   D  I++F+ Y ++ ++    + 
Sbjct: 182 DKIGVALAHQGQFETMPNGDRLVVMENGRRYSGTPGQIDYRIVEFERYAVKVDNKPPESE 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                          + +  +           E   R++  +    F +I+I  A    +
Sbjct: 242 ASLPP---------KSRDTIDLIRNPTRENLGELVWRISLPILAFNFVMIAIPLAY---V 289

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIKK 356
             +  +  P+  ++ I        +     +     P+++    + L       LL   +
Sbjct: 290 NPRLGRYTPLVFAVLIYLTYSNLINLSQSWVRNGSIPFWLAWWPIHLAVFLGALLLFRYR 349

Query: 357 K 357
           +
Sbjct: 350 Q 350


>gi|255013990|ref|ZP_05286116.1| hypothetical protein B2_08777 [Bacteroides sp. 2_1_7]
          Length = 361

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 111/353 (31%), Gaps = 2/353 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ I+ V  I ++I+   +    L  I++      IP 
Sbjct: 5   LKRIDWYIIKQFLGTYVFAIALIISISVVFDINEKIDKFLNPDVPLKAIIVDYYLNFIPY 64

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +   +E++ +  +G S   L+ P    A +++I  FI   
Sbjct: 65  FANLFSPLFTFIAVIFFTSKLADRSEIIAMLASGMSFRRLMLPYAVSATIIAIVTFILNA 124

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I P      +       +        +N    ++  +      Y+  + +   F ++  
Sbjct: 125 YIIPPAN-ETRIDFQNKYIRNKKVDYVKNAQLEIEPGVIAYFDSYDARSNMGYRFSLEHF 183

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +                    + D  +     + + I+    K  TL    ++    V
Sbjct: 184 EDKKLISRLTAKSIKYDSLYQWTVIDYMIRDFDGMREHITEGSRKDTTLTIVPSDFLISV 243

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                     L              ++T++ E+HKR    +   I   I    + ++   
Sbjct: 244 NDCETMTTPELNTYINRQKKRGIGNIQTFQIEYHKRFATIMAAFILTSIGASLSSRKIKG 303

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                I                 S        +P     +   ++   +IFL 
Sbjct: 304 GMGMNIGIGLALSFSYILFMTVTSTFAINGYVSPAVAAWIPNIVYTFIAIFLY 356


>gi|171914738|ref|ZP_02930208.1| permease YjgP/YjgQ family protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 576

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 53/369 (14%), Positives = 111/369 (30%), Gaps = 13/369 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  E Y++R   +  +   +    +  V+ +L  +     +  S   ++     LIP + 
Sbjct: 176 KILERYVMRSFLQPVMFCFIAFCTLWIVMDLLDNMQDFQENKISRAQIVMFYIKLIPFIF 235

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V P    + T   L  M+R  EL+ +  TG S   ++KP   +A   S+    +    
Sbjct: 236 VTVAPISLLLSTLYTLGRMSRTNELISMLGTGKSMFDVLKPFYVIACCASLLGMAANYHW 295

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      ++L    +  +  ++L   L +R  +D         P +             
Sbjct: 296 APVSAGNKEKLLENVKERIGKNFLVMGLMYRNQEDRRTWFVGQVPEDLRGDRMRRIEIRQ 355

Query: 182 QTHK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS--------IMKFKSYTL 228
           +  +      ++A+S     DR+      G                       +      
Sbjct: 356 EDDQGRLVKGWFAKSAFWWPDRKVWSFYSGVEVTYKNGQVVAMQNFDAGGGHPRIDFEGW 415

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                   +  L  +   +  L++    N  Y    L  Y +    R T     ++  L 
Sbjct: 416 TETPWILLSGTLVPDYLGVPDLISYIRGNSAYGQRKLAPYLTHLFYRFTFPWQCLVVVLF 475

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           +   +   +       +    I   +   +   F  +       P+    L   L     
Sbjct: 476 AAPLSVVFSRRGLVGGLSMAVIFFFVLMFMDNLFLNLGKSNVIPPFISVWLPHLLLGSIG 535

Query: 349 IFLLMIKKK 357
           I+L  ++ +
Sbjct: 536 IYLFKLRSQ 544


>gi|84500988|ref|ZP_00999223.1| permease, YjgP/YjgQ family protein [Oceanicola batsensis HTCC2597]
 gi|84391055|gb|EAQ03473.1| permease, YjgP/YjgQ family protein [Oceanicola batsensis HTCC2597]
          Length = 365

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 110/355 (30%), Gaps = 12/355 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   Y      R F+      + ++ +I + + +  +SS+  +L+ +L++     P  + 
Sbjct: 2   TLHYYFAWRFLRIFIGLLAVFLLMSMLIDVAEHLRRLSSTPATLSQVLRLVLLNAPEGIY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   + R +EL++    G S +  +   + +A  + +      N I 
Sbjct: 62  TILPLIMILATVALFLGLARTSELVVTRAAGRSALRSLVSPVIVAFAIGVIGVAMVNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-----DLYIKISKYNPNNTLQGIFIVD 177
                    L    Q               L          I+ ++ NP  T      + 
Sbjct: 122 AATSKRYAALLESYQSGGADVLSLSAEGLWLRQGGAEGQTVIRAARSNPQATELYDVTMI 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVH---RKSPISKDISIMKFKSYTLQTESAN 234
           +           ++    L   A  L+D  +    R +         +          A 
Sbjct: 182 AYAPDGGPEKRIEAARARLIAGAWELHDARIWPLARGTNPEARTERRESFEVPSSLTEAR 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 + +   +  +                 +   F   L + LF V   LI+     
Sbjct: 242 IRDTFGEPSAIPVWDM-PTYIGLLTEAGFSARRHAVWFQMELAKPLFLVAMVLIAAAF-- 298

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
               VR  K    +  ++ + F +++  +++   + +N      L  +   ++S+
Sbjct: 299 TMRHVRFGKTGIAVLSAIMLGFALYYVRNFVQ-ILGENGQIPVALAAWAPPVASV 352


>gi|323697852|ref|ZP_08109764.1| permease YjgP/YjgQ family protein [Desulfovibrio sp. ND132]
 gi|323457784|gb|EGB13649.1| permease YjgP/YjgQ family protein [Desulfovibrio desulfuricans
           ND132]
          Length = 391

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 131/364 (35%), Gaps = 10/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  I   + + F ++   ++ +  V ++LQ  +L  S    +  +L++  YL P  
Sbjct: 1   MKLLQRQIFLELCKLFGLTVSCLLGLILVGRMLQLRSLFLSQNIGVLNILQLFFYLTPFF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++TP    +        M+ + EL+ +  +G S   ++   +    L ++F F     
Sbjct: 61  LLLITPIATMLSVFLTFLRMSTDNELVALKASGVSLYRMLPAPVLFCSLCTLFAFFISFW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
                    K          +   L+  +F +   ++     + +     L+  F+ D  
Sbjct: 121 GLAWGMDMFKTKLYYFAKTHSKFALQPGVFNKEFPNITFYAHQVDNEKGELKFAFVRDDS 180

Query: 180 DTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              T  +  A    +  +    +  ++ ++G + R+S    +I   +  S  L      +
Sbjct: 181 IKGTSVVVVAPEAEVVSNPQEAKIHVVFHNGRIFRQSGDELNILKFRKYSIKLDLGKLLT 240

Query: 236 --STIVLKANDQNLSFLLNPNPNN---PNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
             +    KA D     L +   ++   P+          +EF+KRLT  L   I GL +I
Sbjct: 241 GFNFAEQKAKDMPFFRLRDIRKDHSLMPHENERFFRKVDTEFYKRLTLPLGCFILGLFAI 300

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             A     +RQ+  +        + + +F     +       P Y       LF   ++ 
Sbjct: 301 PIASIFRGLRQQYGLLLAMGLFMVYYTMFSIGVSMGESGTIPPEYGMWAPDILFIFVALA 360

Query: 351 LLMI 354
            L  
Sbjct: 361 GLRY 364


>gi|310778172|ref|YP_003966505.1| permease YjgP/YjgQ family protein [Ilyobacter polytropus DSM 2926]
 gi|309747495|gb|ADO82157.1| permease YjgP/YjgQ family protein [Ilyobacter polytropus DSM 2926]
          Length = 358

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 112/355 (31%), Gaps = 11/355 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI     +S ++S    + I  + Q+ + I  V+         +     L+P +
Sbjct: 1   MKKIDRYITMNFIKSIVLSLFGFINIFILSQLFKVIRYVTEGRFGGVDAIYYIISLLPDI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +     +  M  + E++ +  +G S   +I   + +A ++S  ++   + 
Sbjct: 61  IIKVMPLAVLLGGLMTINKMASSLEIIALKTSGISFKRIITFPILIAFIISCGVYYMNDK 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF---IVD 177
           I P+     +++       +      +  F R  D+        N   +         +D
Sbjct: 121 IYPESIKKSREIKRGGYEDMELPESRKKAFLRGKDNYVYYAESINRITSTAVNIEILELD 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           S   +  KI  A+ G    + +     +  V+     S   ++   +      E      
Sbjct: 181 SEFEKLTKIITAEKGIYHRENKLWKFENVTVNNLEKKSS-YTLPVMQDVRYDDEPERFLA 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +      +  + +                  E   R +      +   + +       
Sbjct: 240 PSVNPKLLTIKEMRSTLGAIKQTGG-NSREILMELGDRTSFSFASFVVSFLGLSLG---- 294

Query: 298 LVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             R  +    + +++S+  G  ++     +  I       P +  ++  I  + L
Sbjct: 295 -SRYVRGASAVSVAMSVGLGYSYYIVQASMEAISMGGVIHPFIGAWIPNILFLIL 348


>gi|209964085|ref|YP_002297000.1| predicted permease YjgP [Rhodospirillum centenum SW]
 gi|209957551|gb|ACI98187.1| predicted permease YjgP [Rhodospirillum centenum SW]
          Length = 414

 Score = 97.0 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 123/360 (34%), Gaps = 11/360 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YIL    +   +S + ++    + +IL+  +L+++      ++L+++  L+P  L
Sbjct: 21  RLIDRYILTETAKPLALSLVVVMLALLLERILRLFDLLANHGGPFQLVLRMAANLVPHYL 80

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +    V+       EL  + ++G S   + +P L+L   L +F  +    I
Sbjct: 81  GLALPAAFFISMFVVVARFGDENELDALQSSGLSVPRITRPFLWLGTGLMVFSVLLFGFI 140

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           +P  R   + +      A   + + ++ F      + I     +P         V     
Sbjct: 141 QPYSRYAYQAIHYAVVNAAWDATVPQSAFVDAGQGVTITADMVDPTGRNLERVFVQQLRD 200

Query: 182 QTHKIYYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSYTLQ----TESA 233
               +  A+SG + +          L++G   R  P    + +++F   TL      E+ 
Sbjct: 201 GEEWVTTAESGRLGVSDDRKRILLTLDNGVQVRTRPD-ATVEVVRFGRLTLDREFTLEAP 259

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                     +  L  L      +         T  +EFH RL + +   +  L+++   
Sbjct: 260 PFRPRGGSERELTLVELWQEM--HQPITLVPRGTLEAEFHARLVRAVSLPLMPLLALPMG 317

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                 R+   I      L +          +             +   +F +   +L  
Sbjct: 318 MAAKRARRGLGIALAAAILVLYHHSIQMGESLADIGRVPAALGIWVPFVVFALLCGWLFY 377


>gi|300774823|ref|ZP_07084686.1| YjgP/YjgQ family permease [Chryseobacterium gleum ATCC 35910]
 gi|300506638|gb|EFK37773.1| YjgP/YjgQ family permease [Chryseobacterium gleum ATCC 35910]
          Length = 370

 Score = 97.0 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 54/369 (14%), Positives = 124/369 (33%), Gaps = 15/369 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV-----SSSTESLNILL-KISG 54
           +K  + YI++    +F    + +  +  VI + Q+I  +           L   L     
Sbjct: 2   LKIVDRYIIKKYLGTFSFMLVLLSIVVLVIDVQQKIPRIENAKAIDPKLDLMYFLIHFYP 61

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
           + I  ++         +      + M  NTE++ I ++G S     KP L  +I + +  
Sbjct: 62  FWIINLVVTFLSILVFISVIYFTSRMANNTEIVAIISSGASFHRFSKPYLVTSIFIGLIA 121

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYL--EENLFFRLDDDLYIKISKYNPNNTLQG 172
            +  +++ P       +L A    A     +        +L    YI I  +N       
Sbjct: 122 LVVYHMVLPWANIKKNELEAYTYNAANKEKILGTAPASSQLSKTEYIFIDSWNKREKRGS 181

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPIS-KDISIMKFKSYTLQ 229
            F+    D      Y  ++  +  D+  +  +LN+      +  + + ++          
Sbjct: 182 SFVYQKYDKDRKMTYELKASEVYWDKAKKQFVLNNYLEKTINKDNSEKLNNGIELRKNYG 241

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                     L   ++    LL             L +Y +E H+R +  +  +I   ++
Sbjct: 242 HSPEELFPNELLGQNKTTPELLKFIEREKARGNSNLNSYLNELHQRTSMPVSIIILTFLA 301

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISS 348
           +      +  ++      + I +S++F   + F  +    E       + ++L       
Sbjct: 302 LSL---SSQKKRGGLGINLAIGISLAFIFVFSFEALKVVSENKSLSPALAMWLPNLVFLP 358

Query: 349 IFLLMIKKK 357
           + L +  K+
Sbjct: 359 LTLYLYIKR 367


>gi|295675785|ref|YP_003604309.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1002]
 gi|295435628|gb|ADG14798.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1002]
          Length = 365

 Score = 97.0 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 120/362 (33%), Gaps = 16/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ +     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++  ++G S    IKP+   A  + I +     +  
Sbjct: 62  IMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F        +   +    +      +  +    
Sbjct: 122 PWSNQQSKLIRARFQQRDEVSLLAPGQFRESPSTHRVFFIEKMSPDQGHVENVFVTSTEG 181

Query: 183 THKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                         +     + ++L +G  +   P   D  IM+F+ Y ++ +S      
Sbjct: 182 GKVNVVVSKNGHVETHKNGDRFVVLENGRRYDGEPGHPDFRIMEFERYGVKIQSQPVVNT 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRA 297
                   ++ L NP   N            +EF  R    L  +   L++I  A     
Sbjct: 242 PTTTGLPTMTLLRNPTNENL-----------AEFAWRAGLPLIAINLMLLAIPLAHQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    ++I          + IL++ +  I +    M  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQAWIEQGKMSFGIGLVILHVIVLGIVAFIFWMRVRN 350

Query: 358 YT 359
             
Sbjct: 351 RP 352


>gi|149201834|ref|ZP_01878808.1| permease, YjgP/YjgQ family protein [Roseovarius sp. TM1035]
 gi|149144882|gb|EDM32911.1| permease, YjgP/YjgQ family protein [Roseovarius sp. TM1035]
          Length = 378

 Score = 97.0 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 111/358 (31%), Gaps = 16/358 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  R    SF+   + ++ I  +I ++  +        +   +L I    +P    
Sbjct: 17  ILERYFGRRFFVSFMGVTITMLVIMGLIDLMDELGDFPE--LAFGQVLGIVLLKLPEAYY 74

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + +  +   + R++E++++  +G S +  +     +A+ + +      N + 
Sbjct: 75  EIIPLVMILASVALFLRLARSSEMVVLRASGRSALRGLLAPAAVALAIGLLGLAVGNPLV 134

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR------LDDDLYIKISKYNPNNTLQGIFIV 176
                    L               +              +       +  +TL G    
Sbjct: 135 AATAKRHHDLVNTYSGQTYSDLAIASEGLWLRQGGTAGQTVIYAARSSSDLSTLYGPSFY 194

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK---SYTLQTESA 233
           D           + S +  L+  A +L D ++   +      ++ + +   S        
Sbjct: 195 DFAPDGQPLRRISAS-TARLETGAWLLEDAKIWDLAENINPEAMARQEAQLSVPSDLTQD 253

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                        +  L     +           Y   F   L Q +F V   LI   AA
Sbjct: 254 RILDSFGSPEYIPIWEL-PKFIDQLEEAGFSARRYAIWFQSELAQPVFLVALVLI--SAA 310

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                 R       +  ++ + FG+ +  ++  H + +N     +L  +   ++S+F+
Sbjct: 311 LTMGHTRGANVGLSVLTAVLLGFGLHYVRNFA-HILGENGQLPILLAAWAPPVASLFI 367


>gi|312888277|ref|ZP_07747853.1| permease YjgP/YjgQ family protein [Mucilaginibacter paludis DSM
           18603]
 gi|311299111|gb|EFQ76204.1| permease YjgP/YjgQ family protein [Mucilaginibacter paludis DSM
           18603]
          Length = 362

 Score = 96.6 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 114/343 (33%), Gaps = 6/343 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K F+ YI++    +F+ +    + +  V  + ++++    +  SL  I+ +     IP  
Sbjct: 7   KIFDWYIIKKYLGTFVFTIAIFIVVIVVFDVSEKLDNFLKNNVSLKEIIFEYYAGSIPFY 66

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M++P    +        M   TE++ + ++G S    ++P    A L+ I   +++  
Sbjct: 67  IDMLSPLINFLAVIFFTAKMANQTEIVPVLSSGASFNRFLRPYFICASLIFIVSLLADIY 126

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +K     A + L      +      +       S  N + T     +     
Sbjct: 127 LIPFTN-KLKITFENAYVVLEDPTKSDVHIKLDEHTFVYMQSFDNASKTGYQFTLEKFDG 185

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +   A     D  ++   +   +    + + + +   + K   L    A+      
Sbjct: 186 DVLKQKLTANKIVYDSLKRVWSIQQFDTRYVNGLREKMVHGEKKDTVLDMVPADFVLHNN 245

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  +   L N           ++     E +KR    +   +  LI +      +   
Sbjct: 246 IYSAMSRKELDNNIKKEEYRGTGVINDMLIEKYKRFVHPMASFVLTLIGVSL---SSRKV 302

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +     P+ I   + F       + +    +     PI+ +F+
Sbjct: 303 RGGVGLPLGIGFFLCFAYIVVDQFAVVFSLKGG-LPPIIAVFI 344


>gi|15807418|ref|NP_296151.1| hypothetical protein DR_2431 [Deinococcus radiodurans R1]
 gi|6460246|gb|AAF11972.1|AE002073_2 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 420

 Score = 96.6 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 54/373 (14%), Positives = 135/373 (36%), Gaps = 26/373 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK FE Y+L  I    + +   ++ +  +  + + I  + +   S  ++ ++    +P  
Sbjct: 6   MKLFERYVLSEILPPLVGALAAVILLFLLAGLEEVIGPLLAKGASPLLVARLLALSVPEA 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P      T   L+ +  ++E+      G     L++PVL LA+ +++  F+    
Sbjct: 66  LSRALPIGLMFATLLGLSRLAADSEIKGALAGGVPVTRLLRPVLLLALGITVLSFLIGEG 125

Query: 121 IEPKCRSTIKQLSAKAQLALT-------FSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
           + PK  S   ++  +                  + L      +  I + +  P   L+ +
Sbjct: 126 LRPKAYSESLRVQQQIVFDNPRVTGLGQAGEGGQTLVLTDALNRAISVGEVRPGGELRDL 185

Query: 174 FIVDSRDTQTHKI-YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT-- 230
            IV  +  +  +    A+SG++      + L  G+        + ++++ F++  L    
Sbjct: 186 RIVAMQAGEAPREVITAESGTLVPGSNVLELRRGQRVTYQNA-RPVTVLSFENGRLPVQD 244

Query: 231 ------ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
                 +   SST      +  L  L +        +      + + FH+++ + L  + 
Sbjct: 245 VQANFAKDERSSTAQAGLVNLPLRELWDRTEAFRQQKVPAPAEFTA-FHRKIAEPLAALA 303

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--- 341
               ++  A       +         ++ ++F  +  +S     + +N    P++     
Sbjct: 304 LAFFAVSLAV---YSFRGSLNLGFTWAILLAFAYYATWSVF-RIMGENGGLPPVVAAYAP 359

Query: 342 -FLFCISSIFLLM 353
             +  ++ + LL 
Sbjct: 360 DLIAVVAGLALLW 372


>gi|220925666|ref|YP_002500968.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
           2060]
 gi|219950273|gb|ACL60665.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
           2060]
          Length = 362

 Score = 96.6 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/354 (11%), Positives = 98/354 (27%), Gaps = 12/354 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   YI   + R      L +  + + +  ++ +             + ++S    P++
Sbjct: 5   TTLGRYIAGRLLRMIAGVFLTVFALVYTLDFVELMRRAGETQGIGALTVARLSLLRTPSI 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + PF         L  ++R  EL++    G S    ++P +F+A+ +   +  + N 
Sbjct: 65  AEQIMPFAILFGAMGALLQLSRKLELVVARAAGISAWQFLQPGVFVALAVGALMVGAYNP 124

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL----DDDLYIKISKYNPNNTLQGIFIV 176
           +    +    ++ A+           ++L+ R        +    +      TL G+ + 
Sbjct: 125 MAAALKQHSTEIEARIFSRSNRGGSGKDLWIRQRSVDGQAIVRAETAIEGTTTLAGVSVF 184

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              D  T         +   D    +    +  R                      +   
Sbjct: 185 AFDDQGTFTQQIEARQATLHDGYWEL----QDARVLAKDSQPESYDTYLVASNLVPSQVR 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                 +      L +               YR +    L + +  V   L++   +   
Sbjct: 241 QRFTPPDSVPFWQLGD-TIARSERAGLDATRYRLQRAVLLARPMLFVAMVLVAASVSL-- 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
              R           ++  F ++     +           P+   F   + S+ 
Sbjct: 298 RFFRFGGIGRMALAGVAAGFALYVARQVMEGLGASGIVAAPVAAWFPAVVGSLL 351


>gi|329114705|ref|ZP_08243463.1| Permease YjgP/YjgQ Family Protein [Acetobacter pomorum DM001]
 gi|326695971|gb|EGE47654.1| Permease YjgP/YjgQ Family Protein [Acetobacter pomorum DM001]
          Length = 411

 Score = 96.6 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 128/361 (35%), Gaps = 10/361 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y++  +   FL++   ++    + ++L   NL+++    + I + +   L+P  L 
Sbjct: 34  TLDRYLIAQVMPPFLVALSVVMIALILERLLVLFNLLAAGNNHIGIFIGLLAALLPHYLG 93

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +    V+  M++N E+  I+++G S + + +P + L ++L I  F+    I+
Sbjct: 94  LAIPAALCVAVFTVIRRMSQNEEIDAINSSGLSLLRITRPYIQLGVILGILSFLLYGFIQ 153

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  R   +     A        L+  +F      L I   K + + +      +     Q
Sbjct: 154 PHARYDFRSTFYIASHTGWAPRLQPRMFASPSSQLTIVADKVSQSGSDLENVFIRDLSEQ 213

Query: 183 THKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES----ANS 235
             +   A++G I          I     V          S++ F   T         +  
Sbjct: 214 QERDITARNGHIRIGLDGETVEIDLTHGVIVTDKGDGVPSLVTFDHSTRYLTHASHVSPF 273

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            T      +     L+     +           RSE H R+ + L      L++   A  
Sbjct: 274 RTRGEDERELTSPELVGRLIRHDPSISRPH--MRSEVHFRMARSLTVPFIPLLAASLALM 331

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           R   R    +   FI + + F     F + +   ++    +      +F +    LL+ K
Sbjct: 332 RKRQRNNAGLPLAFI-IMVGFDHIIQFGHSMVATKKASLLLIWGPSLVFIVGCTLLLLYK 390

Query: 356 K 356
            
Sbjct: 391 S 391


>gi|90021020|ref|YP_526847.1| queuine tRNA-ribosyltransferase [Saccharophagus degradans 2-40]
 gi|89950620|gb|ABD80635.1| permease YjgP/YjgQ [Saccharophagus degradans 2-40]
          Length = 360

 Score = 96.6 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 127/353 (35%), Gaps = 25/353 (7%)

Query: 14  RSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMET 73
            S L   L ++ I    + +  +   ++      +LL +  Y +P  L ++ P    +  
Sbjct: 1   MSMLAVSLILLLIIISARFVTYLAEAAAGELDGGVLLTLMTYRLPAYLELILPLGLFLGI 60

Query: 74  TNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS 133
                 +   +E+ ++   G S+  LI   +    +++  + +    + P+     ++L 
Sbjct: 61  LMAYGRLYLESEMTVLHACGLSQGKLIGFTMVSTFVVACVVGVFSLYLGPEGVRASEKLL 120

Query: 134 AKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-----SRDTQTHKIYY 188
           A+ +    F  L+   F  LD    I  ++   ++  +   +               +  
Sbjct: 121 AEQRNRTDFETLKPARFHELDGGSGISYAESISDDKQKLQKVFMAKLAPDSVDDDLTVLT 180

Query: 189 AQSGSIDLDR----QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
           A+SG   +D     + ++L +G  +   P   +  +++FK+++      +   +  K   
Sbjct: 181 AESGETVVDAETGVKYLLLKNGRRYVGRPGEVNYKVVEFKTFSQILPEPDYEAVKPKKET 240

Query: 245 --QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              + + L                  R+    RL+  +  ++ GL+++          ++
Sbjct: 241 DGLSTAQLFE----------RDTLAARAALQWRLSLPVLVMVVGLLAVPL---SRTQPRQ 287

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIE-QNPYYIPILYLFLFCISSIFLLMI 354
            +   +  ++ +        +     IE  +  +I +L++       + LL+I
Sbjct: 288 GRYAKMLPAILLYIFYLVCVNGARGAIEDGSAPFIGLLWVVHGAFFCLALLLI 340


>gi|170743204|ref|YP_001771859.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
 gi|168197478|gb|ACA19425.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
          Length = 362

 Score = 96.6 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 100/353 (28%), Gaps = 12/353 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   YI     R      L +  + + +  ++ +     +   S   +  +S    P V 
Sbjct: 6   TLGRYIAARFLRMIAGVFLTVFALVYTLDFVELMRRAGEAPGASALTVAHLSLLRTPAVA 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L  ++R  EL++    G S    ++P + +A+ +   +  + N +
Sbjct: 66  EQIMPFAILFGAMGALLQLSRKLELVVARAAGISAWQFLQPGVLVAVGIGALMVGAYNPL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRL----DDDLYIKISKYNPNNTLQGIFIVD 177
               +    Q+ A+     T   L  +L+ R        +    +      +L G+ I  
Sbjct: 126 AASLKQRSTQVEARIFARSTKGGLSNDLWIRQRSVDGQAIVRASTAIEGTTSLAGVTIFT 185

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                          +   D    + +   + + S      + +           +    
Sbjct: 186 FDAQGAFGQQIEARRATLHDGYWELQDARVLTQDSGPESYDTYL----VASNLAPSQVRQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V   +      L +               YR +    L + +  V   L++   +    
Sbjct: 242 RVTPPDSVPFWQL-SETIARSERAGLDAARYRLQRAVLLARPMLFVAMVLVAASVSL--R 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             R           ++  F ++     +           P+   F   + S+ 
Sbjct: 299 FFRFGGIGRMALAGVAAGFALYVARQVMEGLGASGIVAAPVAAWFPAVVGSLL 351


>gi|124267133|ref|YP_001021137.1| hypothetical protein Mpe_A1944 [Methylibium petroleiphilum PM1]
 gi|124259908|gb|ABM94902.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 373

 Score = 96.6 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/374 (9%), Positives = 111/374 (29%), Gaps = 18/374 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++    +   +  +     +  + + + I  ++ ++ +      ++         +P  
Sbjct: 1   MRTVRRLLYADVLGAVTFVAVSFLSLFFFIDFVEELDDIGRGAYRVHHAALYCLLELPGR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    + T   +  + +++E  I+   G      +  +  + +  ++  F+  + 
Sbjct: 61  LYELLPIAVLIGTIYAMARLAQSSEFTILRTGGLGPGRALSLLAKIGLAFAVLTFVVGDY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----------DDDLYIKISKYNPNNT 169
           + P   +  + L +  + + +                       +    I I    P+  
Sbjct: 121 VGPYFDAKAQTLRSTLRGSASGGGNNSAWLKDRRAAAPGELPAGERIDSINIGNVGPDGL 180

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI---SIMKFKSY 226
           L  + I +  +        A   ++  D    +         +     +          +
Sbjct: 181 LDDVRIYEFSEEGQLLARVAAEHAVVEDGAWRLKKVRLTRWHAASGDGLPVDERRDELRW 240

Query: 227 TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
             +   +     V      +   L     ++ +   +  +    +F K+    L  ++  
Sbjct: 241 PTRLTPSVVGAAVSPLKSMSTVDLYR-YMSHLSQNEQAAQRQEIQFWKKALYPLACLVMV 299

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
            +++  A   A            I L ISF +    S  +  +     +I       F +
Sbjct: 300 GLALPFAYLHARAGGVSVKVFGGILLGISFVLLNNVSTHLGLLRDWTPWIAAAAPGAFYL 359

Query: 347 S---SIFLLMIKKK 357
               + F  +++ +
Sbjct: 360 LLSMAAFSWLVRYR 373


>gi|260433487|ref|ZP_05787458.1| permease, YjgP/YjgQ family [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417315|gb|EEX10574.1| permease, YjgP/YjgQ family [Silicibacter lacuscaerulensis ITI-1157]
          Length = 366

 Score = 96.6 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 115/355 (32%), Gaps = 11/355 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y  R   +SF++     + +  +I +++++     +  S   LL+++    P  + 
Sbjct: 2   ILDRYFARRFLQSFVVIGAIFLTLMILIDLIEQVRRFGDADLSFGQLLQLTLLNTPAAIS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   + R++EL++    G S I  +   + LA+ +        N I 
Sbjct: 62  EMLPLLMILSTIALFVGLARSSELVVTRAIGRSGIRALAAPVALALGIGALAVALLNPIA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-------LYIKISKYNPNNTLQGIFI 175
                  + LS + +   + +         L          ++   ++      L  + I
Sbjct: 122 AATSEKYETLSDQYRNGGSSTLSLSRDGLWLRQGSKDGQSVIHAAGTENGDTLKLIDVTI 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           +                +  LD Q ++    +       + +    ++ +  L T     
Sbjct: 182 ITFSPQGIPTRQIIAQSAELLDGQWLLRGVKDWSLSRAANPEFFSSEYDTLALPTTLTRE 241

Query: 236 STIVLKAND-QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
             +    +      + L     +        + Y      +L +  F V   LI      
Sbjct: 242 RILDRLGHQGLVSIYDLPQLIRDLAQAGFSTKQYEVWLQAQLARPFFLVSMVLIGAAF-- 299

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
               VR       +  ++ + F +++  ++    + +N     +L  +    ++I
Sbjct: 300 TMRHVRFGGTGIAVLTAVLLGFAIYFVRNFAQ-ILGENGQLPVMLAAWAPPFAAI 353


>gi|262280664|ref|ZP_06058447.1| permease YjgP/YjgQ family protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257564|gb|EEY76299.1| permease YjgP/YjgQ family protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 356

 Score = 96.6 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 113/356 (31%), Gaps = 4/356 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ +    +   + + +  +  +   L  +  +     +    L    +  P  L
Sbjct: 5   RIVAKYVTKTTALAMFGTTVVLSILQVLFTYLGELGELKPD-YNAWQALIYVLWGAPRYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L S+  ++EL+++ + G S   ++  V+  A+LL I  F     +
Sbjct: 64  YEILPISALIGAVIGLGSLATSSELIVMRSAGISLWRIVGWVMRSALLLIILSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      + + +   +A                      +       +Q   +   ++ 
Sbjct: 124 IPYTNEKAQSVKSHRSVAALGEVKGYWSREGQRFIYIDYANSQGNLKDIQ--VVDFDQNY 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
               +  AQ G    + Q  +    ++   +  +   +    +S  L  +      + L 
Sbjct: 182 YLQSLINAQQGQFVKNGQWALKKAEQMDILAAGNAIKTDHDEQSLALALQPKYVHMVTLD 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             D + S L++       Y  ++ +TY+  F +++      +   L++          + 
Sbjct: 242 PEDLSPSQLISFMRYMDEY-SQVPKTYQLAFWQKVASPFSLIALVLVACSFIFGPLRQQS 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I + + +SF     F      +        +L   L    +   L+ + +
Sbjct: 301 MGFRLVIALFIGLSFYYLQDFLGYASLVYSPSPAWFVLVPILLMFGAGSYLLYRAR 356


>gi|152981500|ref|YP_001354149.1| hypothetical protein mma_2459 [Janthinobacterium sp. Marseille]
 gi|151281577|gb|ABR89987.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 382

 Score = 96.6 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/382 (13%), Positives = 111/382 (29%), Gaps = 26/382 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y    IGRS L   +  + +     ++  +  V      +          +P  
Sbjct: 1   MKILQKYFSLEIGRSVLFVLIAFLALFAFFDLVGELKSVGHGGYKIQHAFLYVVLEMPGY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + T   L+     +E  I+  +  S   +   +L + ++ ++  F+    
Sbjct: 61  VYELMPIAALIGTIWALSQFAARSEFTIMRASSMSTAMVGAILLKIGVVFALITFVFGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----------LYIKISKYNPNNT 169
           + P   +  +++   +Q           L+ +                ++ + +  P+  
Sbjct: 121 VVPITSNMAERIRVNSQGGALSQEFRSGLWTKDVIRSNGQEGEVLGSRFVNVRELRPDGK 180

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS-------------K 216
           L  + I +               +         LNDG V                     
Sbjct: 181 LMNLKIYEFNRNFHLTSLITAGSADYAGANTWTLNDGTVAAFGESKLQGATTATDITTAI 240

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
             S  K +S   +      S         +   L+N      +        Y     K++
Sbjct: 241 STSKFKTQSLVSEMTPEILSVGFTDPATMSAIALVN-YTQYLSENNRDTVRYEIALWKKV 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYY 335
                  +   +++  A                I + +SF  +   FS++       P+ 
Sbjct: 300 VYPFAVFVMMALALPFAYLHFRSGGVSLKIFTGIMIGVSFQLINSLFSHLGLLNTWPPFA 359

Query: 336 IPILYLFLFCISSIFLLMIKKK 357
             IL   LF   ++  LM  ++
Sbjct: 360 TAILPSLLFLTVAVGALMWVER 381


>gi|241663807|ref|YP_002982167.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12D]
 gi|240865834|gb|ACS63495.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12D]
          Length = 397

 Score = 96.6 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/396 (11%), Positives = 112/396 (28%), Gaps = 43/396 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +E Y  R I   F+     ++ +     +L  +  V     +L           PT 
Sbjct: 3   MPVYEKYFARQIYGVFVFILFAVLALFIFFDMLGELGSVVGRYTTLVAFFH-VMLQAPTR 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + M   +E  I    G      +  +  +A+ L++  +I    
Sbjct: 62  VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALVTYIFGEF 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----------LYIKISKYNPNNT 169
           I PK     +++  +A  A   +     ++ +                ++ +    P+ +
Sbjct: 122 IGPKAEEYAQKVRLEALGATVSAGFRSGVWVKDRGPAKADGTGGEVTRFVNVGALQPDQS 181

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS----------------- 212
           ++G+ I +               +     Q   LND    R                   
Sbjct: 182 IKGLRIYEFDSDYRLSSIRVAEQARYQGHQNWQLNDVTETRFVEFPRKPGTVAPQDTVQA 241

Query: 213 ----------PISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP 262
                         + + +  +    +      S +++  +      L      +     
Sbjct: 242 VPGAPDALAPDFRGEQTKLPHQEMRSELTPQILSVLMVTPDRMATLDLFQ-YIRHLRDNK 300

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
           +  + Y     K++      ++   +++  A      R       +F  + +        
Sbjct: 301 QDTQRYEIALWKKVVYPFTVLVMMALALPFAYL--HARAGAVGLKVFGGIMLGLSFQLVN 358

Query: 323 SYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
           +   H    N  +  I    +     + L +I  ++
Sbjct: 359 NLFSHVGLLN-TWPAIFTAIVPGALYLALALISLRW 393


>gi|251771422|gb|EES52001.1| permease YjgP/YjgQ family protein [Leptospirillum
           ferrodiazotrophum]
          Length = 361

 Score = 96.6 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 118/354 (33%), Gaps = 7/354 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    +I+    + + +S + +  I  VI  +++I    +     +++ +   +    V
Sbjct: 1   MKILTRHIMGEYIKIYFLSLVSLEAIYLVIDSVEKIKSFLAHHAPWSLMGEFFAWRSIEV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    + T   L   ++N E+  I   G S      P++    LLS+   +    
Sbjct: 61  GFRVIPMSALLATILALGIASKNHEITAIRAAGISLGKATFPIVLFGALLSLIELLLNLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFS--YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           + P    T   +  +     +     +  N++FR       +I+K     T      +  
Sbjct: 121 VVPHAYQTTDVIMEERINQGSGWSGEVRRNVWFRHGSREIFRIAKIEQGGTRLDTVTIYH 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +  +    +  ++ ++  +    + +DG           +S   F +     +   +   
Sbjct: 181 KSPKADLQWTIEAKTLLYENGGWVFHDGV-RTLFHKDGTLSSESFATLPFPLDRRPADFF 239

Query: 239 VLKANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + K +  +L++  L+   +         + +       L       +  L +I       
Sbjct: 240 IRKTHLSHLTYAELSRTIDLLKANGLPHKNFTVLRDGVLAFPAASFLMVLFAIPFGI--R 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             RQ        ++L +S   +W    +   + +     P+L  +   +  + +
Sbjct: 298 EGRQVGIARGFGVALMLS-LSYWTLYSMGLALGRGGVIPPLLAAWFANLVVLAV 350


>gi|302391952|ref|YP_003827772.1| permease YjgP/YjgQ family protein [Acetohalobium arabaticum DSM
           5501]
 gi|302204029|gb|ADL12707.1| permease YjgP/YjgQ family protein [Acetohalobium arabaticum DSM
           5501]
          Length = 372

 Score = 96.2 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 140/364 (38%), Gaps = 10/364 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YIL+ +   FL+  + I  I     + +  +L+     +L+ +LK+  Y +PT++
Sbjct: 5   KLIDKYILKEVTILFLIGLIIISIIMLSSFLFELTDLIIIRKVALSSVLKLLIYKLPTII 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P      T   L  ++++ E+  +     S   LI P++ L +++S   ++    +
Sbjct: 65  VRAIPMSVLFATIIGLGRLSKDNEITALRMGSISIYRLILPLIILGLIISGGNYLLNEKV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRD 180
            P      + +  +  L      ++EN+FF+   +    I KYN   +T++ I I +   
Sbjct: 125 VPFSNKRFQVIMNETVLKSRMPEIKENIFFKGTRNKLFYIGKYNESQSTVKDIVIYELDS 184

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q +      +           LN+G +++ +     I+  KFK  T+  ++  +     
Sbjct: 185 KQDYPNIIMANKGRVYKDNKWELNEGYIYKYNNDGNLINKDKFKDITVGFKANINRFADQ 244

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           ++  +     L               +   E+H +       +IF L+  + + K    +
Sbjct: 245 QSPSEMSIKELKEEIEFLKKIGADPNSLLVEYHLKFAMPFSALIFILVGSILSIKGKNSK 304

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLLMIKK 356
               +  I I        ++    +   + +N  + P++  +L    F I    L  I  
Sbjct: 305 GVNILFTIIII-----FFYYLLLSLSRSLGRNEVFSPLVAAWLTNFIFIILGAILFYIDN 359

Query: 357 KYTK 360
            + K
Sbjct: 360 PFRK 363


>gi|331001131|ref|ZP_08324762.1| permease, YjgP/YjgQ family [Parasutterella excrementihominis YIT
           11859]
 gi|329569436|gb|EGG51214.1| permease, YjgP/YjgQ family [Parasutterella excrementihominis YIT
           11859]
          Length = 378

 Score = 96.2 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/379 (12%), Positives = 123/379 (32%), Gaps = 24/379 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK     I   I +S L   L +V +     ++ +   + +S  S+     ++  ++PT 
Sbjct: 1   MKIVSRMIFAQIMKSSLFVLLTLVALFAFFDLIGQSGNIGTS-YSMGQAFLLTALILPTR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    + +   L+ +   ++  ++  +G         +L   I+L I  ++  N+
Sbjct: 60  CYEVLPIAVMLGSIFTLSRLASTSQFTVLRVSGIGPWRFCGMLLMPGIVLVICAYLLGNL 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL----------YIKISKYNPNNTL 170
           + P  +   K+       +       ++  +  D             ++ + +  P    
Sbjct: 120 VAPPAQRLAKEFKLDISGSAFTGKELDSGIWVRDVQRNEAGEPKKISFVNVQRLRPGEAA 179

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDG----------EVHRKSPISKDISI 220
               I                     +++  +L+D           E   ++    +  +
Sbjct: 180 YDWVIYVFDRPDHLTSIVTAKSGTYSEQEGWVLHDVVEETVPTLPKESREQTQARVERKV 239

Query: 221 MKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL 280
           MK   +    +      +++K  D +L  L +          +  + + + F  +    L
Sbjct: 240 MKSMVWGKSLDGNIFGLLMIKPEDMSLQEL-HYYIEYLKENGQTYKRFDTAFWSKAFYPL 298

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
             ++  L+S+  A + A            I + I +         +  ++  P  I  + 
Sbjct: 299 AILVMLLLSMPFAYQNARAGGMAIKIFCGIMIGIFYYALNNLFAFMSALDSVPSIISAIL 358

Query: 341 LFLF--CISSIFLLMIKKK 357
             +     + I +  ++++
Sbjct: 359 PSVMMTLAAIIAMWYVERR 377


>gi|300718541|ref|YP_003743344.1| permease [Erwinia billingiae Eb661]
 gi|299064377|emb|CAX61497.1| putative permease [Erwinia billingiae Eb661]
          Length = 366

 Score = 96.2 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 122/356 (34%), Gaps = 17/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLTLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + L +  +I   ++   + 
Sbjct: 62  LILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMVLMLFTAIVAAVNVAWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +++  A+     + L    F +  D   +   +    N    +F+   R   
Sbjct: 122 PWSSRYQSEVTQNAKANPGAAALAAGQFQQSGDGQSVMFIENVKGNNFGNVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G +       Q + L+ G     + + +D  I  F++Y       +   
Sbjct: 182 NARPSVVLADKGHMTQGPDGSQIVTLDKGTRFEGTAMLRDFRITDFENYQAIVGHQDVVL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A   +   L                 +RSEFH RLT     ++  L+ +  +    
Sbjct: 242 DPNDAEQMDFKTL----------AQSDKPEFRSEFHWRLTLVFSVLVMALMVVPLSVVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              +   + P  +   I F +         K   +P     +++       + +L+
Sbjct: 292 RQGRVLSMLPAMLLYLIFFLLQSSLRSSGQKARLDPALW--MWVVNLSYLGLAVLL 345


>gi|330752158|emb|CBL87118.1| predicted permease YjgP/YjgQ, transmembrane [uncultured
           Flavobacteria bacterium]
          Length = 359

 Score = 96.2 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 114/360 (31%), Gaps = 8/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           M   + YI      SF +    ++ IA V  I Q+++   +    ++ I++      +  
Sbjct: 1   MNRLDRYIFFRFLGSFFLFLGLVMMIAVVFDISQKVDNFINKNADISTIIIDYYVNFLAF 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                +     + T  V   M R++E++     G S   LIKP L  A++L I      +
Sbjct: 61  YGTTFSSLIVFLSTIFVTGRMARDSEIVAALTGGVSFPRLIKPFLLGALVLFIGNSTLSH 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + PK                            L D      +                 
Sbjct: 121 FVIPKTNIARIHFEDTYVQDKIIKRPINIHRQVLPDHYIYIETWSPERLGGYHFSYERFE 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTI 238
           + +  +   A     D  ++   +++  +          +   +    +   +    S  
Sbjct: 181 NDRMIEKLMADFVRYDTSQKQWQVDNWTLRTWLKSGEMKLESGRRLDTSFAFDPTTISPD 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           +   +      LL           E + ++  E+HKR+       I   I++V     + 
Sbjct: 241 LRSTSTMTSPQLLKYLKKERISGSEAITSHEMEWHKRIAYPFSVFILVFIAVVL---SSE 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIKK 356
            R+      I I L I+  ++  F  +   +   P +   + ++L  F  + +  ++  +
Sbjct: 298 KRRGGIGGQIAIGLLIAV-IYIFFMQLGGVLVSIPIFSAFMAIWLPNFLFTILGFVLYIR 356


>gi|262382043|ref|ZP_06075181.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262297220|gb|EEY85150.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 361

 Score = 96.2 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 111/353 (31%), Gaps = 2/353 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ I+ V  I ++I+   +    L  I++      IP 
Sbjct: 5   LKRIDWYIIKQFLGTYVFAIALIISISVVFDINEKIDKFLNPDVPLKAIIVDYYLNFIPY 64

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +   +E++ +  +G S   L+ P    A +++I  FI   
Sbjct: 65  FANLFSPLFTFIAVIFFTSKLADRSEIIAMLASGMSFRRLMLPYAVSATIIAIVTFILNA 124

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I P      +       +        +N    ++  +      Y+  + +   F ++  
Sbjct: 125 YIIPPAN-ETRIDFQNKYIRNKKVDYVKNAQLEIEPGIIAYFDSYDARSNMGYRFSLEHF 183

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +                    + D  +     + + I+    K  TL    ++    V
Sbjct: 184 EDKKLISRLTAKSIKYDSLYQWTVIDYMIRDFDGMREHITEGSRKDTTLTIVPSDFLISV 243

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                     L              ++T++ E+HKR    +   I   I    + ++   
Sbjct: 244 NDCETMTTPELNTYINRQKKRGIGNIQTFQIEYHKRFATIMAAFILTSIGASLSSRKIKG 303

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                I                 S        +P     +   ++   +IFL 
Sbjct: 304 GMGMNIGIGLALSFSYILFMTVTSTFAINGYVSPAVAAWIPNIVYTFIAIFLY 356


>gi|299771879|ref|YP_003733905.1| hypothetical protein AOLE_18250 [Acinetobacter sp. DR1]
 gi|298701967|gb|ADI92532.1| hypothetical protein AOLE_18250 [Acinetobacter sp. DR1]
          Length = 356

 Score = 96.2 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 113/356 (31%), Gaps = 4/356 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ +    +   + + +  +  +   L  +  +     +    L    +  P  L
Sbjct: 5   RIVAKYVTKTTALAMFGTTVVLSILQILFTYLGELGEL-KPDYNAWQALIYVLWGAPRYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L S+  ++EL+++ + G S   ++  V+  A+LL I  F     +
Sbjct: 64  YEILPISALIGAVIGLGSLATSSELIVMRSAGISLWRIVGWVMRSALLLIILSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P        + +   +A                      +       +Q   +   ++ 
Sbjct: 124 IPYTNEKAASVKSHRSVAALGEVKGYWSREGQRFIYIDYANSQGNLKDIQ--VVDFDQNY 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
               +  AQ G    D Q  +    ++   +  +   +    +S +L  +      + L 
Sbjct: 182 YLQSLINAQQGQFVKDGQWALKKAQQMDILAAGNAIKTDHDEQSLSLALQPKYVHMVTLD 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             D + S L++       Y  ++ +TY+  F +++      +   L++          + 
Sbjct: 242 PEDLSPSQLISFMRYMDEY-SQVPKTYQLAFWQKVASPFSLIALVLVACSFIFGPLRQQS 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I + + +SF     F      +        +L   L    +   L+ + +
Sbjct: 301 MGFRLVIALFIGLSFYYLQDFLGYASLVYAPSPAWFVLVPILLMFGAGSYLLYRAR 356


>gi|289209274|ref|YP_003461340.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. K90mix]
 gi|288944905|gb|ADC72604.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. K90mix]
          Length = 386

 Score = 96.2 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 119/367 (32%), Gaps = 18/367 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++  E +I R +  +     + ++ +     + + +  V+     ++ L  +  +     
Sbjct: 18  LRRAERFIARELWLTQAAVSVVLLLVIIGGVLARVLRDVAEGRLPVDFLPGMVAFGAFKG 77

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +    V   M R++E+  +  +G S   L + + ++A   +I L +   +
Sbjct: 78  IVFLWPVALFLAFMLVFGRMQRDSEMTALQASGMSFAALYRALFWVAAPAAILLLVLMTM 137

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+  + I QL   A+       +    F R      +  ++    +    + +   R+
Sbjct: 138 VVPRTEAQIDQLRDLAEQRSDLVGIAPGRFLRSRVGDQVFFAERMSADREALLEVFIYRE 197

Query: 181 TQTHKIYYAQSGSIDL----DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                       ++          ++L +G  +   P +    +++F+    Q    +  
Sbjct: 198 VDGEAQITVAERAVPDPGAEGSGFLLLENGYRYVGEPGTASFRMLEFERLRTQITEPDPG 257

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T     N Q    L                  R+E   RL   L  ++     ++A    
Sbjct: 258 TRRASLNAQPTPALW---------AQRDDPEARAELEWRLAMPLSILVLA---LLALPLA 305

Query: 297 ALVRQRKKIHPIFISLSISFGV--FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            +  +  +   I  ++ +      F           + P  + + +     +    +L  
Sbjct: 306 QVPPRTGRYARIPAAIGVYVLYANFLILGQGQLADGRTPLALGLWWAHGLMLVLWVVLAW 365

Query: 355 KKKYTKI 361
            K   ++
Sbjct: 366 HKGLLRL 372


>gi|226227978|ref|YP_002762084.1| hypothetical protein GAU_2572 [Gemmatimonas aurantiaca T-27]
 gi|226091169|dbj|BAH39614.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 578

 Score = 96.2 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 94/286 (32%), Gaps = 12/286 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y++R      + +   +  +  +  + +++  ++      + + +     +P  
Sbjct: 1   MKLLTRYVIREHIGPLVFALSALTSLLMLQYVARQLANLAGKGLPWSAIGQFFVLSLPFT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    + T      M    E+     +G    T++ PVLF A+LLS+F+    + 
Sbjct: 61  VAMTLPMAVLVATLYAFGRMAAEHEITAFKASGVRVRTMMLPVLFCALLLSLFMVWFNDQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI-SKYNPNNTLQGIFIVDSR 179
           + P     +  L            L +     + D  ++++       N +  + I D  
Sbjct: 121 VLPAANHRLSMLQRDIARTKPTLALRDQALNAITDQFFMRVARTDAETNRMYDVVIYDLS 180

Query: 180 DTQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPIS-KDISIMKFKSYTLQT---- 230
             Q  K  YA SG      +     + L DG          +      F+S  ++     
Sbjct: 181 RGQERKTIYADSGVFAPAPNNRDLQLTLYDGFAQEFVRGDPRQFQRSYFQSQVIRQAGMT 240

Query: 231 --ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHK 274
               A++S       +  +  L      +      +   Y S   +
Sbjct: 241 QGFEASNSDGYKGDREMTVCELHRKYIADAVEVERVRLEYVSNAQQ 286



 Score = 57.7 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
           N +      + E L++   E HK+       ++F L     A       +      I +S
Sbjct: 436 NASGTQLVAQREGLDSLAVEIHKKFALSFACLVFVLFGPPIAL---RFPRGGVGVTIGVS 492

Query: 312 LSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIKK 356
           + I FG+++        +         + +++     + + L+M+ +
Sbjct: 493 I-IVFGLYYVCLMGGEALADKGRLPAYVAMWIANVIFTLVALVMLWR 538


>gi|257454352|ref|ZP_05619615.1| permease YjgP/YjgQ family protein [Enhydrobacter aerosaccus SK60]
 gi|257448255|gb|EEV23235.1| permease YjgP/YjgQ family protein [Enhydrobacter aerosaccus SK60]
          Length = 385

 Score = 96.2 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 59/366 (16%), Positives = 123/366 (33%), Gaps = 23/366 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + +  +  +  LF++ +    ++++   + +     + +L  I GY IPT L 
Sbjct: 10  ILRRYMTQQVAANTAIVLLFLMALMLGGRLIRYFGIAAEGRLDVGLLFAIIGYNIPTFLE 69

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    VL  M  + E+ ++  +G SR  L + ++ L   L IF      + +
Sbjct: 70  LILPLSFFIALMLVLGRMYVDQEMSVLFASGISRGRLTRLMIPLITGLFIFQMGISLLAK 129

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT- 181
           P   S  KQ+     L      +    F    +              L+ +++V  +   
Sbjct: 130 PWGLSNSKQIWQTQSLGSLLDLVRPKTFISSGNYHLYVDEFNKEKRELKNLYVVQQQTDK 189

Query: 182 -----QTHKIYYAQSGS-----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
                +   I  A                + L  G  +     +   +   F+ Y +  E
Sbjct: 190 SGKIAKNDVIITATRAYQVPSKDTDSSMQLDLFQGRRYELGTNNAKYNQASFEKYRITLE 249

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
              S TI     +   +  L  +   P          ++E   R T     +I  +++  
Sbjct: 250 KPASETITETNVETQTTAKLLAHTQKP--------EVKAELGYRFTMPWLIIIAAMLATP 301

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            A  R    +  ++ P  +  +            I K   + Y     Y++L      F 
Sbjct: 302 LAQVRPRQGRWLRLLPSVLIFASCAISIISLRTAIGKERISEY----AYIWLIVGFIAFA 357

Query: 352 LMIKKK 357
           L++  +
Sbjct: 358 LLLNWQ 363


>gi|189485654|ref|YP_001956595.1| permease YjgP/YjgQ family protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287613|dbj|BAG14134.1| permease YjgP/YjgQ family protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 384

 Score = 96.2 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 57/376 (15%), Positives = 114/376 (30%), Gaps = 25/376 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K   LY ++    SFL+       +  +  + + ++L  S   S  ++LK+  + +P +L
Sbjct: 3   KKLHLYTIKESFGSFLLGVAVFSILFILDYVFELVDLFLSKGVSFFLVLKLFAFALPNIL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P             ++ + E+  + ++G +  TL  P++ L  ++S FL    + +
Sbjct: 63  RLAIPMSVLFGILIAYGKLSEDNEITAMKSSGVNYRTLSLPIIILVCIISSFLLFFNHFL 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   S    L  +           E     L +           NNTL  + I    + 
Sbjct: 123 SPAMNSNFVNLYREILTKKPLIKFTEKTTIELGEYRLYANKVNRKNNTLYEVSIYKFENK 182

Query: 182 QTHKIYYAQSGSI------------------------DLDRQAIILNDGEVHRKSPIS-K 216
             +   Y    S                           +     + DG   + +     
Sbjct: 183 DDYCYGYNDEKSDKKSLFLQNNSKAWRIAASSAKVKSYQNGTQFFIYDGYWQKANFSDIN 242

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
           +++ M FKSY     S+        +  +  S  +         +         EF  R 
Sbjct: 243 NMTHMTFKSYCFFIPSSEVMKEQTLSMSEKSSPEILKTIKTCKEQDIPFTANEIEFWIRW 302

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
              L P+ F LI++          +          + + + +      +  K       I
Sbjct: 303 IYALAPISFVLIALPIGIMAGKDGKTIGFGMSLSIILVYYMLLILALILSEKEYVPANLI 362

Query: 337 PILYLFLFCISSIFLL 352
             L       + I L 
Sbjct: 363 MWLPNITVTAAGICLF 378


>gi|209519258|ref|ZP_03268060.1| permease YjgP/YjgQ family protein [Burkholderia sp. H160]
 gi|209500338|gb|EEA00392.1| permease YjgP/YjgQ family protein [Burkholderia sp. H160]
          Length = 365

 Score = 96.2 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 120/362 (33%), Gaps = 16/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ +     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++  ++G S    IKP+   A  + I +     +  
Sbjct: 62  IMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLARFIKPIGIFATPIIILIMFFVFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F        +   +    +      +  +    
Sbjct: 122 PWSNQQSKLIRARFQQRDEVSLLAPGQFRESPTTHRVFFIEKMSPDQGHVENVFVTSTEG 181

Query: 183 THKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                         +     + ++L +G  +   P   D  IM+F+ Y ++ +S      
Sbjct: 182 GKVNVVVSKNGHIETHKNGDRFVVLENGRRYDGEPGHPDFRIMEFERYGVKIQSQPVVNT 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRA 297
                   ++ L NP   N            +EF  R    L  +   L++I  A     
Sbjct: 242 PTTTGLPTMTLLRNPTNENL-----------AEFAWRAGLPLIAINLMLLAIPLAHQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    ++I          + IL++ +  I +    +  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQAWIEQGKMSFGVGLVILHVIVLGIVAFIFWLRVRN 350

Query: 358 YT 359
             
Sbjct: 351 RP 352


>gi|307566072|ref|ZP_07628530.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
 gi|307345260|gb|EFN90639.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
          Length = 427

 Score = 96.2 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/352 (12%), Positives = 110/352 (31%), Gaps = 4/352 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTVL 61
             + YI++    ++L + L I+ I+ V    + ++  +        I+       IP   
Sbjct: 69  RLDWYIIKKFIGTYLFAILLIISISIVFDFNENLSKFTQYHAPWRAIIFDYYANFIPYYS 128

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            + +P    +      + +  N+E++ +   G S   L++P +   I++S   F   + +
Sbjct: 129 NLFSPLFVFIAVIFFTSKLASNSEIIAMLAAGVSFKRLMRPYMISCIVISALTFYLNSFV 188

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      +   +  +     +  E        + +       +      G  +    + 
Sbjct: 189 IPHGTVIRQNFESLYRNNKKNTSAENVQLKVAKNTVAYIQYFDDHYKRGYGFSLAKFENK 248

Query: 182 QTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +      A     D     +    +++ ++ +   + + I+    K   L  E  +    
Sbjct: 249 KLVSHMTAMEIQYDTVADTKYHWKVSNYKIRQLKGLKEHITTGDEKDTILLMEPTDLVYS 308

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        LLN      +     +  Y  EFHKR+       I  +I +  + ++  
Sbjct: 309 KGQQETFTSPELLNYISKQNSRGLSNVVQYEVEFHKRIAMSFSAFILTIIGLSLSARKRK 368

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                 +            +    +    K    P     +  F+F   + F
Sbjct: 369 GGMGLYLGIGLGLSFSYILLQTVSATFAIKANTPPILAAWIPNFIFVFIAYF 420


>gi|149927923|ref|ZP_01916173.1| hypothetical protein LMED105_07563 [Limnobacter sp. MED105]
 gi|149823362|gb|EDM82595.1| hypothetical protein LMED105_07563 [Limnobacter sp. MED105]
          Length = 379

 Score = 96.2 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 120/353 (33%), Gaps = 18/353 (5%)

Query: 10  RCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCF 69
           +   ++   + + +  I     +++ +   +        +  +        LP       
Sbjct: 9   KDFAQTAGATFVALFTIIVTTVLVRTLGQAAGGKVDNAEVFTLILLGGLQYLPAALVITV 68

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTI 129
            +    V++   +  E+     +G S  +L++PVL  A+ L++   +    + P  ++ +
Sbjct: 69  FIAVMGVVSRAFKEQEMTAWFASGVSLFSLVRPVLRFAVPLTVLALVCSVWLTPWAKAEL 128

Query: 130 KQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYY 188
                +       S +    F    + +    + + +          V      T  +  
Sbjct: 129 DAAKDRFAKRSDVSKVSAGQFRESGEGNRVFFVERQSEVTKQVENVFVVDSKGDTRTVVS 188

Query: 189 AQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ 245
           A  GS+++D   +  ++L+ G         +  +  +F++Y L  ++   +    +   +
Sbjct: 189 AARGSVEVDASGQPYLVLSGGRRATLDGTGERFTSTEFETYGLAIDNTLGAAPSFQLQHR 248

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
            +  L+           +     + E   R++  +  ++ GL++I  A    +  +    
Sbjct: 249 RVDLLI----------ADFSPAAQGELLWRVSLPMSALVLGLLAIPLAF---VNPRGGNS 295

Query: 306 HPIFISLSISFGVFWGFSYIIHKI-EQNPYYIPILYLFLFCISSIFLLMIKKK 357
                +L I        S     + ++   +   L L    +  +F L++ K+
Sbjct: 296 LNQLFALLIYLTYSNIVSVTQSMVTKETLDFWVALVLPHASVLLMFYLLMVKR 348


>gi|260771005|ref|ZP_05879934.1| predicted permease [Vibrio furnissii CIP 102972]
 gi|260614242|gb|EEX39432.1| predicted permease [Vibrio furnissii CIP 102972]
          Length = 347

 Score = 96.2 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/338 (12%), Positives = 115/338 (34%), Gaps = 19/338 (5%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
            +  +    + ++ +   S       ++L I G  +P +  ++ P    +        + 
Sbjct: 1   MLFLVFLSQKFIRVLADASDGEIPARLILSIVGLNMPAMGLLMLPLSLYIGILLTFGRLY 60

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
             +E+ +++ TG     LI+  L+L ++ S     +   + P  +  ++ +  +     +
Sbjct: 61  AESEITVMNATGIGNKFLIRAALYLGVITSCLAGFNALWLSPWSQDKVQSVMEQLAAENS 120

Query: 142 FSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ--THKIYYAQSG---SIDL 196
              L++  F R  D   +       N  L  +F+      +     + ++ +G    +  
Sbjct: 121 VDLLQKGQFQRSPDGSSVVFIDNIENKKLSNVFVAQLTPRESILPSVMFSDAGDVKELSD 180

Query: 197 DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPN 256
            RQ I + +G  +   P   D  + KF  Y                       L+     
Sbjct: 181 GRQVITMYNGTRYEGVPTRVDYMVTKFDEYEGLIGQRAVKEKGRDWEAIPTLELI----- 235

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
                     + ++E   R++     V   L++++     A+  ++ +   +  ++ I  
Sbjct: 236 -----KNADRSAQAELQWRISL---VVCIPLLTMLVVPLSAVNPRQGRFAKMGPAILIYL 287

Query: 317 GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             F   S     + ++     I+ ++    + +   +I
Sbjct: 288 TYFLAISATKSAL-EDGSIPAIVGMWPINAALLISAII 324


>gi|254282226|ref|ZP_04957194.1| queuine tRNA-ribosyltransferase [gamma proteobacterium NOR51-B]
 gi|219678429|gb|EED34778.1| queuine tRNA-ribosyltransferase [gamma proteobacterium NOR51-B]
          Length = 389

 Score = 96.2 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 47/367 (12%), Positives = 123/367 (33%), Gaps = 20/367 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   Y+   I    L   + +  + +  + ++ +   +    + +ILL +  + +P+ 
Sbjct: 28  MRTL-KYLTGDILAHALAVSVVLFLVVFSGRFIRYLAEAAVGAITSDILLPVMLFKLPSF 86

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +     L  +  ++EL+++   G     L   +L  A+  S+ +      
Sbjct: 87  FELILPLGLFIGILLSLGRLYADSELVVLKACGVGPGKLATYLLLPALAFSLVVGFLSLY 146

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+  +  + +    + A     L E  F +     ++  ++   ++ +     V  + 
Sbjct: 147 LAPEGSARAQAMLDNPRSAEGLQQLSEGRFKKQRSGNFVSYAETISDDGVMHNIFVVEKS 206

Query: 181 TQTHKIYYAQSGSI-------DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
                                +  R+ + L DG  +   P   D ++ KFK Y       
Sbjct: 207 EAGTARTRVTYADAGEVVVDPENGRRYLELRDGARYEGVPGQADYTVTKFKRYGELIPER 266

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                     D   + LL  +            + ++  + R +  +   +  LI++   
Sbjct: 267 EGGIRDNLKTDAISTRLLLSDF---------SPSAQAALYWRFSLPVLVPVISLIALPL- 316

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                  +R +   +  +L +    F G +     +E        + + L       +L 
Sbjct: 317 --SRTDARRGRYAKLAPALLVFLAYFIGLTQARTAVESGDSGWWFVGVHLIFTLLAVVLT 374

Query: 354 IKKKYTK 360
             ++ +K
Sbjct: 375 FWEQLSK 381


>gi|254456522|ref|ZP_05069951.1| putative permease, YjgP/YjgQ family [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083524|gb|EDZ60950.1| putative permease, YjgP/YjgQ family [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 362

 Score = 96.2 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 128/360 (35%), Gaps = 16/360 (4%)

Query: 13  GRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAME 72
              FL++ +    + WV Q +  ++++     S ++ +  S    P ++  + PF     
Sbjct: 1   MSFFLIALISAGIVIWVFQAVNFLDIMIEDGRSYSVYISYSLLNFPKIINKLFPFILFFS 60

Query: 73  TTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQL 132
              V      N EL+I  N G ++I LI  +   +++L +   I   II PK +   +  
Sbjct: 61  LFYVTIKYENNNELIIFWNFGINKIQLINFIFKFSVILMLIQLIFSAIIVPKSQDLARSF 120

Query: 133 SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSG 192
              + +    ++++   F     ++ I   + + +  L  +++    +    +I YA+ G
Sbjct: 121 LRSSTVNFYENFIKPKRFNDTIKNVTIFSERKDIDGNLYNLYLKKEINENNFQITYAKKG 180

Query: 193 SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST--IVLKANDQNLSFL 250
                    +L        +  + +I+   F        +  +++     K  + +   L
Sbjct: 181 YFKEFNNLPVLVLFNGETITSKNNEITNFSFSKSDFPINNTETNSFVTQQKTQELSSYNL 240

Query: 251 LNP------------NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           L              +P   N      +    E +KR    ++ ++  LI ++       
Sbjct: 241 LKCVKFLIPTKKNKLDPKIINCSERNKDNIFKELYKRFIIPIYILVLTLIPLLVTILSKE 300

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +  ++  I   + + F +F      I  I  +      + L  F       L+  KK+
Sbjct: 301 DSKYSRLKFIAFLIGLFFIIFS--ETTIRLISDSIIKNISISLLPFIFIITLYLIFLKKF 358


>gi|157965014|ref|YP_001499838.1| putative permease [Rickettsia massiliae MTU5]
 gi|157844790|gb|ABV85291.1| Putative permease [Rickettsia massiliae MTU5]
          Length = 370

 Score = 96.2 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 153/361 (42%), Gaps = 11/361 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++PT+L 
Sbjct: 13  LYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLF-DKGIKVMDFFSLIVLVLPTLLF 71

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +    +  ++    +L+I+  +G   + L  P L++A+++ +  +   + I 
Sbjct: 72  ILLPVITVITVIYIYNNLKVERQLIILQASGVDNVQLALPALYVALIVMLLAYYISSTIL 131

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     +K      +     S +EE  F ++  D+ + I K +  N + G+ I D+R+  
Sbjct: 132 PLSHINLKSRLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNAD 191

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANS-----S 236
              + +A SG++++   + I    +  R+    + +++ + F S  ++ ++ N      +
Sbjct: 192 NPSVVFAGSGTLNIYDNSPIFELNKGRRQEYDVNGNLTQLTFDSLMIKLQNDNPLVSQRT 251

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +AN+  +S LL P  +    +        +E H+R+   L+  +   +++    + 
Sbjct: 252 KHNKEANEYYISELLAPPHDLAITKKI---KLIAEAHQRIIWPLYNFVLPFVTLAVFLRY 308

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              ++   +  +F +L I   V      + +   +N  +I   Y  L    +I L +  +
Sbjct: 309 PYSKKTTFMPVLFSAL-IVLLVTSIHFILQNFASKNLDFIFACYFNLVIALTIGLYLFVR 367

Query: 357 K 357
           K
Sbjct: 368 K 368


>gi|262373935|ref|ZP_06067212.1| permease YjgP/YjgQ family protein [Acinetobacter junii SH205]
 gi|262310946|gb|EEY92033.1| permease YjgP/YjgQ family protein [Acinetobacter junii SH205]
          Length = 356

 Score = 96.2 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/356 (11%), Positives = 114/356 (32%), Gaps = 4/356 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    ++ +    + L + L + F+  +   L  +  +     +         +  P  L
Sbjct: 5   RIVAKHVTKTTVLAMLGTTLVLSFLQVLFTYLGELGSL-KPNYNAWQAFLYVMWGAPRYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    + +   L ++  N+EL+++ + G S   ++  V+  A+LL +  F+    +
Sbjct: 64  YEILPVAALIGSVLGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFVLSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      + +  +  +A                      +       +Q   I   ++ 
Sbjct: 124 IPYTNEKAQSIKKQRSVATLGEVKGYWSREGQRFTYIDYANSQGQLRNIQS--IDFDQNY 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +      A+ G    D Q  + +  +V   +  +   +    ++  L  +      + L 
Sbjct: 182 RLQSFITAEKGQFVKDGQWTLQDSHQVDLLAQGNAIKTDHAQQALGLALQPKYVHMVTLD 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             D + S L++       Y  ++ ++Y   F ++++     +   LI+          + 
Sbjct: 242 PEDLSPSQLVSFMRYLEEY-SQVPKSYELAFWQKVSSPFALIALVLIACSFIFGPLRQQS 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I +   + F     F      +        +L   +        L+ + +
Sbjct: 301 MGFRLVIALFTGLGFFYLQDFLGYASLVYAPSPAWFVLLPIMLMFGIGSYLLYRAR 356


>gi|226951740|ref|ZP_03822204.1| permease YjgP/YjgQ-like protein [Acinetobacter sp. ATCC 27244]
 gi|294648982|ref|ZP_06726430.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|226837530|gb|EEH69913.1| permease YjgP/YjgQ-like protein [Acinetobacter sp. ATCC 27244]
 gi|292825117|gb|EFF83872.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 356

 Score = 95.8 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/356 (11%), Positives = 110/356 (30%), Gaps = 4/356 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    ++ +    + L + L + F+  +   L  +  +     +         +  P  L
Sbjct: 5   RIVAKHVTKTTVLAMLGTTLVLSFLQVLFTYLGELGSL-KPNYNAWQAFLYVLWGAPRYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    + +   L ++  N+EL+++ + G S   ++  V+  A+LL +  F     +
Sbjct: 64  YEILPVAALIGSVLGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFTLSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      + +  +  +A                      +       +Q   I    + 
Sbjct: 124 IPYTNEKAQSIKKQRSVAALGEVKGYWSREGQRFTYIDYANSQGQLRNIQS--IDFDENY 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +      A+ G+   D Q  +    ++      +   +    ++  L  +      + + 
Sbjct: 182 RLQSFVTAEQGNFVKDGQWTLEQSHQIDLLPQGNAIKTDHANQALALALQPKYVHMVTID 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             D + + L++       Y  ++ +TY   F +++      +   LI+          + 
Sbjct: 242 PEDLSPTQLISFMRYMEEY-SQVPKTYELAFWQKVASPFALIALVLIACSFIFGPLRQQS 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I +   + F     F      +        +L   +        L+ + +
Sbjct: 301 MGFRLVIALFTGLGFFYLQDFMGYASLVYAPSPAWFVLLPVVLMFMIGSYLLYRAR 356


>gi|15888447|ref|NP_354128.1| hypothetical protein Atu1107 [Agrobacterium tumefaciens str. C58]
 gi|15156139|gb|AAK86913.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 362

 Score = 95.8 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 114/355 (32%), Gaps = 12/355 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y L+    + +   L +  I ++    +    +S     S+   L ++   +P +
Sbjct: 4   NTLARYFLKRYLMTTIWFVLGVSSIIYLADFSETARRMSGLPGYSVPAALGLTALRLPLI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF         L S+NR  EL++    G S    I P +  A+ + I   +  N 
Sbjct: 64  LQQTVPFIALFVGMTTLISLNRRYELVVTRAAGISAWQFILPFVLGAVFIGILSVMVLNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL----DDDLYIKISKYNPNNTLQGIFIV 176
           I    ++    + A  +        +E + +        D  I    +  N T+    ++
Sbjct: 124 IAAWGQNKSLAMEAGLRNDAGGGRQQEIIPWMRQSSGGKDTIIGAKSFEDNGTMLLDVVL 183

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              D   + +    + S  L+    +LN     R           +    +         
Sbjct: 184 IDVDKDGNIVSRKDAKSAKLEDGYWLLNGVSETR---AGHVPVRQESMQISTNLRREFVQ 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + +        L +      ++     +   +++H  L+  L  V   LI+   +   
Sbjct: 241 ERMTQTETVAFFDLSHKIEVAKSF-GLSSKALETQYHFLLSTPLLLVAMTLIAATVSL-- 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              R  +    I   +   F ++   + ++          P + +++  I ++ L
Sbjct: 298 KFSRFAQSRSVILGGIVSGFVLYVV-TVLVRAFGSGGVVPPTVAVWVPVIVALAL 351


>gi|303258295|ref|ZP_07344302.1| permease YjgP/YjgQ [Burkholderiales bacterium 1_1_47]
 gi|302859048|gb|EFL82132.1| permease YjgP/YjgQ [Burkholderiales bacterium 1_1_47]
          Length = 378

 Score = 95.8 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/379 (11%), Positives = 123/379 (32%), Gaps = 24/379 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK     I   I +S L   L +V +     ++ +   + +S  S+     ++  ++PT 
Sbjct: 1   MKIVSRMIFAQIMKSSLFVLLTLVALFAFFDLIGQSGNIGTS-YSMGQAFLLTALILPTR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    + +   L+ +   ++  ++  +G         +L   I+L I  ++  N+
Sbjct: 60  CYEVLPIAVMLGSIFTLSRLASTSQFTVLRVSGIGPWRFCGMLLMPGIVLVICAYLLGNL 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL----------YIKISKYNPNNTL 170
           + P  +   K+       +       ++  +  D             ++ + +  P    
Sbjct: 120 VAPPAQRLAKEFKLDISGSAFTGKELDSGIWVRDVQRNEAGEPKKISFVNVQRLRPGEAA 179

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDG----------EVHRKSPISKDISI 220
               +                     +++  +L+D           E   ++    +  +
Sbjct: 180 YDWVVYVFDRPDHLTSIVTAKSGTYSEQEGWVLHDVVEETVPTLPKESREQTQARVERKV 239

Query: 221 MKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL 280
           MK   +    +      +++K  D +L  L +          +  + + + F  +    L
Sbjct: 240 MKSMVWGKSLDGNIFGLLMIKPEDMSLQEL-HYYIEYLKENGQTYKRFDTAFWSKAFYPL 298

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
             ++  L+S+  A + A            I + I +         +  ++  P  I  + 
Sbjct: 299 AILVMLLLSMPFAYQNARAGGMAIKIFCGIMIGIFYYALNNLFAFMSALDSVPSIISAIL 358

Query: 341 LFLF--CISSIFLLMIKKK 357
             +     + I +  ++++
Sbjct: 359 PSVMMTLAAIIAMWYVERR 377


>gi|53713591|ref|YP_099583.1| hypothetical protein BF2302 [Bacteroides fragilis YCH46]
 gi|60681871|ref|YP_212015.1| hypothetical protein BF2391 [Bacteroides fragilis NCTC 9343]
 gi|253565580|ref|ZP_04843035.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|52216456|dbj|BAD49049.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|60493305|emb|CAH08089.1| putative membrane protein [Bacteroides fragilis NCTC 9343]
 gi|251945859|gb|EES86266.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301163363|emb|CBW22913.1| putative membrane protein [Bacteroides fragilis 638R]
          Length = 365

 Score = 95.8 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 123/362 (33%), Gaps = 7/362 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  +LYI++    +++ +   I+ IA V    ++++     +   + I+       IP  
Sbjct: 8   KRLDLYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKFMERSAPWSAIIFDYYMNFIPYF 67

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ + +TG S   +++P +  A +++I  FI  + 
Sbjct: 68  ANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMISAGIIAISTFILGSY 127

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+   T      K       +Y+           +    +  + N T     +    D
Sbjct: 128 VIPRGSVTRLDFEDKYVKKKKTTYVHNIQLEIDTGVIAYIDNYQDYNKTGNRFSLDKFVD 187

Query: 181 TQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +      A+S + D        + D  +     + + I         +  E A+   + 
Sbjct: 188 KKLVSHLTARSITYDTTAVNKWTIKDYMIRNLDGLKETIVRGDKMDSIIPMEPADFMIMR 247

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +        L              ++ +  E+HKR+       I  +I +      +  
Sbjct: 248 NQQEMLTSPQLSAYIDKQKQRGIANIKEFEIEYHKRIAMSFASFILTVIGVSL----SSR 303

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKKY 358
           + +  +             +  F  +      N    P++ +++   + ++    + +K 
Sbjct: 304 KTKGGMGLHLGIGLGLSFSYILFQTVASTFAVNGNMPPMIAMWIPNLLYALIAFYLYRKA 363

Query: 359 TK 360
            K
Sbjct: 364 PK 365


>gi|323525104|ref|YP_004227257.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1001]
 gi|323382106|gb|ADX54197.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1001]
          Length = 365

 Score = 95.8 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 120/362 (33%), Gaps = 16/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ +     +++ +   +        +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAAQGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++  ++G S    IKP+   A  + I +     +  
Sbjct: 62  IMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGMFATPIVILIMFFVFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F        +   +    +      +  +    
Sbjct: 122 PWSNQQSKLIRARFQQRDEVSLLAPGQFRESASTHRVFFIEKMSPDQGHVENVFVTSTEN 181

Query: 183 THKIYYA----QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + +     + ++L +G  +   P   D  IM+F+ Y ++ ES      
Sbjct: 182 GKVNVVVSKNGHTETHKNGDRFVVLENGRRYEGEPGHPDFRIMEFERYGVKIESQPVVNT 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRA 297
                   L+ L NP   N            +EF  R    L  +   L++I  A     
Sbjct: 242 PTTTGTPTLTLLRNPTNENL-----------AEFAWRAGLPLIAINLMLLAIPLAHQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    S+I          + IL++ +  I +    +  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQSWIEQGKMSFGVGLVILHVIVAGIVAFIFWLRVRN 350

Query: 358 YT 359
             
Sbjct: 351 RP 352


>gi|323137698|ref|ZP_08072774.1| permease YjgP/YjgQ family protein [Methylocystis sp. ATCC 49242]
 gi|322396995|gb|EFX99520.1| permease YjgP/YjgQ family protein [Methylocystis sp. ATCC 49242]
          Length = 361

 Score = 95.8 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/352 (11%), Positives = 100/352 (28%), Gaps = 9/352 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTVL 61
           +   Y      R+ L     I  + +V+  ++ +   S + +    ++  ++   +P   
Sbjct: 5   TITRYFAWRFMRTILAIFFTIFCLMFVVVFVEMLRRASDNPQAGAGMVALMTAMKVPAAA 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M+ PF     +      + R  EL++    G S    I P +  A+L+ +F     N +
Sbjct: 65  EMILPFAVLFGSMATFVDLTRKLELIVARAAGMSVWQFITPPVLTALLIGVFSVAVYNPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEE--NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
               +    Q+  +         ++    L     D L +  +        +  F+  + 
Sbjct: 125 SASMKQRSDQMELELFGVPGSLRIDHGVWLRQHGVDGLAVMHAMGTAKGGTELTFVSVNI 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +                   + + +G +   S   +    +             ++   
Sbjct: 185 YSPNGGFLERVEAQSARLEPGVWVLNGAI--VSAPGEPARPVASYMLATDLTPEQAAAAT 242

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                     L            +    YR +F   L + L  V   L++   +      
Sbjct: 243 TPPQGTPFWELPEMTARTTEAGLDSTG-YRLQFQTLLARPLLLVAMVLVAASFSL--RFF 299

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           R       +   ++  F ++     +           P++  +   +    L
Sbjct: 300 RFGGVAKTLSGGVAAGFVLYIVTKVLSDLGGA-GLISPLVAAWSPALVGSML 350


>gi|262376977|ref|ZP_06070203.1| permease YjgP/YjgQ family protein [Acinetobacter lwoffii SH145]
 gi|262308015|gb|EEY89152.1| permease YjgP/YjgQ family protein [Acinetobacter lwoffii SH145]
          Length = 356

 Score = 95.8 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 111/355 (31%), Gaps = 5/355 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    ++ +    + L +   +  +  +   L  +  +          LK   +  P  L
Sbjct: 5   RIVAKHVTQTTALAMLGATAVLAGLQVLFTYLGELGSL-KDGYGAWDALKYVLWGAPNYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L ++  N+EL+++ + G S   ++  V+  A+LL +  F     +
Sbjct: 64  YEILPISALIGAVLGLGTLASNSELIVMRSVGVSLWRIVGWVIRSALLLVVLSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      K + + ++ A                      +       +Q   +   ++ 
Sbjct: 124 IPYTNEQAKSVKSASKAAQLGEVRGYWTREGQRFIYIDYANSQGQLKNVQ--MLDFDQNY 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +      A  G    D    + N  +       +  +   + +   L  +      + + 
Sbjct: 182 RLRGTLQADQGQFVKDGSWTLDNTEQFDILQNGNATLVKQQQQPLALALQPKYVHMVTID 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             D + S L++       Y  ++ +TY+  F ++L      +   +I+          + 
Sbjct: 242 PEDLSPSQLVSFMSYMHEY-SQVPKTYQLAFWQKLGSPFALIALVVIACSFIFGPLRQQS 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                 I +   + F     F      I   P     +++ +  +  I   ++ +
Sbjct: 301 MGFRLVIALFAGLGFFYLQDFLGYASLIYA-PSPAWFVFIPILIMFGIGGYLLHR 354


>gi|182677644|ref|YP_001831790.1| permease YjgP/YjgQ family protein [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633527|gb|ACB94301.1| permease YjgP/YjgQ family protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 362

 Score = 95.8 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 100/352 (28%), Gaps = 4/352 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   Y+        L     I  + +VI +++ +    +    + +++  +S    P+V 
Sbjct: 6   TLGRYLSSRFLFMILAVFGTIFSMIYVIDLVEMLRRAGNRPGATASLIAFLSFLRAPSVS 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PFC    T     ++ R  ELL+    G S   L+ P L +A+ + IF     N I
Sbjct: 66  EQILPFCVLFGTMATFINLTRRLELLVARAAGISIWQLMMPPLGIALAIGIFSVTLYNPI 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
               +     +  +    +     +  L+ R +      I +              +  T
Sbjct: 126 SAMMKHRADGIETELFGGIGGQETKGGLWIRQNSVDGQAIIRAETVEAGGSRLGGVTLYT 185

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                 +         +    +      R     ++I                 S  ++ 
Sbjct: 186 YGKDGSFEARIEARHAKLVPGVWQMTEARIIVPGEEIQEAGLYLLATNLTPGEVSENIVT 245

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                   L +               YR +F   L + LF +   LI+   +      R 
Sbjct: 246 PESVPFWELQS-FRAATELAGLDSTRYRLQFQLLLARPLFFIAMVLIAAAFSL--RFFRF 302

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                 +       F ++    +            PI       ++S+   +
Sbjct: 303 GGITKMVCGGAGAGFVLYIVSKFTGDLGTSGLLSAPIAAWSPAVVASMLGAL 354


>gi|332290237|ref|YP_004421089.1| putative permease YjgP/YjgQ family [Gallibacterium anatis UMN179]
 gi|330433133|gb|AEC18192.1| putative permease YjgP/YjgQ family [Gallibacterium anatis UMN179]
          Length = 363

 Score = 95.8 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 127/354 (35%), Gaps = 15/354 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++   +S L     ++ I    Q+++ +    +    ++++L + G  +PT+  
Sbjct: 2   ILTKYLIKETLKSQLAILFILLVIFLAQQLVRVLGSAVNGNVPVDVILPLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G     L+K  L L+I+ +     +   + 
Sbjct: 62  LMLPLSLFLALLLTLGRLYSESEITVMQACGIGPNALVKVGLILSIVTAAIAAYNSLYLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+   + S +    F   ++  ++        + L  I++  +R   
Sbjct: 122 PWALKKQVEVVENAKANPSASAITPGQFISSNNGNFVLFVDKVKGDQLSDIYLFQTRQVG 181

Query: 183 --THKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G+        Q + L +GE    S +  +  +  F+ Y        +  
Sbjct: 182 KVKPSVIVAEQGNFSTAKDGSQTLALKNGERFEGSAVLPEFRVTHFQDYLAFLAFNPAKA 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                + Q+ + LL                 ++E   R++ +L   +  LI+I  +    
Sbjct: 242 EEADLDMQDSNALL----------KNSSANAKAELQWRISLFLAVPLMMLIAIPLSKVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              +  KI P  +   I F +           +   +Y  IL   LF +  I L
Sbjct: 292 RQGRFAKIIPALLLYLIYFLLQSSLKTAGINGKIESHYWMILVNMLFLLLGIIL 345


>gi|75675870|ref|YP_318291.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
 gi|74420740|gb|ABA04939.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
          Length = 365

 Score = 95.8 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 107/360 (29%), Gaps = 15/360 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y       + L     I  +  ++  ++ +   S  ++ S  ++ + S + +P +
Sbjct: 6   NTLGRYFAGRFMVAALGVFASIFLLLVLVDYIEMVRRTSGLASASALMVAETSLFRVPQL 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  +TPFC  +       +++R  EL++    G S    I P L  AI L +F     N 
Sbjct: 66  LEKLTPFCVLIGAMTCYLALSRKLELVVARAAGVSAWQFISPTLACAIALGVFATTVYNP 125

Query: 121 IEPKCRSTIKQLSAKAQLA------LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           +    R   K++ A+             S    N        +            L G+ 
Sbjct: 126 LSSNLRELSKRMEAEMFGGASGGGLHDASGFWINQVTDDGQAIINAALSEQQGVRLTGLT 185

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +         +       +   D +   L  G   R +  +  +    F   T     A 
Sbjct: 186 VFRFDPDSRFRERIEAREAALEDGRW--LFKGV-RRFTLDNPPVEQETFVLPT-SLTPAQ 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                      +   L +    +          YR ++HK + Q        +++   + 
Sbjct: 242 VQNSFSTPETVSFWQLPD-YIRSSESSGFATAGYRLQYHKLIAQPFLLAAMVMLAASVSL 300

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                R       +   +   F ++   S +   + +     PI   +L          +
Sbjct: 301 --RFFRFGGVQKMVLSGVGSGFLLY-VLSKVTEDLSKAELMNPIAAAWLPVCVGGLTGFL 357


>gi|91788271|ref|YP_549223.1| permease YjgP/YjgQ [Polaromonas sp. JS666]
 gi|91697496|gb|ABE44325.1| permease YjgP/YjgQ [Polaromonas sp. JS666]
          Length = 381

 Score = 95.8 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/384 (11%), Positives = 119/384 (30%), Gaps = 30/384 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST--------ESLNILLKI 52
           M++    I   +  +  +  L  + + +   ++  +  +  +           +   L  
Sbjct: 1   MRTIRRLIYGEVLTAIALVALGFLALFFFFDLVDELQYLGKNNGLSAAADIYQIRHALLY 60

Query: 53  SGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSI 112
              LIP  L  + P    + T  V+  + +++E  I+  +G      ++ +L L      
Sbjct: 61  VALLIPNHLYELLPISVLIGTIFVMARLAQSSEYTILRTSGLGPWRALRLLLVLGAAFVT 120

Query: 113 FLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEEN-LFFRLDDDLYIKISKYNPNNTLQ 171
             F   + + P      + L A+ Q  +T           +  +   + + +  PNN ++
Sbjct: 121 LSFAVGDYVAPTSERAAQLLKARYQSKITVGQTGAWLKEKQPYNSYVVNVKELTPNNEMK 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-------------SPISKDI 218
           G+ I +  +            +      A +L                     +      
Sbjct: 181 GVQIFEFDNKGLIVSTTQAPVAQFTGGDAWMLKQASRAEFDVPASPADISKPQNGARVSR 240

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
           + ++   +  +  +   S  +LK    +   L N    + N   +  + Y  EF K++  
Sbjct: 241 TTLQTFRWPTEISAEMVSVALLKPERMSTLDLFN-YVRHLNANGQTAQRYEIEFWKKVFY 299

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
            L  ++  ++++  A      R       +F  + I    F   +   +      +   +
Sbjct: 300 PLSCLVMVMLALPFAYL--HFRSGGIASYVFAGVMIGISFFLLNNVFGYIGNLRNWQPWL 357

Query: 339 LYLFL-----FCISSIFLLMIKKK 357
                           F  ++ ++
Sbjct: 358 AAATPGLMYMAVSLGAFGWLVLRR 381


>gi|171059278|ref|YP_001791627.1| permease YjgP/YjgQ family protein [Leptothrix cholodnii SP-6]
 gi|170776723|gb|ACB34862.1| permease YjgP/YjgQ family protein [Leptothrix cholodnii SP-6]
          Length = 368

 Score = 95.8 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/369 (10%), Positives = 107/369 (28%), Gaps = 13/369 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M +    + R I  +     +  + + + I  +  +  +                 +P  
Sbjct: 1   MHTIRRLLYREILGATGYVMVAFLGLFFFIDFMAELENIGQHGYGAAQAALACLLQVPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +     L  +  ++E  I+   G      +  + +L +  +   F+  + 
Sbjct: 61  VYELAPIAVLIGAIYALARLAHSSEFTILRTGGLGPGLALLLLTWLGLGFAAITFVIGDF 120

Query: 121 IEPKCRSTIKQLSAKAQLALT-----FSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           + P C +    L A+A   L+         +       +    +  +    +  L+ + I
Sbjct: 121 VAPWCDTQATLLQARASGNLSVASGGAWLKDSASAADGEHRYTVNFAAARSDGELEKVRI 180

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI----SIMKFKSYTLQTE 231
            +               ++  D     L D  +   +            +    +     
Sbjct: 181 FEFGPKGALITRTTAERAVIGDDGTWQLTDVRISHWTSDHTPRLDADEKLASHVWQSGLT 240

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               +  VL     +   L N    +     +  + Y  +F K+       ++   +++ 
Sbjct: 241 RNVVAAAVLPLRTMSTLALYN-YMTHLADHEQAAQRYEIQFWKKALYPFACLVMMGLALP 299

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI---LYLFLFCISS 348
            A           +    I L I F +    S  +  ++    ++       +FL    +
Sbjct: 300 FAYLHGRSGGIGLMVFGGIMLGIGFVLLNNLSSHLGLLQNWTPWLAASAPSAIFLLLSLA 359

Query: 349 IFLLMIKKK 357
            F  +++ +
Sbjct: 360 AFSWLVRYR 368


>gi|332885188|gb|EGK05439.1| hypothetical protein HMPREF9456_02640 [Dysgonomonas mossii DSM
           22836]
          Length = 365

 Score = 95.8 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 125/357 (35%), Gaps = 11/357 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +   + YI++    +++ S + I+ I+ V  I +R++   S+   L  I+       +P 
Sbjct: 4   LSILDKYIIKKFLGTYIFSIILIISISVVFDINERLDKFLSNNAPLKAIVFDYYMNFVPY 63

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +     +      + +  N+E++ + + G S   L+KP +  A ++++  FI  +
Sbjct: 64  YTNLFSALFVFIAVIFFTSKLADNSEIIAMLSNGMSFKRLMKPYMISAGIIAVGSFILSS 123

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I P    T  +   K             +  ++D  + + I +++    L     +D  
Sbjct: 124 FIIPPANETRIKFQNKYIKDK-SVDYASRIQMQVDKGVILYIERFDNKTRLGYNLSLDKF 182

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +  K     S          +LN+  +     + + I+       TL    ++    V
Sbjct: 183 EGKELKSRLVASRIEYDTAYHWVLNNYSIREFHGMKEKITTGTRIDTTLNVIPSDFLVSV 242

Query: 240 LKANDQNLSFLLNPNPNNPNY-----RPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 +   L +                 +  +  EFHKR        I  +I      
Sbjct: 243 NDFEQMSTPKLYSYIQRQKEKGLANVGGVSITQFEIEFHKRFASVFSAFILTIIGASL-- 300

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             A   +      I I L +S   +  F  +      +    P+L +++  I  +F+
Sbjct: 301 -SARKMKGGMGLNIGIGLGLSVT-YIMFQTVSSSFAVSGTMPPMLAVWIPNIVFMFI 355


>gi|58038774|ref|YP_190738.1| hypothetical protein GOX0299 [Gluconobacter oxydans 621H]
 gi|58001188|gb|AAW60082.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
          Length = 396

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/361 (9%), Positives = 95/361 (26%), Gaps = 17/361 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
            +  +YI R    S L   L +  +  +   +  +   ++      ++++KI+   +P  
Sbjct: 31  TTLAIYIARQFMLSTLSMVLALTGLVSLFDFIDLLRRAATRPNVPASLIVKIAALHVPYY 90

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA----------ILL 110
           +  V PF   +      + + R++EL++    G S    +   L  A          I  
Sbjct: 91  IIYVLPFGILLGGIVCFSRLTRSSELIVARAAGISAWQFLASPLACALLTGLLTTTGISA 150

Query: 111 SIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL 170
                     +  +                 +    ++        +      +  +  L
Sbjct: 151 LSSTMFRSAEMLDQTYLRTGGGPLTLNGGALWLRQSDDGLVPHGVAILHAQDVHLIDGAL 210

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
           +   +   R     ++                +  G              +   +     
Sbjct: 211 KVSGVSIFRLDDRDRLIVRVEAPQGALGDHQWILHGT--SVLHPDHLPQQIGDMTLPSDL 268

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                       +  ++  L     +           +R  F   L   +      L  +
Sbjct: 269 TVGRVQESFASPDTLSVFAL-PGFISLLERSGFPSIRHRLHFQSLLALPILAGTMAL--V 325

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
            A       R+      +   ++  F +F   S +  +  ++    P+L  +    + + 
Sbjct: 326 SAGFSMRPTRRGGVARMLGSGIAAGFALF-TISKVAEQFGESGALPPVLAAWAPTGAGLC 384

Query: 351 L 351
           L
Sbjct: 385 L 385


>gi|50083533|ref|YP_045043.1| hypothetical protein ACIAD0255 [Acinetobacter sp. ADP1]
 gi|49529509|emb|CAG67221.1| conserved hypothetical protein; putative permease [Acinetobacter
           sp. ADP1]
          Length = 356

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/356 (10%), Positives = 116/356 (32%), Gaps = 4/356 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    ++ +    + L + + +V +  +   L  ++ + +   S         +  P  L
Sbjct: 5   RIVAKHVTKTTALAMLGTTIVLVILQVLFTYLGELSNLKAD-YSAWQAFLYVLWGAPRYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L ++  N+EL+++ + G S   ++  V+  A++L +  F     +
Sbjct: 64  YEILPISALIGAILGLGTLASNSELIVMRSVGISLWRIVGWVIRSALVLVLLSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P        + +   +A                      +        +   +    + 
Sbjct: 124 VPYTNERANSVKSHQSVAALGEVRGYWSREGQRFIYVDYANS--QGQLKRIQVVDFDDNY 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   +  A+ G    D Q ++ +  ++  +      ++    + ++L  +      + + 
Sbjct: 182 RLKSVTNAEQGQFVKDGQWLLNHSQQMAIQGQGDAVLANAAKQPFSLALQPKYVHMVTID 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             D + S L++   N      ++ +TY+  F K++      +   L++          + 
Sbjct: 242 PEDLSFSQLVS-FMNYMREYSQVPKTYQLAFWKKVASPFALITLVLVACSFIFGPLRQQS 300

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I + + + F     F      +        +L   +    +   L+ + +
Sbjct: 301 MGFRLVIALFIGLGFYYLQDFLGYASLVYNPSPAWFVLGPIVLMFVAGSYLLYRAR 356


>gi|329907054|ref|ZP_08274546.1| putative Membrane protein; putative permease [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547111|gb|EGF31985.1| putative Membrane protein; putative permease [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 378

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/377 (11%), Positives = 113/377 (29%), Gaps = 21/377 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y  + I R+ L   L  + +     ++  +  V      +          +P  
Sbjct: 1   MTVLQKYFGKEILRAVLFVLLAFLALFAFFDLINELPAVGRGGYKIQHAFLYIALGLPGY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    + +  VL  M  N+E  I+  +G S       +  + ++  +  F+   +
Sbjct: 61  TYELMPIAALIGSIYVLAQMASNSEFTIMRVSGLSTRQAGFMLAKIGLIFVLITFLFGEV 120

Query: 121 IEPKC--------RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG 172
           I P          +      S + +  L       +    +    ++ + +  PN  L+ 
Sbjct: 121 ISPLTAERAERLKQQAQGTTSKEFRSGLWTKDQIRDGSGAMIGSRFVNVGELLPNGQLKD 180

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-----------SPISKDISIM 221
           + + +             S +     +  +L+D    R               S   +  
Sbjct: 181 VKLYEFDSELRLTSMVTASTADFQGDRRWLLSDVATTRFALTVFNLAVLPDAPSGIATTT 240

Query: 222 KFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
                 +   + +  ++     D+  +  L     +     ++ E Y   F K++     
Sbjct: 241 APTRELISDITPDILSVTFADPDRMSALDLATYTRHLAENRQVTERYDIAFWKKIIYPFA 300

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
             +   +++  A   A          + I + +SF +       I  +   P     +  
Sbjct: 301 VFVMMALALPFAYLHARSGGVSLKIFMGIMIGVSFKLINSLFSHIGLLNTWPPLATAIAP 360

Query: 342 FLFCISSI--FLLMIKK 356
            L  ++     L  +++
Sbjct: 361 SLLFLAGALGALWWVER 377


>gi|319944264|ref|ZP_08018540.1| permease YjgP/YjgQ family protein [Lautropia mirabilis ATCC 51599]
 gi|319742559|gb|EFV94970.1| permease YjgP/YjgQ family protein [Lautropia mirabilis ATCC 51599]
          Length = 369

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 122/361 (33%), Gaps = 18/361 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F   + R +     +    +  I     +++ +N  +S   + + +L +  +     +P
Sbjct: 2   IFRQSLRRDLNSVAGVMFATLFTILVTTSLIRFLNRATSDRIASSDILPLIAFNAIGFIP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VL    R++E++I   +G S    I+PV+   +  +  +     ++ 
Sbjct: 62  VLLVLTVFLSVLMVLARAWRDSEMVIWFASGQSLTAWIRPVMMFVLPYAAVVAAVTFVLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     I +L  +       S +    F        +   +    +      +   +   
Sbjct: 122 PWANQQIAELRERFNQREDVSMVAPGQFRESTSSNRVFFVESMSPDKSTVSNVFVVQHNG 181

Query: 183 THKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              +  A  G      +   + ++L DG  +  +  + + S+M+F  Y ++ +    +T 
Sbjct: 182 PRMVVVASRGGHVKIEENGDRFLVLEDGRRYDGTWGTPEYSLMEFLRYGVRLDPKPVNTQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           +          L+                 R E   R+   +   +  L++I  +    +
Sbjct: 242 IESVRGMATPDLMQL----------SSPAARGELAYRVGLPISVFVIALLAIPLSF---V 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKI-EQNPYYIPILYLFLFCISSIFLLMIKKK 357
             +      + I + I F      S +   I ++   +   ++L    +  + L M +K+
Sbjct: 289 NPRLGSSVNLVIGVLIYFTYSNLNSVVRSWITQEKLSFGVGVWLTHALVLGLALYMFRKR 348

Query: 358 Y 358
            
Sbjct: 349 L 349


>gi|87121691|ref|ZP_01077578.1| permease YjgP/YjgQ [Marinomonas sp. MED121]
 gi|86162942|gb|EAQ64220.1| permease YjgP/YjgQ [Marinomonas sp. MED121]
          Length = 353

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 123/356 (34%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI + +  +F      ++ + +V+  ++++  +S    +++ LL++    +P+ 
Sbjct: 1   MKQLDSYIGKGVVWAFFAVVFILLGLDYVLTFIEQVKRISEF-YTISNLLEVLLLRLPSK 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    + T   L ++   +EL +I   G     +    +   +++S+        
Sbjct: 60  FAEYIPIASLIGTLVGLGALASTSELTVIRAAGIPIWRIGWSAIKPILIISLIGVGISEF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P        L    +   T   +     +   ++ YI I   +   TL  + + +S++
Sbjct: 120 IAPNADQR-ANLIENLKKQQTSDNIISGGVWIRSEEKYIFIGAADQKGTLYNVKVFNSKN 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                   A++       +   LN     +      + +   F+S T+  +  +      
Sbjct: 179 QTLQSTQIAKTAQYKTADE-WTLNQVTNTQFLADKIESNNTNFESLTMTFKPEHLYLATQ 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +    +LS  ++   N    +      Y  EF  +  + +  +   LI++ +        
Sbjct: 238 EPEALSLSQSIS-YQNYLEGQDLNTSRYELEFWTKALRPVASIALVLIALSSVFGPLRSS 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                    + + I F         +         + +L + +    +I  L +K+
Sbjct: 297 TMGSRIFSGVMIGIIFQNGLNLFGRMSLAADFSPLLGVL-IPIAICLAIGTLQLKR 351


>gi|320335817|ref|YP_004172528.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
           21211]
 gi|319757106|gb|ADV68863.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
           21211]
          Length = 366

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/367 (12%), Positives = 129/367 (35%), Gaps = 17/367 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++ ++ Y++  I    +   + ++    V  +L+ I  + +   S  ++ ++    +P  
Sbjct: 6   LRRYDRYVMAEILPLLVAGLVVVMLAVLVGALLEVIAPLLAKGASPALVARLVALQLPEA 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P  F   T   L+ ++ + E+      G +   L  PVL + + +++  F+    
Sbjct: 66  IKIGLPVGFLFATLLGLSRLSSDAEIKAALAGGVAPGRLFLPVLLMGVGVTVAAFVIGET 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI---SKYNPNNTLQGIFIVD 177
           + P+ ++    +  +  L        +     L D L   I                +  
Sbjct: 126 LGPRAKTESLSVQRQIVLDNPRVLGLDQPGLILRDALNRAISVTRVRPGGVLEGVRVVAL 185

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL---QTESAN 234
                   I  A+ G +       +L DG+        + +++++F+   L     +++ 
Sbjct: 186 RESGGPSSIITAREGHLRDSNVLELL-DGQRITYQ-DGRPVTVIRFRRGELPVQDLQASF 243

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            ++   K  D  L  L          +        +   ++  + L  +  G  ++  A 
Sbjct: 244 KTSDAPKPIDTPLPQL-WAKVQTYAQQHVNAPQETTALQRKFAEPLAALAMGFFAVALAL 302

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIF 350
                 +      +   L ++F  +  +S     + ++    P++  +    L+ ++ + 
Sbjct: 303 ---FTFRSGLNVGLVWVLLLTFAYYASWSVF-RVMGESGALPPVVAAWTPDVLYLVAGLV 358

Query: 351 LLMIKKK 357
           LL I  +
Sbjct: 359 LLAIAAR 365


>gi|187929752|ref|YP_001900239.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12J]
 gi|309781532|ref|ZP_07676268.1| membrane protein [Ralstonia sp. 5_7_47FAA]
 gi|187726642|gb|ACD27807.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12J]
 gi|308919945|gb|EFP65606.1| membrane protein [Ralstonia sp. 5_7_47FAA]
          Length = 397

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/396 (11%), Positives = 112/396 (28%), Gaps = 43/396 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +E Y  R I   F+     ++ +     +L  +  V     +L           PT 
Sbjct: 3   MPVYEKYFARQIYGVFVFILFAVLALFIFFDMLGELGSVVGRYTTLVAFFH-VMLQAPTR 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + M   +E  I    G      +  +  +A+ L++  ++    
Sbjct: 62  VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALVTYLFGEF 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----------LYIKISKYNPNNT 169
           I PK     +++  +A  A   +     ++ +                ++ +    P+ +
Sbjct: 122 IGPKAEEYAQKVRLEALGATVSAGFRSGVWVKDRGPAKPDGTGGEVTRFVNVGALQPDQS 181

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS----------------- 212
           ++G+ I +               +     Q   LND    R                   
Sbjct: 182 IKGLRIYEFDSDYRLSSIRVADQARYQGHQNWQLNDVTETRFVEFPRKPGTVAPQDTVQA 241

Query: 213 ----------PISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP 262
                         + + +  +    +      S +++  +      L      +     
Sbjct: 242 VPGAPDALAPDFRGEQTKLPHQEMRSELTPQILSVLMVTPDRMATLDLFQ-YIRHLRDNK 300

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
           +  + Y     K++      ++   +++  A      R       +F  + +        
Sbjct: 301 QDTQRYEIALWKKVVYPFTVLVMMALALPFAYL--HARAGAVGLKVFGGIMLGLSFQLVN 358

Query: 323 SYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
           +   H    N  +  I    +     + L ++  ++
Sbjct: 359 NLFSHVGLLN-TWPAIFTAIVPGALYLALALVSLRW 393


>gi|327402663|ref|YP_004343501.1| permease YjgP/YjgQ family protein [Fluviicola taffensis DSM 16823]
 gi|327318171|gb|AEA42663.1| permease YjgP/YjgQ family protein [Fluviicola taffensis DSM 16823]
          Length = 373

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/373 (12%), Positives = 104/373 (27%), Gaps = 17/373 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI+R    +F      I+ +A V  I +R++       S   I+       +  
Sbjct: 2   LKILDRYIIRKFLSTFFFMLGIIMLLAMVFDIAERLSDFIEKQASFKAIVFDYYLNFLLY 61

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                +     +        M ++ E++ +  +G   I +I+P +  A +L +   +  +
Sbjct: 62  YGNTFSSMIVFIAVIWFTAKMAQDAEIIPMLFSGRPFIRIIRPYMIAATILMLLSLVLNH 121

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P+                         F   +   Y   +          I      
Sbjct: 122 FVLPRANRVRLDFEESFYRDRLLVENYNAEFPGNELVHYSTYNSEENMINDFVIERY-DS 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS---------------KDISIMKFK 224
             +      A++ S+    +   L D    + S                    ++    K
Sbjct: 181 QNRLIHFMKARTASVIPGVKRWRLTDVFERKVSYSDTSGTSKGEMESIIQKHQLTENHLK 240

Query: 225 SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
             TL     + +             L +            +  Y  E ++R +      +
Sbjct: 241 DTTLPYNVDDIAVRDNVVEAMTFRELSSFIAKEKAKGNPSVAMYEIELYQRSSYPFATYV 300

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
             LI +  + ++        I    + + I        +     +         L   +F
Sbjct: 301 LTLIGVSVSSRKKRGGIGINIAIGLLFVFIYIFAMKITTVAATTVGFPSVAAVWLPNVMF 360

Query: 345 CISSIFLLMIKKK 357
            I ++FL  I  K
Sbjct: 361 GILALFLYRIAPK 373


>gi|113868946|ref|YP_727435.1| permease [Ralstonia eutropha H16]
 gi|113527722|emb|CAJ94067.1| predicted permease [Ralstonia eutropha H16]
          Length = 375

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/364 (12%), Positives = 117/364 (32%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +  + R +  +     L ++       +++ + + +S   S N +L + G      L 
Sbjct: 2   ILQQALRRELAYTAGAVFLVMLTFMLTSLVIRILGMAASGKASPNDVLMLIGLATIGYLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   +++E+++  + G S   L+KPVL  A    +   +      
Sbjct: 62  ILLSATLFISTLIVLTRWYKDSEMVVWFSAGISLRELVKPVLQFAAPFIVLALLLGMFAW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P           + +     S +    F       Y+   +    +      +  +    
Sbjct: 122 PWANQQSALFRDRFEQRGVMSMIAAGRFIEPAKANYVLFIEGIDADMKHARNVFVANSEA 181

Query: 183 THKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA-NSST 237
                         ++    + +++ +G  +   P   D  I++F+ Y ++ ++    S 
Sbjct: 182 DKIGVALAHQGKFETMPNGDRLVVMENGRRYSGMPGQIDYRIVEFERYAVKVDNKAPESE 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             L    ++   L+                   E   R++  +    F +I+I  A    
Sbjct: 242 AKLPPKSRDTIELIR----------NPTRENLGELIWRISLPILAFNFVMIAIPLAY--- 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  +  +  P+  ++ I        +     +      +    +     +    LL+ + 
Sbjct: 289 VNPRLGRYTPLVFAVLIYLTYSNLINLTQSWVRSGAIPFWLAWWPIHLAVFLGALLLFRY 348

Query: 357 KYTK 360
           +  +
Sbjct: 349 RQNR 352


>gi|115352567|ref|YP_774406.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria AMMD]
 gi|115282555|gb|ABI88072.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria AMMD]
          Length = 363

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/363 (14%), Positives = 123/363 (33%), Gaps = 15/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  L + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPLILLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFIEKMSPDQSKVQNVFVTSTEN 181

Query: 183 THKIY---YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                   +          + ++L DG  +  +P   +  IM+F+ Y ++  S   + + 
Sbjct: 182 GKVNIVVSHTGHTETKDGDRFVVLEDGRRYDGTPGQPNFKIMEFQRYGVKITSTPVTNVP 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRAL 298
              +      L NP  +N            +EF  R    L  +   ++ I  +      
Sbjct: 242 TTNSTPTPDLLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIPLSYQNPRR 290

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R    +  + I L+ S  +    + I          +  L++ +  I ++   +  +  
Sbjct: 291 SRTINLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHVVVAAIVALIFWLRVRNR 350

Query: 359 TKI 361
             +
Sbjct: 351 PLL 353


>gi|282880317|ref|ZP_06289031.1| putative membrane protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305819|gb|EFA97865.1| putative membrane protein [Prevotella timonensis CRIS 5C-B1]
          Length = 391

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 107/353 (30%), Gaps = 4/353 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  + YI++    +++ S   I+ IA V    + ++  +     +  I+       IP  
Sbjct: 32  KRIDWYIIKKFIGTYIFSIALIIAIAIVFDFNENLSKFTEYKAPVRAIIFDYYANFIPYF 91

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ +  TG S   L++P +   IL++   F     
Sbjct: 92  SNLFSPLFVFIAVIFFTSKLAGNSEIIAMLATGISFKRLMRPYMISCILIASVSFFLSAY 151

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +      +     S  +          +       N      G  +   +D
Sbjct: 152 VIPHGTVVRQNFDNLYKNNKKRSAADNVQLQVDKGTIAYIQHYDNKTKRGYGFSLDKFKD 211

Query: 181 TQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +      A       I   +    +   ++     + + I+    +   +  E  +   
Sbjct: 212 KKLVSHLTAMEIQYDTIADAKYHWTVTGWKIRELKGLREHITSGAERDTVIMMEPMDLVY 271

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +        L        N     +  Y+ E+HKR+       I  +I +  + ++ 
Sbjct: 272 SKGQQETFTSPELREYISKQVNRGSGNVVQYQVEYHKRIASSFASFILTIIGLSLSARKR 331

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                  +        +   +    +      +  P     +   LF + + F
Sbjct: 332 KGGMGLYLGLGLALSFLYILLQTISATFAINADAPPMLAAWVPNILFSVVAYF 384


>gi|254360524|ref|ZP_04976673.1| possible inner membrane protein [Mannheimia haemolytica PHL213]
 gi|261492350|ref|ZP_05988912.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496136|ref|ZP_05992544.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153091064|gb|EDN73069.1| possible inner membrane protein [Mannheimia haemolytica PHL213]
 gi|261308238|gb|EEY09533.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312033|gb|EEY13174.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 369

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/363 (14%), Positives = 131/363 (36%), Gaps = 14/363 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I +S L     ++ I +  Q+++ ++   S     ++++ + G  +PT+  
Sbjct: 2   ILSRYLTKEIFKSQLAILFILLLIFFCQQLVRVLSSAVSGKVPADLVVSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L      +E+ ++   G  +  L+K  +FL+I  +     +   + 
Sbjct: 62  LMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLVKVAMFLSIFTTALAVYNVFWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   +   ++ A+A+    F+ L    F      +       N +     +F  + +   
Sbjct: 122 PWAINKQSEMLAEAKANPRFAALSAGQFMSAGGYVLFIDKIENNSLNDIYVFQPEQQKKN 181

Query: 183 THKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
              +  A+SG++       Q + L + +    +P S D  I  F++Y+      +  +  
Sbjct: 182 KPSVVVAESGTLQGLPNGDQVLTLAESKRFEGTPQSADFRISHFENYSAYLGYQDVESDE 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                 +   L+                 ++E H RL   L   +  L+++  +      
Sbjct: 242 KLVQRADFKKLMET----------KTPEAKAELHWRLALILAVPLMALLAVPMSSVNPRQ 291

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP-YYIPILYLFLFCISSIFLLMIKKKY 358
            +  K+ P  +   I F +           + N    +P++ +    +  I      K  
Sbjct: 292 GRFAKLLPALLLYLIYFLLQSSLKSSGASGKLNAEVLMPLVSVAFLVLGVILNAWDSKFM 351

Query: 359 TKI 361
           +K+
Sbjct: 352 SKL 354


>gi|148556807|ref|YP_001264389.1| permease YjgP/YjgQ family protein [Sphingomonas wittichii RW1]
 gi|148501997|gb|ABQ70251.1| permease YjgP/YjgQ family protein [Sphingomonas wittichii RW1]
          Length = 364

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 113/355 (31%), Gaps = 3/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
           ++  LY+ R     F      +V +   + +L     + +        L        P +
Sbjct: 9   RTMTLYMARMFLVRFAAVLAALVIVLMALDLLGESGDILAYPGNGDAQLWLYVTLRTPQI 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   + T     ++N+N+E++ +   G S   ++ P++  ++ + I  F     
Sbjct: 69  IARFLPFAALLATLITFVTLNQNSEIISMKAAGISAHQILAPLVVASLGVGIVSFTFNER 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +  +  +T+          +          +  D D  I  +          +  V   D
Sbjct: 129 VVARATATLTAWQDADYGPIPRDRGIVPNIWVRDGDDLIHATAVRGRGAQARLDSVTIYD 188

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               ++     G   +         G           + +  F  +     +   +   +
Sbjct: 189 RDGGRLISIIKGERAVQAAGGWRITGASRFDVAKGVTLRLAGFD-FAKGVTADRFTLANV 247

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
               +++  L      + +         R+    +L+  L  V+  L++ VAA   A   
Sbjct: 248 DPASKSIVQL-RTAIADLDAAGRPTGPLRAGLWHKLSGPLSAVLMPLLAAVAAFGLARSG 306

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  I ++L  ++ V   F+  +  +   P ++     FL  +     ++I+
Sbjct: 307 HLFIRAVIGMALGFAYFVADNFALAMGNLGAYPPFLAAWAPFLLFLLIGETVLIR 361


>gi|51246435|ref|YP_066319.1| hypothetical protein DP2583 [Desulfotalea psychrophila LSv54]
 gi|50877472|emb|CAG37312.1| hypothetical protein DP2583 [Desulfotalea psychrophila LSv54]
          Length = 351

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 61/318 (19%), Positives = 116/318 (36%), Gaps = 9/318 (2%)

Query: 45  SLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVL 104
            L IL   S    P +     P    +  T   + ++ + ELL +   G S   ++ PV 
Sbjct: 3   DLQILSAYSPTSFPNIFLYTLPMASMLGITICFSRLSTDMELLALKAGGISIYKILPPVF 62

Query: 105 FLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY 164
            +A  +++  F     + P     +K+LS +         ++ + F     D+ I + K 
Sbjct: 63  LVASAITLIAFYFSTQLIPASELAMKKLSYQILKEKIDQGIQAHKFTDAMGDIVIYVDKV 122

Query: 165 NPNN-TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAI----ILNDGEVHRKSPISKDIS 219
           +        +++ D R  +   I  A+SGS+  + + +     L DG +HR      +I 
Sbjct: 123 DKETGDWHNVWVSDMRGVKQPTITMARSGSMKSNSKQMSITIKLTDGSLHRPEEQGTEII 182

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
             K  +  +  E+   +  +L     ++  LL       N   +    Y  EFHKRL   
Sbjct: 183 TFKDYTINMPLETGGKNIFMLHKRLLSMPELLEQAKRWGNESKKRGRIYLIEFHKRLILP 242

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI-EQNPYYIPI 338
           +  ++   +++         R  KK   I + L I    +   +             IP 
Sbjct: 243 IGCLMLSFLALPLGL---QARPGKKAIGIPVGLGIFIVYYILHTVGKELAEAGTVPLIPA 299

Query: 339 LYLFLFCISSIFLLMIKK 356
           L+L       + +  I +
Sbjct: 300 LWLPNVLFFLLAIFWIYR 317


>gi|237807325|ref|YP_002891765.1| permease YjgP/YjgQ family protein [Tolumonas auensis DSM 9187]
 gi|237499586|gb|ACQ92179.1| permease YjgP/YjgQ family protein [Tolumonas auensis DSM 9187]
          Length = 367

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 130/366 (35%), Gaps = 20/366 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI +   ++ L   L ++ I    Q ++ +   +  +   +++ ++    IP +  
Sbjct: 2   IVFRYIFKETLKTQLSILLILLLIFTSQQFIRILARAADGSIPSSLIGQMMLLNIPYMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +  ++E+ ++   G     +++  L LA+L ++   ++   + 
Sbjct: 62  LLLPISLFIAILFAHGRLYADSEMTVLRAIGVGPSYIMRISLVLALLTTVVATVNTMWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR-LDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           P  R    QL   A+       LE   F       L   +     +        +  R  
Sbjct: 122 PMAREKQSQLLDAAKADPLSIPLESGRFLSLDGGHLTAYVEDVQDSGRSLQRIFLLQRSP 181

Query: 182 Q--THKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 I  A SG +  D      + L +G+ +  +P S   SI  F  Y  Q +  +  
Sbjct: 182 DPAEAAIIVAASGHLTNDAQGTPWVTLANGKRYAGTPPSTQFSIANFAEYKAQLQRKDIE 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               KA     S L N             +   +E+  R+   L   +  LI++  A   
Sbjct: 242 PSTPKARALPSSALYN----------STDKKQIAEWQWRVVLPLSIPLMTLIAVPLAV-- 289

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLMIK 355
            +  ++ +   +  ++ +    F   S     IE+     +P LY+     + +F + + 
Sbjct: 290 -VNPRQGRYAKLLPAVMLYLSYFLLLSAGQSAIERGQLPEMPGLYIIPVLFTLLFAVPMN 348

Query: 356 KKYTKI 361
            K T++
Sbjct: 349 IKSTRL 354


>gi|218296305|ref|ZP_03497061.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
 gi|218243377|gb|EED09907.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
          Length = 347

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 119/342 (34%), Gaps = 14/342 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+LR     FL     IV +     + + +  + +       LL    Y  P  
Sbjct: 1   MKTLDRYLLREALSLFLGGLAAIVLLFLAGAVYEVLAPLVAKGADPYTLLLYLLYRAPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  +      +L+ M  ++EL  +   G +R  ++ P L LA+L+++ +F+    
Sbjct: 61  LVRGAPVAYLFTLLLLLSRMAEDSELKALLALGVARERVLLPFLLLALLIALAVFLLGES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK  +  + L  +  L    + L     F+      + + +   +       I   R 
Sbjct: 121 LVPKALAAGQDLLRRQVLERPRALLTPGTTFQDARGRVVYVGEVAGDR------IGKLRV 174

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               ++  A+ G        +++ +G+        +  ++ +F+   +  +         
Sbjct: 175 LSQEEVLLAERGRFQEG--VLLVEEGQRVTYE-GDRPRTLTRFQKGEILLKDLTFEPWQN 231

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            AN   L  L                   + +H+R  +    V+F L ++  A       
Sbjct: 232 PANRMTLGEL-KKEVERLRALGVKAGLEATTYHRRYAEPASAVVFALFAVGLAFYLLGGS 290

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           +        + ++I    ++    +   + +     P+L  +
Sbjct: 291 RSLGW----VGVAILTFFYYATWSVGRIMGEQNALDPLLAAW 328


>gi|86158886|ref|YP_465671.1| permease YjgP/YjgQ [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775397|gb|ABC82234.1| permease YjgP/YjgQ [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 360

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 111/356 (31%), Gaps = 13/356 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +FL++   +V I   +  +      + +   L  +L++  Y    V+ 
Sbjct: 2   ILFRYVARRMLGAFLVALAGVVGIYLAVDFVDNAAAYTGAGW-LPAVLQLYAYKAAGVVY 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           MV P    +      +   +  E   +   G     L  PVL + +L    L +  +++ 
Sbjct: 61  MVAPAALILGAGIATSMFRQTREYTAMRAVGLGPWRLAVPVLAVTLLAGGVLVVLNDVVG 120

Query: 123 PKCRST------IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            +           +            +   +  F  +D      +    P+   + + + 
Sbjct: 121 VQAAERAEEITAHRFARGGNLRRFLAAREPKRWFRGVDGKRVYHLRGNLPDGGFERVTVY 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD-ISIMKFKSYTLQTESANS 235
           +             +  +  D +A IL D E     P     +   + K Y         
Sbjct: 181 ELS-EAFTLARRIDAARMHPDGRAWILEDVEDRTFRPDGSMALERAERKRYAFDEPPDAF 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           + I  K +    S L+           + +  ++ E + RL      +      +  A  
Sbjct: 240 AVIAGKPDQMRWSTLIRQ-IGIRKRLGQPVTEFQLERYDRLAYPFAGI--PGALLALALA 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               R+      +  ++ ++  +FWG   +   +  +    P +  +   +  + L
Sbjct: 297 LRRDRKGHLSAALLEAVGVT-LLFWGMQGVSSALGLSGRVAPWVASWAPNVVFLAL 351


>gi|294055919|ref|YP_003549577.1| permease YjgP/YjgQ family protein [Coraliomargarita akajimensis DSM
           45221]
 gi|293615252|gb|ADE55407.1| permease YjgP/YjgQ family protein [Coraliomargarita akajimensis DSM
           45221]
          Length = 382

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/379 (15%), Positives = 123/379 (32%), Gaps = 25/379 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRIN-LVSSSTESLNILLKISGYLIPT 59
           +     ++ + I  + L++    +F+      ++ +  LV++        +K+ G LIP 
Sbjct: 2   LNLLHRHVFKEIAVAILLAMGLFIFVLLTGNAIRDVAALVAAGKLDAMTFIKLMGLLIPY 61

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V     P      T   L  ++   E+  + + G S   +  PV F+A +  +   +   
Sbjct: 62  VAAYALPLGILTGTLMALGRLSSQREITAMKSAGLSLYQIASPVFFIAFIAMVLSLVVNL 121

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
              P+ +S  K++ A         ++EE  F        I +  ++              
Sbjct: 122 DFAPRAKSAFKEMLASTISENPVKFIEEKKFITGFPGYVIYMGDHDGGLMKDFWVWELDD 181

Query: 180 DTQTHKIYYAQSGSIDLDRQAIIL----NDGEVHRKSPI------SKDISIMKFKSYTLQ 229
             Q  +   A+SG +D DR+A  L     +     +          +D+  + F+     
Sbjct: 182 RKQVTRFVRAESGELDYDREANELVLRVYNATAELRDDDAPETLLGEDLQTIFFQETEFA 241

Query: 230 TESA----NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE--------TYRSEFHKRLT 277
                      T  +K  + N + L+           +  E          + +  K   
Sbjct: 242 LPLERLFGQQKTRHVKIKNMNFAQLMEVREAALQAEAQSEEPGISKQRMQAQVQIQKNCA 301

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
                    L  +  A +         +    I     + +    S++  +IE  P    
Sbjct: 302 MAFSTFSLALFGVPLAIQVGRKESYANLAIALIIAMTYYFLMIVVSWMEDRIELRPDL-- 359

Query: 338 ILYLFLFCISSIFLLMIKK 356
           +++L       I L +I++
Sbjct: 360 LIWLPNILFQGIGLYLIRR 378


>gi|83952307|ref|ZP_00961039.1| permease, YjgP/YjgQ family protein [Roseovarius nubinhibens ISM]
 gi|83837313|gb|EAP76610.1| permease, YjgP/YjgQ family protein [Roseovarius nubinhibens ISM]
          Length = 363

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/348 (11%), Positives = 99/348 (28%), Gaps = 14/348 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y  R    + +        +  +I ++  +            +L+I    +P    
Sbjct: 2   ILHFYFARKFLWTLIGIATVFSVLLGLIDLVDELQDFPD--LPFFDVLEIVLLNLPHANY 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   + R++EL+++  +G S +  +   + +A L+ +      N + 
Sbjct: 60  EILPLVMILATVALFVRLARSSELVVLRASGRSALAGLAGPVAVAALVGLVGVTMFNPVV 119

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR-----LDDDLYIKISKYNPNNTLQGIFIVD 177
                    L               +          +    I      P+ +        
Sbjct: 120 AASAKRYNDLVNGHSGLGDNVLAISSEGLWLRQGTEEGQTVIHAKSATPDLSTLFGATFT 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQ--TESAN 234
           S   +   +    + S +L +    L+D ++    +  + + S       T++       
Sbjct: 180 SFTPEGDPMRRLTAESAELGQGQWHLSDVKIWDLANTDNPEASARTQDRLTIRAALTRDR 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K     +  L     +           Y   F   L Q LF +   L+      
Sbjct: 240 IIDSFGKPEYIPIWDL-PAFIDQLETAGFSARRYAVWFQMELAQPLFLIALVLVGAAF-- 296

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
                R       +  ++ + F + +  ++    + +N     +L  +
Sbjct: 297 TMKHARLANTGTSVLAAVMLGFTLHYIRNFAQ-VLGENGQIPILLAAW 343


>gi|307728896|ref|YP_003906120.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1003]
 gi|307583431|gb|ADN56829.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1003]
          Length = 365

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 120/362 (33%), Gaps = 16/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ +     +++ +   +        +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAAQGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++  ++G S    IKP+   A  + I +     +  
Sbjct: 62  IMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGMFATPIIILIMFFVFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F        +   +    +      +  +    
Sbjct: 122 PWSNQQSKLIRARFQQRDEVSLLAPGQFRESAASHRVFFIEKMSPDQGHVENVFVTSTEN 181

Query: 183 THKIYYA----QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + +     + ++L +G  +   P   D  IM+F+ Y ++ ES      
Sbjct: 182 GKLNVVVSKNGHTETHKNGDRFVVLENGRRYDGEPGHPDFRIMEFERYGVRIESQPVVNT 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRA 297
                   L+ L NP   N            +EF  R    L  +   L++I  A     
Sbjct: 242 PTTTGTPTLTLLRNPTKENL-----------AEFAWRAGLPLIAINLMLLAIPLAHQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    S+I          + IL++ +  I +    +  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQSWIEQGKMSFGVGLVILHVIVAGIVAFIFWLRVRN 350

Query: 358 YT 359
             
Sbjct: 351 RP 352


>gi|301310576|ref|ZP_07216515.1| putative membrane protein [Bacteroides sp. 20_3]
 gi|300832150|gb|EFK62781.1| putative membrane protein [Bacteroides sp. 20_3]
          Length = 361

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 110/353 (31%), Gaps = 2/353 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ I+ V  I ++I+   +    L  I++      IP 
Sbjct: 5   LKRIDWYIIKQFLGTYVFAIALIISISVVFDINEKIDKFLNPDVPLKAIIVDYYLNFIPY 64

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +   +E++ +  +G S   L+ P    A +++I  FI   
Sbjct: 65  FANLFSPLFTFIAVIFFTSKLADRSEIIAMLASGMSFRRLMLPYAVSATIIAIVTFILNA 124

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I P      +       +        +N    ++  +      Y+  + +   F ++  
Sbjct: 125 YIIPPAN-ETRIDFQNKYIRNKKVDYVKNAQLEIEPGIIAYFDSYDARSNMGYRFSLEHF 183

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +                    + D  +     + + I     K  TL    ++    V
Sbjct: 184 EDKKLISRLTAKSIKYDSLYQWTVIDYMIRDFDGMREHIFQGSRKDTTLTIVPSDFLISV 243

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                     L              ++T++ E+HKR    +   I   I    + ++   
Sbjct: 244 NDCETMTTPELNTYINRQKKRGIGNIQTFQIEYHKRFATIMAAFILTSIGASLSSRKIKG 303

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                I                 S        +P     +   ++   +IFL 
Sbjct: 304 GMGMNIGIGLALSFSYILFMTVTSTFAINGYVSPAVAAWIPNIVYTFIAIFLY 356


>gi|82701537|ref|YP_411103.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
 gi|82409602|gb|ABB73711.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
          Length = 354

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/358 (12%), Positives = 119/358 (33%), Gaps = 4/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+   +     ++   ++ +   + +L +++ V   T S+      +  L+P  
Sbjct: 1   MTIIYRYLGLQVLMGLGIATAVLLPLFGFLDLLDQLDDVGKGTYSVKDAFLYTALLLPRR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + PF   M     L  +   +EL  +   G S + +    + + I+L +F+ + +  
Sbjct: 61  FIQLAPFIALMGNVTALGRLAVGSELTALRGAGVSPLGISLAPVVVGIILLLFITVLDQF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ +      S  A L  + +  ++   +  D+   ++I +         I I+   D
Sbjct: 121 VAPQFQQK-AISSRAAALEKSAALGQQLGIWTRDERNILRIGEMLHARRAANIEIMHFDD 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                 Y     +  ++     L D  +   +  + +I   +   +    +  + ST+  
Sbjct: 180 NGFLLRYTYAKYADIINEGLWELRDVVIKTFNGNAMEIVSRESVPWEPFLKEEDISTLTK 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                + + L   + +      +    Y     ++    L  +   L+SI          
Sbjct: 240 SPESLSPAELF-LHVHFLRATGQESGAYELALWRKAGGALTTIAMLLLSIPFVFGSVRAG 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
              ++    +     +      +     +  NP    +  L    + ++    +++ +
Sbjct: 299 LGNRLVVASMLGISVYLFDQITANAGLLLHLNPALSAL--LPGGVLIAVAYFWLRRIF 354


>gi|262274979|ref|ZP_06052790.1| putative permease [Grimontia hollisae CIP 101886]
 gi|262221542|gb|EEY72856.1| putative permease [Grimontia hollisae CIP 101886]
          Length = 366

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 116/360 (32%), Gaps = 21/360 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   ++ L     +  + +  + ++ +   +  +     +L + G  +P++  
Sbjct: 2   IIVRYLIRETVKTQLAVLFVLFLVFFSQKFIRVLANATDGSIPGGDVLTLVGLYMPSMGM 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LAI+       +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEITVMNATGIGNKFLIRAALYLAIITGSVAAFNALWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFS--YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P       ++    +           +         +            L  +FI     
Sbjct: 122 PWANDKEVKVMESLEADTGLELLVQGKIQTTPDGQAVVYVNDITGDGKDLHKVFIAQPVP 181

Query: 181 TQ--THKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                  +  A+ G I      RQ + LN+G  +   P   D ++  +++Y +       
Sbjct: 182 RGTLRPNVVVAEKGFISELPDGRQVLDLNNGIRYEGVPTLLDYTVTDYENYQVLIGQREV 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  +      L+N                ++E   R++  L   +  +I       
Sbjct: 242 RQKNRDWDAMPTQILVNE----------SSPRAQAELQWRISLVLCIPLMTMI---VVPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI-PILYLFLFCISSIFLLMI 354
            A+  ++ +   +F ++ I    F   S     +E+        L+        + L++I
Sbjct: 289 SAVNPRQGRFAKLFPAVLIYLAYFLSISAAKSAVEEGKLPAEIGLWSVNLIALLVALMLI 348


>gi|265763912|ref|ZP_06092480.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256520|gb|EEZ27866.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 365

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 124/362 (34%), Gaps = 7/362 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  +LYI++    +++ +   I+ IA V    ++++     +   + I+       IP  
Sbjct: 8   KRLDLYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKFMERSAPWSAIIFDYYMNFIPYF 67

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ + +TG S   +++P +  A +++I  FI  + 
Sbjct: 68  ANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMISAGIIAISTFILGSY 127

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+   T      K       +Y+           +    +  + N T     +    D
Sbjct: 128 VIPRGSVTRLDFEDKYVKKKKTTYVHNIQLEIDTGVIAYIDNYQDYNKTGNRFSLDKFVD 187

Query: 181 TQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +      A+S + D        + D  +     + + I       + +  E A+   + 
Sbjct: 188 KKLVSHLTARSITYDTTAVNKWTIKDYMIRNLDGLKETIVRGDKMDFIIPMEPADFMIMR 247

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +        L              ++ +  E+HKR+       I  +I +      +  
Sbjct: 248 NQQEMLTSPQLSAYIDKQKQRGIANIKEFEIEYHKRIAMSFASFILTVIGVSL----SSR 303

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKKY 358
           + +  +             +  F  +      N    P++ +++   + ++    + +K 
Sbjct: 304 KTKGGMGLHLGIGLGLSFSYILFQTVASTFAVNGNMPPMIAMWIPNLLYALIAFYLYRKA 363

Query: 359 TK 360
            K
Sbjct: 364 PK 365


>gi|90423815|ref|YP_532185.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
 gi|90105829|gb|ABD87866.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
          Length = 362

 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 104/357 (29%), Gaps = 11/357 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
            +   Y       + L     +  +   +  +  +       + S  ++++ S Y +P +
Sbjct: 4   NTLSRYFAGRFVTAALAVFAGLFVLLVFVDYIDLLRRAGGRPSISALLIVQTSVYRVPQL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + PFC  +       +++R  EL++    G S    + P L+ A+ L +F  +  N 
Sbjct: 64  LERLMPFCILIGAMTCYLALSRRLELVVARAAGISAWQFMAPALWSALALGVFATVVFNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL----YIKISKYNPNNTLQGIFIV 176
           +    +   KQ+ A+     + S  + + F+           I  ++      L     V
Sbjct: 124 MSANMQERAKQMEAEMFGDSSGSLQDASGFWINQVTTEGQAIINAARSQQQGALLTGLSV 183

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              +         ++    L+       +   +       D  +    +       A   
Sbjct: 184 FRFEPDFSFSERIEAREATLEPGFWRFKNLRRYTLDGPPVDQDVFLLPTT---LTLAQVR 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                    +   L      +          YR +FHK L +        +++   +   
Sbjct: 241 NSFSTPETVSFWQL-PGYIRSSESSGFATAGYRLQFHKLLARPFLLAAMVMLAASVSL-- 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              R       +   +   F ++          +    +         C+ S+   +
Sbjct: 298 RFFRFGGVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGSLAGFL 354


>gi|300312407|ref|YP_003776499.1| permease [Herbaspirillum seropedicae SmR1]
 gi|300075192|gb|ADJ64591.1| permease transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/375 (11%), Positives = 119/375 (31%), Gaps = 19/375 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y    I RS L +    + +    +++ ++  V  +   L   +      +P  
Sbjct: 1   MRVIQRYFTSEITRSVLFALAAFLALFAFFEMMGQLEQVGRNGYKLQQAVFYVLMGLPGN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + T   L+ +   +E  I+  +  S     + +  + +  ++   +   +
Sbjct: 61  VYELMPTAVLIGTIYTLSQLAARSEFTIMRVSSMSTGQAARVLARIGVGFAVLTIVFGEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----------LYIKISKYNPNNT 169
           I PK     ++L  +AQ A   S     ++ +                +I I    P+  
Sbjct: 121 IAPKATEWAEKLKLQAQGASLSSQFRSGMWAKDVIRDHGLEGNVVGSRFINIRTVQPDGR 180

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT-- 227
           ++G+ + +                +        L+D      +  S        K+    
Sbjct: 181 IEGVKLYELDSDFHMARMVTAKAGMYDGNHQWTLSDVVQSDFTGGSDRKITEPVKTVKSA 240

Query: 228 ----LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
               +   +    +++    D+  ++ L     +     +  + Y   F K++   L   
Sbjct: 241 QLTLVSEVTPEILSVLFADPDRMSAYDLLAYTKHLEANNQRTDRYEIAFWKKIVYPLSIF 300

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY--IPILYL 341
           +   +++  A                I + + F +       +  +   P +    +  L
Sbjct: 301 VMLALALPFAYLHFRAGGVSLKIFTGIMIGVCFQLINSLFSHLGLLNTWPAFVTAALPSL 360

Query: 342 FLFCISSIFLLMIKK 356
               +++  L  +++
Sbjct: 361 LFMALAAGALWWVER 375


>gi|296283030|ref|ZP_06861028.1| permease [Citromicrobium bathyomarinum JL354]
          Length = 407

 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 121/361 (33%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R      +        +  + Q+L+    VS+    + ++ ++ G L+P   
Sbjct: 5   SRLDRYIFRLTIVPMIGVFALAATLLMLEQMLKLFRFVSTEGGPVGVVFQMLGTLLPDYA 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      +  ++EL ++   G     L++    + + L          +
Sbjct: 65  VLAIPLGLLLGTLFAFRQLALSSELDVMRAVGLGYGRLLRVPFAITLALMAVNAAIVFYV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRD 180
           +P  +   ++L    +     + ++   F  L D + ++I +   +   L+GIF   + +
Sbjct: 125 QPVSKYYYEELQFDLRSGALGASIKVGEFTTLADRMALRIEESEDSGRKLKGIFARINAE 184

Query: 181 TQTHKIYYAQSGSI-----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                   A+ G       + D   + L+DG + +  P  +   ++ F  + L  +    
Sbjct: 185 DGQTLSISAREGRFLSTSDNPDTIILRLSDGTIVQ-DPPGETPRVLSFTEHDLPIDLPAI 243

Query: 236 STIVLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                +     +  L  LL    ++     + L + ++ F+ R+ +    +   L+++  
Sbjct: 244 EQFRARGEAEREYILPELLRMGWSDTTTEAQRLGS-QASFNYRMVELAMMLFMPLLAVAL 302

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           A           +    I +     V             +P         +F    ++  
Sbjct: 303 AIPPKRSTSALGVFVAVILVVAYHKVNQYMQDFAALGRVDPTLGLWGPFAIFAGLILWWY 362

Query: 353 M 353
            
Sbjct: 363 W 363


>gi|255009350|ref|ZP_05281476.1| hypothetical protein Bfra3_09423 [Bacteroides fragilis 3_1_12]
 gi|313147107|ref|ZP_07809300.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135874|gb|EFR53234.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 365

 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 123/362 (33%), Gaps = 7/362 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTV 60
           K  +LYI++    +++ +   I+ IA V    ++++     +   + I+       IP  
Sbjct: 8   KRLDLYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKFMERSAPWSAIIFDYYMNFIPYF 67

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ + +TG S   +++P +  A +++I  FI  + 
Sbjct: 68  ANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMISAGIIAISTFILGSY 127

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+   T      K       +Y+           +    +  + N T     +    D
Sbjct: 128 VIPRGSVTRLDFEDKYVKKKKTTYVHNIQLEIDTGVIAYIDNYQDYNKTGNRFSLDKFVD 187

Query: 181 TQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +      A+S + D        + D  +     + + I         +  E A+   + 
Sbjct: 188 KKLVSHLTARSITYDTTAVNKWTIKDYMIRNLDGLKETIIRGDKLDSIIPMEPADFMIMR 247

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +        L              ++ +  E+HKR+       I  +I +      +  
Sbjct: 248 NQQEMLTSPQLSAYIDKQRQRGIANIKEFEIEYHKRIAMSFASFILTVIGVSL----SSR 303

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKKY 358
           + +  +             +  F  +      N    P++ +++   + ++    + +K 
Sbjct: 304 KTKGGMGLHLGIGLGLSFSYILFQTVASTFAVNGNMPPVIAMWIPNLLYALIAFYLYRKA 363

Query: 359 TK 360
            K
Sbjct: 364 PK 365


>gi|163788640|ref|ZP_02183085.1| hypothetical protein FBALC1_10402 [Flavobacteriales bacterium
           ALC-1]
 gi|159875877|gb|EDP69936.1| hypothetical protein FBALC1_10402 [Flavobacteriales bacterium
           ALC-1]
          Length = 340

 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 111/340 (32%), Gaps = 1/340 (0%)

Query: 19  SCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLT 78
             L  + I   + + +++  +  +      +             ++ P    +      +
Sbjct: 1   MLLLFIPIGITVDLAEKVGKILENKAPFGEVTAYYVDFTIYFANLLFPLFLFLSVIWFTS 60

Query: 79  SMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQL 138
            +  NTE++   ++G S    ++P L  A +++IF  +    + P       +   K   
Sbjct: 61  KLANNTEIVAFLSSGVSFTRFLRPYLIGATVVAIFALVLGMYLSPMASKGFNEFKFKYLK 120

Query: 139 ALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI-YYAQSGSIDLD 197
                    +++ +++D+ YI +S ++P +     F  +  +    K   +A++      
Sbjct: 121 KNKQVQQTRDVYQQINDNDYIFVSSFSPKSKTGMKFTYEHIEGNELKYKIFAENIRYIEK 180

Query: 198 RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
                L            + I   + K      E  + + +   A  ++   LL+     
Sbjct: 181 DSTYRLTTYVKRSFENGVERIEKERSKDMHFPFELEDLTPVQYAAETKSYGELLDFIAAE 240

Query: 258 PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG 317
                  +  Y     K+ +  +   I  +I++  +  +        +        I   
Sbjct: 241 KRRGSPNIGRYEVVKQKKWSLPVSIFILTIIAVAVSSVKRRGGMGVNLAFGIAIAMIYVF 300

Query: 318 VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +   F  +  +          L  FLF I +I+LL   K+
Sbjct: 301 LDKIFGVMAEQANFPAVIAVWLPNFLFGILAIYLLQNAKR 340


>gi|217978371|ref|YP_002362518.1| permease YjgP/YjgQ family protein [Methylocella silvestris BL2]
 gi|217503747|gb|ACK51156.1| permease YjgP/YjgQ family protein [Methylocella silvestris BL2]
          Length = 361

 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 101/352 (28%), Gaps = 4/352 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y         L   + I  + +V+  ++ +   +     S   +  ++    P+  
Sbjct: 5   TLGRYFSARFLTLILAVFVTICGMVFVVDFVEMLRRTTDLPDASPRSVALLAMLRAPSAS 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PFC    +      + R  ELLI    G S    + P + +AI++ I   +  N +
Sbjct: 65  EQLMPFCVLCGSMAAFLDLTRKLELLIARAVGVSVWGFLVPPIAIAIVIGIGSVMLFNPV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
               +    ++  +    LT    + +++ R        I K    +         +   
Sbjct: 125 SAAMKQRADKIEVEIFGRLTQQNADADIWIRQKSVDGDAIIKARTMSRDGSRLTKPTVYI 184

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                 +      +  + +  +   E  R     ++               A  +   + 
Sbjct: 185 YDDHDKFEAEVEAEHAQLSDGVWRFEQARILMPGEETIETSVYLLASNLTPAQVARGPIS 244

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                   L +      +        Y+ +F   L + L  V   LI+   +      R 
Sbjct: 245 PQSVAFWDL-DAARRQTDRAGLDSTAYKLQFQSLLARPLLFVAMVLIAAAFSL--RFFRF 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                 +   ++  F ++     +           P+       I+S+   +
Sbjct: 302 GGIEKMVGGGVAAGFVLYVATKLVGDLGGAGLVSAPVAAWSPAVIASMLGAL 353


>gi|91215236|ref|ZP_01252208.1| hypothetical protein P700755_13102 [Psychroflexus torquis ATCC
           700755]
 gi|91186841|gb|EAS73212.1| hypothetical protein P700755_13102 [Psychroflexus torquis ATCC
           700755]
          Length = 337

 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 118/340 (34%), Gaps = 7/340 (2%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
             + I  ++ + ++I+ +  +   +  +L   G        ++ P    +      + + 
Sbjct: 1   MFIPIGIIVNLSEKIDDIKENEVPIEEVLVFYGNFTIYFANLLFPIFLFLSIIWFTSKLA 60

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
            NTE++ I ++G S    ++P L  A L+     +    + P       +   +      
Sbjct: 61  NNTEIIAILSSGISFSRFLRPYLIGATLVCGIALMFTMYLVPNASQGFNEFKYQYFKKGK 120

Query: 142 FSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSRDTQTHKIYYAQSGSIDLDRQA 200
            S   +N++ +++D+ +I  + +  +      F +      +      A     +     
Sbjct: 121 QSQETQNVYRQVNDNEFIFATNFQTSTGTARNFTLEHFEGQEMTFKISASRLKFNAKDST 180

Query: 201 IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNY 260
             LN+ E    +     I         L  E    + +   A   +   L +        
Sbjct: 181 YTLNNFEKRTINEREDVIERQSSLDTILPFEFGELTPVEYIAETLDYGELKDFITTEKRR 240

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
               + +Y+   +KR +  +   I  +I++      A+ R+      + I + I+F   +
Sbjct: 241 GSANISSYQIVAYKRWSVPVSAFILTIIAVSV---SAMKRRGGMGANLAIGIVIAFAFIF 297

Query: 321 G---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
               F  I  K   +P         LF + +I+LL+  K+
Sbjct: 298 LDKVFGTIAEKSTFSPLIAVWFSNILFGLLAIYLLIKAKR 337


>gi|15964906|ref|NP_385259.1| hypothetical protein SMc00583 [Sinorhizobium meliloti 1021]
 gi|307300976|ref|ZP_07580745.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
 gi|307317711|ref|ZP_07597149.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
 gi|15074085|emb|CAC45732.1| Hypothetical, transmembrane protein [Sinorhizobium meliloti 1021]
 gi|306896473|gb|EFN27221.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
 gi|306903931|gb|EFN34517.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
          Length = 360

 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/353 (14%), Positives = 114/353 (32%), Gaps = 10/353 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y  +   R+     + I  + ++I   +  + +S+    +++  L ++ + IPT+
Sbjct: 4   NTLGRYFFKRYARTTFWFLVGIFALIFIIDFSELTSRMSNLPHYTVSGALLMTTFRIPTI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF         L S+NR  EL++    G S    ++P +  A+L  +   +  N 
Sbjct: 64  LQQTVPFVALFAAMAALISLNRRYELVVTRAAGISVWQFLRPFVVGALLFGVLAVVVINP 123

Query: 121 IEPKCRSTIK--QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           +        +  +    +  +   + +          D  I         T      V  
Sbjct: 124 LAAWGTKKAEALEAEWGSTRSAAANSIPWLRQIYDGTDTIIGARSVQNGGTELINVTVIH 183

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            D Q        + S  L+    +LN           +    M+        +       
Sbjct: 184 FDPQGAITLRQDAKSAKLEDGYWLLNGVVETEV---GRLPRRMETAQLRTNLKPDFVQER 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           + KA+      L                   ++FH  ++  L  V   LI+   + K + 
Sbjct: 241 LAKADSIQFFDLPRK-IEVARSFGFSTNGLETQFHSLMSLPLLLVAMTLIAACVSLKFSR 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             Q +    + +   +S  V +  + ++     +    P +  +L  + ++ L
Sbjct: 300 FNQSR---SVILGGILSGFVLYVVTVLVKAFGSSGIVPPFVAAWLPVVVAMAL 349


>gi|255020900|ref|ZP_05292956.1| hypothetical protein ACA_1122 [Acidithiobacillus caldus ATCC 51756]
 gi|254969691|gb|EET27197.1| hypothetical protein ACA_1122 [Acidithiobacillus caldus ATCC 51756]
          Length = 357

 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/359 (11%), Positives = 113/359 (31%), Gaps = 4/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  + R +     +    ++ + +V  ++ +       +  +  L+      +P +
Sbjct: 1   MKRADRLLFRGMLGYSTLVLFVLLALMFVANLIAKSGGPGHGSWDMGKLVTYISLQLPDL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     ++ +N ++EL+ +  +G S   L +P+L++ +  ++  F     
Sbjct: 61  AYNLIPLALLLGALIWVSLLNSHSELVALRMSGWSLWRLQRPLLWVGLWGALLTFALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL-QGIFIVDSR 179
           + P      + + A       F  L +   +    D  I+I     +    +G+ IV + 
Sbjct: 121 VVPYTAPAAEAIWANGGQGSGFQALPDGGVWLRQGDQLIQIRAIAADGRRLEGLRIVITT 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +         +        A  L   + H         + +  + + ++ +     +  
Sbjct: 181 PSLDAVTRMLDAREALYRDGAWQLQGVQSHVLGAQRIVSTTLVQQPWDVRLDPGTLRSFS 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                  L  L   +  N       +  +   F KR+T     ++   I +V        
Sbjct: 241 HPTRTMTLPAL-WESYQNLQGSVLSMNRFALAFWKRVTYPWVGLVM--IWLVVPLVTRNP 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
           R       I + L +     +                    +F   + +     +++ Y
Sbjct: 298 RGGGLAGRILMGLVLGLAFHFLTEMSGFISISGGIPPVFATVFPLALFASIAWGLQRYY 356


>gi|91782195|ref|YP_557401.1| membrane protein, YjgP/YjgQ like [Burkholderia xenovorans LB400]
 gi|91686149|gb|ABE29349.1| membrane protein, YjgP/YjgQ like protein [Burkholderia xenovorans
           LB400]
          Length = 365

 Score = 95.1 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 123/362 (33%), Gaps = 16/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ +     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++  ++G S    IKP+   A  + I +     +  
Sbjct: 62  IMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F        +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKLIRARFQQRDEVSLLAPGQFRESATSHRVFFIEKMSPDQARVENVFVTSTEN 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + +     + ++L +G  +   P   D  IM+F+ Y ++ +S      
Sbjct: 182 GKVNVVVSKTGHTETRKNGDRFVVLENGRRYDGQPGQPDFRIMEFERYGVKIQSQPVVNT 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRA 297
                   L+ L NP  +N            +EF  R    L  +   L++I  A     
Sbjct: 242 PTTTGTPTLTLLRNPTDDNL-----------AEFAWRAGLPLIALNLMLLAIPLAHQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    S+I       P  +  L++ +  I +    +  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQSWIEQGKMSFPVGLVGLHVIVAAIVAFIFWLRVRN 350

Query: 358 YT 359
             
Sbjct: 351 RP 352


>gi|197121804|ref|YP_002133755.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. K]
 gi|196171653|gb|ACG72626.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. K]
          Length = 360

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 110/356 (30%), Gaps = 13/356 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +FL++   +V I   +  +   +  + +   L  +L++  Y    V+ 
Sbjct: 2   ILFRYVARRMLGAFLVALAGVVGIYLAVDFVDNASAYTGAGW-LPAVLQLYAYKAAGVVY 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           MV P    +      +   +  E   +   G     L  PVL + +L    L +  + + 
Sbjct: 61  MVAPAALILGAGIATSMFRQTREYTAMRAVGLGPWRLAVPVLAVTLLAGGVLVVLNDAVG 120

Query: 123 PKCRST------IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            +           +            +   +  F  +D      +    P+   + + + 
Sbjct: 121 VQAAERAEEITAHRFARGGNLRRFLAAREPKRWFRGMDGKRVYHLRGNLPDGGFERVTVY 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD-ISIMKFKSYTLQTESANS 235
                         +  +  D +A IL D E     P     +     + Y         
Sbjct: 181 -ELAEGFTLARRIDAARMHPDGRAWILEDVEDRTFRPDGSMALERADRRRYAFDEPPDAF 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           + I  K +    + L+           + +  ++ E + RL   L  +      +  A  
Sbjct: 240 AVIAGKPDQMRWNTLIRQ-IGIRKRLGQPVTEFQLERYDRLAYPLAGI--PGALLALALA 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               R+      +  ++ ++  +FWG   +   +  +    P +  +   +  + L
Sbjct: 297 LRRDRKGHLAAALLEAVGVT-LLFWGMQGVSSALGLSGRVAPWIASWAPNVVFLAL 351


>gi|311694208|gb|ADP97081.1| permease YjgP/YjgQ family protein [marine bacterium HP15]
          Length = 345

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/347 (10%), Positives = 102/347 (29%), Gaps = 4/347 (1%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +R +G +  +  + ++ +  +   +  ++ +  +   +   L      +P  +    P  
Sbjct: 1   MRSVGGAMFLVMMVVLSLDLIFAFIAELDDI-RNNYQILDALWYVFLTLPRRIYDYLPLG 59

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             M     L SM  ++EL ++   G S   ++   +  A+++ +   +    + P     
Sbjct: 60  AFMGCLVGLGSMASSSELTVVRAAGVSLKRIVWSAMKPALVIVVLGVLIGEYLAPPAERV 119

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYY 188
            +   A A  A +       ++ +  D      +                 D Q     +
Sbjct: 120 AQSYKAVALGAGSNVASASGVWHKEGDSYIHLNAVQPNGVLHGVSRFQFDDDRQLLAASF 179

Query: 189 AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS 248
           A+      D    +L +                +   +         S +++K  + +++
Sbjct: 180 AERAIYQGD--HWLLENVRTTSFEDDRTVRVDDRTLRWETGLSPGVLSVLIVKPENLSMT 237

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPI 308
            L          +      Y   F K+    L   +  L++I                  
Sbjct: 238 GLY-TYATYLGEQSLNASRYWLAFWKKALMPLGTAVMVLVAISFIFGPLRSVTMGFRVFT 296

Query: 309 FISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            + + + F     F   +  +      + +L        +  +LM +
Sbjct: 297 GLLVGLLFKYMQDFLGPMSLVYGFNPMLAVLVPIAVSAVAGGILMRR 343


>gi|118594057|ref|ZP_01551404.1| hypothetical protein MB2181_00275 [Methylophilales bacterium
           HTCC2181]
 gi|118439835|gb|EAV46462.1| hypothetical protein MB2181_00275 [Methylophilales bacterium
           HTCC2181]
          Length = 344

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/343 (11%), Positives = 101/343 (29%), Gaps = 5/343 (1%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
             M    ++ +      +Q I  +      ++  +      IP  +    P    + +  
Sbjct: 4   IFMIMFGLISLFAFFDFIQEIGDLGKGGYGISHAMTFVILSIPGHIYETVPLAVLIGSMY 63

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
            +  ++ N+EL +I  +G S   +   ++      +IF  +  ++I P      +Q+   
Sbjct: 64  TIGQLSYNSELNVIRASGFSIKKIATSLMITGGFFAIFTLLIGDLIAPNSEKNAQQMKIG 123

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSID 195
              ++         + +   +     +        +              I  A+ G+ +
Sbjct: 124 LTNSVVGQEFSSGFWIKDGGNFVNIENVLPDATLERINIYEFDSQFNLRTIVNAEKGAYE 183

Query: 196 LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNP 255
                  L +         S     +   S+         + +++     +   L     
Sbjct: 184 EGEWR--LENITQTILYENSVKKKSIPMGSWKSLMRPEMMNALIISPEKMSSFNLY-KFI 240

Query: 256 NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSIS 315
           +      +    Y     +++   L P++  + ++         R   K   +FI + I 
Sbjct: 241 SYLKINNQKSTKYEVALWEKIIHPLMPLVMIIFAVPFGFL--QERSGGKFFKMFIGIIIG 298

Query: 316 FGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                  + I H    N +   I  L    I     L + K++
Sbjct: 299 IAYQITNTLIRHLSLLNDWQPFISSLVPTLIFLCLGLYLIKRF 341


>gi|291616051|ref|YP_003518793.1| YjgP [Pantoea ananatis LMG 20103]
 gi|291151081|gb|ADD75665.1| YjgP [Pantoea ananatis LMG 20103]
          Length = 366

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 133/361 (36%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEVPTNLVLTLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + L +  S+   ++   + 
Sbjct: 62  LILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMVLMLFTSVVAAVNVIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q++  A+     + L    F    D   +   +    N    +F+   R   
Sbjct: 122 PWSSRYQEQVTQNAKANPGAAALAAGQFQTSSDGSAVLFLENVKGNQFGHVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG ++  +   Q + L+ G     + + +D  I  F +Y        ++ 
Sbjct: 182 NARPSVVLADSGHMEQKKDGSQIVTLDKGTRFEGTALLRDFRITDFTNYQAYVGYKQATL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +    + LL+               +R+E H R+T     ++  L+         
Sbjct: 242 DPNDVDQATFATLLS----------NKTPEFRAELHWRITLVFAVLVMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   S +     +     P +++++  IS + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSSGAK-GRLDPAIWMWVVNISYLALAIVLNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|288940756|ref|YP_003442996.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
 gi|288896128|gb|ADC61964.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
          Length = 380

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 119/357 (33%), Gaps = 21/357 (5%)

Query: 10  RCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCF 69
           R   + FL   L +V I   +  L+ +  V+     ++++ +     I   +  + P  F
Sbjct: 17  REAAQVFLAIVLVLVLILASLMFLRTLEEVNLGGLGVDVVFRYLSLQIQRDISSLLPPAF 76

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS-- 127
            +     L    R++EL+ +   G     L +  L LA+ ++         ++P   +  
Sbjct: 77  FLAILVTLARFARDSELIAMQACGVGPPRLYRTFLLLAVPVAFVTGWVALDLKPHAAAGI 136

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
              +L  K Q A          +      + + I + + +  L  +F++D R  +T  + 
Sbjct: 137 QQIRLQQKEQAAQIAGLQAGRFYVEEQGKVVVYIGEIDQHKLLGDVFVLDRRGEKTRLVV 196

Query: 188 Y---AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST-IVLKAN 243
                           + L  G        S    I  F+ Y ++   A S+     K  
Sbjct: 197 SDSGRHRIEESTGDHLVTLTQGHRFDGQAGSGAYLIGDFERYEIRLADAGSAPHAFNKRA 256

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
                 L++ +              R E   RL   L  +   +++I   D     R   
Sbjct: 257 TIPTPDLMHSDELAD----------RVELEHRLAAPLSILTLAVLAIPLVDPSPRQRTTG 306

Query: 304 KIHPIFISLSISFGVFWGFSYIIH--KIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
           +   + ++L   F  F               P ++  L+  L  +  + L+++ + +
Sbjct: 307 R---MLLALLAYFSFFNLQRLAESWMAAGVTPAWLGSLWYQLAILVFVHLMLLPENF 360


>gi|282860071|ref|ZP_06269152.1| putative membrane protein [Prevotella bivia JCVIHMP010]
 gi|282587159|gb|EFB92383.1| putative membrane protein [Prevotella bivia JCVIHMP010]
          Length = 405

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/352 (12%), Positives = 111/352 (31%), Gaps = 4/352 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTVL 61
           + + YI++    +++ + L I+ IA V    + ++  +        I+       IP   
Sbjct: 47  TLDWYIIKKFIGTYIFAILLIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFIPYYS 106

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            + +P    +      + +  N+E++ +   G S   L++P +   IL+S+  F   + +
Sbjct: 107 NLFSPLFVFIAVIFFTSKLAGNSEVIAMLAAGVSFKRLMRPYMISCILISVLTFYLNSFV 166

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      +   +  +     +  E        + +       +      G  +V   + 
Sbjct: 167 IPHGTVIRQNFESLYRNNKKNTSAENVQLQVAKNTVAYIQHYDDHYKRGYGFSLVKFENK 226

Query: 182 QTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +      A     D     +    +++ ++     + + I+    K   L  E  +    
Sbjct: 227 KIVSHMTAMEIQYDTVADTKYHWKVSNYKIRILRGLKEHITTGTEKDTMLLMEPTDLVYS 286

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +        LLN      +     +  Y  EFHKR+       I  +I +  + ++  
Sbjct: 287 KGQQETFTSPELLNYISKQTSRGASNVVQYEIEFHKRIAMSFSAFILTIIGLSLSARKRK 346

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                 +            +    +    +    P     +   +F   + +
Sbjct: 347 GGMGLYLGIGLGLSFGYILLQTVSATFAIQANTPPILAAWIPNVIFAFIAYY 398


>gi|190572727|ref|YP_001970572.1| putative transmembrane permease [Stenotrophomonas maltophilia
           K279a]
 gi|190010649|emb|CAQ44258.1| putative transmembrane permease protein [Stenotrophomonas
           maltophilia K279a]
          Length = 360

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 124/356 (34%), Gaps = 14/356 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +L    G      
Sbjct: 1   MLKLDRYLLGDFVQSFLATLIVLLVVSVGGVLVDILGNIADGRLPAKLLFSQLGLQFIAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     +  + R++E+ +I   G     L++P+L L + +   +      
Sbjct: 61  LPLILPLALMLGLLLAVARLYRDSEMAVITAIGVGPRRLLRPLLMLVVPVVALVGACSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +Q+  +A  ++  + LE   F +L +   + +S  +P+ T  G   +  + 
Sbjct: 121 LGPWAGRVAEQMIIEANRSVLMAGLEPGRFTQLPNGGVVYLSSISPDGTQLGRVFLQRQK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAII---LNDGEVHRKSPISK-DISIMKFKSYTLQTESANSS 236
               ++  A  G +  +        L+DG           D  +  F    +       +
Sbjct: 181 DDRLEVVSAAGGRMFFEGARQRFLELDDGHQVEGPVAGGLDYRLATFARNDVALPDGAQT 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                      + L            +     +++ H+RL   L  + F L+++      
Sbjct: 241 RTGDDPELMPTTQLF----------GDDRPEAQAQLHRRLAPPLIALAFALLTVPLGRSS 290

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
              ++  ++    ++  +   + +  S  I   +  P              +I++ 
Sbjct: 291 PRQQRYGRMMLALMAYMVGTNLMFIGSGWIANGKIPPALGLWWLTLPLLALAIWMY 346


>gi|120611823|ref|YP_971501.1| permease [Acidovorax citrulli AAC00-1]
 gi|120590287|gb|ABM33727.1| permease YjgP/YjgQ family protein [Acidovorax citrulli AAC00-1]
          Length = 365

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/366 (12%), Positives = 115/366 (31%), Gaps = 10/366 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPT 59
           MK+    I R    +     L  + + +   ++  +  V       ++  L      IP+
Sbjct: 1   MKTIRWLIYREALAAVGFVTLGFLALFFFFDMVDELRYVGRVQGYQMSHALLYVSLGIPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L  + P    + T  V+    +++E  I+  +G    + ++ +L L +   +  F   +
Sbjct: 61  HLYELLPITVLIGTIFVMARFAQSSEFTIMRTSGLGPWSALRTLLVLGLGFVMLTFTVGD 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P      + + A+    +T       L  R  D       +   ++       +   
Sbjct: 121 YLAPATDRLAQLVRARYLGQITTGATGAWLKERQGDRSVAVNVRALRHDGGMSNVRIFEF 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-----SYTLQTESAN 234
           D         Q+ + +    A  L D +        +  + ++        +     S  
Sbjct: 181 DGDGRLASTVQAAAGEFGADAWELRDVKRSVFHRRGEAEAHVERLQEASFRWPTHISSDM 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +  +LK +      L      +     +  + Y  EF +++   +  ++  ++S+  A 
Sbjct: 241 VAASLLKPDRMATIDLFQ-YIRHLESNGQAAQKYEIEFWRKVFYPMSCLVMVVLSLPFAY 299

Query: 295 KRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFL--FCISSIFL 351
                          +   ISF +    F Y  +    +P+        +        F 
Sbjct: 300 LHFRSGGIAGYVFGGVMAGISFFLLNNVFGYAGNLQNWSPWLTAAAPGIIYSLLSLGAFG 359

Query: 352 LMIKKK 357
            ++ ++
Sbjct: 360 WLVLRR 365


>gi|322506460|gb|ADX01914.1| permease [Acinetobacter baumannii 1656-2]
 gi|323516339|gb|ADX90720.1| permease [Acinetobacter baumannii TCDC-AB0715]
          Length = 350

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 113/339 (33%), Gaps = 14/339 (4%)

Query: 18  MSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVL 77
           M    +  I    ++++   + +      +IL  I GY +P  L ++ P  F +    V 
Sbjct: 1   MVIALLTLIMMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLTLILPLGFFIGLMLVF 60

Query: 78  TSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQ 137
             +  + E+ +++ +G SR  L + ++ + ++  +   +    + P      ++L+    
Sbjct: 61  GRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWMTPWGLREFEKLTTTQA 120

Query: 138 LALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLD 197
           +   F  +    F           S       L+ IF       +        +      
Sbjct: 121 VRTGFDLVRPREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAKEGKPDVMILAKEATRV 180

Query: 198 R------QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLL 251
                    + L  G  +   P     +  +F+SY L+ E+           +   +  L
Sbjct: 181 EVANDTANVVDLVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKDVKFESGDVEALSTSKL 240

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
               N+P          RSE   RL      +I  ++S+  ++      +  ++ P    
Sbjct: 241 FSKANDPV--------VRSELGWRLFGPFTIIIALMLSVALSEVSPRQGRYYRLIPSIFI 292

Query: 312 LSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
            +    +       I K E + +  P+  L     +++F
Sbjct: 293 FASLIVLMIAIKTRISKGELDIWAYPVALLVYAIAAALF 331


>gi|92117864|ref|YP_577593.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
 gi|91800758|gb|ABE63133.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
          Length = 365

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 107/360 (29%), Gaps = 14/360 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y       + L     I  +  ++  ++ +   S  ++ S  ++ + S + +P +
Sbjct: 6   NTLGRYFASRFVVAALGVFASIFLLLVLVDYIEMVRRTSGLASASAIMVAETSLFRVPQL 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  +TPFC  +       +++R  EL++    G S    I P L  A++L +    + N 
Sbjct: 66  LEKLTPFCVLIGAMTCYLALSRRLELVVARAAGISAWQFISPALACALVLGVLATTAYNP 125

Query: 121 IEPKCRSTIKQLSAKAQLA------LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           +    R   K++ A+   +         S    N        +            L G+ 
Sbjct: 126 MSANLRELSKKMEAELFGSVSGGGLQEASGFWINQVTDDGQAIINAARSEQQGVRLTGLT 185

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +       T +       +   D +   L  G   R +  S  +    F   T    +A 
Sbjct: 186 VFRFDPDSTFRERIEAREATLEDGRW--LFKGV-RRFTLDSPPVEQETFVLPT-SLTAAQ 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                      +   L      +          YR ++HK + Q        +++   + 
Sbjct: 242 VRNSFSTPETVSFWQL-PGYIRSSESSGFATAGYRLQYHKLIAQPFLLAAMVMLAASVSL 300

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                R       +   +   F ++          +              C+  +   ++
Sbjct: 301 --RFFRFGGVQKMVLSGVGSGFLLYVLSKVTEDLSKAELMNPIAAAWLPVCVGGLAGFLV 358


>gi|325295269|ref|YP_004281783.1| permease YjgP/YjgQ family protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065717|gb|ADY73724.1| permease YjgP/YjgQ family protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 354

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 117/351 (33%), Gaps = 4/351 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + Y+     R F+++ L  + +  VI  + +++    S   +        Y +P   
Sbjct: 3   KRLDRYVFIETLRYFVLTLLTFMVLFIVIDFVSKMDTFLKSG--IADGFLYVIYRLPLYT 60

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V P    + T   L++ + + EL ++   G S      P++FLA L SI  F+   ++
Sbjct: 61  VRVIPIATLIATMVTLSNFSFSNELTVVKALGISVYRFSFPIIFLAFLASILSFLIGELV 120

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK  S  K +  K +    F    ++++F+ D+       +Y      +   I      
Sbjct: 121 VPKSISLSKSIYYKVKENKNFHVSGKSIWFKKDEK-TFVFMEYVNPAKSEAKRISIFFLG 179

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +             ++ +  I        +       + +  K   L     +     ++
Sbjct: 180 KEFSPTKRIDALYGINIKDDIWKLKNCFERKLKELKTTKISEKEINLGIGKKDLIFTQIE 239

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               + SFLL                Y  + + +L   L P++  +I I         ++
Sbjct: 240 TETMS-SFLLYKVIKQLKRAGYDTTGYLVDLYSKLAISLLPLVVAVIGIPLGVFNPRNKK 298

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
              +      +   +     FS +       P+Y       +F    + LL
Sbjct: 299 GYTLVIAAALIVFMWITISFFSSLGKSGVLPPFYSAFAPEVMFLSIGLLLL 349


>gi|329118130|ref|ZP_08246842.1| YjgP/YjgQ family permease [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465790|gb|EGF12063.1| YjgP/YjgQ family permease [Neisseria bacilliformis ATCC BAA-1200]
          Length = 431

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 122/347 (35%), Gaps = 21/347 (6%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
            ++ +  + +   + I+ +    Q +  +   +    + + +  + G+    + P++   
Sbjct: 74  FIKELTYTAVGIFVVILAVLVSTQAVNLLGRAADGRVAADAVAALIGFWTLGMTPLLLVL 133

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +    VLT   R++E+ +  + G S    ++PVL  A+  +  +   +  + P    
Sbjct: 134 TAYISVLTVLTRFWRDSEMAVWLSCGLSLKQWLRPVLAFALPFAALVAAMQLAVLPWAEL 193

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVDSRDTQTH 184
             ++ +   +     S +E   F  L      +Y   +    +  ++ +F+ +  D    
Sbjct: 194 RSREFAELLKQKQELSLVEAGEFRTLGKRNGRVYFVETFDTESGVMKNLFLREQDDKGRE 253

Query: 185 KIYYAQSGSIDLDRQAIILNDGEVHRK--SPISKDISIMKFKSYTLQTES-ANSSTIVLK 241
            + +A+ G   L      L   + +R    P   D + + F+  +L   +       V  
Sbjct: 254 NVVFAKEGRFALTDHKRTLELTQGYRYGGIPGEADYNRVGFEHLSLVISTTPKIVNPVDH 313

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                 + L+                YR+E   R++  L  VI  ++++          +
Sbjct: 314 RRTIPTARLI----------GSDNPQYRAELMWRVSLPLAAVILAILAVPL---SYFNPR 360

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCI 346
               + I  ++        G + + + I   +  ++   L L +  +
Sbjct: 361 TGHTYNILFAIGFFLVYQNGLTLLRNAIENGKIGFWAGFLPLHILML 407


>gi|92115032|ref|YP_574960.1| permease YjgP/YjgQ [Chromohalobacter salexigens DSM 3043]
 gi|91798122|gb|ABE60261.1| permease YjgP/YjgQ [Chromohalobacter salexigens DSM 3043]
          Length = 354

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/354 (11%), Positives = 105/354 (29%), Gaps = 6/354 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+ YI R +  + L+  + I+ +  VI  +  +  V         +L      +P    
Sbjct: 5   RFDRYIARNVLAAMLVVQVMILGLDLVISYINDLGDV-EGDYGALDVLLYLLMRLPWRFY 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +     L SM  + EL ++  +G S   ++   +    L+ I        + 
Sbjct: 64  QYAPVGVLIGALIGLGSMASSNELTVMRASGRSLARILWGAMKPLGLVIIVTMAISEWVS 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +     QL    + L E   ++ + D + +      ++ +  +       TQ
Sbjct: 124 PVT-EQYAEAWRLEQLEGEGAILSERGGWQREGDDFYRFGTIRADDVVIDVTRYHFDGTQ 182

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                +A     +      +  + +  R       +     +++      A  + ++   
Sbjct: 183 LVSATHADRAVWEDGSWQWV--NVDTTRFEDGRTVVDSQPRQAWETSFTPAQLNRLLRPL 240

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
             Q+ S L     +    +          F +++          L++             
Sbjct: 241 ESQSPSDL-WRYASYLGNQGLEATQPLLYFWQKMLLPFTLAGLMLVAASFVFGPLRTVAA 299

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  I + +SF            +        +L +       + ++++++
Sbjct: 300 GTRVFYGIIVGVSFKYLQDLLAPASMLFGFSPIFAVL-VPTVACYVLGIVLLRR 352


>gi|126661397|ref|ZP_01732459.1| hypothetical protein CY0110_10922 [Cyanothece sp. CCY0110]
 gi|126617328|gb|EAZ88135.1| hypothetical protein CY0110_10922 [Cyanothece sp. CCY0110]
          Length = 353

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/346 (10%), Positives = 111/346 (32%), Gaps = 19/346 (5%)

Query: 27  AWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTEL 86
             +  +    + V  S   L    +I    +P       P    + T      ++ ++EL
Sbjct: 7   VAIGYLSDLADKVVDSNLPLMQASEILLLKVPEFTAYALPISVMLSTLLTYGRLSNDSEL 66

Query: 87  LIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLE 146
           +   + G S   LI P + +++ ++   F+   ++ P        +  +        +  
Sbjct: 67  IAFRSCGVSLYRLIIPAMVMSLAVTGVTFLMSELVVPAANYRATAILVEYLQEDHPYWQN 126

Query: 147 ENLFFRLDDDLYI------------KISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI 194
           +++F+   + + +              ++      L+ + +++  + + ++I  + S + 
Sbjct: 127 KDIFYPDYEQVTLPNGDQEKRLKHLFFAEQFDGQHLKTLTVLEWLEERLNRIVVSDSATW 186

Query: 195 DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSSTIVLKANDQNLSFLLN 252
           +   +     +G +++ S  +       F+   L    A    +       + N+     
Sbjct: 187 NGQEETWDFFNGTIYQLSSDASYKEAYPFEHRQLPLTKAAFEFALQGRDPYEMNIIQARQ 246

Query: 253 PNPNNPNY-RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
                      + L  ++    ++L      V+FG++            Q  +     +S
Sbjct: 247 YMKILKMMGDDKKLRMFQVRIQQKLAFPFICVVFGVVGSALGATPQ---QMSRATGFGLS 303

Query: 312 LSISFGVFWGFSYIIHKIEQNPYYIPIL-YLFLFCISSIFLLMIKK 356
           + I F  +     I            +  +L      ++   ++ +
Sbjct: 304 VVIIFSYYLLGFLIGSLGLMGLISPVLAGWLPNLLGLAMGGWLLYR 349


>gi|254428344|ref|ZP_05042051.1| putative permease, YjgP/YjgQ family [Alcanivorax sp. DG881]
 gi|196194513|gb|EDX89472.1| putative permease, YjgP/YjgQ family [Alcanivorax sp. DG881]
          Length = 353

 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 96/357 (26%), Gaps = 5/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y  R +    L     IV +  +   +  +         +   L+      P  
Sbjct: 1   MTLLKRYFWRAVMIPTLAILFIIVGLDCLFGFVYELE-FLRGNYQVMEALQFILTTTPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    + T   L  +  + EL +I   G S + +   VL   ++L I        
Sbjct: 60  FYEYMPMAILLGTLIGLGLLANSGELSVIRAAGVSTLKVSWLVLRPVLVLIILSIPLGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   + A+        +   + R   +     +               S +
Sbjct: 120 LTPYSEQVAQSNRSMAEGGGEALRSKYGYWHREGPEFIHINAVQPNGVLHGLTRYRFSDN 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +  Y        D     L      R      +        +  +      S +VL
Sbjct: 180 QKLTETQYVDRAIYQGD--FWSLEGIHGTRLFDDHAETYQKDQGEWQTELTPQLLSIVVL 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           + ++  L  LL         +      Y   F ++L   L  +   LI+I          
Sbjct: 238 QPDNLALVKLL-EYTRYLKRQGLETADYMLSFWQKLFMPLATIGMVLIAISFVFGPLREV 296

Query: 301 QRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                    I   + F      F  +      +P    +L   L  +  ++LL   +
Sbjct: 297 TMGLRLTAGIVAGLIFHYGQQFFGQLSLVFHTDPLLAAMLPPSLCLVLGVWLLQRVR 353


>gi|296162276|ref|ZP_06845070.1| permease YjgP/YjgQ family protein [Burkholderia sp. Ch1-1]
 gi|295887430|gb|EFG67254.1| permease YjgP/YjgQ family protein [Burkholderia sp. Ch1-1]
          Length = 365

 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 123/362 (33%), Gaps = 16/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ +     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++  ++G S    IKP+   A  + I +     +  
Sbjct: 62  IMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F        +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKLIRARFQQRDEVSLLAPGQFRESATSHRVFFIEKMSPDQARVENVFVTSTEN 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + +     + ++L +G  +   P   D  IM+F+ Y ++ +S      
Sbjct: 182 GKVNVVVSKTGHTETRKNGDRFVVLENGRRYDGQPGQPDFRIMEFERYGVKIQSQPVVNT 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRA 297
                   L+ L NP  +N            +EF  R    L  +   L++I  A     
Sbjct: 242 PTTTGTPTLTLLRNPTNDNL-----------AEFAWRAGLPLIALNLMLLAIPLAHQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    S+I       P  +  L++ +  I +    +  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQSWIEQGKMSFPVGLVGLHVIVAAIVAFIFWLRVRN 350

Query: 358 YT 359
             
Sbjct: 351 RP 352


>gi|116690487|ref|YP_836110.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia HI2424]
 gi|170733808|ref|YP_001765755.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia MC0-3]
 gi|116648576|gb|ABK09217.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia HI2424]
 gi|169817050|gb|ACA91633.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia MC0-3]
          Length = 364

 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 123/364 (33%), Gaps = 16/364 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLITFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKMIRARFQQRDEISLLAPGQFRESAANHRVFFIEKMSPDQSKVQNVFVTSTEN 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + +     + ++L DG  +  +P   +  IM+F+ Y ++  S   + +
Sbjct: 182 GKVNVVVSQTGHTETSKDGDRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSKPVTNV 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRA 297
               +      L NP  +N            +EF  R    L  +   ++ I  +     
Sbjct: 242 QTTNSTPTPDLLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIPLSYQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    + I          +  L++ +  I +    +  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHVVVAAIVAFIFWLRVRN 350

Query: 358 YTKI 361
              +
Sbjct: 351 RPLL 354


>gi|225164329|ref|ZP_03726596.1| permease YjgP/YjgQ family protein [Opitutaceae bacterium TAV2]
 gi|224801063|gb|EEG19392.1| permease YjgP/YjgQ family protein [Opitutaceae bacterium TAV2]
          Length = 379

 Score = 94.3 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/378 (12%), Positives = 113/378 (29%), Gaps = 26/378 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPT 59
           MK  + +I   +  +   + L   F+  V   L   +    +   ++  + K+   L+P 
Sbjct: 1   MKILQRHIFLSVLTTCFAAVLLFTFVLIVGNALKDLLQFALAGQITMPDMAKLLLLLVPY 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+    P         VL  M+ N+E+  +   G     + +P+L LA+  S+   I   
Sbjct: 61  VVAFALPIGVLTGVLLVLGRMSGNSEITAMRAAGLGIAFVTRPILLLAVAGSVICLIVNY 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
              P  R   K +      +     +    F R   +  + + + +             R
Sbjct: 121 YYMPMTRKPYKNMVPNIVRSDPLKLITARTFLREFPNAVVYVDEKDGTVLRDLWVWELDR 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-----------SYTL 228
           D +  + ++AQ G +  + ++  L        + +        F             +  
Sbjct: 181 DKRVVRAHHAQEGELAYNEESHKLVLKVREGTTELRDRDDPEAFNKVVTVSTFGSAEFEF 240

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPN--------YRPELLETYRSEFHKRLTQWL 280
              +        +  D      L                             +K+    L
Sbjct: 241 SLSNLFGRITTRQKLDWMTLEELKAQREQLTAAPDADTPEGQMRRMQVDVTLNKKAANAL 300

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP--I 338
             + F LI +    K +       +    +       +++  S +   +E  P + P  I
Sbjct: 301 AVLAFALIGVPLGIKVSRRETSANLGMALL----LILIYYMLSGVAGWLEAYPRWRPDLI 356

Query: 339 LYLFLFCISSIFLLMIKK 356
           +++     +     ++ +
Sbjct: 357 VWVPPLLFAGFGAWLLSR 374


>gi|254473284|ref|ZP_05086681.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
 gi|211957400|gb|EEA92603.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
          Length = 363

 Score = 94.3 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 99/362 (27%), Gaps = 14/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
           ++  LYI +   +S L   LF   +  +  +L+ +         SL  +  IS   +P +
Sbjct: 4   RTLSLYISKRFLKSILALFLFAAVLILLFDVLELVRRGGDREGFSLLRIAAISALRVPLL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V PF     +     +++R+ EL++    G S      P L   + + I   I  N 
Sbjct: 64  LEQVIPFAVLFGSIWAFVTLSRSLELVVARAAGISVWQFTAPALLTGLFIGIASVIGYNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFS-----YLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
                +    +++                         D +  +                
Sbjct: 124 GAVYLQQKSDEVAEGLFSVEQTYLLEGSGEVWLRQNGTDGESVLHARHIGGQGATLNGVT 183

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           + S D Q       ++    L      L D  V+      +        ++         
Sbjct: 184 IFSFDRQGEFSERIEARRAVLAEGMWRLTDAVVYALDTDPQHYDNYSVSTF---LTPTEV 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
              +      +   L                 Y  ++   L + L  V   +I+   +  
Sbjct: 241 KESIGSPESISFWSLPR-FIELSQRAGLPAYRYSLQYQTLLAKPLLLVAMIVIAAAVSL- 298

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLM 353
             + R       I   +   F ++               P  +      +F +   F ++
Sbjct: 299 -RVSRFGGIGRLIIWGIIAGFVLYAVSEISKDLGGAGIVPTAVAAWAPGVFGVLMGFTIL 357

Query: 354 IK 355
           + 
Sbjct: 358 LN 359


>gi|89054304|ref|YP_509755.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
 gi|88863853|gb|ABD54730.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
          Length = 364

 Score = 94.3 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/361 (11%), Positives = 99/361 (27%), Gaps = 13/361 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              LYI R    SF +     + I   I +  ++  + S  +  + +L+++   +P  + 
Sbjct: 2   ILHLYIARRFLVSFGIVLAVFMAILLPIDMADQLRRIGSD-QGFSAVLQLALLNLPRSIT 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   + R +EL+++   G S +      + +A+++     +  N + 
Sbjct: 61  GLMPLFVMLATLVLFLGLARTSELVVVRAAGRSALKSAASPVIVALIIGGLSLLILNPLV 120

Query: 123 PKCRSTIKQLSAKAQLALT------FSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
                      A+     +                  +  +    +  +    L      
Sbjct: 121 ATTARQYDLTLARLSGLESRSVSVTGEGFWLRQGTGSEQTVIRASATNSDGTHLFDASFF 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ--TESAN 234
                           ++       + +          + +     F + TL        
Sbjct: 181 TFDADGALLERMDAREAVLARAAWTLTDVKRWPLAQSDNAEADAELFPTLTLPSTLTPEQ 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                       +  L        N        +R+ F  +L+  L      LI   A  
Sbjct: 241 IRDSFGNPETVPIFEL-PGFIRQLNDAGFAALQHRTWFQMQLSSPLLLAAMVLIG--AGF 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLM 353
                R  K    +  ++ + FGV +   +     E        + +        + +  
Sbjct: 298 TMRHTRFGKTGVMVLGAILLGFGVVFLRRFAEVLGETGQLAASLVAWTPPIAAILLAIGF 357

Query: 354 I 354
           +
Sbjct: 358 L 358


>gi|304396396|ref|ZP_07378277.1| permease YjgP/YjgQ family protein [Pantoea sp. aB]
 gi|304355905|gb|EFM20271.1| permease YjgP/YjgQ family protein [Pantoea sp. aB]
          Length = 366

 Score = 94.3 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 124/356 (34%), Gaps = 17/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEVPTNLVLTLLGLGVPQMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + L +  S+   ++   + 
Sbjct: 62  LILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMILMLFTSVVAAVNVIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +++  A+     + +    F    D   +   +    N    +F+   R   
Sbjct: 122 PWSSRYQDEVTQNAKANPGAAAMAAGQFQTSGDGSAVLFVENVKGNNFGNVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + L+ G     + + +D  I  F +Y        ++ 
Sbjct: 182 NARPSVVLADSGHLEQRKDGSQVVTLDKGTRFEGTALLRDFRITDFTNYQAIVGYKAATL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               +   +LS L+                +++E H RLT     ++  L+ +  +    
Sbjct: 242 DPNDSEQASLSDLV----------ANKTPDFQAELHWRLTLVFAVLVMALMVVPLSVVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              +   + P  +   I F +         K   +P     +++       + +L+
Sbjct: 292 RQGRVLSMLPAMLLYLIFFLLQSSLKSSGAKGRLDPALW--MWVVNISYLVLAVLL 345


>gi|261855831|ref|YP_003263114.1| permease YjgP/YjgQ family protein [Halothiobacillus neapolitanus
           c2]
 gi|261836300|gb|ACX96067.1| permease YjgP/YjgQ family protein [Halothiobacillus neapolitanus
           c2]
          Length = 371

 Score = 94.3 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 122/342 (35%), Gaps = 19/342 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+LR    + L   L ++ I     + + ++  +  +   +++  + G+    +
Sbjct: 1   MPILNRYLLREASVATLGVTLIVMLIMLANLLARSLSAAAEGSLPSSLIPAMMGFNAVKL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P    +     L  M+R++EL ++   G     L + +L+LAI +S+        
Sbjct: 61  LIYVLPVGLFIGLMFALGRMSRDSELTVLRACGYGPRHLSQAILWLAIPVSLLTASISLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P  +    ++   A+    F+ L    F        +        N    IF  +   
Sbjct: 121 AYPALQQVQSRMIDSARSQQVFNQLPVGRFIEEPSGKAVLYIGSKSGNGYSDIFAFNEPT 180

Query: 181 TQTHKIYYAQSGSIDLDR--------QAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
              +             +        + ++L  G   +     +D S++ ++++ +    
Sbjct: 181 NTKNARQKPGVEMAPFGKLMTDSAGHRYVVLEQGRRIQGVAGEQDWSVIDYQTHEILVPG 240

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              +    +    +L  L +  P +           ++EF+ RL+Q L  ++  LI++  
Sbjct: 241 RADTENTQENKKSSLQLLHSNLPGD-----------QAEFYYRLSQALTVLVLALIAVPL 289

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           A  +    +  ++   F+  ++ F +       I   E N +
Sbjct: 290 AQAKPRSGRYGRLFWAFLLYALYFNLIALTENAIKHGELNLW 331


>gi|330836571|ref|YP_004411212.1| permease YjgP/YjgQ family protein [Spirochaeta coccoides DSM 17374]
 gi|329748474|gb|AEC01830.1| permease YjgP/YjgQ family protein [Spirochaeta coccoides DSM 17374]
          Length = 363

 Score = 93.9 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 120/356 (33%), Gaps = 9/356 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI+R     FL +      +   + +   ++  + +      +L+++   IP  
Sbjct: 1   MKILDRYIMRSFLTVFLSALGICTLLLVAVDLFTNLDSYAKNEVPFFAILRLTVLYIPDA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V         T  L  ++ + EL+ I   G   I +I P++ + I +S+    +   
Sbjct: 61  VSLVISPAVIFSATLTLALIHSSNELIPIFCAGIPYIRVIIPMMAVGICVSMTTLAATEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I    R    ++  +   + T        F        +   +Y+         ++  RD
Sbjct: 121 IVIPSRVNRVEVQTEYTGSQTSKDNRNITFVDASGRFVLHAKRYDATRQRIMNMVLIERD 180

Query: 181 ---TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--FKSYTLQTESANS 235
               +      A     D   +  IL+D  +   +     +S  +    S  L  E    
Sbjct: 181 GPGGRMTGRTSAGMAQWDETERRWILSDVSIQNFTEGDTVLSFHEDTLMSDILDIEPGLF 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S +     + +    L    N     P    T  +++++R   +L P I  +I+      
Sbjct: 241 SYLGTDIKNMDRKTALWYLDNMKGLDPYQWATAATDYYERAYSFLTPFILMIIACS---- 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                ++  +    ++      VF+    +   + +     P+  +FL     I L
Sbjct: 297 MNYQYKKNVLLFSILTSIGIAIVFYVTQLVTLLLAKQYVISPLTGVFLPLGLMIAL 352


>gi|254247471|ref|ZP_04940792.1| hypothetical protein BCPG_02269 [Burkholderia cenocepacia PC184]
 gi|124872247|gb|EAY63963.1| hypothetical protein BCPG_02269 [Burkholderia cenocepacia PC184]
          Length = 364

 Score = 93.9 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 123/364 (33%), Gaps = 16/364 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRRYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLITFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKMIRARFQQRDEISLLAPGQFRESAANHRVFFIEKMSPDQSKVQNVFVTSTEN 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + +     + ++L DG  +  +P   +  IM+F+ Y ++  S   + +
Sbjct: 182 GKVNVVVSQTGHTETSKDGDRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSKPVTNV 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRA 297
               +      L NP  +N            +EF  R    L  +   ++ I  +     
Sbjct: 242 QTTNSTPTPDLLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIPLSYQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    + I          +  L++ +  I +    +  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHVVVAAIVAFIFWLRVRN 350

Query: 358 YTKI 361
              +
Sbjct: 351 RPLL 354


>gi|254446201|ref|ZP_05059677.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
           DG1235]
 gi|198260509|gb|EDY84817.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
           DG1235]
          Length = 392

 Score = 93.9 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/380 (15%), Positives = 130/380 (34%), Gaps = 29/380 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQ-RINLVSSSTESLNILLKISGYLIPTVL 61
            F  YIL  +  + L + L   FI  + + ++    +++    ++    ++ G L+P V 
Sbjct: 2   LFHRYILWNVAVTSLGAILMFAFIVLLGEFMRDLFGMLAEGQVTVGTCFRLVGLLLPYVF 61

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P          +  ++   E++ +  +G S   L   V+FLAIL  +         
Sbjct: 62  VHALPMGLLTGIMISMGRLSSQGEVVALRASGVSIARLASSVVFLAILGVVTSIAVNFEF 121

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+  +  +   A+A       ++    F +      +       +   +          
Sbjct: 122 GPRAINAYRGEIAEAVRTGPLRFIIPRKFVKDFPGFVVYAGAKEDDVLRELWIWKLDDGG 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILND-------GEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +T  +  A+SG+++LD     L          ++  K P        +    +   E   
Sbjct: 182 RTTSLIKAESGTLELDEYEQTLRLLLRSGSIAKMDSKDPEDFSEIRGELSFGSFPLEFPI 241

Query: 235 SSTIVLKAN---------------DQNLSFLLNPNPNNP--NYRPELLETYRSEFHKRLT 277
            S +  K                  + L  LL+   ++        +L   +  FH++L 
Sbjct: 242 DSILEKKPRRVKMYWLVGGELMSEWRRLDKLLSGEIDSEVRREAARMLAEAKMAFHEKLA 301

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
             +  + F L++I          +++    + I+L +    +   + I     Q   +  
Sbjct: 302 AGVSVLSFALMAIPLGISVQ---RKETSANLGIALGLGVLYYLMTALIGWGGGQGMPFPH 358

Query: 338 IL-YLFLFCISSIFLLMIKK 356
           +L ++  F +  I L +I +
Sbjct: 359 LLYWIPNFLLQGIGLWLIYR 378


>gi|94987324|ref|YP_595257.1| permease [Lawsonia intracellularis PHE/MN1-00]
 gi|94731573|emb|CAJ54936.1| predicted permeases [Lawsonia intracellularis PHE/MN1-00]
          Length = 384

 Score = 93.9 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 110/360 (30%), Gaps = 5/360 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +  I R     F +    ++ +  + + +Q  +L       +  +L +  Y++P  L 
Sbjct: 4   LLQRQIFRESTYIFFLVVGALLTLIIINRAIQMRDLFIGLKLEILDVLILFSYMVPLFLI 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        MN + EL+ +  +G S   ++   L  +   ++          
Sbjct: 64  LVIPIACMLGVFLTFLRMNLDKELIALKASGISIYQMLPAPLAFSFFCTLLTLWISLFWI 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDT 181
                  K              ++  +F        +   + +P +  L  I + D    
Sbjct: 124 AWGMEQFKTTLLDIARTKVKISIQPGVFNNNFPGFVLFARQVDPLSGELHQILLEDRSQK 183

Query: 182 QTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             H +  A +G+I+ +         L +G ++  S               +   +   + 
Sbjct: 184 DRHLVILAPTGTIETNPTKGELIFNLTNGNIYTMSLNKTSFLSFDQYLVRIPLTTLLKNI 243

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +   + +S+       N     +       E HKR       +   + ++  A    
Sbjct: 244 NFNELRPKEMSWERLIKEYNITNTMQYQNKISVELHKRWAYPAACIALTIFALPLAIMFE 303

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            + ++  +    I   I +G+              P     L   LF +  ++ + +  +
Sbjct: 304 GIHRQFGLILALIMFFIYYGLMSFGFSTGESGTIPPAIGLWLPNILFFLLGLYGIYLTSR 363


>gi|89900898|ref|YP_523369.1| permease YjgP/YjgQ [Rhodoferax ferrireducens T118]
 gi|89345635|gb|ABD69838.1| permease YjgP/YjgQ [Rhodoferax ferrireducens T118]
          Length = 368

 Score = 93.9 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/369 (14%), Positives = 128/369 (34%), Gaps = 13/369 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI---NLVSSSTESLNILLKISGYLI 57
           MK+    I   +  +     L  + + +    ++ I      S +   L   L     +I
Sbjct: 1   MKTLRRLIYGEVLYAVAFVTLGFLSLFFFFDFVEEIQAVGRYSEAGYRLVHALTFVALMI 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P+ L  + P    + T  V+  + +++E  I+  +G      +K +L L +   +  F  
Sbjct: 61  PSHLYELLPIAVLIGTIFVMARLAQSSEFTILRTSGLGPWRALKALLLLGLGFVVLTFAI 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEEN-LFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + I P      + L A+ Q ++T           + +    + +S   P+ +++G+ + 
Sbjct: 121 GDYISPPADRAGQLLKARYQGSITVGQTGAWLKEQQTNAQYAVNVSAMAPDGSMRGVRVF 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-----SYTLQTE 231
           +  +            +      A  L+        P   D + +         +  Q  
Sbjct: 181 EFDNQGFLMSTLQAESAQFGADDAWNLSRVSRTEFPPRDADTARIDRAQLDSFRWPNQIS 240

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           +   +  +LK    +   L      +     ++ + Y  EF K++   L  ++  ++++ 
Sbjct: 241 AEMVAAALLKPERMSTIDLFQ-YIQHLRANSQVAQRYEIEFWKKVFYPLSCLVMVVLALP 299

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSI- 349
            A                +   ISF +    F Y+ +     P+    L   ++ + S+ 
Sbjct: 300 FAYLHFRSGGIATYVFGGVMAGISFFLLNNVFGYMGNLQNWQPWLTAALPGMIYLVLSLT 359

Query: 350 -FLLMIKKK 357
            F  ++ ++
Sbjct: 360 AFGWLVLRR 368


>gi|320451335|ref|YP_004203431.1| hypothetical protein TSC_c22800 [Thermus scotoductus SA-01]
 gi|320151504|gb|ADW22882.1| hypothetical membrane spanning protein [Thermus scotoductus SA-01]
          Length = 347

 Score = 93.9 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 111/342 (32%), Gaps = 14/342 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+LR +   F +    IV +     + + +  + +       LL    Y  P  
Sbjct: 1   MKTLDRYLLREVLAHFSLGLAVIVLLFLAGAVYEVLAPLVAKGADPYTLLLYLFYRTPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  +      +L+ +  ++EL  +   G  R  ++ P+L L  LL++  F+    
Sbjct: 61  LVRGAPVAYLFALLFLLSRLGEDSELKALLALGIRRERVLLPLLGLGALLALLGFLLGES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK  +  + L  +  L    + L     F+      + + +   +       I   R 
Sbjct: 121 LVPKALAQGQDLLRRQVLERPRALLTPGTTFQDARGRVVYVGEVARDR------IGKLRI 174

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               ++  A+ G        + +  G         +  ++ +F+   L            
Sbjct: 175 LSQEEVVLAEEGRFQ--GGVLQVEKGLRVTYE-GDRPRTLTRFQEGELVLRDLTFEPWQN 231

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            AN   L  L                   + +++R  +    ++F L +   A       
Sbjct: 232 PANRMTLKEL-KEEVERLRKSGVKAGLEATTYYRRYAEPAASLVFALFATGLAFYLL--- 287

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
                    + +++    ++    +   + +     PIL  +
Sbjct: 288 -GGSRSLGLVGVAVLTFFYYATWSVGRIMGEQNALDPILAAW 328


>gi|170692022|ref|ZP_02883186.1| permease YjgP/YjgQ family protein [Burkholderia graminis C4D1M]
 gi|170143306|gb|EDT11470.1| permease YjgP/YjgQ family protein [Burkholderia graminis C4D1M]
          Length = 365

 Score = 93.9 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 120/362 (33%), Gaps = 16/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ +     +++ +   +        +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAAQGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++  ++G S    IKP+   A  + I +     +  
Sbjct: 62  IMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTRFIKPIGMFATPIIILICFFVFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F        +   +    +      +  +    
Sbjct: 122 PWSNQQSKMIRARFQQRDEVSLLAPGQFRESASSHRVFFIEKMSPDQGHVENVFVTSTEN 181

Query: 183 THKIYYA----QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + +     + ++L +G  +   P   D  IM+F+ Y ++ ES      
Sbjct: 182 GKVNVVVSKNGHTETHKNGDRFVVLENGRRYEGEPGHPDFRIMEFERYGVKIESQPVVNT 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRA 297
                   L+ L NP   N            +EF  R    L  +   L++I  A     
Sbjct: 242 PTTTGTPTLTLLRNPTQVNL-----------AEFAWRAGLPLIAINLMLLAIPLAHQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    S+I          + IL++ +  I +    +  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQSWIEQGKMSFALGLVILHVIVAAIVAFIFWLRVRN 350

Query: 358 YT 359
             
Sbjct: 351 RP 352


>gi|162149096|ref|YP_001603557.1| hypothetical protein GDI_3326 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545161|ref|YP_002277390.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787673|emb|CAP57269.1| putative membrane protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532838|gb|ACI52775.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 369

 Score = 93.9 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 105/360 (29%), Gaps = 18/360 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   YI R    + +   L +  +  +   +  +  V++      ++  +I+   +P  +
Sbjct: 6   TLSFYIARQFTLAVMAMILSLTGLVSLFDFIDLLRRVATRPDVPTSLASEIALLHVPYFM 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +        + R++EL++    G S    +   L  A+L+ I    + + +
Sbjct: 66  IEILPFGVLLGGIVCFWRLTRSSELIVARAAGISAWQFLTGPLSCALLIGILATGALSPL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFF---------RLDDDLYIKISKYNPNNTLQG 172
                   + L      +     L +   +              +    S +     L+ 
Sbjct: 126 SSIMYRQAETLDHVYLRSGGPLNLSDGALWLRQADSGLVPHGVAILHARSVHLQGGVLRI 185

Query: 173 IFIVDSRDTQTHKIYYAQSG-SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
             I   R   T  +          L R+  I  D       P    +   +F        
Sbjct: 186 GGISLFRLDDTDHLIVRIEAPEGYLGRKVWIFQDA--RTIRPDRLPVPAGRFV-MPTDLT 242

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                      +  ++  L                 +R  F   LT  +      L++  
Sbjct: 243 VPRVQESFASPDTLSVWAL-PGFIALLERSGFSSIRHRLHFQTLLTLPILAGTMALVA-- 299

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           A       R+      I   ++  F +F   S +  +  ++    P+L  +    + + L
Sbjct: 300 AGFSMRPTRRGGVARMIGSGVAAGFALF-TISKVAAQFGESGAMPPLLAAWAPTGAGLCL 358


>gi|103487658|ref|YP_617219.1| permease YjgP/YjgQ [Sphingopyxis alaskensis RB2256]
 gi|98977735|gb|ABF53886.1| permease YjgP/YjgQ [Sphingopyxis alaskensis RB2256]
          Length = 366

 Score = 93.9 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 120/361 (33%), Gaps = 12/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
           ++  LY+ R            +V I   + +L     + +      + + +  G  +P +
Sbjct: 10  RTMALYVGRLFLFRTFAILFALVLILQTLDLLGESGKILAVPGNGDSDVWRYVGMRMPQI 69

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   + T   + ++N+N+E++ +   G S   ++ P+   A+L++   F     
Sbjct: 70  IETFLPFSVLLGTILTMVTLNQNSEVVAMKAAGMSAHQVLAPLFLAALLVAGISFAFNER 129

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN---PNNTLQGIFIVD 177
           I  +  + +          +       +  +  D D  I         P   L+G+ I +
Sbjct: 130 IVTRSTAALGAWQKVEYKRVPVDSGVRSNIWVRDGDDLINAETVETSGPAVVLRGVTIYE 189

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                   +  A S          +       R S  S  +  +              + 
Sbjct: 190 RTRGVLSSMLSADSARALPGGGWEM---ANARRFSRRSGTLEPLGTIVAAPNVRPDQFTL 246

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +  ++     L     ++       ++  +     +++  L  ++  L+  VAA   A
Sbjct: 247 ADVDGDELPFLKL-KAAIDDLEAAGRPVDALKGVLWHKISGPLSAILMPLLGAVAAFGLA 305

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFLLMIKK 356
             R  K      I +++ F  F   ++ +  +     Y P L  +  F + ++   MI  
Sbjct: 306 --RSGKLFVRAIIGMALGFAYFVADNFAL-AMGDLGAYSPFLAAWGPFILFALIGEMILI 362

Query: 357 K 357
           +
Sbjct: 363 R 363


>gi|119476402|ref|ZP_01616753.1| hypothetical protein GP2143_08124 [marine gamma proteobacterium
           HTCC2143]
 gi|119450266|gb|EAW31501.1| hypothetical protein GP2143_08124 [marine gamma proteobacterium
           HTCC2143]
          Length = 353

 Score = 93.9 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 113/357 (31%), Gaps = 5/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI   I  S L+    ++ +  +  I+  +  + S        L+   Y +P  
Sbjct: 1   MNKLGRYISTTITASTLLVLFMLLGLDAIAAIVDEMGYL-SGNYDFVAALRFVIYSVPAT 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + PF   +     L ++   +EL+++ + G S + ++  V+   I++ I   +    
Sbjct: 60  MFDLLPFAALVGCLAGLGTLASGSELVVMRSAGVSTLRIVWMVMRPIIVVMIAGMLVSEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S  K   A A          E L+ R  +      +                  
Sbjct: 120 VAPVTESIAKSERAIALKKSQNIVSREGLWHREANRFMHFNAVQPNGILYGVTMYQFDEQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +     YAQ           +L D      +           K ++ +      + ++L
Sbjct: 180 HKPQSTLYAQRAIYQSGE--WLLEDVVESIITDTRVRKIASPSKPWSTELSPELLNILML 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D +++   +   N    +      YR  F K++ Q L  +   L++I          
Sbjct: 238 DPIDLSIAG-NDQYANYLQAQGLNSSPYRLAFWKKILQPLSTLALVLLAISFIFGPLREV 296

Query: 301 QRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  I + + I F       +         P Y  ++ + +  +  ++ L   +
Sbjct: 297 TMGYRIFIGVLVGIVFRTAQDILAPASLVYGFQPIYASLIPIVICAVLGLWFLRRAR 353


>gi|107023405|ref|YP_621732.1| permease YjgP/YjgQ [Burkholderia cenocepacia AU 1054]
 gi|105893594|gb|ABF76759.1| permease YjgP/YjgQ [Burkholderia cenocepacia AU 1054]
          Length = 364

 Score = 93.9 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 123/364 (33%), Gaps = 16/364 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTASAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLITFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKMIRARFQQRDEISLLAPGQFRESAANHRVFFIEKMSPDQSKVQNVFVTSTEN 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + +     + ++L DG  +  +P   +  IM+F+ Y ++  S   + +
Sbjct: 182 GKVNVVVSQTGHTETSKDGDRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSKPVTNV 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRA 297
               +      L NP  +N            +EF  R    L  +   ++ I  +     
Sbjct: 242 QTTNSTPTPDLLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIPLSYQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    + I          +  L++ +  I +    +  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHVVVAAIVAFIFWLRVRN 350

Query: 358 YTKI 361
              +
Sbjct: 351 RPLL 354


>gi|332524895|ref|ZP_08401082.1| hypothetical protein RBXJA2T_03768 [Rubrivivax benzoatilyticus JA2]
 gi|332108191|gb|EGJ09415.1| hypothetical protein RBXJA2T_03768 [Rubrivivax benzoatilyticus JA2]
          Length = 370

 Score = 93.9 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/370 (11%), Positives = 113/370 (30%), Gaps = 13/370 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++    + R I  S +   L  + + + I +++++  V  +  +  + +  +   +P  
Sbjct: 1   MRTVRRLLYRDIVASVVFVALAFLSLFFFIDLVEKMGNVGRAGRTTGVAVMSALLELPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    + T   L  + +++E  I+   G      +  +  L ++     F   + 
Sbjct: 61  FYELMPIAVLIGTIYSLARLAQSSEFTILRTGGLGPGRALSLLAVLGVVFGAITFAVGDY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD------DLYIKISKYNPNNTLQGIF 174
           + P        + A A   +        L  +                            
Sbjct: 121 VVPVAERKAVAVKALAAGGMRVGRTGAWLKEKRMTPEGERSYSVNLAGTTPDGRLSGIRI 180

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS----YTLQT 230
                D +      A++G++  D    +             ++ + +  +         T
Sbjct: 181 FEFDADGRLSVRIAAKTGTVAADGTWTLSEAEVTRWPDVRLREPAGVVEQRLPELRWAST 240

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            +       +   +   +  L     + + + +  ++Y   F K+    L  ++   +++
Sbjct: 241 LTPEVVAAAVMPRETMTTADLWRYSVHLSDQAQATQSYEILFWKKALYPLACLVMTALAL 300

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL---YLFLFCIS 347
             A   A            I L ISF +    +  +  +     +I       L+L    
Sbjct: 301 PFAYLHARAGSVSLKVFGGIMLGISFVLLNNLAGHVGLLRDWTPWIAAATPSLLYLLMSL 360

Query: 348 SIFLLMIKKK 357
           + F  +++ +
Sbjct: 361 AAFTWLVRYR 370


>gi|187922984|ref|YP_001894626.1| permease YjgP/YjgQ family protein [Burkholderia phytofirmans PsJN]
 gi|187714178|gb|ACD15402.1| permease YjgP/YjgQ family protein [Burkholderia phytofirmans PsJN]
          Length = 365

 Score = 93.9 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 123/362 (33%), Gaps = 16/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ +     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++  ++G S    IKP+   A  + I +     +  
Sbjct: 62  IMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F        +   +    +  +   +  +    
Sbjct: 122 PWSNQQSKLIRARFQQRDEVSLLAPGQFRESATSHRVFFIEKMSADQARVENVFVTSTEN 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + +     + ++L +G  +   P   D  IM+F+ Y ++ +S      
Sbjct: 182 GKVNVVVSKTGHTETRKNGDRFVVLENGRRYDGQPGQPDFRIMEFERYGVKIQSQPVVNT 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRA 297
                   L+ L NP  +N            +EF  R    L  +   L++I  A     
Sbjct: 242 PSTTGTPTLTLLRNPTNDNL-----------AEFAWRAGLPLIAINLMLLAIPLAHQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    S+I       P  +  L++ +  I +    +  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQSWIEQGKMSFPVGLVGLHVIVAAIVAFIFWLRVRN 350

Query: 358 YT 359
             
Sbjct: 351 RP 352


>gi|149186433|ref|ZP_01864746.1| predicted permease [Erythrobacter sp. SD-21]
 gi|148830022|gb|EDL48460.1| predicted permease [Erythrobacter sp. SD-21]
          Length = 409

 Score = 93.5 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 124/361 (34%), Gaps = 11/361 (3%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R +    +   +    +  + ++L+ ++ V+     + ++ K+   L+P    +
Sbjct: 8   IDRYIARLVIVPMVGVFVLAASLLVLDKMLRLLDFVAVEGGPVGVVFKMLATLLPEYASL 67

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +        +   +EL +    G S   L++    +  +L          I+P
Sbjct: 68  AIPLGLLLGILLAFRKLATTSELDVFRAVGMSYGRLLRVPFLITGVLMTLNVALVFFIQP 127

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDTQ 182
             R T ++L  + +     + ++   F  L D + ++I +   +   L+GIF   + D  
Sbjct: 128 VSRFTYERLEYELRSGALGASIKVGEFTTLADRMALRIEESEDDGRQLKGIFARVANDKG 187

Query: 183 THKIYYAQSGSI---DLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSST- 237
                 A+ G+      D   IIL   E        S+   ++ F  + L  +       
Sbjct: 188 QVLSISAKEGNFLATTDDPDTIILRLTEGTIVQDTGSQTPRVLTFTRHDLPIDLPAIEEF 247

Query: 238 --IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                   +  L  LL     + N      +  ++ F+ RL + +   +  L+++     
Sbjct: 248 RARGEDEREYILPELLRIGWAD-NQTESKRDASQASFNFRLVEVVMMALMPLLAVALGIP 306

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                    +    I +     V      +      +P     L++  F  +++ L M  
Sbjct: 307 PKRSTSALGVFLSIIMVVAYHKVNQYGEDLAAIGMFDPILA--LWVPFFLFAALILWMYY 364

Query: 356 K 356
           +
Sbjct: 365 R 365


>gi|254294287|ref|YP_003060310.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
 gi|254042818|gb|ACT59613.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
          Length = 368

 Score = 93.5 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 99/343 (28%), Gaps = 19/343 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
              + YI        LM+   I+    ++ +++++  V +    SL    +++    P +
Sbjct: 4   SRIQTYIFWECVAGLLMTLGIILGAILLVDMVEQLRTVGARTELSLLGAFQLTALKAPQL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   + +    + +NR++EL  I  +G S    + P  FLA  L        + 
Sbjct: 64  ILETMPFAILVGSMLAYSKLNRSSELSAIRASGVSAWRFLAPTFFLAAFLGCIAMTIIDP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT----------L 170
           +     +  +                     ++        ++   +             
Sbjct: 124 LATFSNAKYETEKTLLLDDTGAVKDSAKRQKKVWLRQGTDTTQSVIHGEVLPNDNSSLQN 183

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
             IFI++    +        +    L      L     +           +K     L T
Sbjct: 184 VEIFILEKDGDEFEFQRRIDAKKATLRPGFWQLEGVTEYSSDNE-----PIKQDYLALTT 238

Query: 231 ESANSSTIVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
               S+ +    +++++SF   P    +        + Y  + H  L   +      LI 
Sbjct: 239 TLDPSTILDRGTDEKSISFWKLPQLIQDARRAGLDADKYILKLHTLLAMPVLLGAMALIG 298

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
            V      L R       +   +   F +F+            
Sbjct: 299 AVVCL--RLRRSGGVTQLLAAGIGAGFLLFFVNQVSKGLASSG 339


>gi|150395988|ref|YP_001326455.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
 gi|150027503|gb|ABR59620.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
          Length = 360

 Score = 93.5 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/353 (14%), Positives = 112/353 (31%), Gaps = 10/353 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y  +   R+     + I  + ++I   +  + +S+    +++  L ++ + IPT+
Sbjct: 4   NTLGRYFFKRYARTTFWFLIGIFALIFIIDFSELTSRMSNLPHYTVSGALLMTTFRIPTI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF         L S+NR  EL++    G S    ++P +  A++      +  N 
Sbjct: 64  LQQTVPFVALFAAMAALISLNRRYELVVTRAAGISVWQFLRPFVVGALIFGALAVVVINP 123

Query: 121 IEPKCRSTIK--QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           +        +  +    +  +   + +          D  I         T      V  
Sbjct: 124 LAAWGTKKAEALEAEWGSTRSAAANSIPWLRQIYDGTDTIIGARSVQNGGTELINVTVIH 183

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            D Q        + S  L+    +LN           +    M+                
Sbjct: 184 FDPQGAITLRQDAKSAKLEDGYWLLNGVVETEV---GRLPRRMETAQLRTNLRPDFVQER 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           + KA+      L                   ++FH  ++  L  V   LI+   + K + 
Sbjct: 241 LAKADSIQFFDLPRK-IEVARSFGFSTNGLETQFHSLMSLPLLLVAMTLIAACVSLKFSR 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             Q +    + +   +S  V +  + +I     +    P +  +L  + ++ L
Sbjct: 300 FNQSR---SVILGGILSGFVLYVVTVLIKAFGSSGIVPPFVAAWLPVVVAMAL 349


>gi|37528301|ref|NP_931646.1| hypothetical protein plu4480 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787739|emb|CAE16852.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 366

 Score = 93.5 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 138/364 (37%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQVAILFILLLIFFCQRLVEILGAAVEGNVPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +   +E+ ++   G  +  L+   L LA+L S    ++   + 
Sbjct: 62  LILPLSLFLGVLMTFSKLYTESEITVMHACGLGKRVLVVSALILALLTSALAAVNVIWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q+ A A+   + + + E  F   +D   +        N  + +F+   R   
Sbjct: 122 PWSSKYQEQVVADAKANPSLAAIMEGRFKPSEDGNLVLYIGNVHGNKFENVFLAQLRPVD 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  +  G +      +Q ++LN G  +  + + +D  I +F+ Y        S  
Sbjct: 182 NQRPSVVISNGGHMVERPDGKQVVVLNHGTRYEGTAMLRDFRITEFRDYQAIIGHQTSIV 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K   +++  L   N  +           R+EFH RLT  L  +I  ++         
Sbjct: 242 DNNKVEQKSIIQLWQDNDKDS----------RAEFHWRLTLVLSVLIMAMM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   S +           P+++++L   + + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSN-GSKGKLDPMIWMWLTNGTYLMLALVLNI 347

Query: 358 YTKI 361
           +  +
Sbjct: 348 WDTL 351


>gi|213583965|ref|ZP_03365791.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 342

 Score = 93.5 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/342 (12%), Positives = 107/342 (31%), Gaps = 2/342 (0%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
            +M+   +V ++ +I+ + ++                +   +P  + +  P    +    
Sbjct: 1   IMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVPKDIQIFFPMAALLGALL 60

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
            L  + + +EL+++  +G +R+ +   V+  AI L +        + P+     +   A+
Sbjct: 61  GLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQ 120

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSID 195
           A    +    ++ L+ +  ++                     +   +   + YA S   D
Sbjct: 121 AMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYAFNDQRRLQSVRYAASAKFD 180

Query: 196 LDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPN 254
            + +   L+  +     +P     S     ++           + L  +  ++S L N  
Sbjct: 181 PEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHN-Y 239

Query: 255 PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI 314
                   +    Y+     ++ Q L   +  L+++                   IS   
Sbjct: 240 VKYLKSSGQDAGRYQFNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGF 299

Query: 315 SFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            F V       +  +   P  +  L            LM++K
Sbjct: 300 VFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 341


>gi|332704120|ref|ZP_08424208.1| permease YjgP/YjgQ family protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554269|gb|EGJ51313.1| permease YjgP/YjgQ family protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 360

 Score = 93.5 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 119/362 (32%), Gaps = 8/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+LR       +     + +  +  + +R++    +   L I+L      IP +
Sbjct: 1   MSVLSRYLLRQNLYLMSICLCLGIAVYLLSDLFERLDDFLEAGRGLKIMLVYFLVKIPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P  F +     L++M  N ELL +   G S   +I   L  ++  S         
Sbjct: 61  ISQILPAVFLVAMLVQLSAMRSNRELLALRAGGISYKAIISFFLVYSLFWSGGQLFISQY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
           +  K     K++ A+      +     +  +  +D+  + I    P +   + + I    
Sbjct: 121 LGVKGLEYSKRIWAEDVRGKEYVTKTIHKLWLREDNDILHIDTVQPASGKGRNLSIYTLA 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +   + +  + + +      +LND  +      + +       S     +S   +   
Sbjct: 181 QDRRSVVQFINAKTFEAKEGNWVLNDVIIIDPIRFTSEYKPTLKLSLGEAFKSFTLAESR 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                  L  L     +        +E  R+ +H +L+      I  L+++         
Sbjct: 241 NNPAQLPLWELGRA-IHQLEVTGSNVEGLRTIWHGKLSYAFSITIMALLALAIITF---- 295

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
            +      +   L  +F +F+GF  +     +  +  PI   +L     I     +  + 
Sbjct: 296 -EHNVYLNLTAGLVATF-LFYGFFVLGSSAGEMGFLPPIAGAWLGNAVFILGATTRLFWR 353

Query: 360 KI 361
            I
Sbjct: 354 SI 355


>gi|325292486|ref|YP_004278350.1| permease protein [Agrobacterium sp. H13-3]
 gi|325060339|gb|ADY64030.1| putative permease protein [Agrobacterium sp. H13-3]
          Length = 362

 Score = 93.5 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 110/354 (31%), Gaps = 10/354 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y L+    + +   L +  I ++    +    +SS    S+   L ++   +P +
Sbjct: 4   STLARYFLKRYLITAIWFLLGVSAIIYLADFSETARRMSSVPGYSVPGALGLTALRLPLI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF         L S+NR  EL++    G S    I P +  A+ L I   +  N 
Sbjct: 64  LQQTIPFIALFVGMTTLISLNRRYELVVTRAAGVSAWQFILPFVLGAVFLGILSVLVLNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLE---ENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
           I    ++    + A  +   +    +     +         I  +K   +N    + +V 
Sbjct: 124 IAAWGQNRSLSMEAGWRNEGSGGRQQDIIPWMRQSSGGQDTIIGAKSFEDNGTMLLDVVL 183

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +   I   Q            L +G     +         +    +          
Sbjct: 184 IHLDKDGNIVSRQDAKSAKLEDGYWLLNGVAE--TRAGHVPVRQESTRISTNLRREFVQE 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            + +        L +      ++     +   +++H  L+  L  V   LI+   +    
Sbjct: 242 RMTQTETVAFFDLSHKIEVAKSF-GLSSKALETQYHFLLSTPLLLVAMTLIAATVSL--K 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             R  +    I   +   F ++   + ++          P + +++  I ++ L
Sbjct: 299 FSRFAQSRSVILGGIVSGFVLYVV-TVLVRAFGSGGVVPPTVAVWVPVIVALAL 351


>gi|187736000|ref|YP_001878112.1| permease YjgP/YjgQ family protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426052|gb|ACD05331.1| permease YjgP/YjgQ family protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 396

 Score = 93.5 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/372 (11%), Positives = 108/372 (29%), Gaps = 17/372 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + Y+ R    +F+M    +  I  +      +  + +    L    +     +P +L
Sbjct: 8   SILDKYVARTWFTAFIMCTAILTLIYIIGDFADNVGDLMNLDAPLMGTFRFYLSQLPMIL 67

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P+   + T   LT ++ ++E+  +  +G S + +  P++  A+  SI+  I     
Sbjct: 68  NLILPYTLLLGTLWALTKLSSSSEITGMLQSGRSLLRINTPIIIGAVFASIYFGIFGFHW 127

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-----V 176
            P      K + +           +  ++    +     +      ++    F       
Sbjct: 128 APNSALYRKLMFSSLSQNKNNHASQSTIYKNDAESRIWYLGNPPGIDSPGNPFRQVRVEQ 187

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI---------SIMKFKSYT 227
            S   +     +A   + D   +            S                  +     
Sbjct: 188 FSAPGKMKYELFADEATWDPASRTWTFRQAIKRNYSQEEPRQLHDVPVFAGQEYQTLKEH 247

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
                    +  ++ + Q    L      +       L + ++E+H R+ +    +I   
Sbjct: 248 YPETPWQLISPNVRVDTQGTPAL-QELIKSGTTNARYLRSLQTEWHVRIARIFSCIILTF 306

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
           I+I +A      R+             +  +F    +               ++     +
Sbjct: 307 IAIPSAIT--FQRRSAMSGIGIALFLAAAMLFLYEFFPTLASAGYLPTWLGAWMPNIIYT 364

Query: 348 SIFLLMIKKKYT 359
            I + + + K  
Sbjct: 365 IIAIRLFQTKLA 376


>gi|188532528|ref|YP_001906325.1| Putative permease [Erwinia tasmaniensis Et1/99]
 gi|188027570|emb|CAO95417.1| Putative permease [Erwinia tasmaniensis Et1/99]
          Length = 366

 Score = 93.5 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 128/361 (35%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLTLLGLGVPQMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  +  L+K  + L +  ++   ++   + 
Sbjct: 62  LILPLSLFLAILMTLGRLYAESEITVMHACGLGKSVLVKAAMILMLFTALLAAVNVGWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+     + L    F +  D   +   +    +T   +F+   R   
Sbjct: 122 PWSSRYQNEVLQNAKANPGAAALAAGQFQQSGDGQSVLFIENVKGDTFSNVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  ++ G +       Q + L+ G     + + +D  I  FK+Y         + 
Sbjct: 182 NARPSVVVSEHGHMEQRRDGSQVVTLDQGTRFEGTALLRDFRITDFKNYQAIVGHQVVTL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               +   +L  L + +  +          +RSE H RLT     +I  L+         
Sbjct: 242 DPNDSEQMSLDTLWHSDKPD----------FRSELHWRLTLVFSVLIMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   S +           P + ++   +  + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLVFFLLQSSLRSS-GDKGRVDPAIAMWTVNVVYLALAVLLNA 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|297170682|gb|ADI21706.1| hypothetical protein [uncultured Verrucomicrobiales bacterium
           HF0130_14P10]
          Length = 392

 Score = 93.5 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/396 (10%), Positives = 105/396 (26%), Gaps = 44/396 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + YIL    + F +S + +  +  +                   +     +L+P+ 
Sbjct: 1   MSTLDRYILAEWLKVFGVSLIVLTGLLVLQDAADHAEDFRQGFAGAGEVATYYAWLVPSY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP + P    + T  V+ ++ RN E+ ++   G + + L + +L  A+LLS   +     
Sbjct: 61  LPWLLPIALFVSTLFVVATLRRNNEIAVLRACGVNVLRLSRSLLVTALLLSALSYGLNAK 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ--GIFIVDS 178
             P      + L    +          N              +     T    G+ +   
Sbjct: 121 WSPLAMEKSQGLLEVLRGKSDHRNFVSNFDMSPPKTNRRWFFRKFFAVTSSGAGVHLYSR 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK----------SPISKDISIMKFKSY-- 226
                         +   +       +G                     +   +F     
Sbjct: 181 TTGGRDSFRIRAEKAFRDEDGCWRFLNGRFIGFAGPRGLPVPSESGEGLVWEAEFAEQDS 240

Query: 227 ---------------------TLQTESANSSTIVLKANDQNLSFLLNP-NPNNPNYRPEL 264
                                 ++ +      +  K ++ ++  L    + +        
Sbjct: 241 SSDGFSSVPILNKQFSSLRLPDVREDPEPFLLMRKKPSELSVRELKTIVDASEVTEGNAA 300

Query: 265 LETYRSEF-HKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
           +  Y     H         ++   + I  A        R     +  +L +  G +   +
Sbjct: 301 VRPYAIRMGHAFWASP-GCLLAVALGIPFALVGN---GRSAAAGVARALGLCVGYYVART 356

Query: 324 Y---IIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               +         +   + + L  I +++ L   +
Sbjct: 357 MGDSLGEAGIIPIEWAAGVPVLLLGIVAVWFLWRVR 392


>gi|217977121|ref|YP_002361268.1| permease YjgP/YjgQ family protein [Methylocella silvestris BL2]
 gi|217502497|gb|ACK49906.1| permease YjgP/YjgQ family protein [Methylocella silvestris BL2]
          Length = 380

 Score = 93.5 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 55/367 (14%), Positives = 121/367 (32%), Gaps = 12/367 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +   LY+ + IG + L+    +     +  + Q +   +     L   L      +PTVL
Sbjct: 3   RLLTLYLAKRIGVTALLIEAMLCIPLVMTSLFQTLPAAAIRGGLLWPAL---LGTLPTVL 59

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +      + M+ +  + ++ +   S  +L  P L +A       +   + I
Sbjct: 60  YLALPLSVGVAVALEFSRMSSDGMIAVLYSIRLSVWSLCLPALIVAAAAVGAGYALSSYI 119

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEE-NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR- 179
            P     +  +    + +L    LE  + +        +   ++   +   G+FI     
Sbjct: 120 APSYVGQMHDVIHVIRNSLNHRMLEPAHFYTFDKGARTMFFQRWRSADVAAGMFIYQYSA 179

Query: 180 DTQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN--- 234
           +    +I  A+      + Q   I+LN G +      ++ +    F+ Y L  +      
Sbjct: 180 EKNEEQIINAEEAEFRRNEQGVVIVLNHGSIQTLPSGAQAMRNANFEQYALPIDMQGAGA 239

Query: 235 -SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                     +  L       P    + P     + SE  KR    +  +   L+++   
Sbjct: 240 LPKRDWRGVFELPLGDFFAAIPPE-RWDPRGYAEWMSEAAKRCFIPILALTHALLAVGLV 298

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              A    R         L+I              + +NP+ I ++ L +     + L +
Sbjct: 299 LTVAAATGRGSAATTSTVLAIPLIHVAILVGSESIVRENPHLIWLIALAIAAELGLALFL 358

Query: 354 IKKKYTK 360
           I ++  +
Sbjct: 359 IARRNAR 365


>gi|298291095|ref|YP_003693034.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
 gi|296927606|gb|ADH88415.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
          Length = 361

 Score = 93.5 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 109/359 (30%), Gaps = 14/359 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           ++  +Y  R    + L   +    +  +I +L+    V         L+ +  Y +P   
Sbjct: 4   RTLGVYFGRRFLGAVLGIFVGCAGLIMLIDLLELSRRVGERDVDFGTLMLLVVYRMPFFT 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF           +++R  EL++    G S    I P   LA+LL +F     N +
Sbjct: 64  EQLLPFAVLFGAIGTFLTLSRRLELVVARAAGISAWQFIAPACLLALLLGVFSTTVYNPV 123

Query: 122 EPKCRSTIKQLSAKAQLA------LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
               +    +L A+          +T               +    +  +    L G+ +
Sbjct: 124 SADFKDRASRLEAEIFNRQTGLFAMTTGGFWMRQQSVDGQAIIQAAATSDGGRQLTGVNV 183

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                            +I       +           ++  I + ++ +Y L T    +
Sbjct: 184 FLFGADDKLTERIEAVRAILEPGAWRL------EHARVLTPGIGLQEYDAYMLATNLTPN 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  +D    + L    +         E YR ++   L + +  +   LI+   +  
Sbjct: 238 QVQETLQSDTVPFWQLPAAIDAATRVGFGAERYRLQYQSLLARPMLLLAMVLIAASVSL- 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             + R       I   ++  F ++          E    +  I   F   + ++  ++I
Sbjct: 297 -RVFRFGGIGQTILGGVAAGFLLYVSTKLAEDLGEAGIVHPVIAAWFPAVVGALMGILI 354


>gi|194290553|ref|YP_002006460.1| permease, yjgp/yjgq family [Cupriavidus taiwanensis LMG 19424]
 gi|193224388|emb|CAQ70399.1| putative permease, YjgP/YjgQ family [Cupriavidus taiwanensis LMG
           19424]
          Length = 392

 Score = 93.5 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/392 (12%), Positives = 125/392 (31%), Gaps = 38/392 (9%)

Query: 1   MKSF---ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           M+     E Y  R +   F      ++ +     +L  +  V ++  +  + L       
Sbjct: 1   MRILRVYERYFGRLVYGVFAFILFAVLSLFVFFDMLNELENV-NAQYTSLVALFHVLLQA 59

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           PT +  V P    +    V + +   +E  I    G +    +  +  LA+ L++  FI 
Sbjct: 60  PTRVYEVLPIAVLISAIYVFSQLASQSEYTIFRVAGLNTRQALFSLFKLAVPLALVTFIF 119

Query: 118 ENIIEPKCRSTIKQLSAKA---------QLALTFSYLEENLFFRLDDDLYIKISKYNPNN 168
              I P+     +++  +A         +  +     +++     +   ++ ++   P+ 
Sbjct: 120 GEFIGPRAEQYAQKVKLEAIGATVSSGFRSGVWVKDRDKDPAGDGEITRFVNVAGLRPDQ 179

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP--------------- 213
           T+ GI + +       ++            Q+  L +    R                  
Sbjct: 180 TITGITMYEFDPQYRLRVIRVAQEGRYQGGQSWELQNVSETRFVELAPHAQGAQPAAATP 239

Query: 214 ------ISKDISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE 266
                        +KF    + +E +    +++L   ++  +  L     +     +  +
Sbjct: 240 PRDALAPDFRAEQVKFPRVAMHSELTPQILSVLLVTPERMSTLDLFRYIRHLRDNKQDTQ 299

Query: 267 TYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYII 326
            Y   F K++   L   +   +++  A   A            I L +SF +       +
Sbjct: 300 RYEIAFWKKVIYPLTLFVMVALALPFAYLHARAGAVGVKVFGGIMLGLSFHLSNTLFSHV 359

Query: 327 HKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +     + PI+   +     + + ++  ++
Sbjct: 360 GLLH---TWPPIISALVPGTLYLMVALLALRW 388


>gi|182677588|ref|YP_001831734.1| permease-like protein [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633471|gb|ACB94245.1| permease-like protein [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 386

 Score = 93.5 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/364 (12%), Positives = 116/364 (31%), Gaps = 12/364 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +   LY+ R I  S LM    +     +  +   +   +       ++       +PTVL
Sbjct: 3   RLLTLYLTRRIALSVLMIEASLCLPLVMTSLFSALPPAAVRG---GLIWPALLGTLPTVL 59

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +        M     + ++ +   S  ++  P + +A++   F +   + +
Sbjct: 60  YIALPMAVGIAIALEFYRMASEGMIAVLYSLRLSVWSICLPGIVIAMVCVFFGYFVASFV 119

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEE-NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            P     +  +    + +L    LE  + +   +    +   ++  ++ + G+FI    D
Sbjct: 120 APNYVGQMHDVVHVIRNSLNHRMLEPAHFYTFDNGSKTLYFQRWRSSDVVSGMFIHQFSD 179

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA---- 233
            +  +     S      + +   ++L+DG +  +   +  I    F  Y +  +      
Sbjct: 180 EKKEEEIITASIAEFRRNENGVMLVLSDGSIESRPEGATAIHTAHFDEYVIPIDMQGTGG 239

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                     +          P   +  P     + SE  KR       +   ++++   
Sbjct: 240 MPKRNWRGVFEVPALEFFRERPQQAD-DPRRFSEWTSEATKRFAVPFLALSHTILAMGLV 298

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              A    R     +   + +              + Q+P  + ++ L +     +   +
Sbjct: 299 LTLANATGRSTKAGLTAFIVVPLAHILILIGAETLVRQDPRLVWLVGLAIAAELGVGCYL 358

Query: 354 IKKK 357
           + +K
Sbjct: 359 LYRK 362


>gi|119513620|ref|ZP_01632629.1| permease YjgP/YjgQ [Nodularia spumigena CCY9414]
 gi|119461725|gb|EAW42753.1| permease YjgP/YjgQ [Nodularia spumigena CCY9414]
          Length = 385

 Score = 93.5 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/378 (12%), Positives = 120/378 (31%), Gaps = 22/378 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQI-LQRINLVSSSTESLNILLKISGYLIPT 59
           +   E Y++  +    L S   +  +A  I I  ++   +     +  IL+ +    +P 
Sbjct: 10  LSLLERYLISELIPPLLFSIAIVTIVAESIGISFEQFKFLIERQLTFEILIYLHLLKLPE 69

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            +    P    + T      ++  +E++ I + G S   L+ P + +A LL   LFI   
Sbjct: 70  FIVFAAPIAVLLATIFTYKKLSNTSEIIAIHSCGVSLDKLVYPAVMVAALLIPVLFIFNE 129

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-------------YIKISKYNP 166
           +I             KA       + + ++F++  D+              ++  ++   
Sbjct: 130 VIVIPANYKAAITLEKAMNINRLYFQKNDIFYQQIDNENTLDSLAQQNYLKHLLYAERFA 189

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
           +  +Q + ++     +   I  ++       ++     +G  +  +        +KF + 
Sbjct: 190 DGQMQQVTLLMRDSEKLKVIIKSRFAECYGQQKFCYFYEGVKNIINADGSYGERIKFDTM 249

Query: 227 TLQTES----ANSSTIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
            L   +           L   + N+  +                 + +    +R T  + 
Sbjct: 250 PLYLPNIALQLQIDQETLDNREMNIFQVYQRLLVFQKAGDRRNFRSLQVNIQERFTLPVS 309

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
             +F L+            +        ++L I              I         ++L
Sbjct: 310 CAVFALLGSAIGINLQPRTRYNSFS---LTLGIILLYDAIQVIAKIFIISEIISFSWIWL 366

Query: 342 FLFCISSIFLLMIKKKYT 359
                +++ + ++ KK +
Sbjct: 367 PNIVGTTVGVYLLIKKNS 384


>gi|221066429|ref|ZP_03542534.1| permease YjgP/YjgQ family protein [Comamonas testosteroni KF-1]
 gi|220711452|gb|EED66820.1| permease YjgP/YjgQ family protein [Comamonas testosteroni KF-1]
          Length = 369

 Score = 93.5 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 129/365 (35%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + ++ +   + +++ +      + S + ++ + G+ +   LP
Sbjct: 2   LFDSSIRKELARSFGATAVVLITVVMTMMLIRTLGQAYKGSVSPSDVMLVMGFTVLGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I    G    +L+KP+L  A  + +   +    + 
Sbjct: 62  TILGLSLFVAIVGSLSRMYRDSEMVIWFAAGQGLASLLKPLLRFAWPVILITAVLALGVL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     I+Q+  + Q       +    F        +     +  + +    +       
Sbjct: 122 PWSYQQIEQIKTQFQQRSDLDRIAPGEFQESAGGTRVFFVDKDSPSDMAASNVFVVSRDP 181

Query: 183 THKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +   +  G+   +   ++ +IL DG+          + I +FK Y +Q ++ N   I 
Sbjct: 182 GKESVTSAKGAHLAVIKGQRMVILEDGQRMETRSDDGSVRITEFKEYGVQVDNDNPVAIE 241

Query: 240 LK-ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A       L+                 RS    RL      + F ++ +      ++
Sbjct: 242 EMAARSMPTKDLI----------GMDEPIARSVLAWRLGLPFAALNFVILGLAI---SSV 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY----YIPILYLFLFCISSIFLLMI 354
             +      + I+L      +   +     +  N       + +L+  +  +S + LL  
Sbjct: 289 NPRAGNSSSLMIALFAFIVYYNLMTLGESWVSANKIGMWGILGLLHGSILTVSVLVLLAR 348

Query: 355 KKKYT 359
             +++
Sbjct: 349 HFRWS 353


>gi|329890121|ref|ZP_08268464.1| hypothetical protein BDIM_18180 [Brevundimonas diminuta ATCC 11568]
 gi|328845422|gb|EGF94986.1| hypothetical protein BDIM_18180 [Brevundimonas diminuta ATCC 11568]
          Length = 342

 Score = 93.1 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 121/324 (37%), Gaps = 6/324 (1%)

Query: 36  INLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS 95
           + ++    +S+ +++K++   +P ++ ++ P    +     LT + R  EL      G S
Sbjct: 1   MEVIVERGQSVWVMVKLTLLALPQLIAVILPIGLFVGALIALTRLQREQELTAAYAAGVS 60

Query: 96  RITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD 155
           R  LI+P L +A+++++   +    ++P  +   ++ +   +  L    +EE  F +  D
Sbjct: 61  RWALIRPALQIALIVTVISLLVNVFVQPWAQREGRRQAFAIRTDLAALLVEEGRFVQGPD 120

Query: 156 DLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPI 214
            L + + +   N  ++ +F+               +    +D    + + +G + R S  
Sbjct: 121 GLTVYVQQIEQNGLMKNLFVYLDNGKTVTTWDAETARFGRVDGLPVLTMQNGSMQRYS-S 179

Query: 215 SKDISIMKFKSYTLQTES--ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEF 272
            + ++ + F             S  I  K +D  L+ L +P P              +E 
Sbjct: 180 REVLNQLSFDQQVFDLSPYAKTSERIRFKPSDLWLTDLFDPTPALLETAG-TRGELAAEG 238

Query: 273 HKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
           H RL   L+ +     ++ A    A  R          + +    +      ++     N
Sbjct: 239 HSRLASPLYALAAMAFALAAILGGAFSRSGYAGRIARAAGAFLV-LRVIGYGLVAGSAWN 297

Query: 333 PYYIPILYLFLFCISSIFLLMIKK 356
                + Y+     + + L ++ +
Sbjct: 298 GALNVLQYVVPLAATFLALRILFR 321


>gi|262038164|ref|ZP_06011561.1| permease, YjgP/YjgQ family [Leptotrichia goodfellowii F0264]
 gi|261747812|gb|EEY35254.1| permease, YjgP/YjgQ family [Leptotrichia goodfellowii F0264]
          Length = 358

 Score = 93.1 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 117/356 (32%), Gaps = 13/356 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI+    +SF +  +    I  + + +     +     +L   +K   Y IP +
Sbjct: 1   MNKLDKYIILNYIKSFFLGMMMFFLIFILAESINLTGWIMDGKFTLGEAVKYLSYGIPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   ++ M +  E+  +   G S + + K  L  +  +S+ +      
Sbjct: 61  VTNTAPLGILLGSLLAISKMAKQLEITAMKTGGISFLRIAKFPLIFSFFVSLSVLYVNVD 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQGIFIV 176
           I  K  S    +            +E+N      D         ++K +       I  +
Sbjct: 121 ILGKSNSKKSNMKLLKLEQAEPVKVEKNFILVKIDKNRILYSGYVNKKDGIMREVEIIEM 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                    +Y A  G+++         + + H     +     +    + L+    +  
Sbjct: 181 ADEFKNVKTVYTASEGALEKGTDNWTFTNLKEHNIM--TNVSKNIDPGVFKLKIPIDDIL 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              +KA +  +  L            + ++    +F+ R++  L   +   I +      
Sbjct: 239 ADPVKAKNLTMPELREKIVYFTRVGADSID-LLIDFYYRISFALASFVMCFIGLSLG--- 294

Query: 297 ALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              R  +    + I LS+  G  ++GFS I+  +         +  FL  +  + +
Sbjct: 295 --SRYVRGGAAVNIGLSVIIGYSYYGFSTIMKSLASTGTIPVYIACFLPLLIYLGV 348


>gi|71908694|ref|YP_286281.1| permease YjgP/YjgQ [Dechloromonas aromatica RCB]
 gi|71848315|gb|AAZ47811.1| permease YjgP/YjgQ [Dechloromonas aromatica RCB]
          Length = 360

 Score = 93.1 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/360 (10%), Positives = 118/360 (32%), Gaps = 19/360 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE    R   ++     + ++ I     +++ +   +    +   +  + G+     +P
Sbjct: 2   IFERAARREFAQAAAGISVALLAILTSTNLIRLLKEAAGGRIAPEAVASLLGFSALNFMP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +     L+ + R++E+++  ++G      + PVL  A  + I + +    + 
Sbjct: 62  VLLSLTLFVSVLLSLSRVYRDSEMVVWFSSGLPLTGWVSPVLRFAAPIVIAIAVVSGFLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   S+  +   K       S +    F  +     +   +    +      +  +   +
Sbjct: 122 PWANSSSAEYREKLSARSELSQVSPGAFREVKKGQRVFFVEGVEGDGSHVGNVFVASYQE 181

Query: 183 THKIYYAQSGSID----LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                               + ++L  G  +   P +    +M+F+ Y  + E    S  
Sbjct: 182 GKLGVIMSDSGYQEASGNGDRFVVLEHGRRYEVEPGTPAFKVMEFERYRARVEDGEPSPS 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            +      ++ L+  +              R E   R+   +  ++  L++I       +
Sbjct: 242 DVSPKGMPITRLVLED----------SNPARGELLWRVGLPVSALVLCLLAIPL---SYV 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIKK 356
             +  +   + I++ +        S     +   +  +++ +    +  +  + LL  ++
Sbjct: 289 NPRAGRSANMLIAILVYAIYNNLLSVSQAWVAQGKMSFWVGLWAAHVLMLLPLVLLFYRR 348


>gi|297182283|gb|ADI18452.1| predicted permeases [uncultured Oceanospirillales bacterium
           HF4000_13G19]
          Length = 354

 Score = 93.1 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/360 (12%), Positives = 125/360 (34%), Gaps = 28/360 (7%)

Query: 14  RSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMET 73
            + ++    +V +    + ++ +   ++   + + L  +  + +P  L M+ P    +  
Sbjct: 1   MTTVLVTFILVMVLVSGRFIKYLAEAAAGQIAADALFLVMAFRLPEFLQMILPLSLYIAI 60

Query: 74  TNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS 133
             VL  M+ + E++++   G     +++ ++  A++    + +    + P+  + + ++ 
Sbjct: 61  LLVLGRMHMDNEMVVLRAGGQGDGRVVRSLIVPALVAMSVIALFALYVTPQGDAEVNRIF 120

Query: 134 AKAQLALTFSYLEENLFFRLDDDLYIKI--------SKYNPNNTLQGIFIVDSRDTQTHK 185
            + +       L    F    DD   +          +    N         S +     
Sbjct: 121 EEQKGRSVLELLTPGRFHVKGDDDNQRATYAESLNREEGVLENVFVADASFSSEEAGRLL 180

Query: 186 IYYAQSGSIDLDRQAIILN--DGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
             +A+SG++        L   DG  ++  P   D   + F+   ++  S  SS+   +  
Sbjct: 181 TVWARSGNLVQQDGISYLELTDGYQYQGKPGEADYREVAFEKARVRIGSERSSSRPPEVR 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
            ++   L++          +      +E   R +  L   I  L    A     +  ++ 
Sbjct: 241 GRSTLDLID----------DGGNQAMAELAWRWSLVLTVPIMCL---AAVPLSRVNPRQG 287

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQN-----PYYIPILYLFLFCISSIFLLMIKKKY 358
           +   +  ++            +   I +      P+Y  ++++ L    ++F+L    + 
Sbjct: 288 RFLRMIPAVLGYMLYVGLLLTMRSWIAEVPGSERPWYYSMVWIHLIAGFAVFMLYFGGRL 347


>gi|325295268|ref|YP_004281782.1| permease YjgP/YjgQ family protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065716|gb|ADY73723.1| permease YjgP/YjgQ family protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 361

 Score = 93.1 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 125/355 (35%), Gaps = 15/355 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    YI   I R F+++    +F+  + +       V     S+   L +    IP  L
Sbjct: 4   KIIHRYIFLEILRVFILTLGLFIFVILMDRASSIAETVFGQGVSILNFLSVLVKGIPAFL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P  F +    V   +  N EL+ + + G S   L KPV+FL +  SI  F S   +
Sbjct: 64  GMTIPMAFILSVLIVFIQLGNNNELVALKSCGVSTKELSKPVIFLGVAFSILSFYSLMFL 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK    +K+   +         +    F      +   + K  P       F+V     
Sbjct: 124 MPKSNVAMKKEIEELVKKKITMSISPKNFSSNFPGVTFYVEKLYPEKGYLENFMVSLVKK 183

Query: 182 QTHKIYYAQSGSIDLDRQAIIL--NDGEVHRKSPIS-KDISIMKFKSYTLQTESANSSTI 238
                 +A+ G +  ++  + L   DG     +    ++  ++ FK+YT++         
Sbjct: 184 DELITIFAKKGMLRTEKDTVFLDIQDGTGEFINWKKPENFKVLNFKNYTVKLYRFTKREK 243

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                 + L  L++ N              + E  KRL   L P+I G+++   A     
Sbjct: 244 FESIRYKTLPELISSNRIEA----------KVELFKRLGLSLAPLIVGILAFSLALIIPR 293

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                 I    + + + + ++     I   +      +P+L    F +   FL +
Sbjct: 294 SSIGIGILLSLLIIVVYYILYTLTKKI--ALNTGIVLLPLLTDLFFFVLGGFLYI 346


>gi|149914657|ref|ZP_01903187.1| permease, YjgP/YjgQ family protein [Roseobacter sp. AzwK-3b]
 gi|149811450|gb|EDM71285.1| permease, YjgP/YjgQ family protein [Roseobacter sp. AzwK-3b]
          Length = 363

 Score = 93.1 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 107/359 (29%), Gaps = 14/359 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +  LY+ R    +FL      V + ++I I++ +    +     + +L+I+    P+   
Sbjct: 2   TLHLYLARRFLLTFLAIFSVFVILLFLIDIVKEMQDFPA--FPFSEILEIALLKAPSANY 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   M+RN+EL+++  +G S I  +   L +A L+ +      N I 
Sbjct: 60  EILPLIVILATVALFLRMSRNSELVVVRASGRSAIRALVAPLVVAGLIGVVSVTMLNPIV 119

Query: 123 PKCRSTIKQLS-----AKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
                    L          +                    I   + + + +        
Sbjct: 120 AASAKRHNDLMNSYLGWSINIMAIAPEGLWLRQGSETGQTVIHAERASSDVSTLYNTTFI 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI---SKDISIMKFKSYTLQTESAN 234
           +            + S  L      L D ++   S           +   S         
Sbjct: 180 AFGLDGTPQRRITAASATLGDGEWRLADAKLWDLSSGINPESTAQELDSYSVPSALTQDR 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K    ++  L                 Y       L + LF +   +    AA 
Sbjct: 240 IIDSFGKPEYISIWDL-PKFIGQLEESGFSARRYAVWMQTELARPLFLIALVM--AAAAF 296

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                R       +  ++ + FG+ +  ++    + +N     +L  +   +++  L +
Sbjct: 297 TMRHSRLHNTGVSVLTAIMLGFGLHYIRNFAQ-ILGENGQIPIMLAAWAPPVAAFLLAL 354


>gi|220916597|ref|YP_002491901.1| permease YjgP/YjgQ family protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954451|gb|ACL64835.1| permease YjgP/YjgQ family protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 360

 Score = 93.1 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 110/356 (30%), Gaps = 13/356 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +FL++   +V I   +  +   +  + +   L  +L++  Y    V+ 
Sbjct: 2   ILFRYVARRMLGAFLVALTGVVGIYLAVDFVDNASAYTGAGW-LPAVLQLYAYKAAGVVY 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           MV P    +      +   +  E   +   G     L  PVL + +L    L +  +++ 
Sbjct: 61  MVAPAALILGAGIATSMFRQTREYTAMRAVGLGPWRLAVPVLAVTLLAGGVLVVLNDLVG 120

Query: 123 PKCRST------IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            +           +            +   +  F  +D      +    P+   + + + 
Sbjct: 121 VQAAERAEEITAHRFARGGNLRRFLAAREPKRWFRGMDGKRVYHLRGNLPDGGFERVTVY 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD-ISIMKFKSYTLQTESANS 235
                         +  +  D +A IL D E           +     K Y         
Sbjct: 181 -ELGEGFTLARRIDAARMHPDGRAWILEDVEDRTFRQDGSMGLERADRKRYAFDEPPDAF 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           + I  K +    + L+           + +  ++ E + RL   L  +      +  A  
Sbjct: 240 AVIAGKPDQMRWNTLIRQ-IGIRKRLGQPVTEFQLERYDRLAYPLAGI--PGALLALALA 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               R+      +  ++ ++  +FWG   +   +  +    P +  +   +  + L
Sbjct: 297 LRRDRKGHLAAALLEAVGVT-LLFWGMQGVSSALGLSGRVAPWIASWAPNVVFLAL 351


>gi|83746689|ref|ZP_00943738.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
           UW551]
 gi|207721411|ref|YP_002251852.1| permease protein [Ralstonia solanacearum MolK2]
 gi|207742608|ref|YP_002259000.1| permease protein [Ralstonia solanacearum IPO1609]
 gi|83726642|gb|EAP73771.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
           UW551]
 gi|206586570|emb|CAQ17157.1| permease protein [Ralstonia solanacearum MolK2]
 gi|206594002|emb|CAQ60929.1| permease protein [Ralstonia solanacearum IPO1609]
          Length = 387

 Score = 93.1 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 115/364 (31%), Gaps = 20/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     L ++       +++ + + ++   S N +L + G      L 
Sbjct: 17  IFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLATLGYLA 76

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++    G S    I+PVL  ++   + + +      
Sbjct: 77  ILLCATLFISVLLVLTRWYKDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVALLALFGW 136

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P           + +     S +    F       Y+   +           +  +    
Sbjct: 137 PWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANAEA 196

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT-ESANSST 237
                      +  ++    + ++L+ G  +  +P   D  I++F  Y ++         
Sbjct: 197 DKIGVALAKTGEFKTMPNGDRYVLLDKGRRYEGTPGQLDYRIVEFDRYGVKVASKPPQVD 256

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             L    +  + LL+                  E   R+   L  + F LI++  A    
Sbjct: 257 ANLPTKSRPTTELLS----------NPTPENLGELVWRIGLPLLALNFVLIAVPLAY--- 303

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIK 355
           +  +  +  P+  ++ I        +     +   +    +    + L       LL   
Sbjct: 304 VNPRLGRYTPMIFAVLIYLTYSNLLNLSQAWVAQGKINAMLAWWPIHLLAFICAVLLFRF 363

Query: 356 KKYT 359
           + Y+
Sbjct: 364 RHYS 367


>gi|260363481|ref|ZP_05776317.1| conserved inner membrane protein [Vibrio parahaemolyticus K5030]
 gi|308112551|gb|EFO50091.1| conserved inner membrane protein [Vibrio parahaemolyticus K5030]
          Length = 348

 Score = 93.1 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 112/339 (33%), Gaps = 19/339 (5%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTS 79
              +  +    + +  +   S       ++  I G  +P +  ++ P    +        
Sbjct: 1   FFVLFLVFVSQKFISVLADASDGDIPAGLIFSIVGLNMPAMGLLMLPLSLYIGILITFGR 60

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           +   +E+++++ TG     L++  L+LA++ S     +   + P  +  ++ L  +    
Sbjct: 61  LYAESEIVVMNATGIGNKFLVQAALYLALITSGVAAFNALWLSPWSQDRVEHLYEQVAAE 120

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHK-----IYYAQSGSI 194
            +   L++  F    D   +       ++TL  +F+   R   +           +   +
Sbjct: 121 NSVDLLKKGQFQGTPDGSSVVFIDDIKDSTLSNVFVAQMRPRDSVLPSVMFSSSGEVKEL 180

Query: 195 DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPN 254
              RQ I + +G  +   P   +  I KF  Y                     + L+   
Sbjct: 181 SDGRQVITMQEGTRYEGVPTRVEYMITKFDEYEGVIGQREVKQKGRDWEAYPTADLI--- 237

Query: 255 PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI 314
                         ++E   R++ +   V   L++++     A+  ++ +   +  ++ I
Sbjct: 238 -------GHPDPEAQAELQWRISLF---VCIPLLTMLVIPLSAVNPRQGRFAKMGPAILI 287

Query: 315 SFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLL 352
               F   S     +E       I ++     +  + ++
Sbjct: 288 YLAYFLAISATKSALEDGAIPAAIGMWPINAMLLIVAIM 326


>gi|297171529|gb|ADI22527.1| predicted permeases [uncultured Oceanospirillales bacterium
           HF0500_09M11]
          Length = 354

 Score = 93.1 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/360 (11%), Positives = 125/360 (34%), Gaps = 28/360 (7%)

Query: 14  RSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMET 73
            + ++    +V +    + ++ +   ++   + + L  +  + +P  L M+ P    +  
Sbjct: 1   MTTVLVTFILVMVLVSGRFIKYLAEAAAGQIAADALFLVMAFRLPEFLQMILPLSLYIAI 60

Query: 74  TNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS 133
             VL  M+ + E++++   G     +++ ++  A++    + +    + P+  + + ++ 
Sbjct: 61  LLVLGRMHMDNEMVVLRAGGQGDGRVVRSLIVPALVAMSVIALFALYVTPQGDAEVNRIF 120

Query: 134 AKAQLALTFSYLEENLFFRLDDDLYIKI--------SKYNPNNTLQGIFIVDSRDTQTHK 185
            + +       L    F    DD   +          +    +         S +     
Sbjct: 121 EEQKGRSVLELLTPGRFHVKGDDDNQRATYAESLNREEGVLESVFVADASFSSEEAGRLL 180

Query: 186 IYYAQSGSIDLDRQAIILN--DGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
             +A+SG++        L   DG  ++  P   D   + F+   ++  S  SS+   +  
Sbjct: 181 TVWARSGNLVQQDGISYLELTDGYQYQGKPGEADYREVAFEKARVRIGSERSSSRPPEVR 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
            ++   L++          +      +E   R +  L   I  L    A     +  ++ 
Sbjct: 241 GRSTLDLID----------DGGNQAMAELAWRWSLVLTVPIMCL---AAVPLSRVNPRQG 287

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQN-----PYYIPILYLFLFCISSIFLLMIKKKY 358
           +   +  ++            +   I +      P+Y  ++++ L    ++F+L    + 
Sbjct: 288 RFLRMIPAVLGYMLYVGLLLTMRSWIAEVPGSERPWYYSMVWIHLIAGFAVFMLYFGGRL 347


>gi|124514758|gb|EAY56270.1| putative permease, YjgP/YjgQ family [Leptospirillum rubarum]
          Length = 378

 Score = 92.8 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 124/360 (34%), Gaps = 7/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+   +   F++  L +V +    Q L  +NL+ +   S+  +L++   + P  
Sbjct: 1   MKIIHRYLFVELLPPFVIGLLVLVVLILTQQTLMIMNLLVNKGLSIPTVLRLVMMIFPQF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P      +T     +  + E+  +  +G     L+ P++  A L  +  F     
Sbjct: 61  LTMIIPVSVLAASTATFNRLASDGEITALKASGIGLSRLLWPLVLFAFLGYVGSFYMSLK 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            E     +++++ +          +   +F    D   I + +    + +QG+FI     
Sbjct: 121 AEETQGMSLQEMISTVLKKKMSLGIRPQVFNNFMDRFVIYVDRMPTFSRMQGVFIYQEGK 180

Query: 181 TQTH-KIYYAQSGSIDLDRQAIILNDGEVHRKS--PISKDISIMKFKSYTLQTESANSST 237
            ++   +  A+ GS+  +         ++   +          ++F SY L     ++ T
Sbjct: 181 GKSPSTVIMAREGSLLNEENGRPGIRIQLRSGTLLQGGAAQQFVRFSSYDLTIFGKSAGT 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                    +  L N    +P     LL       +K  T     +IF  + I       
Sbjct: 241 TAKPP---TIRELENKIAGSPKPDVSLLRELEDR-YKNYTYPFSCLIFAFLGIPFGIYAK 296

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              +         S+   + +      ++ +    P+   ++          FLL++  K
Sbjct: 297 RSGKLAGFVFATASVIFFYILNTVDDLLVARRLLKPFVASLIPDLALGTVMGFLLIMVFK 356


>gi|241765202|ref|ZP_04763186.1| permease YjgP/YjgQ family protein [Acidovorax delafieldii 2AN]
 gi|241365131|gb|EER60003.1| permease YjgP/YjgQ family protein [Acidovorax delafieldii 2AN]
          Length = 368

 Score = 92.8 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/368 (12%), Positives = 118/368 (32%), Gaps = 12/368 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS---STESLNILLKISGYLI 57
           MK    +I R    +     L  + + +   ++  +  V S   +   L+  L      I
Sbjct: 1   MKVLRRFIHREAFFAVGFVTLGFLALFFFFDLIDELRWVGSTGQNGYQLSHALLFVSLSI 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P+ L  + P    + T  V+  + +++E  I+  +G      ++ +L L     +  F  
Sbjct: 61  PSHLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGMGPWRALRTLLTLGGFFVLLTFAI 120

Query: 118 ENIIEPKCRS--TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
            + + P       + ++    +L    +        +         +  +    +     
Sbjct: 121 GDYVAPLTERAAQLIKVRHLGRLTSGATGAWLKERQQDHSFAVNVRALSSDGGMVDVRIF 180

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                 +     +A +G         +            S++  +    +   Q  +  S
Sbjct: 181 EFDEKGRLASQIHAATGQFGSAGTWDLQQVQRNSFVQKSSEEARVESISAPVWQWPTRIS 240

Query: 236 STIVLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           + +V       D+  +  L     +     +  + Y  EF +++   L  ++  ++++  
Sbjct: 241 ADMVAASLLKPDRMATVDLFQYIRHLEANGQSAQRYEIEFWRKVFYPLSCLVMVVLALPF 300

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYY---IPILYLFLFCISS 348
           A                +   ISF +    F Y  +    +P+     P L   +  +++
Sbjct: 301 AYLHFRAGGIAGYVFGGVMAGISFFLLNNVFGYAGNLQNWSPWLTAAAPGLIYSVLSLAA 360

Query: 349 IFLLMIKK 356
              L++++
Sbjct: 361 FGWLVLRR 368


>gi|206890381|ref|YP_002249742.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742319|gb|ACI21376.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 351

 Score = 92.8 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 125/357 (35%), Gaps = 6/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK     + R + ++  +S  F+  +  + ++ +   + +S    L  L+ +   L P +
Sbjct: 1   MKVIYKALTRELLQNIGLSIAFLNAVLIIEKLFKLSKIFASVGIDLPNLVLLILLLQPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +           + E+ I   +G       KP +++ ++   F  +    
Sbjct: 61  LIFTIPMALLLSILLTYGRTQADNEMTIFMVSGMPYKKTFKPAIYIGLIAFFFTVLMSFY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S +++             LEE +F +   D+ I + +   +  L+ + I D R 
Sbjct: 121 LAPTGVSLVREKILTILAERAPLGLEEGVFNQGFKDVTIFVKEKPDSLHLKEVVIFDERK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             T  +  A+ G I  +R  I L+             ++ + FK Y  +    N   I  
Sbjct: 181 NDTKIVI-AKGGLIKKERDNINLSLLNGKAYFNKGLTLNEVSFKEYIFRLS-PNIDPIAK 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K ++ +L  L++               Y+ E +KR    L  ++   ++           
Sbjct: 239 KVSELSLFELVSKIQTEEVKAI----DYKLELYKRFALPLLCIVSVFLAPSLCLIVGKTG 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +   I       +  + +    + +    + +     +L + +  I +  +    +K
Sbjct: 295 RIGGITVGLAIFAFYYILMIYGANLAKAGKVSAEIGSLLPVIVMAILAFTMYTRIRK 351


>gi|332187143|ref|ZP_08388883.1| hypothetical protein SUS17_2304 [Sphingomonas sp. S17]
 gi|332012843|gb|EGI54908.1| hypothetical protein SUS17_2304 [Sphingomonas sp. S17]
          Length = 366

 Score = 92.8 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 119/354 (33%), Gaps = 11/354 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRIN-LVSSSTESLNILLKISGYLIPTV 60
           ++  +Y+ +            +V +   + IL     ++++       + +      P +
Sbjct: 10  RTIAIYMAKMFLLRTFAILFALVIVLQALDILSESGAILATPGNGEAQVWRYVSLRAPQI 69

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + PF   + T     +MN+N+E++ +   G S   ++ P+L  +  +++  F   + 
Sbjct: 70  IAFILPFSVLLGTILTFFTMNQNSEVIALKAAGLSAHQVLAPLLVASAGVAVLSFAFNDR 129

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVD 177
           I P+  +T+          +     + +  +  D D       +     N  L G+ + D
Sbjct: 130 IVPRATATLSAWQKVDYGPIPIDSGDRSNVWVRDGDDLISVDLVQGRGANTQLGGVTLYD 189

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +   + +          +     I   G   R    S  ++ +              + 
Sbjct: 190 RKGGGSLQAIVRAPRGRRMGDGWQI---GPATRFEVASGKLTSIPSMIIGRGVTPEQLTL 246

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             + A+  +   L N   ++        +T       +L+  +  ++  L+  VAA   A
Sbjct: 247 ASVNADGLSFKGLSNA-IDDLREAGRPTKTLEGSLWHKLSAPMSAILMPLLGAVAAFGIA 305

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              +      I ++L  +F V   FS     +     Y P L  +   +    +
Sbjct: 306 RSGKLFVRAVIGMALGFAFFVADNFSMA---MGDLGAYPPFLAAWAPILLFFLI 356


>gi|71891829|ref|YP_277558.1| putative transmembrane protein, transport [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71795935|gb|AAZ40686.1| putative transmembrane protein, transport [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 357

 Score = 92.8 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 124/352 (35%), Gaps = 1/352 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                YI++ +  S     L ++ ++ VI+++  +  +     S   ++      +P   
Sbjct: 3   NILNYYIVKTVISSTTTVFLVLLSLSSVIKLIDELRKIGEGNHSFFDVIIYMILSLPKDF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +  + E + +  +G SR+ +   V+  ++ + +   IS   I
Sbjct: 63  ELFFPIATLLGGLLGLCMLEVHNEFIAMQISGFSRLQITLSVIKASVPVLLCSIISNEWI 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P     +     ++Q   +   ++    + +D + ++ +      N L G+ + +  + 
Sbjct: 123 VPNSEKIMCMYRNQSQHDASLLSIKIKNLWFIDKNDFVCVENVIAYNELLGVKLYNFNEE 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +  K       ++ +D+   ++N  E+      S     +    +  +      S ++  
Sbjct: 183 RKLKKICYIERAVFVDKVWHLINVNELDISQKTSVVNKNIPHSKWNAELTPYRLSMMITH 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            N  ++S L +      N   +  + Y+  F K++   +   +  ++++         ++
Sbjct: 243 PNFLSISKLYHC-AKYFNRIGQNSKYYQVIFWKKILSPISGSVMTIMALAFTFGPLYKKK 301

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                 +       F +      I+  I      I  +   +  +    ++M
Sbjct: 302 IGIRLFVGSIAGFLFYILNQIFGILSAIHSVSPIIGSISPSIIFLVISVIIM 353


>gi|78356991|ref|YP_388440.1| permease [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78219396|gb|ABB38745.1| permease, putative [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 397

 Score = 92.8 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 53/367 (14%), Positives = 127/367 (34%), Gaps = 17/367 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              +  + + +   F +    ++ +  + ++LQ   L      +   +  +  YL P  L
Sbjct: 11  TLLQKQLFKELVSLFGLCLGSLLSLILIGRMLQLRELFLGLDLNALDMATLFVYLSPLFL 70

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P    +        M+ + EL+ +   G S   L+   L   +L  +         
Sbjct: 71  TLIIPIACMLSVFLAFLRMSTDRELVALKAGGLSLFQLLPAPLLFCLLCGLLNLYISLSG 130

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSRD 180
                   +    +         L+  +F +    L +     + ++  L  + + D+  
Sbjct: 131 VAWGMGNFRHTIMEIANTRAKIVLQPGVFNQTVPGLTVFARTVDNSSGKLGHVLVEDNSR 190

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTES--AN 234
            +T  +  A  G +  D Q      IL++G+++R+   S  +      +  L        
Sbjct: 191 DETSILILAPRGQLRSDEQRGELVFILHNGKIYRQQEDSVSVLDFNDYTVRLDLGQIFKG 250

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPEL--LETYRSEFHKRLTQWLFPVIFGLISIVA 292
            S   +K  + + S L +  P++P  R +   L     E  KR    +  ++ GL ++  
Sbjct: 251 VSLGKVKPKELSWSELRSIGPDHPEARRDSNFLRKVHVELQKRWVLPMACLVLGLFAMPL 310

Query: 293 ADKRALVRQRKKIHPIFISLSIS-FGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSI 349
           A        +       I L++  F +++    +     ++    P   L++      ++
Sbjct: 311 ACA-----FQGLDKQFGILLALGMFLIYYTMLSVGLSTGESGTVPPAVGLWMPNLIFLAV 365

Query: 350 FLLMIKK 356
            L  + +
Sbjct: 366 GLFWLDR 372


>gi|313200017|ref|YP_004038675.1| permease [Methylovorus sp. MP688]
 gi|312439333|gb|ADQ83439.1| permease YjgP/YjgQ family protein [Methylovorus sp. MP688]
          Length = 355

 Score = 92.8 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/352 (11%), Positives = 112/352 (31%), Gaps = 15/352 (4%)

Query: 13  GRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAME 72
             + + + L +  I    ++   I + +  + + + +  + G+ +   LPM+      + 
Sbjct: 1   MGTAIGAFLVLFGIVIAQRVAYYIGVAAKGSLASDAINTLLGFSMLKFLPMILSLTIFLA 60

Query: 73  TTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQL 132
               LT  +R++E+++  ++G      I+PVL  AI +   + +    + P   +   + 
Sbjct: 61  VLLTLTRWHRDSEMVVWFSSGMGLAGWIRPVLTFAIPVVAVIAVLSLFVTPWATNKGSEF 120

Query: 133 SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYA--- 189
             + +     + +   +F    +   +   +           I                 
Sbjct: 121 RDQLKSRDELASISPGVFKESRNADRVFFVESFDELGNVVKNIFVQSVQHQRLGVVVASQ 180

Query: 190 -QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS 248
                 D     +++  G  +   P + + S  +F+ Y+++ E                 
Sbjct: 181 GHRTVADNGDNFLVMEHGRRYEGKPNTAEFSTTEFERYSIRIEPNEVKEEPPGTAALGSV 240

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPI 308
            LL                  +E   RL   +   +  L++I  +       +   +   
Sbjct: 241 ELL----------KNHNPANNAELQWRLAIPISAFLLVLLAIPLSFVDNRSGRSANMMLA 290

Query: 309 FISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
            +   I   +       + + + NP  + +  + +F +     +  ++   +
Sbjct: 291 LLIYIIYNNMLSIVQAWLTQGKLNPV-VGLWPVHVFFLLLTIWMFYRRLLQR 341


>gi|321222550|gb|EFX47622.1| putative Permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 336

 Score = 92.8 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/336 (12%), Positives = 104/336 (30%), Gaps = 2/336 (0%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
            +V ++ +I+ + ++                +   +P  + +  P    +     L  + 
Sbjct: 1   MLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVPKDIQIFFPMAALLGALLGLGMLA 60

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
           + +EL+++  +G +R+ +   V+  AI L +        + P+     +   A+A    +
Sbjct: 61  QRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGS 120

Query: 142 FSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAI 201
               ++ L+ +  ++                     +   +   + YA S   D + +  
Sbjct: 121 LLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYAFNDQRRLQSVRYAASAKFDPEHKVW 180

Query: 202 ILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNY 260
            L+  +     +P     S     ++           + L  +  ++S L N        
Sbjct: 181 RLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHN-YVKYLKS 239

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
             +    Y+     ++ Q L   +  L+++                   IS    F V  
Sbjct: 240 SGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLD 299

Query: 321 GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                +  +   P  +  L            LM++K
Sbjct: 300 QIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 335


>gi|115525295|ref|YP_782206.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisA53]
 gi|115519242|gb|ABJ07226.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
           BisA53]
          Length = 361

 Score = 92.8 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/356 (11%), Positives = 98/356 (27%), Gaps = 10/356 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            +   Y       + +   L +  +   +  +  +           ++ + S + +P +L
Sbjct: 4   NTLGRYFAGKFVTAAVGVFLGLFVLLVFVDYIDLLRRSGGRAIPALLIAQTSMFRVPQLL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PFC  +       +++R  EL++    G S    + P L+ A+LL  F  +  N +
Sbjct: 64  ERLMPFCILIGAMTCYLALSRRLELVVARAAGVSAWQFMAPALWSALLLGTFATMVFNPV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL----YIKISKYNPNNTLQGIFIVD 177
               +   KQ  A      + S  + + F+    +      I  S       L     V 
Sbjct: 124 SANLQERAKQNEASMFGDSSGSLQDASGFWINQVNSEGQAIINASHSQQQGVLLTGLTVF 183

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
              T        ++    L+     L     +       +   +           A    
Sbjct: 184 RFATDFSFKDRLEAREATLEPGFWRLKSVRRYSLDAPPVEEDTLL---LPTTLTQAQVRN 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   +   L +    +          YR ++HK L +        +++   +    
Sbjct: 241 SFSTPETVSFWQLPS-YIRSSESSGFATAGYRLQYHKLLARPFLLAAMVMLAASVSL--R 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             R       +   +   F ++          +    +          +  +   M
Sbjct: 298 FFRFGGVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVFVGGLAGFM 353


>gi|186476977|ref|YP_001858447.1| permease YjgP/YjgQ family protein [Burkholderia phymatum STM815]
 gi|184193436|gb|ACC71401.1| permease YjgP/YjgQ family protein [Burkholderia phymatum STM815]
          Length = 370

 Score = 92.8 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 117/362 (32%), Gaps = 16/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ +     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++   +G S    I+P+   A  + I +     +  
Sbjct: 62  IMLVATLFVSILFVLTRWYKDSEMVVWLASGVSLARFIRPIGVFATPIIILIAFFVFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F        +   +    +      +  +    
Sbjct: 122 PWSNQQSKLIRARFQQRDEVSLLAPGQFRESAASHRVFFIEKMSPDQGHVENVFVTSTEN 181

Query: 183 THKIYYA----QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + +     + ++L +G  +   P   D  IM+F+ Y ++ +S    + 
Sbjct: 182 GKVNVVVSKNGHTETHKNGDRFVVLENGRRYDGEPGHPDFRIMEFERYGVKIQSQPVVST 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRA 297
                   L    +P   N            +EF  R    L  +   L++I  A     
Sbjct: 242 PTTTGTPTLDLFRDPTRQNL-----------AEFAWRAGLPLIAINLMLLAIPLAHQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    S+I          +  L++ +  I      +  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQSWIEQGKMSFGVGLVGLHILVALIVVFIFWLRVRN 350

Query: 358 YT 359
             
Sbjct: 351 RP 352


>gi|302338545|ref|YP_003803751.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301635730|gb|ADK81157.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 381

 Score = 92.8 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 131/375 (34%), Gaps = 20/375 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + Y+L+    SF ++ +F  FI +V Q+L     V S    +  +L +  Y +P +L
Sbjct: 11  RIADAYLLKEFFFSFCIAFIFFFFIFFVNQLLLLAEEVLSKRVGVTKVLLLILYSLPAIL 70

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF   + T   +   + + E+      G S + L  PV+ L ++LS   F S +++
Sbjct: 71  AFTFPFSALLGTVMAIGRFSSDNEITAFRALGVSHLRLFFPVMLLGLILSGISFFSNDVL 130

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+      +L      +     LE     R  D   + ++    +  +  + I+D  + 
Sbjct: 131 LPRGTVQFGRLYRDILYSNPALELEPYAVRRYKD--TVLVTGAISDREISDLVILDHDED 188

Query: 182 QTHKIYYAQSGSIDLDRQ-------AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           Q  ++  A+   ++ D +        +    G   +K     D        Y +   S  
Sbjct: 189 QNERMLSAKRAYLEQDEKENGVISLRLEEVFGHTAKKREGDFDYFTADTMEYNILLSSFT 248

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLET---------YRSEFHKRLTQWLFPVIF 285
            S   L   + + + L          + E             Y+ EF+K+L   L    F
Sbjct: 249 YSINNLTPREMSTAALYGEIQTMEAKKKEDQNKKRFDRTLQLYKIEFYKKLAIPLGCFTF 308

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
              +  A        +         + +  + +      +  + + +      ++     
Sbjct: 309 MFFAFPAGLLPKRSGRWVGFVLGLFAAAFYWMLLIVGQTLGVRFQVSAALA--MWFPNIF 366

Query: 346 ISSIFLLMIKKKYTK 360
           I+ I LL+   +  +
Sbjct: 367 IAFIGLLIYLSRSHR 381


>gi|15602061|ref|NP_245133.1| hypothetical protein PM0196 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720419|gb|AAK02280.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 368

 Score = 92.8 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 116/314 (36%), Gaps = 18/314 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + +S L     ++ I +  Q+++ +   +S     ++++ + G  +PT+  
Sbjct: 2   ILTRYLTKEVLKSQLAILFILLLIFFCQQLVRVLGSAASGKVPADLVMSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L++ VL L++  +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQKILVRVVLILSLFTASIAAYNVFWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+   T   L    F   +++ ++       +NT+  +++  +R+  
Sbjct: 122 PWAIQKQSEILEGAKANPTMGALASGQFINTNNNEFVLFIDSIKDNTIHDVYVFQTRERG 181

Query: 183 T--HKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +       Q + L + +    S    D  I  F+ Y       + + 
Sbjct: 182 NLKPSVLVAEKGELQALPNGDQILKLENSQRVEGSSAFPDFRITHFEEYQAYLGYQDKNN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +  +     L+                 ++E + RL+  L   +  LI++       
Sbjct: 242 DEQETEELGFWDLM----------KTHTPAAKAELNWRLSLILAVPLMALIAVPL---SR 288

Query: 298 LVRQRKKIHPIFIS 311
           +  ++ +   +  +
Sbjct: 289 VNPRQGRFAKVLPA 302


>gi|332829399|gb|EGK02053.1| hypothetical protein HMPREF9455_00175 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 365

 Score = 92.8 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 118/357 (33%), Gaps = 11/357 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +   + YI++    +++ S + I+ IA V  I ++++        L  I+       +P 
Sbjct: 4   LSILDRYIIKKFLGTYIFSIILIISIAVVFDINEKLDKFLDKKAPLTAIIFDYYVNFVPY 63

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +     +      + +  N+E++ + + G S   L+KP +  A ++++F F+  +
Sbjct: 64  YTNLFSALFVFIAVIFFTSKLADNSEIIAMLSNGMSFKRLMKPYMISAGIIAVFSFVLSS 123

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I P    T  +   K  +          +  ++D  + + I +++          +D  
Sbjct: 124 FIIPPANVTRIKFQNK-YVRDKSVEYASGIQLQVDKGVILYIERFDNKTKEGYNLSLDKI 182

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +  K                 L + ++     + + IS       TL    ++    V
Sbjct: 183 EDKELKSRLTAQRIKYDSAYHWELYNYKIRELQGMREVISNGDKIDTTLNVVPSDFLISV 242

Query: 240 LKANDQNLSFLLNPNPNNPNY-----RPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                     L        +          +  +  EFHKR        I  +I      
Sbjct: 243 NDFEQMTTPVLYKYIQRQRDKGIATVGDVSITQFEIEFHKRFASVFSAFILTIIGASL-- 300

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             A   +      I I L +S   +  F  +      +      L +++  +  + +
Sbjct: 301 -SARKVKGGMGLNIGIGLGLSVS-YIMFQTVSSSFAVSGTMPAWLAVWIPNLVFMAI 355


>gi|330994316|ref|ZP_08318244.1| putative permease [Gluconacetobacter sp. SXCC-1]
 gi|329758783|gb|EGG75299.1| putative permease [Gluconacetobacter sp. SXCC-1]
          Length = 410

 Score = 92.8 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 57/367 (15%), Positives = 126/367 (34%), Gaps = 7/367 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + Y+LR +   F ++   ++    + ++L   NL++++  S+     +   LIP  L
Sbjct: 17  TTMDRYLLRQVVPPFSIALGVVMAALLLERLLVLFNLLAANGSSMKTFFALLSDLIPHYL 76

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +   +V+  M+ N E+  +  +G S   + +P +    +     F     I
Sbjct: 77  GLALPAAMCVSVFSVIRRMSANHEIDALMASGVSIFRICQPFVLTGAIFGFLAFSLYGFI 136

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           +P  R   +     A  A    +L+  +F   DD +    +  +  + +  +FI D  D 
Sbjct: 137 QPYARYDYRSAFYFASHAGWTPHLQSKMFALSDDIVLTAENVDHAGSRMWNVFIRDGTDK 196

Query: 182 QTHKIYYAQSGSIDL----DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
              +   AQ G +          + L DG V   S           ++  + +      T
Sbjct: 197 AHVRFISAQKGYLFNPADGSNIRLDLVDGTVITDSQDKPPTITSFSRTTRMISTKGKLDT 256

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              +   +    L  P                   +E + RL +        +++   A 
Sbjct: 257 EAYRKRGETERELTVPELYYGIRYGNPTISHSYMIAELNFRLARTAAIPFIPILACALAG 316

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            R   +    +    I+L             +  +  +P  +  L   +F +  + +L+ 
Sbjct: 317 VRKRQKNNPGLAIAAITLVGFDHTLQMGMSFVANMHMSPLLVIWLPTLVFSLICVGVLIR 376

Query: 355 KKKYTKI 361
           +    +I
Sbjct: 377 QAGGLRI 383


>gi|254446939|ref|ZP_05060406.1| permease YjgP/YjgQ [gamma proteobacterium HTCC5015]
 gi|198263078|gb|EDY87356.1| permease YjgP/YjgQ [gamma proteobacterium HTCC5015]
          Length = 347

 Score = 92.8 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 111/351 (31%), Gaps = 8/351 (2%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVLPMVTP 66
           + R I  +  +  L I+F+      L     V+     S    +      +P       P
Sbjct: 1   MARAILAATALVLLVILFLDAFFGFLGEGKYVARYADYSYWHAIGYVMLRVPGKAMEFMP 60

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +     L ++  N+EL  +   G S+  ++   +   +++++ + +    + P+  
Sbjct: 61  AITLIGALLGLGTLASNSELTAMRAAGLSKGRIVWGGMKTGLIIALAVALLGEYVAPQSD 120

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
                  A+AQ     S L +      D+ +YIK ++ +       IF    +  +    
Sbjct: 121 LKAAAFRAQAQGRAITSELRDFWLKNGDEFVYIKRAEPDKRLRGVRIF----QVQEGELK 176

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
              ++ S         LN    +R    +    ++   + +   +        L   +  
Sbjct: 177 RLLKAASAQHTASGWRLNQVREYRFEDDAVSRKVIGQMTKSQLVDVDLFEVAQLSPENMR 236

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
           L  L N      +        YR  F K++T  L  ++  L+++         R      
Sbjct: 237 LLELDN-YIAYLDDNRLEATLYRKAFWKKVTAPLSILVMLLLAMPFIFANR--RSGNAGA 293

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            + I +      +   S I +  +     + +         +     + K+
Sbjct: 294 RLVIGILFGMSYYIISSLIENLGQVYGVPVLLGAFTPIVAFTALGFWLLKR 344


>gi|209964865|ref|YP_002297780.1| predicted permease YjgP [Rhodospirillum centenum SW]
 gi|209958331|gb|ACI98967.1| predicted permease YjgP [Rhodospirillum centenum SW]
          Length = 364

 Score = 92.4 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 103/355 (29%), Gaps = 13/355 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +  LYI R     FL     ++ I +++  ++ +   ++    +  I+L +    +P + 
Sbjct: 6   TLSLYIGRQFVLWFLAILGGMLAIVYLLDTVELLRRAANKPDAAFQIVLTMGLLKLPEIG 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL-----FI 116
             + PF            + R  EL+++  +G S    + PVL    L+ + L      I
Sbjct: 66  QEIVPFVVLFGGMYTFWRLTRTQELVVVRASGISVWQFMAPVLTATFLIGMTLVGVLNPI 125

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
              ++    +   + L                          I      P        +V
Sbjct: 126 FSAMLGRYEQLENRYLRGMKSSLDVAESGIWLRQVGEPQAYLIHADAIVPGTLELRQVMV 185

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              ++         + S  L      L D      +   +    +       +       
Sbjct: 186 LLNESDGQVSGRFDAASATLRDGFWELRDA---WFNRPGRVGEFLPAYRLPTELTEQKIQ 242

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                 +  +   L                 +R  +H  L Q +      L++   A   
Sbjct: 243 EAFASPDTLSFWEL-PGFIATLEATGLSSVRHRLHWHSLLAQPVLLCAMILLAAAFAM-- 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             VR+   +  I + ++ +  +F     I+  +  +     +L  +     S+ L
Sbjct: 300 RQVRRGGALTLIALGIAAALLLF-VMQDIVLALGMSGTIPVLLAAWAPAGVSVML 353


>gi|325282730|ref|YP_004255271.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
 gi|324314539|gb|ADY25654.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
          Length = 387

 Score = 92.4 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 46/368 (12%), Positives = 125/368 (33%), Gaps = 12/368 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ FE Y+L  I    + +   ++ +  +  +   +  + +   S  ++ ++    +P  
Sbjct: 23  MRRFETYVLSEILPLLVAALSALIVLLMLKGLEDVLAPLLAKGASPALVAQLLALNVPEA 82

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P          L+ ++ ++E+    + G    TL +PVL LA L+++  F    +
Sbjct: 83  MAFGLPLALMFAALLGLSRLSGDSEIKAALSGGIPGTTLFRPVLLLAALVTLLSFGINEV 142

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENL-----FFRLDDDLYIKISKYNPNNTLQGIFI 175
           +  + +   + +  +  L                  R   D  I +     + TL+ + I
Sbjct: 143 LVTRAKVQAQSVQRQIVLDNPRVIGLAQTAGGGLVLRDALDRAISVGSVGEDGTLRNLRI 202

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           V  +     +        +  +   ++   G        ++ ++++ F++  L  +   +
Sbjct: 203 VTMQPGLPPREVITAREGVLQEGSNVLELRGGQRVSYQGARPVTVLNFETGQLPVQDVQA 262

Query: 236 ST---IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           S      L      L  L        +        + +  +++  Q L  +     ++  
Sbjct: 263 SFDGGSGLDPFYLPLGTLKERTDGYRDSGIRSPGDFTA-LYRKFAQPLSALALAFFAVSL 321

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           A       +      +  +L +SF  +  +S      E      P+       I+ +   
Sbjct: 322 AL---YTFRSGLNLGLVWALLLSFAYYATWSVFRVMGENGALPAPVAAFGPDVIALLAGA 378

Query: 353 MIKKKYTK 360
           ++  + ++
Sbjct: 379 LLLWRASR 386


>gi|317493503|ref|ZP_07951924.1| YjgP/YjgQ permease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918446|gb|EFV39784.1| YjgP/YjgQ permease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 356

 Score = 92.4 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 70/364 (19%), Positives = 143/364 (39%), Gaps = 16/364 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+  I R  ++   F++FI       + +   ++ T +L ++L I  Y +   
Sbjct: 1   MKLIEHYIMAEIRRLVVIIVGFLIFIFASYSAQRYLTEAANGTLALEVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  +  ++E+  I   G S I L K V+ LAI LSI + +    
Sbjct: 61  LEMLLPVGLYVSVGVALGQLYTDSEITAISAIGASPIRLYKAVMLLAIPLSILVTLMSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L  S+L   +F   D    I   + NP++      ++ +  
Sbjct: 121 ARPWAYAQIYQLEQQSQSELDVSHLRAKMFNINDSGRMILSEEINPDSNHLTDVLIYTSS 180

Query: 181 TQTHKIYYAQSGSIDLDRQAI---ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +Y A++  +          IL+ G  +       D S   +++ TL  +  N S 
Sbjct: 181 GNKTSVYRAKTVDVTNPSPITPSVILHSGTGYTLRHQGTDDSERVYRNLTLDLKPLNLSV 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +     ++ + + +P +            +E   R ++ +   +  L++I     R 
Sbjct: 241 DAKRKAKSVIALIRSADPAD-----------YAEVQWRESRGVNAFLMALLAIS--LSRV 287

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             RQ +    + +++  +   + G               P ++L    +    L++I + 
Sbjct: 288 KPRQGRFSTLLPLTILFTVIFYGGNVCRSLVASGYLSVTPGVWLVPMLMFIGVLVLIARD 347

Query: 358 YTKI 361
           ++ +
Sbjct: 348 FSLL 351


>gi|207721412|ref|YP_002251853.1| permease protein [Ralstonia solanacearum MolK2]
 gi|206586571|emb|CAQ17158.1| permease protein [Ralstonia solanacearum MolK2]
          Length = 401

 Score = 92.4 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/395 (11%), Positives = 114/395 (28%), Gaps = 41/395 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +E Y  R I   F+     ++ +     +L  +  V     +L           PT 
Sbjct: 7   MPVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSVVGRYTTLIAFFH-VMLQAPTR 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + M   +E  I    G      +  +  +A+ L++  ++    
Sbjct: 66  VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRGALLSLFKIALPLALVTYVFGEF 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----------LYIKISKYNPNNT 169
           I PK     +++  +A  A   +     ++ +                ++ +    P+ T
Sbjct: 126 IGPKSEQFAQKVRLEALGATVSAEFRSGVWVKDRGPARPDGSGGEVTRFVNVGSLQPDQT 185

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS----------------- 212
           ++ + I +               +     Q+  L+D                        
Sbjct: 186 IRSLRIYEFDADYRLSSIRVAQQARYQGHQSWELDDVTQTHFIEFPRKAGAAAPQDNRQA 245

Query: 213 -PISKDISIMKFKSYTLQTESANSS--------TIVLKANDQNLSFLLNPNPNNPNYRPE 263
            P + D     F+    +               ++++   ++  +  L     +     +
Sbjct: 246 VPGAPDALAPDFRGEQTKLPKQEMRSELTPQILSVLMVTPERMATLDLFQYIRHLRDNKQ 305

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
             + Y     K++      ++   +++  A      R       +F  + +        +
Sbjct: 306 DTQRYEIALWKKVVYPFTVLVMMALALPFAYL--HARAGAVGLKVFGGIMLGLSFQLVNN 363

Query: 324 YIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
              H    N  +  I    +     + + +I  ++
Sbjct: 364 LFSHVGLLN-TWPAIFTAIVPGALYLAVALIALRW 397


>gi|83746688|ref|ZP_00943737.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
           UW551]
 gi|207742607|ref|YP_002258999.1| permease protein [Ralstonia solanacearum IPO1609]
 gi|83726641|gb|EAP73770.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
           UW551]
 gi|206594001|emb|CAQ60928.1| permease protein [Ralstonia solanacearum IPO1609]
          Length = 401

 Score = 92.4 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/395 (11%), Positives = 114/395 (28%), Gaps = 41/395 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +E Y  R I   F+     ++ +     +L  +  V     +L           PT 
Sbjct: 7   MPVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSVVGRYTTLIAFFH-VMLQAPTR 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + M   +E  I    G      +  +  +A+ L++  ++    
Sbjct: 66  VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRGALLSLFKIALPLALVTYVFGEF 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----------LYIKISKYNPNNT 169
           I PK     +++  +A  A   +     ++ +                ++ +    P+ T
Sbjct: 126 IGPKSEQFAQKVRLEALGATVSAEFRSGVWVKDRGPARPDGSGGEVTRFVNVGSLQPDQT 185

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS----------------- 212
           ++ + I +               +     Q+  L+D                        
Sbjct: 186 IRSLRIYEFDADYRLSSIRVAQQARYQGHQSWELDDVTETHFIEFPRKAGAAAPQDNRQA 245

Query: 213 -PISKDISIMKFKSYTLQTESANSS--------TIVLKANDQNLSFLLNPNPNNPNYRPE 263
            P + D     F+    +               ++++   ++  +  L     +     +
Sbjct: 246 VPGAPDALAPDFRGEQTKLPKQEMRSELTPQILSVLMVTPERMATLDLFQYIRHLRDNKQ 305

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
             + Y     K++      ++   +++  A      R       +F  + +        +
Sbjct: 306 DTQRYEIALWKKVVYPFTVLVMMALALPFAYL--HARAGAVGLKVFGGIMLGLSFQLVNN 363

Query: 324 YIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
              H    N  +  I    +     + + +I  ++
Sbjct: 364 LFSHVGLLN-TWPAIFTAIVPGALYLAVALIALRW 397


>gi|305664654|ref|YP_003860941.1| hypothetical protein FB2170_00060 [Maribacter sp. HTCC2170]
 gi|88707355|gb|EAQ99601.1| hypothetical protein FB2170_00060 [Maribacter sp. HTCC2170]
          Length = 341

 Score = 92.4 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 116/344 (33%), Gaps = 8/344 (2%)

Query: 19  SCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLT 78
             L  + I  +  + ++I  +  +    N ++         +  ++ P    +      +
Sbjct: 1   MLLLFIPIGIMANLAEQIGKMIDNDAPTNEIIIYYVNFTIYIGSLLFPIFLFLSIIFFTS 60

Query: 79  SMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQL 138
            +  NTE++ I ++G S    ++P L  A ++++ + +    I P       +   K   
Sbjct: 61  KLASNTEIVAILSSGVSYNRFLRPYLIGASIVALIMLVMAMFIVPNASIGYNEFKFKYLK 120

Query: 139 ALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI--YYAQSGSIDL 196
                 +  N+F +L++  +I +  ++P       F  +  +          A S     
Sbjct: 121 KGKQDRVTSNIFNQLNESDFIYVKSFDPARQNANQFTFERFNEDNTLDFKISANSIRWIE 180

Query: 197 DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPN 256
                 L   +  +    S  I            +  + + +   A  +NL  L     N
Sbjct: 181 KDSTYRLTKYKKRKMVGDSAIIETKNRLDTLFTFKIDDLTPVSYIAETKNLFELNRFIEN 240

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
                   +  Y    ++R    L   I  +I++      ++ R+      +   + ++F
Sbjct: 241 QRRKGASNINNYVLVKYRRWALPLTAFILTIIAVAV---SSVKRRGGMGINLAFGIGVAF 297

Query: 317 GVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              +    F  +  +   +P    I+   +F + + +LL   K+
Sbjct: 298 IYIFFDKVFGTLAEQAGFSPLLAVIIPNVVFGVLAFYLLQNAKR 341


>gi|22124660|ref|NP_668083.1| hypothetical protein y0747 [Yersinia pestis KIM 10]
 gi|45440496|ref|NP_992035.1| hypothetical protein YP_0644 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51594884|ref|YP_069075.1| membrane protein, permease [Yersinia pseudotuberculosis IP 32953]
 gi|108808932|ref|YP_652848.1| hypothetical protein YPA_2941 [Yersinia pestis Antiqua]
 gi|108810813|ref|YP_646580.1| hypothetical protein YPN_0648 [Yersinia pestis Nepal516]
 gi|145600504|ref|YP_001164580.1| hypothetical protein YPDSF_3250 [Yersinia pestis Pestoides F]
 gi|153948230|ref|YP_001402496.1| permease [Yersinia pseudotuberculosis IP 31758]
 gi|153997518|ref|ZP_02022618.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|162420063|ref|YP_001608339.1| hypothetical protein YpAngola_A4048 [Yersinia pestis Angola]
 gi|165925825|ref|ZP_02221657.1| putative permease [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936618|ref|ZP_02225185.1| putative permease [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010128|ref|ZP_02231026.1| putative permease [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166214282|ref|ZP_02240317.1| putative permease [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167398727|ref|ZP_02304251.1| putative permease [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167420598|ref|ZP_02312351.1| putative permease [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423158|ref|ZP_02314911.1| putative permease [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170025893|ref|YP_001722398.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186893894|ref|YP_001871006.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|218930456|ref|YP_002348331.1| hypothetical protein YPO3440 [Yersinia pestis CO92]
 gi|229839084|ref|ZP_04459243.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229896572|ref|ZP_04511739.1| conserved inner membrane protein [Yersinia pestis Pestoides A]
 gi|229899647|ref|ZP_04514788.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901016|ref|ZP_04516140.1| conserved inner membrane protein [Yersinia pestis Nepal516]
 gi|270489196|ref|ZP_06206270.1| inner membrane family protein [Yersinia pestis KIM D27]
 gi|294505144|ref|YP_003569206.1| hypothetical protein YPZ3_3035 [Yersinia pestis Z176003]
 gi|21957469|gb|AAM84334.1|AE013676_7 hypothetical protein y0747 [Yersinia pestis KIM 10]
 gi|45435353|gb|AAS60912.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51588166|emb|CAH19772.1| putative membrane protein, permease [Yersinia pseudotuberculosis IP
           32953]
 gi|108774461|gb|ABG16980.1| membrane protein [Yersinia pestis Nepal516]
 gi|108780845|gb|ABG14903.1| putative membrane protein [Yersinia pestis Antiqua]
 gi|115349067|emb|CAL22029.1| putative membrane protein [Yersinia pestis CO92]
 gi|145212200|gb|ABP41607.1| membrane protein [Yersinia pestis Pestoides F]
 gi|149289155|gb|EDM39235.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|152959725|gb|ABS47186.1| putative permease [Yersinia pseudotuberculosis IP 31758]
 gi|162352878|gb|ABX86826.1| putative permease [Yersinia pestis Angola]
 gi|165915267|gb|EDR33877.1| putative permease [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922437|gb|EDR39614.1| putative permease [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165991035|gb|EDR43336.1| putative permease [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204514|gb|EDR48994.1| putative permease [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166961404|gb|EDR57425.1| putative permease [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051231|gb|EDR62639.1| putative permease [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057328|gb|EDR67074.1| putative permease [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752427|gb|ACA69945.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186696920|gb|ACC87549.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682355|gb|EEO78447.1| conserved inner membrane protein [Yersinia pestis Nepal516]
 gi|229687139|gb|EEO79214.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695450|gb|EEO85497.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700350|gb|EEO88382.1| conserved inner membrane protein [Yersinia pestis Pestoides A]
 gi|262367137|gb|ACY63694.1| hypothetical protein YPD8_3022 [Yersinia pestis D182038]
 gi|270337700|gb|EFA48477.1| inner membrane family protein [Yersinia pestis KIM D27]
 gi|294355603|gb|ADE65944.1| hypothetical protein YPZ3_3035 [Yersinia pestis Z176003]
          Length = 364

 Score = 92.4 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 125/361 (34%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNVVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ +++  G  + +LI   L LA+  S    I+   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMNACGMGKKSLIMAALILALFTSGLAAINTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   + + L    F   +D                 +F+   R   
Sbjct: 122 PWSSKHQDVVLNDAKANPSLAALGGGQFKSSNDGNSALFIGNVAGKEFNRVFLAQLRPNG 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +             +    Q +ILN G  +  + + +D  I  F  Y           
Sbjct: 182 NQRPSVVVADSGHMSELPDGSQMVILNKGTRYEGTALLRDFRITDFVDYQAVIGHKQVQQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A+  ++  L      +           R+EFH RLT  +  VI  L+         
Sbjct: 242 SSNGADQMSMKELWRSQEPDA----------RAEFHWRLTLIVSVVIMALL---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   S +  K   N    P+++++    + + L +I   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSKAG-NGQLDPLVWMWAVNGAYLALAIILNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|218885479|ref|YP_002434800.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756433|gb|ACL07332.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 361

 Score = 92.4 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/359 (11%), Positives = 112/359 (31%), Gaps = 8/359 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+ R      L +      +  +  +  R++    +  SL++         P +
Sbjct: 1   MSLLARYLFRNNLMLILPTLAIGTGLYILSDLFDRLDDFLEAGVSLSVAAWYFVAKTPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P  F + T + L  M+R  EL+ +   G S   + + ++   ++          +
Sbjct: 61  ISQILPAVFLLATLSQLCLMSRGRELIALQAGGISMGRIARVLVLCGLVWGGLQLGFSQV 120

Query: 121 IEPKCR-STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           +         +  S   +     +    N++F     +           T +G+   +  
Sbjct: 121 LGVSGEVEAARIWSEDVRGKTEATATLRNVWFTDGAYVVSLAEVVPAQGTGRGLAAYELS 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D     +   ++ +    ++   L+       S                  ++   +   
Sbjct: 181 DDGLSILRVVRAATFTAGQRQWELHGVTEFDPSGYLSTRHDSLTLPLRQDVQAFLITARN 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
              +   L  L +   +  +     +E  R+ +H +L      V+     + A     + 
Sbjct: 241 ADPSRLPLWQLGDA-IDRLSASGSNVEGVRTAWHMKLAYAASLVV-----MAAVAAAIVT 294

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +      I +SL I+F  +  F  +   + Q     P L  +      + + +++  +
Sbjct: 295 WRDNIYLGIGLSLIITFLFYTMF-TVGGTLGQKGIVSPPLAAWGSNALILAVALLRLAW 352


>gi|24213174|ref|NP_710655.1| permease [Leptospira interrogans serovar Lai str. 56601]
 gi|45656313|ref|YP_000399.1| hypothetical protein LIC10413 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24193889|gb|AAN47673.1| permease [Leptospira interrogans serovar Lai str. 56601]
 gi|45599547|gb|AAS69036.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 386

 Score = 92.4 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/364 (10%), Positives = 110/364 (30%), Gaps = 13/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++  + Y+     + F+ + + +  I  +  +   +   +++      +     Y IP +
Sbjct: 25  LRILDKYLFGEFFKIFIGTVILLTGIMLLSLVNDNLRNFTATKAPRYHVALFLVYSIPKI 84

Query: 61  LPM-VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +   V            +   + N EL+ +   G S   ++ P++   IL+ I + ++  
Sbjct: 85  ISTTVVSMSLMFSICFTVGQFSVNKELVSMMAAGVSFFRIVTPLILFGILMWIIMLLATE 144

Query: 120 IIEPKCRSTIKQLSAKAQLAL---TFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           +I        K         +     S  + ++  +                     +I 
Sbjct: 145 LIVRPVNKLAKIEHDTLTEGMGTLANSVYQFHVKGKEGFYYLYFYDPDKDEINGGFNYIR 204

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS- 235
              D     +  +     + + +   +   E        K  S   ++    +     S 
Sbjct: 205 LRPDGSPETVISSLKAKYNYETKLWKMKKVEEWHFDNDLKLSSQETYEEKEYELPEEPSY 264

Query: 236 -STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                    + NL  L          +        +E H      +  +I  LI  +A  
Sbjct: 265 FKVPAGSVEEMNLFQLKEEEKRR-IQKGLAYGDVLTEKHSVFALPMMTIIVTLIGTIA-- 321

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLL 352
                ++   +  + I++ +   +++ F+     + +N    P   +++       +   
Sbjct: 322 -GYFTKKTAGVASLGITIGVV-LIYYIFNSAGKSLGENGVIPPFAGVWITPSLFLGLCFW 379

Query: 353 MIKK 356
           M ++
Sbjct: 380 MFRR 383


>gi|87310838|ref|ZP_01092964.1| hypothetical protein DSM3645_18031 [Blastopirellula marina DSM
           3645]
 gi|87286353|gb|EAQ78261.1| hypothetical protein DSM3645_18031 [Blastopirellula marina DSM
           3645]
          Length = 389

 Score = 92.4 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/393 (14%), Positives = 118/393 (30%), Gaps = 39/393 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    YIL  I + F ++   +  +  ++ ++Q+             + +I  Y+IP  
Sbjct: 1   MRIITRYILWEILKIFFLALGALTLLIVLVGVVQQ---ALREGLGPGPIARIIPYMIPDA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P      + +V   +    EL  +   G S +  + P   +A++LSI      +I
Sbjct: 58  LRFSIPGTILFASCSVYGRLASGNELAALKAAGVSPLAALWPGYAIALVLSIACVWLNDI 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                 S   +             +         D L I + + +    ++   +  +  
Sbjct: 118 GVSWG-SQGVRRVLVQSFEEIAYGMLRTHKSFSSDKLSILVREVDGRRLMRPQIVAAATP 176

Query: 181 TQTHKIYYAQSGSIDLDRQAIIL---------NDGEVHRKSPISKDISIMKFKSYTLQTE 231
           T    +  A    +  D    ++         +DG           +  +   S  L  E
Sbjct: 177 TSPQLLISAAEAELHSDENHQLIISLIDSRIESDGSQQGVFEHPGRMDHVVSLSDELSPE 236

Query: 232 SANSSTIVLKANDQNLSFLL--------------------------NPNPNNPNYRPELL 265
             + S I+     Q L                                 P + +Y    +
Sbjct: 237 HRSPSKILSSRIPQVLREERQIVQTQKEADIAWSAFAQIATLDAAQRTPPFDISYINSQI 296

Query: 266 ETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYI 325
              R+E  +R       + F L+ +  A K+            F+ + + F     F+  
Sbjct: 297 NRLRTEPWRRWANGFSCLFFVLLGVPLAIKQRNPDFVTSFFMAFLPVLLVFYPLLAFAVD 356

Query: 326 IHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             K    P     +      + S++ L +  +Y
Sbjct: 357 RAKDGAVPPQAVWIGNVALLLVSLYYLRMVWRY 389


>gi|85060086|ref|YP_455788.1| putative transport protein [Sodalis glossinidius str. 'morsitans']
 gi|84780606|dbj|BAE75383.1| putative transport protein [Sodalis glossinidius str. 'morsitans']
          Length = 366

 Score = 92.4 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 133/361 (36%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IITRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    M     L+ M   +E+ ++   G  +  LI+  L L+++ +I   ++   + 
Sbjct: 62  LILPLSLFMGLLMTLSRMYTESEITVMHACGLGKSILIRAALLLSLITAILAVVNVVWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        + ++A+   + + L E  F   ++   +       +   + +F+   +   
Sbjct: 122 PWSSRHQDLVMSEAKANPSMAALVEGQFKPAENGNSVLFVGNVKDKGFEHVFLAQLKPNG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G +       Q ++L+ G  +  + + +D  I  F  Y         + 
Sbjct: 182 NARPSVVIADRGHMSQRPDGSQLVMLDKGTRYEGTALLRDFRITDFTQYQAVIGRRAVAV 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A   +L  L                  R+E H R T  +  +I  ++         
Sbjct: 242 DGTDAEQMSLRQLWR----------SPEPEARAELHWRFTLVVSVLIMAMM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + +     +     P+L+++L  ++ + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQTSLRSNGAK-GKLDPMLWMWLTNVAYLALALVLNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|296125361|ref|YP_003632613.1| permease YjgP/YjgQ family protein [Brachyspira murdochii DSM 12563]
 gi|296017177|gb|ADG70414.1| permease YjgP/YjgQ family protein [Brachyspira murdochii DSM 12563]
          Length = 417

 Score = 92.4 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/416 (12%), Positives = 123/416 (29%), Gaps = 62/416 (14%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI+      FL   LF  F+  +  + + I L+ ++   L + L+   Y++P  
Sbjct: 1   MKKITKYIILETIGPFLAGILFFTFVFVIQLLPELIRLIMNNGAPLLMSLETFVYMLPFN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    M +      ++ + E++++   G   + +  P++ L     +F     N+
Sbjct: 61  IAITIPMSILMASIIGYGRLSSDNEIIVMRALGFPHMRIYMPIIILGFFTFMFSLFFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I  +     + L +          + +  F  + D  +   +KY  + ++  + I D   
Sbjct: 121 IMSESNYRYRALISYMVNIRPSIAVGKLEFTEISDMGFSIGAKYADDKSISNVVIYDKS- 179

Query: 181 TQTHKIYYAQSGSIDLDRQAI-----ILNDGEVHRK-SPISKDISIMKFKSYTLQT--ES 232
             T ++  A+ G    +          L DG V    +          F S  +      
Sbjct: 180 -DTKRVITAKYGLWKNNEANSQVVTLTLYDGVVQEMPNYGFVTNDYTVFDSMDINIIRNV 238

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET------------------------- 267
           +  ++      +     +L       +   + ++                          
Sbjct: 239 STLTSHERGLREMPSWEILKKIKEAKSNANKSVDEQITGMINNSYNNVKNTGIDITSFSN 298

Query: 268 -------------------------YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
                                    Y  EF+K ++     +   LI            + 
Sbjct: 299 EYIKTNSAELVSIREKAIEESVPYFYYVEFYKFISIPAACLFMVLIGAPLGIVGKRSGKG 358

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                  I + I + +      +    +  P     ++     ++ +    + + +
Sbjct: 359 FGFGISVIVVVIYYLLITAAELLAGGKKVPPILA--MWFPNIVLAIMGGFFMVRSF 412


>gi|261749332|ref|YP_003257017.1| hypothetical protein BPLAN_247 [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497424|gb|ACX83874.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 361

 Score = 92.4 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 116/365 (31%), Gaps = 13/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILL-KISGYLIPT 59
           MK  + YI+R I  +F+   + +  I+ +I + QR++ + ++  S+   L     +    
Sbjct: 1   MKILDRYIIRNILVTFIFITILLQIISVIIDLSQRMHRLENNQGSIKDALIYYYPFWSIW 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +    +P    +      + +N+++E+  I  +G S   +  P L  A L+ +   I   
Sbjct: 61  LAYTFSPISVFLSIIFFTSRLNKHSEINAILASGISFKRITIPYLISASLIGMGALIINY 120

Query: 120 IIEPKCRS---TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
              P               +          + +  ++ ++ Y+ I  ++    +    I 
Sbjct: 121 SFLPLANKMKNKFHYQYLLSSRYKNKYENNQTISTQISNNEYLFIRNFSRKKNIGQDCIY 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              +                 +    IL++      +           K           
Sbjct: 181 QKFNGNKLIYLLKAKNIFWYKKHRIYILSNYSETYLNKNKDIFFKGVHKIQNFSMTPEEL 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                 A    +S L              + T+ +E+++R +      I  L+ +     
Sbjct: 241 LPEEYIAETMTISELRKFIDREKKRGNSNINTHLNEYYQRTSYPFSNFILTLLGLSI--- 297

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLL 352
               ++ +  H   + + ++F   +          ++    Y    L   +F + + FL 
Sbjct: 298 --SSKKGEPAHNFIMGIILAFIYIFCTEISKVYSTKDYIPSYLSVWLPNGIFGMITFFLY 355

Query: 353 MIKKK 357
             + +
Sbjct: 356 WNRNR 360


>gi|300703336|ref|YP_003744938.1| permease [Ralstonia solanacearum CFBP2957]
 gi|299070999|emb|CBJ42308.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
           solanacearum CFBP2957]
          Length = 401

 Score = 92.4 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/395 (11%), Positives = 114/395 (28%), Gaps = 41/395 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +E Y  R I   F+     ++ +     +L  +  V     +L           PT 
Sbjct: 7   MPVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSVVGRYTTLIAFFH-VMLQAPTR 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + M   +E  I    G      +  +  +A+ L++  ++    
Sbjct: 66  VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRGALLSLFKIALPLALVTYVFGEF 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----------LYIKISKYNPNNT 169
           I PK     +++  +A  A   +     ++ +                ++ +    P+ T
Sbjct: 126 IGPKSEQFAQKVRLEALGATVSAEFRSGVWVKDRGPARPDGSGGEVTRFVNVGSLQPDQT 185

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK------------------ 211
           ++ + I +               +     Q+  L+D                        
Sbjct: 186 IRSLRIYEFDADYRLSSIRVAQQARYQGHQSWELDDVTETHFVEFPRKAGAAMPQDNRQA 245

Query: 212 SPISKDISIMKFKSYTLQTESANSS--------TIVLKANDQNLSFLLNPNPNNPNYRPE 263
            P + D     F+    +               ++++   ++  +  L     +     +
Sbjct: 246 VPGAPDALAPDFRGEQTKLPKQEMRSELTPQILSVLMVTPERMATLDLFQYIRHLRDNKQ 305

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
             + Y     K++      ++   +++  A      R       +F  + +        +
Sbjct: 306 DTQRYEIALWKKVVYPFTVLVMMALALPFAYL--HARAGAVGLKVFGGIMLGLSFQLVNN 363

Query: 324 YIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
              H    N  +  I    +     + + +I  ++
Sbjct: 364 LFSHVGLLN-TWPAIFTAIVPGALYLAVALIALRW 397


>gi|167835784|ref|ZP_02462667.1| hypothetical protein Bpse38_04783 [Burkholderia thailandensis
           MSMB43]
          Length = 365

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 119/340 (35%), Gaps = 18/340 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S   +   +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +    VLT   +++E+++   +G S   LIKP+   A  + I +     +  
Sbjct: 62  MILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F     +  +   +    +  +   +  +   Q
Sbjct: 122 PWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTEQ 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + ++    + I+L +G  +   P   +  IM+F+ Y ++ +S    + 
Sbjct: 182 GKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVSQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L NP   N            +EF  R    L  +   +++I  A     
Sbjct: 242 PTTTGTSTPDLLRNPTNQNL-----------AEFAWRAGLPLIAINLMILAIPLAY---Q 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
             +R +   + +++ I        + +  ++E+      +
Sbjct: 288 NPRRGRTVNLVMAVLIYLTYSNLLNVVQSQMERGKIAFGL 327


>gi|326316898|ref|YP_004234570.1| permease YjgP/YjgQ family protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373734|gb|ADX46003.1| permease YjgP/YjgQ family protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 365

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/365 (10%), Positives = 110/365 (30%), Gaps = 8/365 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPT 59
           MK+    I R    +     L  + + +   ++  +  V       ++  L      IP+
Sbjct: 1   MKTIRGLIYREALAAVGFVTLGFLALFFFFDMVDELRYVGRVQAYQMSHALLYVSLGIPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L  + P    + T  V+    +++E  I+  +G      ++ +L L +   +  F   +
Sbjct: 61  HLYELLPITVLIGTIFVMARFAQSSEFTIMRTSGLGPWRALRTLLVLGLGFVMLTFTVGD 120

Query: 120 IIEPKCRS-TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
            + P          +       T +        + D  + + +     +  +  + I + 
Sbjct: 121 YLAPATDRLAQLVRARYLGQITTGATGAWLKERQGDRSVAVNVRALRHDGGMSNVRIFEF 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       +          + +            +  + + +    +  +  S+ +
Sbjct: 181 DGDGRLASTLQAAAGEFGTDAWELSDVKRSVFHRRGEAEAHVERLQESRFRWPTHISADM 240

Query: 239 VLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           V       D+  +  L     +     +  + Y  EF +++   L  ++  ++S+  A  
Sbjct: 241 VAASLLKPDRMATIDLFQYIRHLESNGQAAQKYEIEFWRKVFYPLSCLVMVVLSLPFAYL 300

Query: 296 RALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLL 352
                         +   ISF +    F Y  +    +P+        +        F  
Sbjct: 301 HFRSGGIAGYVFGGVMAGISFFLLNNVFGYAGNLQNWSPWLTAAAPGIIYSLLSLGAFGW 360

Query: 353 MIKKK 357
           ++ ++
Sbjct: 361 LVLRR 365


>gi|282878370|ref|ZP_06287162.1| putative membrane protein [Prevotella buccalis ATCC 35310]
 gi|281299556|gb|EFA91933.1| putative membrane protein [Prevotella buccalis ATCC 35310]
          Length = 410

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/353 (10%), Positives = 103/353 (29%), Gaps = 4/353 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           +  + YI+R    +++ S   I+ IA V    + ++  +        I+       +P  
Sbjct: 51  RRIDWYIIRKFIGTYIYSIALIIAIAIVFDFNENLSKFTEYHAPARAIIFDYYANFVPYY 110

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ +  +G S   L++P +   +L++   +     
Sbjct: 111 SNLFSPLFVFIAVIFFTSKLAGNSEIIAMLASGISFKRLMRPYMLSCVLIASLSYYLSAS 170

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P          +  + +   +  +          +       N      G  +    +
Sbjct: 171 VIPHGTVIRHNFESLYRNSRKQTAADNVQLQVGKGVIAYIQHYDNKTKRGYGFSLDKFEN 230

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +      A     D    +    +    +   +      +   +          + +V 
Sbjct: 231 KKLVSHMTAMEIQYDTIADSKYHWNVTGWKIRQLKGLREHITSGADLDTLIQMEPTDLVY 290

Query: 241 KANDQNLS---FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               Q       L +      +     +  Y+ E+HKR+       I  +I    + ++ 
Sbjct: 291 SKGQQETFTSAELKDYISKQVDRGSSNVVQYQVEYHKRIASSFASFILTIIGFSLSARKR 350

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                  +       S+   +    +         P     +   +F + + F
Sbjct: 351 KGGMGLYLGLGLALSSLYILLQTVSATFAINANAPPILAAWIPNIIFALVAYF 403


>gi|299065987|emb|CBJ37168.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
           solanacearum CMR15]
          Length = 401

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/395 (13%), Positives = 117/395 (29%), Gaps = 41/395 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I   F+     ++ +     +L  +  V     +L           PT 
Sbjct: 7   MQVYEKYFARQIYGVFVFILFAVLALFVFFDMLSELGSVVGRYTTLIAFFH-VMLQAPTR 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + M   +E  I    G      +  +  +A+ L++  +I    
Sbjct: 66  VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALVTYIFGEF 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----------LYIKISKYNPNNT 169
           I PK     +++  +A  A   S     ++ +                ++ +    P+ T
Sbjct: 126 IGPKSEQFAQKVRLEALGATVSSGFRSGVWVKDRGPARPDGSGGEVTRFVNVGTLQPDQT 185

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS----------------- 212
           +QG+ I +               +     Q   LND    R                   
Sbjct: 186 IQGLRIYEFDTDYRLSSIRVAQQARYQGHQHWELNDVTETRFIEFPRHAGGATPQDSKQA 245

Query: 213 -PISKDISIMKFKSYTLQTESANSS--------TIVLKANDQNLSFLLNPNPNNPNYRPE 263
            P + D     F+    +    +          ++++   D+  +  L     +     +
Sbjct: 246 VPGAPDALAPDFRGEQTRLPKQDMRSELTPQILSVLMVTPDRMATLDLFQYIRHLRDNKQ 305

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
             + Y     K++      ++   +S+  A      R       +F  + +        +
Sbjct: 306 DTQRYEIALWKKVVYPFTVLVMMALSLPFAYL--HARAGAVGLKVFGGIMLGLSFQLVNN 363

Query: 324 YIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
              H    N  +  I    L     + + ++  ++
Sbjct: 364 LFSHVGLLN-TWPAIFTAILPGALYLAVALVALRW 397


>gi|85709345|ref|ZP_01040410.1| predicted permease [Erythrobacter sp. NAP1]
 gi|85688055|gb|EAQ28059.1| predicted permease [Erythrobacter sp. NAP1]
          Length = 365

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 116/355 (32%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
           +S  LY+ +      L   + +V +   + +L     +          ++K +   IP +
Sbjct: 9   RSLTLYLAKMFVVRILAVLVMLVLVLMALDLLGSTGKILEPEGNGQAEIIKYASLRIPQL 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P+   + T   L ++N+N+E++ +   G S   ++ P+L  A ++++  F     
Sbjct: 69  IARFLPYSVLLATLITLVTLNQNSEVVAMKAAGLSAHQVLAPLLLTAAVVALISFAFNER 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +  +  ST+K   A     +          +  D D  +  S    +     +  V    
Sbjct: 129 VVTRANSTLKAWEAVEYGPIPEQSGVRANVYLTDGDNILTASSLIGSGEDIELDNVTWYS 188

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                I   Q  +      A         R    S     +                  +
Sbjct: 189 RAPGGIISEQIKATGATYAAPGWRLENPKRFDVGSATTEPIDDVVVGEGLTPEQIDLQSV 248

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             + Q+   L +   +            R+++  RL+  L  ++  L+  VAA   A   
Sbjct: 249 DPDAQSFWEL-SETIDAYEAAGRRTSEMRAKWWHRLSGPLSALLMPLLGSVAAFGLARSG 307

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           Q      I ++L  ++ V    +  +      P ++     F   +     ++I+
Sbjct: 308 QLFVRAVIGMALGFAYFVVDNAALAMGSFGGYPPFLAAWAPFFLFLLVGETVLIR 362


>gi|325124204|gb|ADY83727.1| hypothetical protein BDGL_003141 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 350

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 114/339 (33%), Gaps = 14/339 (4%)

Query: 18  MSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVL 77
           M    +  I    ++++   + +      +IL  I GY +P  L ++ P  F +    V 
Sbjct: 1   MVISLLTLIMMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLTLILPLGFFIGLMLVF 60

Query: 78  TSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQ 137
             +  + E+ +++ +G SR  L + ++ + ++  +F  +    + P      ++L+    
Sbjct: 61  GRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVFQSVLMLWMTPWGLREFEKLTTTQA 120

Query: 138 LALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLD 197
           +   F  +    F           S       L+ IF       +        +      
Sbjct: 121 VRTGFDLVRPREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAKEDKPDVMILAKEATRV 180

Query: 198 R------QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLL 251
                    + L  G  +   P     +  +F+SY L+ E+           +   +  L
Sbjct: 181 EVANDTANVVDLVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKDVKFESGDVEALSTTKL 240

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
               N+P          RSE   RL      VI  ++S+  ++      +  ++ P    
Sbjct: 241 FSKTNDPV--------IRSELGWRLFGPFTIVIALMLSVALSEVSPRQGRYYRLIPAIFI 292

Query: 312 LSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
            S    +       I K E + +  P + +     +++F
Sbjct: 293 FSSLIVLMIAIKTRISKEELDIWAYPAVLVVYGVAAALF 331


>gi|148255227|ref|YP_001239812.1| putative permease [Bradyrhizobium sp. BTAi1]
 gi|146407400|gb|ABQ35906.1| putative permease [Bradyrhizobium sp. BTAi1]
          Length = 365

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 109/352 (30%), Gaps = 11/352 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y       S +     I  +  ++  ++ +   S  ++ S  ++ + S + +P +
Sbjct: 6   NTLGRYFAGRFLVSAVGVFASIFVLLVLVDYIEMVRKTSGLASASALMVAETSLFRVPQL 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + PFC  +       +++R  EL++    G S    I P L  AI+L +      N 
Sbjct: 66  LEKMMPFCVLIGAMTCYLALSRRLELVVARAAGVSAWQFIAPALASAIVLGLMATTLYNP 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    R   K++ A+   A     +++   F L+            N        V    
Sbjct: 126 MSANLRELSKRMEAELFGAAPGGGVQDASGFWLNQ--INPDGSVIINAARSEQQGVRLTG 183

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL----QTESANSS 236
               +    +     ++ +   L DG+   KS     +        T         A   
Sbjct: 184 LTLFRFDTEKHFKDRIEAREATLEDGQWVFKSVRRFSLDAPPVDEPTFILPTSLTPAQVR 243

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                    +   L +    +          YR ++HK + Q        +++   +   
Sbjct: 244 NSFSTPETVSFWQLPS-YIRSSESSGFATAGYRLQYHKLIAQPFLLAAMVMLAASVSL-- 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
              R       +   +   F ++   S +   + +     PI+  +L     
Sbjct: 301 RFFRMGGVQKMVLSGVGAGFLLY-VLSKVTEDLSKAALMDPIVAAWLPVFVG 351


>gi|329907053|ref|ZP_08274545.1| hypothetical protein IMCC9480_3108 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547110|gb|EGF31984.1| hypothetical protein IMCC9480_3108 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 376

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 127/360 (35%), Gaps = 18/360 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R +  +       +  I   + +++ +   +    +   +L + G+     +P
Sbjct: 2   IFQRALRRELISTAGAVFTTLFTITITVMLIKILGQAAGGKVASEDVLALIGFAALNYMP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    V+T   +++E+++   +G S    I  VL   + + + + +      
Sbjct: 62  VILILTTFISVLLVVTRSYQDSEMVVWFASGLSLTRWIPTVLSCGLPVVLVIALLSFYAT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           P    +  +   + +     + +    F      +    +     +        V++   
Sbjct: 122 PWANRSSSEFRERFEKRADIAKVAPGKFQESASSNRVFFVEGVTGDAMNVRNVFVNTVRD 181

Query: 182 QTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
               I  ++ G         + ++L++G  +  +   +D  +M+F+SY +   SA    +
Sbjct: 182 GKSSIVVSKEGRTEVDANGDKFLVLSNGRRYEGTLDERDFQLMEFESYGVLISSAVPGLM 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              ++    +  L  NP+  N           E   RL+  L  +   L++I       +
Sbjct: 242 ADLSSRSMSTMALLANPDGFNQG---------ELLWRLSLPLMCLFLMLLAIPLGF---V 289

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLMIKK 356
             +  +   + I+L +        S +   + QN    ++    + +  ++ I LL   +
Sbjct: 290 NPRGGRSANLIIALLLFVFYSNMISLMQAAVAQNRLGVWLAWWPVHVLAMAVIALLFSWR 349


>gi|283833700|ref|ZP_06353441.1| permease YjgP/YjgQ [Citrobacter youngae ATCC 29220]
 gi|291071386|gb|EFE09495.1| permease YjgP/YjgQ [Citrobacter youngae ATCC 29220]
          Length = 356

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 137/360 (38%), Gaps = 17/360 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E YI+  + R   +   F++FI  +    + +   ++ T +L  +L I  Y +   
Sbjct: 1   MRLIERYIMFEVSRLVAIIVGFLIFIFAIYSAQRYLTDAANGTLALTAVLAIVFYKVIIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  ++  +E+  +   G+S + L K V++ AI L I + +    
Sbjct: 61  LEMLLPVGLYVSVGIALGQLHAESEITALLAAGSSPLRLYKTVMYFAIPLGILVTLLSMF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P     I +L  ++Q  L  S+L    F   D    I  +  +P+       ++ +  
Sbjct: 121 GRPWAYMQIYRLEQQSQSELDISHLRARKFNVNDHGHMILAATISPDTGHLTDMLIYTPS 180

Query: 181 TQTHKIYYAQSGSIDLDRQ---AIILNDGEVHRKSPISKD-ISIMKFKSYTLQTESANSS 236
             T  ++ A  G I        ++ L+ G  +R    +    +   F+   +Q +    +
Sbjct: 181 ENTSSLFRAHCGDITNPSPLTPSVALHSGTSYRLDHHNGQGDNGQIFQRLNIQLKPLMQN 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            I  +      +   + +P +            +E   R+++ +  ++  L+++     R
Sbjct: 241 PITRRKASSMTALRTSTDPGDT-----------AELQWRISRGINALLMALLAVSV--SR 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +    I +SL  +   + G              IP ++L    +     ++I +
Sbjct: 288 VKPRQGRFSTLIPLSLLFTCIFYGGNVCRTLVANGALPVIPGVWLVQILMLFGVGMLIVR 347


>gi|113868947|ref|YP_727436.1| permease [Ralstonia eutropha H16]
 gi|113527723|emb|CAJ94068.1| predicted permease [Ralstonia eutropha H16]
          Length = 388

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/388 (13%), Positives = 124/388 (31%), Gaps = 34/388 (8%)

Query: 1   MKSF---ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           MK     E Y  R +   F      ++ +     +L  +  V ++  +  + L       
Sbjct: 1   MKILRVYERYFGRLVYGVFAFILFAVLSLFVFFDMLNELENV-NNQYTSLVALFHVLLQA 59

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           PT +  V P    +    V + +   +E  I    G +    +  +  LA+ L+I  FI 
Sbjct: 60  PTRVYEVLPIAVLISAIYVFSQLASQSEYTIFRVAGLNTRQALFSLFKLAVPLAIVTFIF 119

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----------LYIKISKYNPN 167
              I P+     +++  +A  A   S     ++ +  D            ++ ++   P+
Sbjct: 120 GEFIAPRAEQYAQKIKLEAIGATVSSGFRSGVWVKDRDKDAATGGGEITRFVNVAGLRPD 179

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP-------------- 213
            T+ GI + +       ++            Q   L      R                 
Sbjct: 180 QTITGITMYEFDPQYRLRMIRVAQEGRYQGGQLWELQGVNETRFIELASPAQGAKPARDS 239

Query: 214 --ISKDISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRS 270
                    +KF   T+ +E +    +++L   ++  +  L     +     +  + Y  
Sbjct: 240 LAPDFRAEQVKFPRVTMHSELTPQILSVLLVTPERMSTLDLFRYIRHLRDNKQDTQRYEI 299

Query: 271 EFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE 330
            F K++   L   +   +++  A   A            I L +SF +       +  + 
Sbjct: 300 AFWKKVIYPLTLFVMMALALPFAYLHARAGAVGVKVFGGIMLGLSFHLSNTLFSHVGLLH 359

Query: 331 QNPYYIPILYLFLFCISSIFLLMIKKKY 358
               + PI+   +     + + ++  ++
Sbjct: 360 ---TWPPIISALVPGTLYLMVALLALRW 384


>gi|72382010|ref|YP_291365.1| putative permease [Prochlorococcus marinus str. NATL2A]
 gi|72001860|gb|AAZ57662.1| unclassified ABC-type transport system permease [Prochlorococcus
           marinus str. NATL2A]
          Length = 395

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 125/375 (33%), Gaps = 20/375 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + +IL  +      S      ++  +  I   I  +       ++ ++I    +P+ +
Sbjct: 24  LLDRWILFELLPPLFFSIAAFTVVSLSVGVIFDLIRKIVEIGLPFSVAIQILLLKLPSFV 83

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T     S+N N+E+  + + G S   LI P L L+I +S   FI  N I
Sbjct: 84  VISFPMAMLLSTLLAYGSLNDNSEIKALKSIGISVYRLILPGLILSIFMSYMTFIFNNNI 143

Query: 122 EPKCRSTIKQLSAKAQLALTFSYL-------------EENLFFRLDDDLYIKISKYNPNN 168
            P      + + A +      +               +    ++ +   ++  +    + 
Sbjct: 144 VPSTNKNAEIILANSLGRSFANEQGEDIIFSKKGEILDPYSSYKKNGVTHLFYAWKFIDG 203

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            +  + ++D       ++  A+ G  + D+      +G++   SP   + +  KF S+  
Sbjct: 204 QMLDVTVIDFSKLGFTQMLKAKKGIWNSDKNNWEFFEGDILTLSPDGSN-TRTKFLSFLY 262

Query: 229 QTESA--NSSTIVLKANDQNLSFLLNPNP-NNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
              +   N + +   AND NL            +   +     +    +++T  +   +F
Sbjct: 263 PLGTELTNIAQLPKDANDMNLGEANTAMKLYQSSGNIKEARRMKVRIQEKITLPIACSVF 322

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
            LI           R   +     +S+ +    +           +              
Sbjct: 323 ALIGCSFGVM--QKRGGGRSQSFGLSIILILIYYILSFSFSSLGVKGIINPFFAAWSPVF 380

Query: 346 ISSIFLLMIKKKYTK 360
           +S +    + K+ +K
Sbjct: 381 LSMLGGGFLLKQASK 395


>gi|187929751|ref|YP_001900238.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12J]
 gi|309781533|ref|ZP_07676269.1| membrane protein [Ralstonia sp. 5_7_47FAA]
 gi|187726641|gb|ACD27806.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12J]
 gi|308919946|gb|EFP65607.1| membrane protein [Ralstonia sp. 5_7_47FAA]
          Length = 372

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/363 (12%), Positives = 119/363 (32%), Gaps = 18/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     L ++       +++ + + ++   + N +L + G      L 
Sbjct: 2   IFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEANPNDVLLLIGLATLGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++   +G S    I+PVL  ++   + + +      
Sbjct: 62  ILLCATLFISVLLVLTRWYKDSEMVVWFTSGISLTDFIRPVLRFSLPFIVLVALLALFGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P           + +     S +    F       Y+   +   +       +  +   Q
Sbjct: 122 PWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDSGMKHARNLFVANAEQ 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                      +  ++    + ++L+ G  +  +P   D  I++F  Y ++  +      
Sbjct: 182 DKIGVAVAKTGEFKTMPNGDRFVVLDKGRRYEGTPGKLDYRIVEFDKYGVKVANKPPQAD 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                    +  L  +P   N           E   R+   L  + F LI+I  A    +
Sbjct: 242 ANLPTKSRSTKDLLADPTPENLG---------ELVWRIGLPLLALNFVLIAIPLAY---V 289

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIKK 356
             +  +  P+  ++ I        +     +   +   ++    + L       LL   +
Sbjct: 290 NPRLGRYTPMIFAVLIYLTYSNLLNLSQAWVSQGKMNVFMAWWPIHLAAFICAVLLFRFR 349

Query: 357 KYT 359
            Y+
Sbjct: 350 HYS 352


>gi|300870020|ref|YP_003784891.1| putative permease [Brachyspira pilosicoli 95/1000]
 gi|300687719|gb|ADK30390.1| putative permease, YjgP/YjgQ family [Brachyspira pilosicoli
           95/1000]
          Length = 356

 Score = 91.6 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 114/353 (32%), Gaps = 2/353 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L+     F+ S +  V +  +  +  +++  +   E++   +       P  
Sbjct: 1   MKKLNSYLLKEFLSMFVGSLILFVILVTIADLSSKLSYYTEHPENMKYFITYHAARTPHN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P      +T VL +  +N E+L + N+G S      P+  + I L + L      
Sbjct: 61  LYYLFPIALMFSSTYVLGTFVKNKEMLAVQNSGISLFKFSSPIFIIVIALCLGLIGFWQF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +         + +   +      Y      F  ++ +Y   +    +N L    IV  ++
Sbjct: 121 VAAPMNKISFEANDLGRGHKKGEYTGSLNIFGANNYIYFIENFNFNDNYLTNTVIVKLKE 180

Query: 181 TQ-THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                    + S   + + +      G +   +   K+IS+ +  +Y L         + 
Sbjct: 181 DGAIDMRISSPSVRWNDNEKKWYAETGILAEFT-DKKNISVKEITNYPLDVLERPEHFMN 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             A D                      T  ++FH R++      I  L++ + +      
Sbjct: 240 RPALDSMSLTEEMHWIKLRKEVNLNTNTLETDFHYRISYCFSGFIIVLLASLFSKFSTQS 299

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                +  + +   + + +   F  +      NP+    +   +F        
Sbjct: 300 VLVVSLVMVIMVALVYYSILMMFRSMGDGGNMNPFIAAWMPNIIFAGLCFLAF 352


>gi|149371725|ref|ZP_01891141.1| hypothetical protein SCB49_09980 [unidentified eubacterium SCB49]
 gi|149355352|gb|EDM43912.1| hypothetical protein SCB49_09980 [unidentified eubacterium SCB49]
          Length = 338

 Score = 91.6 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/341 (12%), Positives = 104/341 (30%), Gaps = 6/341 (1%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTS 79
            L  + I   + + ++I+ +  +    N +             ++ P    +      + 
Sbjct: 1   MLLFIPIGITVHLAEKIDKILDNEVPFNAVAIYFLEFTVYFANLLFPLFLFLSVIWFTSK 60

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           +  NTE++   ++G S    ++P +  A ++ +        + P   +   + + K  + 
Sbjct: 61  LANNTEVIAFLSSGVSYYRFLRPFMIGATIIFVLGLGLTLYLAPLASTGYNEFTYKYLVR 120

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ 199
                         D+D          +N+     +    + +      A     +    
Sbjct: 121 KKDRDKGNIFRQINDNDYIYVSYFNTLDNSGSHFTLEHFEEEKLVYKISANRIRYNEKDS 180

Query: 200 AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPN 259
              L   +          +        T   +  + + +   A   N S L +       
Sbjct: 181 TYTLQSYKKRTIGVNDDILESRASLDTTFSFKLEDLTPVKYIAETLNYSKLNSYIEQEKE 240

Query: 260 YRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
                +  Y  E +KR +      I  +I++      ++ R+      + I + I     
Sbjct: 241 RGSSYINRYVLEKYKRFSIPFSVFILTIIAVSV---SSVKRRGGMGANLAIGIGIGMIFV 297

Query: 320 W---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +    F  +  + + +P         +F I +I+LL   K+
Sbjct: 298 FFDKIFGTLAQQSDFSPLVATWFPNVIFAILAIYLLRNAKR 338


>gi|183219955|ref|YP_001837951.1| hypothetical protein LEPBI_I0537 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910079|ref|YP_001961634.1| permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167774755|gb|ABZ93056.1| Permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778377|gb|ABZ96675.1| Conserved hypothetical protein; putative membrane protein
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 378

 Score = 91.6 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/361 (11%), Positives = 119/361 (32%), Gaps = 10/361 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           ++ + Y+     ++F+ + + +  +  + +    +  + SS  + + +     Y +P+++
Sbjct: 19  RTLDRYLFFDFFKTFIGTLIMLTSMIVIYKFTDVMKYLVSSKVNQSHVYLHVLYSLPSMV 78

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V           V+   + N EL+ +   G S + +I P+LF  I++ + + +   I+
Sbjct: 79  DQVVAPALMFSVCFVIGQFSVNKELVAMMVAGVSFMRIITPILFFGIVIWLVMTLFGQIV 138

Query: 122 EPKCRSTIKQLSAKA---QLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
                   +   +        L     + ++  +        I +          +   +
Sbjct: 139 VIPANKNAQIQFSIMAKGSNRLIDFVYQLHIKGKKGFYYVYWIDEKENTIKGGFNYFEIT 198

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--S 236
            D        +Q         + +L D E  R +   + +S  K+   T       +  S
Sbjct: 199 PDGYPTYTVSSQKAKFIPSPHSWVLYDAEEVRFNENLELVSRTKYAEKTYDFPEDLAYFS 258

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +    + N   L +    +   +         + H   +  L   +   +    A   
Sbjct: 259 KPIRNPEEMNFFELADE-IQSRITKGIPFRNVIVQQHMAFSMPLMSFVVVTLG---ALAG 314

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP-YYIPILYLFLFCISSIFLLMIK 355
           A+ ++   +  + +++++    +   S      E         +++     ++    + +
Sbjct: 315 AITKRSAGVASLGLTIAVVLLYYILNSTAKTLAENGALPIWIGMWITPVIFTTAAYYLYR 374

Query: 356 K 356
           K
Sbjct: 375 K 375


>gi|124267132|ref|YP_001021136.1| putative transmembrane protein [Methylibium petroleiphilum PM1]
 gi|124259907|gb|ABM94901.1| putative transmembrane protein [Methylibium petroleiphilum PM1]
          Length = 363

 Score = 91.6 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 134/362 (37%), Gaps = 15/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R + RSF  + + I+ I   + +++ +   +  + +   +  + GY+    LP
Sbjct: 2   LFDSTLRRDLARSFGATLVVIMTIVITMFLIRTLGQAAGGSVAAQDVALLLGYVALENLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     LT M R++E++I   +G   +  + PVL L   L + + +    + 
Sbjct: 62  TILSLSLFIAVVTTLTRMYRDSEMVIWFASGVGLLRFVPPVLRLTAPLLLLVALLALFVW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           P     I +L  + Q     + +    F    D      I +      +     V  R  
Sbjct: 122 PWGNRQIAELKDRYQRRSDVARVAPGQFQSSADGKRTFFIERDTGEGNIARNVFVLERKP 181

Query: 182 QTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA-NSSTI 238
            +  +  A++G I++D   + ++L  G+ +  +  + +  + +F SY +    A +S   
Sbjct: 182 DSESVTSARTGRIEMDGDQRFVVLESGQRNDINLATGERKLAQFDSYRVLAGEAVSSGAD 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L    ++   LL           +    +  E   R+   +  +   L+ I  A     
Sbjct: 242 NLPPKARSTWDLLT----------QPSNRHFGELAWRIGLAVGGINLVLLGIGLAGGNPR 291

Query: 299 VRQRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 +    ++  + F  +    +++     +    + +++   F ++   L   ++ 
Sbjct: 292 RAGSWNLLFALLAFVVYFNLLNLSQAWVASGKLEIGIVLLLIHGGSFVLAVSLLWWRERG 351

Query: 358 YT 359
            +
Sbjct: 352 AS 353


>gi|283833699|ref|ZP_06353440.1| putative permease [Citrobacter youngae ATCC 29220]
 gi|291071385|gb|EFE09494.1| putative permease [Citrobacter youngae ATCC 29220]
          Length = 360

 Score = 91.6 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 123/362 (33%), Gaps = 6/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNIFSRYLIRYVFIGFAAAAGILLPLFTTFNLINELDDVSPGGYRWPQAVIVVLMTLPRN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++  EL  I +TG S   +    L   +++   L +++  
Sbjct: 61  LIDLSPFIALLGGIAGLGHLSKTMELTAIRSTGLSIFKIAMITLTAGVMIIALLAVTDEW 120

Query: 121 IEPK-CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           I     +  ++  +          + + N+ +    D +  I   +  N   GI I   R
Sbjct: 121 IAAPLQQHALRIRTTAMAQDPNADHQKNNMLWARRGDAFATIKSLDAKNQPVGIEIFHYR 180

Query: 180 DT-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                    YA+ G +  +    +  +G   ++    ++ + +  +       +  +  +
Sbjct: 181 PDLSLETYIYAEKGRVLKNGTWTL--EGVYEKRWLDGRETTEVHKQQQWKSIFTRINLEM 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           +           L    +      +    +R    ++L + L  +   L++I      ++
Sbjct: 239 LTMPAGSFSIKQLRSYISYLQDTGQPSIEFRVALWQKLGRPLLTLAMMLLAIPFTF--SI 296

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R       + + + +    +     I++        + +  L       I  L++  ++
Sbjct: 297 PRSPGIGSRLAMGVIVGLLTYISDQIIVNIGILFDLQVQLTVLCPPVALLIIALILVSRF 356

Query: 359 TK 360
            +
Sbjct: 357 NR 358


>gi|300718281|ref|YP_003743084.1| permease [Erwinia billingiae Eb661]
 gi|299064117|emb|CAX61237.1| Putative permease [Erwinia billingiae Eb661]
          Length = 356

 Score = 91.6 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/370 (16%), Positives = 140/370 (37%), Gaps = 24/370 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI   I R  ++   F+V +       + +   ++ T +L ++  +  Y +   
Sbjct: 1   MSLIERYITVEIRRLVMVIVGFLVVMFASYSAQRYLTDAANGTLALQVVFDVVCYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    + T   L  +  ++E+  I   G S + L K VLFLAI L++ + +    
Sbjct: 61  LEMLLPVGLYVATAVALGQLYTDSEITAIFAAGASPVRLYKAVLFLAIPLAVVVTLLSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P     I +L  ++Q  L  S+L+ N F        +  S+ +P +      ++ SR 
Sbjct: 121 GRPWAYGNIYRLEQQSQSVLDVSHLQANKFNVNGSGRMVMASRIDPASHQLTDALIYSRS 180

Query: 181 TQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +   +Y A S  +        ++ L +G  +         ++  + S  +  +    S 
Sbjct: 181 GKNTNLYRAHSVVVTDPSPATPSVNLRNGTAYVLDREGAQDNMQHYHSLNIALKPFIESQ 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V + +        + +P +           ++E   R ++ L  ++  L++I       
Sbjct: 241 EVRRKSAPVADLWCSSDPAD-----------KAELQWRESRGLSTLLMVLLAIPL---SR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFL---- 351
              ++ +   +     +   +F+G +     +     P    +  + L  ++ +      
Sbjct: 287 TKPRQGRYATLLPLTLLFTAIFYGGNVCRTLVANGSLPAIPGVWLVPLVMLTGLAFCLAR 346

Query: 352 -LMIKKKYTK 360
              + +K+++
Sbjct: 347 DFSLLRKFSR 356


>gi|319793491|ref|YP_004155131.1| permease yjgp/yjgq family protein [Variovorax paradoxus EPS]
 gi|315595954|gb|ADU37020.1| permease YjgP/YjgQ family protein [Variovorax paradoxus EPS]
          Length = 379

 Score = 91.6 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 129/358 (36%), Gaps = 14/358 (3%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           + + + RSF  + + +V I   + +++ + L S  + +   +  +  Y +   +P +   
Sbjct: 7   LRKELSRSFGATLVVLVTIVMTMMLIRTLGLASKGSVNPQEVFLVMAYTVLGYMPTILSL 66

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +     L+ M R++E++I  ++G      ++P+   A  + I + +   +  P   S
Sbjct: 67  SLFIAIVGTLSRMYRDSEMVIWFSSGRGLADFVEPLFRFAWPVLILIAVMALVGWPWANS 126

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
               +  + +       +    F      +    I K  P+        + + +      
Sbjct: 127 QTMGMRQQYEQRSDIERVTPGEFRESSGRMRVFFIDKDTPDGATATNVFIWAIERGLQIT 186

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPI---SKDISIMKFKSYTLQTESANSSTIVLKAN 243
             A+SG I+       L      R       +  + I +FK+Y  +   ++ +T      
Sbjct: 187 TSARSGRIEDVGPNRFLMLSNGQRLERPLLPTSGLKISEFKTYGTRAGGSSDATANTTPP 246

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADKRALVRQR 302
               +  L  + +              E   R+   L  + F L+++ V++    + R  
Sbjct: 247 RARTTLSLLRDRSTAALG---------ELGWRIGMLLAAINFVLLALTVSSVNPRVGRSG 297

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
             +  +F  +     +  G S+I         ++ +L+  +F I+  +L +    + +
Sbjct: 298 NLLFALFAFVIYYNLLNLGQSWISSGRYGMGTFMLLLHGGVFLIAVAWLGLRNNNWAR 355


>gi|300690718|ref|YP_003751713.1| permease, predicted YjgP/YjgQ family [Ralstonia solanacearum PSI07]
 gi|299077778|emb|CBJ50416.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
           solanacearum PSI07]
          Length = 398

 Score = 91.6 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/396 (11%), Positives = 111/396 (28%), Gaps = 43/396 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +E Y  R I   F+     ++ +     +L  +  V     +L           PT 
Sbjct: 4   MPVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSVVGRYTTLIAFFH-VMLQAPTR 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + M   +E  I    G      +  +  +A+ L++  ++    
Sbjct: 63  VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALVTYVFGEF 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----------LYIKISKYNPNNT 169
           I PK     +++  +A  A   +     ++ +                ++ +    P+ T
Sbjct: 123 IGPKSEQFAQKVRLEALGATVSAEFRSGVWVKDRGPARPDGSGGEVTRFVNVGSLQPDQT 182

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS----------------- 212
           ++ + + +               +     Q   LND    R                   
Sbjct: 183 IRNLRVYEFDADYRLSSIRVAQQASYQGHQRWELNDVTETRFIEFPRQAGAATPQDSKQA 242

Query: 213 ----------PISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP 262
                         + + +  +    +      S +++  +      L      +     
Sbjct: 243 VPGAPDALAPDFRGEQTKLPKQEMRSELTPQILSVLMVTPDRMATLDLFQ-YIRHLRDNK 301

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
           +  + Y     K++      ++   +S+  A      R       +F  + +        
Sbjct: 302 QDTQRYEIALWKKVVYPFTVLVMMALSLPFAYL--HARAGAVGLKVFGGIMLGLSFQLVN 359

Query: 323 SYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
           +   H    N  +  I    L     + + ++  ++
Sbjct: 360 NLFSHVGLLN-TWPAIFTAILPGALYLAVALVALRW 394


>gi|294670275|ref|ZP_06735168.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291308012|gb|EFE49255.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 370

 Score = 91.6 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 133/360 (36%), Gaps = 21/360 (5%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
            ++ +  + +   + I+ +    Q +  +   +    +++ +  + G+    + P++   
Sbjct: 7   FVKELTFTAIGIFVVILAVLVSTQAINLLGRAADGRVAVDAVAALIGFWTLGMTPLLLVL 66

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              + T  VLT   R++E+ +  + G S    ++PVL  A+  +  +   +  + P    
Sbjct: 67  TAYISTLTVLTRFWRDSEMSVWLSCGLSLRQWVRPVLSFALPFAALVAAMQLSVLPWAEL 126

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDD---DLYIKISKYNPNNTLQGIFIVDSRDTQTH 184
             ++ +   +     S +E   F  L      +Y   +    +  ++ +F+ +  D    
Sbjct: 127 RSREFAEILKQKQELSMVEAGEFRTLGKKNGRVYFVGTFDTGSGIMKNLFLREQDDKGRE 186

Query: 185 KIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSSTIVLK 241
            I +A+ G      +++ + L  G  +   P   D + + F+   L    +      +  
Sbjct: 187 NIIFAKEGRFSLTDNKRTLELTQGYRYGGIPGEADYNQVSFEHLNLIISATPKIINPIDH 246

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                 + L+                +R+E   RL+  L  +I  ++++          +
Sbjct: 247 RRTIPTAKLI----------GSDNPQHRAELMWRLSLPLAALILSILAVPL---SYFNPR 293

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLMIKKKYT 359
               + I  ++        G +++ + IE +   ++   L + +  +++  +L+  +   
Sbjct: 294 TGHTYNILFAIGFFLIYQNGLTFLRNAIENSKLGFWTGFLPIHIIMLAAAVILLRVRSMP 353


>gi|302383688|ref|YP_003819511.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194316|gb|ADL01888.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 381

 Score = 91.6 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/364 (13%), Positives = 107/364 (29%), Gaps = 15/364 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPT 59
           +   E Y+L  +G+S  ++   I  +  +I  ++    + S    S   +L +     P 
Sbjct: 20  LGRIERYVLLQLGKSLAVALGVISALVMLIDFVEISRGLGSDTDLSGVRILGLMLIKSPA 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+  + PF F   T      +NR +EL+ +   G S    + P    A+   +       
Sbjct: 80  VIVQLLPFVFLFGTLAAFVGLNRRSELIAMRAAGVSAWRFVLPAAGAALAAGVLTVTVIG 139

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG-----IF 174
            +        ++   +   A+     E       +    + +     +           F
Sbjct: 140 PLAASGDGMFQRERGRISGAVGGGEQEAIWLREGEGQRQMVVRAARQDRANARLLDVTFF 199

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS--PISKDISIMKFKSYTLQTES 232
           I  +              +      +  L+ G                 ++ +  L +  
Sbjct: 200 IYATDPEGRRAFTERIDAA------SASLSAGRWRLVDAVGAQTGQRATRYSTLDLPSSL 253

Query: 233 ANSSTIVLKANDQNLSFLLNP-NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           A+       A  Q+  F   P               YR    + L+  L      +++  
Sbjct: 254 ADDEAFERFARPQSTPFWSLPGQIQRIEAAGFSSTAYRLRLQQLLSTPLAFAAMTILAAA 313

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            + +   +    ++    + L  +F     FS  +   E  P +I      +    + F 
Sbjct: 314 FSLRLMRLGDLARMAVAAVVLGFAFFFLNQFSAAMGSAEVVPPFIAAWLPAVLTALAAFT 373

Query: 352 LMIK 355
           L+  
Sbjct: 374 LLFY 377


>gi|89900899|ref|YP_523370.1| permease YjgP/YjgQ [Rhodoferax ferrireducens T118]
 gi|89345636|gb|ABD69839.1| permease YjgP/YjgQ [Rhodoferax ferrireducens T118]
          Length = 373

 Score = 91.6 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 129/355 (36%), Gaps = 13/355 (3%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           I + + RSF  + + +  +   + +++ +   S  + + + ++ + GY +   +P +   
Sbjct: 7   IRKELARSFGATLIVLATVVMTMTLIRTLGQASRGSFNPSDVMLVMGYTVLAYMPTILTM 66

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +     L+ M R++E++I  ++G     L+ P+   A  + + +     ++ P    
Sbjct: 67  SLFIAIIATLSRMYRDSEMVIWFSSGKGLAALLGPLFRFAWPVLLVVAALALLVLPWSNQ 126

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
            I+ L  + +       +E   F           + K            + + +     I
Sbjct: 127 RIETLKDQYEKRGDIERIEPGQFQESAGGKRVFFVEKDATGKQAGNNVFIATNEDGKETI 186

Query: 187 YYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
             A+ G I+     + ++L++G+       + D+ I +F+ Y ++      S       +
Sbjct: 187 TSARRGRIETIGQDRFLMLSNGQRLESVLGTSDLKISEFEEYGIKVGKDVLSGSNYVPIN 246

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA-ADKRALVRQRK 303
              +  L  N   PN          +E   R+   L  + F +I I        + R   
Sbjct: 247 TQPTLALFKNQTLPN---------LAELSWRIGLILAAINFVIIGIAVSGVNPRVGRSAN 297

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  +F  +     +  G S+I        +++ +++     +  ++L      +
Sbjct: 298 LVFSLFAFVLYYNLLSLGQSWIASGKFTFGWFLAVVHGGALVLGILWLAKGHNNW 352


>gi|300703337|ref|YP_003744939.1| permease [Ralstonia solanacearum CFBP2957]
 gi|299071000|emb|CBJ42309.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
           solanacearum CFBP2957]
          Length = 372

 Score = 91.6 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 114/364 (31%), Gaps = 20/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     L ++       +++ + + ++   S N +L + G      L 
Sbjct: 2   IFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLATLGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++    G S    I+PVL  ++   + + +      
Sbjct: 62  ILLCATLFISVLLVLTRWYKDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVALLALFGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P           + +     S +    F       Y+   +           +  +    
Sbjct: 122 PWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANAEA 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT-ESANSST 237
                      +  +     + ++L+ G  +  +P   D  I++F  Y ++         
Sbjct: 182 DKIGVALAKTGEFKTSPNGDRYVLLDKGRRYEGTPGQLDYRIVEFDRYGVKVASKPPQVD 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             L    +  + LL+                  E   R+   L  + F LI++  A    
Sbjct: 242 ANLPTKSRPTTELLS----------NPTPENLGELVWRIGLPLLALNFVLIAVPLAY--- 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIK 355
           +  +  +  P+  ++ I        +     +   +    +    + L       LL   
Sbjct: 289 VNPRLGRYTPMIFAVLIYLTYSNLLNLSQAWVAQGKMNAMLAWWPIHLLAFVCAVLLFRF 348

Query: 356 KKYT 359
           + Y+
Sbjct: 349 RHYS 352


>gi|206602447|gb|EDZ38928.1| Putative permease, YjgP/YjgQ family [Leptospirillum sp. Group II
           '5-way CG']
          Length = 378

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 120/360 (33%), Gaps = 7/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+   +   F++  L +V +    Q L  +NL+ +   S+  +L++   + P  
Sbjct: 1   MKIIHRYLFLELLPPFVIGLLVLVVLILTQQTLMIMNLLVNKGLSIPTVLRLVMMIFPQF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P      +T     +  + E+  +  +G     L+ P++  A L  +  F     
Sbjct: 61  LTMIIPVSVLAASTATFNRLASDGEITALKASGIGLSRLLWPLVLFAFLGYVGSFYMSLK 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            E     +++++ +          +   +F    D   I + +    + +QG+FI     
Sbjct: 121 AEETQGMSLQEMISTVLKKKMSLGIRPQVFNNFMDRFVIYVDRMPTFSRMQGVFIYQEGK 180

Query: 181 TQTH-KIYYAQSGSIDLDRQAIILNDGEVHRKS--PISKDISIMKFKSYTLQTESANSST 237
            ++   +  A+ GS+  +         ++   +          ++F SY L     ++  
Sbjct: 181 GKSPSTVIMAREGSLLNEENGRPGIRIQLRSGTLLQGGAAQQFVRFSSYDLTIFGKSAGA 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                        L       +     L     + +K  T     +IF  + I       
Sbjct: 241 TEKSP----TIQELEKKIGRSSKPDVSLLRELEDRYKNYTYPFSCLIFAFLGIPFGIYAK 296

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              +         S+   + +      ++ +    P+   ++          FLL++  K
Sbjct: 297 RSGKLAGFVFATASVIFFYILNTVDDLMVARRLLKPFVASLIPDLALGAVMGFLLIMVFK 356


>gi|118594056|ref|ZP_01551403.1| permease YjgP/YjgQ [Methylophilales bacterium HTCC2181]
 gi|118439834|gb|EAV46461.1| permease YjgP/YjgQ [Methylophilales bacterium HTCC2181]
          Length = 372

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/358 (11%), Positives = 119/358 (33%), Gaps = 6/358 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R +  + L + L +  I    + +      +  +   + +  +  + +   +P
Sbjct: 2   LFKKSLTRELFFTSLSTILVLSGIVVAQRAVIVFRFAARGSIPNDAIDTVLVFNLLKHMP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +     L+   +++E++I  ++G    +LIKP++     + I +      I 
Sbjct: 62  LLLSLTVFITILITLSRWYKDSEMIIWFSSGLGLYSLIKPIILFCFPIIILIASLSLYIS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      ++     +     + +    F     +  I   +   +   +   I       
Sbjct: 122 PWAVQKAEEYKTGLKSRDEIATITPGTFKESKSNNRIFYIEGFSSLGSKVKNIFIQSMQN 181

Query: 183 THKIYYA----QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                      +    + +   I+L +G  +     SK+ S   F  Y +  E    + +
Sbjct: 182 GKLGVIVSNEGERIEDNNNNNYIVLKNGRRYEGIANSKEFSTTTFDEYGILMEKTPKNNL 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            + A    +           N      + + +E   R++  L  +    ++I  +     
Sbjct: 242 NVGAKA-GIIEATPTLALIFNQNDSNRKQFLAELMWRISLPLSTIFLIFLAIPLSFINNR 300

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             +      + + + + +  F G    +  + + P ++  L + L      F L+ ++
Sbjct: 301 TGRSFN-MIVAVFIFVIYNNFLGIFQSLISVGKIPLWLGFLPVHLVFGLVAFYLLHRR 357


>gi|299133713|ref|ZP_07026907.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
 gi|298591549|gb|EFI51750.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
          Length = 360

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 110/355 (30%), Gaps = 9/355 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPTV 60
            +   Y  R    + L   L I  +  ++  ++ +   SS    S  ++ + S + +P +
Sbjct: 4   TTLARYFARRFIIASLAVFLGIFLLLVLVDYIEMVRRTSSIPTASAIMVAETSLFRVPQL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + PFC  +   +   +++R+ EL++    G S    I P L  A+L+ +   +  N 
Sbjct: 64  LEKLMPFCILIGAMSCYLALSRSLELVVARAAGISAWQFITPALVAALLMGVLATVVYNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGIFIVDS 178
           I    +   K++ AK         +E++   ++  +    IS        T      V  
Sbjct: 124 ISAAMQERSKEMEAKLFSNGGVQNVEQSWINQVTSEGQSIISAALSQNQGTRLSGVTVFR 183

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +          +   +L+     L    +H  +        +  K+       A     
Sbjct: 184 FNPDGSFRDRIDANEANLEPGEWRLGGARIHSMTAAPVIQDNLLLKT---NLTPAQVRNS 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                  +   L      +          YR ++ K L +        L++   +     
Sbjct: 241 FATPETVSFWQL-PGYIQSSASSGLATAGYRLQYQKLLARPFLLASMVLVAAAVSL--RF 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            R       +   ++  F ++          +    Y         C+  +   +
Sbjct: 298 FRFGGVQKMVLSGVAAGFLLYVLSKVTEDLSKAELMYPLAAAWLPVCVGGLTGFL 352


>gi|209885475|ref|YP_002289332.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
 gi|209873671|gb|ACI93467.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
          Length = 364

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 114/354 (32%), Gaps = 6/354 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPTV 60
            +   Y  R    +     L I  +  ++  ++ +   SS    S  ++ + S + +P +
Sbjct: 8   TTLARYFARRFIVASCAVFLGIFLLLVLVDYIEMVRRTSSIPTASAFMVAQTSLFRVPQL 67

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + PFC  +   +   +++R+ EL++    G S    I P L  A+++ I   ++ N 
Sbjct: 68  LERLMPFCILIGAMSCYLALSRSLELVVARAAGISAWQFITPALVSALVMGILATVAYNP 127

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I    +   K++ A+         + ++   ++  +    IS     N    +  V    
Sbjct: 128 ISAAMQERSKEMEAQLFSNGGVQDVAQSWINQVTSEGQSIISAALSQNQGTRLSGVTVFR 187

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                 +  +  + D + +      G     S  +  I    F   +     +       
Sbjct: 188 FNPDGSFRDRIDARDANLEPGQWRLGGARIYSMTAAPIPHDSFL-LSTNLTPSQVRNSFA 246

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L      +          YR ++ K L +        L++   +      R
Sbjct: 247 TPETVSFWQL-PEYIRSSQSSGLATAGYRLQYQKLLARPFLLASMVLVAAAVSL--RFFR 303

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                  +   ++  F ++   S +   + +     P+   +L       +  +
Sbjct: 304 FGGVQKMVLSGVAAGFLLY-VLSKVTEDLSKAELMHPLAAAWLPVCVGGLIGFL 356


>gi|17547136|ref|NP_520538.1| hypothetical protein RSc2417 [Ralstonia solanacearum GMI1000]
 gi|17429438|emb|CAD16124.1| putative permease transmembrane protein [Ralstonia solanacearum
           GMI1000]
          Length = 401

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 117/396 (29%), Gaps = 41/396 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I   F+     ++ +     +L  +  V     +L           PT 
Sbjct: 7   MQVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSVVGRYTTLIAFFH-VMLQAPTR 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + M   +E  I    G      +  +  +A+ L++  ++    
Sbjct: 66  VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALVTYVFGEF 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----------LYIKISKYNPNNT 169
           I PK     +++  +A  A   S     ++ +                ++ +    PN T
Sbjct: 126 IGPKSEQFAQKVRLEALGATVSSGFRSGVWVKDRGPARPDGSGGEVTRFVNVGTLQPNQT 185

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS----------------- 212
           +QG+ I +               +     Q   LND    R                   
Sbjct: 186 IQGLRIYEFDANYRLSSIRVAQQARYQGHQHWELNDVTETRFIEFPRHAGAATPQDSKQA 245

Query: 213 -PISKDISIMKFKSYTLQTESANSS--------TIVLKANDQNLSFLLNPNPNNPNYRPE 263
            P + D     F+    +    +          ++++   D+  +  L     +     +
Sbjct: 246 VPGAPDALAPDFRGEQTRLPKQDMRSELTPQILSVLMVTPDRMATLDLFQYIRHLRDNKQ 305

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
             + Y     K++      ++   +S+  A      R       +F  + +        +
Sbjct: 306 DTQRYEIALWKKVVYPFTVLVMMALSLPFAYL--HARAGAVGLKVFGGIMLGLSFQLVNN 363

Query: 324 YIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
              H    N  +  I    L     + + ++  ++ 
Sbjct: 364 LFSHVGLLN-TWPAIFTAILPGALYLAVALVALRWA 398


>gi|194364315|ref|YP_002026925.1| permease YjgP/YjgQ family protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194347119|gb|ACF50242.1| permease YjgP/YjgQ family protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 360

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 122/356 (34%), Gaps = 14/356 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +L    G      
Sbjct: 1   MLKLDRYLLGDFVQSFLATLIVLLVVSVGGVLVDILGNIADGRLPAKLLFSQLGLQFIAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     +  + R++E+ +I   G     L++P+L L + +   +      
Sbjct: 61  LPLILPLALMLGLLLAVARLYRDSEMAVITAIGVGPKRLLRPLLMLVLPVVALVGACSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +Q+  +A  ++  + LE   F  L +   + +S  +P+ T  G   +  + 
Sbjct: 121 LGPWAGRVAEQMIIEANRSVLMAGLEPGRFTPLPNGGVVYLSSISPDGTRLGRVFLQRQK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAII---LNDGEVHRKSPISK-DISIMKFKSYTLQTESANSS 236
               ++  A  G +  +        L+DG           D  +  F    +       +
Sbjct: 181 DDRLEVVSAAGGRMFFEGARQRFLELDDGHQVEGPVAGGLDYRLATFARNDVALPDGAQT 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                      + L            +     +++ H+RL   L  + F L+++      
Sbjct: 241 RTENDPELMPTTKLF----------GDARPEAQAQLHRRLAPPLIALAFALLTVPLGRSS 290

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
              ++  ++    ++  +   + +  S  I   +                 +I++ 
Sbjct: 291 PRQQRYGRMMLALLAYMVGTNLMFIGSGWIATGKIPAALGLWWLTLPLLGLAIWMY 346


>gi|313668051|ref|YP_004048335.1| hypothetical protein NLA_7130 [Neisseria lactamica ST-640]
 gi|313005513|emb|CBN86949.1| conserved hypothetical integral membrane protein [Neisseria
           lactamica 020-06]
          Length = 392

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 144/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ I  + P
Sbjct: 23  IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWIIGMTP 82

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 83  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVM 142

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L      +Y   +    +  ++ +F+ +  
Sbjct: 143 PWAELRSREYAEILKQKQELSLVEAGRFNTLGKRNGRVYFVETFDTESGIMKNLFLREQD 202

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++A+ L DG  +  +P   D + + F+  +L   +     
Sbjct: 203 KNGNDNIIFAKEGNFSLNNNKRALELRDGYRYSGTPGKADYNRVSFRHLSLIISTTPKLI 262

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+                +++E   R++  +  ++     ++A    
Sbjct: 263 DPVSHRRTIPTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 309

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +   +   +L+ 
Sbjct: 310 YFNPRGGHTYNILIAIGLFLIYQNGLTLLFEAVENGKIHFWLGLLPMHIIMFAVALILLR 369

Query: 355 KKKYT 359
            +   
Sbjct: 370 VRSMP 374


>gi|160898976|ref|YP_001564558.1| permease YjgP/YjgQ family protein [Delftia acidovorans SPH-1]
 gi|160364560|gb|ABX36173.1| permease YjgP/YjgQ family protein [Delftia acidovorans SPH-1]
          Length = 369

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/370 (12%), Positives = 120/370 (32%), Gaps = 14/370 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVS---SSTESLNILLKISGYLI 57
           M+     + R I  +     L  + + +   ++  +  V     +   +   L      I
Sbjct: 1   MRVLRNLLYRDIIAAVGYVTLAFLALFFFFDLVDELRWVGRGGDNGYQITHALLFVVLRI 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P+ L  + P    + T  V+    +++E  I+  +G      ++ ++ L +   +  F +
Sbjct: 61  PSHLYELMPITVLIGTIYVMARFAQSSEFTIMRTSGMGPWLALRTLMVLGLGFVLATFGT 120

Query: 118 ENIIEPKCRST-IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + + P   +      +         +        + D  + I +           + I 
Sbjct: 121 GDYLAPAAENAGQNIRAIHLAQLSRGATGAWLKERQGDHSIAINVRAIRGPGDFSNVRIF 180

Query: 177 DSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS-----YTLQT 230
           D           +AQ+  +  D ++  L   E  R    +    ++  +      +    
Sbjct: 181 DFDGQGRISAQIHAQAAQVSEDGESWTLQGVEASRLKAKADAGMVLLREKEDSLVWKTGI 240

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            +   S  +LK +  +   L      +     +  + Y  EF +++   +  ++  ++++
Sbjct: 241 SAEMVSAALLKPDRMSTISLFQ-YVRHLEANGQAAQKYEIEFWRKVFYPMSCLVMVVLAL 299

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
             A                +   ISF +    F YI      +P+        L+ + S+
Sbjct: 300 PFAYLHFRSGGIAAYVFGGVMAGISFFLLNNVFGYIGTLQTWSPWLTAAAPGLLYSLLSL 359

Query: 350 --FLLMIKKK 357
             F  ++ ++
Sbjct: 360 TAFTWLVLRR 369


>gi|224825295|ref|ZP_03698400.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
 gi|224602216|gb|EEG08394.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
          Length = 366

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 124/358 (34%), Gaps = 16/358 (4%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           F+  + R +  + +   + ++ I    Q +  +   +    +   +  + G+    + P+
Sbjct: 3   FQKSLTRELTFTAVSVFVVLLAILVTTQTINLLGRAAEGRIANEAVAALIGFWTLGLFPL 62

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           +      +    VLT + R+ E+ +   +G S    +KPVL  A+ L+I + IS  +I P
Sbjct: 63  LLILTVFISVLVVLTRLWRDHEMAVWLASGVSLKDWVKPVLRFAVPLAILVGISSLLIGP 122

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                  + +   +     S +   +F        +   +           I     ++ 
Sbjct: 123 WAEQRSHEYAEILKQHEDVSAISPGIFKESHSSRRVYFVENFSGKNGSAANIFMQDMSKG 182

Query: 184 HK-IYYAQSGSIDLDRQAI---ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +A+SG I  + Q     +L +G  +  +P   D  + +F  Y++           
Sbjct: 183 KVASIFAKSGRIVTNEQGERLLLLENGRRYVGNPGEADYEVAEFARYSVVINDQPQFIPS 242

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             +     S  L  +    +         ++E   R++  +  V+  L++I         
Sbjct: 243 GNSRQTMTSAALALSDKAGD---------KAELGWRVSMPISTVVLALLAIPL---SYFN 290

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            +    + + ++L   F      +   + + Q+      +      +  + L M+  +
Sbjct: 291 PRSGHTYNLLLALLAYFVYQNALTLCRNWVLQDRLSAYAMLAPHMLMLLVALGMLAYR 348


>gi|34498370|ref|NP_902585.1| hypothetical protein CV_2915 [Chromobacterium violaceum ATCC 12472]
 gi|34104224|gb|AAQ60583.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 368

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 109/334 (32%), Gaps = 17/334 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           F+  + R +  + L   + ++ I    Q +  +   +    +   +  + G+      P+
Sbjct: 3   FQKSLTRELTLTALGVFVVLLAIIVSTQAINLLGRAAEGQIANEAVTALIGFWTLGFFPV 62

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           +      +    VLT   R+ E+++  + G S    + P++   + L+I +      + P
Sbjct: 63  LMILTVFVSVLVVLTRTWRDHEMVVWLSAGLSLRDWVWPIMRFTLPLAILIAGVTLFVGP 122

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD-TQ 182
                 +  +   +     S +   +F        +   +           I        
Sbjct: 123 WADQRSQDYAEIIKRREEISAISPGVFKESASSSKVYFIENYSGLHSAATNIFMQDMTDG 182

Query: 183 THKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST-I 238
                +A+ G I       + ++L DG+ +   P   D  I +FK YT     + + T  
Sbjct: 183 KVSTIFAKHGYISIKPDGERVLVLEDGKRYVGEPGQADYQIGEFKRYTASLGDSQAVTGP 242

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                    S LL                YR+E   RL+  +  ++     ++A      
Sbjct: 243 ASNRQSIPTSVLL---------AGSGNPEYRAELAWRLSMPISCILLA---LLALPLSYY 290

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
             +    + +  +L   F    G +   + + Q+
Sbjct: 291 NPRSGHTYNLLFALLAFFVYQNGLTLTRNWVGQD 324


>gi|241663806|ref|YP_002982166.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12D]
 gi|240865833|gb|ACS63494.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12D]
          Length = 372

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 118/363 (32%), Gaps = 18/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     L ++       +++ + + ++   + N +L + G      L 
Sbjct: 2   IFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEANPNDVLLLIGLATLGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++   +G S    I+PVL  ++   + + +      
Sbjct: 62  ILLCATLFISVLLVLTRWYKDSEMVVWFTSGISLTDFIRPVLRFSLPFILLVALLALFGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P           + +     S +    F       Y+   +   N       +  +   Q
Sbjct: 122 PWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDNGMKHARNVFVANAEQ 181

Query: 183 THKIYYAQS----GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                         ++    + I+L+ G  +  +P   D  I++F  Y ++  +      
Sbjct: 182 DKIGVAMAKTGEFKTMPNGDRFIVLDKGRRYEGTPGKLDYRIVEFDKYGVKVANKPPQAD 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                    +  L  NP   N           E   R+   L  + F LI+I  A    +
Sbjct: 242 ANLPTKSRSTKDLLANPTPENLG---------ELVWRIGLPLLALNFVLIAIPLAY---V 289

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIKK 356
             +  +  P+  ++ I        +     +   +   ++    + L       LL   +
Sbjct: 290 NPRLGRYTPMIFAVLIYLTYSNLLNLSQAWVSQGKMNVFMAWWPIHLAAFICAVLLFRFR 349

Query: 357 KYT 359
            Y+
Sbjct: 350 HYS 352


>gi|114326913|ref|YP_744070.1| permease [Granulibacter bethesdensis CGDNIH1]
 gi|114315087|gb|ABI61147.1| permease [Granulibacter bethesdensis CGDNIH1]
          Length = 404

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/365 (10%), Positives = 109/365 (29%), Gaps = 22/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y++R I R F+     +  +         ++   +       ++++    +   L 
Sbjct: 40  IIQTYLIREIMRPFVPVLAVLAGLFGSFSAAGFLSDAVNGLLPTGSIIQMVSLKVLIALE 99

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +N + E+  +         + + VL L + +++ +        
Sbjct: 100 VLIPISLYLSVLLAFGRLNSDQEITAMAALRVQPERIWRIVLSLCLAMAVVVGALSLFAR 159

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEE-NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           P   + +  LS +A ++L    +E    +     +  I  +             V     
Sbjct: 160 PWAYARLHALSDQAHVSLNTDAMEAGTFYIGPKGNRVIFFTHRQGPEEPASGVFVQLWSP 219

Query: 182 QTHKIYYAQSGSI-----DLDRQAIILNDGEVHRKS-PISKDISIMKFKSYTLQTESANS 235
              +I  A+            +  I+L+D  ++R +     +  ++      L  +   +
Sbjct: 220 DRMEIISARQAMTLRPASPDAKSQILLSDAHIYRFNRSGEGNDEVLDAAETVLDIQPNKA 279

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                 A       LL                  +E   R +  +  +   L+ ++    
Sbjct: 280 DAAAYSAVATASRLLL----------GSPSPADIAELQWRFSTPVSTL---LLGLLGIPM 326

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLM 353
                ++ +      ++   F  +   +     +     P    I ++       + +L+
Sbjct: 327 SRSKPRQSRYARFGAAILAYFSYYLLCTSARTWVQHGVVPAIPGIWWVPALLGVVLLILL 386

Query: 354 IKKKY 358
              ++
Sbjct: 387 YGPRW 391


>gi|59711021|ref|YP_203797.1| inner membrane protein [Vibrio fischeri ES114]
 gi|59479122|gb|AAW84909.1| conserved inner membrane protein [Vibrio fischeri ES114]
          Length = 344

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/335 (12%), Positives = 102/335 (30%), Gaps = 22/335 (6%)

Query: 28  WVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELL 87
              + +  +   S       ++L + G  +P +  ++ P    +        +   +E+ 
Sbjct: 1   MSQKFISVLADASDGDIPGGLILSLVGLNMPAMGLLMLPLSIFIGILLTFGRLYAESEIT 60

Query: 88  IIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS-YLE 146
           +++ TG     LI+  L+LA++       +   + P  +    QL    +         +
Sbjct: 61  VMNATGMGNSILIRAALYLALITGAAATFNSLWLSPWSQEKTTQLMETVESDAGVDLLQK 120

Query: 147 ENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD-------TQTHKIYYAQSGSIDLDRQ 199
                  D    + I   +  N  +   I  ++                     +   RQ
Sbjct: 121 GQFQRSPDGKAVVFIDDISNKNGKELRHIFLAQPVPHDSLRPSVLVADKGVVKELKDGRQ 180

Query: 200 AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPN 259
            + L DG  +   P   D     FKSY +              +      L+        
Sbjct: 181 VLELQDGTRYEGIPTRLDYLESNFKSYEVLIGQKEVKEKRRDWDAIPTLDLM-------- 232

Query: 260 YRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
                    ++E   R++     +   L+++V     A+  ++ +   +  ++ +    F
Sbjct: 233 --KRPELEAKAELQWRISL---IICIPLLTMVVVPLSAVNPRQGRFAKLGPAVLLYLAYF 287

Query: 320 WGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLM 353
              S     IE       I L+     +  + +++
Sbjct: 288 LSLSAGKSAIEDGGLAPSIGLWAINATLLLVGIVL 322


>gi|53803848|ref|YP_114530.1| hypothetical protein MCA2100 [Methylococcus capsulatus str. Bath]
 gi|53757609|gb|AAU91900.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 339

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/345 (12%), Positives = 106/345 (30%), Gaps = 21/345 (6%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           + I    + L  +        + + +  + G  +   L  + P    +    VL  M R+
Sbjct: 1   MTIVVSRKFLAILARAIEGEVATDTIFTLLGLKVVVTLASLLPASVFLSVLMVLGRMYRD 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E+ +    G   + + + +L  A  + +          P      ++L +K +      
Sbjct: 61  NEMTVFACAGVGPLRIYRSILLFAGPVCVLGAFLSLQAMPWSERLSQELISKDEKGADVR 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLD---RQA 200
            ++   F        +  ++    +         SR      I  A+SG ++++      
Sbjct: 121 GIKAGRFNEFSQGDVVLYAEQLNTDKTMSRVFAQSRRGDETGIVIAESGHMEINDAGDHF 180

Query: 201 IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNY 260
           ++LN+G  ++  P   D  + +F++Y ++      S             L     ++ + 
Sbjct: 181 VVLNNGRRYQGVPGRADFVLNEFQAYGVRINPPEGSQAA----------LKREAADSLHL 230

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV-- 318
                    +E  +RL   L      L+++  A       +      +  +  I      
Sbjct: 231 WMSGRPRELAELQRRLAVPLGTFTLTLLAVPIA---RTSPRGGVWGNLISAFLIYIIYEN 287

Query: 319 ---FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                       K+     Y  I  + L   S +       ++ +
Sbjct: 288 LQKISQGLLATGKLSVWTSYAGIYAVMLLATSVLLARNSGWRWVR 332


>gi|162146456|ref|YP_001600915.1| hypothetical protein GDI_0632 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209543541|ref|YP_002275770.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785031|emb|CAP54575.1| putative membrane protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531218|gb|ACI51155.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 363

 Score = 90.8 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 125/363 (34%), Gaps = 13/363 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+LR IG+         + +         ++   +   S N +L +    +   L 
Sbjct: 2   IIRNYLLREIGKPLAAMLGVCMALFASYSAADFLSEAVNGLLSTNTILALVTLKLLIGLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L ++  N+E+  +     +   +++ V+ LA  ++I + +    + 
Sbjct: 62  VLVPVSLYLSIVLALGALYGNSEITALHALRVTPGMILRHVMTLAAGVAIVVGLLSLFVR 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEE-NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           P     +  LS  AQL+L    ++    +   +    I +++     T      V  R  
Sbjct: 122 PWAYHQLHNLSKSAQLSLDVDAMQAGTFYVVQNGARVIFLTEREGPGTPARDIFVQVRRA 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +T +I +A+ G    D                 +  +  +  +      +      I   
Sbjct: 182 KTTQIIHAELGYPMTDEGKQ-----SDVYVRLKNAHVYDIGRQPGVSD-KVLTVREITQD 235

Query: 242 ANDQNLSFLLNPNPNNPNYR--PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            N  +   L   +   P+ +          +EF  RL+  +  ++  ++++  A      
Sbjct: 236 PNRHSTEPLGYSSIAAPSLQLAASHAPADVAEFQWRLSTPITTMLLAMLAVPLA---RGR 292

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKI-EQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            ++ +   +  ++ I F  +  ++     +       +P ++     ++ +   M++ + 
Sbjct: 293 PRQNRYGKLGAAILIFFVYYLLYTSARTWVQHGMVAAMPGIWWAPALLAVLTGFMLRDQI 352

Query: 359 TKI 361
             +
Sbjct: 353 PAL 355


>gi|330813916|ref|YP_004358155.1| putative permease YjgP/YjgQ family protein [Candidatus Pelagibacter
           sp. IMCC9063]
 gi|327487011|gb|AEA81416.1| putative permease YjgP/YjgQ family protein [Candidatus Pelagibacter
           sp. IMCC9063]
          Length = 358

 Score = 90.8 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 139/355 (39%), Gaps = 9/355 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y +  I RS+      + F+ W+ Q  + + L++    S+++ +    Y +P ++
Sbjct: 4   NKLNNYFIAEILRSYAFVLATLSFLIWIAQSARFLYLITDMGLSMSVYVPYILYQLPKIV 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             +    F +     +     N E+ I   +G S+ T++  +L ++++ +   F     +
Sbjct: 64  SQMMLISFLISLFISIIKFQNNKEMEIYWLSGVSKKTIVWTILKISLVPTFVAFFLYIYL 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      + + A ++     + +++N F     +L + + + +    L+ +++    + 
Sbjct: 124 APMTGLISRNILANSEFTFVNALVKKNNFNSPFRNLTVYVGENDNRGNLEKVYLF---EN 180

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
               I          ++  + L DG +H+K+   K   I   ++    T+  ++ T   K
Sbjct: 181 NKTIIAKQGKVLNVDNKNYLQLIDGFIHQKNKNGKIQIIKFEETLYDFTKYKSNLTTYPK 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             +++L +L N   NN   +   +     E HKR+ + LF  I  L+            +
Sbjct: 241 LQERSLLWLFNELKNNRKEKNNTI----FEIHKRIFKPLFIPIIALLCCFILYGN--NEK 294

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              +   F   S+S      F  +I     N ++   LY F  C+  I    + K
Sbjct: 295 FNLVKLRFSIFSLSVLFIIFFEILISLSSSNIFFQYFLYSFPMCVGIIIYFFLHK 349


>gi|146340303|ref|YP_001205351.1| putative permease [Bradyrhizobium sp. ORS278]
 gi|146193109|emb|CAL77120.1| putative permease [Bradyrhizobium sp. ORS278]
          Length = 365

 Score = 90.8 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 106/354 (29%), Gaps = 15/354 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y       S +     I  +  ++  ++ +   S  ++ S  ++ + S + +P +
Sbjct: 6   NTLGRYFAGRFLVSAVGVFASIFLLLVLVDYIEMVRRTSGLASASALMVAETSLFRVPQL 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + PFC  +       +++R  EL++    G S    I P L  AI+L +      N 
Sbjct: 66  LEKMMPFCVLIGAMTCYLALSRRLELVVARAAGVSAWQFIAPALASAIVLGLMATTLYNP 125

Query: 121 IEPKCRSTIKQLSAKAQLALT------FSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           +    R   K++ A+   +         S    N        +            L G+ 
Sbjct: 126 MSANLRELSKRMEAELFGSAPGGGVQDASGFWLNQLNPDGSVIINAARSEQQGVRLTGLT 185

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +         K       +   D Q +      V R S  +  +    F   T     A 
Sbjct: 186 LFRFDTKNRFKDRIEAREASLEDGQWVF---KSVRRFSLDAPPVDEPTFILPT-TLTPAQ 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                      +   L +    +          YR ++HK + Q        +++   + 
Sbjct: 242 VRNSFSTPETVSFWQLPS-YIRSSESSGFATAGYRLQYHKLIAQPFLLAAMVMLAASVSL 300

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
                R       +   +   F ++   S +   + +     PI   +L     
Sbjct: 301 --RFFRMGGVQKMVLSGVGAGFLLY-VLSKVTEDLSKAALMDPIAAAWLPVFVG 351


>gi|42526554|ref|NP_971652.1| hypothetical protein TDE1044 [Treponema denticola ATCC 35405]
 gi|41816747|gb|AAS11533.1| membrane protein, putative [Treponema denticola ATCC 35405]
          Length = 357

 Score = 90.8 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 112/356 (31%), Gaps = 2/356 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+L+    +F+++ LF + +  +  +   I     +      ++K+    IP  
Sbjct: 1   MKLLQRYLLKLFIPTFVVAMLFFILLLQLGDLFANIVAYLQNGAQFKDIVKVMWLYIPKC 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P       +  + ++    EL  I + G S      P+L L    S+ +   E+ 
Sbjct: 61  IAYSVPLAILFAGSYTMGNLYAQNELTSIFSAGISLGRFTLPLLVLGFFFSVGMIFFEDN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +  K      QLS K          ++ +       +      +N  N       +  RD
Sbjct: 121 VVIKYFYEKTQLSKKLLQEEESLDTQDLVILSELGKIVYTADYFNAENQTLANAYIIVRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
              +     +S  +  +      +  EV+R    +    +       + +E   +    L
Sbjct: 181 EDGNLSLVIKSSHMVWNEDRWTTDSAEVYRFDEKNSVSCLNNIPDNIILSEPPANFQKNL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            + D+                        S++H+R +      I    SI         +
Sbjct: 241 SSVDEMRISEAKEFIAALKKNGLPYYEALSKYHRRFSFPFTIFIVLFFSISLG--GKFKK 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               +  +F     +         ++    +    +   +  +F  S + + ++KK
Sbjct: 299 NILLMSILFSLGIATLFYVTEMVTMLSAKWEYISPLAGAWTPIFIFSILSIFLLKK 354


>gi|83594405|ref|YP_428157.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
 gi|83577319|gb|ABC23870.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
          Length = 366

 Score = 90.8 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 115/354 (32%), Gaps = 15/354 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           ++   YI R    + + + L +  +  +  +++      S    ++++L+++ Y +P  L
Sbjct: 5   RTLTTYIARTYLTALVGATLVVGALLMLFDVIEITRRSGSKAIGIDVVLEMALYHLPMSL 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF F      +   + R++EL++I   G S    + PV+ + ++L I      N +
Sbjct: 65  QSALPFVFMGGAVMIFWKLARSSELVVIRAAGLSVWQFLAPVIAVVVVLGIANVTLLNPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFS--------YLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
                +  +++ A     +           +L EN            + + +    + G+
Sbjct: 125 AAHLYTKYERMDAGMDSGVANPLALSDGGLWLRENNPEGQVVMHAQGVRQVDNALRMTGV 184

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
            I      +  +       +   +   ++ +    +            +           
Sbjct: 185 TIFRYGPDRRFESRIDAETAGLREGALVLTSVVTTYPGRVG----ERAETLEVPSNLTLP 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                       +   L                 +R  +H  +   L  +   L+  V +
Sbjct: 241 KIQDSFSPPETVSFWEL-PAFITFFEAAGFSAHAHRLHWHSLIASPLLLIAMVLMGAVFS 299

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
            K +  R    +  I  +++  FGVF+ FS I + +  +      L  +   + 
Sbjct: 300 LKPSQ-RSVNWLFRIVGAVAAGFGVFF-FSKITYTLGLSQTLPVNLAAWSPALV 351


>gi|225619415|ref|YP_002720641.1| Permease [Brachyspira hyodysenteriae WA1]
 gi|225214234|gb|ACN82968.1| Permease [Brachyspira hyodysenteriae WA1]
          Length = 356

 Score = 90.8 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 109/357 (30%), Gaps = 4/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L+     F  S L  V +  +  +  R++  +   E +N  +       P  
Sbjct: 1   MKKLNAYLLKEFLSFFFGSLLLFVVLVTIADLSSRLSFYTEHPELINYFITYHLARAPHN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P      +T VL +  +N E+L I+N+G S      P+  + I L +FL      
Sbjct: 61  TYYIFPVALMFSSTYVLGTFVKNKEMLAIENSGISLFKFSMPMFIIVIGLCLFLVFFWEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +           +   +     S       F  ++ LY   + +     +Q   IV   D
Sbjct: 121 VAAPLNKVSFAANDAMRGREQVSKSGPWQLFGGNNHLYFIETYFYKEQYMQNTIIVKLDD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +   +       +          +      +K+I + K  +Y L            
Sbjct: 181 DGGIQFRVSSPHIQWNNEDRKWYVMDGILTTFSENKEIKVEKVNNYPLDLLERPEHFYGR 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D       +                 ++ H R++      I  L++ + +       
Sbjct: 241 PPLDAMSLSEESHIIKLQKEVNMNTSKLETDLHYRISYCFSGFIIVLLASLFSKFSTQS- 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
               +    + + I   +++    +   + +       +  ++  I    L ++  K
Sbjct: 300 ---VLVVSLVMVIIVALLYYSILMVFRSMGEAGDINAFIAAWMPNIIFAILCILAFK 353


>gi|56479504|ref|YP_161093.1| hypothetical protein ebA7173 [Aromatoleum aromaticum EbN1]
 gi|56315547|emb|CAI10192.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 359

 Score = 90.8 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/362 (11%), Positives = 121/362 (33%), Gaps = 18/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F   + R   +S     + +  I   + +++ +   +      + +L + G+   + LP
Sbjct: 2   IFSRALQREFFQSAAGVFVALFAILITVVLIRLLGQAAGGRLPSDAVLALIGFGSLSRLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V      +     L+   R++E+++   +G      I+PVL  A+ + + +      + 
Sbjct: 62  IVLSLTVFIAVLLSLSRSYRDSEMVVWFASGLPLTAFIRPVLRFALPIVLTIAAVTLFVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           P  +    +  A+       S +   +F           +      +       V +   
Sbjct: 122 PWAQLKSAEYQARIDSRNDASRIAPGVFRESVGAQRVFFVETGAGEDGKVRNVFVSTEKD 181

Query: 182 QTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
               +  +  GS+  D    + ++L  G  +   P S +  +++F  Y++  E   ++  
Sbjct: 182 GRLDVIVSAEGSLRTDAEGDRFVVLEKGRRYEGEPGSPEYRVLEFDRYSVLVEEREAAGP 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             + +      LL           +       E   R+   +  ++     ++A     +
Sbjct: 242 ASRTSTTPTLELL----------ADPTPRKLGELLGRIGMPVAALLLA---LMAIPLSFV 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLMIKKK 357
             +  + + +  ++          S     + Q    +   ++L    + ++  LM  ++
Sbjct: 289 NPRAGRANNLLFAILTYLVYSNAISVFQAWVSQGRLRFELAVWLPHVVVLAVLALMFYRR 348

Query: 358 YT 359
             
Sbjct: 349 LA 350


>gi|94311741|ref|YP_584951.1| permease YjgP/YjgQ [Cupriavidus metallidurans CH34]
 gi|93355593|gb|ABF09682.1| predicted permease [Cupriavidus metallidurans CH34]
          Length = 387

 Score = 90.8 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/385 (13%), Positives = 118/385 (30%), Gaps = 32/385 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +  +E Y  R I   F      ++ +     +L  +  V     SL           PT 
Sbjct: 4   LSVYERYFARLIYGVFAFILFAVLALFVFFDMLSELESVQGKYTSLIAFFH-VMLEAPTR 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + +   +E  I    G +    +  +  LA+ L++  FI    
Sbjct: 63  IYEVLPIAVLISAIYVFSQLASQSEYTIFRVAGLNTRQALFSLFKLAVPLALATFIFGEF 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----------LYIKISKYNPNNT 169
           I P      +++  +A  A   S     ++ +  D             ++ +    P+ +
Sbjct: 123 IGPAAEQYAQKIKLEAIGATVSSGFRSGVWVKDRDREPEEKGAGEITRFVNVQGLRPDQS 182

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP--------------IS 215
           + G+ I +       ++            Q+  LND    R                   
Sbjct: 183 ITGVTIYEFDKDYRLRVIRVAKEGKYQGGQSWQLNDVNETRFIELRDGQPAANRDALAPD 242

Query: 216 KDISIMKFKS--YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFH 273
                ++F +     +      S ++++  + +   L      +     +  + Y   F 
Sbjct: 243 FRGEQVQFPNILMHSELTPQILSVLLVQPENMSTVNLFR-YIRHLRDNKQDTQRYEIAFW 301

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
           K++   L   +   +++  A   A            I L +SF +       +  +    
Sbjct: 302 KKVVYPLTLFVMVALALPFAYLHARAGAVGVKVFGGIMLGLSFHLSNTLFSHVGLLH--- 358

Query: 334 YYIPILYLFLFCISSIFLLMIKKKY 358
            + PI+   +     + + +   ++
Sbjct: 359 TWPPIVSALVPGTLYLMIALGALRW 383


>gi|197336301|ref|YP_002155170.1| permease YjgP/YjgQ family protein [Vibrio fischeri MJ11]
 gi|197317791|gb|ACH67238.1| permease YjgP/YjgQ family protein [Vibrio fischeri MJ11]
          Length = 344

 Score = 90.8 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/335 (12%), Positives = 102/335 (30%), Gaps = 22/335 (6%)

Query: 28  WVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELL 87
              + +  +   S       ++L + G  +P +  ++ P    +        +   +E+ 
Sbjct: 1   MSQKFISVLADASDGDIPGGLILSLVGLNMPAMGLLMLPLSIFIGILLTFGRLYAESEIT 60

Query: 88  IIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS-YLE 146
           +++ TG     LI+  L+LA++       +   + P  +    QL    +         +
Sbjct: 61  VMNATGMGNSILIRAALYLALITGAAATFNSLWLSPWSQEKTTQLMETVESDAGVDLLQK 120

Query: 147 ENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD-------TQTHKIYYAQSGSIDLDRQ 199
                  D    + I   +  N  +   I  ++                     +   RQ
Sbjct: 121 GQFQRSPDGKAVVFIDDISNKNGKELRHIFLAQPVPHDSLRPSVLVADKGVVKELKDGRQ 180

Query: 200 AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPN 259
            + L DG  +   P   D     FKSY +              +      L+        
Sbjct: 181 VLELQDGTRYEGIPTRLDYLESNFKSYEVLIGQKEVKEKRRDWDAIPTLDLM-------- 232

Query: 260 YRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
                    ++E   R++     +   L+++V     A+  ++ +   +  ++ +    F
Sbjct: 233 --KRPELEAKAELQWRISL---IICIPLLTMVVVPLSAVNPRQGRFAKLGPAVLLYLAYF 287

Query: 320 WGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLM 353
              S     IE       I L+     +  + +++
Sbjct: 288 LSLSAGKSAIEDGGLAPSIGLWAINATLLLVGIIL 322


>gi|325285312|ref|YP_004261102.1| permease YjgP/YjgQ family protein [Cellulophaga lytica DSM 7489]
 gi|324320766|gb|ADY28231.1| permease YjgP/YjgQ family protein [Cellulophaga lytica DSM 7489]
          Length = 341

 Score = 90.8 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 123/344 (35%), Gaps = 8/344 (2%)

Query: 19  SCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLT 78
             L  V I  ++ + ++I  +  +      +L+     I  +  ++ P    +      +
Sbjct: 1   MLLLFVPIGVMLDLAEKIAKMVRNEAPTLEILEYYMNFIIYIGSLLFPIFLFLSIIFFTS 60

Query: 79  SMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQL 138
            +  NTE++ I ++G S    ++P    A +++I +F+    I PK      +   K   
Sbjct: 61  KLASNTEIVAILSSGVSFGRFLRPYFMGATIIAILMFVMAMFIVPKASLDYHEFIFKYLK 120

Query: 139 ALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI--VDSRDTQTHKIYYAQSGSIDL 196
                    N++ +L+++ ++ IS ++PN  L   F+      D +      A S     
Sbjct: 121 KGKKFQETTNIYNQLNENEFLYISSFDPNRQLGSNFVLEHFDNDDKLAYKLTASSIRWIP 180

Query: 197 DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPN 256
                 L            + I            +  + + +   A  +N+  L     +
Sbjct: 181 KDTIYRLTGFTSRTVKGNVEVIEKKSRLDTIFDFKIDDLTPVSYVAETKNIFELNKFIED 240

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
                   + TY    +KR    +   I  LI++      ++ R+      +   + I+F
Sbjct: 241 QRKKGASNINTYVMAKYKRWALPVSAFILTLIAVSV---SSIKRRGGMGLNLAFGIVIAF 297

Query: 317 GVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              +    F+ +  K   +P    I+   +F I  ++LL   K+
Sbjct: 298 VYIFFDRVFAILAEKAGLSPLIAIIIPNAIFAIIGLYLLKNAKR 341


>gi|320537761|ref|ZP_08037684.1| hypothetical protein HMPREF9554_02438 [Treponema phagedenis F0421]
 gi|320145384|gb|EFW37077.1| hypothetical protein HMPREF9554_02438 [Treponema phagedenis F0421]
          Length = 356

 Score = 90.8 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 113/356 (31%), Gaps = 1/356 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+L+    + L++ LF + +  +  +   +    ++   L  +L++  +  P  
Sbjct: 1   MKILQRYLLQIFFPTALVAILFFILLLEIGDLFANLPTYLTNGVGLAPILQVMYFYFPKC 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P          + ++    EL  +  +G    TL+ P++ L  + S+ +F  E+ 
Sbjct: 61  ISFAMPLGVLFAGAYTMGTLYARNELTSVFASGMPIWTLVLPLVILGFIFSVGMFFFEDR 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    +L+AK           + +    ++ +      Y+          +  R 
Sbjct: 121 VVIHTQYKKNRLTAKLLETDKDLSTNDIVVLSENNKIIYSAEVYDAETKNLLNLQIIVRT 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                     +     +  A  L    V+  S   +     K  +        N    + 
Sbjct: 181 DDGEIEKVVTTAVAIWEGDAWELTKPAVYIFSKNGQIQFTDKLAAKEFTEAPENFQRNIT 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             ++ ++S                     +++++R +      +    S+    +     
Sbjct: 241 SIDELSVSE-AATYIQKLKRTGRPYTEELAQYYRRFSFPFTIFLVLFFSVSVGGRFRKNI 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               +    +  ++ +        +      +P    +L   +F   SIFLL   K
Sbjct: 300 LLMSLLFSLLIATVYYVTEMVTMLLAKWEYISPLAGALLPFLIFTSLSIFLLRHAK 355


>gi|218885480|ref|YP_002434801.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756434|gb|ACL07333.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 379

 Score = 90.8 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 104/340 (30%), Gaps = 9/340 (2%)

Query: 27  AWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTEL 86
             + + LQ   L       L   + +  YL P  + +V P    +        M+ + EL
Sbjct: 16  VLIGRGLQLRELFLGLDLGLADAVLLFVYLTPFFMLLVVPVACMLSVFLTFLRMSTDREL 75

Query: 87  LIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLE 146
           + +   G S   ++   L   +L ++              +  +        +     ++
Sbjct: 76  VALKAGGVSLYQMLAAPLLFCVLCTLLTLGISLQGLAWGMANFRATVMDIANSRARVVVQ 135

Query: 147 ENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR-DTQTHKIYYAQSGSIDLDRQAI--IL 203
             +F +    L +   + +P +      IV+ R    +     A +G+I  D      + 
Sbjct: 136 PGVFNKDIPGLTLFARQVDPADNRLSQVIVEDRSREDSTLTILAPTGAIATDEARGELLF 195

Query: 204 NDGEVHRKSPISKDISIMKFKSY----TLQTESANSSTIVLKANDQNLSFLLNPNPNNPN 259
                       + +S++ F  Y     L           +K  + +   L     ++  
Sbjct: 196 RLQNGRLYKTEGQQVSVLGFGEYVVRIDLGLMFKGLDLGRVKPKELSWEQLRALPLDDGK 255

Query: 260 YR--PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG 317
                +LL     E HKR       ++ GL ++  A     + ++  +    +   + + 
Sbjct: 256 GNVDDKLLRKVAVEVHKRWVFPAACLVLGLFAMPLACAFEGLHRQFGVVLALLMFLVYYS 315

Query: 318 VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +              P         LF  + ++ L +  +
Sbjct: 316 LLSFGLTTGEAGTIAPEVGLWTPNVLFLGAGLWGLRLAAR 355


>gi|319788014|ref|YP_004147489.1| permease YjgP/YjgQ family protein [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466526|gb|ADV28258.1| permease YjgP/YjgQ family protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 361

 Score = 90.4 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 128/364 (35%), Gaps = 15/364 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+LR   +SFL + + ++ ++    ++  +  ++       +LL   G  +   
Sbjct: 1   MPKLDRYLLRDFVQSFLATLIVLLTVSLGGVLVDVLGEIADGGLPARLLLSQLGLQLLVY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP+V P    +     +  + R++E+ +++  G     L++P+L   + + + + +    
Sbjct: 61  LPLVLPLALMLGLMLAVARLYRDSEMAVLNAVGVGPKRLLRPLLMAVVPVVVAVGMCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFR-LDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P  + T   +  +A  +L  + LE   F    +    + I   + +        +   
Sbjct: 121 LGPWAQRTAANMIEQANRSLIVAGLEPGRFTSLPNGGGIVYIDGMSEDGRTLQGVFLQRE 180

Query: 180 DTQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANS 235
                 +  A++GS++      + + L DG           D  +M++    +       
Sbjct: 181 RDGRVDVVTARTGSLEFGGDRDRFLRLADGRRLEGPLEQGLDFRLMRYAVNEVALPDRAE 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                         L N          +      +E H RLT  L  + F L+++  A  
Sbjct: 241 ERADDDPAIAPTLSLFN----------DGRPAAIAELHGRLTPPLMALAFALLTVPLARS 290

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               ++  ++   F++  +   + +    ++   +                 +I+L +  
Sbjct: 291 SPRQQRYGRLMLGFLAYLVGLNLMFIGVRMLADGKLPAPVGLWWLTLPLMALAIWLYLRD 350

Query: 356 KKYT 359
            +  
Sbjct: 351 GRLP 354


>gi|325473492|gb|EGC76687.1| membrane protein [Treponema denticola F0402]
          Length = 357

 Score = 90.4 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 112/356 (31%), Gaps = 2/356 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+L+    +F+++ LF V +  +  +   I     +      ++K+    IP  
Sbjct: 1   MRLLQRYLLKLFIPTFVVAMLFFVLLLQLGDLFANIVAYLQNGAQFKDIVKVMWLYIPKC 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P       +  + ++    EL  I + G S      P+L L    S+ +   E+ 
Sbjct: 61  IAYSVPLAILFAGSYTMGNLYAQNELTSIFSAGISLGRFTLPLLVLGFFFSVGMIFFEDN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +  K      QLS K          ++ +       +      +N  N       +  RD
Sbjct: 121 VVIKYFYEKTQLSKKLLQEEESLDTQDLVILSELGKIVYTADYFNAENQTLANAYIIVRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
              +     +S  +  +      +  EV+R    +    +       + +E   +    L
Sbjct: 181 EDGNLSLVIKSSHMVWNEDRWTTDSAEVYRFDEKNSVSCLNNIPDNIILSEPPANFQKNL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            + D+                        S++H+R +      I    SI         +
Sbjct: 241 SSVDEMRISEAKEFIAALKKNGLPYYEALSKYHRRFSFPFTIFIVLFFSISLG--GKFKK 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               +  +F     +         ++    +    +   +  +F  S + + ++KK
Sbjct: 299 NILLMSILFSLGIATLFYVTEMVTMLSAKWEYISPLAGAWTPIFIFSILSVYLLKK 354


>gi|260434859|ref|ZP_05788829.1| unclassified ABC-type transport system permease [Synechococcus sp.
           WH 8109]
 gi|260412733|gb|EEX06029.1| unclassified ABC-type transport system permease [Synechococcus sp.
           WH 8109]
          Length = 387

 Score = 90.4 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 108/331 (32%), Gaps = 20/331 (6%)

Query: 32  ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           + + +  +      + I  ++    IP  L    P    M +  V T ++ N EL  + +
Sbjct: 46  MFELVRQMVDKNLPITIAAQVLFLSIPRWLAFSVPIGTLMASLFVFTRLSANNELTALRS 105

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
            G +   +I   + L++ +++F F   +++ P+     +    +       +   E++ +
Sbjct: 106 LGITTKRMISAAIALSMAMTLFSFFLNDVVVPRSERYAEVNLKRGLGQAIANKTGEDIIY 165

Query: 152 RLDDDLYI-------------KISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDR 198
                                  S    +  ++ + ++D   +   ++  A     + D+
Sbjct: 166 PRFGRRTGIDGKSADRGLLQLFYSWKFQDGEMKDVTVLDFSRSGITQLLRADRAIWNDDQ 225

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST--IVLKANDQNLSFLLNPNPN 256
                 DG +   +  +   +   FK Y    +SA      I   A +  ++  L     
Sbjct: 226 TGWDFLDGHILTLTA-NGSSTKADFKRYLYPLDSAPQRLAGIEEDAVNMTVAEALQAQRL 284

Query: 257 NPNYRP-ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSIS 315
                  +     R    ++ T  +  ++FGL       +      R     + + +   
Sbjct: 285 YEESGSIKEARKIRVRIQEKFTVPMACLVFGLFGATLGAQPTYRTSRSFSFVLTLGI--- 341

Query: 316 FGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
             +++   +    +       PIL  +L  +
Sbjct: 342 IAIYYVIGFSFSSLGVKGTLSPILAAWLPVV 372


>gi|222085452|ref|YP_002543982.1| permease protein [Agrobacterium radiobacter K84]
 gi|221722900|gb|ACM26056.1| permease protein [Agrobacterium radiobacter K84]
          Length = 361

 Score = 90.4 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 117/354 (33%), Gaps = 11/354 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y       + L   L +  + ++I   +    ++     ++ I L ++   +P +
Sbjct: 4   STLGRYFFTRYIITTLWFFLGVTSLVYLIDFSETAGRLAGLPGYTVKIGLLMTAVRLPFI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF        VL ++NR  EL+I    G S    + P +  A  + +   ++ N 
Sbjct: 64  MQQTVPFIALFVGMTVLIALNRRRELVIARAAGISVWQFMTPFVVGAFCVGLLTMLALNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD---DLYIKISKYNPNNTLQGIFIVD 177
           +    +   + + A  +   ++       + R  D   D+ I       N T     +  
Sbjct: 124 VAAWGQRQAETMEADLRGDPSYRNTLSIPWLRQSDGKSDIIIGAKAVLDNGTTLMNVVFI 183

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D+Q + I    + S  L+    +LN           +  +           +    S 
Sbjct: 184 HFDSQGNIILRQDAQSAKLENGYWLLNSVVER---APGEIPAHKSTTQVRTNLKQDFVSE 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            + +        L N             +   ++FH  L+Q    V   LI+   + K +
Sbjct: 241 RLAQPETIAFYDLSNR-IAIAKSFGISTKALETQFHSLLSQPFLLVAMTLIAATVSLKFS 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              Q +    + +   +S  V +  + ++     +    P +  ++  I ++  
Sbjct: 300 RFNQSR---SVILGGILSGFVLYVVTVLVKAFGSSGVVPPFVATWIPVIVALAF 350


>gi|152973138|ref|YP_001338284.1| putative transmembrane protein, transport [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238892750|ref|YP_002917484.1| putative transport system transmembrane component [Klebsiella
           pneumoniae NTUH-K2044]
 gi|262045294|ref|ZP_06018319.1| inner membrane protein YjgP [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|290512174|ref|ZP_06551541.1| transmembrane protein yjgP [Klebsiella sp. 1_1_55]
 gi|330016471|ref|ZP_08308444.1| lipopolysaccharide export system permease protein LptF [Klebsiella
           sp. MS 92-3]
 gi|150957987|gb|ABR80017.1| putative transmembrane protein, transport [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545066|dbj|BAH61417.1| putative transport system transmembrane component [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259037350|gb|EEW38596.1| inner membrane protein YjgP [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|289775169|gb|EFD83170.1| transmembrane protein yjgP [Klebsiella sp. 1_1_55]
 gi|328528832|gb|EGF55775.1| lipopolysaccharide export system permease protein LptF [Klebsiella
           sp. MS 92-3]
          Length = 365

 Score = 90.4 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 124/361 (34%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  IP +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGIPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  LIK  + LA+       ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLIKAAMILALFTGAVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  D   +   +    N    +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQASDGNAVMFIESVNGNRFHDVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +   +   Q + LN G     + + +D  I  F +Y         S 
Sbjct: 182 NARPSVVVADSGELSQQKDGSQVVTLNKGTRFEGTAMLRDFRITDFNNYQAIIGHQAVSA 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   ++  L               +  R+E H R T      I  L+         
Sbjct: 242 DPDDTEQMDMRTLW----------KTHTDRARAELHWRFTLVATVFIMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + I     +     P ++++   +    L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLVFFLLQTSIKSNGGK-GKMDPAIWMWAINLLYFALAVLLNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|52842836|ref|YP_096635.1| permease [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629947|gb|AAU28688.1| permease [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 333

 Score = 90.4 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 111/344 (32%), Gaps = 22/344 (6%)

Query: 28  WVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELL 87
              Q +Q +N  +S +    +++K+    +P ++ ++ P  F +        +   +E+ 
Sbjct: 1   MSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMGLLLPLGFYVALLLAYGRLYAESEMT 60

Query: 88  IIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEE 147
           ++   G     L+K    +A ++ + + I      P       +L     +      +  
Sbjct: 61  VLRACGYGPRQLLKHSFAMATVVLVVVAIVMIWASPVIAVERIKLIRSTGIKTLIQTIMP 120

Query: 148 NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYY---------AQSGSIDLDR 198
             F  ++    I   +    +  Q   I  ++ +                    +     
Sbjct: 121 GRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHSVQDNRLLWDVLWADKAFAEVNPQTGE 180

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNP 258
           + I+L +G+ ++  P   D  I +F SY  +  +     +   A       L   N ++ 
Sbjct: 181 EYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPNPTV-VMHDDARTAKTRDLWPLNNHDL 239

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
                      +E   R++  L  +   L+++       +  +  K   +  ++ I    
Sbjct: 240 KKA--------AELQWRISIPLMVLTLTLVAVPL---SRVSPRSGKYSKLLPAIIIYIFY 288

Query: 319 FWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLMIKKKYTKI 361
                     I      +   ++     ++ + +L I +   K+
Sbjct: 289 ANFMFVSRDAIATGKIPWWIGMWWVHVAVAILGILFIWRNQVKL 332


>gi|73542370|ref|YP_296890.1| permease YjgP/YjgQ [Ralstonia eutropha JMP134]
 gi|72119783|gb|AAZ62046.1| permease YjgP/YjgQ [Ralstonia eutropha JMP134]
          Length = 383

 Score = 90.4 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 122/361 (33%), Gaps = 23/361 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++ +E Y  R +   F+     ++ +     +L  +  V +   +  I         PT 
Sbjct: 4   LRVYERYFARQVYGVFVFILFAVLSLFVFFDLLSELENV-NGKYTSLIAFVHVLLQAPTR 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + +   +E  I    G +    +  +  LA+ L++  FI    
Sbjct: 63  IYEVLPIAVLISAIYVFSQLASQSEYTIFRVAGLNTRQALFSLFKLAVPLALITFIFGEF 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD--------LYIKISKYNPNNTLQG 172
           I P+     +++  +A  A   S     ++ +  D          ++ ++   P+ T+ G
Sbjct: 123 IGPRAEQFAQKIKLEAIGATVSSGFRSGVWVKDRDKDPAGGEITRFVNVAGLRPDQTITG 182

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP-------------ISKDIS 219
           I + +       ++            Q+ +L+D    R S                    
Sbjct: 183 ITVYEFDAQYRLRVIRVVKEGRYQGAQSWLLSDVNETRFSELRQPGTASRDGLAPEFRAE 242

Query: 220 IMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
            ++F S T+ +E +    +++L   ++  +  L     +     +  + Y   F K++  
Sbjct: 243 QVRFPSVTMHSELTPQILSVLLVTPERMSTLDLFRYIRHLRDNKQDTQRYEIAFWKKVVY 302

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
            L   +   +++  A   A            I L +SF +       +  +   P  +  
Sbjct: 303 PLTLFVMMALALPFAYLHARAGAVGVKVFGGIMLGLSFHLSNTLFSHVGLLHTWPPIVSA 362

Query: 339 L 339
           L
Sbjct: 363 L 363


>gi|288937433|ref|YP_003441492.1| permease YjgP/YjgQ family protein [Klebsiella variicola At-22]
 gi|288892142|gb|ADC60460.1| permease YjgP/YjgQ family protein [Klebsiella variicola At-22]
          Length = 365

 Score = 90.4 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 125/361 (34%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  IP +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGIPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  LIK  + LA+       ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLIKAAMILALFTGAVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  D   +   +    N    +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQASDGNAVMFIESVNGNRFHDVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +   +   Q + LN G     + + +D  I  F +Y         ++
Sbjct: 182 NARPSVVVADSGELSQQKDGSQVVTLNKGTRFEGTAMLRDFRITDFNNYQAIIGHQAVTS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   ++  L               +  R+E H R T      I  L+         
Sbjct: 242 DPDDTEQMDMRTLWQT----------HTDRARAELHWRFTLVATVFIMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + I     +     P ++++   +    L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLVFFLLQTSIKSNGGK-GKMDPAIWMWAINLLYFALAVLLNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|300023218|ref|YP_003755829.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525039|gb|ADJ23508.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 364

 Score = 90.4 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 119/359 (33%), Gaps = 10/359 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPTVL 61
           +   YI R    + + +      + ++I  ++ + +           LL+I+   +P  +
Sbjct: 6   TLTRYIARMFIVAIVTTLTVCALLIFMIDFVELLRMAGKYGAVPGTTLLRIALLRLPAYI 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             +  F   + + + L  +NR +EL ++   G S    + P LF+ + + IF     N +
Sbjct: 66  EFLIGFAVLVGSISALIYLNRKSELAVMRAGGMSVWQFLGPGLFVGLAVGIFAMAVFNPL 125

Query: 122 EPKCRS-----TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
             + R+       K    +A L               D +  +  +  +         +V
Sbjct: 126 ASRGRATSEKLYAKAFGNEANLLRAQGGGSWIRQNGADGESVLGAAAASNQGLTLTGVLV 185

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            + D + H      +GS +L      L D  V R     +        +Y       ++ 
Sbjct: 186 FAYDREGHFSERIDAGSAELKDGYWELQDAWVTRLGQEPEKFKSYLLSTYLTPDRVQDAL 245

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V   +  +L  L+       +      E  R ++   L + +  +   L++   + + 
Sbjct: 246 GTVFSISFWDLPELIQA----ADKAKLSTERLRVQYQSLLVRPMLCLAMVLLAATVSLRS 301

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                 + +    +   + F +    +  I      P ++      +  ++    +++ 
Sbjct: 302 FRSGGIQTMVATGMIGGVGFFLLSEIARQIGIAGLAPAWVAAWMPVVLVLAISTTVLLH 360


>gi|78212778|ref|YP_381557.1| permease [Synechococcus sp. CC9605]
 gi|78197237|gb|ABB35002.1| possible permease [Synechococcus sp. CC9605]
          Length = 386

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 115/331 (34%), Gaps = 20/331 (6%)

Query: 32  ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           + + +  +      + I +++  + IP  L    P    M +  V T ++ N+EL  + +
Sbjct: 45  MFELVRQMVDKNLPITIAVQVLLFSIPRWLAFSVPIGTLMASLFVFTRLSANSELTALRS 104

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
            G + + +I   L L++++++F F+  +++ P+ +   +    ++      S    ++ +
Sbjct: 105 LGITTVRMISAALALSMVMTLFTFVLNDVVVPRSQRYAEVTLKRSLGRSLASETGRDIIY 164

Query: 152 RLDDDLYI-------------KISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDR 198
                 +                S+   +  +  + ++D   +   ++  A     + D+
Sbjct: 165 PRFGTRFDSDGEEDGKGLNQLFYSRKFQDGEMADVTVLDFTRSGFTQMLRADRAIWNEDQ 224

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST--IVLKANDQNLSFLLNPNPN 256
            +    DG++      +   +   F  Y     S       I   A +  ++  L     
Sbjct: 225 ASWDFLDGQILTL-AANGSSTKADFDRYVYPLGSGPVRLAGIEKDAVNMTVAEALQAQRL 283

Query: 257 NPNYRP-ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSIS 315
                  +     R    ++ T  +  ++FGL       + +    R     + + +   
Sbjct: 284 YEEAGSIKEARKIRVRIQEKFTVPMACLVFGLFGATLGAQPSYRSSRSFSFVLTLGI--- 340

Query: 316 FGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
             V++   +    +       PIL  +L  +
Sbjct: 341 IAVYYVIGFSFSSLGVKGTLPPILAAWLPVM 371


>gi|206577932|ref|YP_002240777.1| putative permease [Klebsiella pneumoniae 342]
 gi|206566990|gb|ACI08766.1| putative permease [Klebsiella pneumoniae 342]
          Length = 365

 Score = 90.1 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 120/356 (33%), Gaps = 17/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  IP +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGIPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  LIK  + LA+       ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLIKAAMILALFTGAVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  D   +   +    N    +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQASDGNAVMFIESVNGNRFHDVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +   +   Q + LN G     + + +D  I  F +Y         ++
Sbjct: 182 NARPSVVVADSGELSQQKDGSQVVTLNKGTRFEGTAMLRDFRITDFNNYQAIIGHQAVTS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   ++  L               +  R+E H R T      I  L+ +  +    
Sbjct: 242 DPDDTEQMDMRTLWQT----------HTDRARAELHWRFTLVATVFIMALMVVPLSVVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ + +  +   L          S   +  +        ++       ++ +L+
Sbjct: 292 --RQGRVLSMLPAMLLYLVFFLLQTSIKSNGGKGKMDLAIWMWAINLLYFALAVLL 345


>gi|332969352|gb|EGK08377.1| YjgP/YjgQ family permease [Kingella kingae ATCC 23330]
          Length = 370

 Score = 90.1 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 137/365 (37%), Gaps = 20/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   ++      +     ++ I    Q +  +   +S + +++ +  + G+ +  + P
Sbjct: 2   IYKKQFIKETTLVAIGIFSVVLAILLFTQGVNMLGRAASGSVAIDAVGALIGFWVLGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+ I  ++G      IKPVL  A+ L++ +   +  + 
Sbjct: 62  LLLVLTAYISILTVLTRYWRDSEMAIWLSSGLGLKQWIKPVLTFALPLAMLVAAMQLFVL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR---LDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++     +     S +E+  F      ++ +Y           +  +FI +  
Sbjct: 122 PNAELRSREYGELLKQKQNLSLIEQGTFAELGKQNNRVYFVEQFDAEVGEMSRLFIREVD 181

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +     + +AQSG +     +R+ ++L +G  +  +    D   + F+   L   +A   
Sbjct: 182 EKGRDSVVFAQSGHMKLEADNRRVLVLQNGYRYTGNAGQGDFEQVSFQELQLVINTAPKL 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              +       S          N        Y++E   R++  +  ++  L++I      
Sbjct: 242 IEPINHRRTIPSQ---------NLIGSDNPQYQAELMWRISLPITVILLSLLAIPI---S 289

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + + +++        G + +   +   + P++  +L + +   + IF+LM 
Sbjct: 290 YFNPRTGNSYHVVVAVGFFLFYQNGLTLLRDAVEDGKIPFWAGLLPMHIIMAACIFVLMK 349

Query: 355 KKKYT 359
            +   
Sbjct: 350 MRSMP 354


>gi|319762860|ref|YP_004126797.1| permease yjgp/yjgq family protein [Alicycliphilus denitrificans BC]
 gi|330824940|ref|YP_004388243.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans
           K601]
 gi|317117421|gb|ADU99909.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans BC]
 gi|329310312|gb|AEB84727.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans
           K601]
          Length = 364

 Score = 90.1 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/343 (10%), Positives = 117/343 (34%), Gaps = 16/343 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + ++ +   + +++ +   S  + + + ++ + G+ +   L 
Sbjct: 2   LFDSSIRKELARSFGATLVVLITVVMTMMLIRVLGQASRGSVAPSDVMLVMGFTVLGQLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I  + G   ++L+ P+L  +  + + +     ++ 
Sbjct: 62  TILSLSLFVTVVGTLSRMYRDSEMVIWFSAGRGLLSLLAPLLRFSWPIMLAIAALSLVVW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     I++L  + +       +    F    +   +     +  +      +  + +  
Sbjct: 122 PWANRQIQELKTQYEQRSDVDRVAPGQFQESSNGSRVFFIDKDTPDANAASNVFIATNEA 181

Query: 183 THKIYYAQ---SGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +   +       I    +  +L++G+          + I +F  Y    +S + S   
Sbjct: 182 HRETITSAQSARIEIRNGERLALLHNGQRLETMLDKPGLRISEFTEYGTLIDSGSQSDPE 241

Query: 240 LK-ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                 ++   L            +    +++E   RL      + F ++ +  A     
Sbjct: 242 AGAIKTRDTWDL----------ARDPSPRHQAELGWRLGLAFAALNFVVLGLAVAIVNPR 291

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
             +   +     +  + + +       I         +P +  
Sbjct: 292 AGRSTSLAFALFAFMVYYNLMTVGQAWIGAGRFG--LVPFMLA 332


>gi|93004884|ref|YP_579321.1| permease YjgP/YjgQ [Psychrobacter cryohalolentis K5]
 gi|92392562|gb|ABE73837.1| permease YjgP/YjgQ [Psychrobacter cryohalolentis K5]
          Length = 428

 Score = 90.1 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/393 (11%), Positives = 118/393 (30%), Gaps = 53/393 (13%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFA 70
            +  +  +   F+V +    ++++   + +     + +L  I GY +P  L ++ P  F 
Sbjct: 4   QVASTTALVLGFLVVMMLGGRLIRYFGIAAEGNLDIGLLFTIIGYNLPYFLELILPLAFF 63

Query: 71  METTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIK 130
           +    V   +  + E+ +I+ +G SR  L + +  L + L +       + +P    + +
Sbjct: 64  IALMLVFGRLYVDQEMAVINASGVSRGRLGRLMTPLILALFVGEAALSIVGKPWGVRSSE 123

Query: 131 QLSAKAQLALTFSYLEENLFFRLDDDLYI------------------------------- 159
            +  +  L   F  +  N F    +                                   
Sbjct: 124 NVWQQQALTSAFDLIRPNQFISSGNYHLYVGSLSDDKKQLQDVILIQSEPEKKGSGAKNN 183

Query: 160 -------------KISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAII---- 202
                         +      N  +    + + +     I  A+         + +    
Sbjct: 184 TAKNSAMDLENNIDVETTEQLNIPELPTALANNNISKDTITLAKRAEQVDTGNSGVTQLD 243

Query: 203 LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND-QNLSFLLNPNPNNPNYR 261
           L  G  +     S   + + F  Y +    ++   I     + Q +  L      N    
Sbjct: 244 LFQGRRYEVGAGSLKYNQVGFDRYRITLTESSKEVITEDNIETQAIGPLWQAATGNAQVG 303

Query: 262 PELLETYRS-EFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
                     E   RL+     +I  ++++  A    +  ++ +   +F S+ +      
Sbjct: 304 SNNAMRAAQGELGYRLSLPWLMIIAPMLAVPLA---QVRPRQGRWLRLFPSILLFVSCAL 360

Query: 321 GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           G   + + + +    +      +    ++ L M
Sbjct: 361 GIISLKNAVGKGSVSVWAYAWLILGFMALALYM 393


>gi|124025509|ref|YP_001014625.1| putative permease [Prochlorococcus marinus str. NATL1A]
 gi|123960577|gb|ABM75360.1| possible permease [Prochlorococcus marinus str. NATL1A]
          Length = 395

 Score = 90.1 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 132/368 (35%), Gaps = 19/368 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + +IL  +      S      ++  +  I   I  +       ++ ++I    +P+ +
Sbjct: 24  LLDRWILFELLPPLFFSIAAFTVVSLSVGVIFDLIRKIVEIGLPFSVAIQILLLKLPSFI 83

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T     S+N N+E+  + + G S   +I P L L+I +S   FI  N I
Sbjct: 84  VISFPMAMLLSTLLAYGSLNDNSEIKALKSIGISVYRIILPGLILSIAMSYMTFIFNNNI 143

Query: 122 EPKCRSTIKQLSAKAQLALTFSYL-------------EENLFFRLDDDLYIKISKYNPNN 168
            P      + + A +      +               +    ++ +   ++  +    + 
Sbjct: 144 VPNTNKNAEIILANSLGRSFANEQGEDIIFSKKGEILDPYSSYKKNGVTHLFYAWKFIDG 203

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            +  + ++D       ++  A+ G  + D+      +G++   SP   + +  KF S+  
Sbjct: 204 QMLDVTVIDFSKLGFTQMLKAKKGIWNSDKNNWEFFEGDILTLSPDGSN-TRTKFLSFLY 262

Query: 229 QTESA--NSSTIVLKANDQNLSFLLNPNP-NNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
              +   N + +   +ND NL            +   +     +    ++ T  +   +F
Sbjct: 263 PLGTELTNIAQLPKDSNDMNLGEANTAMKLYQSSGNIKEARRMKVRIQEKFTLPIACSVF 322

Query: 286 GLISIVAADKRAL-VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
            LI       +     + +      I + I + + + FS +  K   NP++     +FL 
Sbjct: 323 ALIGCSFGVMQKSGGGRSQSFGLSIILILIYYILSFSFSSLGVKGIINPFFAAWSPVFLS 382

Query: 345 CISSIFLL 352
            +   FLL
Sbjct: 383 MLGGGFLL 390


>gi|27379217|ref|NP_770746.1| permease [Bradyrhizobium japonicum USDA 110]
 gi|27352368|dbj|BAC49371.1| bll4106 [Bradyrhizobium japonicum USDA 110]
          Length = 363

 Score = 90.1 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 117/359 (32%), Gaps = 13/359 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y       + L     I  +  ++  ++ +   S  ++ S  ++ + S + +P +
Sbjct: 4   NTLGRYFAGRFVVAALGVFASIFLLLVLVDYIEMVRKTSGLASASAIMVAETSLFRVPQL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  +TPFC  +       +++R  EL++    G S    I P L  A+L+ +   ++ N 
Sbjct: 64  LEKLTPFCMLIGAMTCYLALSRRLELVVARAAGVSAWQFISPALGSALLIGVIATVAYNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFR-----LDDDLYIKISKYNPNNTLQGIFI 175
           +    R   K++ A+   +     +++   F       D    I  ++            
Sbjct: 124 MSANLRELSKRMEAELFGSAPGGGIQDASGFWLNQVTNDGQTIINAARSEQQGVRLTGLT 183

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           +   DT+ H     ++   +L+    I  +           + +++   +       A  
Sbjct: 184 LFRFDTEQHFKERVEAREAELEVGQWIFRNVRRFSLDGPPIEQAVLAIPTT---LTEAQV 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                     +   L +    +          YR ++HK L Q        +++   +  
Sbjct: 241 RNSFSTPETVSFWQLPS-YIRSSESSGFATAGYRLQYHKLLAQPFLLAAMVMLAASVSL- 298

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               R       +   +   F ++   S +   + +     PI   +L  +       +
Sbjct: 299 -RFFRMGGVQKMVLSGVGAGFLLY-VLSKVTEDLSKAELMHPIAAAWLPVVVGGLTGFL 355


>gi|291614865|ref|YP_003525022.1| permease YjgP/YjgQ family protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584977|gb|ADE12635.1| permease YjgP/YjgQ family protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 377

 Score = 90.1 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 119/360 (33%), Gaps = 19/360 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F   ++R    + L+    ++ I    Q+++ +    S   +++ +L + G+     LP
Sbjct: 20  IFYWALVREFASTGLLVSSILLGIVVFTQLIRLLGESVSGMLAVDGVLAMLGFTSLNYLP 79

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +     L+   R++E+++   +G      I+PVL  AI +++ + +   ++ 
Sbjct: 80  VLLSISLFLSVLLTLSRSYRDSEMVVWFTSGIGLTRWIRPVLGYAIPVTLLIALLSLVLS 139

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   S   +   +       S     +F        +   +   +   +   I       
Sbjct: 140 PWALSKADEFKRRLDSRDDVSAATPGVFRESKQADRVFFLEDVDSQKKRVGNIFVQSTQN 199

Query: 183 THKIYYAQSGSID----LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             +                 + +++ +G  +   P   D  I++F+ Y ++ E A     
Sbjct: 200 GKEGTMVAKEGYQETAPNGDRFLVMLNGTRYEGIPGRADFRIVEFERYAMRIEPAELRED 259

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           +      +  +LL                  SE   R+   L  +I     ++A     +
Sbjct: 260 LPHLQAFSTLYLL----------QNPTAWNLSELEWRIGLPLSALILS---LLAIPLSYV 306

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIKK 356
             +  +   +  ++ I        S     +   +      +L + L     + +L   +
Sbjct: 307 NPRAGRSLNLIAAMVIYMFYNNMISVTNSWVARGKISPSAGLLGIHLLMFGVMLVLFYHR 366


>gi|329894347|ref|ZP_08270217.1| putative permease [gamma proteobacterium IMCC3088]
 gi|328923143|gb|EGG30466.1| putative permease [gamma proteobacterium IMCC3088]
          Length = 353

 Score = 90.1 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/337 (10%), Positives = 99/337 (29%), Gaps = 5/337 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+   +  +  +  L +V +  +  ++  +  + ++  + +  L      +P  
Sbjct: 1   MRLLDRYVGMQVIYATCLVLLVLVGLDALSALIDELQDLKAN-YTFSKALLYVAASVPAR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +     L  +   +EL++I   G S   L++ ++   ++ +  + I    
Sbjct: 60  IVELAPIGILIGVLVALGQLASTSELVVIRGAGLSSWHLLRILMKPVLVFAGLMLIMGEF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK     +   A A            ++ R         +                 +
Sbjct: 120 VVPKSEQFGEAERALALSNKGSITGRYGMWNREGRHFIHFNAVQAGGVIYGVTLFTFDDN 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            + H+   A   +        +L + +  + +      S      +         +   L
Sbjct: 180 WRLHESMSANRATFQRAG--WLLENVQRTQVNSWGSQTSEHTTLLWETDLTPDLLAMESL 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +++ L          +      Y     ++LTQ L   +  L+++          
Sbjct: 238 SPERLSINGLFQ-YSQYLKQQGLESADYEVAAWRKLTQPLAIFVLVLVAMGFIFGPLRDG 296

Query: 301 QRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYI 336
                  I   + + F       + +      +P   
Sbjct: 297 TLGLRVFIGTLVGLVFKISQDVVASVTIVYGISPALA 333


>gi|154253776|ref|YP_001414600.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154157726|gb|ABS64943.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 363

 Score = 90.1 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/338 (10%), Positives = 95/338 (28%), Gaps = 15/338 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   Y+ R      L++    + + ++I++++ +   +     +  +++ I+   +P + 
Sbjct: 6   TLSRYLGRQFLGVVLLTFGVFIVLIFMIELVELLRRSADKPDVTFGLVVTIALMEVPRIG 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF            ++RN EL++    G S    I P L +A ++  F+    N +
Sbjct: 66  AQTLPFAVLFGGMAAFLRLSRNNELVVARAAGVSVWQFIAPALAVAFVIGAFVTTVFNPV 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFR------LDDDLYIKISKYNPNNTLQGIFI 175
                +  +QL +K                           +   +   +     +    
Sbjct: 126 SATLTTRAEQLESKYLSRQASFVAVSANGLWLRQADSTGQSVVHALRMDDGFRLRRVTIF 185

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           +  +  +      A +  +        L D  V       +                   
Sbjct: 186 LYDQGNRFSGRIDAATARLRPG--YWELADVWVMM---DGEQSRKYDTYRQETSLTQKQI 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                +    +   L +               Y+  FH+ L          LI+   +  
Sbjct: 241 EESFAREESISFWELPH-FIATAEAAGFSARRYQIYFHQLLATPALLCTMVLIAAAFSL- 298

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
             + R    +  +   +   F +++  +  I       
Sbjct: 299 -RVTRMGGLLQMVLGGIFSGFLIYFLGNLAIALGLSGI 335


>gi|187922983|ref|YP_001894625.1| permease YjgP/YjgQ family protein [Burkholderia phytofirmans PsJN]
 gi|296162275|ref|ZP_06845069.1| permease YjgP/YjgQ family protein [Burkholderia sp. Ch1-1]
 gi|187714177|gb|ACD15401.1| permease YjgP/YjgQ family protein [Burkholderia phytofirmans PsJN]
 gi|295887429|gb|EFG67253.1| permease YjgP/YjgQ family protein [Burkholderia sp. Ch1-1]
          Length = 382

 Score = 89.7 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/375 (10%), Positives = 109/375 (29%), Gaps = 25/375 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRIYERYFARQIYLTFIFILFAFSGLFFFFDLINELNSVGHGNYKFQYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L +  ++   +
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVLLTYLIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL---------DDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  +   S  E  ++ +              ++ + +  P+ T+ 
Sbjct: 121 VGPYTDQLSERVRLEALGSSVSSNFESGVWVKDTLTARADGEQVTRFVNVGELKPDATIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-----------SPISKDISI 220
            + I +                         L      +              ++     
Sbjct: 181 NVRIYEFDSKFRLSNVRTAKSGKYQPPGHWQLTGVTDTQLIDVPPPPGTPADALNPVYRA 240

Query: 221 MKFKSYTLQTE---SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
            +            +    +++L + D+   F L     +     +  + Y     ++L 
Sbjct: 241 KEVAVPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTENHQDTQRYEIALWRKLL 300

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
                 +  ++S+  A      R       +F  + +        +   H    N +  P
Sbjct: 301 YPFAVFVMLVLSLPFAYL--HTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358

Query: 338 ILYLFLFCISSIFLL 352
           +       +  +  L
Sbjct: 359 LTAATPGLVYLVLGL 373


>gi|149927924|ref|ZP_01916174.1| YjgP/YjgQ like transporter [Limnobacter sp. MED105]
 gi|149823363|gb|EDM82596.1| YjgP/YjgQ like transporter [Limnobacter sp. MED105]
          Length = 401

 Score = 89.7 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/374 (10%), Positives = 110/374 (29%), Gaps = 27/374 (7%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y    + ++     +  V +     ++  ++ +S    S           +P  +  + P
Sbjct: 14  YFRSELYKAISFVMVAFVGLFAFFDLIAEVDRLSLPGTSWFYYFVAVLLGLPARVYEIAP 73

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               + +   L  +  ++EL  +   G S  +++K ++ +A  + +   +    + P   
Sbjct: 74  IAALIGSIYALVQLAASSELTAMRAAGLSTTSMLKMLVRIAAGVVVITVLFGEAVAPLAE 133

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDD---------DLYIKISKYNPNNTLQGIFIVD 177
                + AKA             + R                  S       L+  +   
Sbjct: 134 RAAVPMRAKALGYEVDRDFRSGYWMRDTYSAPDAESRVRFVNFDSFNKDGELLKLEYYEL 193

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK---------------SPISKDISIMK 222
             +++      A+S   D D     L +  V R                +  + +   ++
Sbjct: 194 DPESRIRAWVRAESAKFDPDSGDWELRNVLVQRYFDEAVSNANAARAGLTIQASEFESLE 253

Query: 223 FKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
              +T        + + ++ +  +   L N +    +   +  +     F K++      
Sbjct: 254 TMRWTSNLSPELLTGLFVRPDRMSAWQLYNYSKF-LSSNLQATDNIDLAFAKKIMYPFAI 312

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY--IPILY 340
           +I  +IS+  A                + + + F +       +  +   P +    +  
Sbjct: 313 LIMMMISLPFAYLHFRSGSVSVKVFAGVMIGVGFHLVNNLFSHLSMVASFPPFVSAALPS 372

Query: 341 LFLFCISSIFLLMI 354
           L  F +    L  +
Sbjct: 373 LLGFVVGMGALWWV 386


>gi|91782194|ref|YP_557400.1| membrane protein, YjgP/YjgQ like [Burkholderia xenovorans LB400]
 gi|91686148|gb|ABE29348.1| membrane protein, YjgP/YjgQ like protein [Burkholderia xenovorans
           LB400]
          Length = 382

 Score = 89.7 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/375 (10%), Positives = 109/375 (29%), Gaps = 25/375 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRIYERYFARQIYLTFIFILFAFSGLFFFFDLINELNSVGHGNYKFQYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L +  ++   +
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQSLRSLLKIGIPLVLLTYLIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL---------DDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  +   S  E  ++ +              ++ + +  P+ T+ 
Sbjct: 121 VGPYTDQLSERVRLEALGSSVSSNFESGVWVKDTLTARADGEQVTRFVNVGELKPDATIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-----------SPISKDISI 220
            + I +                         L      +              ++     
Sbjct: 181 NVRIYEFDSKFRLSNVRTAKSGKYQPPGHWQLTGVTDTQLIDVPPPPGTPADALNPVYRA 240

Query: 221 MKFKSYTLQTE---SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
            +            +    +++L + D+   F L     +     +  + Y     ++L 
Sbjct: 241 KEVAVPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTENHQDTQRYEIALWRKLL 300

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
                 +  ++S+  A      R       +F  + +        +   H    N +  P
Sbjct: 301 YPFAVFVMLVLSLPFAYL--HTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358

Query: 338 ILYLFLFCISSIFLL 352
           +       +  +  L
Sbjct: 359 LTAATPGLVYLVLGL 373


>gi|78486087|ref|YP_392012.1| permease YjgP/YjgQ [Thiomicrospira crunogena XCL-2]
 gi|78364373|gb|ABB42338.1| YjgP/YjgQ family protein [Thiomicrospira crunogena XCL-2]
          Length = 370

 Score = 89.7 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 58/372 (15%), Positives = 126/372 (33%), Gaps = 18/372 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E Y+ R +    L+  + ++ I    + + +I  VS    ++      +   +P  
Sbjct: 2   MNLIERYLGRVLVSHTLLVLMVLLIILGFSEFMIQIGKVSDD-YTVAKGAMYTVLKLPVY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    + T   L S+  + EL I+  TG S   +   V+  A +L +   +    
Sbjct: 61  GYEIFPVALLIGTLIGLGSLANHAELTILRVTGWSIRRIFFAVMKSAFILWVCAAVIGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S  K++  +A          ++ + R   + YI + +   +     + I    D
Sbjct: 121 VAPASESYAKKMRGEALHKNFSIGSTDDFWMRDG-ERYIHVGRVISDTQFYDVTIYSLED 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILND--------GEVHRKSPISKDISIMKFKSYT----- 227
            Q  +  +A +          +L           ++   SP  K    ++FK Y      
Sbjct: 180 GQLSEQVHANTARYSEKEGQWVLYSLNRKVLDWQKMPALSPDRKTWKKLQFKQYDEVEGA 239

Query: 228 --LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
             L        T+ ++     ++ L +   +         E Y+  F ++L      +  
Sbjct: 240 VDLPVSPTLLQTLHVETRYMGITDLFS-YISFLEENGLDAEAYKLAFWRKLAMPFVILGM 298

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
             +               +   + I + +SF +       +  + Q P  +      +  
Sbjct: 299 IALVFPLIFGSQRQVSIGQRIFVGIMIGMSFHLLNQIFGNLSVVYQLPAIMGAFLPSIVL 358

Query: 346 ISSIFLLMIKKK 357
           +S+ FLLM + +
Sbjct: 359 MSAAFLLMRRLR 370


>gi|183600430|ref|ZP_02961923.1| hypothetical protein PROSTU_04001 [Providencia stuartii ATCC 25827]
 gi|188020226|gb|EDU58266.1| hypothetical protein PROSTU_04001 [Providencia stuartii ATCC 25827]
          Length = 365

 Score = 89.7 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 134/357 (37%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  + +  +          +++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFVLMLIFFSQKSIDILGAAVQGNIPSDLVLPLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +   +E+ ++   G  +  L+K  L LA L ++    +   + 
Sbjct: 62  LILPLSLFLGLLMTYSKLYTESEITVMHACGLGKSVLVKAALVLATLTALVAIGNIAWML 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q+ A A+     + + E  F    D   +        N  + +F+   R T 
Sbjct: 122 PWSSQYQEQVLADAKANPGLAAMVEGQFKTTKDRNIVLYIGDVKGNDFKNVFLAQLRATN 181

Query: 183 --THKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +  D   RQ ++L++G  +  + + +D  I  FK+Y    +   S  
Sbjct: 182 EQRPSVVVADSGYMREDADGRQIVVLDEGTRYEGTALLRDFRITDFKNYQAVIDHKPSDA 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +   +N+  L   N  + N          +EFH RLT     V+  L+         
Sbjct: 242 RNDRVEQKNMLQLWKANDFDSN----------AEFHWRLTIVFSVVVMALM---VVPLSE 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI-PILYLFLFCISSIFLLM 353
           +  ++ ++  +  ++ +    F   S + +  E+        ++       ++ +++
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSTLRNSAEKGDVDPKYAMWAVNLGYLALAIIL 345


>gi|291279033|ref|YP_003495868.1| hypothetical protein DEFDS_0631 [Deferribacter desulfuricans SSM1]
 gi|290753735|dbj|BAI80112.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 344

 Score = 89.7 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/353 (15%), Positives = 124/353 (35%), Gaps = 13/353 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E Y+L+ +   FL+  LF +FI  + +I+    L+ +       + ++    IP+ 
Sbjct: 1   MRITEKYVLKELVPVFLVGNLFFIFILLIDKIVDLSELILAKNVPFFFVAELIIAYIPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +    V   ++ ++EL+ + + G  +  + KP + L  +  +   +    
Sbjct: 61  LVITIPTSTLLSALIVYGRLSDDSELVAMKSLGADKYNIFKPSILLGFISLVLALLMSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK      +   +    ++ +  +EN  +       +   K    N   G+ I++ +D
Sbjct: 121 LMPKGNDFAIERLMQISKYVSINDFKENELYTEIPGFVLYTDKRVDKNKFLGLIIINKKD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +    +  +         L++G +       +  S ++FKS+ +           +
Sbjct: 181 HIVIQAKKGEIVNTTEGSLVFNLDNGVL--IDTKGEIPSKLEFKSFVVNVPIITEKKFDV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +               N           + E  KR       +I  +   V     +   
Sbjct: 239 RNERLMS-------IRNLINHLNKSNIIKFELSKRFALPFASIIMAIFGAVV---GSFFH 288

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKI-EQNPYYIPILYLFLFCISSIFLL 352
           +  K   + +S+ I            + I   NPY    +   +F I  ++LL
Sbjct: 289 RGGKAFGLSVSIIIVLIYNTLLLLSQNLINMLNPYLAAWVANIIFIILLVYLL 341


>gi|300690719|ref|YP_003751714.1| permease, predicted YjgP/YjgQ family [Ralstonia solanacearum PSI07]
 gi|299077779|emb|CBJ50417.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
           solanacearum PSI07]
          Length = 372

 Score = 89.7 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 117/361 (32%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     L ++       +++ + + ++   S N +L + G      L 
Sbjct: 2   IFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLATLGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++    G S    I+PVL  ++   + + +      
Sbjct: 62  ILLCATLFISVLLVLTRWYKDSEMVVWFTAGISLTDFIRPVLRFSLPFVVLVALLALFGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P           + +     S +    F       Y+   +           +  +   Q
Sbjct: 122 PWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANAAQ 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT-ESANSST 237
                      +  +     + ++L+ G  +  +P   D  I++F  Y ++       + 
Sbjct: 182 DKIGVALAKTGEFKTSPNGDRYVLLDKGRRYEGTPGQLDYRIVEFDRYGVKVASKPPQAD 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             L    +  + LL                   E   R+   L  + F LI+I  A    
Sbjct: 242 ANLPTKSRPTTELL----------ANPTPENMGELVWRIGLPLLALNFVLIAIPLAY--- 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  +  +  P+  ++ I        +     + Q      +L  +   +++    M+  +
Sbjct: 289 VNPRLGRYTPMIFAVLIYLTYSNLLNLSQAWVAQ-GKMNAMLAWWPIHLAAFVCAMLLFR 347

Query: 358 Y 358
           +
Sbjct: 348 F 348


>gi|254521723|ref|ZP_05133778.1| permease YjgP/YjgQ family protein [Stenotrophomonas sp. SKA14]
 gi|219719314|gb|EED37839.1| permease YjgP/YjgQ family protein [Stenotrophomonas sp. SKA14]
          Length = 360

 Score = 89.7 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 124/356 (34%), Gaps = 14/356 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +L    G      
Sbjct: 1   MLKLDRYLLGDFVQSFLATLIVLLVVSVGGVLVDILGNIADGRLPAKLLFSQLGLQFIAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     +  + R++E+ +I   G     L++P+L L + + + +      
Sbjct: 61  LPLILPLALMLGLLLAIARLYRDSEMAVITAIGVGPKRLLRPLLMLVVPVVLLVGACSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +Q+  +A  ++  + LE   F  L +   + +S  +P+ T  G   +  + 
Sbjct: 121 LGPWAGRVAEQMIIEANRSVLMAGLEPGRFTPLPNGGVVYLSSISPDGTELGKVFMQRQK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAII---LNDGEVHRK-SPISKDISIMKFKSYTLQTESANSS 236
               ++  A  G +  +        L+DG      +    D  +  F    +       +
Sbjct: 181 DDRIEVVSAAGGRMFFEGARQRFLELDDGHQVEGPAAGGLDYRLATFARNDVALPDGAQT 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                        L+           +     +++ H+RL   L  + F L+++      
Sbjct: 241 RTEDDPELMPTLQLI----------GDGRPQAQAQLHRRLAPPLIALAFALLTVPLGRSS 290

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
              ++  ++    ++  +   + +  S  I   +                 SI++ 
Sbjct: 291 PRQQRYGRMMLALMAYMVGTNLMFIGSGWIATGKIPAALGLWWLTLPLLALSIWMY 346


>gi|257454351|ref|ZP_05619614.1| permease YjgP/YjgQ family protein [Enhydrobacter aerosaccus SK60]
 gi|257448254|gb|EEV23234.1| permease YjgP/YjgQ family protein [Enhydrobacter aerosaccus SK60]
          Length = 357

 Score = 89.7 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/358 (11%), Positives = 105/358 (29%), Gaps = 6/358 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ +    +   + + +  +  V   L  +  + +   +    L+   Y  P  L 
Sbjct: 2   ILSRYVKKQALFAMTGAIIGLWLLKVVFDYLAELQDL-NDHYNYLDALRFIAYSAPRDLL 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              PF   +     L  +   +EL +I   G SR  ++  V+  AI+  I   +    + 
Sbjct: 61  DYMPFGTLLGAVVGLGLLANTSELTVIQAAGISRFKIVGWVMQPAIIFVIIRLLLGQYVV 120

Query: 123 PKCR---STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P        +K        A+   + ++       D    K    N             +
Sbjct: 121 PTSNQLAHQVKHDKPLLSSAINGYWDKQANRIINIDHANTKGELKNIKVWQLDDNAHIQQ 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             Q     +    + D      +    ++   +     ++ +   +  L  E +    + 
Sbjct: 181 VLQADTGSFVSQNTADKTSGWQLQQIKQLTIAADGHSQLTTIPTMTLQLPIEPSAIYLLT 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
              ++ +++ L   +             +   F K+L      +   L++          
Sbjct: 241 RSPDNMSVTEL-WQHQQLLAKDKRRSLEHEVAFWKKLLAPFAMLSLVLVACSFVFGSLRN 299

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +       I +   + F         +        +  ++ L +   +++ + +I+ K
Sbjct: 300 QSLGYRIVIALLFGLVFSYLQDLVGFVSLSTGFSPFF-MVLLPIIASAALGVYLIRNK 356


>gi|152981611|ref|YP_001354150.1| hypothetical protein mma_2460 [Janthinobacterium sp. Marseille]
 gi|151281688|gb|ABR90098.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 376

 Score = 89.7 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 120/362 (33%), Gaps = 21/362 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R +  +       +  I   + +++ +   +    + + ++ + G+     LP
Sbjct: 2   IFQRALRRDLLSTAGAVFTTLFTITITVTLIRILGQAAGGKIASSDVVALLGFSALNYLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    V+T   +++E+++   +G S    I+PVL   + +     +    + 
Sbjct: 62  ILLNLTGFVAVLLVVTRSYQDSEMVVWFASGLSLAKWIQPVLMFGLPIVTLTAVLSLFLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P           +       + +    F        +   +    ++ +   I  S    
Sbjct: 122 PWSNEQSAVYKERYANREDIARVSPGKFQESSSSDRVFFVEGVSGDSTKVKNIFVSSVLN 181

Query: 183 THKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                               + ++++ G  +   P   D  +M+F  Y +   + + + +
Sbjct: 182 GKTSVVVAKEGTVEIDQAGDKFLVMHQGRRYDGIPTQSDFELMEFDRYGVLVATQSKALV 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              +     +  L  N NN N           E   R++  L  ++  L++I       +
Sbjct: 242 GDTSARATSTKELLSNRNNFNDG---------EILWRVSLPLMGILLMLLAIPLGF---V 289

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-----PYYIPILYLFLFCISSIFLLM 353
             +  +   + I+L +        S+    + QN       + P+  + L  ++  F   
Sbjct: 290 NPRGGRSANLLIALFLFVFYSNMLSFAQATVVQNRSTLMLAWWPVHLVALIVVAVFFTWR 349

Query: 354 IK 355
           +K
Sbjct: 350 LK 351


>gi|167470530|ref|ZP_02335234.1| putative permease [Yersinia pestis FV-1]
          Length = 337

 Score = 89.3 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 119/345 (34%), Gaps = 19/345 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNVVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ +++  G  + +LI   L LA+  S    I+   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMNACGMGKKSLIMAALILALFTSGLAAINTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   + + L    F   +D                 +F+   R   
Sbjct: 122 PWSSKHQDVVLNDAKANPSLAALGGGQFKSSNDGNSALFIGNVAGKEFNRVFLAQLRPNG 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +             +    Q +ILN G  +  + + +D  I  F  Y           
Sbjct: 182 NQRPSVVVADSGHMSELPDGSQMVILNKGTRYEGTALLRDFRITDFVDYQAVIGHKQVQQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A+  ++  L      +           R+EFH RLT  +  VI  L+         
Sbjct: 242 SSNGADQMSMKELWRSQEPDA----------RAEFHWRLTLIVSVVIMALL---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           +  ++ ++  +  ++ +    F   S +  K  +     P+++++
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSKAGK-GQLDPLVWMW 332


>gi|170692023|ref|ZP_02883187.1| permease YjgP/YjgQ family protein [Burkholderia graminis C4D1M]
 gi|170143307|gb|EDT11471.1| permease YjgP/YjgQ family protein [Burkholderia graminis C4D1M]
          Length = 382

 Score = 89.3 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/375 (10%), Positives = 109/375 (29%), Gaps = 25/375 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R +  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRIYERYFARQVYLTFIFILFAFSGLFFFFDLINELNSVGHGNYKFQYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L    ++   +
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVFLTYLIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL---------DDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  +   S  +  ++ +              ++ + +  P+ T+ 
Sbjct: 121 VGPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTLTARADGEQVTRFVNVGELKPDATIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-----------SPISKDISI 220
            + I +                +        L      +              ++     
Sbjct: 181 NVRIYEFDSKFRLSNVRIAKSGVYQPPGHWQLTGVTDTQLIDVPPPSGTPADALNPVYRA 240

Query: 221 MKFKSYTLQTE---SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
            +            +    +++L + D+   F L     +     +  + Y     +++ 
Sbjct: 241 RQVALPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTENHQDTQRYEIALWRKVL 300

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
                 +  ++S+  A      R       +F  + +        +   H    N +  P
Sbjct: 301 YPFAVFVMLVLSLPFAYL--HTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358

Query: 338 ILYLFLFCISSIFLL 352
           +       +  +  L
Sbjct: 359 LTAATPGLVYLVLGL 373


>gi|149907704|ref|ZP_01896451.1| hypothetical protein PE36_07442 [Moritella sp. PE36]
 gi|149809374|gb|EDM69303.1| hypothetical protein PE36_07442 [Moritella sp. PE36]
          Length = 361

 Score = 89.3 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 125/354 (35%), Gaps = 20/354 (5%)

Query: 13  GRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAME 72
            +S +     +  I    Q +  ++ V +     N+++++  Y +P +  ++ P    + 
Sbjct: 1   MKSQVAVLFILSLIFVSQQFVALLSKVMTGALPANLVMEMLLYTMPALGTLILPVSLFIG 60

Query: 73  TTNVLTSMNRNTELLIIDNTGTSR-ITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
                  +   +E++I+   G +    L+  +L  ++ + +  F +           ++ 
Sbjct: 61  ILFAHGRLYAESEMVILTACGYTPSRILMSSLLLSSVTIGLVAFNAFIYAPTAEEGRVQL 120

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DSRDTQTHKIYYA 189
           L          +  +            + +  Y+ + +L+ IFI    S++ +   I  A
Sbjct: 121 LENVDADVGLATLKQGRFESLDGGLAVVYVESYDSDKSLRKIFIAKSPSQEGERPSIVLA 180

Query: 190 QSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             G+++ D    Q + L+ G  +      +D  I+ F  Y +  +  + S    K     
Sbjct: 181 DKGNVESDDNGSQWLKLSQGLRYEGELSQRDFRIVDFSEYRVFIQEQDVSERGRKTKALP 240

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
            S L N N             ++ E   R+ Q    V   L++++      +  ++ +  
Sbjct: 241 TSELWNSNEF----------EHKVELQWRIAQ---VVAIPLLTLLVVPLAMVNPRQGRYA 287

Query: 307 PIFISLSISFGVFWGFSYIIHKIE-QNPYYIPILYLFLFCISSIFLLMIKKKYT 359
            +F +L +    F   S     I  +    +   ++    +  + +      Y+
Sbjct: 288 KLFPALLMFLTYFMLLSAARSAILDEKLPLVFGFWIVHLGVLILAIWFNLANYS 341


>gi|292486865|ref|YP_003529735.1| inner membrane protein YjgP [Erwinia amylovora CFBP1430]
 gi|292900738|ref|YP_003540107.1| permease [Erwinia amylovora ATCC 49946]
 gi|291200586|emb|CBJ47717.1| putative permease [Erwinia amylovora ATCC 49946]
 gi|291552282|emb|CBA19319.1| Inner membrane protein yjgP [Erwinia amylovora CFBP1430]
          Length = 366

 Score = 89.3 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 125/345 (36%), Gaps = 19/345 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLTLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  +  L+K  + L +  ++   ++   + 
Sbjct: 62  LILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKAAMILMLFTALLAALNVGWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+     + L    F +  D   +   +    NT + +F+   R   
Sbjct: 122 PWSARYQNEVMQNAKANPGAAALAAGQFQQSADGQSVLFIENVKGNTFRNVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G ++      Q + L+ G     + + +D  I  FK+Y         + 
Sbjct: 182 NARPSVVVAEQGRMEQRVDGSQIVTLDSGTRFEGTALLRDFRITDFKNYQAIIGHQAVTL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               +   +L  L + +  +          +RSE H RLT     +I  L+         
Sbjct: 242 DPNDSEQMSLDTLWHSDKPD----------FRSELHWRLTLVFSVLIMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           +  ++ ++  +  ++ +    F   S +     +     P + ++
Sbjct: 289 VNPRQGRVLSMLPAMLLYLVFFLLQSSLRSSGGK-GRIDPAVAMW 332


>gi|296125162|ref|YP_003632414.1| permease YjgP/YjgQ family protein [Brachyspira murdochii DSM 12563]
 gi|296016978|gb|ADG70215.1| permease YjgP/YjgQ family protein [Brachyspira murdochii DSM 12563]
          Length = 356

 Score = 89.3 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 108/357 (30%), Gaps = 4/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L+     F  S L  V +  +  +  R++  +   E +N  +       P  
Sbjct: 1   MKKLNAYLLKEFLSFFFGSLLLFVVLVTIADLSSRLSFYTEHPELINYFITYHLARAPHN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P      +T VL +  +N E+L I+N+G S      P+  + I+L + L      
Sbjct: 61  TYYIFPVALMFASTYVLGTFVKNKEMLAIENSGISLFKFSMPMFVIVIMLCLILVFFWQF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +           +   +     S       F  ++ LY   + +     +    ++   D
Sbjct: 121 VAAPLNKVSFAANDAMRGNKQASKSGPWQLFGGNNYLYFIDTYFYQEQYMTNTILLKMND 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               K   +       +          +      +K+I + +  +Y L            
Sbjct: 181 DGGIKFRISSPYIQWNNDDKKWYVKNGILTTFSENKEIEVKEINNYPLDVLERPEHFYGR 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D                         ++ H R++      I  L++ + +       
Sbjct: 241 PLLDSMSLTEEAHIIKLQKEVNMNTSRLETDLHYRISYCFSGFIIVLLASLFSKFSTQS- 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
               +    + + I   +++    I   + +     P +  ++  I    L ++  K
Sbjct: 300 ---VLVVSLVMVIIVALLYYSILMIFRSMGEAGNMNPFIAAWMPNIIFAILCILAFK 353


>gi|297171530|gb|ADI22528.1| predicted permeases [uncultured Oceanospirillales bacterium
           HF0500_09M11]
 gi|297182284|gb|ADI18453.1| predicted permeases [uncultured Oceanospirillales bacterium
           HF4000_13G19]
          Length = 353

 Score = 89.3 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 97/357 (27%), Gaps = 4/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y  R +    L     IV +  +   +  +         +   L+     +P  
Sbjct: 1   MTLLKRYFWRSVLLPSLAIVAIIVGLDCLFSFIYELE-FLRGGYQVMQALQFVLTTVPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    + T   L  M  + EL +I   G S + +   VL   I L +        
Sbjct: 60  FHEYLPMAILLGTLIGLGLMANSGELSVIRAAGVSTLQVSWMVLRPVIFLMLLSIPVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   +  +        E   + R  D+     +               + D
Sbjct: 120 LAPYTEQVAQSNRSLQEGGGEALRSEYGFWHREGDEFIHINTVQPNGVLYGLTRYRFNDD 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q  +  + +      D     L + +  R      +        +         S +VL
Sbjct: 180 HQLEESQFVERALYQGD--HWTLQNIQGTRFGDDRTETYTEGGGRWDTSLTPQLLSIVVL 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +     ++ L N        +      Y   F ++L      +   LI+I          
Sbjct: 238 EPRRLAMAKLWN-YTRYMKEQGLQSADYMLAFWQKLLMPAATIGMVLIAISFIFGPLREV 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    I   ++F     F   +  + +    +      L C+     L+++ +
Sbjct: 297 TMGLRMAAGIVAGLTFNYGQQFFGHLSLVFRTEPLLAAGLPPLLCLVLGIWLLLRVR 353


>gi|15806095|ref|NP_294799.1| hypothetical protein DR_1075 [Deinococcus radiodurans R1]
 gi|6458807|gb|AAF10648.1|AE001958_2 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 394

 Score = 89.3 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 46/385 (11%), Positives = 109/385 (28%), Gaps = 36/385 (9%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y+ R +    L   L    I         I+    S   ++++ +  GY +P  L
Sbjct: 15  TRLTRYVTRELLPPLLAGTLLFTAILSFGYFF--ISSQWLSGVPVSLIARWIGYQLPDTL 72

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V P    + T      MN   EL+ +   G     + +P   + +L++         +
Sbjct: 73  VKVLPMAVVLMTVVAFGRMNTERELVAVQAGGIGLGRVTRPAAVVGLLVTALSVWLSLWV 132

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     + L   A      S L                        +QG+ +      
Sbjct: 133 APRANVETRGLYWDALTGAGLSQLVGKTVDLGQGLTLAMQGYDAGARQMQGVRVEKWDKD 192

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI--SIMKFKSYTLQTESANSSTIV 239
              +     + +   +   + L   +V+R    +      +        +        +V
Sbjct: 193 NFRQGMVVFADAGKFEGNQLSLTGYQVYRVDYAAAAALSGVADNDPAAFREAVQKVFPLV 252

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETY---------------------------RSEF 272
               D+N +  L+   +      +  +                             R   
Sbjct: 253 QVPEDRNAALNLDTGLSRKQTLAQYADAIGADAEGWPELITKLTAPGVPQSERDAARVNL 312

Query: 273 HKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
           +++L      ++  L ++  A +            + ++L I+   +  FS  +      
Sbjct: 313 NRKLALPFANLVLVLAALPFALRFGRT----LGVSLGVALVIAVAYYLLFSVGLTLAGLL 368

Query: 333 PYYIPI-LYLFLFCISSIFLLMIKK 356
           P    + ++L     +   L ++++
Sbjct: 369 PGLPELGVWLANIVFALGGLWLLRR 393


>gi|222148152|ref|YP_002549109.1| hypothetical protein Avi_1542 [Agrobacterium vitis S4]
 gi|221735140|gb|ACM36103.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 362

 Score = 88.9 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 114/356 (32%), Gaps = 12/356 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES-LNILLKISGYLIPT 59
           + +   Y L+    +     + +  I ++I   +     S + +S L  +  ++   +P 
Sbjct: 3   LNTLSRYFLKRYAITVFWFVIGVAAIIFLIDFSEVSGRFSDNEQSSLFGVFLLTLMRLPL 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +L    PF         L ++NR +EL+I    G S    + P L  A +L     +  N
Sbjct: 63  LLQQTVPFIALFSGMVTLITLNRRSELVIARAAGISVWQFMFPFLLGAFMLGCATSLLIN 122

Query: 120 IIEPKCRST----IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
            +    +        + S   + +   + +         +D  I  +    + TL    +
Sbjct: 123 PLAALGQKQAATLEAEYSDPGKASNNKNSVPWMRQITGKEDTIIGATSVLEDGTLLMQAV 182

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
               D Q        + +  L     +L D      +   +          +   +    
Sbjct: 183 FIHFDGQGRITSRQDARTAKLQDGYWLLKDVVE---TKPGETPKRETSAQVSTNLKQEFV 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
              + + +      L        +Y     +   ++FH  L+     V   LI+   + K
Sbjct: 240 QERLAQPDTVAFYELSQKIAVAKSY-GVSTKNLETQFHTLLSTPFLFVAMTLIAATVSLK 298

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            +   Q +    + +   IS  V +  + ++     +    P +  ++  I +  L
Sbjct: 299 FSRFNQSR---SVILGGIISGFVLYVATVLVKAFGSSGVVPPFVATWVPVIVATAL 351


>gi|163854870|ref|YP_001629168.1| hypothetical protein Bpet0565 [Bordetella petrii DSM 12804]
 gi|163258598|emb|CAP40897.1| conserved hypothetical protein [Bordetella petrii]
          Length = 392

 Score = 88.9 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/371 (12%), Positives = 115/371 (30%), Gaps = 25/371 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   Y+ R I RS  +  L ++ +     ++  ++ V     S+  LL +    +PT 
Sbjct: 1   MRTARRYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGDK-FSMLALLYMQALALPTR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  + +  EL+I+  +G S + L++ +  + + L I   +    
Sbjct: 60  LYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLRMLWLITLPLMIGASLLSEF 119

Query: 121 IEPKCRSTIKQLSAKAQ-----LALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           + P       + S   +       +   Y  +         +          N       
Sbjct: 120 VTPAAEIKSGEASLMFRGKASGTRMDSGYWFKEPTRDGGTRIINIAKLLADGNVEGVTLY 179

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP--------------ISKDISIM 221
                 Q   +  A +G+   D+   +L +                          ++ +
Sbjct: 180 EFKPGLQLTTMSTAATGAFTRDKL--VLKNVVETHIDDRAAQALADAKPPRTPPASVTKL 237

Query: 222 KFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
             +              VL     +L+ LL+   +  ++             ++++    
Sbjct: 238 PQRELDTTLSPERLLARVLTPERMSLNTLLD-YIDYLHHNQLDAGRQVVALWRKVSYPFT 296

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
            ++   I+          R+      +FI + +  G F      ++    + +   +  L
Sbjct: 297 LLVMITIAAPIGFM--QTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLSRWPPWLTAL 354

Query: 342 FLFCISSIFLL 352
                +++  L
Sbjct: 355 GPNVGATLLAL 365


>gi|163792837|ref|ZP_02186813.1| Predicted permease [alpha proteobacterium BAL199]
 gi|159181483|gb|EDP65995.1| Predicted permease [alpha proteobacterium BAL199]
          Length = 365

 Score = 88.9 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 100/355 (28%), Gaps = 16/355 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   YI R      L +   I+ I +++ +++ +   S        +L++++   +P + 
Sbjct: 6   TLSTYIGRQFVFWVLGTFAAIMAIVFLLDLIELLRRGSGKDGAHFGVLVEMAALKLPNMG 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF     +    T + R  EL++    G S    + P + +A+LL        N I
Sbjct: 66  QQILPFAVLFGSMLAFTRLTRTNELVVARAAGISVWQFLMPAIAVALLLGALKVGVVNPI 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYL-------EENLFFRLDDDLYIKISKYNPNNTLQGIF 174
                +    L          S++                  +   ++    +  L  + 
Sbjct: 126 SSVMTARFNVLEDTILRNRVDSFMTVGQGGLWIRERTESGQHVVHALAARQNDAELANVL 185

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           ++                +        +         + +              +    N
Sbjct: 186 VIRFGHNDEFLERIDARTARLGAGYWEL----HDTVVTSVKGRPDQRGSIRIPTRLTIQN 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                      +   L                 +R  +H  L   L  +   LI+   + 
Sbjct: 242 IQDSFASPETMSFWEL-PGFIRILENAGFSAVKHRLYWHALLASPLLLIAMVLIAATFSL 300

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
              L R+   +      L   F +++  S I+  +  +     +L  +     ++
Sbjct: 301 --RLTRRGGTLLWASSGLFTGFLLYFM-SDIVFALGLSARIPEVLAAWTPATVTM 352


>gi|126640321|ref|YP_001083305.1| hypothetical protein A1S_0228 [Acinetobacter baumannii ATCC 17978]
 gi|332874943|ref|ZP_08442794.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6014059]
 gi|332736886|gb|EGJ67862.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6014059]
          Length = 341

 Score = 88.9 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/330 (14%), Positives = 110/330 (33%), Gaps = 14/330 (4%)

Query: 27  AWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTEL 86
               ++++   + +      +IL  I GY +P  L ++ P  F +    V   +  + E+
Sbjct: 1   MMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLTLILPLGFFIGLMLVFGRLYVDHEM 60

Query: 87  LIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLE 146
            +++ +G SR  L + ++ + ++  +   +    + P      ++L+    +   F  + 
Sbjct: 61  AVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWMTPWGLREFEKLTTTQAVRTGFDLVR 120

Query: 147 ENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDR------QA 200
              F           S       L+ IF       +        +               
Sbjct: 121 PREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAKEGKPDVMILAKEATRVEVANDTANV 180

Query: 201 IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNY 260
           + L  G  +   P     +  +F+SY L+ E+           +   +  L    N+P  
Sbjct: 181 VDLVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKDVKFESGDVEALSTSKLFSKANDPV- 239

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
                   RSE   RL      +I  ++S+  ++      +  ++ P     +    +  
Sbjct: 240 -------VRSELGWRLFGPFTIIIALMLSVALSEVSPRQGRYYRLIPSIFIFASLIVLMI 292

Query: 321 GFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                I K E + +  P+  L     +++F
Sbjct: 293 AIKTRISKGELDIWAYPVALLVYAIAAALF 322


>gi|218460846|ref|ZP_03500937.1| putative permease protein [Rhizobium etli Kim 5]
          Length = 362

 Score = 88.9 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 114/353 (32%), Gaps = 10/353 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y  R    +     +    IA+++   +    +S     ++   + ++   +P +L
Sbjct: 5   TLSRYFFRRYLATTAWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLPLIL 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF        VL  +NR  EL++    G S    + P +  ++ L +    + N +
Sbjct: 65  QQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFVAGSLALGVLTTTALNPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
               +     + +  +           + +         +          G  +VD+   
Sbjct: 125 AAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLVDAVLI 184

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                  +    +  D     L DG       + +    +  +  ++Q  +      V +
Sbjct: 185 HFDS---SGRVIMRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241

Query: 242 ---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A +    F L+             +   ++F+  L+Q L  V   LI+   + K + 
Sbjct: 242 RLTAPETIGFFDLSNRIAAAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSLKFSR 301

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             Q +    + +   +S  + +  + ++     +    P +  ++  + ++ L
Sbjct: 302 FNQSR---SVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALAL 351


>gi|144900091|emb|CAM76955.1| permease YjgP/YjgQ family [Magnetospirillum gryphiswaldense MSR-1]
          Length = 367

 Score = 88.9 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 106/354 (29%), Gaps = 8/354 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPTVL 61
           +   YI R    +F      I+ + ++  I++ I   +      +  L+ ++   +P ++
Sbjct: 6   TLSAYIGRQFLLAFASVLAVILGVVFLFDIIELIRRAAGRGDLGVFNLVAMALLKLPQMM 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V PF   +        + R  EL++  + G S    + PVL L   L +    + N +
Sbjct: 66  HTVLPFAVMIGAMVAFWRLTRTHELVVARSAGISAWQFLTPVLVLVAGLGVIELTAFNPM 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
                   +++  +  L  T +     +   L +    +    + +   Q +  ++ R  
Sbjct: 126 AATMYGRFQKMEDEILLGKTSALDVSEMGLWLREGDAQRQIVLHADQVQQELLTLNLRGV 185

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKS----PISKDISIMKFKSYTLQTESANSST 237
               +   +  +  L   +  L DG +           K            +        
Sbjct: 186 HVFVLNAEEHFTRRLSAASGRLADGVLELTDVWEMEGGKSSVHHPALKLATELTLERVHD 245

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   +   L                 +R  F   L+  L      L++ V + +  
Sbjct: 246 NFASPETMSFWQL-PAFITFFEKAGFAATKHRMHFQSLLSSPLLYCAMVLVAAVFSLRP- 303

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              +   +         +    + F+ II+    +      L  +   + +  +
Sbjct: 304 -NMRAGGLLMRVGGGVAAGFGIYFFNKIIYAFGLSATLPQGLAAWSPALVAGLI 356


>gi|323525103|ref|YP_004227256.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1001]
 gi|323382105|gb|ADX54196.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1001]
          Length = 382

 Score = 88.9 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/375 (10%), Positives = 109/375 (29%), Gaps = 25/375 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R +  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRIYERYFARQVYLTFIFILFAFSGLFFFFDLINELNSVGHGNYKFQYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L    ++   +
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVFLTYLIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL---------DDDLYIKISKYNPNNTLQ 171
           I P      +++  +A  +   S  +  ++ +              ++ + +  P+ T+ 
Sbjct: 121 IGPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTLTARADGEQVTRFVNVGELRPDATIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-----------SPISKDISI 220
            + I +                +        L      +              ++     
Sbjct: 181 NVRIYEFDSKFRLSNVRIAKSGVYQPPGHWQLTGVTDTQLIDVPPPSGTPADALNPVYRA 240

Query: 221 MKFKSYTLQTE---SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
            +            +    +++L + D+   F L     +     +  + Y     ++L 
Sbjct: 241 KQVVLPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTENHQDTQRYEIALWRKLL 300

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
                 +  ++S+  A      R       +F  + +        +   H    N +  P
Sbjct: 301 YPFAVFVMLVLSLPFAYL--HTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358

Query: 338 ILYLFLFCISSIFLL 352
           +       +  +  L
Sbjct: 359 LTAATPGLVYLVLGL 373


>gi|298369121|ref|ZP_06980439.1| permease, YjgP/YjgQ family [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298283124|gb|EFI24611.1| permease, YjgP/YjgQ family [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 371

 Score = 88.9 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/365 (10%), Positives = 140/365 (38%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   ++ +  + +   + ++ +    Q +  +   +    +++ +  + G+ +  + P
Sbjct: 2   IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAVDAVAALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFALLIAVMQLWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F    +  D +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNSLGKRSDRVYFVETFDTESGIMKNLFLRELD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  ++  +++ + L +G  +   P   D + + F+  ++   +     
Sbjct: 182 KNGNDNIIFAKEGNFALTDNKRTLELRNGYRYSGKPGRADYNQVSFEHLSMIISTTPKIV 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +        + L                 Y++E   RL+  +  ++  ++++      
Sbjct: 242 DPIAHRRTIPTAKLF----------GSDNPQYQAELMWRLSLPISVLLLSMLAVPL---S 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G +++   +   +  ++  +L + +  I    +L+ 
Sbjct: 289 YFNPRTGHTYNILIAIGMFLIYQNGLTFLRDAVEDGKIHFWFGMLPMHILMIVIAVVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|310766279|gb|ADP11229.1| Putative permease [Erwinia sp. Ejp617]
          Length = 366

 Score = 88.9 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 119/341 (34%), Gaps = 15/341 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLTLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  +  L+K  + L +  ++   ++   + 
Sbjct: 62  LILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKAAMILMLFTALLAAVNVGWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+     + L    F +  D   +   +    +T   +F+   R   
Sbjct: 122 PWSSRYQNEVMQNAKANPGAAALAAGQFQQSGDGQSVLFIENVKGSTFSNVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  AQ G ++      Q + L+ G     + + +D  I  FK+Y         + 
Sbjct: 182 NARPSVVVAQQGHMEQRVDGSQIVTLDSGTRFEGTALLRDFRITDFKNYQAIIGHQAVTL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               +   +L  L + +  +          +RSE H RLT     +I  L+ +  +    
Sbjct: 242 DPNDSEQMSLDTLWHSDKPD----------FRSELHWRLTLVFSVLIMALMVVPLSVVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
              +   + P  +   + F +         K   +P     
Sbjct: 292 RQGRVLSMLPAMLLYLVFFLLQSSLRSSGSKGRIDPAIAMW 332


>gi|53718605|ref|YP_107591.1| putative permease [Burkholderia pseudomallei K96243]
 gi|167814687|ref|ZP_02446367.1| putative permease protein [Burkholderia pseudomallei 91]
 gi|167909936|ref|ZP_02497027.1| putative permease protein [Burkholderia pseudomallei 112]
 gi|52209019|emb|CAH34959.1| putative permease protein [Burkholderia pseudomallei K96243]
          Length = 383

 Score = 88.9 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/381 (11%), Positives = 113/381 (29%), Gaps = 28/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYERYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQAPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ ++ + + + I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           I P      +++  +A  +   +     ++                ++ +   +P++T+ 
Sbjct: 121 IGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT---- 227
            + I +       +                +L D    + + ++ + +     +      
Sbjct: 181 DVRIYEFDSKFNLQNVRIAKRGHYQPPGHWLLTDVTDTQLTSLAGNGTASPVDTLNPVYR 240

Query: 228 ------------LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
                               S +++     +L  L      +     +  + Y     ++
Sbjct: 241 AQQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFR-YIQHLKENQQDTQRYDIALWRK 299

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L       +  ++S+  A                I L +SF +F      I  +  N + 
Sbjct: 300 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWP 357

Query: 336 IPILYLFLFCISSIFLLMIKK 356
            P+      CI     L   K
Sbjct: 358 APLTAALPGCIYLALGLFALK 378


>gi|84622418|ref|YP_449790.1| hypothetical protein XOO_0761 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188578607|ref|YP_001915536.1| putative permease, YjgP/YjgQ family [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58425052|gb|AAW74089.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366358|dbj|BAE67516.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188523059|gb|ACD61004.1| putative permease, YjgP/YjgQ family [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 360

 Score = 88.9 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 126/357 (35%), Gaps = 15/357 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + + + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPTRMLRPLLMLVVPVVVVIGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T + +   A  ++  + LE   F  L D   + +   + +    G   +  + 
Sbjct: 121 LGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSDGGVVYMQTISADGKGLGKIFLQRQQ 180

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESANS 235
                +  A  G++       + + L+DG            D  +MKF S  +       
Sbjct: 181 NDRIDVVTADRGALFFEGKTDRYLHLDDGYRTEGPAGGATLDYRLMKFASSDIALPDRTR 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                       + LL+          +     R++ H+RL   L  + F ++++  +  
Sbjct: 241 LHDANDPEVMWTTQLLS----------DERPAARAQLHERLAPPLLALAFAMLTLPLSRS 290

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
               ++  +I   F++  +   +    +  I   +                 +++  
Sbjct: 291 APRQQRYGRIMLAFLAYMVGTNLMIVGTQWIANGKAPAALGLWWLTLPLLAVAVWAY 347


>gi|148261610|ref|YP_001235737.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
 gi|326405100|ref|YP_004285182.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
 gi|146403291|gb|ABQ31818.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
 gi|325051962|dbj|BAJ82300.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
          Length = 376

 Score = 88.9 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/345 (11%), Positives = 87/345 (25%), Gaps = 12/345 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTVL 61
           +  LYI R    + +     +  I  +   L  +   +   + +   +L +    +P + 
Sbjct: 12  TLSLYIGRRFLGAVVAMQAGLTAIGALFDFLDLLRQSADKPQATFWRMLALEVLRVPWLG 71

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +        + R++EL++   TGTS    +   +  A L+ +    + + I
Sbjct: 72  MQILPFAVLLGGIFAFWRLTRSSELVVARATGTSVWQFLAVPVAGAALIGVLATTAGSPI 131

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
                +  + L +      +     +     L                   + +     T
Sbjct: 132 SAIMFARAEVLYSTYLGVDSGPLSLQGGQLWLRQADDAGGKGGIAILHADAVHLHGKVLT 191

Query: 182 QTHKIYYAQSGSIDLDRQAI----ILNDGEVH----RKSPISKDISIMKFKSYTLQTESA 233
             H      +    L  +       L  G       R      +   +            
Sbjct: 192 TGHITVLRLTAQTTLQERIEAARGQLEPGGWRLESARILTPDGEPRAVSALRIPTTLTVG 251

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                    +  +   L                 +   F   L   L      L++  A 
Sbjct: 252 RVQESFASPSALSFWAL-PGFIRLLRRSGFSATQHELAFQSLLALPLLCATMVLVA--AG 308

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
                 R+   I  I   +   F +F          +     + +
Sbjct: 309 FSMRPSRRGGAIQMIGAGVGCGFLLFMLSEVAAQLGKSGALPVGL 353


>gi|225619709|ref|YP_002720966.1| permease YjgP/YjgQ [Brachyspira hyodysenteriae WA1]
 gi|225214528|gb|ACN83262.1| permease YjgP/YjgQ [Brachyspira hyodysenteriae WA1]
          Length = 417

 Score = 88.9 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/418 (14%), Positives = 127/418 (30%), Gaps = 61/418 (14%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI+      FL   LF  FI  +  + + I L+ ++   L + L++  Y++P  
Sbjct: 1   MKKINKYIILETIGPFLAGILFFTFIFVIQLLPELIRLIVNNGAPLFMSLEVFVYMLPFN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    M +      ++ + E++++   G   + +  P++ L +   IF     N+
Sbjct: 61  IAITIPMSILMASIIGYGRLSSDNEIIVMRALGFPHMRIYMPIIILGVFTFIFSLFFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I  +     + L +          + +  F  + D      SKY  + ++  + I D   
Sbjct: 121 IMSESNYRYRALISYMVNIKPSIAVGKLEFSDIPDMGLSIGSKYADDTSMSNVVIYDRS- 179

Query: 181 TQTHKIYYAQSGSIDLDRQAI-----ILNDGEVHRKSPISKDIS-IMKFKSYTLQT--ES 232
             T ++  A+ G    +          L DG V          +    F S  +      
Sbjct: 180 -DTKRVITAKYGLWKNNEANAQVVTLTLYDGVVQEMPGYGFISNDYTVFDSMDINIVRNV 238

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET------------------------- 267
           +  S+      +     ++           + +                           
Sbjct: 239 STLSSHERGLREMPAWKIMEKINQTKIDADKSVNEQINGMIVNAYNNIDTNAVSITSFSN 298

Query: 268 -------------------------YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
                                    Y  EFHK ++     +   LI            + 
Sbjct: 299 EYIQTNSAELTSLREKAMEEAVPYFYYVEFHKFISIPAACLFMVLIGAPLGIVGKRSGKG 358

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  I + I + +      I    + +P  I + +  +   +    LMI+  +++
Sbjct: 359 FGFGLSVIVVVIYYLLITAAELIAGGKKVSP-LIAMWFPNIVLAAMGSFLMIRSFFSR 415


>gi|167645642|ref|YP_001683305.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
 gi|167348072|gb|ABZ70807.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
          Length = 354

 Score = 88.9 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 108/356 (30%), Gaps = 11/356 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LY+LR +G   L + L +  I  ++ +L+    +         +L  +    P +
Sbjct: 1   MKI-QLYVLRTVGTRVLGAGLILFSILQILDLLEVTTDIIDRGLGTAGVLYYAALRSPRL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P           + + R   ++ +  TG S   ++   L +  L+    F    I
Sbjct: 60  VEQVAPLATLAGGLFAFSQLARENAIIAMRATGISAYRIVGMALPVVFLVMALDFSCAQI 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    +     +A        +     FR  DDL I         TL  + I     
Sbjct: 120 IAPRTDP-VLADWWQATTPAAERKVPGPRSFRAGDDLVIAAGASADGGTLNAVKIYRRDK 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       +         L    + R      ++      S+       +   +  
Sbjct: 179 IGRLIERIEAPSASYNSGGGWTLAKPVIVRFKGEQVNVVPAAQLSWPSPLHRQDVQALFA 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            +     +       +           Y + F          ++  L+S   A       
Sbjct: 239 DSPVPTAATARRALLS--GGGDRPAAFYETRFLSAFAGPFAALVMLLLSAPVALANFRSG 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLL 352
           Q   +    ++  + F V  G   ++  + +     PIL ++    +F   +++ L
Sbjct: 297 QGAGLLAGGLAAGLLFLVVNG---MLSALGEGGSLSPILAVWGGPVIFAALAVYAL 349


>gi|148556806|ref|YP_001264388.1| permease YjgP/YjgQ family protein [Sphingomonas wittichii RW1]
 gi|148501996|gb|ABQ70250.1| permease YjgP/YjgQ family protein [Sphingomonas wittichii RW1]
          Length = 400

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 126/359 (35%), Gaps = 11/359 (3%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R I    L + +    +  + ++L+  + V S    ++++ ++   LIP  + + 
Sbjct: 8   DRYVARLIATPLLATLVIAAMLLTLDKMLRLFDFVVSEGGPVSVVWRMLANLIPEYMSLG 67

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +        +  ++EL +    G S   L++   + A+ L++        I+P 
Sbjct: 68  IPIGLMLGCLLAFRKLALSSELDVFRAVGMSYGRLLRVPYYYAVALALLNLAIVGFIQPY 127

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS-KYNPNNTLQGIFIVDSRDTQT 183
            R   + L  + +     + ++   F +L   + I++         L GIF++       
Sbjct: 128 SRYAYEGLRFELRSGALGASIKVGEFTKLGKRMTIRVESSREGGRELSGIFVMTESKDGK 187

Query: 184 HKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--- 236
                A+ G      D D   + L  G +   +P  K+  +++F  + L  +        
Sbjct: 188 SLAVTAEHGQFLATDDPDTIILRLQKGVLVHDAPQFKEPRVLQFVGHDLPIDLPKMEAFR 247

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +  +  +  L+    +      +    +RSEFH RL +     +  ++++  A   
Sbjct: 248 QRGGRDLEMTMPELV-VTAHQATTPAKQRAQFRSEFHFRLVEVATMFLLPMLALALAVPP 306

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              R    +      + I                     +  L++     +++   M +
Sbjct: 307 K--RSSSALGVFLSIVMIVTQHKINEYAASVAALGRIDPLIALWVPFLAFAALVWWMYR 363


>gi|332286756|ref|YP_004418667.1| hypothetical protein PT7_3503 [Pusillimonas sp. T7-7]
 gi|330430709|gb|AEC22043.1| hypothetical protein PT7_3503 [Pusillimonas sp. T7-7]
          Length = 392

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/356 (11%), Positives = 114/356 (32%), Gaps = 23/356 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   Y+ + I RS ++  + ++ +     +++ ++ +S+   +L  L  +    +PT 
Sbjct: 1   MRTARRYLAKEIYRSTIVVLMALIGLFTFFALIEELDNLSNQ-FTLLNLFYMQALALPTT 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  + +  EL+I+  +G S + L+  +  + I L    F+   I
Sbjct: 60  LYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMKLLTMLWIVTIPLVFGAFLLSEI 119

Query: 121 IEPKCRSTIKQLSAKAQLA----LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           I P       + S             S               I I +   +  +  I + 
Sbjct: 120 ITPAAEIKSSEASLTLLGKAGGGRLNSGYWFKESDEQGGTRIINIGQLKSSGNVADITLY 179

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS--------------KDISIMK 222
           + +        ++ +         ++L D +    +  S                +  + 
Sbjct: 180 EFK-NGQELATFSTAKQGQFADGTLVLGDVKQTSINADSLSTLANAVQPDTPLTRLETLP 238

Query: 223 FKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
            ++             +L     ++  LL+   +         +       +++      
Sbjct: 239 ERTLKTSLTPERLIARILTPERMSIRVLLD-YIDYLENNNLQTDRQIVALWRKMAYPFTL 297

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
           ++   I+   +      R+      +F+ + +  G F      ++    N +   +
Sbjct: 298 LVMITIAAPISFM--QTRRGGVGSKVFVGILLGVGFFMLNQLALNVGMLNQWAPWV 351


>gi|307946742|ref|ZP_07662077.1| permease [Roseibium sp. TrichSKD4]
 gi|307770406|gb|EFO29632.1| permease [Roseibium sp. TrichSKD4]
          Length = 364

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/356 (11%), Positives = 108/356 (30%), Gaps = 13/356 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
           ++  +Y      +S L   L    + ++  +L+ +         ++  +  IS   +P +
Sbjct: 5   RTLAIYFSARFFKSILGLFLLAAVLIFLFDVLELVRRGGDQEGFTVVRVALISILRVPLL 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V PF     +     +++R  EL++   +G S      P + + +++     ++ N 
Sbjct: 65  LEQVIPFAVLFGSILAFVTLSRALELVVARASGISVWQFAAPAVVVGLIIGTLSVVAYNP 124

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----LYIKISKYNPNNTLQGIFI 175
           +    +    + +A    +     L+      +  D       +   +     T      
Sbjct: 125 LAVWLQHRSDEAAAGLFGSEQSFLLQTTQDVWVRQDGLDGESVLLAKQLLDGGTRLLDVT 184

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           + + D +       ++ +  L  Q   L D  V+      +     +  +Y     +   
Sbjct: 185 IFAFDKEGSFKERVEAATARLGDQIWFLEDVTVYTTERDPQQYGRYEVSTY---LTATEV 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
              +      +   L                 Y  ++   L + L      +I+   +  
Sbjct: 242 RESIGSPESISFWSLPR-FIELARNAGLPAYRYTLQYQTLLARPLLLTAMIIIAAAVSL- 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             + R       I   +   F ++   S +           PI+  +   I  + +
Sbjct: 300 -RVSRFGGLGSMILGGIVAGFVLY-VLSELAKDFGGAGIVPPIVAAWAPGIFGVLM 353


>gi|146328919|ref|YP_001210037.1| hypothetical protein DNO_1153 [Dichelobacter nodosus VCS1703A]
 gi|146232389|gb|ABQ13367.1| conserved hypothetical membrane protein [Dichelobacter nodosus
           VCS1703A]
          Length = 349

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 110/356 (30%), Gaps = 10/356 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             ++ +I R I    ++  +F++ I +++Q  +  + +        ++L I    +P  +
Sbjct: 3   TLYDRHIARIITAHIIIVLIFLLGIDFLVQSAEESDNIGRGNYHFWLMLSILLLNVPARI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    + T   L  +N+  EL +I  +G SR+ L    L +A  L   L +     
Sbjct: 63  VEFMPAAVLVGTITALGQLNKQQELTVIRTSGISRLRLSLSGLMIAFFLGCALIVLAEYG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
               ++  + L   A                 D+ +YI               I   R  
Sbjct: 123 VAPAQNRAQWLHHHALNTTAPQTDHGIWLRDGDNIVYIGA----FQADGSLEKIRFYRPH 178

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +          +  +     + ++  +   S  S  I+      +  +   A  + ++  
Sbjct: 179 EHDLEIQESQRATFMQTHWQLDDNRALCIGSQSSMPITPTT--HWQNRILPATIAQLMQL 236

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            N   L  L               +    +  +R+   +  +   ++++         R+
Sbjct: 237 KNAYTLRELY-TITGFLRAHQLNDQQMSLKLWQRIFLPITTITMVILALPCVFN---TRR 292

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 + I + +    +     +        +   +  L    I ++  L +  +
Sbjct: 293 DGNGARLVIGILLGASYYVVQGIVTKLGLLLHWSTALSALLPILIFALPPLFLLTR 348


>gi|332524894|ref|ZP_08401081.1| putative transmembrane protein [Rubrivivax benzoatilyticus JA2]
 gi|332108190|gb|EGJ09414.1| putative transmembrane protein [Rubrivivax benzoatilyticus JA2]
          Length = 358

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/348 (13%), Positives = 114/348 (32%), Gaps = 13/348 (3%)

Query: 10  RCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCF 69
           R + R+F  + + I+ I   + +++ I   +    +   ++ + GY+    LP +     
Sbjct: 3   RELARTFGATLVVILTIVLTMFLIRTIGQAAGGVVAPQDVVLLLGYVALGHLPTMLALSL 62

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTI 129
            +     L  M R++E++I    G      ++PVL  +  + + +      + P      
Sbjct: 63  FVAVVVTLGRMYRDSEMVIWFAGGIGLSRFVRPVLRTSWPVLLVIAALLLFVWPWGNRNS 122

Query: 130 KQLSAKAQLALTFSYLEE-NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYY 188
            +L  + +     S +         D      I +            + ++  +T  +  
Sbjct: 123 LELRQRYEQRSDLSRVTPGVFQTSSDGSRVFFIERDTREGADARNVFIVAQTGETESVTS 182

Query: 189 AQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
           A+SG ++   D + ++L  G+ +     + + +   F++Y +  +   +     +     
Sbjct: 183 ARSGRLERDGDDRFVVLERGQRNDVDLKTGEKAQSSFETYRVLADEKRAREAERQPPKAM 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
            +  L  +P  PN           E   R           L+ I  A           + 
Sbjct: 243 DTLDLLQDPTRPNQG---------ELTWRFGLLTGAGNMLLLGIGLAATNPRRASNWNLL 293

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLM 353
              +   + F +       +          + +++   F I+   L  
Sbjct: 294 LALLGFVVYFNLINLSQAWVASGRLGMGAALAVVHGSAFAIALGLLWW 341


>gi|88810478|ref|ZP_01125735.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
 gi|88792108|gb|EAR23218.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
          Length = 357

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/319 (11%), Positives = 106/319 (33%), Gaps = 19/319 (5%)

Query: 30  IQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLII 89
            ++++ +   +S     N+L  + G      L  V P  F +     +  + R++E+  +
Sbjct: 23  NRLIRFLADAASGDIPANLLFTLLGLKALANLGTVLPASFFLAIVMAMGRLYRDSEMAAL 82

Query: 90  DNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENL 149
              G     L + +L LA+ L++ +     +  P    T +++ A+AQ +     +    
Sbjct: 83  AACGVGPRELCRALLLLAVPLALLVGYLSLVFGPWAEGTAQRIVAEAQQSNRLQGVRPGR 142

Query: 150 FFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDR----QAIILND 205
           F  L     +          +       +       +  A     ++D     + ++L +
Sbjct: 143 FLDLGAGSAVAYVASIDAEGIMHGIFARAEQDGQPVLIAAARARREVDPETGARFLVLLN 202

Query: 206 GEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELL 265
           G+ ++  P  +   +++F  + L    +  +      +      L +             
Sbjct: 203 GQRYQGVPGQRAWRVIRFGQHGLSLGGSEPAQFSAARDGLTSWQLWH----------SED 252

Query: 266 ETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYI 325
               ++   RL+  L  ++  L ++          +  +   +  ++ +    F      
Sbjct: 253 RAAWAQLQWRLSMPLVTLVLTLFALPL---SKSAPRDGRYAKLLSAVLVYVLYFNLLKVA 309

Query: 326 IHKI--EQNPYYIPILYLF 342
              +   + P  + + ++ 
Sbjct: 310 QGLLSQGRYPVGLGLWWVH 328


>gi|189500558|ref|YP_001960028.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
 gi|189495999|gb|ACE04547.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
          Length = 441

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 78/427 (18%), Positives = 140/427 (32%), Gaps = 73/427 (17%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL+     FL S + I+FI  +  + +  +  +       ++ ++    +  +
Sbjct: 1   MKILYRYILKEHIGPFLFSFITILFILTLQFVTRFFDRFAGKDLGFIVIAELISLQVAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T     ++  ++E+ ++   G S   L+ PVL  A LL+  L    NI
Sbjct: 61  VVLALPMAVLVATLIAFGNLANSSEMTVMRAGGVSLYRLVFPVLVAAALLTGILERFNNI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY-NPNNTLQGIFIVDSR 179
           + P+     K L      A     L EN F  L D   I + +  +  NTL+GI I +  
Sbjct: 121 VLPEANYQAKVLLRDITRAKPTFGLTENAFSGLVDGYSILVREEGSDPNTLEGITIYERG 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAII----LNDGEVHRKSPISK--------DISIMKFKSYT 227
             +   +  A+SG I            L +G++H+     K        +     F S  
Sbjct: 181 SNEDKAVITAESGHIAFTADYHYLILTLFNGQMHKMQGQGKEEYRVMTFEKHRFVFSSTG 240

Query: 228 LQTESANSSTIVLKANDQNLSFL----------------------------LNPNPNNPN 259
              E    + I     + +   L                            +N     P 
Sbjct: 241 YGFERTEGNEIRRGDRELSAEQLFGMGMKFRKRMLDATVLIDKSIEREQKAINARSVQPE 300

Query: 260 YRPELLETY----RSEFHKRLTQWLFPV---------------------------IFGLI 288
            R    + Y    ++E  KR+ + L  V                            F  I
Sbjct: 301 NRGAESDRYAGINKAEAEKRVDKMLVAVDREIEHIEQSQGMYNKYMVEFHKKYALSFACI 360

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
             V       V  ++    I   LS+ F + +W    +  K+       P + ++L    
Sbjct: 361 VFVLVGAPLGVLAKRGGFGIGAGLSLLFFILYWALLIMGEKLSDRGLLDPGISMWLANAV 420

Query: 348 SIFLLMI 354
            + +  I
Sbjct: 421 MLLIGFI 427


>gi|241203948|ref|YP_002975044.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857838|gb|ACS55505.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 362

 Score = 88.5 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/354 (11%), Positives = 114/354 (32%), Gaps = 12/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y  R    +     + +  I++++   +    +S     ++   + ++   +P +L
Sbjct: 5   TLSRYFFRRYLVTTGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGVLMTAVRLPLIL 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF        VL  +NR  EL++    G S    + P +  +++L +    + N +
Sbjct: 65  QQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLVLGLLTMAALNPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD----DDLYIKISKYNPNNTLQGIFIVD 177
               +     + +  +           + +       DD+ I       + T     ++ 
Sbjct: 125 AAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQESGTKLIDAVLI 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D+    I    + +  L+     LN+    +     +              +      
Sbjct: 185 HFDSSGQVILRQDAATAKLEDGYWQLNNVVERK---PGEIPVRKASVQLRTNLKQDFVQE 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +          L N      ++     +   ++F+  L+Q L  V    I+   + K +
Sbjct: 242 RLTAPETIGFFDLSNRIAAAKSF-GISTKALETQFNSLLSQPLLLVAMTFIAATVSLKFS 300

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              Q +    + +   +S  + +  + ++     +    P +  ++  + ++ L
Sbjct: 301 RFNQSR---SVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALAL 351


>gi|327188011|gb|EGE55241.1| putative permease protein [Rhizobium etli CNPAF512]
          Length = 362

 Score = 88.5 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 109/353 (30%), Gaps = 10/353 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y  R    +     +    IA+++   +    +S     ++   + ++   +P +L
Sbjct: 5   TLSRYFFRRYLATTGWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLPLIL 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF        VL  +NR  EL++    G S    + P +  ++ L +    + N +
Sbjct: 65  QQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGVLTTTALNPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
               +     + +  +           + +                            D 
Sbjct: 125 AAWGQRQALLVESDWRGENAVLRKAPQIPWLRQ---ISGRDDVIIGAQTVQENGTKLIDA 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                  +    +  D     L DG       + +    +  +  ++Q  +      V +
Sbjct: 182 VLIHFDSSGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241

Query: 242 ---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A +    F L+             +   ++F+  L+Q L  V   LI+   + K + 
Sbjct: 242 RLTAPETIGFFDLSNRIAAAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSLKFSR 301

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             Q +    + +   +S  + +  + ++     +    P +  ++  + ++ L
Sbjct: 302 FNQSR---SVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALAL 351


>gi|86357091|ref|YP_468983.1| putative permease protein [Rhizobium etli CFN 42]
 gi|86281193|gb|ABC90256.1| putative permease protein [Rhizobium etli CFN 42]
          Length = 362

 Score = 88.5 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 110/353 (31%), Gaps = 10/353 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y  R    +     +    IA+++   +    +S     ++   + ++   +P +L
Sbjct: 5   TLSRYFFRRYLATTGWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLPLIL 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF        VL  +NR  EL++    G S    + P +  +++L +    + N +
Sbjct: 65  QQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLVLGVLTTTALNPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
               +     + +  +           + +                            D 
Sbjct: 125 AAWGQRQALLVESDWRGENAVLRKAPQIPWLRQ---ISGRDDVIIGAQTVQENGTKLIDA 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                  +    +  D     L DG       + +    +  +  ++Q  +      V +
Sbjct: 182 VLIHFDSSGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241

Query: 242 ---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A +    F L+             +   ++F+  L+Q L  V   LI+   + K + 
Sbjct: 242 RLTAPETIGFFDLSNRIAAAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSLKFSR 301

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             Q +    + +   +S  + +  + ++     +    P +  ++  + ++ L
Sbjct: 302 FNQSR---SVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALAL 351


>gi|292572537|gb|ADE30452.1| Putative permease [Rickettsia prowazekii Rp22]
          Length = 377

 Score = 88.5 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 156/363 (42%), Gaps = 11/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++PT+
Sbjct: 18  MLLYRKYFIKNILPLLIIVTFSVTSIVWITQILKLLYLF-DKGIKVIDFFNLVVLVLPTL 76

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G + I L  P L++A+ + +  +   + 
Sbjct: 77  LFILLPIITVIAVLYIYNNLKVERQLIILQTSGVNNIQLALPALYVALTIMLLAYYISST 136

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K      +     S +EE  F ++  ++ + I K    N + GI I D+R+
Sbjct: 137 ILPLSHINLKSRLNFIKNNYISSMIEEKTFNKITKNITVFIDKKLTGNIMNGIIIFDNRN 196

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANSSTIV 239
                + +A SG++++     I    +  R+    + +++ + F S  ++ ++ +S T  
Sbjct: 197 ADNPSVVFAGSGTLNIYGNNPIFELNKGLRQEYDANGNLTQLTFDSLMIKLQNNSSLTSQ 256

Query: 240 L-----KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 +AN+  +S LL P+ +    +        +E H+R+   L+  +   +++    
Sbjct: 257 RTQNNKEANEYYISELLTPSHDLVITKKI---KLIAEAHQRIIWPLYNFVLPCLALAVFL 313

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +    ++   +  +F +L++ F     F  + +   +N  +I   Y  L    +I L ++
Sbjct: 314 RYPYSKKTTFMPVLFSALTVLFVTAIHF-ILQNFASKNLDFIFACYFNLLVALTIGLYLL 372

Query: 355 KKK 357
             K
Sbjct: 373 VHK 375


>gi|121595376|ref|YP_987272.1| permease [Acidovorax sp. JS42]
 gi|120607456|gb|ABM43196.1| permease YjgP/YjgQ family protein [Acidovorax sp. JS42]
          Length = 355

 Score = 88.1 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 108/330 (32%), Gaps = 5/330 (1%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+ R +G   L+  L I  +  V+++L     V    +    ++      +P  L M  P
Sbjct: 8   YLRRRVGTQILVLLLVITALMQVLELLDVTTDVLKRDQGFIGIVYYGLLRLPAELVMALP 67

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               + T   L +M RN E+  +   G S + L+  +L LA +L++  F+  + + P   
Sbjct: 68  PAVLLGTLMALANMARNLEIATMRTAGLSMMRLLGYLLPLAAVLAVAQFVLSDHVLPPAE 127

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           + +K+       A   +       +       + +   +P+        +  RD +    
Sbjct: 128 NGLKEWW----SASAPADDTPTKRWAHTSGGTVSMESTSPDGRRLIDVRLYVRDDRGLIQ 183

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
               +     D Q                 +   +  +++       +   + +   + +
Sbjct: 184 SRLTATEAQWDGQVWRFKGVNEFVYGDRRVERIQVAERAWDTNLRPEDVLRLDVARPNLS 243

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
            + +L           +    Y+S  ++     L   +  L+++  A             
Sbjct: 244 TA-MLAEVIAGTRTGTQPHRYYQSVLYRSYAAPLAIFVMLLLALPTAVSLPRGTGGGSRM 302

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
            + + L + F +  G    +    + P  +
Sbjct: 303 AMALILGLGFLLCDGIVAALGLAARWPPLV 332


>gi|126441903|ref|YP_001058063.1| hypothetical protein BURPS668_1013 [Burkholderia pseudomallei 668]
 gi|126221396|gb|ABN84902.1| putative membrane protein [Burkholderia pseudomallei 668]
          Length = 383

 Score = 88.1 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/381 (11%), Positives = 113/381 (29%), Gaps = 28/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYERYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQAPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ ++ + + + I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           I P      +++  +A  +   +     ++                ++ +   +P++T+ 
Sbjct: 121 IGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT---- 227
            + I +       +                +L D    + + ++ + +     +      
Sbjct: 181 DVRIYEFDSKFNLQNVRIAKRGHYQPPGHWLLTDVTDTQLTSLAGNGAASPVDTLNPVYR 240

Query: 228 ------------LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
                               S +++     +L  L      +     +  + Y     ++
Sbjct: 241 AQQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFR-YIQHLKENQQDTQRYDIALWRK 299

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L       +  ++S+  A                I L +SF +F      I  +  N + 
Sbjct: 300 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWP 357

Query: 336 IPILYLFLFCISSIFLLMIKK 356
            P+      CI     L   K
Sbjct: 358 APLTAALPGCIYLALGLFALK 378


>gi|238028370|ref|YP_002912601.1| permease [Burkholderia glumae BGR1]
 gi|237877564|gb|ACR29897.1| Permease, putative [Burkholderia glumae BGR1]
          Length = 363

 Score = 88.1 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 125/364 (34%), Gaps = 16/364 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S   S   +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGQVSPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +    VLT   R++E+++   +G S   LI+P+   +  + + +     +  
Sbjct: 62  MILVGTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIRPIGVFSTPIVLLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F        +   +    +  +   +  +   Q
Sbjct: 122 PWSNQQSKLIKARFQQRDEVSLLAPGQFRESTATHRVFFIEKMSPDQARVQNVFVTTTEQ 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                      +  +     + I+L +G  +   P   +  IM+F+ Y ++ +S    T 
Sbjct: 182 GKVNIVVSQTGRVETEKNGDRFIVLENGRRYDGVPGQPNFKIMQFERYGVKIQSKQVVTQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRA 297
               +   L  L +P   N            +EF  R    L  +   +++I  A     
Sbjct: 242 PTTTSTSTLELLRDPTKENL-----------AEFAWRAGLPLIAINLMILAIPLAYQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    S I          + +L+L +  I +    +  + 
Sbjct: 291 RGRTVNLVMAVLIYLTYSNLLNVVQSQIERGKLPFGVGLVVLHLVVAGIVAFLFWLRVRN 350

Query: 358 YTKI 361
              I
Sbjct: 351 RPLI 354


>gi|307728895|ref|YP_003906119.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1003]
 gi|307583430|gb|ADN56828.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1003]
          Length = 382

 Score = 88.1 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/375 (10%), Positives = 109/375 (29%), Gaps = 25/375 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRIYERYFARQIYLTFIFILFAFSGLFFFFDLINELNSVGHGNYKFQYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L    ++   +
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVFLTYLIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL---------DDDLYIKISKYNPNNTLQ 171
           I P      +++  +A  +   S  +  ++ +              ++ + +  P+ T+ 
Sbjct: 121 IGPYTDQLSERVRLEAMGSSVSSNFKSGVWVKDTLTARADGEQVTRFVNVGELKPDATIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-----------SPISKDISI 220
            + I +                +        L      +              ++     
Sbjct: 181 NVRIYEFDSKFRLSNVRIAQSGVYQPPGHWRLTGVTDTQLIDVPPPAGTPADALNPVYRA 240

Query: 221 MKFKSYTLQTE---SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
            +            +    +++L + D+   F L     +     +  + Y     +++ 
Sbjct: 241 KQVVLPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTENHQDTQRYEIALWRKVL 300

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
                 +  ++S+  A      R       +F  + +        +   H    N +  P
Sbjct: 301 YPFAVFVMLVLSLPFAYL--HTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358

Query: 338 ILYLFLFCISSIFLL 352
           +       +  +  L
Sbjct: 359 LTAATPGLVYLVLGL 373


>gi|116251334|ref|YP_767172.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255982|emb|CAK07063.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 362

 Score = 88.1 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/353 (11%), Positives = 110/353 (31%), Gaps = 10/353 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y  R    +     + +  I++++   +    +S     ++   + ++   +P +L
Sbjct: 5   TLSRYFFRRYLVTTGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGVLMTAVRLPLIL 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF        VL  +NR  EL++    G S    + P +  ++ L +    + N +
Sbjct: 65  QQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGLLTMAALNPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
               +     + +  +           + +                            D 
Sbjct: 125 AAWGQRQALLVESDWRGENAVLRKAPQIPWLRQ---ISGRDDVIIGAQTVQENGTKLIDA 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                  +    +  D     L DG     + + +    +  +  ++Q  +      V +
Sbjct: 182 VLIHFDSSGQVILRQDAATAKLEDGYWQLNTVVERKPGEIPVRKASVQLRTNLKQDFVQE 241

Query: 242 ---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A +    F L+             +   ++F+  L+Q L  V    I+   + K + 
Sbjct: 242 RLTAPETIGFFDLSNRIAAAKSFGISTKALETQFNSLLSQPLLLVAMTFIAATVSLKFSR 301

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             Q +    + +   +S  + +  + ++     +    P +  ++  + ++ L
Sbjct: 302 FNQSR---SVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALAL 351


>gi|299065988|emb|CBJ37169.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
           solanacearum CMR15]
          Length = 372

 Score = 88.1 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 116/364 (31%), Gaps = 20/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     L ++       +++ + + ++   S N +L + G      L 
Sbjct: 2   IFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLAALGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++    G S    I+PVL  ++   + + +      
Sbjct: 62  ILLCATLFISVLLVLTRWYKDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVGLLALFGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P           + +     S +    F       Y+   +           +  +   Q
Sbjct: 122 PWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANAEQ 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT-ESANSST 237
                      +  +     + ++L+ G  +  +P   D  I++F  Y ++       + 
Sbjct: 182 DKIGVALAKTGEFKAGPNGDRYVVLDKGRRYEGTPGQLDYRIVEFDRYGVKVANKPPQAD 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             L    +  + LL+                  E   R+   L  + F LI+I  A    
Sbjct: 242 ANLPTKSRPTTELLS----------NPTPENLGELVWRIGLPLLALNFVLIAIPLAY--- 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIK 355
           +  +  +  P+  ++ I        +     +   +    +    + L       LL   
Sbjct: 289 VNPRLGRYTPMIFAVLIYLTYSNLLNLSQAWVAQGKMSAMLAWWPIHLAAFVCAALLFRF 348

Query: 356 KKYT 359
           + Y+
Sbjct: 349 RHYS 352


>gi|254503227|ref|ZP_05115378.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
 gi|222439298|gb|EEE45977.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
          Length = 364

 Score = 88.1 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 114/356 (32%), Gaps = 13/356 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
           ++  +Y      ++ L   LF   + ++  +L+ +   S     ++  +  IS   +P +
Sbjct: 5   RTLSVYFSGRFIKAILGLFLFAAVLLFLFDVLELVRRGSDREGFTVMRVAYISLLRVPLL 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V PF           +++R  EL++    G S      P + + + L IF     N 
Sbjct: 65  LEQVIPFTVLFGAIAAFVTLSRALELVVTRAAGISVWQFSTPAVLVGLFLGIFSITVYNP 124

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----LYIKISKYNPNNTLQGIFI 175
                +   ++ +A    A     L+ +    +  D       ++ S+   N T      
Sbjct: 125 AAVYLQQKSEEAAAGLFGADQTFLLQSSGEVWVRQDGLDGESVLRASQLLDNGTRLLRVT 184

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           V + D         ++    L  +   L++  V+      +  S+ +  ++     +   
Sbjct: 185 VFTFDEDGTFRERIEAEQARLGNETWYLDNAIVYTTENDPQSYSVYQISTF---LTATEV 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
              +      +   L     +           Y  ++   L + L  +   LI+   +  
Sbjct: 242 RESIGSPESISFWNLPR-FIDLARNAGLPAYRYNLQYQSLLARPLLLIAMILIAAAVSL- 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             + R       I   +   F ++   + +           P++  +   I  + +
Sbjct: 300 -KVSRFGGLGRMILGGILSGFVLY-VLTELAKDFGGAGIVPPLVAAWAPGIFGVLM 353


>gi|94500485|ref|ZP_01307016.1| predicted Permease [Oceanobacter sp. RED65]
 gi|94427275|gb|EAT12254.1| predicted Permease [Oceanobacter sp. RED65]
          Length = 340

 Score = 88.1 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/328 (11%), Positives = 104/328 (31%), Gaps = 17/328 (5%)

Query: 32  ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           ++  +N   +       +     Y  P  L ++ P  F +    V   M+   E+ ++  
Sbjct: 1   MVIHLNKAVAGIIPPEAVFYTILYNSPGFLQLILPLGFYISILLVYGRMHSENEMTVLYA 60

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
           TG     + +  +    ++ + +      + P     + +   + Q    FS++    F 
Sbjct: 61  TGFGPKQVFRITMAPVTVMMLLIGFLSLYLAPTAADKLDRYLQEQQQESEFSFVTPGRFN 120

Query: 152 RLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILN--DGEVH 209
            L           + +   + +  V   D     +  +    +D +  +  L   +G+  
Sbjct: 121 ALGKGGEKVSYAEDLSADRKQMQQVFMADGNVLLLAESGQQFVDPNSGSRYLELNNGKRF 180

Query: 210 RKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR 269
              P   +   M F  Y ++    +      +    +   LL+               Y+
Sbjct: 181 SGVPGDPNFEAMSFDRYAVKIAEESDVAKKARYEAVSTMELLD----------REHRVYK 230

Query: 270 SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
           +  H R+  ++   I  +++        +  ++ +   +  ++ +    +         +
Sbjct: 231 ARLHYRIGLFILVPIIVIMAFPL---SHVKPRQGRYGKMLPAVVLYMVYYTTLITARKWM 287

Query: 330 --EQNPYYIPILYLFLFCISSIFLLMIK 355
                P ++ + +L    +S   +LM  
Sbjct: 288 EQGDTPEWLGLWWLHGIFLSIGLMLMYW 315


>gi|320352233|ref|YP_004193572.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
           2032]
 gi|320120735|gb|ADW16281.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
           2032]
          Length = 360

 Score = 88.1 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 121/358 (33%), Gaps = 4/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YIL    R+  M     + +  +I   ++I+      +S +++       IP +
Sbjct: 1   MILLYRYILAHFLRNLGMIMASFITLYLLIDFFEKIDNFLEKGKSFSLIATFFFANIPFI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVL-FLAILLSIFLFISEN 119
           + +++P C  +     L  +N + EL+ +   G     +  P++        +FL + + 
Sbjct: 61  IDLMSPVCILLAGVVTLGVLNHSNELIALKACGIPLKKITVPIIGAALACTLLFLAMDQY 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           ++      T +  + + +  +         ++    + +   S+ +P   L   F     
Sbjct: 121 VLPKTIAVTNQIWNKEIKGKVPLGIYRNGRYYYRGQEGFYSFSRPDPQKNLFKNFSYTVW 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D +        +     ++    L +G++ + +      +   F +  +          V
Sbjct: 181 DKEHAANTLIAAEIAVWNKGVWTLRNGQIQK-AAGGDRFATQVFTNRRINFPETPDDFFV 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                  LS +            E      ++F+ R++  L  +   L+ +         
Sbjct: 240 PAYRSMELSLVQLYKETQHTRSEEERSKAWADFYGRISYTLLGLPLLLLGLPLLLLVYRK 299

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLMIK 355
             R     I +S  ++F  +  ++ +    + +  P     + + L      F L+++
Sbjct: 300 WGRDLSLAIPVSCGMAFLCWGVYTTLQSLAKASYIPPLAAAISVHLLVGCVGFFLLLR 357


>gi|315185938|gb|EFU19702.1| permease YjgP/YjgQ family protein [Spirochaeta thermophila DSM
           6578]
          Length = 361

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/361 (11%), Positives = 108/361 (29%), Gaps = 5/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    + L      F  + +  V I  +I +   +     +  +   +L +    +P  
Sbjct: 1   MRIITRFALSWFLPLFFAALVSFVTILELIDLFTNLVAYIDADLTTFQILHLQLLYLPKC 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P          L S++ + EL+ +   G S    + P +   +L S   F  E +
Sbjct: 61  VTYSLPIATLFAVAFSLGSLHASNELIALFGAGISLYRFVLPFVVCGLLFSGAYFFIEEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +     +  ++L A      + + +        ++ L +   +Y+  +      +V  +D
Sbjct: 121 LAIPSLTQKQELMAILMGRTSPTQVVNVTLVGEENRLVVHTRRYDDRSRTITRVLVYEKD 180

Query: 181 TQ--THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +        A+ G+ D +++  +L     +       ++    F+              
Sbjct: 181 EEGAFASRIEAERGTWDPEQREWVLQRVRRY-IRDEEGNLKEESFEKLRTDLGEIQPEDF 239

Query: 239 VLKANDQNLSFLLNP--NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +   +  +   L                     ++++KR++      I  L++   A + 
Sbjct: 240 LQTRHSIDKMTLAEAGRWIQTLKRAGLPYREALTDYYKRISFAFTSFIVALLASSVAGRF 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +          +      +         P     L + +F   SI       
Sbjct: 300 KANALLLSLLLSLSIGVSYYVFQMVTTLFAKLGYLPPVVGAWLPVLVFFSGSILFFKYIA 359

Query: 357 K 357
           +
Sbjct: 360 R 360


>gi|123966805|ref|YP_001011886.1| putative permease [Prochlorococcus marinus str. MIT 9515]
 gi|123201171|gb|ABM72779.1| possible permease [Prochlorococcus marinus str. MIT 9515]
          Length = 386

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/376 (12%), Positives = 120/376 (31%), Gaps = 25/376 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + +I+  +      +      ++  +  +   I  +      + I LKI    +P  L
Sbjct: 10  LIDKWIISKLIPILFFAISAFTIVSLSVGVMFDLIRKIVEYGLPIFIALKIFFLSLPGFL 69

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +       +++ N+E+L + + G +   ++ P L LA+ ++   F   + +
Sbjct: 70  VIAFPMSVLLSCLLTYGNLSSNSEILALKSLGVNNFRVVLPSLLLAVFMTFLTFTFSDNL 129

Query: 122 EPKCRS-----------------TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY 164
            P                       +   + ++                    +I  ++ 
Sbjct: 130 VPISNRLAADLLQNSMGKSMRTERGRYNISFSKYGSIVDSNTNKPIDGASHLTHIFYARR 189

Query: 165 NPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK 224
               T+  I ++D     T  +  AQ+G  D +  +   N+G++   +     +S + F 
Sbjct: 190 FLKKTMYDITVIDFSKKGTKILITAQNGVFDEELSSWQFNNGKIM-ATEDEGSVSTIIFD 248

Query: 225 SYTLQTESANSS--TIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLF 281
           +Y    ++  S    I L AN+  +S               +     +   ++++T  + 
Sbjct: 249 TYIYPLDNGPSKLAEIPLDANNMTISQARKAQKMYEMSGNTKESRKMKVRIYEKMTLPMS 308

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL-Y 340
            ++F LI            +  K     IS+ + F  +                     +
Sbjct: 309 CIVFALIGSTLGI--KQNIRSSKSQGFGISIILIFLYYLTCFVFSSMGVIGILTPFFAAW 366

Query: 341 LFLFCISSIFLLMIKK 356
           + +         ++ +
Sbjct: 367 IPVLMFLGFGTFLLWR 382


>gi|326796829|ref|YP_004314649.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
 gi|326547593|gb|ADZ92813.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
          Length = 369

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 121/359 (33%), Gaps = 19/359 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + +  S     L ++ I    + +  +   +    S   L  I G+ +P+ + 
Sbjct: 2   RLFRYLAKEVLVSTAGVTLILLLIILSGRFVNYLGRAAEGKMSFEFLFIILGFHVPSFIQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+ P  F +        +    E+ I+ ++G S++ L    L +A LL++        + 
Sbjct: 62  MILPLAFFLSLLLAYGRLYIENEMSILFSSGISKVKLTVYTLGIAGLLTLTSAFVNFWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +    +      F +++   F           S       +  IF+ D     
Sbjct: 122 PYSEYQAELARQEQDQLTAFDFIQPGRFQGRGQQTTYVASFTPEEGWMNNIFLSDFVRKN 181

Query: 183 TH----KIYYAQSGSIDLDR----QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                 +     +  I L+       +I  DG  +  +P + +  IM+F +Y ++ E   
Sbjct: 182 GRDIPVQTIAKNAEQIRLETEGGLNYLIFKDGVRYEGTPGAANYRIMEFDTYAIRLEDKA 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
             TI  KA     + L N               Y +E H R+   +   I  +I +  + 
Sbjct: 242 PGTI-DKAYAVPTTALFN----------SDNPKYIAELHWRIALVIMIPILAIIGVSLSQ 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                 +  K+ P  + + +  G+       + K +   +         F I +  L +
Sbjct: 291 VNPRQGRFFKMLPAILLMIVYLGLLIWGKTALEKGKIPLHLGLWWAHGTFAIIAYLLFL 349


>gi|17547135|ref|NP_520537.1| hypothetical protein RSc2416 [Ralstonia solanacearum GMI1000]
 gi|17429437|emb|CAD16123.1| putative permease transmembrane protein [Ralstonia solanacearum
           GMI1000]
          Length = 372

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 116/364 (31%), Gaps = 20/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     L ++       +++ + + ++   S N +L + G      L 
Sbjct: 2   IFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLAALGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++    G S    I+PVL  ++   + + +      
Sbjct: 62  ILLCATLFISVLLVLTRWYKDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVGLLALFGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P           + +     S +    F       Y+   +           +  +   Q
Sbjct: 122 PWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANAEQ 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT-ESANSST 237
                      +  +     + ++L+ G  +  +P   D  I++F  Y ++       + 
Sbjct: 182 DKIGVALAKTGEFKAGPNGDRYVVLDKGRRYEGTPGQLDYRIVEFDRYGVKVANKPPQAD 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             L    +  + LL+                  E   R+   L  + F LI+I  A    
Sbjct: 242 ANLPTKSRPTTELLS----------NPTPENMGELVWRIGLPLLALNFVLIAIPLAY--- 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIK 355
           +  +  +  P+  ++ I        +     +   +    +    + L       LL   
Sbjct: 289 VNPRLGRYTPMIFAVLIYLTYSNLLNLSQAWVAQGKMSAMLAWWPIHLAAFVCAGLLFRF 348

Query: 356 KKYT 359
           + Y+
Sbjct: 349 RHYS 352


>gi|187479476|ref|YP_787501.1| permease [Bordetella avium 197N]
 gi|115424063|emb|CAJ50616.1| putative permease [Bordetella avium 197N]
          Length = 389

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/382 (11%), Positives = 127/382 (33%), Gaps = 25/382 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   Y+ R I RS  +  L ++ +     ++  ++ V     S+  LL +    +PT 
Sbjct: 1   MRTARRYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGEK-FSMLALLYMQALALPTR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  + +  EL+I+  +G S + L++ +  + I + I   +    
Sbjct: 60  LYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLMRMLWVVTIPVMIGATLLSEF 119

Query: 121 IEPKCRSTIKQLSAKAQLA----LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           + P       +     +         S        R      I I     +  ++ + + 
Sbjct: 120 VTPIAEIKSGEADLTFRGKAGGGRLNSGYWFKEPTRDGGTRIINIQTLLADGQVRDVTLY 179

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK--------------DISIMK 222
           + +     +     +  +  D   ++L+D    R +P +               ++  + 
Sbjct: 180 ELKPDLELESLSKAAKGVFTDGD-LLLSDVVQTRIAPEAAQALANAKQPPKPPAEVETLA 238

Query: 223 FKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
                           VL     + + L++   +  ++     +       ++       
Sbjct: 239 SLRLDTTLSPERLLARVLTPERMSAATLID-YIDYLHHNQLQADRQVVALWRKFVYPFTL 297

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--- 339
           ++   I+   A  +           I I + ++F +    S  +  + + P ++  L   
Sbjct: 298 LVMITIAAPIAFMQTRRGGVGAKVFIGILMGVAFFMVNQLSLNVGMLSRWPPWLTALGPN 357

Query: 340 -YLFLFCISSIFLLMIKKKYTK 360
               +  + ++ ++  +  +++
Sbjct: 358 AAAMIVALGALVMMEYRHGFSR 379


>gi|332521048|ref|ZP_08397506.1| permease YjgP/YjgQ family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332043141|gb|EGI79338.1| permease YjgP/YjgQ family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 340

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/340 (12%), Positives = 99/340 (29%)

Query: 18  MSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVL 77
           M  L  + I   + + ++I  +      L   L            ++ P    +      
Sbjct: 1   MMILLFIPIGITVHLAEKIGKILDREAPLGETLIYFLDFTIYFAHLLFPLFLFLSVIWFT 60

Query: 78  TSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQ 137
           + +  NTE++   ++G S    ++P L  A ++++F  +    + P           K  
Sbjct: 61  SKLANNTEVIAFLSSGVSFTRFLRPYLIGATIVAMFSILLGLYLAPVASKGFNDFQYKYL 120

Query: 138 LALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLD 197
                      L    D ++    S      T     +    + +      A +     +
Sbjct: 121 KRKNNQAQSNVLKQINDKEIIYVSSFDPIKKTGLNFSLEHFENNKMTYKISAANIRYIEE 180

Query: 198 RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
                L             +++I + K      E  +       A     S L       
Sbjct: 181 DSIYRLRSYLKRNVGENEDELAIERKKDTIFSFELEDLVPEEYIAETLRYSELTRFIERE 240

Query: 258 PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG 317
                  +  Y+ E +++ +  +   I  +I++  + K+        +        +   
Sbjct: 241 EKRGSSNIGRYKLELYRKWSLPVSVFILTIIAVAVSSKKRRGGMGVNLAFGICIAMVFVF 300

Query: 318 VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
               F  +  + + +P        F+F I +  LL   K+
Sbjct: 301 FDKIFGTMAAQSDFSPLIAVWFPNFIFGILAAILLYNAKR 340


>gi|332851503|ref|ZP_08433500.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013150]
 gi|332866797|ref|ZP_08437201.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013113]
 gi|332729956|gb|EGJ61287.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013150]
 gi|332734405|gb|EGJ65525.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013113]
          Length = 341

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 110/330 (33%), Gaps = 14/330 (4%)

Query: 27  AWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTEL 86
               ++++   + +      +IL  I GY +P  L ++ P  F +    V   +  + E+
Sbjct: 1   MMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLTLILPLGFFIGLMLVFGRLYVDHEM 60

Query: 87  LIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLE 146
            +++ +G +R  L + ++ + ++  +   +    + P      ++L+    +   F  + 
Sbjct: 61  AVLNGSGVNRHQLARLLIPMTLVYMVCQSVLMLWMTPWGLREFEKLTTTQAVRTGFDLVR 120

Query: 147 ENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDR------QA 200
              F           S       L+ IF       +        +               
Sbjct: 121 PREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAKEGKPDVMILAKEATRVEVANDTANV 180

Query: 201 IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNY 260
           + L  G  +   P     +  +F+SY L+ E+           +   +  L    N+P  
Sbjct: 181 VDLVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKDVKFESGDVEALSTSKLFSKANDPV- 239

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
                   RSE   RL      +I  ++S+  ++      +  ++ P     +    +  
Sbjct: 240 -------VRSELGWRLFGPFTIIIALMLSVALSEVSPRQGRYYRLIPSIFIFASLIVLMI 292

Query: 321 GFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                I K E + +  P+  L     +++F
Sbjct: 293 AIKTRISKGELDIWAYPVALLVYAIAAALF 322


>gi|259907066|ref|YP_002647422.1| Putative permease [Erwinia pyrifoliae Ep1/96]
 gi|224962688|emb|CAX54143.1| Putative permease [Erwinia pyrifoliae Ep1/96]
 gi|283476866|emb|CAY72714.1| Inner membrane protein yjgP [Erwinia pyrifoliae DSM 12163]
          Length = 366

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 123/345 (35%), Gaps = 19/345 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLTLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  +  L+K  + L +  ++   ++   + 
Sbjct: 62  LILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKAAMILMLFTALLAAVNVGWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+     + L    F +  D   +   +    NT   +F+   R   
Sbjct: 122 PWSSRYQNEVMQNAKANPGAAALAAGQFQQSGDGQSVLFIENVKGNTFSNVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  AQ G ++      Q + L+ G     + + +D  I  FK+Y         + 
Sbjct: 182 NARPSVVVAQQGHMEQRVDGSQIVTLDSGTRFEGTALLRDFRITDFKNYQAIIGHQAVTL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               +   +L  L + +  +          +RSE H RLT     +I  L+         
Sbjct: 242 DPNDSEQMSLDTLWHSDKPD----------FRSELHWRLTLVFSVLIMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           +  ++ ++  +  ++ +    F   S +           P + ++
Sbjct: 289 VNPRQGRVLSMLPAMLLYLVFFLLQSSMRSS-GSKGRIDPAIAMW 332


>gi|312170934|emb|CBX79193.1| Inner membrane protein yjgP [Erwinia amylovora ATCC BAA-2158]
          Length = 366

 Score = 87.7 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 124/345 (35%), Gaps = 19/345 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLTLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  +  L+K  + L +  ++   ++   + 
Sbjct: 62  LILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKAAMILMLFTALLAALNVGWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+     + L    F +  D   +   +    NT + +F+   R   
Sbjct: 122 PWSARYQNEVMQNAKANPGAAALAAGQFQQSADGQSVLFIENVKGNTFRNVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G ++      Q + L+ G     + + +D  I  FK+Y         + 
Sbjct: 182 NARPSVVVAEQGRMEQRVDGSQIVTLDSGTRFEGTALLRDFRITDFKNYQAIIGHQAVTL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               +   +L  L +    +          +RSE H RLT     +I  L+         
Sbjct: 242 DPNDSEQMSLDTLWHSGKPD----------FRSELHWRLTLVFSVLIMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           +  ++ ++  +  ++ +    F   S +     +     P + ++
Sbjct: 289 VNPRQGRVLSMLPAMLLYLVFFLLQSSLRSSGGK-GRIDPAVAMW 332


>gi|53725612|ref|YP_102445.1| hypothetical protein BMA0670 [Burkholderia mallei ATCC 23344]
 gi|67640814|ref|ZP_00439608.1| permease YjgP/YjgQ family protein [Burkholderia mallei GB8 horse 4]
 gi|76811145|ref|YP_332584.1| hypothetical protein BURPS1710b_1173 [Burkholderia pseudomallei
           1710b]
 gi|121600496|ref|YP_993650.1| hypothetical protein BMASAVP1_A2341 [Burkholderia mallei SAVP1]
 gi|124384824|ref|YP_001028888.1| hypothetical protein BMA10229_A2944 [Burkholderia mallei NCTC
           10229]
 gi|126449595|ref|YP_001081199.1| hypothetical protein BMA10247_1655 [Burkholderia mallei NCTC 10247]
 gi|126453481|ref|YP_001065300.1| hypothetical protein BURPS1106A_1020 [Burkholderia pseudomallei
           1106a]
 gi|134281127|ref|ZP_01767836.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|167003638|ref|ZP_02269424.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|167718521|ref|ZP_02401757.1| hypothetical protein BpseD_05832 [Burkholderia pseudomallei DM98]
 gi|167737553|ref|ZP_02410327.1| hypothetical protein Bpse14_05780 [Burkholderia pseudomallei 14]
 gi|167823141|ref|ZP_02454612.1| hypothetical protein Bpseu9_05658 [Burkholderia pseudomallei 9]
 gi|167844705|ref|ZP_02470213.1| hypothetical protein BpseB_05393 [Burkholderia pseudomallei B7210]
 gi|167893240|ref|ZP_02480642.1| hypothetical protein Bpse7_05710 [Burkholderia pseudomallei 7894]
 gi|167901697|ref|ZP_02488902.1| hypothetical protein BpseN_05420 [Burkholderia pseudomallei NCTC
           13177]
 gi|167917973|ref|ZP_02505064.1| hypothetical protein BpseBC_05418 [Burkholderia pseudomallei
           BCC215]
 gi|217419559|ref|ZP_03451065.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|226194459|ref|ZP_03790057.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|237811280|ref|YP_002895731.1| permease YjgP/YjgQ family protein [Burkholderia pseudomallei
           MSHR346]
 gi|242314384|ref|ZP_04813400.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|254177658|ref|ZP_04884313.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|254181441|ref|ZP_04888038.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|254190840|ref|ZP_04897347.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254196385|ref|ZP_04902809.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|254199347|ref|ZP_04905713.1| putative membrane protein [Burkholderia mallei FMH]
 gi|254205663|ref|ZP_04912015.1| putative membrane protein [Burkholderia mallei JHU]
 gi|254259902|ref|ZP_04950956.1| putative membrane protein [Burkholderia pseudomallei 1710a]
 gi|254357821|ref|ZP_04974094.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|52429035|gb|AAU49628.1| membrane protein, putative [Burkholderia mallei ATCC 23344]
 gi|76580598|gb|ABA50073.1| membrane protein, putative [Burkholderia pseudomallei 1710b]
 gi|121229306|gb|ABM51824.1| putative membrane protein [Burkholderia mallei SAVP1]
 gi|124292844|gb|ABN02113.1| putative membrane protein [Burkholderia mallei NCTC 10229]
 gi|126227123|gb|ABN90663.1| putative membrane protein [Burkholderia pseudomallei 1106a]
 gi|126242465|gb|ABO05558.1| putative membrane protein [Burkholderia mallei NCTC 10247]
 gi|134247433|gb|EBA47518.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|147748943|gb|EDK56017.1| putative membrane protein [Burkholderia mallei FMH]
 gi|147753106|gb|EDK60171.1| putative membrane protein [Burkholderia mallei JHU]
 gi|148026948|gb|EDK84969.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|157938515|gb|EDO94185.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|160698697|gb|EDP88667.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|169653128|gb|EDS85821.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|184211979|gb|EDU09022.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|217396863|gb|EEC36879.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|225933544|gb|EEH29533.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|237504053|gb|ACQ96371.1| permease YjgP/YjgQ family protein [Burkholderia pseudomallei
           MSHR346]
 gi|238521609|gb|EEP85059.1| permease YjgP/YjgQ family protein [Burkholderia mallei GB8 horse 4]
 gi|242137623|gb|EES24025.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|243060864|gb|EES43050.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|254218591|gb|EET07975.1| putative membrane protein [Burkholderia pseudomallei 1710a]
          Length = 383

 Score = 87.7 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/381 (11%), Positives = 113/381 (29%), Gaps = 28/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQAPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ ++ + + + I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           I P      +++  +A  +   +     ++                ++ +   +P++T+ 
Sbjct: 121 IGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT---- 227
            + I +       +                +L D    + + ++ + +     +      
Sbjct: 181 DVRIYEFDSKFNLQNVRIAKRGHYQPPGHWLLTDVTDTQLTSLAGNGTASPVDTLNPVYR 240

Query: 228 ------------LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
                               S +++     +L  L      +     +  + Y     ++
Sbjct: 241 AQQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFR-YIQHLKENQQDTQRYDIALWRK 299

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L       +  ++S+  A                I L +SF +F      I  +  N + 
Sbjct: 300 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWP 357

Query: 336 IPILYLFLFCISSIFLLMIKK 356
            P+      CI     L   K
Sbjct: 358 APLTAALPGCIYLALGLFALK 378


>gi|319789793|ref|YP_004151426.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
 gi|317114295|gb|ADU96785.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
          Length = 359

 Score = 87.7 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 114/351 (32%), Gaps = 18/351 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI   I R   +S    +F+  + +       V     S    L +    +P  
Sbjct: 1   MKVLHRYIAFEITRVAALSSALFLFVILMDRASTIAETVLGKGVSFLDFLSVLAKGLPAF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P  F +    V   MN N EL    + G S   L KPV  L ++ S+  F S   
Sbjct: 61  LGIVIPMSFVLSVVIVFIGMNSNNELTAAKSCGISLKELSKPVFLLGLIFSLLSFYSLMF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK    +K+   +         + E  F      +   + K  P   L   F+   + 
Sbjct: 121 LAPKSNVAMKRELEELLRKKITLSITEKRFSSNFPGVTFYVEKLYPEKGLLVNFMASLQK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIIL--NDGEVHRKSPIS-KDISIMKFKSYTLQTESANSST 237
            +     + + G +      + L   DG          K+   +KFKSYT++        
Sbjct: 181 KEKLVTAFGRRGFLRTKGDTVFLDIEDGSAQVVDWKKPKEFKFIKFKSYTVELYKFTRKE 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A  + L  LL                 R    KR       +I G+I    A    
Sbjct: 241 RFKAAKYKTLFQLLKERDKEA----------RVAVVKRTALAFASLIVGIIGFSIAVS-- 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
            + +      + ISL +    +  +++      +     P+L L    +  
Sbjct: 289 -IPRGSIGVGVLISLLLIVLYYILYTFSKKVALKTGQ--PLLALLPDVVFG 336


>gi|167580135|ref|ZP_02373009.1| hypothetical protein BthaT_18420 [Burkholderia thailandensis TXDOH]
          Length = 383

 Score = 87.7 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/381 (11%), Positives = 114/381 (29%), Gaps = 28/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQAPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ ++ + + + I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           I P      +++  +A  +   +     ++                ++ +   +P++T+ 
Sbjct: 121 IGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT---- 227
            + I +       +                +L D    + + ++ + +     +      
Sbjct: 181 DVRIYEFDSKFNLQNVRIAKSGRYQPPGHWLLTDVTDTQLTNLAGNGATAPNDTLNPVYR 240

Query: 228 ------------LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
                               S +++     +L  L      +     +  + Y     ++
Sbjct: 241 AQQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFR-YIQHLKENQQDTQRYDIALWRK 299

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L      ++  ++S+  A                I L +SF +F      I  +  N + 
Sbjct: 300 LLYPFAVLVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWP 357

Query: 336 IPILYLFLFCISSIFLLMIKK 356
            P+      CI     L   K
Sbjct: 358 APLTAALPGCIYLALGLFALK 378


>gi|260576762|ref|ZP_05844747.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
 gi|259021014|gb|EEW24325.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
          Length = 364

 Score = 87.7 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 106/356 (29%), Gaps = 11/356 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +  LYI R      L   L    I  +I  L ++  +S    SL     ++   +P+ L 
Sbjct: 2   TLSLYIARRFVWLLLGIILGFATILLLIDSLDQLRRLSGQGISLGQATLLAAMNMPSSLY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +    +   + R++EL+++  +G S +  +   +  A+L         N + 
Sbjct: 62  RILPLLMILAAITLFMGLARSSELVVVRASGRSGLRFLATPVLAALLFGAVAVAVLNPLV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR-----LDDDLYIKISKYNPNNTLQGIFIVD 177
                    L +K            +          D    I  ++ N + T        
Sbjct: 122 AATLKRYDTLLSKYAQDGESVLSINDDGLWLRQGGPDGQTVIHAARANADGTELFSVTFL 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF--KSYTLQTESANS 235
           S D         ++    L   A  L D +    +  + + S  +               
Sbjct: 182 SFDAAGLPSARTEAREARLGDGAWALVDAKTWPLNLANPEASAARETGTRLPSDLTRDAI 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                     ++  L +              ++R      L   L      LI+  A   
Sbjct: 242 RDSFGTPAAISIWNLPS-YIAGLERAGFSARSHRVWLQTELALPLLLAAMVLIA--AGFT 298

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               R  K    + ++L   FG+F+  ++    + +N      +  +    +++  
Sbjct: 299 MRPTRSGKTGTYVLLALLGGFGIFFLRNFAQ-VLGENGQIPIAMAAWSPPAAAVLF 353


>gi|159043738|ref|YP_001532532.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
 gi|157911498|gb|ABV92931.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
          Length = 365

 Score = 87.7 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 103/361 (28%), Gaps = 9/361 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y  R    SFL        + W+   ++ +  +SS    L     ++   +P  + 
Sbjct: 2   TLQWYFARRFVMSFLSMLGIFAGLIWMTDTVESLRSLSSDDFGLQEAAALALLQLPATIY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P    + T  +   M R +EL++    G S I  +   + +A L+        N I 
Sbjct: 62  EVIPLIMVLATITLFLKMARTSELIVTRAAGRSAIRSLIAPVIVAGLIGGIGISVLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR-----LDDDLYIKISKYNPNNTLQGIFIVD 177
                  ++   + +   T      +          +  + I  +  +   T+       
Sbjct: 122 AATSRIAEETRDEVRGRATSVLALSSEGLWLRQAAPEGQIVIHAAGASLGGTILYDVTFL 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS---PISKDISIMKFKSYTLQTESAN 234
             D     I    +   +L   A  L   +V   +        +    +           
Sbjct: 182 RFDADALPIERVAASRAELVPGAWDLTGVKVWDLTGRLNPEAGVRTSAWMQVPSDLTLDQ 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                   +   +  L     +          ++R   H  L   +F V   LI      
Sbjct: 242 IRDSFGDPSAIPIWEL-PAFIDQLEAAGFAALSHRVWLHTELASPVFLVAMVLIGAAFTM 300

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +     +   +    + L  S      F+ ++ +  + P      +  L  +     L++
Sbjct: 301 RHTRFGRTGLMVLFAVLLGFSMYFLKSFAQVLGEAGKIPVLAAAWFPPLAGVFLSLALLL 360

Query: 355 K 355
            
Sbjct: 361 H 361


>gi|254418566|ref|ZP_05032290.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
 gi|196184743|gb|EDX79719.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
          Length = 378

 Score = 87.7 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 117/357 (32%), Gaps = 7/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPT 59
           +   E Y+L    RS  ++   I  +  +I  ++    V S    S   +L +     P+
Sbjct: 16  LGRIERYVLIQQLRSLGVALAVISALVMLIDFVEVSRGVGSDQDLSALRILGLVALKSPS 75

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+  + PF F   T      +NR +EL+ +   G S    + P   +A++L +       
Sbjct: 76  VIVQLLPFVFLFGTLAAYIGLNRRSELVAMRAAGVSAWRFVLPAAGMALVLGVLTVTVLG 135

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            +        ++  A+       +   + ++ R  DD    I +    +      +  + 
Sbjct: 136 PLASAGDGLWQRERARISGTAPGASSNDAIWLREGDDQRQMIIRAGRQDRANARLLDVTF 195

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI--SIMKFKSYTLQTESANSST 237
              T      +  S  +D ++  L+ G       +   I    + + S  L +  A+   
Sbjct: 196 FIYTTDAEGNRDFSERIDARSAALSAGRWRLTDAVGASIGQRAVTYSSLDLLSSLADEEA 255

Query: 238 IVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               A  Q+  F   PN              YR  F + L   L      +++   +   
Sbjct: 256 FERFARPQSTPFWSLPNQIKRIEDAGFASTAYRLRFQQLLVTPLVFAAMSILAAAFSL-- 313

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            L+R          ++ + F  F+  +     +       P +  +L  I +     
Sbjct: 314 RLMRLGDLAKMSVAAVVLGFAFFF-LNQFSSAMGSAEVVPPFVAAWLPPILTALAAF 369


>gi|52425604|ref|YP_088741.1| hypothetical protein MS1549 [Mannheimia succiniciproducens MBEL55E]
 gi|52307656|gb|AAU38156.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 366

 Score = 87.7 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 122/357 (34%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + +S +     ++ I +  Q+++ +   ++     +++L + G  +P +  
Sbjct: 2   ILTRYLTKEVFKSQVAILFILLLIFFSQQLVRVLGSAANGNVPADLVLSLLGLGMPAMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L L++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEISVMRACGVGQRILVKVALGLSVLTAALAAYNVLWVS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       Q+   A+     S L    F   +D  ++       +N +  I++  +++  
Sbjct: 122 PWAIQKQGQIVEDARANPNMSALSAGQFMTSNDSDFVLFIDNIKDNKISNIYLFQTKEKG 181

Query: 183 T--HKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A++G +       Q + L + +    S    D  I  F  Y       N  +
Sbjct: 182 NSKPSVIVAENGELQSLPNGDQILSLQNSQRVEGSAALPDFRITNFTEYQAYLGHRNVDS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +                           ++E + R++  L   +  L+++       
Sbjct: 242 DENETT----------ELPLAELLALKTPAAKAELNWRISLILAVPLMALLAVPL---SK 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLM 353
           +  ++ +   I  +L +    F   S +             ++ L       + +++
Sbjct: 289 VNPRQGRFAKILPALLLYLIYFLLQSSLKSAGGAGKLDAGLLMPLVNLFFLLLGIML 345


>gi|15604701|ref|NP_221219.1| hypothetical protein RP871 [Rickettsia prowazekii str. Madrid E]
 gi|6831726|sp|Q9ZC95|Y871_RICPR RecName: Full=Uncharacterized protein RP871
 gi|3861396|emb|CAA15295.1| unknown [Rickettsia prowazekii]
          Length = 360

 Score = 87.7 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 156/363 (42%), Gaps = 11/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++PT+
Sbjct: 1   MLLYRKYFIKNILPLLIIVTFSVTSIVWITQILKLLYLF-DKGIKVIDFFNLVVLVLPTL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G + I L  P L++A+ + +  +   + 
Sbjct: 60  LFILLPIITVIAVLYIYNNLKVERQLIILQTSGVNNIQLALPALYVALTIMLLAYYISST 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K      +     S +EE  F ++  ++ + I K    N + GI I D+R+
Sbjct: 120 ILPLSHINLKSRLNFIKNNYISSMIEEKTFNKITKNITVFIDKKLTGNIMNGIIIFDNRN 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANSSTIV 239
                + +A SG++++     I    +  R+    + +++ + F S  ++ ++ +S T  
Sbjct: 180 ADNPSVVFAGSGTLNIYGNNPIFELNKGLRQEYDANGNLTQLTFDSLMIKLQNNSSLTSQ 239

Query: 240 L-----KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 +AN+  +S LL P+ +    +        +E H+R+   L+  +   +++    
Sbjct: 240 RTQNNKEANEYYISELLTPSHDLVITKKI---KLIAEAHQRIIWPLYNFVLPCLALAVFL 296

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +    ++   +  +F +L++ F     F  + +   +N  +I   Y  L    +I L ++
Sbjct: 297 RYPYSKKTTFMPVLFSALTVLFVTAIHF-ILQNFASKNLDFIFACYFNLLVALTIGLYLL 355

Query: 355 KKK 357
             K
Sbjct: 356 VHK 358


>gi|157368808|ref|YP_001476797.1| permease YjgP/YjgQ family protein [Serratia proteamaculans 568]
 gi|157320572|gb|ABV39669.1| permease YjgP/YjgQ family protein [Serratia proteamaculans 568]
          Length = 364

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 131/356 (36%), Gaps = 19/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +   +++ +          N++L +    +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFCQNLVRVLGDAVDGDVPTNLVLSLLALGVPKMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +  ++E+ ++   G  + TLI   + LA+  S+    +   + 
Sbjct: 62  LILPLSLFLGLLMTLGRLYTDSEITVMHACGLGKRTLIIAAMVLALFTSVIAAANVFWVG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        + ++A+   + + L E  F    D   +        +T   +F+   R   
Sbjct: 122 PWASRYQDVVVSEAKANPSIAGLAEGQFKTSQDGNAVLFIGNVKGSTFNNVFLAQLRPNG 181

Query: 183 T--HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G I+  +   Q + L+ G     + + +D  I  F  Y         + 
Sbjct: 182 NQRPSVVVAEHGQINQMKDGSQVVTLDKGTRFEGTALLRDFRITDFNDYKAVVGHRAVTV 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A   ++  LL  +  +           R+EFH RLT  L  VI  L+         
Sbjct: 242 DGNQAEQMSMKTLLASDDPDA----------RAEFHWRLTLVLSVVIMALL---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +  ++ ++  +  ++ +    F   + +     +     P+++L++   +   + +
Sbjct: 289 VNPRQGRVLSMLPAILLYLIFFLLQTSLRSNGGK-GKLDPMVWLWVVNAAYFAIAL 343


>gi|114797170|ref|YP_760296.1| putative permease [Hyphomonas neptunium ATCC 15444]
 gi|114737344|gb|ABI75469.1| putative permease [Hyphomonas neptunium ATCC 15444]
          Length = 391

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 121/363 (33%), Gaps = 15/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y++R     F    +  + +  + ++++   +VS S  +      +   LIP  L 
Sbjct: 4   RLDRYLIRSFLGMFAGLTVLAMALLLLERLIRITEIVSGSGSAFASASLLVANLIPHYLN 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P  F +     +  ++R+ E++ +   G S   ++ P +  +++L+    +    ++
Sbjct: 64  LALPGAFLISMILTIDRLSRSGEIVALMAAGVSLYRIVLPFVQFSLVLAAASLLISGFLQ 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  R + +++    Q     S  +E  F + D+ +        P   L   FI++S    
Sbjct: 124 PLSRYSYREIVYNLQHQSVLSVFQEQKFVQYDNRIIWT-DSVLPGGRLGQTFILESEPDG 182

Query: 183 THKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE----SANS 235
              +    SG    I      I L  G               + +   L       +   
Sbjct: 183 ARTLLTGGSGKLREIRAGEWEITLLGGAGASYRDADPPEEYDRIEYGELSWPVIAETGQY 242

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                   +  L  LL                  + FH R ++    +   LI+I+    
Sbjct: 243 RARGGDERELFLPELLAK-AGAAMPGDIAPAVAAATFHDRTSRAALLLAMPLIAIILGLN 301

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF--CISSIFLLM 353
                +  +   + + +    GV     Y + +  +     P +  +     +++  + +
Sbjct: 302 LG---RVARSSGVVLGILFLLGVQKVLEYTLVQTSE-GVIPPWMGFWPIVVVVAAASIFL 357

Query: 354 IKK 356
            ++
Sbjct: 358 FRR 360


>gi|94495766|ref|ZP_01302346.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
 gi|94425154|gb|EAT10175.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
          Length = 402

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 132/360 (36%), Gaps = 14/360 (3%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R I    L + +    +  + ++L   + V++    ++++ ++   ++P  L + 
Sbjct: 6   DRYLARLIAVPMLGTLVIAAMLLVLDKMLSLFDFVAAEGGPVSVVWRMLANMLPEYLSLG 65

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +        +  ++EL ++   G S   L++     AI L++  F     ++P 
Sbjct: 66  IPIGLMLGILLAFRKLAMSSELDVMRAVGLSYGRLLRVPYMYAIALALINFGIVGFVQPL 125

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI-SKYNPNNTLQGIFIVDSRDTQT 183
            R   + L  + +     + ++   F  L   + ++I    +    LQGIF+  +     
Sbjct: 126 SRHAYEALRFELRSGALGASIKVGEFTNLGKRMTLRIERSRDQGRNLQGIFVRATSRDGQ 185

Query: 184 HKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                A  G+             L DG +   +P  K   I+ F S+ L  +     +  
Sbjct: 186 SVAVTAAQGTFLATDDPDVIIFRLRDGVLVNDAPKYKTPRILSFSSHDLPIDLPQIESFR 245

Query: 240 LKANDQ--NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            + ND+   +  L+    N     P+L    R+ FH R+ +    V   L+ + A     
Sbjct: 246 GRDNDREKTIPELVVIGKNQA-TPPKLRNEVRANFHFRMVE---VVFMLLLPLAALAFAI 301

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIFLLMIK 355
             ++      +F+S+           Y    +       PI+ L+      S + L M  
Sbjct: 302 PPKRSTSALGVFLSIVFIVTYHKVNQY-GESVGALGKIDPIIALWGPFLLASGLVLWMYH 360


>gi|313674336|ref|YP_004052332.1| permease yjgp/yjgq family protein [Marivirga tractuosa DSM 4126]
 gi|312941034|gb|ADR20224.1| permease YjgP/YjgQ family protein [Marivirga tractuosa DSM 4126]
          Length = 549

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 95/268 (35%), Gaps = 7/268 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  ILR     FL++   +VFI     +L+  +         ++  ++  Y    +
Sbjct: 1   MKKIDKLILRSFIGPFLITFFVVVFILLTQYMLKYFDDFVGKDLGFSVFAELIAYFSINM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
            P+  P    + +     ++  + EL  I + G S + +++P+    + LS  ++ S N 
Sbjct: 61  TPIAFPLAVLLSSLMTFGNLGEHFELTAIKSAGISLVRVLRPLFVFVVCLSAVVYYSNNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL-QGIFIVDSR 179
           I PK       L    +       ++E  F+       IK +K   ++     + I +  
Sbjct: 121 IVPKANLEAYSLLYDIKQKKPSIDIKEGAFYGGIPGYSIKANKKYDDDKSLGDLIIYNHS 180

Query: 180 DTQTHKIYYAQSGSIDLD-----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D + +        ++           + L DG+ + +   +K      +     +  +  
Sbjct: 181 DRKGNTEIILADSALMYTILGDKYLVMELFDGKSYTEEEANKPQEPSNYVRNIFK-HNKV 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRP 262
             ++     ++    L + N    N   
Sbjct: 240 VFSLASFEMERTDKELFSSNRLMKNENE 267



 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           L         R   +  Y  E + +L+Q +  ++  LI    A   A++++     P+ +
Sbjct: 418 LKGENRRIENRKFEINVYSIEANSKLSQAVACIVMFLIG---APLGAIIKKGGLGFPVIV 474

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIFLLMIK--KKYTKI 361
           S+   F V +  +    K+ +         ++   F +    L  ++  +  +++
Sbjct: 475 SILF-FIVSYVINTTGIKLGRAGDISNFWAVWASNFVLLPFGLFFLRQARNDSRL 528


>gi|83720791|ref|YP_441377.1| hypothetical protein BTH_I0821 [Burkholderia thailandensis E264]
 gi|167618241|ref|ZP_02386872.1| hypothetical protein BthaB_18181 [Burkholderia thailandensis Bt4]
 gi|257139950|ref|ZP_05588212.1| hypothetical protein BthaA_12230 [Burkholderia thailandensis E264]
 gi|83654616|gb|ABC38679.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 383

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/381 (11%), Positives = 113/381 (29%), Gaps = 28/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQAPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ ++ + + + I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           I P      +++  +A  +   +     ++                ++ +   +P++T+ 
Sbjct: 121 IGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT---- 227
            + I +       +                +L D    + + ++ + +     +      
Sbjct: 181 DVRIYEFDSKFNLQNVRIAKSGRYQPPGHWLLTDVTDTQLTNLAGNGATAPNDTLNPVYR 240

Query: 228 ------------LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
                               S +++     +L  L      +     +  + Y     ++
Sbjct: 241 AQQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFR-YIQHLKENQQDTQRYDIALWRK 299

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L       +  ++S+  A                I L +SF +F      I  +  N + 
Sbjct: 300 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWP 357

Query: 336 IPILYLFLFCISSIFLLMIKK 356
            P+      CI     L   K
Sbjct: 358 APLTAALPGCIYLALGLFALK 378


>gi|297172254|gb|ADI23232.1| predicted permeases [uncultured nuHF2 cluster bacterium
           HF0770_13K08]
          Length = 351

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 119/355 (33%), Gaps = 14/355 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    YI     R F++     V ++ V      +  V +  +S    L+ +  L+P +L
Sbjct: 4   KIISKYIASEFNRYFMLFLGAFVLMSLVGNFFGNLADVFTDWQSFLKFLQETALLLPLLL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P    + T    +S+N+N ELL I ++G     L  PVL ++ L++ F + S+N +
Sbjct: 64  ELIIPITVLLATIATYSSLNKNAELLAIRSSGIGGWRLAFPVLAVSALIASFAYFSQNYM 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
                 T  +    A+L          L+   ++           N  +  I   + +  
Sbjct: 124 YTWMHQTWVKQENSARL--------PPLWKVGEEQSIYYFGNRQHNGRISSITSFNWKQI 175

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
               +        +    + I +D + +     +  +  ++      +        I + 
Sbjct: 176 PFQLLGRTAIERGEQQNNSWIFHDIQKYIFQDENLRLEHVEQWRIETEKLPTVPFDIPIS 235

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            + Q L  L            + +  Y     ++        I  LI +      +  R+
Sbjct: 236 PHHQPLLDLYENTLK-LQSEGQDVTRYWVAIFQKTAYPFQIFIMVLIGL--GLSASYNRR 292

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIFLLMI 354
                 + IS  +   +FW  + I   +       P    +       ++ L ++
Sbjct: 293 GMAAESLAISCLLGI-LFWILNQITMAVGGAGLIFPFFAAWSGNIIFLALALWLL 346


>gi|261364965|ref|ZP_05977848.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
 gi|288566762|gb|EFC88322.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
          Length = 371

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/365 (11%), Positives = 146/365 (40%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   ++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F    + +  +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSMVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L +G  +  +P   D + + F++ +L   +     
Sbjct: 182 KNGNDNIIFAKEGNFSLNDNKRTLDLRNGYRYSGTPGKADYNRVSFQNLSLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        S L+                +++E   R++  +  ++     ++A    
Sbjct: 242 DPVSHRRTIPTSQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I +++ +      G +++ + +   +  +++ +L + +   +   +L+ 
Sbjct: 289 YFNPRSGHTYNILVAIGLFLIYQNGLTFLRNAVEDGKIHFWLGLLPMHIIMFAIAVVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|190891135|ref|YP_001977677.1| permease [Rhizobium etli CIAT 652]
 gi|190696414|gb|ACE90499.1| putative permease protein [Rhizobium etli CIAT 652]
          Length = 362

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 109/353 (30%), Gaps = 10/353 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y  R    +     +    IA+++   +    +S     ++   + ++   +P +L
Sbjct: 5   TLSRYFFRRYVATTGWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLPLIL 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF        VL  +NR  EL++    G S    + P +  ++ L +    + N +
Sbjct: 65  QQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGVLTTTALNPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
               +     + +  +           + +                            D 
Sbjct: 125 AAWGQRQALLVESDWRGENAVLRKAPQIPWLRQ---ISGRDDVIIGAQTVQENGTKLIDA 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                  +    +  D     L DG       + +    +  +  ++Q  +      V +
Sbjct: 182 VLIHFDSSGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241

Query: 242 ---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A +    F L+             +   ++F+  L+Q L  V   LI+   + K + 
Sbjct: 242 RLTAPETIGFFDLSNRIAAAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSLKFSR 301

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             Q +    + +   +S  + +  + ++     +    P +  ++  + ++ L
Sbjct: 302 FNQSR---SVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALAL 351


>gi|163759135|ref|ZP_02166221.1| putative permease [Hoeflea phototrophica DFL-43]
 gi|162283539|gb|EDQ33824.1| putative permease [Hoeflea phototrophica DFL-43]
          Length = 345

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 110/341 (32%), Gaps = 10/341 (2%)

Query: 14  RSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVLPMVTPFCFAME 72
            +FL  CL I+ I  ++   +    +S++   ++   L +S   +PT+L    PF   + 
Sbjct: 1   MTFLTYCLAILVIILLVDFNESGRRLSAAPEYTVTTGLLVSALRVPTILQAAIPFVVLIA 60

Query: 73  TTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS--TIK 130
           +   L  +NR  EL++    G S    + P++   +L+        N             
Sbjct: 61  SIATLLQLNRKYELVVARAAGISAWQFLAPLVAANLLIGFIAVAGLNTFAASAMQWAETI 120

Query: 131 QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQ 190
            +      A +              D  +         T          D   +     +
Sbjct: 121 IVERNLGSAQSSDSAPWLRQRTEQGDTVLGARASAAGGTRLSGATFFLFDEDQNIKERLE 180

Query: 191 SGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFL 250
           + +  L     +L +    R    S+ +  ++  S     ++      +   +      L
Sbjct: 181 AETAVLGDGEWVLTNVRRIR---GSEPVEQVESASVPTSLKAEFVGESLTSPDTVPFFEL 237

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
            +      ++      +Y  +FH+ + Q        LI+ + +     VR  + +  I  
Sbjct: 238 RDKIAVAKSF-GLSATSYEMQFHRLVAQPALLAAMTLIAAIVSL--KFVRFGQSLTVILG 294

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            +   F ++   S +I          PI+  +L  + +  L
Sbjct: 295 GILAGFVLYVV-SELIQAFANAGTIPPIVAAWLPVLVASAL 334


>gi|145641036|ref|ZP_01796617.1| predicted permease [Haemophilus influenzae R3021]
 gi|145274197|gb|EDK14062.1| predicted permease [Haemophilus influenzae 22.4-21]
          Length = 336

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 116/324 (35%), Gaps = 15/324 (4%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +   ++     +++  + G  +PT+  ++ P C  +        +   +E+ ++   
Sbjct: 1   MRVLGAAANGNVPADLVFSLLGLGMPTMAQLMLPLCLFIAILLTFGRLYAESEITVMRAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G  +  L+K  L +++L +     +   + P        +   A+   T   L    F  
Sbjct: 61  GVGQRILVKVALIMSLLTAGIAAYNALWLSPWAIQKQVNMVEDAKANPTVGVLSSGQFIS 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQ--THKIYYAQSGSI---DLDRQAIILNDGE 207
            +++  +       +N ++ +++      +     +  A+ G +       Q + L + +
Sbjct: 121 TNNNNVVLFIDKIKDNQIRNVYLFQMTPQKQTKPSVITAEKGELIALPNGDQVLNLKNTK 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + +  D  I  F  Y       ++     +  +  LS L++ + ++          
Sbjct: 181 RVEGTSVLPDFRITHFDEYQAYLGYQSAENTNDEVAELTLSQLIDLDSSSA--------- 231

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            ++E H R+T  L   +  LI++  +       +  KI P  +   I F +   F     
Sbjct: 232 -KAELHWRITLILAVPLMALIAVPLSRVNPRQGRFAKILPALLLYLIYFLLQSSFKSAGS 290

Query: 328 KIEQNPYYIPILYLFLFCISSIFL 351
             +     +  L    F + ++ L
Sbjct: 291 AGKLEAELLIPLVNIGFFLLAVVL 314


>gi|255066291|ref|ZP_05318146.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
 gi|255049501|gb|EET44965.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
          Length = 371

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 146/365 (40%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   ++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFALLIAVMQLWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F    + +  +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSMVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L +G  +  +P   D + + F++ +L   +     
Sbjct: 182 KNGNDNIIFAKEGNFSLNDNKRTLDLRNGYRYSGTPGKADYNRVSFQNLSLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        S L+                +++E   R++  +  ++     ++A    
Sbjct: 242 DPVSHRRTIPTSQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I +++ +      G +++ + +   +  +++ +L + +   +   +L+ 
Sbjct: 289 YFNPRSGHTYNILVAIGLFLIYQNGLTFLRNAVEDGKIHFWLGLLPMHIIMFAIAVVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|261345122|ref|ZP_05972766.1| inner membrane protein YjgP [Providencia rustigianii DSM 4541]
 gi|282566810|gb|EFB72345.1| inner membrane protein YjgP [Providencia rustigianii DSM 4541]
          Length = 365

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 129/357 (36%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +    +  +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFVLLLIFFSQMSIDILGAAVQGNIPSNLVLPLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +   +E+ ++   G  +  L+K  L LA+L ++    +   + 
Sbjct: 62  LILPLSLFLGLLMTYSKLYTESEITVMHACGLGKNVLVKAALVLAVLTALVAIANITWML 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q+   A+     + + E  F    D+ ++        N  + +F+   R   
Sbjct: 122 PWSSQYKEQVLGDAKANPGLAAMVEGQFKTTKDNNFVLYIGEVKGNDFKNVFLAQLRTAN 181

Query: 183 --THKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +  D   RQ ++L+ G  +  + + +D  I  F +Y    +   +  
Sbjct: 182 EQRPSVVVADSGYMKEDANGRQVVVLDQGTRYEGTALLRDFRITDFMNYQAVVDHRTTEV 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K   + +  L N                 +EFH RLT     V+  L+         
Sbjct: 242 RTDKVEQKTMMQLWNG----------NDPEINAEFHWRLTIVFSVVVMALM---VVPLSE 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI-PILYLFLFCISSIFLLM 353
           +  ++ ++  +  ++ +    F   S + +  ++        ++       ++ +++
Sbjct: 289 VNPRQGRVLSMIPAMLLYLIFFLLQSTLRNSADKGDIDPKYAMWAVNLGYLALAIVL 345


>gi|167561902|ref|ZP_02354818.1| hypothetical protein BoklE_05005 [Burkholderia oklahomensis EO147]
 gi|167569154|ref|ZP_02362028.1| hypothetical protein BoklC_04865 [Burkholderia oklahomensis C6786]
          Length = 382

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/380 (12%), Positives = 114/380 (30%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRVYEKYFARQIYVTFVFVLFAFSGLFFFFDLIGELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    + +  V   M  N+E  I   +G +    ++ +L + + + I  ++    
Sbjct: 61  FYEIIPVAALISSIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPIVIATYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           I P      +++  +A  +   +     ++                ++ + + +P++T+ 
Sbjct: 121 IGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGQLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK--------------- 216
            + I +       +                +L D    + + +S                
Sbjct: 181 DVRIYEFDSKFNLQNVRIAKRGRYQPPGHWLLTDVTDTQLTNVSGAGGQPADALNPVYRA 240

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
               +   S          S +++     +L  L      +     +  + Y     ++L
Sbjct: 241 RQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFR-YIQHLKENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A                I L +SF +F      I  +  N +  
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+      CI     L   K
Sbjct: 358 PLTAALPGCIYLALGLFALK 377


>gi|87198521|ref|YP_495778.1| permease YjgP/YjgQ [Novosphingobium aromaticivorans DSM 12444]
 gi|87134202|gb|ABD24944.1| permease YjgP/YjgQ [Novosphingobium aromaticivorans DSM 12444]
          Length = 414

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/368 (15%), Positives = 134/368 (36%), Gaps = 19/368 (5%)

Query: 1   MKSF---ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           MK     + YI R +    L   +    +  + ++L+  + V++    ++++ K+   L+
Sbjct: 1   MKLLTATDRYIARLVFVPMLSVFVLAASLLILDKMLKLFDFVATQGGPVSVVFKMLANLL 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P    +  P    +        +  ++EL ++   G S   L++     AI L+    + 
Sbjct: 61  PEYASLAIPLGLMLGILFAFRKLAMSSELDVMRAVGLSYTRLLRVPYMFAIALAALNLLI 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS-KYNPNNTLQGIFIV 176
            + ++P  R   +QL  + +     + +    F  L D   +++    +    L+GIF  
Sbjct: 121 VSYLQPLSRYYYEQLQFELRSGALGASIRVGEFNSLQDRTALRVDASRDEGRDLRGIFAR 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAI-----ILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
                    +  A+ G    +R++       L DG++ +  P      ++ F S+ L  +
Sbjct: 181 IQTANGQVMVISAREGRFFANRESPDTVILRLTDGQIVQDGPGIASPRVLSFASHDLPID 240

Query: 232 SANSSTIVLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                    +     +  L  LL    N+  Y  E+    ++  + RL +    V+  L+
Sbjct: 241 LPRIEQFRQRGDADREYFLPELLQIGWND-RYSEEIRNQSKASLNYRLVE---VVMMFLL 296

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY---IIHKIEQNPYYIPILYLFLFC 345
            ++A       ++      +F+S+ +         Y   +      +P         +F 
Sbjct: 297 PLLAVALAVPPKRSTSALGVFLSIVLVVAYHKVNQYGQDVAALGRMDPVIALWGPFVVFA 356

Query: 346 ISSIFLLM 353
              +++  
Sbjct: 357 ALIVWMYW 364


>gi|71899265|ref|ZP_00681427.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
 gi|71730998|gb|EAO33067.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
          Length = 385

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/368 (11%), Positives = 117/368 (31%), Gaps = 13/368 (3%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK F    + Y+ R +  + L++ L ++ +  V      +  +   + S    +    Y 
Sbjct: 18  MKLFPCLHDRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGKGSYSFGHAIAYIAYT 77

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P     + P    +     L  +   +EL  +   G SR  L   V+ +  + +  + +
Sbjct: 78  VPRRAYTLFPTAAVIGMLLGLGQLAATSELTALRALGVSRKRLSLSVMMVIGMGTGLMAL 137

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI- 175
           +   + P  ++    L A A+     +    + F+  + ++++            G  + 
Sbjct: 138 TGETLGPWAQAQADILKASAKYKSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIML 197

Query: 176 ------VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
                 +             ++  ++  +   IL   +    S             +  +
Sbjct: 198 ILHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFHSLPWRSR 257

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
            + A  +  + K  + ++  L+  +             +  ++  R    +  +   L +
Sbjct: 258 LDPAALAAGLAKPRNLSVHELVQ-SIEYRRRNHLDARDFEGQYWSRWFYPINVLALCLAA 316

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           I  +          K   + I  ++SF +   F   I  + +   Y     L    +   
Sbjct: 317 IPFSFGLLRSGGMGKRTFLGILFALSFWMLQMFFERIASVLK-LNYQIFYLLPPMVMLCG 375

Query: 350 FLLMIKKK 357
              + +++
Sbjct: 376 SYWLFRRQ 383


>gi|197105169|ref|YP_002130546.1| hypothetical protein PHZ_c1706 [Phenylobacterium zucineum HLK1]
 gi|196478589|gb|ACG78117.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 367

 Score = 87.4 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/362 (12%), Positives = 108/362 (29%), Gaps = 13/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPT 59
           +   E Y++  +      +   I  +  +IQ ++  + V +      + +  ++    P+
Sbjct: 4   LGRLERYVMGRMLAGVGAALAVISAVILLIQFVELSSQVGTRADVGASGIFALTLLRAPS 63

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ ++ PFCF          +NR +EL+ +   G S    I P   LA +L +      N
Sbjct: 64  LIQILLPFCFLFGGIGAFVGLNRKSELVAMRAAGVSAWRFILPSAALAAILGVLAVAVLN 123

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ-------G 172
                  +  +   A+          ++    + D+   I I   +              
Sbjct: 124 PFAAALNARFEAERARLMENYLGDRPQDVWIRQGDERTQIVIHAKDRETVAGAVVLKGVS 183

Query: 173 IFIVDSRDTQTHKIYYA-QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           +FI +       +     ++    L      L D         S     +  +S     +
Sbjct: 184 VFIYEKTPRGAPEFRRRLEAAEARLMPGFWRLRDVREAGVGESSIRSESLSIRS---TLD 240

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           +  +              L                 YR  F + L   +      +++  
Sbjct: 241 AEAAMERFASPEAIAFWRL-PAAIRLTEQAGFSAAGYRLRFQQLLATPVLFAAMTVLAAA 299

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            + +   +     +    ++L      F  F+  + K +  P +       L  + +   
Sbjct: 300 FSLRLVRLGGLAGLAGAGVALGFVMFFFNQFAGALAKADILPLFAAAWAPTLVALLAGVT 359

Query: 352 LM 353
           L+
Sbjct: 360 LL 361


>gi|94987323|ref|YP_595256.1| permease [Lawsonia intracellularis PHE/MN1-00]
 gi|94731572|emb|CAJ54935.1| predicted permeases [Lawsonia intracellularis PHE/MN1-00]
          Length = 366

 Score = 87.4 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/351 (13%), Positives = 114/351 (32%), Gaps = 7/351 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+++   +  L++    + +  +  + +R++    +  S  I+L    Y  P  
Sbjct: 1   MSLLFRYLIKNNTKILLLTLTIGIGVYILTDLFERLDNFIEAHTSTKIILTYFIYKTPFA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + PF F + T   L  M +  EL+ +   G S   +   ++  ++      FI    
Sbjct: 61  IAQILPFIFLISTVIQLCIMAKKKELIALQAGGISFTRIASIIIIASLFWGTIQFIFSEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I   C     Q+  +       S       +  D +  + I+   P++T  G        
Sbjct: 121 IGTACGRKSLQIWQEYVHNQHKSKTILKDIWFTDKNWIVSINTLKPDDTGSGFSAYLLDK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                     + S  +     IL    V   +  S+++      ++   +E+        
Sbjct: 181 NGLTIEKIIWALSFSIHNNEWILKKVAVSEPALYSQEMLQELTLTFNQSSETLKFIQNNN 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L     +        +E  ++ +H +L+     V+  L++           
Sbjct: 241 APQQLSFWEL-RETIHKLERSGSNVELLKTSWHTKLSYSFSLVVMALLATTIVAW----- 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            +  I+       +   ++   + I   +       PI+  ++  +  + +
Sbjct: 295 -KNNIYIAIAFSLLYTFIYNALNTIGISLGNKGIISPIIGAWIANLVIMSV 344


>gi|269121332|ref|YP_003309509.1| permease YjgP/YjgQ family protein [Sebaldella termitidis ATCC
           33386]
 gi|268615210|gb|ACZ09578.1| permease YjgP/YjgQ family protein [Sebaldella termitidis ATCC
           33386]
          Length = 360

 Score = 87.4 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 116/361 (32%), Gaps = 9/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YIL    + F++  L  + I  + + +     +     +L   +    Y +P +
Sbjct: 1   MNKLDRYILINYIKGFILGMLMFLLIFLLAESINVTGWIMEDKFTLKDSMVYIKYGLPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    + +   ++ M +  E+  +   G S    +   +  + L+S+F       
Sbjct: 61  LVNTAPLGILLGSLLSISKMAQRLEITAVKTAGISFRRFVLFPILFSALVSVFTVYISIN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT---LQGIFIVD 177
           I P+     +++  +       +   E     +  D    +     N     ++GI IVD
Sbjct: 121 ILPEANKMKREMKDRKLKEDDQTKKNEKKDVYIKLDKNRMLYASYVNKNKNLMEGIMIVD 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +          S S   + Q+ I + G +          + +    + L+        
Sbjct: 181 FHENLNGIKSIYVSPSATYNSQSKIWDFGSLKELDVEKNMENEILSSEFQLRATPNEILE 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +KA +  L  L   +               SE + RL+      I   I +    K  
Sbjct: 241 DQVKAKELTLKELREKSVYYSRV-GANTNDLFSELYNRLSFTFASFIMSFIGLSLGSKYV 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIK 355
              +      I +S+ I +  +   + +         +   +  +L      ++ + + +
Sbjct: 300 ---RGGAAINIGLSVLIGYSYYGISTMLRSMGPVVSVFPLYITAWLTNIVFFALGVYLFR 356

Query: 356 K 356
           K
Sbjct: 357 K 357


>gi|294637821|ref|ZP_06716093.1| inner membrane protein YjgP [Edwardsiella tarda ATCC 23685]
 gi|291089020|gb|EFE21581.1| inner membrane protein YjgP [Edwardsiella tarda ATCC 23685]
          Length = 366

 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 130/345 (37%), Gaps = 19/345 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +  V +     N++  + G  IP +  
Sbjct: 2   IIIRYLVRETFKSQVAILFILLLIFFCQKMVRILGAVVNGDIPTNLVFSLLGLGIPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  +  LIK  + LA         +   + 
Sbjct: 62  LILPLSLFLGLLMTLGRLYTESEITVMHACGLGKSVLIKAAMVLAFFTGALALANAFWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L E  F    D  Y+       +     +F+   R + 
Sbjct: 122 PWSSLHSDEVMAEAKANPGLASLAEGQFQPSQDGNYVLFVGNVKDKKFHDVFLAQLRPSG 181

Query: 183 --THKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q ++L+ G  +  + + +D  I  F  Y+      ++  
Sbjct: 182 SQRPSVVVADSGHLVEMKDGGQKVVLDSGTRYEGTAMLRDFRITDFVDYSALIGHKSTML 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A+  ++S L + +            ++R+EFH RLT     ++  L+         
Sbjct: 242 DPNNADQASMSALWHSDE----------PSFRAEFHWRLTLVFSVLVMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           +  ++ ++  +  ++ +    F   S +     +     P+++++
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSNGGK-GKLDPMIWMW 332


>gi|312795337|ref|YP_004028259.1| hypothetical protein RBRH_03151 [Burkholderia rhizoxinica HKI 454]
 gi|312167112|emb|CBW74115.1| Hypothetical membrane spanning protein [Burkholderia rhizoxinica
           HKI 454]
          Length = 365

 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 124/362 (34%), Gaps = 21/362 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E  + R +  +     L ++ +     +++ +   +S       ++ + G  + + + 
Sbjct: 2   ILERSLQRELAYTAGAVFLVLLTLVLTTMMIRIVGFAASGQIDPRDVVVLIGLTMISYVA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++  + G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLIATLFVSILFVLTRWYRDSEMVVWLSCGVSLTRLIKPIATFAAPIVVLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K +  + Q     S L    F     +  +   +    +  +   +  +    
Sbjct: 122 PWANEQSKLIRERFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQGRVENVFVTSTEN 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       +       + ++L +G  +   P   D  IM+F  Y ++ +S      
Sbjct: 182 GKVNVVVSKTGHTEIHPNGDRFVVLENGRRYDGEPGKPDFRIMEFARYGVKIQSRQLVNR 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               +    + L  PNP +            +EF  R    L  +   L++I  A     
Sbjct: 242 PTTTSLPTATLLREPNPTHL-----------AEFAWRAGLPLTALNLMLLAIPLAY---Q 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFC-ISSIFLLMIK 355
             +R +   + +++ I        + +   IEQ    +   +L L +      +F+  ++
Sbjct: 288 NPRRGRTINLVLAVLIYLTYSNLMNLVQAWIEQGKVAFVPGLLGLHVIVSAIVVFVFWLR 347

Query: 356 KK 357
            +
Sbjct: 348 VR 349


>gi|261377636|ref|ZP_05982209.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
 gi|269146390|gb|EEZ72808.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
          Length = 371

 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/365 (11%), Positives = 146/365 (40%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   ++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F    + +  +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSMVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L +G  +  +P   D + + F++ +L   +     
Sbjct: 182 KNGKDNIIFAKEGNFSLNDNKRTLDLRNGYRYSGTPGKADYNRVSFQNLSLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        S L+                +++E   R++  +  ++     ++A    
Sbjct: 242 DPVSHRRTIPTSQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I +++ +      G +++ + +   +  +++ +L + +   +   +L+ 
Sbjct: 289 YFNPRSGHTYNILVAIGLFLIYQNGLTFLRNAVEDGKIHFWLGLLPMHIIMFAIAVVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|262341159|ref|YP_003284014.1| putative YjgP/YjgQ family permease [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272496|gb|ACY40404.1| putative YjgP/YjgQ family permease [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 359

 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 120/362 (33%), Gaps = 11/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           MK  + YI+R +  +F+   + +  ++ VI I QR++ + ++  S+   L+    Y    
Sbjct: 1   MKILDRYIIRNLLITFIFITVSLQLLSVVIDISQRMHRLENNQGSIKKALIFYYPYWSIW 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +    +P    +      + +  N+E+  I ++G S   LI P L  AI++     +   
Sbjct: 61  LANTFSPISVFLSVIFFTSKLENNSEITAILSSGISLNRLIVPYLISAIMIGTVSLLINY 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLF---FRLDDDLYIKISKYNPNNTLQGIFIV 176
              P       Q   +  L+  +    E       ++  + YI I  ++    +   F+ 
Sbjct: 121 YFLPMANKKKNQFHYQYLLSSRYKNKYEKNQTISTQISKNEYIFIRNFSRKKNIGKEFVY 180

Query: 177 DSRDTQTHKIYYAQSGSI-DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              + +                ++  +L+D                 +K           
Sbjct: 181 QKFNGKKLIYILKSKNIFGYKKKKIYVLSDYRETTIKKNYDFFIKGDYKIKKFSFTPEEL 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                 A   N+  L      +   +   +  + +E+++R +      IF ++       
Sbjct: 241 LPEEYIAETMNIYEL--KKFIDIEKKNRNVNIHLNEYYQRTSLPFSTFIFTILGFSL--- 295

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            +  +     + I   +   F +F+     I+  +        ++L    +  I L    
Sbjct: 296 -SSKKSETGYNIILGIVLAVFYIFFMEITKIYSTKDTIPSYLSVWLPNVLLGIIALFFYW 354

Query: 356 KK 357
           K 
Sbjct: 355 KN 356


>gi|261401002|ref|ZP_05987127.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
 gi|269209119|gb|EEZ75574.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
          Length = 371

 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/365 (12%), Positives = 143/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ I  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWIIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L      +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGRFNTLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L DG  +  +P   D + + F+  +L   +     
Sbjct: 182 KNGNDNIIFAKEGNFSLNDNKRTLELRDGYRYSGTPGKADYNRVSFRHLSLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+                +++E   R++  +  ++     ++A    
Sbjct: 242 DPVSHRRTIPTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +   +   +L+ 
Sbjct: 289 YFNPRGGHTYNILIAIGLFLIYQNGLTLLFEAVENGKIHFWLGLLPMHIIMFAVALILLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|260062764|ref|YP_003195844.1| hypothetical protein RB2501_14279 [Robiginitalea biformata
           HTCC2501]
 gi|88784332|gb|EAR15502.1| hypothetical protein RB2501_14279 [Robiginitalea biformata
           HTCC2501]
          Length = 559

 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 94/295 (31%), Gaps = 21/295 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YIL+    +F  S + ++FI     I   I+ ++     + I+ K   YL+P +
Sbjct: 1   MRILDQYILKRFLTNFFSSFVILMFIFIFQTIWLFIDDLAGKGLDIIIIGKFLFYLMPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    + +     +   N E   +  +G S    + P++    LL    F   N 
Sbjct: 61  TEKVLPLTVLLSSILTFGAFAENYEFAAMKASGISLQRSMLPLIVFVSLLGFVTFYFANT 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     I  L          + + E +F   +        KY  N+      ++  + 
Sbjct: 121 VIPISEQKIYNLRRNIATLKPAAVITEGVFSDFEGKNIKVDRKYGENDRFLENVVIHEKS 180

Query: 181 T--QTHKIYYAQSGSIDLDRQAII----LNDGEVHR--KSPISKDISIMKFKSYTLQTES 232
              +   +  A +G +     + I    L DG  +         +     F      T  
Sbjct: 181 NLQRNTTVIKAATGELISGEGSDIIQLVLRDGHYYHEMTQASGSNQRTHPFAKADFDTYI 240

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRS------EFHKRLTQWLF 281
            N +              L  + N    R + +   R+      E + R+     
Sbjct: 241 MNIALPDN-------MEDLEADRNVETDRMKNVSRLRTDIDSIREHNFRVAAAFS 288



 Score = 53.1 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 37/104 (35%), Gaps = 6/104 (5%)

Query: 255 PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI 314
                   +    +    H +    L  +I   +    A   A++R+     P+ +++ +
Sbjct: 428 REELELSYKRYNRHILSLHNKFALALSCIILFFVG---APLGAIIRKGGLGLPMVVAIVL 484

Query: 315 SFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
            F  ++ F    +   +     P+L  +L    +  + + + ++
Sbjct: 485 -FLAYYFFGVFSNNYAKEGNIPPVLGAWLPTMIMLPLGVWLTRR 527


>gi|258544322|ref|ZP_05704556.1| membrane protein [Cardiobacterium hominis ATCC 15826]
 gi|258520402|gb|EEV89261.1| membrane protein [Cardiobacterium hominis ATCC 15826]
          Length = 350

 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 127/354 (35%), Gaps = 7/354 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+LR I  + L++  F++ + +++QI    + +     +L ILL     ++P  
Sbjct: 1   MTRFDRYLLRTILATSLIALAFLLAVDYIVQISVDADDLGQGNYTLAILLLQLLLVLPEK 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L + TP    + T   L  +    E+ ++   G SR+ L +  +  A+++ +   ++   
Sbjct: 61  LLLYTPAAVLIGTIMGLGQLAAQNEIAVVRAAGISRLRLARAGIAFALIVGVLNIVNGET 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+     + L  +A L  +     E   +    + +I I   NP+ +L  I       
Sbjct: 121 LAPQLADRSRLLRNQA-LGQSSDPGREQGIWLKQQNTHIHIGALNPDGSLARIRSYY--- 176

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           +    I  +++           L +    R      +      +S+           +  
Sbjct: 177 SDADSITISEADRATWQAPDWQLENPRAWRTRADKTERLTAP-ESWQNGATPQALHALSA 235

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             + + L  L               +    +  +RL   L      L+++      A   
Sbjct: 236 VKSAETLRELYTLTRF-MAANGLNHQQQSLKLWQRLLTPLTTAAMVLLALPFTFGNARSG 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSY-IIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           Q+       I L +++ V  G    +   +   P     L + +F +  + LLM
Sbjct: 295 QQGTRLVTGILLGVAYYVISGVIANLALLLHWPPLLGAALPILIFTLPPLILLM 348


>gi|94311740|ref|YP_584950.1| permease YjgP/YjgQ [Cupriavidus metallidurans CH34]
 gi|93355592|gb|ABF09681.1| predicted permease [Cupriavidus metallidurans CH34]
          Length = 372

 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/360 (10%), Positives = 119/360 (33%), Gaps = 17/360 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R +  +     L ++       +++ + + ++   S N +L + G      L 
Sbjct: 2   IFQQALRRELAYTAGAVFLVMLTFMLTSLVIRILGMAANGKASPNDVLMLIGLATIGYLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   +++E+++  ++G S   LIKPVL  A    +   +      
Sbjct: 62  ILLSATLFISTLIVLTRWYKDSEMVVWFSSGVSLRDLIKPVLQFAAPFFVMALLLGLFAW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P           + +     S +    F    +  Y+   +    +      +  +    
Sbjct: 122 PWANQQSALFRDRFEQRGVLSMIASGRFIEPANGNYVLFIEGIDADMKHARNVFVANAES 181

Query: 183 THKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                         ++    + +++  G  +   P   +  I++F  Y ++ ++      
Sbjct: 182 GKIGVALAHQGQFETMPNGDRLVVMEHGRRYAGIPGQLNYRIVEFDKYAVKVDNKPQDAA 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                          + +  +   +       E   R++  +    F +I+I  A    +
Sbjct: 242 ADLPT---------KSRDTIDLIRDPTRENLGELLWRISLPILAFNFVMIAIPLAY---V 289

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +  +  P+  ++ + +  +     +     ++      + ++   ++     ++  +Y
Sbjct: 290 NPRLGRYTPLVFAV-LIYLTYSNLINLAQAWVRSGAMSFWMAIWPIHLAVFLCALVMFRY 348


>gi|167835783|ref|ZP_02462666.1| hypothetical protein Bpse38_04778 [Burkholderia thailandensis
           MSMB43]
          Length = 383

 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/381 (11%), Positives = 115/381 (30%), Gaps = 28/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQAPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ ++ + + + I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           I P      +++  +A  +   +     ++                ++ + K +P++T+ 
Sbjct: 121 IGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGKLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT---- 227
            + I +       +                +L D    + + ++ + +     + +    
Sbjct: 181 DVRIYEFDSRFNLQNVRIAKSGRYQPPGHWLLTDVTDTQLTSLAGNGATSPADTLSPVYR 240

Query: 228 ------------LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
                               S +++     +L  L      +     +  + Y     ++
Sbjct: 241 AQQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFR-YIQHLKENQQDTQRYDIALWRK 299

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L       +  ++S+  A                I L +SF +F      I  +  N + 
Sbjct: 300 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWP 357

Query: 336 IPILYLFLFCISSIFLLMIKK 356
            P+      CI     L   K
Sbjct: 358 APLTAALPGCIYLALGLFALK 378


>gi|241761653|ref|ZP_04759740.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|260754018|ref|YP_003226911.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|283856464|ref|YP_163128.2| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241373961|gb|EER63494.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|258553381|gb|ACV76327.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|283775468|gb|AAV90017.2| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 403

 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/365 (11%), Positives = 121/365 (33%), Gaps = 13/365 (3%)

Query: 1   MKS---FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           M+     + Y++R I    + + +    +  + ++L+  + V++    ++++ ++   ++
Sbjct: 1   MRIFNAIDRYLIRLITVPLVTTLIVSAMLMVLDKMLKLFDFVANQGGPVSVVWRMLANML 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P  + +  P    +        +   +EL +    G S   L++     A   ++     
Sbjct: 61  PEYMSLGIPIGLTLGILLAFRKLALQSELDVFRAVGISYSRLLRIPYIFAFFFALVNLAI 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
              IEP      + L  + +     + ++   F +L   + +++     +          
Sbjct: 121 VGYIEPYSHYAYEDLRYELRSGALGAAIKVGEFTKLGTHMTLRVEGSQDSGRNLSGIFGT 180

Query: 178 SRDTQTHKI--YYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           S + +  +     A +G         +    LN G +    P      ++ F+++ +  +
Sbjct: 181 SENPENGQKLTVTADNGRFMPSDDPNVILLRLNHGLLIHNRPDFTTPRVLTFENHDMPIK 240

Query: 232 SANSST---IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                +         +  L+ L     +  +   +L    ++  H RL +     +  ++
Sbjct: 241 LPAVESFRGRDGNQQEMTLTELFF-ILHQKHLPKKLRNQLQANLHFRLVEVATMFLLPML 299

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           ++  A           +    + L     +      I    + NP  +  L   LF +  
Sbjct: 300 ALTLAIPPKRSTSSLGVFLSILILVTDHKLNQYCQTIGGLGKINPVLMMWLPFILFSLLV 359

Query: 349 IFLLM 353
             +  
Sbjct: 360 WRMYY 364


>gi|119899193|ref|YP_934406.1| hypothetical protein azo2903 [Azoarcus sp. BH72]
 gi|119671606|emb|CAL95519.1| conserved hypothetical membrane protein [Azoarcus sp. BH72]
          Length = 359

 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 120/362 (33%), Gaps = 18/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F   +LR   ++     + +  I   I +++ +   +      + +L + G+   T +P
Sbjct: 2   IFRRALLREFSQTAAAVFVALFAILVTIVLIRLLGQAAGGGVPSDAVLALIGFGALTEMP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V      +     L+   R++E+++   +G      I PVL  A+ +   +      + 
Sbjct: 62  VVLTLTLFVAVLLTLSRSYRDSEMVVWFASGVPLTAWIGPVLRFALPVVAVIAGMTLFLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +   + +       +   +F        +   +       +   +  S +  
Sbjct: 122 PWAHMKNAEYRERLESRDDTQRVAPGVFRESAGSRRVFFVEVGAGEDGRVRNVFVSDENG 181

Query: 183 THKI-YYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                  A  G +  D    + ++L  G  +   P + +  +M F+ Y++Q E+  ++  
Sbjct: 182 DRLSVIAAAEGYLKTDEEGNRFVVLEKGRRYDGKPGTPEYRVMSFERYSVQIEAKQAAAQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             ++  +    LL              +    E   R+   L  ++     ++A     +
Sbjct: 242 PQRSRARPTEELLR----------SPDDRNLGELAGRVGTPLAALLLA---LLAIPLSFV 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLMIKKK 357
             +  + + + +++          +     + Q    +   + L    +  +  LM  K+
Sbjct: 289 NPRAGRTNNLLVAILTYLIYSNAITIGQAWVAQGRLRFELAVLLPHLVVLGLLALMFYKR 348

Query: 358 YT 359
             
Sbjct: 349 LA 350


>gi|330818019|ref|YP_004361724.1| Permease, putative [Burkholderia gladioli BSR3]
 gi|327370412|gb|AEA61768.1| Permease, putative [Burkholderia gladioli BSR3]
          Length = 363

 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/367 (15%), Positives = 128/367 (34%), Gaps = 22/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S   S   +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGQVSPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +    VLT   +++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  MILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K + A+ Q     S L    F        +   +    +      +  +   Q
Sbjct: 122 PWSNQQSKLIKARFQQRDEVSLLAPGQFRESPSTNRVFFIEKMSADQAAVQNVFVTTTEQ 181

Query: 183 THKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                       + +     + I+L +G  +   P   +  IM+F+ Y ++ +S    T 
Sbjct: 182 GKVNVVVSQTGHTETAQNGDRFIVLENGRRYDGVPGQPNFKIMQFERYGVKIQSKQVVTQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               +   L  L +P   N            +EF  R+   L  +   +++I  A     
Sbjct: 242 PTTTSTPTLDLLRDPTDENL-----------AEFAWRVGLPLIAINLMILAIPLAY---Q 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI----PILYLFLFCISSIFLLMI 354
             +R +   + +++ I        + +  +IE+          +L+L +  I +    M 
Sbjct: 288 NPRRGRTVNLVMAVLIYLTYSNLLNVMQSQIERGKIPFGVGLVVLHLVVAGIVAFLFWMR 347

Query: 355 KKKYTKI 361
            +    I
Sbjct: 348 VRNRPLI 354


>gi|325132745|gb|EGC55428.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M6190]
          Length = 396

 Score = 87.0 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 141/365 (38%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 27  IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 86

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 87  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVI 146

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F    + +  +Y   +    +  ++ +F+ +  
Sbjct: 147 PWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 206

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L   +     
Sbjct: 207 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 266

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+                +++E   R++  +  ++     ++A    
Sbjct: 267 DPVSHRRTIPTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 313

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +       +L+ 
Sbjct: 314 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 373

Query: 355 KKKYT 359
            +   
Sbjct: 374 VRSMP 378


>gi|83313005|ref|YP_423269.1| permease [Magnetospirillum magneticum AMB-1]
 gi|82947846|dbj|BAE52710.1| Predicted permease [Magnetospirillum magneticum AMB-1]
          Length = 367

 Score = 87.0 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 100/355 (28%), Gaps = 7/355 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
               YI R    +F    L I+ I  +  +++ I   +      +  +L ++ + +P +L
Sbjct: 6   IMSGYIGRQFASAFATVLLVILGIILLFDVIELIRRAAGRPELGITPILLMAFFKLPQML 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   + +      + R  EL++    G S    I PVL +A +  IF   + N +
Sbjct: 66  HTILPFAVMIGSMVCFWRLTRTHELVVARAAGISVWQFITPVLAVAGIFGIFEITTFNPM 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
                   ++L  +       ++    +   L +         +     Q   ++  RD 
Sbjct: 126 AAAMYGRYERLQDELLATKASAFDISEVGLWLREPHENGEMVVHSETVRQDGLVLHIRDA 185

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVH----RKSPISKDISIMKFKSYTLQTESANSST 237
                         +  ++  L DG             K     +      Q        
Sbjct: 186 HFFLYDRPDHFHQRISAESATLVDGAFEVRRAWVMEGGKPSVFKEQMHIPTQLTLDRIHD 245

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   +   L                 +R      L   +      L++ V + +  
Sbjct: 246 NFASPETLSFWQL-PGFIRFFERAGFTANKHRLYLQSLLASPVLYCGMVLMAAVFSLRPN 304

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
             R    +  I   ++  F V++    I            +        + +  L
Sbjct: 305 T-RSGGLLARIGAGVAAGFAVYFFSKVIYALGLSATLPQTLAAWTPPLFAGLIGL 358


>gi|281356604|ref|ZP_06243095.1| permease YjgP/YjgQ family protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316731|gb|EFB00754.1| permease YjgP/YjgQ family protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 419

 Score = 87.0 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/419 (11%), Positives = 114/419 (27%), Gaps = 62/419 (14%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YILR     + +  L  V +  +  + + I+    +  S   +L+  GY +P  
Sbjct: 1   MPKLDGYILREFLIKYSVLLLVFVILFILSDVYRDISDFLEAKASYRSILQYLGYKLPGN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +     + +  +N E+  +  +G S       +  + ++++         
Sbjct: 61  VRFILPISMLLGCMWTMATFGKNMEITAMRASGVSLFRCGGSIFVVGLIVTAVNIYFNEA 120

Query: 121 IEPKCRSTIKQL-------SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
           + P      +++           Q  LT+   ++   +        +  +     T    
Sbjct: 121 LVPYTERRAEEIRSEVADGRKYVQNLLTYRSTDQQRHWLFKTFTTDEAQQNVTVKTFWTD 180

Query: 174 FIVDS---------------------------------------RDTQTHKIYYAQSGSI 194
            ++D                                                ++A   S 
Sbjct: 181 GMIDDIVLGAGDAEFDALIRQMFRLKADRILALSREERAKEIRKELKGRKVDFFANRVSY 240

Query: 195 DLDRQAIILNDGEVHRKSPISKD----------------ISIMKFKSYTLQTESANSSTI 238
           D  ++A   +DG         +                    + F    +     +    
Sbjct: 241 DAGKKAWTFSDGNFTSYDRNDETKFEASRGTSTMHDPQPYKSIVFNEKEIPEAPDDIMNS 300

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           + + +D     + +    N N    +   Y + F+ RL       +   + I  A K   
Sbjct: 301 IKEKDDLPTLVIWDLVRRNDNMPDRVYSIYMTVFYYRLAFPWACFLAVFLGIPLATKNER 360

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 I      + +   V   F  +      NP +  +     F     + ++  + 
Sbjct: 361 TGSLMAIITAVGIIIVYIVVAQVFLVLGKGGILNPVFAGLAPTLAFIGCGAYRILHDRN 419


>gi|288958014|ref|YP_003448355.1| hypothetical protein AZL_011730 [Azospirillum sp. B510]
 gi|288910322|dbj|BAI71811.1| hypothetical protein AZL_011730 [Azospirillum sp. B510]
          Length = 364

 Score = 86.6 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 108/355 (30%), Gaps = 13/355 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTVL 61
           +   YI R     F +  + ++ I  ++  ++ +    +    +  ++++++   +P + 
Sbjct: 6   TLSRYIGRQFIFWFCLLMVILLAIVLLLDTVELLRRAGTKPHVTFGLVVEMALLKLPEIG 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILL-----SIFLFI 116
             + PF            + R+ EL++    G S    + PV+F A  +     ++   +
Sbjct: 66  QQIFPFVILFAGMFTFWRLTRSAELVVARAVGVSAWQFLMPVMFAAAAIGVVKVTLVNPV 125

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
               I    +   + L  ++                  +  +I     NP        +V
Sbjct: 126 GAVFIAKYDQLQDRYLKLQSSSLNISRSGLWLRQTNETEQFFIHAELVNPATFELSNVVV 185

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              D   + +    + S  L  +   L D      +   KD   +   +   + + A   
Sbjct: 186 FLFDADQNYLARVDAPSAVLRERKWELQDA---ILNRAKKDPEKLDSYTIPTELDMATIE 242

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                    +   L     +           +R  +   L Q    +   L +   +   
Sbjct: 243 ESFAPPETISFWELPR-FIHTLETTGFPAVRHRLHYQSLLAQPFLFLAMVLFAAAFSL-- 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            L R+   +  +   +   F +F     ++     +     I+  +     S+ L
Sbjct: 300 RLPRRGGTMAMVTGGVLTGFVLFVMTD-VVRTFGMSETIPIIMAAWSPAGISLLL 353


>gi|149186432|ref|ZP_01864745.1| predicted permease [Erythrobacter sp. SD-21]
 gi|148830021|gb|EDL48459.1| predicted permease [Erythrobacter sp. SD-21]
          Length = 365

 Score = 86.6 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 111/356 (31%), Gaps = 6/356 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y+ +      L   + +V +  ++ +L     + +        LLK +   +P ++
Sbjct: 10  TLTRYLAKLFVVRILAVLVMLVLVLMMLDLLSNSGKILAVEGNGQGELLKYASLRVPQLI 69

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P+   + T   L ++N+N+E++ +   G S   ++ P+L  A+++    F+    +
Sbjct: 70  QRFLPYSVLLATLISLVTLNQNSEVIAMKAAGLSAHQVLAPLLLTALVVGGVSFVFNERV 129

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIVDSR 179
             +  +T+K   A     +          +  D    +  ++   +             R
Sbjct: 130 VTRATATLKAWDAADWGPVPEESSVRANVYLADGSNVLTAAQLTGSGDAIRMRDVTWYRR 189

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +   +    +           L +  + R    +   S                    
Sbjct: 190 SPEGTIVEQVDAARATYAGPGWRLEN--IERFEVAAAASSTGDSLVVGEGLTPDQIDLAK 247

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +  +      L     +            R+++  +L+  L   +  L+  VAA   A  
Sbjct: 248 IDPDAVPFWEL-GERIDAFEDAGRRTGEMRAKWWHKLSGPLSSFLMPLLGAVAAFGLARS 306

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            Q      I ++L  ++ V    +  +      P  +     F         ++I+
Sbjct: 307 GQLFVRALIGMALGFAYFVVDNAALAMGNFGGYPPLLAAWAPFFLFALIGETVLIR 362


>gi|212710411|ref|ZP_03318539.1| hypothetical protein PROVALCAL_01472 [Providencia alcalifaciens DSM
           30120]
 gi|212686831|gb|EEB46359.1| hypothetical protein PROVALCAL_01472 [Providencia alcalifaciens DSM
           30120]
          Length = 365

 Score = 86.6 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 127/357 (35%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  + +  +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFVLLLIFFSQKSIDILGAAVQGNIPSNLVLPLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +   +E+ ++   G  +  L+K  L LA L ++    +   + 
Sbjct: 62  LILPLSLFLGLLMTYSKLYTESEITVMHACGLGKSVLVKAALVLAALTALVAVANITWML 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q+ A A+     + + E  F    D  ++        N  + +F+   R   
Sbjct: 122 PWSSQYQEQVLADAKANPGLAAMVEGQFKTTKDGNFVLYIGEVKGNDFKNVFLAQLRTAN 181

Query: 183 --THKIYYAQSGSIDLDRQ---AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +  D      ++L+ G  +  + + +D  I  F +Y    +   +  
Sbjct: 182 EQRPSVVVADSGYMKEDEYGRQMVVLDQGTRYEGTAMLRDFRITDFVNYQAVVDHKATDV 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K   + +  L N +               +EFH RLT     V+  L+         
Sbjct: 242 STDKVEQKTMMQLWNED----------NPEVNAEFHWRLTIVFSVVVMALM---VVPLSE 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI-PILYLFLFCISSIFLLM 353
           +  ++ ++  +  ++ +    F   S + +  ++        ++        + +++
Sbjct: 289 VNPRQGRVLSMIPAMLLYLIFFLLQSTLRNSADKGDIDPKYAMWAVNLGYLLLAVIL 345


>gi|309378516|emb|CBX22869.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 371

 Score = 86.6 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 144/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ I  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWIIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L      +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGRFNTLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++A+ L DG  +  +P   D + + F+  +L   +     
Sbjct: 182 KNGNDNIIFAKEGNFSLNNNKRALELRDGYRYSGTPGKADYNRVSFRHLSLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+                +++E   R++  +  ++     ++A    
Sbjct: 242 DPVSHRRTIPTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +   +   +L+ 
Sbjct: 289 YFNPRGGHTYNILIAIGLFLIYQNGLTLLFEAVENGKIHFWLGLLPMHIIMFAVALILLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|308451108|ref|XP_003088547.1| hypothetical protein CRE_17759 [Caenorhabditis remanei]
 gi|308246904|gb|EFO90856.1| hypothetical protein CRE_17759 [Caenorhabditis remanei]
          Length = 341

 Score = 86.6 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 113/338 (33%), Gaps = 19/338 (5%)

Query: 27  AWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTEL 86
               Q+++R    +      +ILL I G+ +P  L ++ P  F +    V   +  + E+
Sbjct: 1   MMGGQLIKRFGQAAMGRVDPSILLSIIGFRLPEFLTLILPLGFFIGLMLVFGRLYVDHEM 60

Query: 87  LIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLE 146
            +++ +G SRI + + ++ L ++      +    + P      +QL +   +   F  + 
Sbjct: 61  AVLNGSGISRIQVARLLIPLTVIYLCVQSVLMIWMSPWGIRQYEQLISTQAVRTGFDLVR 120

Query: 147 ENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAII---- 202
              F           S       L+ IF     + +        +        A      
Sbjct: 121 PREFISSGAYTIYAGSLSEDRKNLKDIFFYQRAEKEGKPDVMILAKEATRIEIANETASV 180

Query: 203 --LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND-QNLSFLLNPNPNNPN 259
             L +G  +   P +   S  +F+SY L+ E+   +       +  +   LL        
Sbjct: 181 VDLVEGRRYEIYPGTPKYSQTEFQSYRLRLENNKEAKFESDEVEGLSFGKLLE------- 233

Query: 260 YRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
                     SE   RL      ++  +++        +  ++ +   +F +L I   + 
Sbjct: 234 --NRNDPVVASELGWRLFVPFSIIVALMLATALC---EVSPRQGRYLKLFPALLIFASLI 288

Query: 320 WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                I  +I ++   +      L   +    L  +K+
Sbjct: 289 VALMAIRTRISKDEVGVWAYPAVLLFYAVAAALFSRKQ 326


>gi|71901306|ref|ZP_00683403.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
 gi|71728926|gb|EAO31060.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
          Length = 385

 Score = 86.6 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/368 (11%), Positives = 115/368 (31%), Gaps = 13/368 (3%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK F    + Y+ R +  + L++ L ++ +  V      +  +   + S    +    Y 
Sbjct: 18  MKLFPCLHDRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGKGSYSFGHAIAYIAYT 77

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P     + P    +     L  +   +EL  +   G SR      V+ +  + +  + +
Sbjct: 78  VPRRAYTLFPTAAVIGMLLGLGQLAATSELTALRALGVSRTRSSLSVMMMIGMGTGLMVL 137

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI- 175
           +   + P  ++    L A A+     +    + F+  + ++++            G  + 
Sbjct: 138 TGETLGPWAQAQADILKASAKYKSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIML 197

Query: 176 ------VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
                 +             ++  ++  +   IL   +    S             +  +
Sbjct: 198 ILHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFHSLPWRSR 257

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
            + A  +  + K  + +   L+  +             +  ++  R    +  +   L +
Sbjct: 258 LDPAALAAGLAKPRNLSAHELVQ-SIEYRRRNHLDARDFEGQYWSRWFYPINVLALCLAA 316

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           I  +          K   + I  ++SF +   F   I  + +   Y     L    +   
Sbjct: 317 IPFSFGLLRSGGMGKRTFLGILFALSFWMLQMFFERIASVLK-LNYQIFYLLPPMVMLCG 375

Query: 350 FLLMIKKK 357
              + +++
Sbjct: 376 SYWLFRRQ 383


>gi|325136763|gb|EGC59363.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M0579]
 gi|325208502|gb|ADZ03954.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           NZ-05/33]
          Length = 396

 Score = 86.6 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 141/365 (38%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 27  IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 86

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 87  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVI 146

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F    + +  +Y   +    +  ++ +F+ +  
Sbjct: 147 PWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 206

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L   +     
Sbjct: 207 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 266

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+                +++E   R++  +  ++     ++A    
Sbjct: 267 DPVSHRRTIPTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 313

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +       +L+ 
Sbjct: 314 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 373

Query: 355 KKKYT 359
            +   
Sbjct: 374 VRSMP 378


>gi|161870424|ref|YP_001599597.1| hypothetical protein NMCC_1472 [Neisseria meningitidis 053442]
 gi|161595977|gb|ABX73637.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 432

 Score = 86.6 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 141/365 (38%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 63  IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 122

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 123 LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVI 182

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F    + +  +Y   +    +  ++ +F+ +  
Sbjct: 183 PWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 242

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L   +     
Sbjct: 243 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 302

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+                +++E   R++  +  ++     ++A    
Sbjct: 303 DPVSHRRTIPTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 349

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +       +L+ 
Sbjct: 350 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 409

Query: 355 KKKYT 359
            +   
Sbjct: 410 VRSMP 414


>gi|315223351|ref|ZP_07865210.1| YjgP/YjgQ family permease [Capnocytophaga ochracea F0287]
 gi|314946682|gb|EFS98671.1| YjgP/YjgQ family permease [Capnocytophaga ochracea F0287]
          Length = 495

 Score = 86.6 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 109/304 (35%), Gaps = 22/304 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI+     +FL +   +V I     I   I+ ++     L I+ K   Y IP +
Sbjct: 1   MKILDRYIITQFLTNFLGALSILVLIFVFHTIFTYIDELAGRGLELWIIFKFLIYFIPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ P    + +     +   N E   +  +G S + +++P++ L  LLS+  F   N 
Sbjct: 61  IPIIMPLAVVIASIMTFGAFAENYEFAAMKASGISLMRVMRPLIILMALLSLGTFFLANN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +  L +          + E +F  + +D+ IK+ K   +N      ++  + 
Sbjct: 121 VIPVAYREVYTLRSNIAKVKPAMAIAEGVFSNIGEDISIKVGKKRGDNDEFLENVLIHKK 180

Query: 181 TQTHKIYYAQSG--------SIDLDRQAIILNDGEVHRKSPISKD-------ISIMKFKS 225
           T         +           + +   +IL DG  +     +          + + FK 
Sbjct: 181 TPDKVNRTVINAKRGELKSSKTNSNFLQLILEDGTYYEDIKTNSYEAQQKEPFAKVYFKK 240

Query: 226 YTLQTE-------SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
           Y +  +       + N  T        N+  L     +      + +  Y +   +R   
Sbjct: 241 YIINLDLSHLNNVNFNEKTDATTYRMMNVGQLNYAIDSLRTDFKQNITDYGNNMFRRTGF 300

Query: 279 WLFP 282
            + P
Sbjct: 301 SVAP 304



 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 255 PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI 314
            ++  YR +L+  +      +    +   +   ++   A   A +R+     P+ I++ +
Sbjct: 361 QSDLEYRYKLMNLHILNLSDKFALTVACFVLFFVA---APLGAFIRKGGIGMPLVIAMIL 417

Query: 315 SFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
               ++   ++ + I +N    P L  ++  +  +
Sbjct: 418 FLAYYFIGMFMKN-IAENNTINPALAPWIPALILL 451


>gi|295689677|ref|YP_003593370.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
 gi|295431580|gb|ADG10752.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
          Length = 367

 Score = 86.6 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/359 (11%), Positives = 100/359 (27%), Gaps = 7/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPT 59
           M   E Y+L+    + + +   +  +  +I  +     V +    +   LL ++    P 
Sbjct: 4   MGMLERYVLKRSMSALVGALAVLGAMVMLIAFVDIARNVGTRADVNFFQLLYLTVLQAPA 63

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + ++ PF F   T      +NR +EL+ +   G S    I P    + ++ +      N
Sbjct: 64  TILVLAPFVFLFGTMWAFVELNRRSELIAMRAAGVSAWRFIMPAATASFVIGLLTITLLN 123

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI-----F 174
            +     +  +            +        + DD   I I     +     +      
Sbjct: 124 PLTTAMTARFETERDHMMNGYLNNAPRGTWLRQGDDKTQIVIRARGRDMIDGSVRLRGVS 183

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +      +   + + +    +  R           R++            S     +   
Sbjct: 184 LFVYTLNKKGVMDFTRRIEANEARLEPGFWRLTGVREATPGAGAIRSDSLSIPSNLDDRT 243

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +S          L  L                 ++    + L   L      +++   + 
Sbjct: 244 ASERFNTPQAVALWRL-PATIKRAEDAGFSAAPFKLRLQQDLATPLLFSAMSVLAAAFSL 302

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +   +     +    ++L   F  F      + K +     I      +  I + F L+
Sbjct: 303 RLMRLGGLAALAGSGVALGFGFFFFNELCSTLGKADVLAPSIAAWTPPIVAILAGFTLL 361


>gi|16125935|ref|NP_420499.1| hypothetical protein CC_1690 [Caulobacter crescentus CB15]
 gi|221234698|ref|YP_002517134.1| hypothetical protein CCNA_01761 [Caulobacter crescentus NA1000]
 gi|13423101|gb|AAK23667.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220963870|gb|ACL95226.1| hypothetical membrane spanning protein [Caulobacter crescentus
           NA1000]
          Length = 368

 Score = 86.6 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/361 (11%), Positives = 94/361 (26%), Gaps = 11/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPT 59
           M   E Y+L+    + + +   +  +  +I  +     V +    S   LL ++    P 
Sbjct: 5   MGMLERYVLKRTMGALVGALAVLSAMVMLIAFVDIARNVGTRADASFLRLLYLTILQAPA 64

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + ++ PF F   T      +NR +EL+ +   G S    I P    + ++ +      N
Sbjct: 65  TILVLAPFIFLFGTMWAFVELNRRSELIAMRAAGISAWRFIMPAAASSFVIGLLTITLLN 124

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI------ 173
            +     +  +    +          +     + DD   I I           +      
Sbjct: 125 PLTTAMTAKFETERDRTMNGYLKEAPKGTWLRQGDDKTQIVIRARARELVDGSVRLRGVS 184

Query: 174 -FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
            F+                 +            G            S     S     + 
Sbjct: 185 LFVYTLNAKGVMDFTRRIEANEARLEPGFWRLSGVREATPGAGAIRSDS--LSIPSNLDD 242

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
             +S          L  L                 ++    + L   L      +++   
Sbjct: 243 RTASERFNTPQAVALWRL-PATIQRTADAGFSAVPFKLRLQQDLATPLLFAAMSVLAAAF 301

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           + +   +     +    ++L   F  F      + + +    ++         +   F L
Sbjct: 302 SLRLMRLGGLAMLAGSGVALGFGFFFFNELCSTLGRADVLAPFVAAWTPPTVALLVGFTL 361

Query: 353 M 353
           +
Sbjct: 362 L 362


>gi|307824319|ref|ZP_07654545.1| permease YjgP/YjgQ family protein [Methylobacter tundripaludum
           SV96]
 gi|307734699|gb|EFO05550.1| permease YjgP/YjgQ family protein [Methylobacter tundripaludum
           SV96]
          Length = 357

 Score = 86.6 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 114/357 (31%), Gaps = 3/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R I +  L++ L ++ +  +     ++  +      L  +        P+V
Sbjct: 1   MNVLTGYIVREILKGSLVATLLLLTLFNLFTFSDQLKDLGKGHYGLTEIFYYLALTSPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    + +  +L +M  N EL+ +   G S + +I+ V+   ++L +   +    
Sbjct: 61  FYELMPASALLGSLFILGAMGNNRELIAMRAAGLSILGIIRAVMLAGLILVVVSILVGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + +   A          +   +  +   +I + K   +  L  I I +  D
Sbjct: 121 VAPVAERAAQMIKVNAVDEGRVVMNVKYGLWLREGKKFINVRKMQDDGNLADISIYELDD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +       ++    Q   L   +    S      S    + +           +V+
Sbjct: 181 QRRLRYSIHAEKAVFQGNQQWKLEGIKQSGISIDQMTASNQNEQIWQSTVAPDLLDIVVV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            A+D ++  L     +      +    +   F  R+   L  ++  L+S        + R
Sbjct: 241 NAHDLSMYDL-AMYVDFLKDNHQKSHEFELAFWGRVVNPLVVLVMLLVSAPFVI--GVKR 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  + I + I  G       + H         P++ +          L    +
Sbjct: 298 GINVGGRMMIGVVIGMGFNIIDKIVGHLGLIYDLNPPLMAVTPSLTVLALALFALSR 354


>gi|87306756|ref|ZP_01088903.1| hypothetical protein DSM3645_10492 [Blastopirellula marina DSM
           3645]
 gi|87290935|gb|EAQ82822.1| hypothetical protein DSM3645_10492 [Blastopirellula marina DSM
           3645]
          Length = 380

 Score = 86.2 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 113/363 (31%), Gaps = 33/363 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++ + Y++  + + F +  L  V +  V   +             +I+L +  Y +P +
Sbjct: 1   MRTIQTYVVWEVFKIFFLCLLATVLLMVVGGGVNE---GLKKGLPPSIILGMMPYFVPEM 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P C       V   M+ + E++ + + G + I +I PVL     LS   F   ++
Sbjct: 58  LRFTIPGCLLFSICTVFGRMSASNEIVALKSAGINPIEIIWPVLVATYALSFVTFGLYDV 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                R  + ++  ++ L  T   +             +++   +    ++    V + +
Sbjct: 118 CAGWSRPNMHRIIIQS-LDDTAYSMLRTQKSFSMQGFSVRVKGVDDRRLIEPFITVQTPN 176

Query: 181 TQTHKIYYAQSGSIDLDRQAIILN---DGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                   A+   ++ + +   L              +    +  F     Q  + +   
Sbjct: 177 GGPEFTLTAEEAELESNPETGALQVVCRNSFMEYGDGTNFSQVEPFVHQITQLGTLDQDL 236

Query: 238 IVLKANDQNLS----------FLLNPNPNNPNYRP-------------ELLETYRSEFHK 274
                    L            LL    N  +                + L   ++E  +
Sbjct: 237 NSASPAALTLRHIPAQIAREAKLLEDTINALHIGGDPEAIAYAAEGHQKRLWRLQAERQR 296

Query: 275 RLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           RL+  L    F  + I  A  R   R    +   F+      GV++        + ++  
Sbjct: 297 RLSNGLGCFCFACVGIPVAMWR---RTSDNVTTFFLCFLPILGVYYPLLVTGETMARDGV 353

Query: 335 YIP 337
             P
Sbjct: 354 LAP 356


>gi|301628860|ref|XP_002943564.1| PREDICTED: lipopolysaccharide export system permease protein
           lptG-like [Xenopus (Silurana) tropicalis]
          Length = 350

 Score = 86.2 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/353 (12%), Positives = 103/353 (29%), Gaps = 30/353 (8%)

Query: 32  ILQRINLVSS--STESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLII 89
           ++  +  VS       L+  L      +P  L  + P    + T  V+  + +++E  I+
Sbjct: 1   MIDELRWVSRAPGGYQLSHALLTVVLRLPNYLYELLPISVLIGTIYVMARLAQSSEFTIM 60

Query: 90  DNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS--TIKQLSAKAQLALTFSYLEE 147
             +G      ++ +L L        F   + + P       + ++    QL    +    
Sbjct: 61  RTSGMGPGRALRMLLVLGCAFVALTFAMGDYVAPMANRAGQMLKVRYLGQLTTGATGGWL 120

Query: 148 NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQS-------------GSI 194
                    L + +    P+  + GI I D  D          +                
Sbjct: 121 KERKDDGHSLAVNVRALGPDGQMIGIRIFDFDDQGRLSAQLQAASAQVAQTAQTAQTAED 180

Query: 195 DLDRQAIILNDGEVHRKSPISKDISIMKF-----KSYTLQTESANSSTIVLKANDQNLSF 249
             D    +L   +  R      D + ++        +     +   S  +LK        
Sbjct: 181 AADAPGWVLTQAQQRRFVLRGADQAHVEQTDSASMRWPTGITAEMVSAALLKPERMPTIE 240

Query: 250 LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIF 309
           L     ++     +  + Y  EF +++   L  ++  ++++  A      R       +F
Sbjct: 241 LFQ-YISHLEANGQSAQKYEIEFWRKVFYPLSCLVMVVLALPFAYL--HFRSGGLAAYVF 297

Query: 310 ISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI-----SSIFLLMIKKK 357
             +      F   +   +      +   +       I      + F  ++ ++
Sbjct: 298 GGVMAGISFFLLNTVSGYAGTLQNWSPWLTAAAPGLIYSAASLAAFGWLVLRR 350


>gi|296315184|ref|ZP_06865125.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
 gi|296837908|gb|EFH21846.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
          Length = 371

 Score = 86.2 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 144/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F    + +  +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVYFVETFNTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L+DG  +  +P   D + + F+  +L   +     
Sbjct: 182 KNGNDNIIFAKEGNFSLNDNKRTLDLHDGYRYSGTPGKADYNRVSFQHLSLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+                +R+E   R++  +  ++     ++A    
Sbjct: 242 DPVSHRRTIPTAQLI----------GSSNPQHRAELMWRISLTVSVLLLC---LLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|71275897|ref|ZP_00652180.1| permease YjgP/YjgQ [Xylella fastidiosa Dixon]
 gi|170729352|ref|YP_001774785.1| hypothetical protein Xfasm12_0116 [Xylella fastidiosa M12]
 gi|71163274|gb|EAO12993.1| permease YjgP/YjgQ [Xylella fastidiosa Dixon]
 gi|167964145|gb|ACA11155.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 368

 Score = 86.2 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/368 (11%), Positives = 117/368 (31%), Gaps = 13/368 (3%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK F    + Y+ R +  + L++ L ++ +  V      +  +   + S    +    Y 
Sbjct: 1   MKLFPCLHDRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGKGSYSFGHAIAYIAYT 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P     + P    +     L  +   +EL  +   G SR  L   V+ +  + +  + +
Sbjct: 61  VPRRAYTLFPTAAVIGMLLGLGQLAATSELTALRALGVSRKRLSLSVMMVIGMGTGLMAL 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI- 175
           +   + P  ++    L A A+     +    + F+  + ++++            G  + 
Sbjct: 121 TGETLGPWAQAQADILKASAKYKSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIML 180

Query: 176 ------VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
                 +             ++  ++  +   IL   +    S             +  +
Sbjct: 181 ILHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFHSLPWRSR 240

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
            + A  +  + K  + ++  L+  +             +  ++  R    +  +   L +
Sbjct: 241 LDPAALAAGLAKPRNLSVHELVQ-SIEYRRRNHLDARDFEGQYWSRWFYPINVLALCLAA 299

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           I  +          K   + I  ++SF +   F   I  + +   Y     L    +   
Sbjct: 300 IPFSFGLLRSGGMGKRTFLGILFALSFWMLQMFFERIASVLK-LNYQIFYLLPPMVMLCG 358

Query: 350 FLLMIKKK 357
              + +++
Sbjct: 359 SYWLFRRQ 366


>gi|15836745|ref|NP_297433.1| hypothetical protein XF0140 [Xylella fastidiosa 9a5c]
 gi|9104926|gb|AAF82953.1|AE003867_7 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 368

 Score = 86.2 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/368 (11%), Positives = 116/368 (31%), Gaps = 13/368 (3%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK F    + Y+ R +  + L++ L ++ +  V      +  +   + S    +    Y 
Sbjct: 1   MKLFPCLHDRYVARAVVATVLLTWLVLLGLDVVNAFASEVRDIGKGSYSFGHAIAYIAYT 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P     + P    +     L  +   +EL  +   G SR  L   V+ +  + +  + +
Sbjct: 61  VPRRAYTLFPTAAVIGMLLGLGQLAATSELTALRALGVSRKRLSLSVMMMIGMGTGLMAL 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI- 175
           +   + P  ++    L A A+     +    + F+  + ++++            G  + 
Sbjct: 121 TGETLGPWAQAQADILKASAKYQSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIML 180

Query: 176 ------VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
                 +             ++  ++  +   IL   +    S             +  +
Sbjct: 181 ILHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFHSLPWRSR 240

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
            + A  +  + K  + +   L+  +             +  ++  R    +  +   L +
Sbjct: 241 LDPAALAAGLAKPRNLSAHELVQ-SIEYRRRNHLDARDFEGQYWSRWFYPVNVLALCLAA 299

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           I  +          K   + I  ++SF +   F   I  + +   Y     L    +   
Sbjct: 300 IPFSFGLLRSGGMGKRTFLGILFALSFWMLQMFFERIASVLK-LNYQIFYLLPPMVMLGG 358

Query: 350 FLLMIKKK 357
              + +++
Sbjct: 359 SYWLFRRQ 366


>gi|317051997|ref|YP_004113113.1| permease YjgP/YjgQ family protein [Desulfurispirillum indicum S5]
 gi|316947081|gb|ADU66557.1| permease YjgP/YjgQ family protein [Desulfurispirillum indicum S5]
          Length = 356

 Score = 86.2 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 122/361 (33%), Gaps = 11/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M    LY  R       ++   +V +  V+ I+  ++  +    S   +    G  +   
Sbjct: 1   MTLL-LYTFRQYLHIIFLAMAVLVALYGVVDIIGNLDDFA--HLSSLQIAYYVGATLLIG 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  +TP    + T   +T++  N E+ I+ + G S   +  PVL      +   F+    
Sbjct: 58  LYHLTPAIMLIATVMYITTIGVNNEMKIMLSAGISLKKISLPVLVFVSCAAGAHFLLGEQ 117

Query: 121 IEPKCRSTIKQ-LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           +    +  +      +A+     S +     +  + D          N     +  V+  
Sbjct: 118 VFQHIKPEVDALQKYEARQQRPPSAIIAGNLWVRNYDGTSFARIRRFNMENNLLLGVEIY 177

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +   I    S      ++  I  +G V R + +++ +S +            ++   +
Sbjct: 178 TVREGMIQEYVSADHGSLQEGRIHLEGVVIR-NFMTQQVSRLPEHQVEFTGIMESTKASI 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               + +   L + +             Y SE  +R++  L  ++  L++I         
Sbjct: 237 KPLEEYSSRELAS-DIAILREAGHPSHLYVSELLRRVSYSLAIIVLSLVAIPLGVTGE-- 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLFLFCISSIFLLMIKK 356
           R+  KI  + + L ++   F   S  +        +PY  P +   +F    +FL    +
Sbjct: 294 RKSGKIFSVTVGLLVAMVYFIVDSLAMTLGKGDAISPYIAPFIANGVFLGLFVFLYSRHR 353

Query: 357 K 357
            
Sbjct: 354 N 354


>gi|226951739|ref|ZP_03822203.1| permease YjgP/YjgQ-like protein [Acinetobacter sp. ATCC 27244]
 gi|226837529|gb|EEH69912.1| permease YjgP/YjgQ-like protein [Acinetobacter sp. ATCC 27244]
          Length = 340

 Score = 86.2 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 108/338 (31%), Gaps = 16/338 (4%)

Query: 28  WVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELL 87
              Q+++     +       +LL I  Y +P  L ++ P  F +    V   +  + E+ 
Sbjct: 1   MGGQLIKIFGRAAQGRLDGGVLLSIIAYRLPEFLTLILPLGFFIGLMLVFGRLYVDHEMA 60

Query: 88  IIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEE 147
           +++ +G SR  L + +L +  +  I   +             + L     +   F  +  
Sbjct: 61  VLNGSGVSRNQLTRLLLPMTAVFLIVQAVLMCWGASAGIRGYQSLMQTQAVRAGFDLVRP 120

Query: 148 NLFFRLDDDLYIKISKYNPNNTLQGIFIVD--SRDTQTHKIYYAQSG---SIDLDRQAII 202
             F           S       L+ IF      R+ +  ++  A+      I+ D  +++
Sbjct: 121 KEFISSGSYTIYAGSLSEDRKNLKDIFYYYKSDREDKPDQMILAKEATRVEIENDTASVV 180

Query: 203 -LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYR 261
            L  G  +   P     +  +F+SY L+ E+        +  +      L    ++   R
Sbjct: 181 DLVQGRRYEIYPNQPRYTQAEFQSYRLRLENDKDVNFESEDVEALSMSKLWQKRDDFVVR 240

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
                    E   R+      V+   +++  ++     RQ +    I      +  +   
Sbjct: 241 G--------ELGWRIFGPFVMVVALFLAVALSEVSP--RQGRYYRLIPAIFIFASLIVLM 290

Query: 322 FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
            +      ++         + L    +  L   K+K  
Sbjct: 291 IAIKTRISKEELDIWAYPAVLLIYGIAAALFTRKQKLA 328


>gi|241760314|ref|ZP_04758409.1| permease, YjgP/YjgQ family [Neisseria flavescens SK114]
 gi|319637672|ref|ZP_07992438.1| hypothetical protein HMPREF0604_00061 [Neisseria mucosa C102]
 gi|241319192|gb|EER55670.1| permease, YjgP/YjgQ family [Neisseria flavescens SK114]
 gi|317400827|gb|EFV81482.1| hypothetical protein HMPREF0604_00061 [Neisseria mucosa C102]
          Length = 371

 Score = 86.2 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/365 (12%), Positives = 142/365 (38%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   ++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L      +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S+  +++ + L DG  +  +P   D + + F+  +L   +     
Sbjct: 182 KNGNDNIVFAKEGNFSLTDNKRTLELRDGYRYSGTPGKADYNRVSFQHLSLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+                +++E   R++  +  ++     ++A    
Sbjct: 242 DPVSHRRTIPTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G +++ + +   +  +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLVYQNGLTFLRNAVEDGKIHFWLGLLPMHIIMFVIAVVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|319789792|ref|YP_004151425.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
 gi|317114294|gb|ADU96784.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
          Length = 354

 Score = 86.2 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 105/352 (29%), Gaps = 6/352 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + Y+     + F ++    + +  VI  +   N+VS    S           +P   
Sbjct: 3   KKLDRYVFSEGVKFFFLTLTTFLTLFAVIDFVSHFNMVSKVGAS--GAAAYILGRLPLYG 60

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V P    + T   L+  +  +EL +    G S      P++ L +L S+     +  +
Sbjct: 61  VRVIPIATLIATMVTLSRFSETSELTVARALGISTYRFSAPLVILGVLASVASVAVQETL 120

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLE-ENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            P       +++ KA   +T    +   ++F+     ++   +  P N       +    
Sbjct: 121 LPAGLKRATEIALKAGEEVTNGPQKVPGVWFKDRAGDFVFFWELLPKNKRAERVSIIKVK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             +         +I       +L +  V     +    +  +     L          V 
Sbjct: 181 DFSPTGRIDAEEAIYKGGGRWLLREVFVRDFKELKS--TEKETLPINLGVSVKELLLSVN 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                 L  L                  R E + +L   L PVI  +I I         +
Sbjct: 239 NPEAMGLLELFLTIKRLSKLN-YDTNYLRVELYSKLALGLLPVITAIIGIPFGVYNPRNK 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           +   +    I +   +     F  +       P Y     L LF    +FLL
Sbjct: 298 KGYTVLLAAIIVVSMWITVSLFLSLGKSEVLPPLYAAFAPLLLFGAVGLFLL 349


>gi|315500013|ref|YP_004088816.1| permease yjgp/yjgq family protein [Asticcacaulis excentricus CB 48]
 gi|315418025|gb|ADU14665.1| permease YjgP/YjgQ family protein [Asticcacaulis excentricus CB 48]
          Length = 379

 Score = 86.2 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/358 (12%), Positives = 95/358 (26%), Gaps = 8/358 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPTVL 61
               YI+     +   + + +  I ++I  ++    +      S   ++ +     P ++
Sbjct: 21  RLTTYIITRCLMAIGTALVVVSSIIFLIDYVEISKSLGQRGDLSSLQIVGLLMLKSPNII 80

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ PF F   T +    +NR +EL+ +   G S    + P   +A +L        +  
Sbjct: 81  LVLLPFAFLFGTLSAFVGLNRRSELIAMRAAGMSAWRFVLPAAGMAAILGALTVTVLSPA 140

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
                    + +A+   + T +   E    + D      I     +   + I       +
Sbjct: 141 ATVLADQYDRFAAQQSQSDTRAKTGEIYLRQGDGKQQTVIHAREQSEDGRLIDASFWTFS 200

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVH----RKSPISKDISIMKFKSYTLQTESANSST 237
                       ID      +L  G       R S   +        S         +  
Sbjct: 201 LDEAEIPRFLTRIDASEA--VLRPGTWQLKSARVSKPGETTLYYNTLSIGSNLSPERAFN 258

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   N   L                 Y    ++ L   L       +    + +  
Sbjct: 259 RFAAPQSTNFWQL-PGTIAQIESSGFSAAGYVLRLNQLLATPLMFAAMTALGAAFSLRLM 317

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            +    ++    I L             + K E  P ++           +   L++ 
Sbjct: 318 RIGGLARLTLSGIVLGFMVFFLNQLCGSLGKAEVIPAFLAGWATPFAAFLTAMTLLVY 375


>gi|269140438|ref|YP_003297139.1| putative permease [Edwardsiella tarda EIB202]
 gi|267986099|gb|ACY85928.1| putative permease [Edwardsiella tarda EIB202]
 gi|304560231|gb|ADM42895.1| Predicted permease [Edwardsiella tarda FL6-60]
          Length = 366

 Score = 86.2 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 136/354 (38%), Gaps = 19/354 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +  V +     N++  + G  IP +  
Sbjct: 2   IIIRYLVRETFKSQVAILFILLLIFFCQKMVRILGAVVNGDIPTNLVFSLLGLGIPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA +      ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGRLYTESEITVMHACGLSKAVLVKAAMALAFITGALALVNAFWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L E  F    D  Y+       +     +F+   R + 
Sbjct: 122 PWSSLHSDEVMAEARANPGLASLAEGQFQPSQDGNYVLFVGNVKDKKFHNVFLAQLRPSG 181

Query: 183 --THKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +   +   Q ++L+ G  +  + + +D  I  F  Y+      ++  
Sbjct: 182 SQRPSVVVADSGHLVEMKDGAQKVVLDSGTRYEGTAMLRDFRITDFVDYSAIIGHKSAML 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A+  ++S L +              ++R+EFH RLT     ++  L+         
Sbjct: 242 DPNNADQASMSALWH----------SQEPSFRAEFHWRLTLVFSVIVMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +  ++ ++  +  ++ +    F   S +     ++    P+++++      + L
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSNGGKD-KLDPMIWMWGVNGLYLLL 341


>gi|330874292|gb|EGH08441.1| hypothetical protein Pgy4_05802 [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 328

 Score = 86.2 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 103/320 (32%), Gaps = 26/320 (8%)

Query: 49  LLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAI 108
           +  I G+ +P  L ++ P    +        +   +E+ ++  TG S+  L+   +  A 
Sbjct: 1   MFLIMGFRLPGFLQVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAT 60

Query: 109 LLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNP 166
           L+ + +      + P+  +    L  K      F  L    F   R    +         
Sbjct: 61  LVGLLVAWLSFSLAPQGATQFSLLINKQDAMTEFDTLVPGRFQALRDGTRITYTKELSED 120

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ---------AIILNDGEVHRKSPISKD 217
            + L G+FI + R +         +  +               +IL +G  +  +P + D
Sbjct: 121 RSQLAGVFISEKRMSGDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAAD 180

Query: 218 ISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
             ++K+ +Y         S  +        S L+                  +E   R++
Sbjct: 181 YRVIKYDTYGAMLPKPEISEEITDREAIPTSELI----------GNPAPRSVAELQWRIS 230

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYY 335
             L   I  L++I       +  ++ +   +  ++ +          +   +   + P  
Sbjct: 231 LPLSVFIVTLMAIPL---SRVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLS 287

Query: 336 IPILYLFLFCISSIFLLMIK 355
           + + ++    +S   LL   
Sbjct: 288 LGMWWVHGIYLSIGLLLFYW 307


>gi|256820290|ref|YP_003141569.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea DSM
           7271]
 gi|256581873|gb|ACU93008.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea DSM
           7271]
          Length = 495

 Score = 86.2 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 110/304 (36%), Gaps = 22/304 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI+     +FL +   +V I     I   I+ ++     L I+ K   Y IP +
Sbjct: 1   MKILDRYIITQFLTNFLGALSILVLIFVFHTIFTYIDELAGRGLELWIIFKFLIYFIPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ P    + +     +   N E   +  +G S + +++P++ L  LLS+  F   N 
Sbjct: 61  IPIIMPLAVVIASIMTFGAFAENYEFAAMKASGISLMRVMRPLIILMALLSLGTFFLANN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +  L +          + E +F  + +D+ IK+ K   +N      ++  + 
Sbjct: 121 VIPVAYREVYTLRSNIAKVKPAMAIAEGVFSNIGEDISIKVGKKRGDNDEFLENVLIHKK 180

Query: 181 TQTHKIYYAQSG--------SIDLDRQAIILNDGEVHRKSPISKD-------ISIMKFKS 225
           T         +           + +   +IL DG  +     +          + + FK 
Sbjct: 181 TPDKVNRTVINAKRGELKSSKTNSNFLQLILEDGTYYEDIKTNSYEAQQKEPFAKVYFKK 240

Query: 226 YTLQTESANSSTIVLKAND-------QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
           Y +  + ++ + +              N+  L     +      + +  Y +   +R   
Sbjct: 241 YIINLDLSHLNNVDFNEKTDATTYRMMNVGQLNYAIDSLRTDFKQNITDYGNNMFRRTGF 300

Query: 279 WLFP 282
            + P
Sbjct: 301 SVAP 304



 Score = 41.5 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 255 PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI 314
            ++  YR +L+  +      +    +   +   ++   A   A +R+     P+ I++ +
Sbjct: 361 QSDLEYRYKLMNLHILNLSDKFALTVACFVLFFVA---APLGAFIRKGGIGMPLVIAMIL 417

Query: 315 SFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
               ++   ++ + I +N    P L  ++  +  +
Sbjct: 418 FLAYYFIGMFMKN-IAENNTINPALAPWIPALILL 451


>gi|317046771|ref|YP_004114419.1| permease YjgP/YjgQ family protein [Pantoea sp. At-9b]
 gi|316948388|gb|ADU67863.1| permease YjgP/YjgQ family protein [Pantoea sp. At-9b]
          Length = 396

 Score = 86.2 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 56/371 (15%), Positives = 127/371 (34%), Gaps = 23/371 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 32  IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLTLLGLGVPEMAQ 91

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  +  L+K  + L +L SI   I+   + 
Sbjct: 92  LILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKSAMILMLLTSIVAAINVIWLG 151

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +++  A+     + L    F    D   +   +    NT   +F+   R   
Sbjct: 152 PWSSRYQDEVTQNAKANPGAAALAAGQFQTSSDGNAVLFVEDVRGNTFGNVFLAQLRPKG 211

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + L+ G     + + +D  I  F  Y        +  
Sbjct: 212 NARPSVVLADSGHMEQRPDGSQIVTLDKGTRFEGTAMLRDFRITDFVDYKALIGYKQAVL 271

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A   ++  L                T+ +E + RLT     +I  L+ +  +    
Sbjct: 272 DPNDAEQADMRSLW----------QSNDPTFTAELNWRLTLVFSVLIMALMVVPLSVVNP 321

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLL--- 352
              +   + P  +   I F +         K + +P     +  + +L     + L    
Sbjct: 322 RQGRVLSMLPAMLLYLIFFLLQSSLKSNSAKGKFDPTLWMWVVNFAYLALAVGLNLWDTV 381

Query: 353 ---MIKKKYTK 360
               I+ ++++
Sbjct: 382 PMRRIRARFSR 392


>gi|51474040|ref|YP_067797.1| hypothetical protein RT0862 [Rickettsia typhi str. Wilmington]
 gi|51460352|gb|AAU04315.1| conserved hypothetical protein (possible transmembrane protein)
           [Rickettsia typhi str. Wilmington]
          Length = 360

 Score = 86.2 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 157/363 (43%), Gaps = 11/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++P +
Sbjct: 1   MLLYRKYFIKNILPLLIIVTFSVTSIVWITQILKLLYLF-DKGIKVIDFFNLVVLVLPIL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G + I L  P L++A+ + +F +   + 
Sbjct: 60  LFILLPVITVISVLYIYNNLKVERQLIILQASGVNNIQLALPALYVALTVMLFAYYISST 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K   +  +     S +EE  F ++  ++ + I K    N + GI I D+R+
Sbjct: 120 ILPLSHINLKSRLSFIKNNYISSMIEEKTFNKITKNITVFIDKKLAGNIMNGIIIFDNRN 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANS---- 235
                I +A SG++++     I    +  R+    + +++ + F S  ++ ++ +S    
Sbjct: 180 ADKPSIVFAGSGTLNIHGNNPIFELNKGLRQEYDVNGNLTQLTFDSLMIKLQNDSSLASQ 239

Query: 236 -STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +    +AN+  +S LL P+ +    +        +E H+R+   L+  +   +++    
Sbjct: 240 RTQHNKEANEYYISELLTPSHDLVITKKI---KLIAEAHQRIIWPLYNFVLPCLALAVFL 296

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +    ++   I  +F +L++   V      + +   +N  +I   Y  L    +I L ++
Sbjct: 297 RYPYSKKTTFIPVLFSALTV-LLVTAIHFILQNFASKNLDFIFACYFNLLVALTIGLYLL 355

Query: 355 KKK 357
            +K
Sbjct: 356 VRK 358


>gi|261379717|ref|ZP_05984290.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
 gi|284797387|gb|EFC52734.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
          Length = 371

 Score = 85.8 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 143/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   ++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F    + +  +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S+  +++ + L DG  +  +P   D + + F+  +L   +     
Sbjct: 182 KNGNDNIVFAKEGNFSLTDNKRTLELRDGYRYSGTPGKADYNRVSFQHLSLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+                +++E   R++  +  ++     ++A    
Sbjct: 242 DPVSHRRTIPTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G +++ + +   +  +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLVYQNGLTFLRNAVEDGKIHFWLGLLPMHIIMFVIAVVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|171913020|ref|ZP_02928490.1| permease YjgP/YjgQ family protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 385

 Score = 85.8 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 56/384 (14%), Positives = 123/384 (32%), Gaps = 33/384 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS--TESLNILLKISGYLIP 58
           ++ F+ YI R +  S L   L +  +  +  + + +  +     +  L  + +   Y+IP
Sbjct: 3   LRIFDRYIWRQVSSSTLTGVLVLTGVMVLGNVFKEMERLLGDTASLPLMAVAQFITYVIP 62

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             L    P+        V   M+ + E+  +  TG S   +   V  L+I +S   ++  
Sbjct: 63  YSLIFTIPWALLTAILLVFGRMSADNEMTALRMTGMSMPRICAAVFALSIFMSGVCYLVN 122

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
             + P  ++ IK+L     L       +            I   +   N       I  +
Sbjct: 123 VELAPLAKTKIKRLFYDLALDDPAVLFQPGKVLDRFPGYRIFTQEREGNKLKNVEII-QT 181

Query: 179 RDTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSP--------------ISKDISI 220
              +  +   A+   + +        + L +  V                          
Sbjct: 182 NLGRAERYIRAKRAEVVVTPGVTDFQLHLRNATVETGGGEADAASAGGEVNIMNDLQFLY 241

Query: 221 MKFKSYTLQTESANSSTIVLKANDQNLSFLLNP------NPNNPNYRPELLETYRSEFHK 274
           M   + T         T  + ++ ++ S L +       + +      +L+   R+E   
Sbjct: 242 MGDTAITFPLSKLKEKTERVTSSMKDTSALWSEVNTGISSVDGQPLSEKLISVSRTELSM 301

Query: 275 RLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           R +  L  ++F L+ I          QR++    F    I    +  F   ++ + + P 
Sbjct: 302 RYSFSLAAIVFTLVGIPLGITA----QRRETSIGFALSLIVAVSYMVFVIFVNGLNERPS 357

Query: 335 YIP--ILYLFLFCISSIFLLMIKK 356
             P  ++++       +   M  K
Sbjct: 358 VYPHLLMWIPNLIFIGVGSRMFYK 381


>gi|58040480|ref|YP_192444.1| hypothetical protein GOX2052 [Gluconobacter oxydans 621H]
 gi|58002894|gb|AAW61788.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
          Length = 393

 Score = 85.8 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 132/367 (35%), Gaps = 22/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+L  +   F ++ L ++    + ++L   + ++S+  SL   + +   L+P    
Sbjct: 16  ILDRYLLTQMAPPFAIALLAMLIALLLERLLSLFDYLASAGSSLGTCIALLTDLLPHYFG 75

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +     +  M+ N E+  +     S + + +P + + +LL          I+
Sbjct: 76  IALPAALCIAVFLTIRGMSDNNEIDALQAGRVSLMRISRPFMIVGLLLGAASVFLYGYIQ 135

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL-QGIFIVDSRDT 181
           P  R   +     A+      +L+  +F        +     +   T  + +FI +    
Sbjct: 136 PVARYDYRAGFYFAEHTGWAPHLQAGMFASTSSKAVMTADSVSHAGTRLRRVFIREVNAN 195

Query: 182 QTHKIYYAQSGSIDLDRQAII----LNDGE-----VHRKSPISKDISIMKFKSYTLQTES 232
               I  A++G++ +  +       L +GE          P    ++  +     +   +
Sbjct: 196 GVAHIITARTGALTISEKTRSTRLDLWNGEIVDDPFQATKPHKPTVTHFEHVVRVIDRPN 255

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYR--PELLETYRSEFHKRLTQWLFPVIFGLISI 290
             +S     A+++ L+  L    ++  Y        T R+E   R+ + +       +++
Sbjct: 256 KETSFRSRGADERELT--LFELAHDLRYGLPGIEYRTLRAEMDFRMARAIAIPFIPPLAV 313

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCI 346
             A       +R+K     I++++    F       H +         L ++    LFC+
Sbjct: 314 ALAISA----RRRKSVWGLIAVAVILIGFDQTLMFGHSLASTGRLPIWLAIWVPELLFCV 369

Query: 347 SSIFLLM 353
             +  L+
Sbjct: 370 GCLAALL 376


>gi|256829583|ref|YP_003158311.1| permease YjgP/YjgQ family protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256578759|gb|ACU89895.1| permease YjgP/YjgQ family protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 392

 Score = 85.8 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 129/367 (35%), Gaps = 21/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +  + + +G    +S    + +  + ++LQ  +L      +   L+K+  YL P  L 
Sbjct: 6   LLQRELFKEMGIVASISLGGFLSLILLGRLLQLRDLFMGQGVTFFDLVKLFTYLSPFFLI 65

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+ P    +        M  + EL+ +   G S   L+   L L +L S           
Sbjct: 66  MLIPVSCMLGVFLTFLRMGADRELISLRAGGVSLWPLLPAPLLLCLLCSALTVWISLSGI 125

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSRDT 181
                  +    +     T   ++  +F      L +   + +P +  L  +F++DS  +
Sbjct: 126 SWGMDNFRNTVVELARNKTSVNVQPGVFNTSFPGLTVYARQSDPGSGALLDVFVLDSSRS 185

Query: 182 QTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS- 236
           +T     A  G I+ D    +  + L DG V+R      ++S++ F+SY L  +      
Sbjct: 186 KTRATIVAPLGRIESDSERGQVFVRLEDGHVYR--EQGGELSVISFESYILSLDMTRLLG 243

Query: 237 --TIVLKANDQNLSFLLNPNPNNPNYRP--ELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              +  KA  +     L     +               E HKR +     ++ G      
Sbjct: 244 GFELKDKAPKEMSWDDLRTLKGDGFEDRSVNFQRRVDIELHKRFSLPAACIVLG----FF 299

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-----CIS 347
           A   A   Q  K     I+   +F +++ F      + +     P L L+L        +
Sbjct: 300 ALPLAFFFQGMKRQFGLIACLGTFFLYYVFLSGGMALAEGGIIAPALALWLPNVVFMLAA 359

Query: 348 SIFLLMI 354
            I + ++
Sbjct: 360 GIGMWLV 366


>gi|124006213|ref|ZP_01691048.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
 gi|123988137|gb|EAY27795.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
          Length = 491

 Score = 85.8 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 105/285 (36%), Gaps = 20/285 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  +L+     F+++   +VFI  V Q+LQ ++       S  +  ++  Y    +
Sbjct: 1   MKKIDKLVLQSFFGPFILTLSVLVFIFLVQQLLQYLDEFMGKGLSYLVFAELVFYFSLHI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PMV P    + +     ++  + EL  + ++G S I ++ P+  + +  ++  F   N 
Sbjct: 61  IPMVLPLATLLASLITFGNLGEHHELTAMKSSGISLIRVLTPLFMVVVCFAVVSFWFNNS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I PK       L    +       ++E  F+    +  IK++   P+       I+    
Sbjct: 121 IVPKANLDAYSLLYDIRQTKPALDIKEGAFYGGIPNYSIKVNHKFPDGRTLKDVIIYDHS 180

Query: 181 T--QTHKIYYAQSGSIDLDRQAII----LNDGEVH-------------RKSPISKDISIM 221
                 ++  A SG +    +       L  G  +                      S M
Sbjct: 181 GRRGNKQVILADSGQMYTFDKGNFLAFELFKGVRYHELPTREGARPSEEFLKSKFKHSKM 240

Query: 222 KFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE 266
            F   +   ++ + +        +N++ L N + ++   + + LE
Sbjct: 241 IFSLESFNMDTTDKNLFKSNKIMRNVTEL-NKDIDSLTRKRKDLE 284


>gi|238785038|ref|ZP_04629035.1| Inner membrane protein yjgP [Yersinia bercovieri ATCC 43970]
 gi|238714079|gb|EEQ06094.1| Inner membrane protein yjgP [Yersinia bercovieri ATCC 43970]
          Length = 364

 Score = 85.8 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 124/361 (34%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  + +LI   L LA+  S    ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLILAALILALGTSALAAVNTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+   + + L    F    D                 +F+   R   
Sbjct: 122 PWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVTGKEFNRVFLAQLRPNG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q +ILN G  +  + + +D  I  F  Y           
Sbjct: 182 NQRPSVVVADSGHMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQEVQQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A    +  L   N  +           R+EFH RLT  +  VI  L+         
Sbjct: 242 NSNVAEQMTMKQLWRSNEADA----------RAEFHWRLTLIVSVVIMALL---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   S +      N    P+L+++      + + +I   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSNAG-NGKLDPLLWMWTVNGVYLAIAVILNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|325110017|ref|YP_004271085.1| permease YjgP/YjgQ family protein [Planctomyces brasiliensis DSM
           5305]
 gi|324970285|gb|ADY61063.1| permease YjgP/YjgQ family protein [Planctomyces brasiliensis DSM
           5305]
          Length = 392

 Score = 85.8 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 52/394 (13%), Positives = 124/394 (31%), Gaps = 44/394 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI   + R F M    I  +   + + Q+    S +      +++I  Y++ ++
Sbjct: 1   MKLLQRYITMELFRVFAMVLTGISVLLVFVGVFQQ---ASENGLGAMEVIQILPYVLYSL 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP+  P    +  T V   M  + EL      G + ++LI P L +  +LS+   +  + 
Sbjct: 58  LPITIPATMLLTVTVVYGRMAGDQELTAARAAGINLLSLIWPSLLMGAMLSVLALLLTDQ 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     I++        +    L  +  F   +           + TL    I  + D
Sbjct: 118 VIPWSIQKIQETVLVKMEKIFLDQLRADHQFVESNQGLAITVIDVQDKTLIKPTIRYTPD 177

Query: 181 TQTHKIYYAQSGSIDLD-RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                   A+S  I  + ++            +      + ++ + Y       +     
Sbjct: 178 NGQIFTIQAESARIRFNIQERTAWIKIVGGYINMDDGHGAWIREEEYPFPLPMVDKQPKA 237

Query: 240 LKANDQNLSFLLNPNPNNPNYR-----------------------------------PEL 264
                + +S  L         +                                    + 
Sbjct: 238 RHMAVKEISEELEEITATRRQQESHRVLARSSHLLTGHFEQLAMSSFVELVQQQHVDNQR 297

Query: 265 LETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY 324
           ++   +E+H R         F L+    +  +A   +R+ +   F+       +++    
Sbjct: 298 VDRLSTEYHSRFALAGSCFFFVLVGSPFSIMQA---KRQFLTSFFMVFMPIVFLYYPVVM 354

Query: 325 IIHKIEQNPYYIP--ILYLFLFCISSIFLLMIKK 356
           +     +N    P  ++++       I + ++++
Sbjct: 355 LAMNQSKNGMVPPESVMWIANVATGVIGIYLLRR 388


>gi|240113703|ref|ZP_04728193.1| hypothetical protein NgonM_09082 [Neisseria gonorrhoeae MS11]
 gi|268599771|ref|ZP_06133938.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268583902|gb|EEZ48578.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
          Length = 396

 Score = 85.8 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 141/365 (38%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 27  IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 86

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 87  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVI 146

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L      +Y   +    +  ++ +F+ +  
Sbjct: 147 PWAELRNREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQD 206

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L   +     
Sbjct: 207 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 266

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V      + + L+                +++E   R++  +  ++     ++A    
Sbjct: 267 DPVSHRRTISTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 313

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +       +L+ 
Sbjct: 314 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 373

Query: 355 KKKYT 359
            +   
Sbjct: 374 VRSMP 378


>gi|325971215|ref|YP_004247406.1| permease YjgP/YjgQ family protein [Spirochaeta sp. Buddy]
 gi|324026453|gb|ADY13212.1| permease YjgP/YjgQ family protein [Spirochaeta sp. Buddy]
          Length = 361

 Score = 85.8 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/365 (10%), Positives = 112/365 (30%), Gaps = 9/365 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI+R I     ++ +    +   + +   ++   +   S  ++ K++    P  
Sbjct: 1   MKVIDRYIIRSIASVAFVTLMLCTLMLLSVDLFANLDSYLTRKVSYLMIAKLTLLYTPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +            +  L+ +  N EL+ +  +G S   ++ P+L   + LS F F     
Sbjct: 61  VLFALGPALLFSASFFLSQLQANNELICLMGSGLSYRRIVIPILMFGLALSTFQFGFSEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL--QGIFIVDS 178
           +        +          +            +    +   +Y+       Q + ++  
Sbjct: 121 VHIPLSKEREVQEDSLFGLRSTYDNRNITLRDPEGAYVVHARQYSDREKRLAQVMLVLID 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                     A     + ++    L      +       +   + +   + + +   S  
Sbjct: 181 EKGSLKSRIDAPWAYWEEEKGIWRLEQARNQQVDSSLLVLHQTEEQVLYVDSFTLQPSFF 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETY---RSEFHKRLTQWLFPVIFGLISIVAADK 295
              +ND     L                 Y    ++F KRL   L P++   I+      
Sbjct: 241 RNVSNDIKTMELRTAYHYLQRIAELDPNRYPQLATDFAKRLLDSLNPLVMLFIACAI--- 297

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            +   ++  +    I+      +++    +   + +     P+  + +  I  + + + +
Sbjct: 298 -SYKYKKNVLLFSIITSLGIAVIYYVVQMVTLIMAKQAVIGPLWGMAIPMIVIVCIALAE 356

Query: 356 KKYTK 360
           +   +
Sbjct: 357 RAAIR 361


>gi|118590093|ref|ZP_01547496.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
 gi|118437065|gb|EAV43703.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
          Length = 364

 Score = 85.8 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 13/356 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
           ++  LY      ++ L   LF   + ++  +L+ +         S+  +  IS   +P +
Sbjct: 5   RTLSLYFSGRFLKAILGLFLFAAVLIYLFDVLELVRRGGDREGFSVLRVAMISALRVPLL 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V PF           +++R  EL++   +G S      P + + I+L I      N 
Sbjct: 65  LEQVIPFTVLFGAIAAFVTLSRALELVVARASGISVWQFSLPAILVGIILGILSITVYNP 124

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----LYIKISKYNPNNTLQGIFI 175
                +    +++A    +     L+ +    +  D       +   +     TL     
Sbjct: 125 AAVWFQQKSDEVAAGLFGSEQSFLLQSSNDVWVRQDGLDGESVLLAKQLLEGGTLLRGVT 184

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           + + D         ++    L  Q   L +  V+      +     +  ++     +   
Sbjct: 185 IFTFDKDGTFRERIEADEARLGDQIWYLENAIVYTTEQDPQPYGQYQISTF---LTATEV 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
              +      +   L                 Y  ++   L + L  V   LI+   +  
Sbjct: 242 RESIGSPESISFWNLPR-FIELARNAGLPAYRYNLQYQTLLARPLLLVAMILIAAAVSL- 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             + R       I   +   F ++   + +           P++  +   I  + +
Sbjct: 300 -KVSRFGGLGSMILGGILSGFVLY-VLTELAKDFGGAGIVPPLVAAWAPGIFGVLM 353


>gi|34581065|ref|ZP_00142545.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262450|gb|EAA25954.1| unknown [Rickettsia sibirica 246]
          Length = 338

 Score = 85.8 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 145/341 (42%), Gaps = 11/341 (3%)

Query: 23  IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNR 82
           +  I W+ QIL+ + L       +     +   ++PT+L ++ P    +    +  ++  
Sbjct: 1   MTSIVWITQILKLLYLF-DKGIKVMDFFSLIVLVLPTLLFILLPVIMVITVIYIYNNLKV 59

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
             +L+I+  +G + + L  P L++A+++ +  +   + I P     +K      +     
Sbjct: 60  ERQLIILQTSGVNNVQLALPALYVALIVMLLAYYISSNILPLSHINLKSRLNFIKNNYIS 119

Query: 143 SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAII 202
           S +EE  F ++  D+ + I K +  N + G+ I D+R+     + +A SG++++   + I
Sbjct: 120 SMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNPSVVFAGSGTLNIYDNSPI 179

Query: 203 LNDGEVHRKSPI-SKDISIMKFKSYTLQTESANS-----STIVLKANDQNLSFLLNPNPN 256
               +  R+    + +++ + F S  ++ ++ N      +    +AN+  +S LL P  +
Sbjct: 180 FELNKGIRQEYDVNGNLTQLTFDSLMIKLQNDNPLVSQRTKHNKEANEYYISELLAPPHD 239

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
               +        +E H+R+   L+  +   +++    +    R++    P+  S     
Sbjct: 240 LAITKKI---KLIAEAHQRIIWPLYNFVLPFVALAVFLRYPY-RKKTTFMPVLFSALTVL 295

Query: 317 GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            V      + +   +N  +I   Y  L    +I L +  +K
Sbjct: 296 LVTSIHFILQNFASKNLDFIFACYFNLVIALTIGLYLFVRK 336


>gi|209548670|ref|YP_002280587.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534426|gb|ACI54361.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 362

 Score = 85.8 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 116/353 (32%), Gaps = 10/353 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y  R    +     + +  I++++   +    +S     ++   + ++   +P +L
Sbjct: 5   TLSRYFFRRYMVTMGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGILMTAVRLPLIL 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF        VL  +NR  EL++    G S    + P +  +++L +    + N +
Sbjct: 65  QQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLILGLLTMTALNPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
               +     + +  +           + +         +          G  ++D+   
Sbjct: 125 AAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAHTVQENGTKLIDAVLI 184

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                  +    +  D     L DG     + + +    +  +  ++Q  +      V +
Sbjct: 185 HFDS---SGQVILRQDAATAKLEDGYWQLNNVVERKPGEIPMRKASVQLRTNLKQDFVQE 241

Query: 242 ---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A +    F L+             +   ++F+  L+Q L  V    I+   + K + 
Sbjct: 242 RLTAPETIGFFDLSNRIAAAKSFGISTKALETQFNSLLSQPLLLVAMTFIAATVSLKFSR 301

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             Q +    + +   +S  + +  + ++     +    P +  ++  I ++ L
Sbjct: 302 FNQSR---SVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPMIVALAL 351


>gi|170718034|ref|YP_001785074.1| permease YjgP/YjgQ family protein [Haemophilus somnus 2336]
 gi|168826163|gb|ACA31534.1| permease YjgP/YjgQ family protein [Haemophilus somnus 2336]
          Length = 367

 Score = 85.4 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 115/357 (32%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + RS +     ++ + +  Q+++ +   S      +++  +    +PT+  
Sbjct: 2   ILIRYLTKEVFRSQIAILSILLLLFFSQQLVRVLGSASVGKIPADLVFALLSLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+   L L++L +     +   + 
Sbjct: 62  LIFPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVGVALILSLLTAGLATYNVFYLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDT 181
           P       QL   A+   T   L    F  + + D+ + I++   N              
Sbjct: 122 PWAMQKQIQLIDDAKANPTMGALASGQFVNVGNTDVVLFINEIKNNQIQDIYVFQMENKK 181

Query: 182 QTHKIYYAQS----GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                          ++    Q + L + +    S +  D  I  F  Y    +   +  
Sbjct: 182 NQKPSVTVAETGQLKALPNGDQVLSLENSQRVEGSALLPDFRITHFDQYQAYLDYKTTDK 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +    +L  L+N                ++E H RLT      I  LI++       
Sbjct: 242 DTSETEILSLKELIN----------SKSPAAKAELHWRLTLIFAVPIMALIAVPL---SR 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLM 353
           +  ++ +   I  +L +    F   S +              + L       + +L+
Sbjct: 289 VNPRQGRFAKILPALLLYLIYFLLQSSLKSAGASGKIEAHIFMPLVSIFFLFLAVLL 345


>gi|262277384|ref|ZP_06055177.1| putative permease, YjgP/YjgQ family [alpha proteobacterium HIMB114]
 gi|262224487|gb|EEY74946.1| putative permease, YjgP/YjgQ family [alpha proteobacterium HIMB114]
          Length = 360

 Score = 85.4 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/323 (14%), Positives = 102/323 (31%), Gaps = 5/323 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y      + F++  L +  + W  Q  + + LV+     +++  K    + P +L
Sbjct: 4   NKVYRYFFIEFFKLFILINLSLSLLIWFTQAARLLELVTDYGNPISVYAKYLLLIYPKIL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
                  F +    + +    + EL I   +G S+  + +  +++ I+  I        I
Sbjct: 64  DNTFLLSFIISLFFLYSKFETDNELQIYWLSGISKFKIHQLCIYIGIVSLIINLSFSIFI 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      + +   ++  L  + ++E  F      L + + K N    ++GIFI      
Sbjct: 124 APWSSYQGRMILGNSKFTLINAVVKEKNFNSPLKGLTVYVEKNNKQGNIEGIFIY----- 178

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +  +   A+ G +  D     L       +      ++ +KF++                
Sbjct: 179 EKTRTITAEKGEVLSDENGSYLKLINGTTQEKTGSKVNFLKFQNTIFDFSKYQIKNTTAP 238

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
              +   + L  N +N           R E + R+ +    +I   +             
Sbjct: 239 KYSERNLYWLINNLDNKKISKARKIELREEINSRIIKPFMILILTSLISFLIFTNNENIN 298

Query: 302 RKKIHPIFISLSISFGVFWGFSY 324
            KK        S+   +      
Sbjct: 299 SKKFKFYIYCFSVLGIILNEILV 321


>gi|225075102|ref|ZP_03718301.1| hypothetical protein NEIFLAOT_00101 [Neisseria flavescens
           NRL30031/H210]
 gi|224953586|gb|EEG34795.1| hypothetical protein NEIFLAOT_00101 [Neisseria flavescens
           NRL30031/H210]
          Length = 373

 Score = 85.4 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 145/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   ++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F    + +  +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L +G  +  +P   D + + F++ +L   +     
Sbjct: 182 KNGNDNIIFAKEGNFSLNDNKRTLDLRNGYRYSGTPGRADYNRVSFQNLSLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        S L+                +++E   R++  +  ++     ++A    
Sbjct: 242 DPVSHRRTIPTSQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G +++ + +   +  +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTFLRNAVEDGKIHFWLGLLPMHIIMFVIAVVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|238023199|ref|ZP_04603625.1| hypothetical protein GCWU000324_03126 [Kingella oralis ATCC 51147]
 gi|237865582|gb|EEP66722.1| hypothetical protein GCWU000324_03126 [Kingella oralis ATCC 51147]
          Length = 368

 Score = 85.4 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 137/365 (37%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            +    ++    + +     ++ I    Q +  +   +    +++ +  + G+    + P
Sbjct: 2   IYHRQFIKETTLTAIAIFFVVLAILVFTQGINMLGRAADGRVAVDAVTTLIGFWTLGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ I  ++G      I+PVL  A+ L++ +   +  + 
Sbjct: 62  LLLVLTAYISTLTVLTRYWRDSEMAIWLSSGLGLKKWIRPVLTFALPLAVLVATMQISVL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD---DLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S ++   F  L      +Y   +    N  ++ +FI D  
Sbjct: 122 PWAEYRSREYAEILKQKQNLSLVQAGTFSELGKKDGRVYFVETFDTDNGIMKNLFIRDID 181

Query: 180 DTQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT-ESANSS 236
           +T    + +A+ G  D   +++ ++L +G  +       D   + F+   L    +    
Sbjct: 182 ETGRDSVVFAKEGRFDLSNNKRTLVLTNGYRYSGIAGRGDFDQVSFQELNLIINTTPKVV 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +        + L+                Y++E   R++  +  ++  L++I      
Sbjct: 242 DPIDHRRTIPTAQLI----------GSSNPQYQAELMWRVSLPITVLLLSLLAIPL---S 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + + +++        G + +   +   +  +++ +L + L  I+ I++L+ 
Sbjct: 289 YFNTRSGNSYHVLLAVGFFLVYQNGLTLLRDAVEDGKINFWLGLLPMHLLMIACIWVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 MRSMP 353


>gi|78188415|ref|YP_378753.1| hypothetical protein Cag_0437 [Chlorobium chlorochromatii CaD3]
 gi|78170614|gb|ABB27710.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
          Length = 443

 Score = 85.4 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 101/296 (34%), Gaps = 14/296 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YIL+     F  + + IV +  +               +   ++++       +
Sbjct: 1   MTILDRYILKKQIAPFFFAFITIVALLQLQFFSTFAERFIGKGITFVAIVELLALQSAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +       ++   +E+ +   +G S   ++ PV+ +++LLS  +    N+
Sbjct: 61  VSFALPMAVLVAVVMSFGTLTTTSEMTVCRASGISLYRVMVPVIVVSLLLSFTVERFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
           + P+     K L A+   +     L E  F  L D   + +   +  +  L+G+ I D  
Sbjct: 121 LLPQANYQAKSLMAEIARSKPAFGLTEQAFSTLVDGYSMYVRSSDERHGELRGVVIHDMT 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAII----LNDGEVHRK-SPISKDISIMKFKSYTLQTESAN 234
             +      A  G ++           L +G +H+   P       M F+ Y    ES+ 
Sbjct: 181 RPEYRTTITATRGRVEFTPDYQYLVMTLRNGAIHQLQQPEKSGYRSMNFERYRFVFESSL 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           S       N            +        L     EF +R    L  V   L+++
Sbjct: 241 SGFTPSSGNRM--------RADANELSAGELHAIGLEFRRREAVALLHVQAPLVAL 288



 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 265 LETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY 324
              Y + +HK+ +  L  V+F L+           R+        ISL   F ++W    
Sbjct: 344 YNRYMAAYHKKYSLSLACVVFVLVGAPLGVLA---RRGGFGVGAAISLLF-FVLYWMLMI 399

Query: 325 IIHKIEQNPYYIPILYLF----LFCISSIFL 351
              K+ +     P++ ++    +  +  + L
Sbjct: 400 SGEKMAERGVLDPMIAMWMADGVMALIGVGL 430


>gi|157829182|ref|YP_001495424.1| hypothetical protein A1G_07385 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801663|gb|ABV76916.1| hypothetical protein A1G_07385 [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 338

 Score = 85.4 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/341 (17%), Positives = 148/341 (43%), Gaps = 11/341 (3%)

Query: 23  IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNR 82
           +  I W+ QIL+ + L       +     +   ++PT+L ++ P    +    +  ++  
Sbjct: 1   MTSIVWITQILKLLYLF-DKGIKVMDFFSLIVLVLPTLLFILLPVIMVITVIYIYNNLKV 59

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
             +L+I+  +G + + L  P L++A+++ +  +   + I P     +K      +     
Sbjct: 60  ERQLIILQASGVNNVQLALPALYVALIVMLLAYYISSTILPLSHINLKSRLNFIKNNYIS 119

Query: 143 SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAII 202
           S +EE  F ++  D+ + I K +  N + G+ I D+R+     + +A SG++++   + I
Sbjct: 120 SMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNPSVVFAGSGTLNIYDNSPI 179

Query: 203 LNDGEVHRKSPI-SKDISIMKFKSYTLQTESANS-----STIVLKANDQNLSFLLNPNPN 256
               +  R+    + +++ + F S  ++ ++ N      +    +AN+  +S LL P  +
Sbjct: 180 FELNKGIRQEYDVNGNLTQLTFDSLMIKLQNDNPLVSQRTKHNKEANEYYISELLAPPHD 239

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
               +        +E H+R+   L+  +   +++    +    ++   +  +F +L++  
Sbjct: 240 LAITKKI---KLIAEAHQRIIWPLYNFVLPFVALAVFLRYPYSKKTTFMPVLFSALTVLL 296

Query: 317 GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                F  + +   +N  +I   Y  L    +I L +  +K
Sbjct: 297 VTSIHF-ILQNFASKNLDFIFACYFNLVIALTIGLYLFVRK 336


>gi|296122759|ref|YP_003630537.1| permease YjgP/YjgQ family protein [Planctomyces limnophilus DSM
           3776]
 gi|296015099|gb|ADG68338.1| permease YjgP/YjgQ family protein [Planctomyces limnophilus DSM
           3776]
          Length = 394

 Score = 85.4 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/398 (13%), Positives = 121/398 (30%), Gaps = 44/398 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YIL  + + F +S      +     +                +L+I  ++IPT+
Sbjct: 2   MPLLQRYILVDLLKVFAVSAAGFTLLLVFAGVYVE---AKEHGLGPMQILQILPFIIPTL 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP   P    +    V   ++ + E++     G   I+++ P   L ++LSIF  +  + 
Sbjct: 59  LPFTIPTALLLTVCVVYGRLSGDQEIIAAKAAGIHIISVLWPAFLLGVVLSIFTLVITDQ 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-FRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P     I++  A A   + F  L+        D  L I +            F     
Sbjct: 119 MIPWSMKRIQRTIAMAVEDIFFDVLKAQNQLNLRDQGLSITVMDVRDRTLYMPTFRYMRG 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS-IMKFKSYTLQTESANSSTI 238
           +              DLDR  +++   + +   P   +     ++ +      + +    
Sbjct: 179 NKPVTVQAKEARLRFDLDRDVVVMEFKDGYISLPDDANTRVRFRYDAREFPLPNRSQKAK 238

Query: 239 VLKANDQNL-----------------------SFLLNPNPNNPNYRPELLETYRS----- 270
                 + +                         L + + +    +   +  Y+      
Sbjct: 239 SRDMTSREILAETRAMATGDATATRQLAIEAALILASGDFDRFGEKEFAVSRYQVDEERN 298

Query: 271 -------EFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
                  E H R++       F L+    A   A  +    +            V++  S
Sbjct: 299 RSMKLTTELHNRISMAFGCFFFVLVGAPFAVYMAKNQF---LTSFLFCFVPILVVYYPLS 355

Query: 324 YIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKKYTK 360
            +   + +     P   ++L     ++  L I ++  +
Sbjct: 356 MMAQNLSKVGKVDPSWAVWLPNGALTLGFLYIIRQLAR 393


>gi|311747143|ref|ZP_07720928.1| membrane protein [Algoriphagus sp. PR1]
 gi|126578851|gb|EAZ83015.1| membrane protein [Algoriphagus sp. PR1]
          Length = 604

 Score = 85.4 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 101/269 (37%), Gaps = 8/269 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  IL      FL++ L + FI   + +L+  + +        I +++  Y + ++
Sbjct: 1   MKKLDKLILGSFIGPFLLTFLVVDFILLTVNMLKYFDEIFGKGLDFWIYMELISYFVISI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
            PM  P    + +     ++  + EL  I ++G S I  ++ +    I+LS   ++S N 
Sbjct: 61  SPMALPLAVLLSSLMTFGNLGEHFELTAIKSSGISLIRAMRSIGVFVIVLSFAAYLSNNH 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK       L    ++      ++E +F+       IK++K   +  L+ I I D   
Sbjct: 121 LVPKVNLKTFSLLYDIRMKSPALDIKEGVFYNGIPGYSIKVNKKLDDVRLKDIIIYDHTG 180

Query: 181 TQTHKIYYAQ-----SGSIDLDRQAIILNDGEVHRKSPISKDI--SIMKFKSYTLQTESA 233
            Q +               +     + L +G  + +   S+ I    + F     +  + 
Sbjct: 181 VQGNLNVTLADSGRMETFFNDSYMRLTLYNGINYSEERQSRGIAEKPVNFSRGEFE-TNV 239

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRP 262
              ++     D+    L + N    N   
Sbjct: 240 IVFSLDAFQMDRTPEDLWSTNRAIKNISG 268



 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 8/121 (6%)

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
           +NL    +      +        Y   ++++ TQ    ++  +I    A   A++++   
Sbjct: 463 RNLKNSFDVKKAQIDTDEREYRRYEISWYQKYTQAFACIVMFMIG---APLGAIIKKGGL 519

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIK--KKYTK 360
             P+ IS+ I F V++  +    K  +     P++  +    C+    L  +K  +K  +
Sbjct: 520 GMPVLISI-IFFIVYYMLTMTGEKWAKEGIIDPLIGTWFSNLCLIPFGLFFLKQARKDAR 578

Query: 361 I 361
           +
Sbjct: 579 L 579


>gi|330720162|gb|EGG98555.1| putative Permease [gamma proteobacterium IMCC2047]
          Length = 323

 Score = 85.4 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 101/313 (32%), Gaps = 5/313 (1%)

Query: 41  SSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLI 100
                   +L      +P  + ++TP    + +   L  +  N+EL ++   G S   + 
Sbjct: 11  EGDYGTPEVLMYVLMTVPKRIYVITPLAVLIGSLLGLGMLANNSELTVMRAVGMSVARIS 70

Query: 101 KPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK 160
              +  A+L      +    + P   +  +   A A+         +  ++    D ++ 
Sbjct: 71  WAAIKPALLFVAAALLIGEFVVPHSENYAQSQRALAESRGEAVS-SKYGYWHRGGDTFMH 129

Query: 161 ISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISI 220
            +   P   L G+   +  D +  +  +A+      D    +L   +    S    +   
Sbjct: 130 FNAVLPGGVLYGVTQYEYDDKKLTRSLFAEKAIFQGD--HWVLKQIKHSYLSDTQVEAGE 187

Query: 221 MKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL 280
                +  +        +V+   D ++  L +   N    +    + Y   F K++ Q  
Sbjct: 188 DLTLRWDTELTPEVLKVVVVDPADLSIMGL-HTYTNYLKEQELDAKRYLLAFWKKVLQPF 246

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI-EQNPYYIPIL 339
             V+  L+++                   I L + F     F      +    P +  I+
Sbjct: 247 AIVVMVLVALSCIFGPLRSVTMGYRVFAGIILGVVFRYIEDFLGPASIVFGFEPVFASIM 306

Query: 340 YLFLFCISSIFLL 352
            + +F I++  LL
Sbjct: 307 PIAIFAIAAAVLL 319


>gi|182413838|ref|YP_001818904.1| permease YjgP/YjgQ family protein [Opitutus terrae PB90-1]
 gi|177841052|gb|ACB75304.1| permease YjgP/YjgQ family protein [Opitutus terrae PB90-1]
          Length = 369

 Score = 85.1 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/369 (10%), Positives = 95/369 (25%), Gaps = 13/369 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  ++ ++LR       +     V +  V  +      +         L       +P  
Sbjct: 1   MNLYDRHLLREWLAILGLVLCATVGLLLVQVLYDDFRDLRELGARGLDLWMYLFVTVPMY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P    +    VL  ++R  E   +   G S + +  PV  + +      +     
Sbjct: 61  LALVLPLALLVSLMFVLGKLHRANEFTALRAAGVSLLRITAPVWIVGMFACGLSWWLNTT 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEEN---------LFFRLDDDLYIKISKYNPNNTLQ 171
           + P        L    +     + +  +               D ++             
Sbjct: 121 VVPWSVDESAALRDTMRFRKESNLMPPDRVSAVYSVGFDNPRADRMWFFNRYSKWTQKAY 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS----IMKFKSYT 227
           G+ +    + +          +     +     +G      P + ++       +     
Sbjct: 181 GVTVSIMDEHRRELQRIVAEQAWFEAERGWTFRNGRELTFRPDTGELESTVPFTERVEAQ 240

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
            + +      I  K  D +L  L                 Y   +   +   L P+I   
Sbjct: 241 FREDPKLMLLIDRKPTDLSLPQLRRLIDYYAIEENPKGTPYAVRYFGLVADTLAPLIVIA 300

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
           I+I  A     V     +        + +      S +  K   +P     +      + 
Sbjct: 301 IAIPFAVTGVRVNAAIGVSKSIGLFMLYYIFSNIASALAAKQLVDPMTAAWVPNIGMALV 360

Query: 348 SIFLLMIKK 356
           + +  +  +
Sbjct: 361 AGWFFVRLR 369


>gi|292493019|ref|YP_003528458.1| permease YjgP/YjgQ family protein [Nitrosococcus halophilus Nc4]
 gi|291581614|gb|ADE16071.1| permease YjgP/YjgQ family protein [Nitrosococcus halophilus Nc4]
          Length = 374

 Score = 85.1 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/348 (12%), Positives = 118/348 (33%), Gaps = 20/348 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YIL+ +  +     L ++ I   I+ ++ +   +        +L +S Y     L
Sbjct: 8   RIVDRYILKELSLNVTAITLVLLLIFGGIRFIRFLGQATEGKVPGETILALSTYEAIGAL 67

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P    +    VL  M  ++E++++   G SR  L++ VL   ++L+I +      +
Sbjct: 68  VLLLPLAAFLAVILVLGRMANDSEIVVLFACGISRGHLLRVVLAFGLVLAIGVGCISLYL 127

Query: 122 EPKCRST-IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            P   +   +        A T   +  N                  +        +  R+
Sbjct: 128 GPLASAEGYRLKQEAILAAETSGLVAGNFKKTKGGQWVFYAESLTEDRLGMRNVFIQVRE 187

Query: 181 TQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                ++ +  G +  D     + +IL +G  +        I I +F+ + +  +   + 
Sbjct: 188 PTQKILFRSSRGRLQTDGITGDKHLILEEGYRYDLVGNDVGIRISRFERHGILVKKGGAQ 247

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              ++        L                   +E   R++  +  ++  ++++  A   
Sbjct: 248 EFRIRHKTLPTLTLWEM----------GAPKDIAEVQWRVSMPIATLLLVMLAVPLA--- 294

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLF 342
            L  ++ +   +  ++ +            + +  E  P  + + ++ 
Sbjct: 295 RLEPRQGRYAGLVPAVLVYVIYSNMLGISRNWVEHEVIPASLGLWWVH 342


>gi|193214339|ref|YP_001995538.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193087816|gb|ACF13091.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 455

 Score = 85.1 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 97/232 (41%), Gaps = 6/232 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YIL+     F+     +VF+  +  + + ++        +N+++++    I  +
Sbjct: 1   MTILTRYILKSHIGPFVFGFATVVFVFLMQFLARYLDRFVGKGLEMNVIIELIVLQIAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +  P    + T     +M  ++E+  I  +G S + ++ P++    +L+  +    NI
Sbjct: 61  AVLAAPMAVLISTLMTFGNMVNSSEMTAIRASGISLLRIMIPIIVAGAILTYLMERFNNI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           + P+     K L      A     LEEN+F  +     I   K +   + + G+ I D+R
Sbjct: 121 VLPEANHQAKVLLMDISRAKPSFGLEENVFSDMIRGYTILARKTDEKSSNIAGVTIYDNR 180

Query: 180 DTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRK-SPISKDISIMKFKSY 226
           ++  + +  A SG  +         + L  GE+H   +P +     + F+++
Sbjct: 181 NSTRNVVITADSGFFEFTSDLRNMIMTLKHGEMHELVNPENHSYRRVNFETH 232



 Score = 51.9 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 6/98 (6%)

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
           N    L+  Y  E HK+       + F  + +         R+        +SL I F +
Sbjct: 350 NSNTRLINKYLVEVHKKYAIPFACLFFVFVGVPLGVLA---RRGGFGIGAGLSL-IFFLL 405

Query: 319 FWGFSYIIHKIEQNPYYIPILYLF--LFCISSIFLLMI 354
           +W F     K+       P + ++     IS I  +++
Sbjct: 406 YWVFLIGGEKLADRDIVSPAIAMWMGNVVISVIGAVLL 443


>gi|188583149|ref|YP_001926594.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
 gi|179346647|gb|ACB82059.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
          Length = 362

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/349 (12%), Positives = 98/349 (28%), Gaps = 11/349 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   Y      R+ L   L +  + + +  ++ +     S   S  ++ +++ Y  P V 
Sbjct: 6   TLGRYFAWRFVRTILGVFLTVFALVYTLDFVELLRRAGDSEGASTGLMAQLALYRTPAVA 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V PF     +   L  ++R  EL++    G S    ++P  F+A+ +      + N +
Sbjct: 66  ESVLPFAVLFGSMAALLQLSRKLELVVARAAGISAWQFLQPGAFVALAIGALAIGAYNPL 125

Query: 122 EPKCRSTIKQLSAKA---QLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
               +    ++ AK                    +D    I+        T      V  
Sbjct: 126 SAALKQRSSEIEAKIFAKSTKAGTGKDLWLRQRSVDGQAIIRAETAVEGTTTLAGVTVFQ 185

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            D         ++    L      L D  V  +    +     +        + +     
Sbjct: 186 FDDAGVFTAQIEAARATLHDGWWELRDVRVLTRD---EPPESHEVYLVASTLDPSQIRQR 242

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L      +          YR ++   L   L  +   L++   +     
Sbjct: 243 FTPPESVPFWQLPETIARHERA-GLDATRYRLQYDVLLATPLLYLAMVLVAATVSL--RF 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
            R       +   +S  F ++     +   +  +    P +  +   + 
Sbjct: 300 FRFGGVGKLVLGGVSAGFVLYVARQVMEG-LGASGMVAPTVAAWFPAVV 347


>gi|28198044|ref|NP_778358.1| hypothetical protein PD0108 [Xylella fastidiosa Temecula1]
 gi|182680671|ref|YP_001828831.1| permease YjgP/YjgQ family protein [Xylella fastidiosa M23]
 gi|28056104|gb|AAO28007.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
 gi|182630781|gb|ACB91557.1| permease YjgP/YjgQ family protein [Xylella fastidiosa M23]
 gi|307579132|gb|ADN63101.1| permease YjgP/YjgQ family protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 368

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/368 (11%), Positives = 116/368 (31%), Gaps = 13/368 (3%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK F    + Y+ R +  + L++ L ++ +  V      +  +   + S    +    Y 
Sbjct: 1   MKLFPCLHDRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGKGSYSFGHAIAYIAYT 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P     + P    +     L  +   +EL  +   G SR  L   V+ +  + +  + +
Sbjct: 61  VPRRAYTLFPTAAVIGMLLGLGQLAATSELTALRALGVSRTRLSLSVMMMIGMGTGLMVL 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI- 175
           +   + P  ++    L A A+     +    + F+  + ++++            G  + 
Sbjct: 121 TGETLGPWAQAQADILKASAKYKSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIML 180

Query: 176 ------VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
                 +             ++  ++  +   IL   +    S             +  +
Sbjct: 181 ILHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFDSLPWRSR 240

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
            + A  +  + K  + +   L+  +             +  ++  R    +  +   L +
Sbjct: 241 LDPAVLAAGLAKPRNLSAHELVQ-SIEYRRRNHLDARDFEGQYWSRWFYPVNVLALCLAA 299

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           I  +          K   + I  ++SF +   F   I  + +   Y     L    +   
Sbjct: 300 IPFSFGLLRSGGMGKRTFLGILFALSFWMLQMFFERIASVLK-LNYQIFYLLPPMVMLCG 358

Query: 350 FLLMIKKK 357
              + +++
Sbjct: 359 SYWLFRRQ 366


>gi|113460662|ref|YP_718728.1| permease [Haemophilus somnus 129PT]
 gi|112822705|gb|ABI24794.1| conserved permease [Haemophilus somnus 129PT]
          Length = 367

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 114/357 (31%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + RS +     ++ + +  Q+++ +   S      +++  +    +PT+  
Sbjct: 2   ILIRYLTKEVFRSQIAILSILLLLFFSQQLVRVLGSASVGKIPADLVFALLSLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+   L L++L +     +   + 
Sbjct: 62  LIFPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVGVALILSLLTAGLATYNVFYLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDT 181
           P       QL   A+   T   L    F  + + D+ + I++   N              
Sbjct: 122 PWAMQKQIQLIDDAKANPTMGALASGQFVNVGNTDVVLFINEIKNNQIQDIYVFQMENKK 181

Query: 182 QTHKIYYAQS----GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                           +    Q + L + +    S +  D  I  F  Y    +   +  
Sbjct: 182 NQKPSVTVAETGQLKVLPNGDQVLSLENSQRVEGSALLPDFRITHFDQYQAYLDYKTTDK 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +    +L  L+N                ++E H RLT      I  LI++       
Sbjct: 242 DTSETEILSLKELIN----------SKSPAAKAELHWRLTLIFAVPIMALIAVPL---SR 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLM 353
           +  ++ +   I  +L +    F   S +              + L       + +L+
Sbjct: 289 VNPRQGRFAKILPALLLYLIYFLLQSSLKSAGASGKIEAHIFMPLVSIFFLFLAVLL 345


>gi|186476978|ref|YP_001858448.1| permease YjgP/YjgQ family protein [Burkholderia phymatum STM815]
 gi|184193437|gb|ACC71402.1| permease YjgP/YjgQ family protein [Burkholderia phymatum STM815]
          Length = 382

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/375 (12%), Positives = 111/375 (29%), Gaps = 25/375 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R +  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRIYEKYFARQVYLTFVFILFAFSGLFFFFDLINELNSVGHGNYKFQYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L    ++   +
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVFLTYLIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL---------DDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  +   S  E  ++ +              ++ + +  P+ T+ 
Sbjct: 121 VGPYTDQLSERVRLEALGSSVSSNFESGVWVKDTLTARADGEQVTRFVNVGQLQPDATIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-----------SPISKDISI 220
            + I +                        +L D    +              ++     
Sbjct: 181 NVRIYEFDSKFRLSNVRIAKSGKYQPPGHWLLTDVTDTQLIDVAQDASKPADALNPVYRA 240

Query: 221 MKFKSYTLQTE---SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
            +            +    +++L A ++   F L     +     +  + Y     ++L 
Sbjct: 241 KQAALPEYSLRSELTPQILSVLLVAPERMSMFNLFRYIQHLTENHQDTQRYEIALWRKLL 300

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
                 +  ++S+  A                I L +SF +F       H    N +  P
Sbjct: 301 YPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLF--SHIGNLNTWPAP 358

Query: 338 ILYLFLFCISSIFLL 352
           +       I  +  L
Sbjct: 359 LTAATPALIYLVLGL 373


>gi|319793490|ref|YP_004155130.1| permease yjgp/yjgq family protein [Variovorax paradoxus EPS]
 gi|315595953|gb|ADU37019.1| permease YjgP/YjgQ family protein [Variovorax paradoxus EPS]
          Length = 369

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/370 (12%), Positives = 121/370 (32%), Gaps = 15/370 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST---ESLNILLKISGYLI 57
           MK+    I     ++     L  + + +    +  +  V             L     L+
Sbjct: 1   MKTIRRLIYVEALKAVAFVTLGFLCLFFFFDFVDELQSVGKPESLAYGPMQALIYVTLLV 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P+ L  + P    +    V+  + +++E  I+  +G      ++ +L L +   I  F  
Sbjct: 61  PSHLYELLPITVLIGCIFVMARLAQSSEYTILRTSGLGPWRALRTLLLLGVGFVILTFAI 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS---KYNPNNTLQGIF 174
            + I P    T + L ++ Q   +             D++   ++        +      
Sbjct: 121 GDYIAPLSERTGQLLKSRYQGTYSLVGNTGAWLKEKRDNVSYAVNVLSISRDGSLKNARI 180

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK----SPISKDISIMKFKSYTLQT 230
                +    K    +S  I     A+   + + +             + +    +    
Sbjct: 181 FEFDANGYVSKQLVVKSARILDGHWALADIEKQDYDTRSAADKARIVTTEIPQMDWPTSL 240

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            +   S  +L+ +  +   L +    + +   +  + Y  EF +++   L  ++  ++++
Sbjct: 241 TAEMVSVALLRPDRMSTIDLFD-YIRHLDANGQTAQRYEIEFWRKVFYPLSCLVMVVLAL 299

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYY---IPILYLFLFCI 346
             A                + + ISF +    F Y+ +    +P+     P L   +  +
Sbjct: 300 PFAYLHFRQAGITTYVFGGVMIGISFFLLNNVFGYLGNLSNWSPWLTAAAPGLIYSVMSL 359

Query: 347 SSIFLLMIKK 356
           ++   L++++
Sbjct: 360 TAFSWLVLRR 369


>gi|239815706|ref|YP_002944616.1| permease YjgP/YjgQ family protein [Variovorax paradoxus S110]
 gi|239802283|gb|ACS19350.1| permease YjgP/YjgQ family protein [Variovorax paradoxus S110]
          Length = 369

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/369 (13%), Positives = 124/369 (33%), Gaps = 13/369 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST---ESLNILLKISGYLI 57
           MK+    I     ++     L  + + +    +  +  +             L     LI
Sbjct: 1   MKTIRRLIYVEALKAVAFVTLGFLSLFFFFDFVDELQSIGRPESLAYGPAQALIYVTLLI 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P+ L  + P    +    V+  + +++E  I+  +G      ++ +L L +      F  
Sbjct: 61  PSHLYELLPITVLIGCIFVMARLAQSSEYTILRTSGLGPWRALRTLLLLGVGFVFLTFAI 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT---LQGIF 174
            + I P    T + L ++ Q + +             +++   ++  +            
Sbjct: 121 GDYIAPASERTGQLLKSRYQGSYSLVGNTGAWLKEKRENVSYAVNVLSIARDGSLKNARI 180

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                +    K   A S  I  D   +   + + +     ++   I+  K   L   +  
Sbjct: 181 FEFDANGYVRKQLVASSARIFDDHWQLSDVELQDYETRISAEKARIVTTKVPQLDWPTTL 240

Query: 235 SSTIVLKA---NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           +S +V  A    D+  +  L     +     +  + Y  +F +++   L  ++  ++++ 
Sbjct: 241 TSEMVSVALLRPDRMGTLDLFDYIRHLEANGQTAQRYEIQFWRKVFYPLSCLVMVVLALP 300

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYY---IPILYLFLFCIS 347
            A                + + ISF +    F Y+ +    +P+     P L   +  ++
Sbjct: 301 FAYLHFRQAGITTYVFGGVMIGISFFLLNNVFGYLGNLSNWSPWLTAAAPGLIYSVMSLA 360

Query: 348 SIFLLMIKK 356
           +   L++++
Sbjct: 361 AFSWLVLRR 369


>gi|268683689|ref|ZP_06150551.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268623973|gb|EEZ56373.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
          Length = 384

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 141/365 (38%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 15  IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 74

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 75  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVI 134

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L      +Y   +    +  ++ +F+ +  
Sbjct: 135 PWAELRNREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQD 194

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L   +     
Sbjct: 195 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 254

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V      + + L+                +++E   R++  +  ++     ++A    
Sbjct: 255 DPVSHRRTISTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 301

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +       +L+ 
Sbjct: 302 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 361

Query: 355 KKKYT 359
            +   
Sbjct: 362 VRSMP 366


>gi|254445062|ref|ZP_05058538.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
           DG1235]
 gi|198259370|gb|EDY83678.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
           DG1235]
          Length = 388

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/383 (14%), Positives = 111/383 (28%), Gaps = 31/383 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPT 59
           M     YIL+ +  S + S     F+   + ++   +NL++    ++    +++  L P 
Sbjct: 1   MTLIHRYILKNVFVSCMASVAMFAFLILTMSLVKDMLNLLAEGQLTVGAFFRLTKLLFPF 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V     P  F       +  ++   E+  +   G S I L   V  LAIL +    +   
Sbjct: 61  VFVYALPMGFITGALLTMGRLSAENEITSLRAAGVSVIRLSSSVFLLAILGTTASLVVNF 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
              P  ++  +Q            ++ E  F +      I + K              + 
Sbjct: 121 YYGPLAKTEYRQELKNTIQTNPLGFIVEKTFVKDFTGSVIYVGKKEAEMLYDVWIWKLNS 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN----- 234
           ++Q      A+ G       +  L                   F++      SA      
Sbjct: 181 ESQVTTFARAEKGRFAFLENSAELQLDAEGVTIEYRDAEDPENFRTRNFYPASAAKFPFS 240

Query: 235 --------SSTIVLKANDQNLSFLLNPNPNNP-----------NYRPELLETYRSEFHKR 275
                     T+  K        L                       + L   +  FHK 
Sbjct: 241 FSLEKILGKETLARKLTWMTFDELQGEIRKYEGIAATATGAVREEALDNLLKAKMVFHKN 300

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
                  + F  I+I    K +   +++    + I + +   +++     I  +E  P  
Sbjct: 301 FAMGFAVLSFACIAIPLGLKTS---RKETSANLGIGVGMG-LLYYLAMISIEWLEGRPDL 356

Query: 336 IP--ILYLFLFCISSIFLLMIKK 356
            P  + ++      S    +  +
Sbjct: 357 RPELLFWIPNLAYQSFGAWLFIR 379


>gi|239815707|ref|YP_002944617.1| permease YjgP/YjgQ family protein [Variovorax paradoxus S110]
 gi|239802284|gb|ACS19351.1| permease YjgP/YjgQ family protein [Variovorax paradoxus S110]
          Length = 379

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/351 (14%), Positives = 128/351 (36%), Gaps = 14/351 (3%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           + + + RSF  + + +V I   + +++ + L S  + + + +  +  Y +   +P +   
Sbjct: 7   LRKELSRSFGATLVVLVTIVMTMMLIRTLGLASKGSVNPSEVFLVMAYTVLGYMPTILSL 66

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +     L+ M R++E++I  ++G      ++P+   A  + + + +   +  P   S
Sbjct: 67  SLFIAIVGTLSRMYRDSEMVIWFSSGRGLADFVEPLFRFAWPVLVLIAVMALLGWPWANS 126

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
               + A+ +       +    F      +    I K  P+        + + +      
Sbjct: 127 QTIGMRAQYEGRSDIERVTPGEFRESSGRMRVFFIDKDTPDGATATNVFIWAVERGLQIT 186

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPI---SKDISIMKFKSYTLQTESANSSTIVLKAN 243
             A+SG I+       L      R       +  + I +F++Y  +    +  +      
Sbjct: 187 TSARSGRIENVGNNRFLMLSNGQRLERPLLPTAGLKISEFETYGTRAGGTSDFSADNTPA 246

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADKRALVRQR 302
               +  L   P + ++          E   R+   L  + F L+++ V++    + R  
Sbjct: 247 RAKPTLQLLREPGDASHG---------ELAWRIGMLLAAINFVLLALTVSSVNPRVGRSG 297

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             +  +F  +     +  G S+I         ++ +L+  +  I   +LL+
Sbjct: 298 NLLFALFAFVVYYNMLNLGQSWISSGRFSMGSFMLLLHGGVLLIGVAWLLL 348


>gi|114797396|ref|YP_760970.1| YjgP/YjgQ permease [Hyphomonas neptunium ATCC 15444]
 gi|114737570|gb|ABI75695.1| putative permease, YjgP/YjgQ family [Hyphomonas neptunium ATCC
           15444]
          Length = 373

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/370 (13%), Positives = 114/370 (30%), Gaps = 18/370 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
              + YILR      ++    ++    +I +++++  +      +L   L++S   +P +
Sbjct: 5   SRIQRYILRECLSGLVLVLGILLLAILMIDVVEQMRTIGGDVEITLLDALRLSLMKLPMI 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF     T    T +NR +EL II  +G S    + PV+ L + L IF  ++ N 
Sbjct: 65  IEQTLPFALLAATMMAFTRLNRRSELSIIRASGLSAWRFLTPVIVLGVALGIFSSLALNP 124

Query: 121 IEPKCRSTIKQLS-------AKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
           +  +   + +           +                     ++ +  +      L   
Sbjct: 125 LAARLSQSFEAERARLLDVGREVVQVAETGVWLRQGDDSSQYVIHARRVEDGGRTLLDVK 184

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL----Q 229
            I + R     +     +    +D +  +LN+G    ++ +    +    +  TL     
Sbjct: 185 IIEEQRLYNGRQPTNDFAFVRRIDAEKAVLNEGFWQLENLVENLPNQAPERRATLAIPTS 244

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
            ++          N      L                 Y           +      LI 
Sbjct: 245 LDAVRLLDEYASPNTVGFWELPR-FIFETRAAGLDTSRYTMRLFTLTATPVLFTAMALIG 303

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCIS 347
            +A     L R       +   +  + G+++ F+     +        ++  +     + 
Sbjct: 304 ALACL--RLQRLGGTSRLLATGVLAAIGLYF-FTQFSSSLGSTGAAPAVVAAWSPPLFVL 360

Query: 348 SIFLLMIKKK 357
            + L  I  +
Sbjct: 361 FVSLAFIAYR 370


>gi|78186598|ref|YP_374641.1| hypothetical protein Plut_0723 [Chlorobium luteolum DSM 273]
 gi|78166500|gb|ABB23598.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
          Length = 442

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/330 (15%), Positives = 114/330 (34%), Gaps = 23/330 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+ +   F ++ L I+F+  +       +           L+++       +
Sbjct: 1   MKIIDRYILKSLVGPFFLAFLTIMFVLILQFFANFADRFIGRGIDFMSLIELLALQSAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +       S+   +E+ +   +G S   L+ PV+ +  LLS+ +    N+
Sbjct: 61  VGLAAPMAVLIGVVMAFGSLTTTSEMTVFRASGLSLYRLMLPVVIVGFLLSLLVERFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
           ++P+ +   + L +    A     + EN F  L D   I +   +    ++  I I D+ 
Sbjct: 121 VQPQVKYKARSLMSDIAKAKPTFGITENAFSPLVDGYSILVQHADEKTGSIGDIIIYDAT 180

Query: 180 DTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISK--------DISIMKFKSYT 227
                 +  A+ G ID         ++L+DG++H               D     F+S  
Sbjct: 181 RKDYRSVITAKDGVIDFSADGRYLVMMLSDGQIHEVQVPGHRLYRKMEFDRHRFVFESTG 240

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV--IF 285
                ++ +      ++ +   LL+                     ++++  +       
Sbjct: 241 FGFSRSSENRARSGGHELSARELLSVAEEYRQQ--------VEVAERKISMPIDMFEQAI 292

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSIS 315
            L++   A     VR    +  +       
Sbjct: 293 SLVAPSNAVNYPEVRGGSNVRAVTAVAGYI 322



 Score = 53.5 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 4/87 (4%)

Query: 265 LETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY 324
              Y +E+HK+        +F LI           R+        +SL   F ++W    
Sbjct: 343 YNRYMAEYHKKYALAFACFVFVLIGAPLGVLA---RRGGFGIGAVLSLLF-FVLYWVLMI 398

Query: 325 IIHKIEQNPYYIPILYLFLFCISSIFL 351
               + +     P + +++  +    +
Sbjct: 399 TGENMAEWGVLPPAVAIWMADVVIAVI 425


>gi|330818020|ref|YP_004361725.1| hypothetical protein bgla_1g31620 [Burkholderia gladioli BSR3]
 gi|327370413|gb|AEA61769.1| hypothetical protein bgla_1g31620 [Burkholderia gladioli BSR3]
          Length = 382

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/377 (13%), Positives = 116/377 (30%), Gaps = 26/377 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V   + +    +   G   P+ 
Sbjct: 1   MRLYEKYFARQIYLTFVFVLFAFSGLFFFFDLISELNSVGHGSYNFGYAVLRVGLQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVATLISAIYVFAQMAANSEFTIFRVSGLATNRALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           I P      +++  +A  +   S  +  ++                ++ +   +P++T+ 
Sbjct: 121 IGPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI---------------SK 216
            + I +       +                +L D    + SPI                 
Sbjct: 181 NVRIYEFDSKFQLQNVRIAKSGRYAPPGHWLLTDVTDTQLSPIVPAPNTPKDALNPVYRS 240

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
           +   M   S          S +++     ++  L      +     +  + Y     ++L
Sbjct: 241 EQVSMPQYSLRSDLTPQILSVLLVSPERMSIFNLFR-YIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-Y 335
                  +  ++S+  A                I L +SF +F      I  +   P   
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPL 359

Query: 336 IPILYLFLFCISSIFLL 352
              L   ++    +F L
Sbjct: 360 TAALPGLIYLALGLFGL 376


>gi|118602490|ref|YP_903705.1| permease YjgP/YjgQ family protein [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|118567429|gb|ABL02234.1| permease YjgP/YjgQ family protein [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 371

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/366 (13%), Positives = 131/366 (35%), Gaps = 27/366 (7%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y++R +     +  + I  + +  Q++  I   S     +  LL + G  +   +
Sbjct: 16  SILARYLMRNVSVLLSVVFIVISLVVFGNQLVLIIKETSKEGIPIADLLPLVGLNMIRDV 75

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++      +     ++ + + +E +++++ G      +  +  L I++ IF+FI   ++
Sbjct: 76  VLILSLSLLLAIILSVSKLYKASEAIVMNSLGLGDKHFMVFIQPLVIVIVIFIFILTTVV 135

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY----NPNNTLQGIFIVD 177
            P  +     +  +++    FS++++N F    ++  +  +      +         I  
Sbjct: 136 VPWSKQQRGLIMERSENTPEFSFIKKNEFQEFKNNDIVFYASKVSDADNAKEQNMEEIFI 195

Query: 178 SRDTQTHKIYYAQSGS-----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT-- 230
                   +      +      + +   + L +G  +   P +K+  I+ FK Y LQ   
Sbjct: 196 YTLVNNEPVITLAKQAQKYTNFNTNSVYLRLKNGTRYHGFPSNKNKKILNFKLYDLQIID 255

Query: 231 -ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
            +   S + V K   ++   LL  N               +EF  R++Q L  +I  ++ 
Sbjct: 256 GKMQKSISTVTKVESKSTFELLFSNKLTE----------IAEFQWRISQPLSILILSVLG 305

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCIS 347
           +          +  K   + + + +              +   ++   + + ++ L  + 
Sbjct: 306 V---LLGKTSPRSGKNLGVLVGVVMFIVYNNVLLIAKSTLERGESSPIVGLWWVHLVMLL 362

Query: 348 SIFLLM 353
            IF+  
Sbjct: 363 LIFIFY 368


>gi|238028371|ref|YP_002912602.1| hypothetical protein bglu_1g28320 [Burkholderia glumae BGR1]
 gi|237877565|gb|ACR29898.1| Hypothetical protein bglu_1g28320 [Burkholderia glumae BGR1]
          Length = 382

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/377 (13%), Positives = 114/377 (30%), Gaps = 26/377 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V     +    +       P+ 
Sbjct: 1   MRLYEKYFARQIYLTFIFVLFAFSGLFFFFDLISELNSVGHGAYNFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVATLISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           I P      +++  +A  +   S     ++                ++ +   +P++T+ 
Sbjct: 121 IGPYTDQLSERVRLEALGSSVSSNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS------------ 219
            + I +       +                +L D    + +PI  D              
Sbjct: 181 NVRIYEFDSKFQLQNVRIAKSGRYAPPGHWLLTDVTDTQLTPIPPDSHAPKDALNPVYRS 240

Query: 220 ---IMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
               M   S          S +++     ++  L      +     +  +TY     ++L
Sbjct: 241 EQVSMPQYSLRSDLTPQILSVLLVSPERMSIFNLFR-YIQHLRENQQDTQTYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-Y 335
                  +  ++S+  A                I L +SF +F      I  +   P   
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPL 359

Query: 336 IPILYLFLFCISSIFLL 352
              L   ++    +F L
Sbjct: 360 TAALPALIYLALGLFAL 376


>gi|293393093|ref|ZP_06637408.1| inner membrane protein YjgP [Serratia odorifera DSM 4582]
 gi|291424239|gb|EFE97453.1| inner membrane protein YjgP [Serratia odorifera DSM 4582]
          Length = 393

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 132/356 (37%), Gaps = 19/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +   +++ +          N++L +    +P +  
Sbjct: 31  IIIRYLVRETLKSQIAILFILLLIFFCQNLVRVLGDAVDGDVPTNLVLSLLALGVPKMAQ 90

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  + TLI   + LA+L S+    +   I 
Sbjct: 91  LILPLSLFLGLLMTLGRLYTESEITVMHACGLGKRTLIIAAMVLALLTSLVAAANVFWIG 150

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   S   ++ A+A+   + + L E  F    D   +        NT   +F+   R   
Sbjct: 151 PWASSHQDEVIAEAKANPSIAGLAEGQFQPSQDGNAVLFVGNVKGNTFNNVFLAQLRPNG 210

Query: 183 THK--IYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +  +  A+ G I+  +   Q + L+ G     + + +D  I  F  Y         + 
Sbjct: 211 NQRPSVVVAEHGQINQMKDGSQVVTLDKGTRFEGTALLRDFRITDFSDYKAVVGHRAVAM 270

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A   ++  L   +              R+EFH RLT     V   L++++      
Sbjct: 271 DNTQAEQMSMLTLWQSDDQEA----------RAEFHWRLTL---VVSVVLMALLVVPLSV 317

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +  ++ ++  +  ++ +    F   + +     +     P+L+++L       + +
Sbjct: 318 VNPRQGRVLSMLPAILLYLIFFLLQTSLRSNAGK-GKLDPMLWIWLVNAVYFAIAL 372


>gi|297620918|ref|YP_003709055.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
           86-1044]
 gi|297376219|gb|ADI38049.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
           86-1044]
          Length = 371

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/363 (12%), Positives = 102/363 (28%), Gaps = 11/363 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+L    +   +     + +    + L  I   +  + +  +  +     IP +LP
Sbjct: 4   IIWRYLLSQYFKVMGLCVAAFIAVLLTSR-LDEIAHFAVLSPTPALAAQFILLQIPYILP 62

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    + +  ++  ++++ EL    + G S    + P+LF ++L++   F   + + 
Sbjct: 63  IVIPVSCLISSILLVQRLSKSHELTAFRSCGISLKDFLTPILFSSVLVAFINFYIISELS 122

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                       + +       L            +  +           + +      Q
Sbjct: 123 TYSHYQTIIWKEELRSTNPLHLLRNKHLMGAKGGFFNSLGDSKLGKNAGEVILALPNKNQ 182

Query: 183 THKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDI----SIMKFKSYTLQTESANS 235
           +    +     I  D       +     +    P S D     +  K K+ T        
Sbjct: 183 SRITLFLAKELISDDNFFEGTDVTMITAMPSGDPDSFDHLLVENAAKTKTLTDDFSQLMK 242

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETY---RSEFHKRLTQWLFPVIFGLISIVA 292
                  ND      L             +       SE  +R +       F L+ +  
Sbjct: 243 QKQWKIGNDYLTMEQLLAKLYEEQANGFSVNDINCCYSEIIRRFSLGFSAFSFTLMGLAF 302

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
               +     KKI  + +         +        +  +     I +L +  +S+  L 
Sbjct: 303 GISISRTHSLKKILWVVLLAGGYITTLFIGKSAGQNLSLSLALYTIPHLLIISLSAAVLY 362

Query: 353 MIK 355
            + 
Sbjct: 363 RVN 365


>gi|163853055|ref|YP_001641098.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
 gi|218531865|ref|YP_002422681.1| permease YjgP/YjgQ family protein [Methylobacterium
           chloromethanicum CM4]
 gi|240140388|ref|YP_002964867.1| putative permease [Methylobacterium extorquens AM1]
 gi|254562992|ref|YP_003070087.1| permease [Methylobacterium extorquens DM4]
 gi|163664660|gb|ABY32027.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
 gi|218524168|gb|ACK84753.1| permease YjgP/YjgQ family protein [Methylobacterium
           chloromethanicum CM4]
 gi|240010364|gb|ACS41590.1| putative permease [Methylobacterium extorquens AM1]
 gi|254270270|emb|CAX26266.1| putative permease [Methylobacterium extorquens DM4]
          Length = 362

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/349 (12%), Positives = 97/349 (27%), Gaps = 11/349 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      R+ L   L +  + + +  ++ +         S  ++ +++ Y  P V 
Sbjct: 6   TLGRYFAWRFVRTILGVFLTVFALVYTLDFVELLRRAGDAEGASPGLMAQLALYRTPAVA 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V PF     +   L  ++R  EL++    G S    ++P  F+A+ +      + N +
Sbjct: 66  ESVLPFAVLFGSMAALLQLSRKLELVVARAAGISAWQFLQPGAFVALAIGALAIGAYNPL 125

Query: 122 EPKCRSTIKQLSAKA---QLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
               +    ++ AK                    +D    I+        T      V  
Sbjct: 126 SAALKQRSSEIEAKIFAKSTKAGTGKDLWLRQRSIDGQAIIRAETAVEGTTTLAGVTVFQ 185

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            D         ++    L      L D  V  +    +     +        + +     
Sbjct: 186 FDEAGAFAAQLEAARATLHDGWWELRDVRVLTRD---EPPESHEVYLVASTLDPSQIRQR 242

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L      +          YR ++   L   L  +   L++   +     
Sbjct: 243 FTPPESVPFWQLPETIARHERA-GLDATRYRLQYDVLLATPLLYLAMVLVAATVSL--RF 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
            R       +   +S  F ++     +   +  +    P +  +   + 
Sbjct: 300 FRFGGVGKLVLGGVSAGFVLYVARQVMEG-LGASGMVAPTVAAWFPAVV 347


>gi|325527103|gb|EGD04518.1| putative permease [Burkholderia sp. TJI49]
          Length = 382

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/380 (11%), Positives = 107/380 (28%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++                ++ +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS---------------K 216
            + I +       +                +L        +PI                 
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQKGSYEPPGHWLLKGVTETELTPIKPIAGQPADALNPVYRS 240

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
               +              S +++     ++  L      +     +  + Y     ++L
Sbjct: 241 QQVTLPEYRLRSDLTPQILSVLLVSPERMSIINLFR-YIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFAYL--HTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|189220202|ref|YP_001940842.1| permease [Methylacidiphilum infernorum V4]
 gi|189187060|gb|ACD84245.1| Predicted permease [Methylacidiphilum infernorum V4]
          Length = 405

 Score = 84.3 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 124/371 (33%), Gaps = 14/371 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPT 59
           M++   ++   + ++ L++   + F   +    + + +L+ ++   L I +K+   LIP 
Sbjct: 34  MRTIYKFLFLELFKNSLITTSILTFFLVIANAFRDLSDLLVNNEVPLWISVKLLVSLIPF 93

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           VL    P+   +    +   M+++ EL  + + G S   ++ PV++ A+L S+  F    
Sbjct: 94  VLTFTLPWGLLVAVILLFGKMSQDRELTALKSAGISLGAIMAPVIWFALLYSVLSFAINA 153

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I PK R   K++ +   L    S+ + N      D   +  +                 
Sbjct: 154 YIGPKSRHAFKEIFSDVMLHNPLSFFKSNKTIDQFDGFRLYATNRIGARLEDVYIWETDA 213

Query: 180 DTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDI-------SIMKFKSYTL 228
           D +  +   A    I+ D    R  + L +     ++             S      Y +
Sbjct: 214 DLRPLRSIRASEAEIEPDLAHQRILLTLWNARQEERNVSDPQNVKLVMPGSRATQLPYEI 273

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNP--NNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
                     V K+   +    +  +    +            +EF KRL   L    F 
Sbjct: 274 SLAQLFDRLTVRKSIGLSTLDEIGRSIVAADLFGFTSNPTPVLTEFQKRLAFSLSCFTFV 333

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
           L+    A +         +    + +   + +      +  K    P  I  L   +F  
Sbjct: 334 LVGAPLAIQVQRKETSIGVALSLLIVLSYYVIVLLAEALKAKTNLFPELIIWLPNIIFQS 393

Query: 347 SSIFLLMIKKK 357
              +L+    +
Sbjct: 394 LGFWLIWRVNR 404


>gi|87121690|ref|ZP_01077577.1| hypothetical protein MED121_19119 [Marinomonas sp. MED121]
 gi|86162941|gb|EAQ64219.1| hypothetical protein MED121_19119 [Marinomonas sp. MED121]
          Length = 368

 Score = 84.3 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/362 (10%), Positives = 112/362 (30%), Gaps = 22/362 (6%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           + + +  S +     ++ I    + +  +   +    +   L  I G+ IP+ L ++ P 
Sbjct: 1   MAKEVLVSTMAVSFILLLIIASGRFVSYLGRAAEGKMTFEFLFIILGFHIPSFLQIIIPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
            F +        +    E+ I+   G S++ L    L +A++ ++        + P    
Sbjct: 61  SFFLALLLAYGRLYIENEMSILFACGISKVKLTFYTLGIALIATLVNASISLWLAPTSEY 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI------VDSRDT 181
             +   A+      F +L+   F     +             ++ +FI            
Sbjct: 121 QSQLAKAEQDQLTVFDFLQPGRFQGKGFNTTYVAEITPEEGWMKDVFISNTSKVEGKNIP 180

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                 +A+   ++     ++  +G      P   D  I +F +Y +          +  
Sbjct: 181 TQTLASHAEQIQLEGGDTYLVFKNGTRFEGVPGQLDYRITQFDTYAV-LLDEKGELSIED 239

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            + +  S +   +  N            +E+  R++  +   I  +I         +  +
Sbjct: 240 PSTKPSSEIWRSDDLNEQ----------AEWQWRISLVIMIPILAIIGTSL---SQVNPR 286

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
           + +   +  ++ +         +    +   + P    + ++ +        L       
Sbjct: 287 QGRFFKMLPAILLMILYLGLLIWGRTSLEKGRIPSSFGLWWVHILFGLIAAFLFSLFNEI 346

Query: 360 KI 361
           ++
Sbjct: 347 RL 348


>gi|268594204|ref|ZP_06128371.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268595873|ref|ZP_06130040.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|293399673|ref|ZP_06643825.1| hypothetical protein NGNG_01868 [Neisseria gonorrhoeae F62]
 gi|268547593|gb|EEZ43011.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268549661|gb|EEZ44680.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|291609924|gb|EFF39047.1| hypothetical protein NGNG_01868 [Neisseria gonorrhoeae F62]
          Length = 384

 Score = 84.3 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 141/365 (38%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 15  IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 74

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 75  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVI 134

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L      +Y   +    +  ++ +F+ +  
Sbjct: 135 PWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQD 194

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L   +     
Sbjct: 195 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 254

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V      + + L+                +++E   R++  +  ++     ++A    
Sbjct: 255 DPVSHRRTISTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 301

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +       +L+ 
Sbjct: 302 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 361

Query: 355 KKKYT 359
            +   
Sbjct: 362 VRSMP 366


>gi|240127075|ref|ZP_04739736.1| hypothetical protein NgonS_00198 [Neisseria gonorrhoeae SK-93-1035]
 gi|268685430|ref|ZP_06152292.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268625714|gb|EEZ58114.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 371

 Score = 84.3 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 142/365 (38%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  ++  +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLDRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTCYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD---DLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L      +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L    +    
Sbjct: 182 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V      + + L+                +++E   R++  +  ++     ++A    
Sbjct: 242 DPVSHRRTISTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|296448501|ref|ZP_06890381.1| permease YjgP/YjgQ family protein [Methylosinus trichosporium OB3b]
 gi|296254000|gb|EFH01147.1| permease YjgP/YjgQ family protein [Methylosinus trichosporium OB3b]
          Length = 387

 Score = 84.3 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 112/364 (30%), Gaps = 12/364 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ R I  S  +    +     +  +L  +   +       +L        PTV+
Sbjct: 3   RLLFTYLARRILFSMAVVQFALSVPVVLSYLLYTLTPAA---IRAGLLAPALIGTTPTVV 59

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      M+    + ++     S  ++ +P +  A  + +  +   N+I
Sbjct: 60  YITLPMAIGVATALEFARMSSEGMIAVLYALRLSVWSVCRPAIVCAGAMVLIGYGLANLI 119

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD- 180
            P     ++ +    +  L    LE   F+  D+ L     +      +     V     
Sbjct: 120 APHYAGALQDVINVVRNTLNHRMLEPARFYTFDNGLKTLYLERWETPDIAVNLFVRQLSL 179

Query: 181 -TQTHKIYYAQSGSIDLDRQAIIL--NDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +   A           +IL  + G +  +   S ++ I  F  Y +      S +
Sbjct: 180 AKNQEETITAARAEFRRTPSGVILALSHGSIQTRPFDSTEVRIAGFDEYAMALPMQGSES 239

Query: 238 I----VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +         +      L  N +       L   + +E  KR           L+++   
Sbjct: 240 LPARSWRGVYEMGPLEFL-GNWSVARLDRRLSGEWAAEAAKRFGMPALSFAHTLLAMALV 298

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                V  R+     F+ +++     +    +   +  +P Y  +L   +    +    +
Sbjct: 299 LTFGNVTGRRGASSSFVMIAVPATHIFFLVALETLLRADPRYAILLAALICVEIATAATL 358

Query: 354 IKKK 357
           I ++
Sbjct: 359 ISRR 362


>gi|297565836|ref|YP_003684808.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
 gi|296850285|gb|ADH63300.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
          Length = 378

 Score = 84.3 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/377 (13%), Positives = 111/377 (29%), Gaps = 31/377 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+LR I   F       + +     +L R   V      +  LL+  G  IP +
Sbjct: 1   MTRIDRYLLREILPPFFFGIFLYIALIAFSNLLARAQWV--GGVPVTSLLQWIGLQIPFI 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +      + ++R  ELL++   G S +   + +L  A  L+ F       
Sbjct: 59  FTQTLPLATLLGVLIGYSRLSRENELLVMQAGGISVLRTARWILLGAAALAGFSLYLSER 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P        +        T              D  +    Y+  +       +    
Sbjct: 119 VVPWANQQTAVVWWDKVATGTSGLGWLTGRDLKIGDYLLLFDSYDNAHQEIVNVRLQQWK 178

Query: 181 TQTHKIYYAQSGSIDLDRQAII-----------LNDGEVHRKSPISKDISIMKFKSYTLQ 229
            QT  + +A+ G ++  +  +            L   +      + + +  +       +
Sbjct: 179 GQTLSVVFAERGRLENYQLKLRGFRLYTLDLAKLPVPDFQSLDEVEQYLPQLVRAQNVSR 238

Query: 230 TESANSSTIVLKANDQ-------------NLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
              A+    + +  DQ                        NP   P      R   H  L
Sbjct: 239 DPQASLVITLPQNRDQLVANFAGGGFENPYPPSHWWRRLQNPTLTPTEAREARVNLHSAL 298

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
              L  ++   +++  A +RA          + ++L ++   +   S +   +  +    
Sbjct: 299 AVSLANLVILFLALPVAARRASSP----AVALGLALGLTIAYYAVLS-LGKLMALSGLIP 353

Query: 337 PILYLFLFCISSIFLLM 353
             L ++   + ++ +  
Sbjct: 354 AELGVWSANLLAVAVAF 370


>gi|15677420|ref|NP_274576.1| hypothetical protein NMB1570 [Neisseria meningitidis MC58]
 gi|304387021|ref|ZP_07369276.1| YjgP/YjgQ family permease [Neisseria meningitidis ATCC 13091]
 gi|7226817|gb|AAF41923.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|304338893|gb|EFM04992.1| YjgP/YjgQ family permease [Neisseria meningitidis ATCC 13091]
 gi|316983818|gb|EFV62798.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|325140780|gb|EGC63294.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis CU385]
 gi|325199831|gb|ADY95286.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis H44/76]
          Length = 371

 Score = 84.3 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 142/365 (38%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F    + +  +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L   +     
Sbjct: 182 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+                +++E   R++  +  ++     ++A    
Sbjct: 242 DPVSHRRTIPTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +   +   +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFAVALILLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|119383652|ref|YP_914708.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
 gi|119373419|gb|ABL69012.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
          Length = 373

 Score = 84.3 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 107/361 (29%), Gaps = 20/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R   R  +M       I ++I I+++I   S     L+    +S   I     
Sbjct: 2   ILSTYVARRFLRMLVMIAAIFGAILFLIDIVEQIRRFSDENIGLSGAAGLSLLNITASFY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +    +  +++R++EL+ I  +G S I ++      A L  +      N + 
Sbjct: 62  SILPLITVLAGIALFLNLSRSSELVAIRASGRSGIRVLAAPAVTAALAGMLAVAVLNPVV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD--------------DLYIKISKYNPNN 168
                      A+ +     +    +    L                 + I+ S+ +P+ 
Sbjct: 122 AATTKRYDDAVAQMRSGGGQTVSVGDNAVWLRQALPTRNGNGDETSGQVVIRASRASPDA 181

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           T             T       + +  L + A  L D +    +  + +          L
Sbjct: 182 TTLYDATFMVFAPDTGPTRRIDAATARLTQGAWELTDIKEWPLTQPNPETMARTAPRLEL 241

Query: 229 --QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
                +A       +     +  L               + ++  F   L + L      
Sbjct: 242 PTDLTAARIRDSFGRPEAIPVWQL-PAFIKGLERAGFSAQRHKVWFQMELARPLLLAAMI 300

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
             +I A      +R R+    +  +     G+F+  + +   +  N    P L  +   I
Sbjct: 301 --AIAAVFTMRHMRGRRMGLLVLGAFGCGIGLFFLRN-LAQVLGDNGGIPPALAGWAPPI 357

Query: 347 S 347
            
Sbjct: 358 V 358


>gi|254251664|ref|ZP_04944982.1| hypothetical protein BDAG_00856 [Burkholderia dolosa AUO158]
 gi|124894273|gb|EAY68153.1| hypothetical protein BDAG_00856 [Burkholderia dolosa AUO158]
          Length = 382

 Score = 84.3 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/380 (11%), Positives = 107/380 (28%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVATLISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++                ++ +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEHVTRFVNVGSPSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS---------------K 216
            + I +       +                +L        +PI                 
Sbjct: 181 NVRIYEFDSKFQLRNVRIAQSGRYEPPGHWLLTGVTETELTPIKPVAGQPADALSPVYRS 240

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
               +              S +++     ++  L      +     +  + Y     ++L
Sbjct: 241 QQVTLPEYRLRSDLTPQILSVLLVSPERMSIVNLFR-YIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFAYL--HTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|294678215|ref|YP_003578830.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
 gi|294477035|gb|ADE86423.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
          Length = 366

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 105/316 (33%), Gaps = 12/316 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +  LYI R  G++FL+       + ++I+++++I  +  +  +L+    ++   +P+ L 
Sbjct: 2   TLSLYIARRFGQAFLIVAGAFWGVLFLIEMVEQIRRLDPARGALSDAAHLAALSVPSTLY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +        + R++EL++I   G S + ++   + +A+L+ + L    N I 
Sbjct: 62  TIFPLVVMLSGVVAFLGLARSSELVVIRAAGRSALRMLLAPVTVALLIGVLLVAVGNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYL------EENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
                  +++  + +     +                     I   + N + T       
Sbjct: 122 SATSKRAEEIEGQLRAEGRQTVSIGREGLWMRQGTADGGQAVIHAMRGNADATALYQVTF 181

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVH---RKSPISKDISIMKFKSYTLQTESA 233
              D +   +    + S  L   A +L++ +     R +   +D +  +  S      + 
Sbjct: 182 LLFDAKAGPVRRIDAASAWLTPGAWVLSEAKDWPLGRSTNPERDATRAQTISLPSTLTAE 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           + +      +   +  L                 +       L Q L      L++  A 
Sbjct: 242 SIADSFGAPSAMPIWEL-PGFIRALEAAGFSARRHIVWLQVELAQPLMLAAMVLVA--AG 298

Query: 294 DKRALVRQRKKIHPIF 309
                 R       + 
Sbjct: 299 FTMRPARFGGTGGRVM 314


>gi|168464639|ref|ZP_02698542.1| putative permease [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195632768|gb|EDX51222.1| putative permease [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 366

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 128/354 (36%), Gaps = 19/354 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKTVLVKAAMVLALFTGILAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +    +F+   R   
Sbjct: 122 PWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E H R+T      +  L+         
Sbjct: 242 DPNDTDQMDMRTLWNTDND----------RARAELHWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +  ++ ++  +  ++ +    F   + I     +     P+++++   +  + L
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLIQTSIKSNGGK-GKLDPVIWMWAVNLIYLAL 341


>gi|238798772|ref|ZP_04642243.1| Inner membrane protein yjgP [Yersinia mollaretii ATCC 43969]
 gi|238717404|gb|EEQ09249.1| Inner membrane protein yjgP [Yersinia mollaretii ATCC 43969]
          Length = 364

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 126/361 (34%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  + +LI   L LA+  S    ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALGTSALAAVNTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+   + + L    F    D                 +F+   R   
Sbjct: 122 PWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVTGKEFNRVFLAQLRPNG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q +ILN G  +  + + +D  I  F  Y           
Sbjct: 182 NQRPSVVVADSGHMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQEVQQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A    +  L   N  +           R+EFH RLT  +  VI  L+        A
Sbjct: 242 NSNVAEQMTMKQLWRSNEADA----------RAEFHWRLTLIVSVVIMALL---VVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   S +      N    P+L+++    + + + +I   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSNAG-NGKLDPLLWMWTVNGTYLAIAVILNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|261392198|emb|CAX49712.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis 8013]
          Length = 371

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/365 (11%), Positives = 141/365 (38%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ I  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWIIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F    + +  +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L   +     
Sbjct: 182 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+                +++E   R++  +  ++     ++A    
Sbjct: 242 DPVSHRRTIPTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|238921310|ref|YP_002934825.1| hypothetical protein NT01EI_3454 [Edwardsiella ictaluri 93-146]
 gi|238870879|gb|ACR70590.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 366

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 140/364 (38%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +  V +     N++  + G  IP +  
Sbjct: 2   IIIRYLVRETVKSQVAILFILLLIFFCQKMVRILGAVVNGDIPTNLVFSLLGLGIPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA +      ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGRLYTESEITVMHACGLSKAVLVKAAMVLAFITGALALVNAFWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L E  F    D  Y+       +   Q +F+   R + 
Sbjct: 122 PWSSLHSDEVMAEARANPGLASLAEGQFQSSQDGNYVLFVGNVKDKKFQNVFLAQLRPSG 181

Query: 183 --THKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +   +   Q ++L+ G  +  + + +D  I  F  Y+      ++  
Sbjct: 182 SQRPSVVVADSGHLVEMKDGAQKVVLDSGTRYEGTAMLRDFRITDFVDYSAIIGHKSAML 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A+  ++  L +              ++R+EFH RLT     ++  L+         
Sbjct: 242 DPNNADQASMEALWH----------SQEPSFRAEFHWRLTLVFSVIVMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   S +     ++    P+++++      + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSNGGKD-KLDPMIWMWAVNGFYLLLAVVLNL 347

Query: 358 YTKI 361
           +  I
Sbjct: 348 WDTI 351


>gi|161505034|ref|YP_001572145.1| hypothetical protein SARI_03165 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866381|gb|ABX23004.1| hypothetical protein SARI_03165 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 366

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 128/354 (36%), Gaps = 19/354 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +    +F+   R   
Sbjct: 122 PWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N +           +  R+E H R+T      +  L+         
Sbjct: 242 DPNDTDQMDMRTLWNTD----------SDRARAELHWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +  ++ ++  +  ++ +    F   + I     +     P+++++   +  + L
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLIQTSIKSNGGK-GKLDPVIWMWTVNLIYLAL 341


>gi|94984156|ref|YP_603520.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
 gi|94554437|gb|ABF44351.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
          Length = 352

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/358 (12%), Positives = 107/358 (29%), Gaps = 16/358 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +    +LR + R +       + +     +   + ++     +    L + G + P  L 
Sbjct: 7   TLTRSVLREVLRWYAAGVALFLILQLTDALSTTVGVLLLYHATPLEALSVFGAIAPDKLN 66

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                            +  ++EL  +   G S + L+ P+    +L+ +  F++   + 
Sbjct: 67  RSLVLAVPFAVLLTFGRLQGDSELKAMFAAGVSPLRLVWPLAVPFVLVGVLAFVNTGYVV 126

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   +   +        +  +  ++N  F     L+    +           +      +
Sbjct: 127 PGGLARWDRAWYTIYGTVPPAPSQDNYTFAPPGALFY-AGRVRNGAESGVAQLDGVLIER 185

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             +   AQSG  D   +   ++D  + R     + ++        +  ++         A
Sbjct: 186 GGETVTAQSGIWDTQARTWTVSDAWITRPGQDPRQVAG-----PLVFPQTDTLRPPQPPA 240

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              +   L      +    PE       +   R      P++F L++ V           
Sbjct: 241 AQVSTPVLRARLAADEYATPEQRRVDEHQLATRYADPCTPIVFALVAGVVGLLLR----- 295

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLLMIKK 356
                 F +  +   VF+       ++ +     P L  +L    F + +  L    +
Sbjct: 296 -NRAGAFAATLLVILVFYVLWTTAPQLARVGALPPTLAAWLPNIVFFLVAAALAWRLR 352


>gi|325134627|gb|EGC57267.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M13399]
          Length = 371

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 142/365 (38%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F    + +  +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L   +     
Sbjct: 182 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+                +++E   R++  +  ++     ++A    
Sbjct: 242 DPVSHRRTIPTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +   +   +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFAVALILLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|317153284|ref|YP_004121332.1| permease YjgP/YjgQ family protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943535|gb|ADU62586.1| permease YjgP/YjgQ family protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 380

 Score = 83.9 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 100/356 (28%), Gaps = 8/356 (2%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+++       +       I  +  +  R++    +      +L      IP ++  
Sbjct: 10  LGRYLIQQNLYLMSICLTVGTCIYLLSDVFDRLDDFIKAGLGAETILFYFFVKIPLIVSQ 69

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F +     L  + R+ E+L +   G S    IK  L  A+  S+        +  
Sbjct: 70  LMPAIFLLALVLQLGILTRSKEMLALRAGGVSFAWFIKFFLIYAMFWSLGQLAFSQFLGV 129

Query: 124 KC-RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  +      +          +L+FR    + +    Y   +    + + +     
Sbjct: 130 FGEYEANRIWKEDVRKKQLDELTITDLWFRDGPFIVLAREAYPGKSRASDVVVYEFATDN 189

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
              I    +    +D     L D              + +F S     ++  +  +    
Sbjct: 190 QELIRILTAKKAMIDDNGWGLLDVHELDTRTFVSVTRLSQFLSVRQNLKAYAAVELKGDT 249

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
               L  L              +E  R+ +H + +       F +  +       +    
Sbjct: 250 AQLPLLELSRAIEK-LEESGSNVEILRTIWHTKWSY-----AFSIAVMALLALALVTFSE 303

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                I  SL + F V +G   +     +     P +  +L       L  ++  +
Sbjct: 304 NIYANIGFSLILIF-VQYGVHAVGATAGEQAVLPPFVAAWLGNFVMAALAGMRLAW 358


>gi|254491489|ref|ZP_05104668.1| putative permease, YjgP/YjgQ family [Methylophaga thiooxidans
           DMS010]
 gi|224462967|gb|EEF79237.1| putative permease, YjgP/YjgQ family [Methylophaga thiooxydans
           DMS010]
          Length = 344

 Score = 83.9 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/344 (11%), Positives = 119/344 (34%), Gaps = 20/344 (5%)

Query: 25  FIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNT 84
            I    +  + +   +      +++  + G      L ++ P    +     L  M+ + 
Sbjct: 3   LIYISTRFARYLADAAVGNMPADVIFSLLGLSSLGALSILLPIGAFLAVMLTLGRMSSDN 62

Query: 85  ELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSY 144
           EL ++   G S   +++ V+  +  +++ + +    + P   S   +L  +A+++   + 
Sbjct: 63  ELTVMAACGISTSRVMRNVMLFSGTIALMVAVLSLFVVPDVMSDRYELQTRAKMSANTTG 122

Query: 145 LEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYY-----AQSGSIDLDRQ 199
           L    F    D  +   S+    N      +    + +   + +               +
Sbjct: 123 LIAGSFKESGDGDWTFYSEGLSANKQFMENVFIEIEGKDKPLIFRSETGHFEIDAVTGNK 182

Query: 200 AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPN 259
            ++L  G  +  +   +D +I +F S++L  E  ++  +  +        LL        
Sbjct: 183 FLVLEKGYRYEGNAGDQDFTIAQFASHSLLVEKGDAGEVRERHKAMPTGELLE------- 235

Query: 260 YRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
                     +E   R +  L  ++  L+++  A       ++ +      ++ +     
Sbjct: 236 ---RGSARDIAEVQWRTSAALMTLLLCLMAMPLA---NAGPRQGRYAGFVPAVLLYIVYS 289

Query: 320 WGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLMIKKKYTKI 361
                    + +   P +   +++ +  +  + +L+ ++K  ++
Sbjct: 290 NLLGVNRAWVAKGDLPTWFGGIWVHVLMLGVLLILLNRQKLRRL 333


>gi|16763279|ref|NP_458896.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29144758|ref|NP_808100.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62182905|ref|YP_219322.1| putative permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161617773|ref|YP_001591738.1| hypothetical protein SPAB_05636 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167551265|ref|ZP_02345020.1| putative permease [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|168232819|ref|ZP_02657877.1| putative permease [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168234609|ref|ZP_02659667.1| putative permease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168244032|ref|ZP_02668964.1| putative permease [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168262478|ref|ZP_02684451.1| putative permease [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168821096|ref|ZP_02833096.1| putative permease [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194445077|ref|YP_002043718.1| putative permease [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194450320|ref|YP_002048502.1| permease [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194468992|ref|ZP_03074976.1| putative permease [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194736994|ref|YP_002117399.1| putative permease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197250300|ref|YP_002149398.1| putative permease [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197262941|ref|ZP_03163015.1| putative permease [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|198242439|ref|YP_002218342.1| putative permease [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200386849|ref|ZP_03213461.1| putative permease [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204927295|ref|ZP_03218497.1| putative permease [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205355210|ref|YP_002229011.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859604|ref|YP_002246255.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213022334|ref|ZP_03336781.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213427635|ref|ZP_03360385.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213618569|ref|ZP_03372395.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213650368|ref|ZP_03380421.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|238910634|ref|ZP_04654471.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289824526|ref|ZP_06544085.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25309681|pir||AF1061 probable inner membrane protein STY4817 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505587|emb|CAD06939.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140397|gb|AAO71960.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62130538|gb|AAX68241.1| putative permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161367137|gb|ABX70905.1| hypothetical protein SPAB_05636 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403740|gb|ACF63962.1| putative permease [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194408624|gb|ACF68843.1| putative permease, YjgP/YjgQ family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455356|gb|EDX44195.1| putative permease [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194712496|gb|ACF91717.1| putative permease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197214003|gb|ACH51400.1| putative permease [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197241196|gb|EDY23816.1| putative permease [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197291917|gb|EDY31267.1| putative permease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197936955|gb|ACH74288.1| putative permease [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199603947|gb|EDZ02492.1| putative permease [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204323960|gb|EDZ09155.1| putative permease [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205274991|emb|CAR40065.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205323849|gb|EDZ11688.1| putative permease [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205332944|gb|EDZ19708.1| putative permease [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205337037|gb|EDZ23801.1| putative permease [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205342368|gb|EDZ29132.1| putative permease [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205348722|gb|EDZ35353.1| putative  permease [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206711407|emb|CAR35786.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|320088910|emb|CBY98668.1| Lipopolysaccharide export system permease protein lptF [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|322615642|gb|EFY12562.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618702|gb|EFY15591.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322621885|gb|EFY18735.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627610|gb|EFY24401.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322630916|gb|EFY27680.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322637865|gb|EFY34566.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642323|gb|EFY38929.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322643902|gb|EFY40450.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322651022|gb|EFY47407.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656725|gb|EFY53013.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659851|gb|EFY56094.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322661938|gb|EFY58154.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666314|gb|EFY62492.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672733|gb|EFY68844.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676163|gb|EFY72234.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322680647|gb|EFY76685.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684459|gb|EFY80463.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322717408|gb|EFZ08979.1| putative permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323194204|gb|EFZ79401.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197349|gb|EFZ82489.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201533|gb|EFZ86597.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206047|gb|EFZ91009.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213058|gb|EFZ97860.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323215429|gb|EGA00173.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323219413|gb|EGA03898.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227717|gb|EGA11871.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228887|gb|EGA13016.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236501|gb|EGA20577.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239998|gb|EGA24045.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323241955|gb|EGA25984.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323247896|gb|EGA31833.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251466|gb|EGA35337.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323258168|gb|EGA41845.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263686|gb|EGA47207.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265718|gb|EGA49214.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323270162|gb|EGA53610.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326630368|gb|EGE36711.1| putative permease [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 366

 Score = 83.9 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 128/354 (36%), Gaps = 19/354 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +    +F+   R   
Sbjct: 122 PWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E H R+T      +  L+         
Sbjct: 242 DPNDTDQMDMRTLWNTDND----------RARAELHWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +  ++ ++  +  ++ +    F   + I     +     P+++++   +  + L
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLIQTSIKSNGGK-GKLDPVIWMWAVNLIYLAL 341


>gi|16767724|ref|NP_463339.1| permease [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|167991268|ref|ZP_02572367.1| putative permease [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|16423044|gb|AAL23298.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|205330408|gb|EDZ17172.1| putative permease [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261249567|emb|CBG27434.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996823|gb|ACY91708.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160963|emb|CBW20497.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915575|dbj|BAJ39549.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|323132816|gb|ADX20246.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332991288|gb|AEF10271.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 366

 Score = 83.9 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 128/354 (36%), Gaps = 19/354 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +    +F+   R   
Sbjct: 122 PWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGNSVLFIESVDGSDFHDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E H R+T      +  L+         
Sbjct: 242 DPNDTDQMDMRTLWNTDND----------RARAELHWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +  ++ ++  +  ++ +    F   + I     +     P+++++   +  + L
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLIQTSIKSNGGK-GKLDPVIWMWAVNLIYLAL 341


>gi|325267813|ref|ZP_08134463.1| YjgP/YjgQ family permease [Kingella denitrificans ATCC 33394]
 gi|324980694|gb|EGC16356.1| YjgP/YjgQ family permease [Kingella denitrificans ATCC 33394]
          Length = 374

 Score = 83.9 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 51/367 (13%), Positives = 136/367 (37%), Gaps = 23/367 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   L+    + +   + I+ I    Q +  +   +    +++ +  + G+ +  + P
Sbjct: 2   IYQRQFLKETTITAIAVFVVILAILVFTQGITLLGRAAGGNVAIDAVGTLIGFWVLNLAP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ I  ++G      +KPV+  A+ L + + + +  + 
Sbjct: 62  LLLVLTAYISTLTVLTRYWRDSEMAIWLSSGLGLRQWVKPVMTFALPLMLLIAVLQIFVL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD---DLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E+  F  L      +Y           L  +F+ +  
Sbjct: 122 PWAELRSREYAELLKQKQNLSLVEQGKFTELGKKNGRIYFVEQFDAHAGQLNHLFLREIG 181

Query: 180 DTQTHKIYYAQSGSID----LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT-ESAN 234
           D   +++ +A+SG          + ++L++G  +  +    D   + FK   L T  +  
Sbjct: 182 DDGKNQVIFAESGQFTLEGSDQHRTLVLHNGYRYLGNAGQGDFEQIAFKELRLATNTTPK 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +  +   N      LL                +++E   R++  +  V+   ++I    
Sbjct: 242 LANPIDHRNTIPTIQLLR----------SKDPVHQAELMWRISLPITVVVLCWLAIPI-- 289

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYI--IHKIEQNPYYIPILYLFLFCISSIFLL 352
                 +    + + +++          +++    K  +  ++  +L +    I   +LL
Sbjct: 290 -SYFNPRSGNSYHVLVAVGFFLVYQNSLTWVYGAMKSGKISFWPALLSVHGLTILCAWLL 348

Query: 353 MIKKKYT 359
           M  +   
Sbjct: 349 MRVRSLP 355


>gi|193212373|ref|YP_001998326.1| permease YjgP/YjgQ family protein [Chlorobaculum parvum NCIB 8327]
 gi|193085850|gb|ACF11126.1| permease YjgP/YjgQ family protein [Chlorobaculum parvum NCIB 8327]
          Length = 440

 Score = 83.9 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 83/234 (35%), Gaps = 6/234 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F+ YIL+    +F  + + I+ +  +  + + +  +        I+ ++       +
Sbjct: 1   MKIFDRYILKTHLGTFFFAFVTIMSVFILSFVTKFLERLIGKGLDFGIIAEVVLLQSAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + T      +  ++EL ++   G S   L+ PVL  A+ LS+ +    N+
Sbjct: 61  VGFAVPMAVLVTTVMAFGVLTNSSELTVMRAGGISIYRLVAPVLLAALALSLMMERYNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
           + P+       L A          L++N F  +     I     +     L+ I + D  
Sbjct: 121 LMPEANYRANALFADITRLKPALGLDKNAFSDMIKGYSIMARDVDNKTGELRDIVLYDRA 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAII----LNDGEVHRKS-PISKDISIMKFKSYTL 228
                 +  A  G I+           L DG++H    P       M F     
Sbjct: 181 QPDVRTVILAARGKIEFTPDNTHLVLTLEDGQIHELRLPAMDRYRTMSFSKNRY 234



 Score = 60.4 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 6/108 (5%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           LN          E    Y  E+HK+ +     ++F ++           R+        +
Sbjct: 327 LNVQLKQMQQHREDYRKYMIEYHKKYSLAFACLVFAMVGAPLGVMA---RRGGFGAGAAL 383

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLLMIKK 356
           SL   F ++W       KI       P   ++L    ++   L M+ +
Sbjct: 384 SLFF-FVLYWVLMIGGEKIADQGLLSPAVSVWLPNAILTCAGLFMLYR 430


>gi|13476525|ref|NP_108095.1| hypothetical protein mll7865 [Mesorhizobium loti MAFF303099]
 gi|14027286|dbj|BAB54240.1| mll7865 [Mesorhizobium loti MAFF303099]
          Length = 360

 Score = 83.9 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/354 (11%), Positives = 96/354 (27%), Gaps = 13/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y         +   L ++ + ++I   +     +     +    + ISG  +P ++
Sbjct: 4   TLGRYFFFRYVTITIWFFLGLLALVFLIDFTELSGRTTGLPGFTYGTAVAISGLRMPMIM 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF         L S+NR  EL+I  + G S    + P    A+L         N +
Sbjct: 64  LQTVPFVGLFSAMATLVSLNRRYELVIARSAGVSAWQFLLPCCIGALLFGFVSVGLINPL 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK----ISKYNPNNTLQGIFIVD 177
                S  +Q+  + +   + +   +   +                           +  
Sbjct: 124 AAHAFSLSEQIETQLRSGKSNTVSADAAPWIRQKTSTGDTIIGARAILNQGLEMSDAVFF 183

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D Q + +    +    L      L D +  R    +  I            +      
Sbjct: 184 VLDQQGNIVERKDAAHAYLRDGYWELQDVKTFR----NGTIQPSASDRVPTNLKPEFVQE 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            + +        L                 +  +F   +      V   LI+  A     
Sbjct: 240 RLARPETIPFYDL-PGKIEVARSFGLKANAFAMQFDSLVALPFLLVAMTLIA--ATVSMR 296

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             R  +    I   +   F ++   S ++       +    +  ++  + ++F 
Sbjct: 297 FARMGQSATMILGGVVAGFLLYVV-SVLVKAFGVAGFVPTAIAAWVPVVVAMFF 349


>gi|297624270|ref|YP_003705704.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
 gi|297165450|gb|ADI15161.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
          Length = 353

 Score = 83.9 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 116/360 (32%), Gaps = 10/360 (2%)

Query: 1   MKSFEL--YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIP 58
           M    L  Y+LR     +L+       +  +  +      +     +L ++ ++  Y +P
Sbjct: 1   MSRLRLAGYLLRETAGLYLLGVAAFCLLLSIDTLTVWAGYLIQQNATLGVIARLMLYQLP 60

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             L +  P             + +++EL      G   ++L+ P+L   +L+S+   ++ 
Sbjct: 61  LFLHLSLPVAAVFAVLLATGRLAKDSELKAAYALGVPPLSLLWPLLGFGVLISVAALLNN 120

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             +EP+ +    +L A    A   +  + ++ FR +  LY                +   
Sbjct: 121 GYLEPRGQIAEDELVASFFNARPSAETQRDVSFRQEGGLYYAARIRADTFDRTRAELSGV 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                   +Y A  G+ D +     L + EV R     +  +     + TL       + 
Sbjct: 181 LVYGDDGTLYSAPYGTWDSEVNTWTLEEVEVLR-----EGEAPRLEPTLTLPFTLQADAG 235

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             L A +      L           + +       H+RL      VIF LI+        
Sbjct: 236 ASLSAAENLTLSELYARIEAGRRAGQSVRGDLFNLHRRLADASSAVIFVLIAGALGLHLR 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              +        + L   F ++        +   +P     L   +  +    L +++ +
Sbjct: 296 --GRSAGFGWTIVLLVCFFALWTLSESFFEQGVLSPVVAAWLTTGVVGLIGGALALVRLR 353


>gi|56416250|ref|YP_153325.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197365173|ref|YP_002144810.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56130507|gb|AAV80013.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096650|emb|CAR62265.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 366

 Score = 83.9 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 128/354 (36%), Gaps = 19/354 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +    +F+   R   
Sbjct: 122 PWSSKHQDEVLAEAKATPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E H R+T      +  L+         
Sbjct: 242 DPNDTDQMDMRTLWNTDND----------RARAELHWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +  ++ ++  +  ++ +    F   + I     +     P+++++   +  + L
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLIQTSIKSNGGK-GKLDPVIWMWAVNLIYLAL 341


>gi|121635227|ref|YP_975472.1| hypothetical protein NMC1490 [Neisseria meningitidis FAM18]
 gi|254805325|ref|YP_003083546.1| putative permease [Neisseria meningitidis alpha14]
 gi|120866933|emb|CAM10693.1| conserved integral membrane hypothetical protein [Neisseria
           meningitidis FAM18]
 gi|254668867|emb|CBA06967.1| putative permease [Neisseria meningitidis alpha14]
 gi|254669825|emb|CBA04193.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|254672903|emb|CBA07222.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
 gi|325138630|gb|EGC61189.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           ES14902]
 gi|325142745|gb|EGC65120.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           961-5945]
 gi|325198680|gb|ADY94136.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis G2136]
          Length = 371

 Score = 83.9 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 141/365 (38%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F    + +  +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L   +     
Sbjct: 182 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+                +++E   R++  +  ++     ++A    
Sbjct: 242 DPVSHRRTIPTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|21673570|ref|NP_661635.1| hypothetical protein CT0740 [Chlorobium tepidum TLS]
 gi|21646682|gb|AAM71977.1| membrane protein, putative [Chlorobium tepidum TLS]
          Length = 452

 Score = 83.9 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 101/265 (38%), Gaps = 13/265 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F+ YIL+    +F  + + I+F+  +  + Q +  +        I+L++       +
Sbjct: 11  MKIFDRYILKEHLGTFFFAFVTIMFVFILTFLTQFLERLIGKGLDFRIILEVVALQSAWM 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T    +S+  ++EL ++   G S   L+ PVL  A+ LS+ +    N+
Sbjct: 71  VGLAVPMAVLVSTVMAFSSLTNSSELTVMRAGGISIYRLVAPVLLAALALSLMMERFNNV 130

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
           + P+       L A          +++N F  +     I +   +     L+ I + D  
Sbjct: 131 LMPEANYKANALFADITRMKPGLGIDKNAFSDVIQGYSIMVRDIDNETGELRDIVLYDRG 190

Query: 180 DTQTHKIYYAQSGSIDLDRQAII----LNDGEVHRKSPISKD--------ISIMKFKSYT 227
                 +  A  G I   +        L DG++H  S  + D         +   F +  
Sbjct: 191 RPDVRTVIMAARGRIQFSQDYSHLVLTLEDGQIHELSLPAMDRYRKMVFARNRYVFDATG 250

Query: 228 LQTESANSSTIVLKANDQNLSFLLN 252
              E  +       + + + + LL+
Sbjct: 251 YGFERTDDGKRRRGSKELSAAELLS 275



 Score = 54.6 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 6/106 (5%)

Query: 253 PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISL 312
                     E    Y  E+HK+ +     V+F +I            +           
Sbjct: 341 ERIGQMRENRESFYNYMIEYHKKYSLAFACVVFAMIGAPLGVMA----RHGGFGAGAALS 396

Query: 313 SISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
              F ++W       KI +    +P +  +L    ++   L MI +
Sbjct: 397 LFFFVLYWVLLIGGEKIAERGLLLPAISVWLPNVVLAVTGLFMIYR 442


>gi|145588806|ref|YP_001155403.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047212|gb|ABP33839.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 384

 Score = 83.5 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/375 (12%), Positives = 120/375 (32%), Gaps = 24/375 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            +E Y+ R I  +F      +V +     IL  +  V     +L + L       P+ + 
Sbjct: 8   IYERYLARQIYAAFGFILFALVALFLFFDILSELGSV-QGQYTLALALLHVLLKAPSRIS 66

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + +  V   +   +E  I+   G      +  +  +++ L +   +      
Sbjct: 67  EIIPIAGLIGSIYVFAMLASQSEFTILRIAGLDVKRGLITLGKISLPLIVLTLVMSEWAG 126

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD------------LYIKISKYNPNNTL 170
           P   +  +Q+  KA  +   S  +  ++ +                 Y+ + K   +N +
Sbjct: 127 PYTEAKSEQIRMKALGSSYSSQFKTGVWVKDRLRDEDGSGPVRPGVRYVNVGKVEKDNEI 186

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK------SPISKDISIMKFK 224
           + I + +  D        +       +    +LND    R        P++   S     
Sbjct: 187 RDIRMYEFNDVYNLLSIRSAVSGHFDETGIWVLNDVTETRFKEIKQTDPLNPVFSAQTLT 246

Query: 225 SYTLQTE---SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
              L  E   +    +++L + ++     L    ++     + ++ +   F K++     
Sbjct: 247 HPILTLESEVTPQILSVLLISPEKMSILSLGRFIDHLQENKQDVQRHSIAFWKKVVYPFT 306

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
             +   +++  A     VR       +F  + +        S   +    + +   +  L
Sbjct: 307 IFVMLALALPFAYL--KVRAGSVGIKVFGGIMLGMSFQLFNSLFSNVGMLSAWPAFMTAL 364

Query: 342 FLFCISSIFLLMIKK 356
               +  +  LM  +
Sbjct: 365 TPPLLYFLLALMGLR 379


>gi|254436833|ref|ZP_05050327.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
           307]
 gi|198252279|gb|EDY76593.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
           307]
          Length = 364

 Score = 83.5 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/338 (12%), Positives = 96/338 (28%), Gaps = 12/338 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y  R    +F  +      +  +I +++++        SL  +L++S   +P++L 
Sbjct: 2   ILHRYFARRFAWTFTATFGGFFVLMLLIDLVEQLRR-YGGEASLGDMLQLSLLKLPSLLY 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T      + R++EL++    G S +  +   L + +++        N + 
Sbjct: 61  DILPLIMVLATVATFLGLARSSELIVSRAAGRSALRALVAPLIVTVIIGAITIGVFNPLV 120

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR-----LDDDLYIKISKYNPNNTLQGIFIVD 177
                  +      +                     +    I+    N + T        
Sbjct: 121 AATSKEFEARKTTLRSDAPSVLAISENGLWLRQGDDNSQTVIRAGGANLDGTQLQDVTFI 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI---SKDISIMKFKSYTLQTESAN 234
                 H     ++ + +L   A  L D +V             +I           +  
Sbjct: 181 RFSKTGHPTRRIEAATANLTIGAWDLTDAKVWPLVGNRVAESVATIHTTLRIPSTLTADE 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                   +   +  L     +           ++      L Q  F +   LI   A  
Sbjct: 241 IRDSFGVPSSIAIWEL-PAFIDRLEVAGFSATRHQVWLQMELAQPAFLLAMVLIG--AGF 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
                R  +    +  ++ I F +F+  ++     E  
Sbjct: 298 TMRHQRGGRTGVMVLAAILICFALFFLRNFAQILGENG 335


>gi|311104770|ref|YP_003977623.1| hypothetical protein AXYL_01570 [Achromobacter xylosoxidans A8]
 gi|310759459|gb|ADP14908.1| hypothetical protein AXYL_01570 [Achromobacter xylosoxidans A8]
          Length = 367

 Score = 83.5 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/362 (10%), Positives = 128/362 (35%), Gaps = 8/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I     +    ++ +   + +++ +   +      ++++ ++     T 
Sbjct: 1   MSLFKRSVVSEITSHAGVVFSTLLIVWLSVLLVRLLGEAAGGNIGADVVVVLAALSTITA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP +      +     +T   R +E+++   +G S    ++PVL +AI +++ +     +
Sbjct: 61  LPTILAVSVFIAVLTTVTRNYRESEMVVWFASGLSLADWLRPVLRVAIPVALAVAGLTLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P     I +   + +     S +    F        +  ++     + +   +    +
Sbjct: 121 AAPWAYRQIGEYHERFEQRSDLSKVTAGQFAESSGGNRVFFAEDPLTPSDELGNVFAREN 180

Query: 181 TQTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                     S +    +    + ++L +G  +   P + +I ++ F  Y L+ ES +  
Sbjct: 181 GPEWLSVLTASKAHSETMPNGDRFLVLGEGHRYDLKPGTPEIRLVHFDKYGLRLESKSGG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V +A  +  +         P    +   +  S+   R++  L  +   L++I      
Sbjct: 241 DPVAEA--RANAERSAKARTTPQLIADNTNSSWSQVMWRISLPLAALNLALLAIPLGAVN 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             + +   +    +   +   +       I   + +      ++     ++++ + ++ +
Sbjct: 299 PRLGRSGDLLIAGLVGLLYMNLINLSRAWISNGKLSFGL--GVWAIHAAVAALTVFLLMR 356

Query: 357 KY 358
           + 
Sbjct: 357 RL 358


>gi|238755186|ref|ZP_04616532.1| Inner membrane protein yjgP [Yersinia ruckeri ATCC 29473]
 gi|238706633|gb|EEP99004.1| Inner membrane protein yjgP [Yersinia ruckeri ATCC 29473]
          Length = 364

 Score = 83.5 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 129/364 (35%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRVLGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G  +  LI   L L++L S    ++   + 
Sbjct: 62  LILPLSLFLGLLMTYGKLYTESEITVMHACGLGKRPLIIAALILSMLTSGLAAVNAIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+   + + L E  F    D   +           Q +F+   R + 
Sbjct: 122 PWSSKHQDEVLNDARANPSLAALVEGQFQSSQDGNAVLFVGSVSGKEFQRVFLAQLRPSD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +                  Q ++LN G  +  + + +D  I  F  Y        +  
Sbjct: 182 NQRPSVVVADKGHMAERPDGSQVVLLNQGTRYEGTALLRDFRITDFTDYQAVIGHQVAQQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   +++ L + +  +           R+EFH RLT  +  VI  ++         
Sbjct: 242 DNNIVEQMSMAALWHSSEQDA----------RAEFHWRLTLIVSVVIMAML---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   S +     +     P++++++   + + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSNGAK-GKLDPMVWIWVVNGAYLALALVLNL 347

Query: 358 YTKI 361
           +  +
Sbjct: 348 WDSL 351


>gi|213963082|ref|ZP_03391340.1| permease YjgP/YjgQ family protein [Capnocytophaga sputigena Capno]
 gi|213954166|gb|EEB65490.1| permease YjgP/YjgQ family protein [Capnocytophaga sputigena Capno]
          Length = 508

 Score = 83.5 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 113/297 (38%), Gaps = 22/297 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI+    ++FL +   ++ I     I   I+ ++     L I+ K   Y IP +
Sbjct: 1   MKIIDRYIITQFLKNFLGALSILILIFVFHTIFTYIDELAGRGLELWIIFKFLIYFIPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ P    + +     S   + E   +  +G S + +++P++ L  LLSI  F   N 
Sbjct: 61  IPIIMPLAVVIASIMTFGSFAESYEFAAMKASGISLMRVMRPLIILMALLSIGTFFLANN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +  L +          + E +F  + +D+ IK+ K + +N      ++  + 
Sbjct: 121 VIPVAYREVYTLRSNIAKVKPAMAIAEGVFSNIGEDISIKVGKKSGDNDQFLESVLIHKK 180

Query: 181 TQTHKIYYA--------QSGSIDLDRQAIILNDGEVHRKSPISKDISI-------MKFKS 225
           T                +S   + +   +IL DG  +     +   +        + FK 
Sbjct: 181 TPDRVNRTVINAKRGELKSAKSNPNFLQLILEDGTYYEDIKTNTYETQQKMPFAKVHFKK 240

Query: 226 YTLQTESANSSTIVLK-------ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
           Y +  + ++ + +              N++ L     +  +   + +  Y +   +R
Sbjct: 241 YVINLDLSHLNNVDFNEKSDATTYRMMNVNQLDYAIDSLRSDFKQNITDYGNNMFRR 297



 Score = 38.8 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/95 (11%), Positives = 33/95 (34%), Gaps = 4/95 (4%)

Query: 255 PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI 314
            ++  YR +L+  +      +    +   +   ++         +R+     P+  +  I
Sbjct: 363 QSDLEYRYKLMNLHIMNLSDKFALTIACFVLFFVAAPLGAL---IRKGGIGLPLVFA-MI 418

Query: 315 SFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
            F  ++     +  I +N    P L  ++  +  +
Sbjct: 419 LFLSYYFIGMFMKNIAENNTINPALAPWIPALILM 453


>gi|218768538|ref|YP_002343050.1| conserved integral membrane hypothetical protein [Neisseria
           meningitidis Z2491]
 gi|121052546|emb|CAM08886.1| conserved integral membrane hypothetical protein [Neisseria
           meningitidis Z2491]
 gi|308389704|gb|ADO32024.1| hypothetical protein NMBB_1799 [Neisseria meningitidis alpha710]
 gi|319410787|emb|CBY91172.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis WUE 2594]
 gi|325128631|gb|EGC51500.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis N1568]
 gi|325130631|gb|EGC53374.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           OX99.30304]
 gi|325144870|gb|EGC67158.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M01-240013]
 gi|325201754|gb|ADY97208.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M01-240149]
 gi|325204534|gb|ADY99987.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M01-240355]
 gi|325205695|gb|ADZ01148.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M04-240196]
          Length = 371

 Score = 83.5 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 141/365 (38%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F    + +  +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L   +     
Sbjct: 182 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+                +++E   R++  +  ++     ++A    
Sbjct: 242 DPVSHRRTIPTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|107023406|ref|YP_621733.1| permease YjgP/YjgQ [Burkholderia cenocepacia AU 1054]
 gi|105893595|gb|ABF76760.1| permease YjgP/YjgQ [Burkholderia cenocepacia AU 1054]
          Length = 382

 Score = 83.5 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/380 (11%), Positives = 107/380 (28%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYITFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++                ++ +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS---------------K 216
            + I +       +                +L        +PI                 
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQTGRYEPPGHWLLKGVTETELTPIKPITGQPADALNPVYRS 240

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
               +              S +++     ++  L      +     +  + Y     ++L
Sbjct: 241 QQVSLPEYRLHSDLTPQILSVLLVSPERMSIINLFR-YIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFAYL--HTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|291045045|ref|ZP_06570753.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291011048|gb|EFE03045.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 384

 Score = 83.5 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 140/365 (38%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 15  IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 74

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I PV+  A+  +I + + +  + 
Sbjct: 75  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWISPVMQFAVPFAILIAVMQLWVI 134

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L      +Y   +    +  ++ +F+ +  
Sbjct: 135 PWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQD 194

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L   +     
Sbjct: 195 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 254

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V      + + L+                +++E   R++  +  ++     ++A    
Sbjct: 255 DPVSHRRTISTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 301

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +       +L+ 
Sbjct: 302 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 361

Query: 355 KKKYT 359
            +   
Sbjct: 362 VRSMP 366


>gi|209519257|ref|ZP_03268059.1| permease YjgP/YjgQ family protein [Burkholderia sp. H160]
 gi|209500337|gb|EEA00391.1| permease YjgP/YjgQ family protein [Burkholderia sp. H160]
          Length = 382

 Score = 83.5 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/375 (11%), Positives = 112/375 (29%), Gaps = 25/375 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRIYERYFARQIYLTFVFILFAFSGLFFFFDLINELNSVGHGNYKFQYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L I  ++   +
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNRALRSLLKIGIPLVIVTYLIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL---------DDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  +   +  +  ++ +              ++ + +  P+ T+ 
Sbjct: 121 VGPYTDQLSERVRLEALGSSVSTNFQSGVWVKDTLTERADGEQVTRFVNVGELRPDATIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-----------SPISKDISI 220
            + I +                        +L      +              ++     
Sbjct: 181 NVRIYEFDSKFRLSNVRIAQSGRYQPPGHWLLTGVTDTQLLDVAPAPGTPADALNPVYRA 240

Query: 221 MKFKSYTLQTE---SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
            +            +    +++L + D+   F L     +     +  + Y     ++L 
Sbjct: 241 TQVTLPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTENHQDTQRYEIALWRKLL 300

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
                 +  ++S+  A                I L +SF +F      I  +  N +  P
Sbjct: 301 YPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWPAP 358

Query: 338 ILYLFLFCISSIFLL 352
           +       +  +  L
Sbjct: 359 LTAATPGLVYLVLGL 373


>gi|85709344|ref|ZP_01040409.1| predicted permease [Erythrobacter sp. NAP1]
 gi|85688054|gb|EAQ28058.1| predicted permease [Erythrobacter sp. NAP1]
          Length = 417

 Score = 83.5 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 122/361 (33%), Gaps = 11/361 (3%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R +    L        +  + ++L+  + V+     + ++ K+ G LIP    +
Sbjct: 8   IDRYIFRLVIVPMLGVFALAASLLLLDKMLRLFDFVAVEGGPIGVVFKMLGALIPEYASL 67

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +        +  ++EL  +   G S   L++    + ++L          I+P
Sbjct: 68  AIPLGLLLGVLLAFRKLATSSELDTMRAVGLSYWRLLRVPYAITLVLVAVNIALVFYIQP 127

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL-QGIFIVDSRDTQ 182
             R   +Q+  + +     + ++   F  L D + ++I +   +     GIF   S    
Sbjct: 128 VSRYYYEQMEYELRSGALGASIKVGEFTTLADRMALRIERSEDDGQRLIGIFARVSNSRD 187

Query: 183 THKIYYAQSGSID---LDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTI 238
                 A+ GS      D   IIL   E        S+   ++ F  + L  +       
Sbjct: 188 QVLSISAREGSFMATTDDPDTIILRLTEGTIVQDTGSETPRVLSFSRHDLPIDLPAVEEF 247

Query: 239 VLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             +   + +  L  LL     +     +  +  ++ F+ R  + +  ++  L+++  A  
Sbjct: 248 RARGEASREYILPELLR-IGWSEQAEEDERDAVQAAFNYRTVEVVMMLLMPLLAVALAIP 306

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                    +    I +     +      I      +P     L+      +++ + M  
Sbjct: 307 PKRSTSALGVFVSIILVVAYHKINQYGEDIAALGRIDPIIA--LWGPFCAFAALIIWMYY 364

Query: 356 K 356
           +
Sbjct: 365 R 365


>gi|238793061|ref|ZP_04636690.1| Inner membrane protein yjgP [Yersinia intermedia ATCC 29909]
 gi|238727661|gb|EEQ19186.1| Inner membrane protein yjgP [Yersinia intermedia ATCC 29909]
          Length = 364

 Score = 83.5 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 123/354 (34%), Gaps = 19/354 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  + +LI   L LA+  S    ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALFTSALAAVNTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+   + + L    F    D                 +F+   R   
Sbjct: 122 PWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVTGREFNRVFLAQLRPNG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q +ILN G  +  + + +D  I  F  Y           
Sbjct: 182 NQRPSVVVADSGHMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQEVQQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A   ++  L   N  +           R+EFH RLT  +  +I  L+         
Sbjct: 242 NNNVAEQMSMKQLWRANQPDT----------RAEFHWRLTLIVSVIIMALL---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +  ++ ++  +  ++ +    F   S +      N    P +++++   + + +
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSNAG-NGKLDPFIWMWIVNGAYLAV 341


>gi|240122360|ref|ZP_04735316.1| hypothetical protein NgonP_00185 [Neisseria gonorrhoeae PID332]
 gi|240125094|ref|ZP_04737980.1| hypothetical protein NgonSK_02547 [Neisseria gonorrhoeae SK-92-679]
 gi|254494457|ref|ZP_05107628.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268680947|ref|ZP_06147809.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|226513497|gb|EEH62842.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268621231|gb|EEZ53631.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
          Length = 371

 Score = 83.5 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 141/365 (38%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L      +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRNREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L   +     
Sbjct: 182 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V      + + L+                +++E   R++  +  ++     ++A    
Sbjct: 242 DPVSHRRTISTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|171463872|ref|YP_001797985.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193410|gb|ACB44371.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 386

 Score = 83.5 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 58/377 (15%), Positives = 125/377 (33%), Gaps = 24/377 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            +E Y+ + I  +F      +V +     IL  + LV   T +L + L  +    P+ + 
Sbjct: 8   IYERYLAKQIYAAFGFILFALVALFLFFDILSELGLV-QGTYTLPLALLHALLKAPSRIS 66

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + +  V   +   +E  I+   G      +  +  ++I L     I    I 
Sbjct: 67  EIIPIAGLIGSIYVFAMLASQSEFTILRIAGLDVKRGLIALTKISIPLIALTLIMSEWIG 126

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD------------LYIKISKYNPNNTL 170
           P   +   Q+  KA  +   S     ++ +                 Y+ + K + +N +
Sbjct: 127 PYTEAKSDQIRMKAMGSAYSSQFRTGVWVKDRLRDEDGSGPVRPGVRYVNVGKVDKDNEI 186

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK------SPISKDISIMKFK 224
           + I + +  DT       +       +    +LND    R        P++   S   F 
Sbjct: 187 RNIRMYEFDDTYHLLSIRSAVSGQFDETGVWVLNDVTETRFKETKQSDPLNPVFSAQTFT 246

Query: 225 SYTLQTE---SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
              +  E   +    +++L + ++     L    ++     +    +   F K++     
Sbjct: 247 RPIVTLESEVTPQILSVLLISPEKMSIMSLGRFISHLRENKQDAHRHSIAFWKKVVYPFT 306

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
             +   +++  A  +             I L +SF +F      +  +   P  I  L  
Sbjct: 307 IFVMLTLALPFAYLKVRAGSVGIKVFGGIMLGMSFQLFNSLFSNVGLLGSWPALITALTP 366

Query: 342 FL--FCISSIFLLMIKK 356
            L  F ++   L  + K
Sbjct: 367 PLLYFLLALAGLRWVSK 383


>gi|197105523|ref|YP_002130900.1| hypothetical protein PHZ_c2060 [Phenylobacterium zucineum HLK1]
 gi|196478943|gb|ACG78471.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 351

 Score = 83.5 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/355 (10%), Positives = 100/355 (28%), Gaps = 13/355 (3%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
             LY+ R      L +   +V I  ++ +L     +         +   +   +P ++  
Sbjct: 3   LGLYLFRLAFGRILAALAVLVGILQILDLLDVTTEILDRELGAQGVAYYALLRLPRLVEQ 62

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P      +      +   + +  + +TG S   +    L  A L++    +    + P
Sbjct: 63  AAPLAVLAGSLFAFAKLAGESAVTAMRSTGISAYRITLLALPAAALVAAAQLVIGMAVAP 122

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +  + + +               +++      D  +          +  + I        
Sbjct: 123 RTDAALTRWWQ--ATTPREEVKPQDVITFRVGDDIVSARPSADAQRMSEVVIYRRDGAGR 180

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
                A   ++  D+ A  L        S         +  ++T     A+   +    +
Sbjct: 181 LVQRTAADAAVY-DQGAWRLIAPRFEAISEGEVQTGAAESMTWTRSLRPADVRALQSGGS 239

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             + +        +          Y ++ H+        ++     ++ A   AL   R 
Sbjct: 240 TISAAEARRAL--HGGVSVRPKTYYDTQLHRAWAAPAACLV----MLLLAAPAALANFRG 293

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMI 354
               + +    +  +F  F      + ++     +L  +    +F    +  L+ 
Sbjct: 294 GGTTLMVQCLAAGLLFLVFDGAFTALGESGAAPAMLAAWGAPVIFGALGVTALLY 348


>gi|33603373|ref|NP_890933.1| hypothetical protein BB4399 [Bordetella bronchiseptica RB50]
 gi|33577497|emb|CAE34762.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 422

 Score = 83.5 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/371 (12%), Positives = 115/371 (30%), Gaps = 24/371 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   Y+ R I RS  +  L ++ +     ++  ++ V     S+  L  +    +PT 
Sbjct: 31  MRTARRYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGDK-FSMLALFYMQALALPTR 89

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  + +  EL+I+  +G S + L+  +  + I L I   +    
Sbjct: 90  LYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLGMLWVITIPLMIGATLLSEF 149

Query: 121 IEPKCRSTIKQLSAKAQLA----LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           + P       +     +         S          +    I I     +  ++ + + 
Sbjct: 150 VTPAAEIKSGEADLTFRGKAGGGRLNSGYWFKEPTPQNGTRIINIKTLLADGQVKDVTLY 209

Query: 177 DSRDT-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKS------------PISKDISIMKF 223
           + R   +   ++ A +G         +L D    R              P      + K 
Sbjct: 210 EFRSDLEMTALWTAPNGRFSRGDL--VLTDVSETRIDEHAPSALADAKQPKEPPARVTKV 267

Query: 224 KSYTLQTESANSSTI-VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
               L T  +    +  +   ++  +  L        +     +       ++L      
Sbjct: 268 PELKLDTTLSPERLLARVLTPERMSALTLVDYIEYLRHNQLQYDRQVVALWRKLVYPFTL 327

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           ++   I+          R+      +FI + +  G F   + +   +     + P +   
Sbjct: 328 LVMITIAAPIGFM--QTRRGGVGAKVFIGILLGVGFF-MLNQLALNVGMLSRWPPWITAL 384

Query: 343 LFCISSIFLLM 353
              + ++ L  
Sbjct: 385 GPNLGALLLAF 395


>gi|260596296|ref|YP_003208867.1| lipopolysaccharide ABC transporter permease LptF [Cronobacter
           turicensis z3032]
 gi|260215473|emb|CBA27590.1| Lipopolysaccharide export system permease protein lptF [Cronobacter
           turicensis z3032]
          Length = 370

 Score = 83.5 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 127/345 (36%), Gaps = 19/345 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLALLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+L  I   ++     
Sbjct: 62  LILPLSLFLALLMTLGRLYTESEITVMHACGLSKAVLVKAAMVLALLTGIIAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  D   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATDGNAVLFIESVDGSKFKDVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  FK Y         + 
Sbjct: 182 NARPSVVVADSGELSQRKDGSQVVTLNQGTRFEGTAMLRDFRITDFKDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A   ++  L   +  +           R+EFH RLT     ++  L+         
Sbjct: 242 DPDDAEQMDMQTLWQADSKSA----------RAEFHWRLTLVFAVIVMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           +  ++ ++  +  ++ +    F   + +     +     P+++++
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQTSLRSNGAK-GKLDPLIWMW 332


>gi|311281181|ref|YP_003943412.1| permease YjgP/YjgQ family protein [Enterobacter cloacae SCF1]
 gi|308750376|gb|ADO50128.1| permease YjgP/YjgQ family protein [Enterobacter cloacae SCF1]
          Length = 366

 Score = 83.1 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 57/354 (16%), Positives = 131/354 (37%), Gaps = 19/354 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILALFTGIVAALNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  D   +   +       + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQASDGNSVLFIESVDGKKFRDVFLAQIRTKG 181

Query: 183 T--HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG+I   +   Q + LN+G     + + +D  +  FK+Y         S 
Sbjct: 182 NARPSVVVADSGNITQQKDGSQVVHLNEGTRFEGTAMLRDFRVTDFKNYQAIIGHQTVSL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   N+  L N + N            R+E H RLT      I  L+         
Sbjct: 242 DPSDTEQMNMLTLWNTDTNGA----------RAELHWRLTLVATVFIMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +  ++ ++  +  ++ +   VF+     I    +     P++++++  +    L
Sbjct: 289 VNPRQGRVLSMLPAMLLY-LVFFLLQTSIRSNGEKGKLDPMVWMWVVNLLYFAL 341


>gi|295675784|ref|YP_003604308.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1002]
 gi|295435627|gb|ADG14797.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1002]
          Length = 382

 Score = 83.1 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/375 (11%), Positives = 112/375 (29%), Gaps = 25/375 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRIYERYFARQIYLTFVFILFAFSGLFFFFDLINELNSVGHGNYKFQYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++   +
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNRALRSLLKIGVPLVIVTYLIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL---------DDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  +   S  +  ++ +              ++ + +  P+ T+ 
Sbjct: 121 VGPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTLTERADGEQVTRFVNVGELRPDATIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-----------SPISKDISI 220
            + I +                        +L      +              ++     
Sbjct: 181 NVRIYEFDSKFRLSNIRIAQSGRYQPPGHWLLTGVTDTQLLDVARAPGTPADALNPVYRA 240

Query: 221 MKFKSYTLQTE---SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
            +            +    +++L + D+   F L     +     +  + Y     K++ 
Sbjct: 241 NQVTLPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTENHQDTQRYEIALWKKVL 300

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
                 +  ++S+  A                I L +SF +F      I  +  N +  P
Sbjct: 301 YPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWPAP 358

Query: 338 ILYLFLFCISSIFLL 352
           +       I  +  L
Sbjct: 359 LTAATPGLIYLVLGL 373


>gi|170697654|ref|ZP_02888742.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria IOP40-10]
 gi|170137402|gb|EDT05642.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria IOP40-10]
          Length = 382

 Score = 83.1 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/380 (11%), Positives = 107/380 (28%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGIPLVIITYMIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++                ++ +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGNLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS---------------K 216
            + I +       +                +L        +PI                 
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQTGRYEPPGHWLLKGVTETELTPIKPISGAPADALNPVYRS 240

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
               +              S +++     ++  L      +     +  + Y     ++L
Sbjct: 241 QQVTLPEYRLRSDLTPQILSVLLVSPERMSIINLFR-YIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFAYL--HTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|294012648|ref|YP_003546108.1| putative permease [Sphingobium japonicum UT26S]
 gi|292675978|dbj|BAI97496.1| putative permease [Sphingobium japonicum UT26S]
          Length = 407

 Score = 83.1 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 126/357 (35%), Gaps = 8/357 (2%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R I    L + +    +  + ++L   + V++    ++++ ++   ++P  L + 
Sbjct: 6   DRYLARLIALPMLGTLVISAMLLVLDKMLSLFDFVAAEGGPVSVVWRMLANMMPEYLSLG 65

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +        +  ++EL ++   G S   L++     AI L++  F     ++P 
Sbjct: 66  IPIGLMLGILLAFRKLALSSELDVMRAVGLSYGRLLRVPYMFAIALALLNFGIVGFVQPL 125

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY-NPNNTLQGIFIVDSRDTQT 183
            R   + L  + +     + ++   F  L   + ++I +  +    LQGIF+        
Sbjct: 126 SRHAYEALRFELRSGALGASIKVGEFTNLGKRMTLRIERSLDEGRNLQGIFVRAVGKDGQ 185

Query: 184 HKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                A  G      D D     L DG +   +P  K   I+ F S+ L  +        
Sbjct: 186 TVAVTAAQGEFLATDDPDTIIFRLRDGVLVNDAPKYKSPRILSFSSHDLPIDLPQIERFR 245

Query: 240 LKANDQN-LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            +  D+      L    ++P    +L    R+ FH R+ +    ++  L ++  A     
Sbjct: 246 GRDVDREKTIPELVTIGHDPATPEKLRNEIRANFHFRMVEVAMMLLLPLAALAFAIPPKR 305

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                 +    + +     V      +      +P     L+      + + L M  
Sbjct: 306 STSALGVFLSIVFIVTYHKVNEYGQGVGSLGRIDPIIA--LWGPFLLFAGLILWMYH 360


>gi|59801587|ref|YP_208299.1| hypothetical protein NGO1228 [Neisseria gonorrhoeae FA 1090]
 gi|194097861|ref|YP_002000906.1| hypothetical protein NGK_0281 [Neisseria gonorrhoeae NCCP11945]
 gi|239998342|ref|ZP_04718266.1| hypothetical protein Ngon3_02533 [Neisseria gonorrhoeae 35/02]
 gi|240014487|ref|ZP_04721400.1| hypothetical protein NgonD_07553 [Neisseria gonorrhoeae DGI18]
 gi|240016933|ref|ZP_04723473.1| hypothetical protein NgonFA_07151 [Neisseria gonorrhoeae FA6140]
 gi|240079727|ref|ZP_04724270.1| hypothetical protein NgonF_00199 [Neisseria gonorrhoeae FA19]
 gi|240117144|ref|ZP_04731206.1| hypothetical protein NgonPID_01570 [Neisseria gonorrhoeae PID1]
 gi|240121009|ref|ZP_04733971.1| hypothetical protein NgonPI_04421 [Neisseria gonorrhoeae PID24-1]
 gi|268602832|ref|ZP_06136999.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|59718482|gb|AAW89887.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193933151|gb|ACF28975.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|268586963|gb|EEZ51639.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|317163631|gb|ADV07172.1| hypothetical protein NGTW08_0198 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 371

 Score = 83.1 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 141/365 (38%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L      +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L   +     
Sbjct: 182 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V      + + L+                +++E   R++  +  ++     ++A    
Sbjct: 242 DPVSHRRTISTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|33598433|ref|NP_886076.1| hypothetical protein BPP3926 [Bordetella parapertussis 12822]
 gi|33574562|emb|CAE39209.1| putative membrane protein [Bordetella parapertussis]
          Length = 422

 Score = 83.1 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/372 (12%), Positives = 115/372 (30%), Gaps = 26/372 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   Y+ R I RS  +  L ++ +     ++  ++ V     S+  L  +    +PT 
Sbjct: 31  MRTARRYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGDK-FSMLALFYMQALALPTR 89

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  + +  EL+I+  +G S + L+  +  + I L I   +    
Sbjct: 90  LYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLGMLWVITIPLMIGATLLSEF 149

Query: 121 IEPKCRSTIKQLSAKAQLA----LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           + P       +     +         S          +    I I     +  ++ + + 
Sbjct: 150 VTPAAEIKSGEADLTFRGKAGGGRLNSGYWFKEPTPQNGTRIINIKTLLADGQVKDVTLY 209

Query: 177 DSRDT-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK--------------DISIM 221
           + R   +   ++ A +G         +L D    R    +                ++ +
Sbjct: 210 EFRSDLEMTALWTAPNGRFSRGDL--VLTDVSETRIDEHAPSALADAKQPKELPARVTKV 267

Query: 222 KFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
                            VL     +   L++       +     +       ++L     
Sbjct: 268 PELKLDTTLSPERLLARVLTPERMSALTLVD-YIEYLRHNQLQYDRQVVALWRKLVYPFT 326

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
            ++   I++ A       R+      +FI + +  G F   + +   +     + P +  
Sbjct: 327 LLVM--ITVAAPIGFMQTRRGGVGAKVFIGILLGVGFF-MLNQLALNVGMLSRWPPWITA 383

Query: 342 FLFCISSIFLLM 353
               + ++ L  
Sbjct: 384 LGPNLGALLLAF 395


>gi|116690488|ref|YP_836111.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia HI2424]
 gi|170733809|ref|YP_001765756.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia MC0-3]
 gi|116648577|gb|ABK09218.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia HI2424]
 gi|169817051|gb|ACA91634.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia MC0-3]
          Length = 382

 Score = 83.1 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/380 (11%), Positives = 107/380 (28%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYITFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++                ++ +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS---------------K 216
            + I +       +                +L        +PI                 
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQTGRYEPPGHWLLKGVTETELTPIKPITGQPADALNPVYRS 240

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
               +              S +++     ++  L      +     +  + Y     ++L
Sbjct: 241 QQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFR-YIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFAYL--HTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|320335464|ref|YP_004172175.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
           21211]
 gi|319756753|gb|ADV68510.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
           21211]
          Length = 379

 Score = 83.1 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/383 (11%), Positives = 104/383 (27%), Gaps = 35/383 (9%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +    L        I            +        ++L+  G  +P  L 
Sbjct: 2   ILTRYVTRELLPPLLAGTALFTAILSFGYFFVSSQWL--KNVPPGLILQWIGAQVPDTLV 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P    +        +    EL+ + + G S   + +P   +A L+++        + 
Sbjct: 60  KVLPMGVVLMVVVAFGRLATERELIAVQSGGISLGRVARPATVIAALVAVLAVWLSLWVA 119

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+     + L          + L                   +    + G+ +       
Sbjct: 120 PRLNVEARGLYWDTLTGGGLTTLSGRTTDLGGGLTLYLGGYDSATRRMTGVRVQQWDKDN 179

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKS-----PISKDISIMKFKSYTLQTESANSST 237
                   +     +   + L D  V+R +      +             +       +T
Sbjct: 180 AELGTLVFARDGTFENNQLQLRDYAVYRVNFAAVRDLEAVSDDPSKLRSAIGDVFTAVNT 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNY-----------------------RPELLETYRSEFHK 274
              K     L   L+       Y                       +    +  R + ++
Sbjct: 240 PPNKDATLTLDTGLSRKETLARYADAIGADSEGWPQLITKLTAPGVKAADRQAARVDLNR 299

Query: 275 RLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           +L   +  ++  L ++  A +      R     + I+L I+   +  F   I      P 
Sbjct: 300 KLALPIGNLVLVLAALPFALR----YGRTLGTSLGIALLIAVAYYLLFFVGIAVANMLPA 355

Query: 335 YIPI-LYLFLFCISSIFLLMIKK 356
              + ++L     +++ L ++++
Sbjct: 356 LPELGVWLANLVFAALGLTLLRR 378


>gi|300905894|ref|ZP_07123627.1| hypothetical protein HMPREF9536_03886 [Escherichia coli MS 84-1]
 gi|301304160|ref|ZP_07210276.1| hypothetical protein HMPREF9347_02760 [Escherichia coli MS 124-1]
 gi|300402363|gb|EFJ85901.1| hypothetical protein HMPREF9536_03886 [Escherichia coli MS 84-1]
 gi|300840573|gb|EFK68333.1| hypothetical protein HMPREF9347_02760 [Escherichia coli MS 124-1]
 gi|315256878|gb|EFU36846.1| putative permease [Escherichia coli MS 85-1]
          Length = 344

 Score = 83.1 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 119/360 (33%), Gaps = 18/360 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  +L+     +     + +  +   ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIKDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N  ++  L N   +      +                +  +   L+++          
Sbjct: 241 PGNTFSVRQL-NHYIHYLQETGQ---------------PILTLAMILLAVPFTFTAPRSP 284

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                  + + + +    +  +  +++         P+  L L     +  L +   Y +
Sbjct: 285 --GMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYWYDR 342


>gi|121591520|ref|ZP_01678785.1| inner membrane protein YjgP [Vibrio cholerae 2740-80]
 gi|121546628|gb|EAX56818.1| inner membrane protein YjgP [Vibrio cholerae 2740-80]
          Length = 277

 Score = 83.1 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 90/281 (32%), Gaps = 15/281 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +     L  +     +   L++  F R  D   +       N  L  +F+       
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +        +      +   RQ I L DG  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
                       LLN                ++E   R++ 
Sbjct: 242 AERDWEALPTLSLLN----------NADRRAQAELQWRISL 272


>gi|254247470|ref|ZP_04940791.1| hypothetical protein BCPG_02268 [Burkholderia cenocepacia PC184]
 gi|124872246|gb|EAY63962.1| hypothetical protein BCPG_02268 [Burkholderia cenocepacia PC184]
          Length = 382

 Score = 83.1 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/380 (11%), Positives = 107/380 (28%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYITFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLAANQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++                ++ +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS---------------K 216
            + I +       +                +L        +PI                 
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQTGRYEPPGHWLLKGVTETELTPIKPITGQPADALNPVYRS 240

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
               +              S +++     ++  L      +     +  + Y     ++L
Sbjct: 241 QQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFR-YIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFAYL--HTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|307294585|ref|ZP_07574427.1| permease YjgP/YjgQ family protein [Sphingobium chlorophenolicum
           L-1]
 gi|306879059|gb|EFN10277.1| permease YjgP/YjgQ family protein [Sphingobium chlorophenolicum
           L-1]
          Length = 406

 Score = 83.1 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 127/357 (35%), Gaps = 8/357 (2%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R I    L + +    +  + ++L   + V++    ++++ ++   ++P  L + 
Sbjct: 6   DRYLARLIALPMLGTLVISAMLLVLDKMLSLFDFVAAEGGPVSVVWRMLANMMPEYLSLG 65

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +        +  ++EL ++   G S   L++     AI L++  F     ++P 
Sbjct: 66  IPIGLMLGILLAFRKLAMSSELDVMRAVGLSYGRLLRVPYMYAIALALLNFGIVGFVQPL 125

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY-NPNNTLQGIFIVDSRDTQT 183
            R   + L  + +     + ++   F  L   + ++I +  +    LQGIF+        
Sbjct: 126 SRHAYEALRFELRSGALGASIKVGEFTNLGKRMTLRIERSLDEGRNLQGIFVRAMGKDGQ 185

Query: 184 HKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                A  G      D D     L DG +   +P  K   I+ F S+ L  +        
Sbjct: 186 TVAVTAAQGEFLATDDPDTIIFRLRDGVLVNDAPKYKSPRILSFSSHDLPIDLPQIEKFR 245

Query: 240 LKANDQN-LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            +  D+      L    ++P    +L    R+ FH R+ +    ++  L ++  A     
Sbjct: 246 GRDVDREKTIPELVMIGHDPGTPDKLRNEIRANFHFRMVEVAMMLLLPLAALAFAIPPKR 305

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                 +    + +     V      +    + +P     L+      + + L M  
Sbjct: 306 STSALGVFLSIVFIVTYHKVNEYGQGVGSLGKIDPIIA--LWGPFLLFAGLILWMYH 360


>gi|291060242|gb|ADD72977.1| putative permease, YjgP/YjgQ family [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 372

 Score = 83.1 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 118/355 (33%), Gaps = 7/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  ++Y+L      F +  +    I   I IL  +    S+    + L+KI    IP  
Sbjct: 1   MKILQVYMLDMFLPIFFLVLVCASMILDAIDILVNLTQFISNGYRFSSLVKIWYVSIPHY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P       T  +  +    E L I   G S  +++ P       L+I +F  +N 
Sbjct: 61  VLLCCPLSVLFAATYTVRILYVQNEFLAIHFGGLSFFSIVGPWFGFMCFLAIGIFAFDNS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +S   ++ A+       +   + +    D  +      Y+    +    +V  ++
Sbjct: 121 VVVVSQSKKDEIIARTVSYAQGNSENDVVASSFDGKIISIAGAYHRGQKVLVDMLVIMKN 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           +        ++ +    +   +L    V+  +   K +      S+ L+           
Sbjct: 181 SNGTIQKLIEAHTAHWQKDRWVLIKPVVYTITHEMKLMVSEYLDSFELREPLELFDHQDF 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                ++   +    +   Y  +        F+K+    L   I   +S       + ++
Sbjct: 241 LTKGMSI-QKIKETLHTLKYASKPHRELSIRFYKKFYFPLTMCIMLCLSF---LTGSFLK 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQ---NPYYIPILYLFLFCISSIFLL 352
           +R  I  IF S+ ++   +      I    +   +P++     +  F     ++ 
Sbjct: 297 KRSLIMYIFCSVVLASAYYVVEMTSIVCAREEYFSPFWGVFFPVLTFLFLIFYVW 351


>gi|170746989|ref|YP_001753249.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653511|gb|ACB22566.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 363

 Score = 83.1 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 108/349 (30%), Gaps = 12/349 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      R+ L   + +  + + +  ++ +         S  ++ ++S Y  P V 
Sbjct: 7   TLGRYFAARFLRTVLGVFVTVFALVYTLDFVELLRRAGEAQGASAGLMAQLSLYRTPAVA 66

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V PF     +   L  ++R  EL++    G S    ++P LF+A+ L        N +
Sbjct: 67  EGVLPFAVLFGSMAALLQLSRKLELVVARAAGISAWQFLQPGLFVALALGALAVGVYNPV 126

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRL---DDDLYIKISKYNPNNTLQGIFIVDS 178
               +    ++ AK     T +   ++L+ R    D +  ++        T      V +
Sbjct: 127 SAMLKQRSTEIEAKIFAKSTKASSGKDLWIRQKGLDGEAILRAETAVEGTTTLAGVSVFT 186

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            D          +    L      L+D        ++ D     F +Y + +        
Sbjct: 187 FDAAGKFAEQLVAARAMLHDGYWELSDVR-----VLTPDAPPESFDTYLIASNLDPGQVR 241

Query: 239 VLKANDQNLSFLLNP-NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                 +++ F   P               YR ++     + +  V   +++   +    
Sbjct: 242 QRFTPPESVPFWQLPTTIARTERAGLDATRYRLQYDVLWARPVLFVAMVIVAATVSL--R 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
             R       +   ++  F ++     +           P+   F   +
Sbjct: 300 FFRFGGVGKLVLGGVAAGFALYVVRQVMEGLGASGLVAAPVAAWFPAVV 348


>gi|238760356|ref|ZP_04621497.1| Inner membrane protein yjgP [Yersinia aldovae ATCC 35236]
 gi|238701416|gb|EEP93992.1| Inner membrane protein yjgP [Yersinia aldovae ATCC 35236]
          Length = 364

 Score = 82.7 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 124/361 (34%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  + +LI   L LAI+ S    ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALVLAIVTSALAAVNTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   + + L    F    D                 +F+   R   
Sbjct: 122 PWSSKHQDDVLNDARANPSLAALAGGQFKSSTDGNAALFIGNVNGKEFNRVFLAQLRPNG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G +       Q ++LN G  +  + + +D  I  F  Y           
Sbjct: 182 NQRPSVVVADRGHMTERPNGSQVVVLNKGTRYEGTALLRDFRITDFVDYQAIIGHQEVQQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                    +  L + +              R+EFH RLT  +  +I  L+        A
Sbjct: 242 NNNVVEQMTMKQLWSSDEPEA----------RAEFHWRLTLIVSVIIMALL---VVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   S +      N    P+++++    + + + +I   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSNAG-NGKLDPLIWMWAVNGTYLAIAVILNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|283786943|ref|YP_003366808.1| permease [Citrobacter rodentium ICC168]
 gi|282950397|emb|CBG90045.1| putative permease [Citrobacter rodentium ICC168]
          Length = 366

 Score = 82.7 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 49/375 (13%), Positives = 136/375 (36%), Gaps = 31/375 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  LIK  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLIKAAMILALFTGIIAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSKHQDEVLAEAKANPGMAALAQGQFQQASNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L   +           +  R+E H R+T      +  L+         
Sbjct: 242 DPNDTDQMDMRTLWTTD----------TDRARAELHWRITLIFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM---- 353
           +  ++ ++  +  ++ +    F   + +     +     P+++++L  +  + L +    
Sbjct: 289 VNPRQGRVLSMLPAMLLYLMFFLIQTSLKSNGGK-GKLDPVIWMWLVNLLYLALAIGLNL 347

Query: 354 --------IKKKYTK 360
                   ++ ++++
Sbjct: 348 WDTVPVRRLRARFSR 362


>gi|206561016|ref|YP_002231781.1| putative permease [Burkholderia cenocepacia J2315]
 gi|198037058|emb|CAR52979.1| putative permease protein [Burkholderia cenocepacia J2315]
          Length = 382

 Score = 82.7 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/380 (11%), Positives = 107/380 (28%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYITFIFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++                ++ +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS---------------K 216
            + I +       +                +L        +PI                 
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQTGRYEPPGHWLLKGVTETELTPIKPISGQPADALNPVYRS 240

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
               +              S +++     ++  L      +     +  + Y     ++L
Sbjct: 241 QQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFR-YIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFAYL--HTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|312879634|ref|ZP_07739434.1| permease YjgP/YjgQ family protein [Aminomonas paucivorans DSM
           12260]
 gi|310782925|gb|EFQ23323.1| permease YjgP/YjgQ family protein [Aminomonas paucivorans DSM
           12260]
          Length = 337

 Score = 82.7 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 113/341 (33%), Gaps = 14/341 (4%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           + +     + +  +LV     SL +++++  Y +P V+ +  P    +        ++ N
Sbjct: 1   MLLVAGNLLFKIADLVIQRGVSLGVVVRLFLYYLPGVVVLTIPMGSLLAALLGFGRLSAN 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E++ +   G +   +++PV++ ++L+S+        + P        L     +  T  
Sbjct: 61  VEIVALKAAGVAFQRIVRPVIWASLLVSLGSMALNETLVPLAERAAVNLLRYEVMQETPP 120

Query: 144 YLEENLFFR-----LDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDR 198
             +E +F +         +         +  +  I + +  + +  +I  A  G      
Sbjct: 121 LFKERIFLKEEKDGHLKRVIYINRMRPRSGKMADILVQEFEEDRLSRIIAAPRGEWVRGE 180

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSY--TLQTESANSSTIVLKANDQNLSFLLNPNPN 256
               + DG+V       K   +  F+     L        T  L     NL  +   +  
Sbjct: 181 WW--IEDGKVFEVDAQGKVRLLFTFRKQGLQLHLNPKEVETQSLDPQQMNLFQM-RDSIR 237

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
               +       R   + RL      V+  L+   A    +  ++      + +S+ I F
Sbjct: 238 RLEEQGADATRLRVLLNLRLAVPWASVVLALVGAAA---GSRPQRSSSSVGLGLSVVIVF 294

Query: 317 GVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLMIKK 356
             +   S+     E +    +   +        +   ++++
Sbjct: 295 FYYVTLSFCQSLGEASYLPAVVAAWFPNLIFLVLGGFLVRR 335


>gi|78067268|ref|YP_370037.1| YjgP/YjgQ like transporter [Burkholderia sp. 383]
 gi|77968013|gb|ABB09393.1| YjgP/YjgQ like transporter [Burkholderia sp. 383]
          Length = 382

 Score = 82.7 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/380 (11%), Positives = 107/380 (28%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIITYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++                ++ +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS---------------K 216
            + I +       +                +L        +PI                 
Sbjct: 181 NVRIYEFDSKFQLRNVRIAQTGRYEPPGHWLLKGVTETELTPIKPISGQPADALNPVYRS 240

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
               +              S +++     ++  L      +     +  + Y     ++L
Sbjct: 241 QQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFR-YIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFAYL--HTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|157157059|ref|YP_001465770.1| putaitve permease [Escherichia coli E24377A]
 gi|157079089|gb|ABV18797.1| putaitve permease [Escherichia coli E24377A]
          Length = 366

 Score = 82.7 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 131/361 (36%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E + R+T      +  L+         
Sbjct: 242 DPNDTDQMDMRTLWNTDTD----------RARAELNWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + +     +     P L+++   +  + L +I   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGK-GKLDPTLWMWTVNLIYLALAIILNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|62260254|gb|AAX77892.1| unknown protein [synthetic construct]
          Length = 395

 Score = 82.7 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 120/358 (33%), Gaps = 12/358 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 28  ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYSQGLGIDSIVKFVILTIPENVS 87

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  L   + L+I   I+   + 
Sbjct: 88  LVAPIAIFLAIVICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTIITLITVMYLN 147

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  + T+    A        S + +    +  D   I I   + N         ++    
Sbjct: 148 PLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIYIGNKSGNTLSDVFLYQNTPQDG 207

Query: 183 THKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +K+  A +  I  D+ A      +  ++ K+  + + S    K         +      
Sbjct: 208 EYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYTIFDNSDRDYNH 267

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D+    L                 Y++EF  R+   +  ++    S++A     L  
Sbjct: 268 DRVDR----LYMHTLIENFNDKNNGTAYKAEFLGRINNAISVIVS---SLLALALCRLRP 320

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
           ++ K   +  S+ +   ++   +  I+ +  N      +  +L     +   +  I+K
Sbjct: 321 RQNKYAKLLPSVVV-LAIYLCTNMFINTLMANSSVPVWIGFWLPHIFFTIFAVRTIRK 377


>gi|270265132|ref|ZP_06193395.1| permease YjgP/YjgQ family protein [Serratia odorifera 4Rx13]
 gi|270041066|gb|EFA14167.1| permease YjgP/YjgQ family protein [Serratia odorifera 4Rx13]
          Length = 364

 Score = 82.7 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 130/356 (36%), Gaps = 19/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +   +++ +          N++L +    +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFCQNLVKVLGDAVDGNVPTNLVLSLLALGVPKMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +  ++E+ ++   G  + TLI   + LA++ S    ++     
Sbjct: 62  LILPLSLFLGLLMTLGRLYTDSEITVMHACGLGKRTLIIAAMVLALITSAVAAVNVFWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        + ++A+   + + L E  F    D   +        +T   +F+   R   
Sbjct: 122 PVASRYQDVVISEAKANPSIAGLAEGQFKPSQDGNAVLFIGNVKGSTFNDVFLAQLRPNG 181

Query: 183 T--HKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G I+      Q + L+ G     + + +D  I  F  Y         + 
Sbjct: 182 NQRPSVVVAERGKINQLKDGSQVVTLDKGTRFEGTALLRDFRITDFNDYKAVVGHRAVAI 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A   ++  L   +  +           R+EFH RLT     +   +++++      
Sbjct: 242 DGNQAEQMSMQALWQSDDPDA----------RAEFHWRLTL---VLSVAIMALLVVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +  ++ ++  +  ++ +    F   + +     +     P+++L++   +   + +
Sbjct: 289 VNPRQGRVLSMLPAILLYLIFFLLQTSLRSNGGK-GKLDPMIWLWVVNAAYFAIAL 343


>gi|171316729|ref|ZP_02905941.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MEX-5]
 gi|171098079|gb|EDT42894.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MEX-5]
          Length = 382

 Score = 82.7 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/380 (11%), Positives = 104/380 (27%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGIPLVIITYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKA---------QLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ 171
           + P      +++  +A         Q  +                 ++ +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAAHENGEQVTRFVNVGNLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS---------------K 216
            + I +       +                +L        +PI                 
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQTGRYEPPGHWLLTGVTETELTPIKPISGAPADALNPVYRS 240

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
               +              S +++     ++  L      +     +  + Y     ++L
Sbjct: 241 QQVTLPEYRLRSDLTPQILSVLLVSPERMSIINLFR-YIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFAYL--HTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|46143410|ref|ZP_00135308.2| COG0795: Predicted permeases [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208575|ref|YP_001053800.1| hypothetical protein APL_1103 [Actinobacillus pleuropneumoniae L20]
 gi|307246019|ref|ZP_07528101.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307248123|ref|ZP_07530151.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|307250354|ref|ZP_07532303.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307252738|ref|ZP_07534629.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307255000|ref|ZP_07536818.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307257154|ref|ZP_07538926.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|307259436|ref|ZP_07541161.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|307261582|ref|ZP_07543250.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|307263771|ref|ZP_07545377.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|126097367|gb|ABN74195.1| hypothetical protein APL_1103 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|306852954|gb|EFM85177.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306855300|gb|EFM87475.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306857629|gb|EFM89736.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306859770|gb|EFM91792.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306861873|gb|EFM93849.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306864316|gb|EFM96227.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306866372|gb|EFM98235.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306868705|gb|EFN00514.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306870892|gb|EFN02630.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 343

 Score = 82.7 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 112/338 (33%), Gaps = 15/338 (4%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           + +  Q++  +N   S     +++L + G  +P +   + P    +     L      +E
Sbjct: 1   MFFSQQLITVLNSAVSGKVPTDLVLSLLGLGMPALAQFMLPLSLFVALLLTLGRFYAESE 60

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           + ++   G  +  L K   FL+I  +     +   + P   +   ++ A+A+    FS L
Sbjct: 61  ITVMRACGIGKSLLTKVAFFLSIFTTALAVYNVFWLTPWAINKQSEMLAEAKSNPRFSAL 120

Query: 146 EENLFFRLDDDLYIKISKYNPNNTLQGIFIVD--SRDTQTHKIYYAQSGSID---LDRQA 200
               F      +    +  N  N L  I++     +      +  A+SG +       Q 
Sbjct: 121 SAGQFMTAGGYVLFIENINNEQNKLNDIYVFQPDQQKKNRPSVVVAESGQLQGLPNGDQI 180

Query: 201 IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNY 260
           + L +   +  +    D  I  F SY       +  +        + + L+         
Sbjct: 181 LTLENSTRYEGTANVADFRISHFDSYQAYLGYQDVDSNEKLVQRADFNKLM--------- 231

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
             +     ++E   R    L   +  L+++  +       +  K+ P  +   I F +  
Sbjct: 232 -ADQSNEAKAELQWRFALILAVPLMALLAVPMSSVNPRQGRFAKVIPAVLLYLIYFLLQS 290

Query: 321 GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                    + +   +  L    F I ++ +     K+
Sbjct: 291 SLKSSGASGKLDATLLMPLVSIAFFILAMVMNFWDTKW 328


>gi|307824320|ref|ZP_07654546.1| permease YjgP/YjgQ family protein [Methylobacter tundripaludum
           SV96]
 gi|307734700|gb|EFO05551.1| permease YjgP/YjgQ family protein [Methylobacter tundripaludum
           SV96]
          Length = 383

 Score = 82.7 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 110/339 (32%), Gaps = 16/339 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              +  +   + R+ L     IV I    Q ++ ++       S   L+ + G       
Sbjct: 23  TVLDKMVALDLLRTLLAVWSVIVVIIVSRQFIRILDRAVEGQVSNQTLMTVLGLKTIIAS 82

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    M    VL  M R+ E+  + + G    T+ + +  L   LS+        +
Sbjct: 83  AAFLPAALFMAVLMVLGRMYRDQEMSAVASAGGGAGTVYRSIFLLVFPLSVLSAGLSFYV 142

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   + +++L  + + +     +    F        +   +   ++       V  R  
Sbjct: 143 SPWAEAMMEELMHQDKESADLRGIAAGKFSEYSQGDLVFYVEKIDDDKTMHEVFVQHRQG 202

Query: 182 QTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
               I  A+ G +    D + I+L +GE  +  P + +  + +F  Y ++ E+  S+   
Sbjct: 203 DRLAIINAEVGRLRDLPDGRYIVLENGERIQGQPGTVNYVLEQFTEYAVRMETKESAANF 262

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            K +  + +   +   N+            +E  +R +     +   L+S +A     + 
Sbjct: 263 GKESVASGTLASSGQIND-----------IAELQRRFSIP---MGIVLLSFIAVPLAQMS 308

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
            +      + +   I F            +        +
Sbjct: 309 PRGGVYGNMLVGFLIYFSYGNFIRVSQSWVMNQTIPAWL 347


>gi|218692648|ref|YP_002400860.1| hypothetical protein ECED1_5114 [Escherichia coli ED1a]
 gi|218430212|emb|CAR11213.2| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli ED1a]
 gi|324005134|gb|EGB74353.1| putative inner membrane protein [Escherichia coli MS 57-2]
          Length = 366

 Score = 82.7 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 132/361 (36%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++S L N + +            R+E + R+T      +  L+         
Sbjct: 242 DPNDTDQMDMSTLWNTDTD----------RARAELNWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + +     +     P L+++   +  + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGK-GKLDPTLWMWTVNLIYLALAIVLNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|187250532|ref|YP_001875014.1| permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
 gi|186970692|gb|ACC97677.1| Permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
          Length = 364

 Score = 82.7 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 128/361 (35%), Gaps = 6/361 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y+++ +   FL +   +VFI +++  ++  NL  +    +  + K    L+P V 
Sbjct: 4   NIISKYMIKNLLTFFLGALFVLVFIFFMMHFIKLFNLAMTFGADMLWVFKTLVKLVPDVF 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +     L +M+ N E++ +   G S   + KP+   A+ L + +F   N I
Sbjct: 64  SLCAPMAFQLAVLLTLGNMSENGEIIALRAAGFSFKEITKPLFIFALFLFLVIFSFTNWI 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK   +        +  +    LE   F  + D      S     N +  + +++  D+
Sbjct: 124 TPKNTKSFLDARNNVRGRIGKVILEPKTFMEIGDWSLYMESLDPKTNLMSQVRLLNKNDS 183

Query: 182 QTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPIS-KDISIMKFKSYTLQTESANSST 237
             +         I     D   + L DG++ R S      I    FKSY +      +  
Sbjct: 184 ANYTTKINALSGIVNVTSDYVGLKLFDGQMQRVSSEDPSKIMAANFKSYHVTFPLVRAKE 243

Query: 238 IVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             L+  +     L+          +            + L      ++     +V +  +
Sbjct: 244 RRLREEEFTTPQLIARIYSGELTDKERAEHKTNVAMRQVLALSPLVLVLLSCPLVFSFGK 303

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              +    +  I I LS    +  G S +  K E   Y+ P L +    I S +L   + 
Sbjct: 304 RANKAWGMLWSIVIVLSFYMLLMAGVS-LGKKYEIAAYFAPFLPIAAGLIVSRYLWKTRL 362

Query: 357 K 357
           K
Sbjct: 363 K 363


>gi|296114025|ref|YP_003627963.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis RH4]
 gi|295921719|gb|ADG62070.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis RH4]
 gi|326566094|gb|EGE16251.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis BC1]
 gi|326572162|gb|EGE22158.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis BC7]
 gi|326573712|gb|EGE23670.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis O35E]
          Length = 369

 Score = 82.7 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/373 (11%), Positives = 109/373 (29%), Gaps = 18/373 (4%)

Query: 1   MK--SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIP 58
           MK      Y++R    +   + + +  +  V   L  ++ +S  T +L   L    Y  P
Sbjct: 1   MKSWILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNISE-TYTLTDALLFILYRSP 59

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             L    P    +     L  +  ++EL+++   G S   ++   +  A++  +      
Sbjct: 60  YFLVQFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVVISLGVN 119

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
             + P        + A        +           D+  +    Y  N    G      
Sbjct: 120 QFVLPTANQHAAAIRADTIYDKLITIDGYWSVNHDGDNQDVVYISYADNEGGLGEVKRYQ 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-----------DISIMKFKSYT 227
                          + L +   ++N  +      +S              +  + K  T
Sbjct: 180 LKDGQLITALKAKSGVYLPQSDDVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKILT 239

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
           L     +   +  +  D +LS L   +     ++      +   F ++L      +   L
Sbjct: 240 LPIAPTDVYLLTKEPEDLSLSSLY-AHRQLMAHQGTRSLRHELAFWQKLLSPFAVLSLVL 298

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
           ++          R +     + ++L       +                 ++ L    +S
Sbjct: 299 VASSFVFGSL--RSQGLGLRVVLALLTGLLFSYLTDLTGFVALATGLSPLLMALVPIVLS 356

Query: 348 SI-FLLMIKKKYT 359
           ++  + ++ +K +
Sbjct: 357 AMAGMYLLNRKSS 369


>gi|241668815|ref|ZP_04756393.1| hypothetical protein FphipA2_08605 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877347|ref|ZP_05250057.1| permease [Francisella philomiragia subsp. philomiragia ATCC 25015]
 gi|254843368|gb|EET21782.1| permease [Francisella philomiragia subsp. philomiragia ATCC 25015]
          Length = 360

 Score = 82.7 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 120/358 (33%), Gaps = 12/358 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 2   ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQQAYSQGLGIDSIIKFVILTIPGNVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  +     L+I  F++   I 
Sbjct: 62  LVAPIAIFLAIVICFGKYFANNEMFVTLAGGVTWMQIVKNTMKPVYALTIITFLTVMYIN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  + T     A        S + ++   +  D   I I   + N        + + ++ 
Sbjct: 122 PLSKQTQDIYQASLTAKALLSSITDDKIIKTTDGKVIYIKSKSGNTLKDVFLYMATDNSD 181

Query: 183 THKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +K+  A    +  D+ A     +D  ++ K P + + +    K+        +      
Sbjct: 182 EYKVVTAPVAEVITDKGAAYVDFHDAHIYTKEPKTSEYTYDTAKNAIYTIFDTSDRDYNH 241

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D+    L            +     R EF  R+   +  ++    S++A     L  
Sbjct: 242 DKVDR----LYMHTLIENFTDKDDGTVSRGEFFGRINNSISVIVA---SLLALALCRLRP 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
           ++ K   +  S+ +   V+   +  ++ +         +  +L         +  I+K
Sbjct: 295 RQNKYAKLLPSVVV-LAVYLCSNMFVNTLMTGGKLPVWIGLWLPHIFFIIYAIRTIRK 351


>gi|146313281|ref|YP_001178355.1| permease YjgP/YjgQ family protein [Enterobacter sp. 638]
 gi|145320157|gb|ABP62304.1| permease YjgP/YjgQ family protein [Enterobacter sp. 638]
          Length = 366

 Score = 82.4 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 126/354 (35%), Gaps = 19/354 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  D   +   +    +    +F+   R   
Sbjct: 122 PWSSKHQDEVLAEAKANPGMAALAQGQFQQASDGSSVLFIESVDGSRFNDVFLAQIRTKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F++Y       N + 
Sbjct: 182 NARPSVVVADSGQLAQRKDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAVVGHQNVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   ++  L+N +              R+E H RLT      +  L+         
Sbjct: 242 DPTDTEQMDMRTLINTD----------TNRARAELHWRLTLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +  ++ ++  +  ++ +    F   + I     +     P+++ +      + L
Sbjct: 289 VNPRQGRVLSMLPAMLLYLVYFLLQTSIKSNGGK-GKIDPMIWTWAVNGLYLLL 341


>gi|134296647|ref|YP_001120382.1| permease YjgP/YjgQ family protein [Burkholderia vietnamiensis G4]
 gi|134139804|gb|ABO55547.1| permease YjgP/YjgQ family protein [Burkholderia vietnamiensis G4]
          Length = 382

 Score = 82.4 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/380 (11%), Positives = 107/380 (28%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  ++E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAASSEFTIFRVSGLATNQALRSLLKIGVPLVIITYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++                ++ +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS---------------K 216
            + I +       +                +L        +PI                 
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQTGRYEPPGHWLLKGVTETELTPIKPIAGQPADALNPVYRS 240

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
               +              S +++     +L  L      +     +  + Y     ++L
Sbjct: 241 QQVSLPEYRLRSDLTPQILSVLLVSPERMSLINLFR-YIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFAYL--HTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|240116444|ref|ZP_04730506.1| hypothetical protein NgonPID1_09463 [Neisseria gonorrhoeae PID18]
 gi|260441666|ref|ZP_05795482.1| hypothetical protein NgonDG_11382 [Neisseria gonorrhoeae DGI2]
 gi|268602116|ref|ZP_06136283.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268586247|gb|EEZ50923.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
          Length = 371

 Score = 82.4 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 140/365 (38%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I PV+  A+  +I + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWISPVMQFAVPFAILIAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L      +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L   +     
Sbjct: 182 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V      + + L+                +++E   R++  +  ++     ++A    
Sbjct: 242 DPVSHRRTISTAQLI----------GSSNPQHQAELMWRISLTVSVLLLC---LLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +   +  +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|110598486|ref|ZP_01386757.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
 gi|110339936|gb|EAT58440.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
          Length = 435

 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 109/283 (38%), Gaps = 14/283 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+     FL + + I+F+  +       +       + + ++++       +
Sbjct: 1   MKIIDRYILKSHVGPFLFAFITILFVLILQFFASFADRFIGRGIAFSAIVELIILQSAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +       S+  N+E+ ++  +G S   L+ PVL +A+LLS+ +    NI
Sbjct: 61  VGLAAPMAVLIAVVMAFGSLTTNSEMTVLRASGISLYRLMFPVLCVALLLSLCVERFNNI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           + P      K L      A     L+EN F  L D   I + + +     ++G+ I D  
Sbjct: 121 VLPLANYHAKSLMVDIARAKPAFGLKENAFSTLVDGYSILVREADDQSKEIRGVVIYDRS 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILN----DGEVHRK-SPISKDISIMKFKSYTLQTESAN 234
                 +  A+ G+I+       L     DGE+H+   P  +    + FK Y    ES+ 
Sbjct: 181 RPNFTTMETAERGTIEFSGDFQYLVMTLLDGEIHQVKQPAHQVYRNLSFKKYRFVFESSG 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
                  AN             +       L +   EF KR+ 
Sbjct: 241 FGFARTSANRLRTG--------DSELSARELLSIGDEFQKRIA 275



 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 6/105 (5%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           L+    + +    +   Y + +HK+ +  L   +F L+           R+        +
Sbjct: 322 LDAERQSISANRSMYNRYMAAYHKKYSLSLACFVFVLVGAPLGVLA---RRGGFGVGAGM 378

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLM 353
           SL   F ++W        I +     P+L ++L    IS+I +L+
Sbjct: 379 SLLF-FVLYWMLMISGETIAERGLLDPMLSMWLGNIVISAIGILL 422


>gi|332296606|ref|YP_004438529.1| permease YjgP/YjgQ family protein [Thermodesulfobium narugense DSM
           14796]
 gi|332179709|gb|AEE15398.1| permease YjgP/YjgQ family protein [Thermodesulfobium narugense DSM
           14796]
          Length = 365

 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 109/356 (30%), Gaps = 9/356 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K F  YIL+     F    L    +    + ++ I LV+ +  S     K++   +P  +
Sbjct: 7   KLFWSYILKDFLPFFFFGLLAFSGLMLAGESMRTIKLVADNQGSFLTGAKLAACGLPYSI 66

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     ++ ++ N EL+ + + G S      P + + I+ S   F +   +
Sbjct: 67  AFAFPMATLLGVLMAVSRISSNWELVALRSAGLSIFKFSLPFIIIGIIFSTVSFFTFEKL 126

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYNPNNTLQGIFIVDS 178
                   + + AK       +  +  LF          +I  +K     T+    +   
Sbjct: 127 AYPLLDKSRYIIAKDLKKELNTERQNVLFKLPPDSPQPKFIIFAKDYKPATMSLQDVYIQ 186

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST- 237
                       S  +       + + G  +  S     +  + F+   +       +  
Sbjct: 187 EFDNEFLKRTIYSSELSFTGNRWVASKGLSYEFSKDGIIVGRLDFEKLIVPLGVLPQTVK 246

Query: 238 --IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                K  D +   LL+   N+ +   +       + + +L+       F  I +     
Sbjct: 247 ALPTKKPRDMSFFELLSYLSNSKDIVDKS---LYVDLYNKLSLPFACFAFACIGVAFGIA 303

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                          ++   + +F  F+ + +     P+        L  I  IF+
Sbjct: 304 SERKSSAIGFGIAITTVLFYYLIFSLFTTLGYMSYLPPFIASFGADILITIFGIFM 359


>gi|152998004|ref|YP_001342839.1| permease YjgP/YjgQ family protein [Marinomonas sp. MWYL1]
 gi|150838928|gb|ABR72904.1| permease YjgP/YjgQ family protein [Marinomonas sp. MWYL1]
          Length = 371

 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 119/360 (33%), Gaps = 23/360 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + +  S     L ++ +    +    +  ++    +   L  I GY +P+ + 
Sbjct: 4   RLFRYLAKEVLVSTAGVTLILLLVILSGRFSFYLGRIADGKMTFEFLFVILGYHVPSFVQ 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+ P  F +        +    E+ ++ ++G S++ L    L +A L+ +        + 
Sbjct: 64  MILPLAFFLALLLSFGRLYIENEMSVLFSSGISKVKLAGYTLGIAFLVGLVSASINFWLA 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       + S        F +L    F           S        Q       R   
Sbjct: 124 PYSEYKAAEASQAQNQLSAFDFLIPGRFEGSGQRTTYIDSFTKEGWMNQIFLSDVVRKKD 183

Query: 183 THKIYYAQSGSI-------DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           T+      + +        + ++  ++  +G  +   P + +  I +F +Y ++ ES + 
Sbjct: 184 TNIPIQTFAANAEQIRISSEDNQNYLVFKNGTRYEGKPGTANYRITQFDTYAIRMESKD- 242

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            +I+     QN   L+N +              + E   R++  L   I  +I +     
Sbjct: 243 ESIIDDPYTQNTLSLINSDKLLE----------KVELQWRISLVLIIPILAIIGLSL--- 289

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLM 353
             +  ++ +   +  ++ +         +    +   + P  + + ++    I    LL 
Sbjct: 290 SQVNPRQGRFFKMLPAILLMILYIALLIWGRTSLEKGKLPIQLGLWWIHGIFILIAALLF 349


>gi|227357023|ref|ZP_03841394.1| inner membrane protein [Proteus mirabilis ATCC 29906]
 gi|227162826|gb|EEI47786.1| inner membrane protein [Proteus mirabilis ATCC 29906]
          Length = 343

 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 124/343 (36%), Gaps = 19/343 (5%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           + I +  ++++ +          N+++ +    IP +  ++ P    +      + +   
Sbjct: 1   MLIFFSQKLVEILGAAVEGNIPTNLVVSLLWLGIPEMAQLILPLSLFLGLLMTYSKLYVE 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
           +E+ +++  G  +  L++  L L++L S+    +   + P      +Q+   A+   + +
Sbjct: 61  SEITVMNACGIGKKALVQAALLLSLLTSVLAAGNVVWLIPWSSVHQEQVLEDAKANPSLA 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR--DTQTHKIYYAQSGS---IDLDR 198
            L E  F    D   +        N  Q +F+   R    Q   +  A  G    +    
Sbjct: 121 ALMEGQFKMSSDRNMVLYLGSVKGNQFQDVFLAQLRPTQNQRPSVVVADKGYTKELPNGN 180

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNP 258
           Q ++L++G  +  + + +D  I  F  Y        S+    +   + ++ L +      
Sbjct: 181 QVVVLSEGTRYEGTAVLRDFRITDFTDYQAVIGHRESTISRNRVEQKTMNELWH------ 234

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
                      +EFH RLT     VI  L+         +  ++ ++  +  ++ +    
Sbjct: 235 ----STEPESIAEFHWRLTLIFSVVIMALM---VVPLSEVNPRQGRVLSMLPAMLLYLVF 287

Query: 319 FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTKI 361
           F   S +    E+     P++ ++        L ++   +  +
Sbjct: 288 FLLQSSLRSSGEK-GKVDPLIAMWTVNGIYFALALLLNAWDTL 329


>gi|161524005|ref|YP_001579017.1| permease YjgP/YjgQ family protein [Burkholderia multivorans ATCC
           17616]
 gi|189351234|ref|YP_001946862.1| YjgP/YjgQ-like transporter [Burkholderia multivorans ATCC 17616]
 gi|160341434|gb|ABX14520.1| permease YjgP/YjgQ family protein [Burkholderia multivorans ATCC
           17616]
 gi|189335256|dbj|BAG44326.1| YjgP/YjgQ-like transporter [Burkholderia multivorans ATCC 17616]
          Length = 382

 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/380 (11%), Positives = 106/380 (27%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++                ++ +    P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLAPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS---------------K 216
            + I +       K                +L        +PI                 
Sbjct: 181 NVRIYEFDAKFQLKNVRIAQTGRYEPPGHWLLKGVTETELTPIQPIAGQAPDALNPVYRS 240

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
               +              S +++     ++  L      +     +  + Y     ++L
Sbjct: 241 QQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFR-YIQHLRENHQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFAYL--HTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|149196258|ref|ZP_01873313.1| permease YjgP/YjgQ [Lentisphaera araneosa HTCC2155]
 gi|149140519|gb|EDM28917.1| permease YjgP/YjgQ [Lentisphaera araneosa HTCC2155]
          Length = 358

 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 113/352 (32%), Gaps = 5/352 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                YI+R +   F+      +FI ++  +   ++ +     +   ++     LIP   
Sbjct: 4   SILSRYIMRSMLLPFVCCICGFIFIFFIANVQDDLSDMLKLDNT-KDIIIYYFLLIPDKF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    + T    +S+NRN E++ + + G S   L  P+   ++L+ I L++S   +
Sbjct: 63  TYIAPMSLLLATIYCFSSLNRNHEVIAMRSAGLSLTKLSAPIYLFSVLVGISLYLSSQYL 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           EP CR    +L+ +A+             F         +S    NN      +    + 
Sbjct: 123 EPYCRLKTFELNTRAESMDRSHEFHIFTAFDGKQKRKWAVSSDEDNNFSAIQILEYDENN 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI---SKDISIMKFKSYTLQTESANSSTI 238
              +   A SG            +  +   S      K      +    ++ +    S I
Sbjct: 183 NLTREIEALSGEF-NSEIGWNFKNVSIAEFSEDHRIKKIEKHDNYLRNDIKDDPIILSNI 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                  +++ + +   +      +      +  +  +      +I  L+ I  A     
Sbjct: 242 DELKGTPSIAQIKSELNSGRPVDTKRKAFLETRQYSLIFSPFSCLIGVLLGIPLATSSQR 301

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                        + + + +   F+ +       P     +  F+F    +F
Sbjct: 302 SPGMSAASRAIGIMLVYYIINSAFTNLGRNDILPPMMAAGIGTFIFISFGLF 353


>gi|115352568|ref|YP_774407.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria AMMD]
 gi|172061427|ref|YP_001809079.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MC40-6]
 gi|115282556|gb|ABI88073.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria AMMD]
 gi|171993944|gb|ACB64863.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MC40-6]
          Length = 382

 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/380 (11%), Positives = 107/380 (28%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFIFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGIPLVIITYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++                ++ +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGNLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS---------------K 216
            + I +       +                +L        +PI                 
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQTGRYEPPGHWLLTGVTETELTPIKPISGAPADALNPVYRS 240

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
               +              S +++     +L  L      +     +  + Y     ++L
Sbjct: 241 QQVTLPEYRLRSDLTPQILSVLLVSPERMSLINLFR-YIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFAYL--HTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|326565139|gb|EGE15330.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis 103P14B1]
 gi|326572842|gb|EGE22827.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis CO72]
 gi|326574664|gb|EGE24600.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis 101P30B1]
          Length = 369

 Score = 82.4 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/373 (11%), Positives = 107/373 (28%), Gaps = 18/373 (4%)

Query: 1   MK--SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIP 58
           MK      Y++R    +   + + +  +  V   L  ++ +S  T +L   L    Y  P
Sbjct: 1   MKSWILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNISE-TYTLTDALLFILYRSP 59

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             L    P    +     L  +  ++EL+++   G S   ++   +  A++         
Sbjct: 60  YFLVQFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGVN 119

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
             + P        + A        +           D   +    Y  N    G      
Sbjct: 120 QFVLPTANQYATAIRADTIYDKLITIDGYWSVNHDGDSQDVVYISYADNEGGLGEVKRYQ 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-----------DISIMKFKSYT 227
                          + L +   ++N  +      +S              +  + K  T
Sbjct: 180 LKDGQLIAALKAKSGVYLPQSDDVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKILT 239

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
           L     +   +  +  D +LS L   +     ++      +   F ++L      +   L
Sbjct: 240 LPIAPTDVYLLTKEPEDLSLSSLY-AHRQLMAHQGTRSLRHELAFWQKLLSPFAVLSLVL 298

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
           ++          R +     + ++L       +                 ++ L    +S
Sbjct: 299 VASSFVFGSL--RSQGLGLRVVLALLTGLLFSYLTDLTGFVALATGLSPLLMALVPIVLS 356

Query: 348 SI-FLLMIKKKYT 359
           ++  + ++ +K +
Sbjct: 357 AMAGMYLLNRKSS 369


>gi|319778586|ref|YP_004129499.1| Permease-like protein [Taylorella equigenitalis MCE9]
 gi|317108610|gb|ADU91356.1| Permease-like protein [Taylorella equigenitalis MCE9]
          Length = 384

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/378 (12%), Positives = 130/378 (34%), Gaps = 20/378 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+    +   I R+  +  + ++ +    + ++  + ++    ++ ++L +  + +PT 
Sbjct: 1   MKTARKLLSHEIYRTCSLVLVVLLGLFTFFETIEEFDKINEI-YTVWVMLALQAFQLPTR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    + +   L ++ +  EL+I+  +G S   L+  + ++A+ + +   +   +
Sbjct: 60  LYDILPIGLLIGSVVALANLAQRNELVILRVSGLSSRKLLFMLWWIALPIIVLATLLSEV 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS-----KYNPNNTLQGIFI 175
           I P     +  ++       +        F         ++      K +       +F 
Sbjct: 120 ITPWADQKVSAINMAVLGKKSNQLNSGYWFREPVSSNTYRVINLTNLKNDGEIENIKVFE 179

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS------------KDISIMKF 223
             S D Q  ++  A++G+++ +   +      V                    + + ++ 
Sbjct: 180 YSSIDNQFKRLLSAETGTLENNELELTNVVQTVSLVDINKILNDEHDPVLKVSNSNKLEK 239

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
                           LK +  +   LL+   +           +     ++L+     +
Sbjct: 240 IKLKTSLTQDRLLATELKPDRMSTLKLLD-YIDYLKENQLEHNKHVVALWRKLSYPFALI 298

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLF 342
           +   ++      +           I I L I F +    S  +  + + P +I   L   
Sbjct: 299 VMITLATPLGFIQTRKGGVGAKIFIGILLGIVFFMVNQLSLNMGMLSKLPAWITATLPNI 358

Query: 343 LFCISSIFLLMIKKKYTK 360
           +  I +I+ L + ++  K
Sbjct: 359 IAMILAIYALYMIERKPK 376


>gi|218551558|ref|YP_002385350.1| hypothetical protein EFER_4343 [Escherichia fergusonii ATCC 35469]
 gi|218359100|emb|CAQ91761.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia fergusonii ATCC 35469]
 gi|324112114|gb|EGC06092.1| inner membrane protein yjgP [Escherichia fergusonii B253]
          Length = 366

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 126/356 (35%), Gaps = 17/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   I+     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKGVLVKAAMILALFTGIVAAINVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSAVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  +++ L N +           +  R+E + RLT      +  L+ +  +    
Sbjct: 242 DPNDTDQMDMTTLWNTD----------SDRARAELNWRLTLIFTVFMMALMVVPLSVVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              +   + P  +   + F +         K + +P     ++       ++ + +
Sbjct: 292 RQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLW--MWTVNLIYLALAIAL 345


>gi|319784424|ref|YP_004143900.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170312|gb|ADV13850.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 360

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/354 (11%), Positives = 93/354 (26%), Gaps = 13/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y         +   + ++ + ++I   +     +     +    + ISG  +P ++
Sbjct: 4   TLGRYFFFRYVTITIWFFIGLLALVFLIDFTELSGRTTGLPGFTYGTAVAISGLRMPMIM 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF----IS 117
               PF         L S+NR  EL+I  + G S    + P    A+L  +         
Sbjct: 64  LQTVPFVGLFSAMATLVSLNRRYELVIARSAGVSAWQFLLPCCIGALLFGVLSVGVINPL 123

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
                        QL +     ++              D  I               +  
Sbjct: 124 AAHAFSWSEQIETQLRSGKSNTVSADAAPWIRQKTSSGDTIIGARAILNQGLEMADVVFF 183

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D Q + +    +    L      L D +  +    +  I            +      
Sbjct: 184 ILDPQGNIVERKDAARAFLRDGYWELQDVKTFQ----NGTIQASATDRVPTNLKPEFVQE 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            + +        L                 +  +F   +      V   LI+  A     
Sbjct: 240 RLARPETIPFYDL-PGKIEVARSFGLKANAFAMQFDSLVALPFLLVAMTLIA--ATVSMR 296

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             R  +    I   +   F ++   S ++       +   ++  ++  + ++F 
Sbjct: 297 FARMGQSATMILGGIIAGFLLYVV-SVLVKAFGVAGFVPTVVAAWVPVMVAMFF 349


>gi|146329237|ref|YP_001210036.1| hypothetical protein DNO_1152 [Dichelobacter nodosus VCS1703A]
 gi|146232707|gb|ABQ13685.1| conserved hypothetical membrane protein [Dichelobacter nodosus
           VCS1703A]
          Length = 349

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 134/357 (37%), Gaps = 12/357 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F  Y++R I   FL   + ++ I    +    ++     + SL  + ++  +    ++ 
Sbjct: 5   IFYRYMMREISALFLAITMILLTIIISFRFSSLLSRALDGSVSLAAIGQLLIFQTANIVV 64

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F + +   L+ +  + E+  +   G S+  L++P+L+L + L++ L I+   + 
Sbjct: 65  ILLPVAFILASVMTLSRLYGDCEINALFAGGCSKKHLMQPILYLVLPLAVILVINTLYLL 124

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       QL A+++    +S+   N F  L+    +       N      FI+   D  
Sbjct: 125 PHVFERWDQLMAQSRQEALYSFFTPNQFQHLNAHNTLYTGDKINNGF--QPFIIIQNDNN 182

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
            + + +++ G I  ++    L+       +  ++      F+            ++ L  
Sbjct: 183 EYSMLWSKRGEIQKNQPEHFLH------LTQGNRAAWRDDFQPQNCLFSQFAHGSLHLSQ 236

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  +    L         +      +R+EF KRL   L  VIF     + A  R    + 
Sbjct: 237 SPPSAQQRLRSIATGALNQSL---AHRAEFQKRLNPALAVVIFSFAVPLLAHTRPRQGRY 293

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
           +++ P FI   I   +      +  +  Q P+ I    +       I +   + +  
Sbjct: 294 QRLLPAFILFGIYINLLDIALKMFSR-GQIPFLIGGWGIHFAAAFIIAIYWQRARKP 349


>gi|228472915|ref|ZP_04057672.1| permease [Capnocytophaga gingivalis ATCC 33624]
 gi|228275497|gb|EEK14274.1| permease [Capnocytophaga gingivalis ATCC 33624]
          Length = 477

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 106/295 (35%), Gaps = 20/295 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL     +F+ S L I+ I     I   ++ +     S  +++K    ++P +
Sbjct: 1   MKILDRYILSRFIFNFISSFLIIMVIFIFQTIWLYVDELVGRGLSFLVVIKFIALMLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ P    + +   L +   + EL  +  +G S +   + ++   +LLSI +F + N 
Sbjct: 61  IPLILPLTVVLSSIMTLGAFGESYELAAMKASGVSLLKATRMLILFMVLLSIGVFFTFNN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS-- 178
           ++P        L    +       + + +F  + D       K   N       ++    
Sbjct: 121 LQPWSNRKFVALRDSIKNKQPSLAISQGIFNNVQDFSIKVAKKTGENEQYLHDIVIHKVG 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAI-----ILNDGEVHRKSPISKDISIMKFKSYTLQT--- 230
            +  T  +  A++G +   ++       IL DG  +      K      F     +T   
Sbjct: 181 INGDTRTVIKAKNGELSGHKKGSDVLQLILKDGSYYEDVYNDKSDITFPFVKAKFETHVL 240

Query: 231 ----------ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
                      + + +         N+S L +   +      +  + +   F++R
Sbjct: 241 NIDISALNADITYDENAERDYYKTMNISQLSHALDSIVQNYQQETKDFGENFYRR 295



 Score = 43.8 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 45/105 (42%), Gaps = 6/105 (5%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           L+ N +N  Y+ +L+  YR     ++   +   +   ++   A   A++R+     P+ +
Sbjct: 349 LDNNKDNVEYQQKLINVYRLTLSDKIALAITCFVLFFVA---APLGAIIRKGGIGMPLVV 405

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLM 353
           ++ + F  ++    +   +  N    P +  ++  F +  + + +
Sbjct: 406 AIGL-FLSYYFSGLLTKNMATNGNINPYIAPWVPTFFLLPLGVYL 449


>gi|221199306|ref|ZP_03572350.1| putative membrane protein [Burkholderia multivorans CGD2M]
 gi|221205792|ref|ZP_03578807.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221174630|gb|EEE07062.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221180591|gb|EEE12994.1| putative membrane protein [Burkholderia multivorans CGD2M]
          Length = 382

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/380 (11%), Positives = 106/380 (27%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++                ++ +    P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLAPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI---------------SK 216
            + I +       K                +L        +PI                 
Sbjct: 181 NVRIYEFDAKFQLKNVRIAQTGRYEPPGHWLLKGVTETELTPIRPIAGQAPDALNPVYRS 240

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
               +              S +++     ++  L      +     +  + Y     ++L
Sbjct: 241 QQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFR-YIQHLRENHQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFAYL--HTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|195940457|ref|ZP_03085839.1| permease YjgP/YjgQ family protein [Escherichia coli O157:H7 str.
           EC4024]
          Length = 366

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 133/375 (35%), Gaps = 31/375 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  D   +   +    N    +F+   R   
Sbjct: 122 PTSSRHQDEVLAEAKANPGLAALAQGQFQQATDGNSVLFIESVDGNRFNDVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGQLAQRKDGSQVVTLNKGTRFEGTAMLRDFRITDFQNYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   ++  L+N + +            R+E H R+T      +  L+         
Sbjct: 242 DPTDTEQMDMRTLMNTDTD----------RARAELHWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF------LFCISSIFL 351
           +  ++ ++  +  ++ +    F   + I     +     P+++ +      L     + L
Sbjct: 289 VNPRQGRVLSMLPAMLLYLVFFLLQTSIKSNGGK-GKIDPMIWTWVVNGLYLLLAVGLNL 347

Query: 352 L------MIKKKYTK 360
                   ++ ++T+
Sbjct: 348 WDTVPVRRLRARFTR 362


>gi|313680974|ref|YP_004058713.1| permease yjgp/yjgq family protein [Oceanithermus profundus DSM
           14977]
 gi|313153689|gb|ADR37540.1| permease YjgP/YjgQ family protein [Oceanithermus profundus DSM
           14977]
          Length = 377

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/382 (14%), Positives = 103/382 (26%), Gaps = 33/382 (8%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YILR +    L+S L  V +            +      +  +L   GY +P VL
Sbjct: 3   TILDRYILREVVPVLLVSALLYVAVFLFGFFYVGSRWL--DGAPVLKVLTWLGYHVPGVL 60

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V P             M     +L     G S + L++PVL L  LL+ F       +
Sbjct: 61  VQVLPMAVVSAVVIPFGRMATEGAVLATQAGGVSLVRLLRPVLLLGFLLAGFSLYLSENV 120

Query: 122 EPKCRSTIKQLSAKAQLA---------------------LTFSYLEENLFFRLDDDLYIK 160
            P+  + ++                                  Y   +           K
Sbjct: 121 VPESNARVRGYWYDELTTPGHGLYRLRGKTVPLGNGIELFFSGYDWAHRAMTGVRLQLWK 180

Query: 161 ISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDI 218
             +       +G++         ++IY     +ID   +     L          +S   
Sbjct: 181 DRQVTVIFADRGVYQGRDLKLTGYRIYTVDYAAIDGLLNASDAQLPARLQQVFKNVSVPR 240

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFL--LNPNPNNPNYRPELLETYRSEFHKRL 276
           S     +  +      +          +   L        +P   P         FH +L
Sbjct: 241 SEEASTTIKVGLSRDEALANFADPLAADTLSLSEAWQRYTDPKLAPADRTDAGLAFHSKL 300

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
              L  V+  LIS+  A              + I++      ++    +   +       
Sbjct: 301 ALPLANVVLVLISLPFAVYYGRSPGLSMGMSVMIAVG-----YYLVFLLARSMGGLGMLP 355

Query: 337 PILYLFLF-CISSIFLLMIKKK 357
           P L  +    + +     + ++
Sbjct: 356 PALAAWGANLLFAFVGWRLIRR 377


>gi|51245020|ref|YP_064904.1| hypothetical protein DP1168 [Desulfotalea psychrophila LSv54]
 gi|50876057|emb|CAG35897.1| unknown protein [Desulfotalea psychrophila LSv54]
          Length = 362

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 126/363 (34%), Gaps = 8/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+L    + FL      + +  +I   ++ +  + + + L++++K   + IP +
Sbjct: 1   MHLLNRYLLGQFFKFFLTVAAGFIALYLLIDFFEKFDNFTEAGKPLSVVIKYFLFSIPAI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLS-IFLFISEN 119
           +  + P    +     L  +N + EL  +   G     +I+P++     ++ +F+  ++ 
Sbjct: 61  VDQLGPILILLSGVISLGVLNSSNELTALKAGGLPLRAIIRPIIIGGGAVTLLFMASAQW 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--D 177
           I+      T        Q       +  N ++    + +   +  N    L   F     
Sbjct: 121 ILPSTVAVTNDIWIEGVQGKTPVGIVRNNRYYYHGQEGFYSFAWKNNKEYLFANFSYSSW 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGE-VHRKSPISKDISIMKFKSYTLQTESANSS 236
            ++    ++  A S S D  + + +L  G    ++S  S   +    + +          
Sbjct: 181 DKEYGLKEMISATSASWDAKQNSWLLKGGVLQQQESRGSYTTTTFTSRKFHFPETPEAFR 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T     ++++LS LL    NN        E     F  R++  L  +   L   +     
Sbjct: 241 TPQHAESERSLSALLKGALNNQIA--FEAEEAWGLFLGRISYILLGLPLLL-LGLPILLL 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL-LMIK 355
           +  +  K +     +        W     +  +     + P L  FL     I L L + 
Sbjct: 298 SYQKWGKDLSIAIPASCTMAFSAWAVWGALQSLAIAGKFSPWLAAFLIHAIFITLGLYLL 357

Query: 356 KKY 358
           +++
Sbjct: 358 RRF 360


>gi|254374090|ref|ZP_04989572.1| permease YjgP/YjgQ family protein [Francisella novicida GA99-3548]
 gi|151571810|gb|EDN37464.1| permease YjgP/YjgQ family protein [Francisella novicida GA99-3548]
          Length = 360

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 123/358 (34%), Gaps = 12/358 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 2   ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYSQGLGIDSIVKFVILTIPENVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  L   + L+I   I+   + 
Sbjct: 62  LVAPIAIFLAIVICFGKYFANNEMFVTLAGGITWMQIVKNTLKPVVALTIITLITVMYLN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  + T+    A        S + +    +  D   I I   + N         ++    
Sbjct: 122 PLSKQTLDIYKASLSAKALLSSITDQKIIKAPDGKIIYIGNKSGNTLSDVFLYQNTPQDG 181

Query: 183 THKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +K+  A +  I  D+ A      +  ++ K+  + + S    K         +      
Sbjct: 182 EYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYTIFDNSDRDYNH 241

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D+     L  N N+          Y++EF  R+   +  ++    S++A     L  
Sbjct: 242 DRVDRLYMHTLIENFNDKA----NGTAYKAEFFGRINNAISVIVS---SLLALALCRLRP 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
           ++ K   +  S+ +   ++   +  I+ +  N      +  +L     +   +  I+K
Sbjct: 295 RQNKYAKLLPSVVV-LAIYLCTNMFINTLMANGSVPVWIGFWLPHIFFTIFAVRTIRK 351


>gi|209749454|gb|ACI73034.1| hypothetical protein ECs5238 [Escherichia coli]
          Length = 366

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 132/361 (36%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+   + + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPSMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E + R+T      +  L+         
Sbjct: 242 DPNDTDQMDMRTLWNTDTD----------RARAELNWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + +     +     P L+++   +  + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGK-GKLDPTLWMWTVNLIYLALAIVLNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|156935580|ref|YP_001439496.1| hypothetical protein ESA_03444 [Cronobacter sakazakii ATCC BAA-894]
 gi|156935598|ref|YP_001439514.1| hypothetical protein ESA_03463 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533834|gb|ABU78660.1| hypothetical protein ESA_03444 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533852|gb|ABU78678.1| hypothetical protein ESA_03463 [Cronobacter sakazakii ATCC BAA-894]
          Length = 370

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 126/345 (36%), Gaps = 19/345 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+L  I   ++     
Sbjct: 62  LILPLSLFLALLMTLGRLYTESEITVMHACGLSKAVLVKAAMVLALLTGIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  D   +   +    +    +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATDGNAVLFIESVNGSKFNDVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  FK Y         + 
Sbjct: 182 NARPSVVVADSGELSQRKDGSQVVTLNQGTRFEGTAMLRDFRITDFKDYKAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A   ++  L   N  +           R+EFH RLT     ++  L+         
Sbjct: 242 DPDDAEQMDMKTLWQANSKSA----------RAEFHWRLTLVFAVIVMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           +  ++ ++  +  ++ +    F   + +     +     P+++++
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQTSLRSNGAK-GKLDPLIWMW 332


>gi|86131956|ref|ZP_01050553.1| predicted permease YjgP/YjgQ family [Dokdonia donghaensis MED134]
 gi|85817778|gb|EAQ38952.1| predicted permease YjgP/YjgQ family [Dokdonia donghaensis MED134]
          Length = 552

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 74/188 (39%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI     ++FL     ++FI  +  +   I  ++      +++LK   + +P++
Sbjct: 1   MKILDRYIFFTFVKTFLSIFTILMFIFVLQSVWLYIQELAGRDLDFDVILKFLLFAMPSL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P    + +     +   N E   + +TG S    +K V+F  I L I  F+  N 
Sbjct: 61  VTLVLPLSVLLTSIMTFGNFAENYEFAAMKSTGISLQRAMKSVIFFIIFLGIASFLFANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +   + L            +    F  + DD  +++++   +       +V  + 
Sbjct: 121 VIPASQYEFRNLRNNIGKMKPAMLIRSGQFNEVGDDFNMRVAEKYGDRDQYLRDVVIHQK 180

Query: 181 TQTHKIYY 188
            +     Y
Sbjct: 181 EKGRLGNY 188



 Score = 45.8 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 48/149 (32%), Gaps = 4/149 (2%)

Query: 209 HRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETY 268
           ++ +   +   I +      + +       + K+N  N    +           + L  +
Sbjct: 307 YQGNVKQQSAEIKEAILDNYEIKDRVRILEIAKSNISNTIADIENRKKILKIDVKRLSKF 366

Query: 269 RSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
               H++       ++   +    A   A++R+     PI I + +     +   +  + 
Sbjct: 367 EISLHEKYVLGFSCILLFFVG---APLGAIIRKGGLGLPIVIGVVLFLTFHFIGIFAKNS 423

Query: 329 IEQNPYYIPIL-YLFLFCISSIFLLMIKK 356
            E N     I  +L  F +  + + +  +
Sbjct: 424 AEDNSISPFIASWLSTFILFPLGVYLTYR 452


>gi|296104924|ref|YP_003615070.1| permease YjgP/YjgQ family protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059383|gb|ADF64121.1| permease YjgP/YjgQ family protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 359

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 130/365 (35%), Gaps = 23/365 (6%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +R   +S L     ++ I +  ++++ +          N++L + G  IP +  ++ P  
Sbjct: 1   MRETLKSQLAILFILLLIFFCQKLVKILGAAVDGEIPTNLVLSLLGLGIPEMAQLILPLS 60

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     P     
Sbjct: 61  LFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILALFTGIVAAVNVMWAGPMSSRH 120

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKI 186
             ++ A+A+     + L +  F +  D   +   +    +    +F+   R        +
Sbjct: 121 QDEVLAEAKANPGMAALAQGQFQQATDGNSVLFIESVDGSKFNDVFLAQLRTKGNARPSV 180

Query: 187 YYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
             A SG +       Q + LN G     + + +D  I  F++Y         +       
Sbjct: 181 VVADSGQLAQRKDGSQVVTLNKGTRFEGTAMLRDFRITDFQNYQAIIGHQAVALDPTDTE 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++  L N + +            R+EFH R+T      +  LI +  +       +  
Sbjct: 241 QMDMRTLWNTDTD----------RARAEFHWRITLVFTVFMMALIVVPLSVVNPRQGRVL 290

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM--------IK 355
            + P  +   I F +         K + +P         L+ + ++ L +        I+
Sbjct: 291 SMLPAMLLYLIYFLLQTSIRSNGAKGKLDPMVWTWFVNSLYILLALGLNLWDTVPVRRIR 350

Query: 356 KKYTK 360
            ++++
Sbjct: 351 ARFSR 355


>gi|162148705|ref|YP_001603166.1| permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545528|ref|YP_002277757.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787282|emb|CAP56876.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533205|gb|ACI53142.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 377

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/361 (12%), Positives = 106/361 (29%), Gaps = 13/361 (3%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+ R +    L +   ++ +  ++ +L+++  +    + L   L       P +L  
Sbjct: 17  LTRYLTRELAGRILTAGAILLALMEILALLEQLTPILERHQGLRGALYFMALHAPLLLGS 76

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P    + +  +L  M   +E+ I+   G +   L++ +L   + L +   + ++ + P
Sbjct: 77  IFPLAVLIGSLVMLVHMTTASEIAILRAAGLTTPALVRLMLPAVLGLGLAATLIDDQVTP 136

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +    + +                  F+       + +          G+  V  RD   
Sbjct: 137 RAELALARWWNLTDPHPEAGR----SFWFRSGTTLVDVGYVAQGGRELGMVDVYGRDGSG 192

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
                A  G            D       P     +  +  +              L+ +
Sbjct: 193 RLSRVAHLGGAHYANGEWTGTDARGLTVLPSEVIPAPAEPAAEAAGPMRGLGWPAGLRPD 252

Query: 244 DQ-----NLSFL----LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           D      +   L    +     +     +     R+    R    L  ++  L++I    
Sbjct: 253 DMVRLSMDTPPLAASTMVAMMRDRAPSTQPPAALRTALLGRALTPLTFMVMLLLAIPVVY 312

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                  R  +    +   + F VF G    +      P     L   +    ++  LM+
Sbjct: 313 IPPRSGTRSWLPVWCLGAGLLFVVFQGLLQALGNAGSLPALAATLPGIVIFTFAVSALML 372

Query: 355 K 355
           +
Sbjct: 373 R 373


>gi|49474100|ref|YP_032142.1| hypothetical protein BQ04620 [Bartonella quintana str. Toulouse]
 gi|49239604|emb|CAF25961.1| Hypothetical transmembrane protein [Bartonella quintana str.
           Toulouse]
          Length = 364

 Score = 82.0 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 105/356 (29%), Gaps = 14/356 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVS-SSTESLNILLKISGYLIPTVL 61
           +   Y      +        I  +A++I   +  + +S   + +      IS   IP ++
Sbjct: 5   TLGRYFFVRYLKMTCYFFGSIFVLAFLIDFTENSSRLSYLPSYTAKDAFLISVLRIPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF        +L S+NR  EL++  + G S    + P  F A L  +F  +  N +
Sbjct: 65  QQLIPFIALFSAMAMLISLNRKCELVVTRSIGVSAWQFLMPACFGAFLFGLFSILLVNPL 124

Query: 122 EPKCRSTIKQLSAKAQL------ALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
                S  ++++ + +             +         D   I                
Sbjct: 125 AAWGFSQAEKMTTEWRSNNVLTSFHNTRIIPWLTQRTNSDRTTIGAKSITDQGLSLIDAT 184

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
               +       +  +    L     +L +G +++     +  +  + K+     +    
Sbjct: 185 FVQYNDNATVKNWINTRKATLTNGVWLLTNGTIYKIGHPPEKFTEFQIKT---NLKPEFL 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +  +          L                 +       +      +   LI+   +  
Sbjct: 242 TERLANPATIPFYQL-PKKIMIARSFGYSANNFDMYLQSLIALPALLIAMTLIAATVSL- 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               R  +    IF  +   F ++   S ++       Y  PI+  +   I ++FL
Sbjct: 300 -NFTRFGQSGTLIFGGVIAGFTLY-VISVLVQAFGNAGYMPPIIAAWTPVIIALFL 353


>gi|33591556|ref|NP_879200.1| hypothetical protein BP0325 [Bordetella pertussis Tohama I]
 gi|33571198|emb|CAE40702.1| putative membrane protein [Bordetella pertussis Tohama I]
 gi|332380956|gb|AEE65803.1| hypothetical protein BPTD_0320 [Bordetella pertussis CS]
          Length = 392

 Score = 82.0 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/371 (12%), Positives = 115/371 (30%), Gaps = 24/371 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   Y+ R I RS  +  L ++ +     ++  ++ V     S+  L  +    +PT 
Sbjct: 1   MRTARRYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGDK-FSMLALFYMQALALPTR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  + +  EL+I+  +G S + L+  +  + I L I   +    
Sbjct: 60  LYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLGMLWVITIPLMIGATLLSEF 119

Query: 121 IEPKCRSTIKQLSAKAQLA----LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           + P       +     +         S          +    I I     +  ++ + + 
Sbjct: 120 VTPAAEIKSGEADLTFRGKTGGGRLNSGYWFKEPTPQNGTRIINIKTLLADGQVKDVTLY 179

Query: 177 DSRDT-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKS------------PISKDISIMKF 223
           + R   +   ++ A +G         +L D    R              P      + K 
Sbjct: 180 EFRSDLEMTALWTAPNGRFSRGDL--VLTDVSETRIDEHAPSALADAKQPKEPPARVTKV 237

Query: 224 KSYTLQTESANSSTI-VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
               L T  +    +  +   ++  +  L        +     +       ++L      
Sbjct: 238 PELKLDTTLSPERLLARVLTPERMSALTLVDYIEYLRHNQLQYDRQVVALWRKLVYPFTL 297

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           ++   I+          R+      +FI + +  G F   + +   +     + P +   
Sbjct: 298 LVMITIAAPIGFM--QTRRGGVGAKVFIGILLGVGFF-MLNQLALNVGMLSRWPPWITAL 354

Query: 343 LFCISSIFLLM 353
              + ++ L  
Sbjct: 355 GPNLGALLLAF 365


>gi|88800548|ref|ZP_01116110.1| predicted Permease [Reinekea sp. MED297]
 gi|88776693|gb|EAR07906.1| predicted Permease [Reinekea sp. MED297]
          Length = 350

 Score = 82.0 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 122/359 (33%), Gaps = 18/359 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   Y+   I + F+   L ++ +    +I   +  + +   S N L  + G+ +P +L 
Sbjct: 2   TLYRYLYGQIMKPFVFMTLVLLILLIATEISDTLTKILTGQFSDNALWVVIGFQVPILLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P  F +     L  +++++E  I+   G S   L++ +L  A L ++ L ++ N   
Sbjct: 62  EILPAAFFLACLTTLHRLSQDSERAILHAIGISDGDLLRFLLVFAALPAMLLVLALNHYI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                   +L    QL    + + +   F     +         N+  Q +  V +    
Sbjct: 122 TPKAQENLELYVTEQLNRPITDIIDANSFYNIGAINATFYAARNNSQTQSLEDVFTIAKS 181

Query: 183 THKIYYAQSGSID----LDRQAIILNDGEVHRKSPISKD-ISIMKFKSYTLQTESANSST 237
                   +  +      + Q     +GE  + S    + +   +F    L+ E   +++
Sbjct: 182 QSSYTVTAAKEVRTQGAENAQYFQFFEGEQTQFSFDESEPLQTQRFGMMQLRIEEDGNAS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              + N      L      +                 R    L+  +F + ++V      
Sbjct: 242 PWQRRNALTSFELAKSEDRHDQLT----------LISRFATSLYLPLFCIWAVVLT---R 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              +  K+  + + + +     + +  +   + ++   I     + F +  +  L+  +
Sbjct: 289 FKPRSAKVGAMALGIVLYILTNFAYRTLHGAVGRSDLSILFQPWWFFVVLGVIALITLR 347


>gi|15804853|ref|NP_290894.1| hypothetical protein Z5873 [Escherichia coli O157:H7 EDL933]
 gi|15834492|ref|NP_313265.1| hypothetical protein ECs5238 [Escherichia coli O157:H7 str. Sakai]
 gi|16132083|ref|NP_418682.1| lipopolysaccharide export ABC permease of the LptBFGC export
           complex [Escherichia coli str. K-12 substr. MG1655]
 gi|26251170|ref|NP_757210.1| hypothetical protein c5362 [Escherichia coli CFT073]
 gi|30065452|ref|NP_839623.1| hypothetical protein S4489 [Shigella flexneri 2a str. 2457T]
 gi|56480551|ref|NP_709940.2| hypothetical protein SF4228 [Shigella flexneri 2a str. 301]
 gi|82546486|ref|YP_410433.1| hypothetical protein SBO_4179 [Shigella boydii Sb227]
 gi|89110977|ref|AP_004757.1| conserved inner membrane protein [Escherichia coli str. K-12
           substr. W3110]
 gi|91213817|ref|YP_543803.1| hypothetical protein UTI89_C4868 [Escherichia coli UTI89]
 gi|110644620|ref|YP_672350.1| putative membrane protein YjgP [Escherichia coli 536]
 gi|117626605|ref|YP_859928.1| hypothetical protein APECO1_2133 [Escherichia coli APEC O1]
 gi|157163736|ref|YP_001461054.1| putative permease [Escherichia coli HS]
 gi|168749567|ref|ZP_02774589.1| putative permease [Escherichia coli O157:H7 str. EC4113]
 gi|168754843|ref|ZP_02779850.1| putative permease [Escherichia coli O157:H7 str. EC4401]
 gi|168760516|ref|ZP_02785523.1| putative permease [Escherichia coli O157:H7 str. EC4501]
 gi|168766552|ref|ZP_02791559.1| putative permease, YjgP/YjgQ family [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774017|ref|ZP_02799024.1| putative permease [Escherichia coli O157:H7 str. EC4196]
 gi|168782788|ref|ZP_02807795.1| putative permease [Escherichia coli O157:H7 str. EC4076]
 gi|168784911|ref|ZP_02809918.1| putative permease, YjgP/YjgQ family [Escherichia coli O157:H7 str.
           EC869]
 gi|168797841|ref|ZP_02822848.1| putative permease [Escherichia coli O157:H7 str. EC508]
 gi|170021731|ref|YP_001726685.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|170083700|ref|YP_001733020.1| inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
 gi|170681521|ref|YP_001746665.1| putative permease [Escherichia coli SMS-3-5]
 gi|191170651|ref|ZP_03032203.1| putative permease [Escherichia coli F11]
 gi|193063666|ref|ZP_03044754.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
 gi|193069837|ref|ZP_03050787.1| putative permease [Escherichia coli E110019]
 gi|195937287|ref|ZP_03082669.1| inner membrane protein [Escherichia coli O157:H7 str. EC4024]
 gi|208807252|ref|ZP_03249589.1| putative permease [Escherichia coli O157:H7 str. EC4206]
 gi|208812743|ref|ZP_03254072.1| putative permease [Escherichia coli O157:H7 str. EC4045]
 gi|208819114|ref|ZP_03259434.1| putative permease [Escherichia coli O157:H7 str. EC4042]
 gi|209395855|ref|YP_002273806.1| putative permease [Escherichia coli O157:H7 str. EC4115]
 gi|209921758|ref|YP_002295842.1| hypothetical protein ECSE_4567 [Escherichia coli SE11]
 gi|215489603|ref|YP_002332034.1| conserved inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217324429|ref|ZP_03440513.1| putative permease [Escherichia coli O157:H7 str. TW14588]
 gi|218556808|ref|YP_002389722.1| hypothetical protein ECIAI1_4492 [Escherichia coli IAI1]
 gi|218561419|ref|YP_002394332.1| hypothetical protein ECS88_4848 [Escherichia coli S88]
 gi|218698009|ref|YP_002405676.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
 gi|218707867|ref|YP_002415386.1| hypothetical protein ECUMN_4793 [Escherichia coli UMN026]
 gi|227886685|ref|ZP_04004490.1| inner membrane protein [Escherichia coli 83972]
 gi|237703936|ref|ZP_04534417.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|238903362|ref|YP_002929158.1| conserved inner membrane protein [Escherichia coli BW2952]
 gi|253775116|ref|YP_003037947.1| permease YjgP/YjgQ family protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254164186|ref|YP_003047296.1| inner membrane protein [Escherichia coli B str. REL606]
 gi|254796281|ref|YP_003081118.1| inner membrane protein [Escherichia coli O157:H7 str. TW14359]
 gi|256019913|ref|ZP_05433778.1| conserved inner membrane protein [Shigella sp. D9]
 gi|260847092|ref|YP_003224870.1| inner membrane protein [Escherichia coli O103:H2 str. 12009]
 gi|260871013|ref|YP_003237415.1| inner membrane protein [Escherichia coli O111:H- str. 11128]
 gi|261225380|ref|ZP_05939661.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255367|ref|ZP_05947900.1| inner membrane protein [Escherichia coli O157:H7 str. FRIK966]
 gi|291285673|ref|YP_003502491.1| Inner membrane protein yjgP [Escherichia coli O55:H7 str. CB9615]
 gi|293402886|ref|ZP_06646983.1| lipopolysaccharide export system permease lptF [Escherichia coli
           FVEC1412]
 gi|293407981|ref|ZP_06651821.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293417761|ref|ZP_06660383.1| lipopolysaccharide export system permease lptF [Escherichia coli
           B185]
 gi|293476564|ref|ZP_06664972.1| lipopolysaccharide export system permease lptF [Escherichia coli
           B088]
 gi|297519576|ref|ZP_06937962.1| Inner membrane protein yjgP [Escherichia coli OP50]
 gi|298378412|ref|ZP_06988296.1| lipopolysaccharide export system permease lptF [Escherichia coli
           FVEC1302]
 gi|300818514|ref|ZP_07098723.1| putative inner membrane protein [Escherichia coli MS 107-1]
 gi|300821368|ref|ZP_07101516.1| putative inner membrane protein [Escherichia coli MS 119-7]
 gi|300899411|ref|ZP_07117666.1| putative inner membrane protein [Escherichia coli MS 198-1]
 gi|300906109|ref|ZP_07123828.1| putative inner membrane protein [Escherichia coli MS 84-1]
 gi|300923939|ref|ZP_07139949.1| putative inner membrane protein [Escherichia coli MS 182-1]
 gi|300950209|ref|ZP_07164150.1| putative inner membrane protein [Escherichia coli MS 116-1]
 gi|300957116|ref|ZP_07169357.1| putative inner membrane protein [Escherichia coli MS 175-1]
 gi|300972386|ref|ZP_07171919.1| putative inner membrane protein [Escherichia coli MS 45-1]
 gi|300988161|ref|ZP_07178581.1| putative inner membrane protein [Escherichia coli MS 200-1]
 gi|301024383|ref|ZP_07188071.1| putative inner membrane protein [Escherichia coli MS 69-1]
 gi|301050053|ref|ZP_07196965.1| putative inner membrane protein [Escherichia coli MS 185-1]
 gi|301304686|ref|ZP_07210794.1| putative inner membrane protein [Escherichia coli MS 124-1]
 gi|301643391|ref|ZP_07243441.1| putative inner membrane protein [Escherichia coli MS 146-1]
 gi|306815521|ref|ZP_07449670.1| Inner membrane protein yjgP [Escherichia coli NC101]
 gi|307140956|ref|ZP_07500312.1| Inner membrane protein yjgP [Escherichia coli H736]
 gi|309792902|ref|ZP_07687330.1| putative inner membrane protein [Escherichia coli MS 145-7]
 gi|331645010|ref|ZP_08346127.1| inner membrane protein YjgP [Escherichia coli H736]
 gi|331650394|ref|ZP_08351466.1| inner membrane protein YjgP [Escherichia coli M605]
 gi|331656095|ref|ZP_08357083.1| inner membrane protein YjgP [Escherichia coli M718]
 gi|331660842|ref|ZP_08361774.1| inner membrane protein YjgP [Escherichia coli TA206]
 gi|331665930|ref|ZP_08366824.1| inner membrane protein YjgP [Escherichia coli TA143]
 gi|331671402|ref|ZP_08372200.1| inner membrane protein YjgP [Escherichia coli TA280]
 gi|331680399|ref|ZP_08381058.1| inner membrane protein YjgP [Escherichia coli H591]
 gi|331681281|ref|ZP_08381918.1| inner membrane protein YjgP [Escherichia coli H299]
 gi|332281053|ref|ZP_08393466.1| conserved hypothetical protein [Shigella sp. D9]
 gi|84027984|sp|P0AFA0|LPTF_ECO57 RecName: Full=Lipopolysaccharide export system permease protein
           lptF
 gi|84027985|sp|P0AF99|LPTF_ECOL6 RecName: Full=Lipopolysaccharide export system permease protein
           lptF
 gi|84027986|sp|P0AF98|LPTF_ECOLI RecName: Full=Lipopolysaccharide export system permease protein
           lptF
 gi|84027987|sp|P0AFA1|LPTF_SHIFL RecName: Full=Lipopolysaccharide export system permease protein
           lptF
 gi|12519273|gb|AAG59460.1|AE005658_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|26111602|gb|AAN83784.1|AE016771_295 Hypothetical protein yjgP [Escherichia coli CFT073]
 gi|537103|gb|AAA97158.1| ORF_o366 [Escherichia coli str. K-12 substr. MG1655]
 gi|1790712|gb|AAC77218.1| lipopolysaccharide export ABC permease of the LptBFGC export
           complex [Escherichia coli str. K-12 substr. MG1655]
 gi|13364716|dbj|BAB38661.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|30043716|gb|AAP19435.1| hypothetical protein S4489 [Shigella flexneri 2a str. 2457T]
 gi|31323180|gb|AAP43524.1| YjgP [Escherichia coli B]
 gi|56384102|gb|AAN45647.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|81247897|gb|ABB68605.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|85677008|dbj|BAE78258.1| conserved inner membrane protein [Escherichia coli str. K12 substr.
           W3110]
 gi|91075391|gb|ABE10272.1| hypothetical protein UTI89_C4868 [Escherichia coli UTI89]
 gi|110346212|gb|ABG72449.1| putative membrane protein YjgP [Escherichia coli 536]
 gi|115515729|gb|ABJ03804.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|157069416|gb|ABV08671.1| putative permease [Escherichia coli HS]
 gi|169756659|gb|ACA79358.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|169891535|gb|ACB05242.1| conserved inner membrane protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|170519239|gb|ACB17417.1| putative permease [Escherichia coli SMS-3-5]
 gi|187770319|gb|EDU34163.1| putative permease [Escherichia coli O157:H7 str. EC4196]
 gi|188016154|gb|EDU54276.1| putative permease [Escherichia coli O157:H7 str. EC4113]
 gi|188999811|gb|EDU68797.1| putative permease [Escherichia coli O157:H7 str. EC4076]
 gi|189357793|gb|EDU76212.1| putative permease [Escherichia coli O157:H7 str. EC4401]
 gi|189364084|gb|EDU82503.1| putative permease, YjgP/YjgQ family [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368987|gb|EDU87403.1| putative permease [Escherichia coli O157:H7 str. EC4501]
 gi|189374999|gb|EDU93415.1| putative permease, YjgP/YjgQ family [Escherichia coli O157:H7 str.
           EC869]
 gi|189379426|gb|EDU97842.1| putative permease [Escherichia coli O157:H7 str. EC508]
 gi|190908875|gb|EDV68462.1| putative permease [Escherichia coli F11]
 gi|192930653|gb|EDV83259.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
 gi|192956891|gb|EDV87344.1| putative permease [Escherichia coli E110019]
 gi|208727053|gb|EDZ76654.1| putative permease [Escherichia coli O157:H7 str. EC4206]
 gi|208734020|gb|EDZ82707.1| putative permease [Escherichia coli O157:H7 str. EC4045]
 gi|208739237|gb|EDZ86919.1| putative permease [Escherichia coli O157:H7 str. EC4042]
 gi|209157255|gb|ACI34688.1| putative permease [Escherichia coli O157:H7 str. EC4115]
 gi|209749448|gb|ACI73031.1| hypothetical protein ECs5238 [Escherichia coli]
 gi|209749450|gb|ACI73032.1| hypothetical protein ECs5238 [Escherichia coli]
 gi|209749452|gb|ACI73033.1| hypothetical protein ECs5238 [Escherichia coli]
 gi|209749456|gb|ACI73035.1| hypothetical protein ECs5238 [Escherichia coli]
 gi|209915017|dbj|BAG80091.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|215267675|emb|CAS12133.1| conserved inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217320650|gb|EEC29074.1| putative  permease [Escherichia coli O157:H7 str. TW14588]
 gi|218354741|emb|CAV01804.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
 gi|218363577|emb|CAR01234.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI1]
 gi|218368188|emb|CAR05996.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli S88]
 gi|218434964|emb|CAR15905.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli UMN026]
 gi|222036033|emb|CAP78778.1| Inner membrane protein yjgP [Escherichia coli LF82]
 gi|226901848|gb|EEH88107.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227836258|gb|EEJ46724.1| inner membrane protein [Escherichia coli 83972]
 gi|238860249|gb|ACR62247.1| conserved inner membrane protein [Escherichia coli BW2952]
 gi|242379781|emb|CAQ34608.1| LptF, subunit of LptABCFG ABC transporter [Escherichia coli
           BL21(DE3)]
 gi|253326160|gb|ACT30762.1| permease YjgP/YjgQ family protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976089|gb|ACT41760.1| conserved inner membrane protein [Escherichia coli B str. REL606]
 gi|253980245|gb|ACT45915.1| conserved inner membrane protein [Escherichia coli BL21(DE3)]
 gi|254595681|gb|ACT75042.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|257762239|dbj|BAI33736.1| inner membrane protein [Escherichia coli O103:H2 str. 12009]
 gi|257767369|dbj|BAI38864.1| inner membrane protein [Escherichia coli O111:H- str. 11128]
 gi|281181359|dbj|BAI57689.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|281603540|gb|ADA76524.1| hypothetical protein SFxv_4611 [Shigella flexneri 2002017]
 gi|290765546|gb|ADD59507.1| Inner membrane protein yjgP [Escherichia coli O55:H7 str. CB9615]
 gi|291321017|gb|EFE60459.1| lipopolysaccharide export system permease lptF [Escherichia coli
           B088]
 gi|291429801|gb|EFF02815.1| lipopolysaccharide export system permease lptF [Escherichia coli
           FVEC1412]
 gi|291430479|gb|EFF03477.1| lipopolysaccharide export system permease lptF [Escherichia coli
           B185]
 gi|291472232|gb|EFF14714.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294490862|gb|ADE89618.1| putative permease [Escherichia coli IHE3034]
 gi|298280746|gb|EFI22247.1| lipopolysaccharide export system permease lptF [Escherichia coli
           FVEC1302]
 gi|300298211|gb|EFJ54596.1| putative inner membrane protein [Escherichia coli MS 185-1]
 gi|300305971|gb|EFJ60491.1| putative inner membrane protein [Escherichia coli MS 200-1]
 gi|300316134|gb|EFJ65918.1| putative inner membrane protein [Escherichia coli MS 175-1]
 gi|300356989|gb|EFJ72859.1| putative inner membrane protein [Escherichia coli MS 198-1]
 gi|300396609|gb|EFJ80147.1| putative inner membrane protein [Escherichia coli MS 69-1]
 gi|300402052|gb|EFJ85590.1| putative inner membrane protein [Escherichia coli MS 84-1]
 gi|300410965|gb|EFJ94503.1| putative inner membrane protein [Escherichia coli MS 45-1]
 gi|300419817|gb|EFK03128.1| putative inner membrane protein [Escherichia coli MS 182-1]
 gi|300450449|gb|EFK14069.1| putative inner membrane protein [Escherichia coli MS 116-1]
 gi|300526257|gb|EFK47326.1| putative inner membrane protein [Escherichia coli MS 119-7]
 gi|300528918|gb|EFK49980.1| putative inner membrane protein [Escherichia coli MS 107-1]
 gi|300840036|gb|EFK67796.1| putative inner membrane protein [Escherichia coli MS 124-1]
 gi|301078221|gb|EFK93027.1| putative inner membrane protein [Escherichia coli MS 146-1]
 gi|305851183|gb|EFM51638.1| Inner membrane protein yjgP [Escherichia coli NC101]
 gi|307556431|gb|ADN49206.1| putative membrane protein YjgP [Escherichia coli ABU 83972]
 gi|307629337|gb|ADN73641.1| Inner membrane protein yjgP [Escherichia coli UM146]
 gi|308123188|gb|EFO60450.1| putative inner membrane protein [Escherichia coli MS 145-7]
 gi|309704765|emb|CBJ04116.1| putative permease [Escherichia coli ETEC H10407]
 gi|312948914|gb|ADR29741.1| inner membrane protein [Escherichia coli O83:H1 str. NRG 857C]
 gi|315255620|gb|EFU35588.1| putative inner membrane protein [Escherichia coli MS 85-1]
 gi|315288386|gb|EFU47784.1| putative inner membrane protein [Escherichia coli MS 110-3]
 gi|315293628|gb|EFU52980.1| putative inner membrane protein [Escherichia coli MS 153-1]
 gi|315298978|gb|EFU58232.1| putative inner membrane protein [Escherichia coli MS 16-3]
 gi|320639018|gb|EFX08664.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
           O157:H7 str. G5101]
 gi|320644388|gb|EFX13453.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
           O157:H- str. 493-89]
 gi|320649705|gb|EFX18229.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
           O157:H- str. H 2687]
 gi|320655102|gb|EFX23063.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660608|gb|EFX28069.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665535|gb|EFX32581.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323380352|gb|ADX52620.1| permease YjgP/YjgQ family protein [Escherichia coli KO11]
 gi|323935383|gb|EGB31731.1| inner membrane protein yjgP [Escherichia coli E1520]
 gi|323950670|gb|EGB46548.1| inner membrane protein yjgP [Escherichia coli H252]
 gi|323955547|gb|EGB51311.1| inner membrane protein yjgP [Escherichia coli H263]
 gi|323965650|gb|EGB61104.1| inner membrane protein yjgP [Escherichia coli M863]
 gi|323975396|gb|EGB70497.1| inner membrane protein yjgP [Escherichia coli TW10509]
 gi|324013725|gb|EGB82944.1| putative inner membrane protein [Escherichia coli MS 60-1]
 gi|324019238|gb|EGB88457.1| putative inner membrane protein [Escherichia coli MS 117-3]
 gi|324118822|gb|EGC12714.1| inner membrane protein yjgP [Escherichia coli E1167]
 gi|331035985|gb|EGI08223.1| inner membrane protein YjgP [Escherichia coli H736]
 gi|331040788|gb|EGI12946.1| inner membrane protein YjgP [Escherichia coli M605]
 gi|331046449|gb|EGI18539.1| inner membrane protein YjgP [Escherichia coli M718]
 gi|331051884|gb|EGI23923.1| inner membrane protein YjgP [Escherichia coli TA206]
 gi|331056981|gb|EGI28975.1| inner membrane protein YjgP [Escherichia coli TA143]
 gi|331071247|gb|EGI42604.1| inner membrane protein YjgP [Escherichia coli TA280]
 gi|331071862|gb|EGI43198.1| inner membrane protein YjgP [Escherichia coli H591]
 gi|331081502|gb|EGI52663.1| inner membrane protein YjgP [Escherichia coli H299]
 gi|332103405|gb|EGJ06751.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 366

 Score = 82.0 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 131/361 (36%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E + R+T      +  L+         
Sbjct: 242 DPNDTDQMDMRTLWNTDTD----------RARAELNWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + +     +     P L+++   +  + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGK-GKLDPTLWMWTVNLIYLALAIVLNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|85374866|ref|YP_458928.1| permease [Erythrobacter litoralis HTCC2594]
 gi|84787949|gb|ABC64131.1| predicted permease [Erythrobacter litoralis HTCC2594]
          Length = 365

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/321 (12%), Positives = 101/321 (31%), Gaps = 5/321 (1%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSR 96
            +++        LL  +G  +P ++    P+   + T   L ++N+N+E++ +   G S 
Sbjct: 45  EILAVEGNGQGELLTYAGLRVPQLVQRFLPYSVLLATIITLIALNQNSEVIAMKAAGLSA 104

Query: 97  ITLIKPVLFLAILLSIFLFISENIIEPKCRS--TIKQLSAKAQLALTFSYLEENLFFRLD 154
             ++ P+L  A L+++  F     +  +  +     + +    +                
Sbjct: 105 HQVLAPLLLTAGLVALVSFGFNERVVTRATATLKAWEATEFGAVPPDSDVKANVYITDGT 164

Query: 155 DDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI 214
           + L  +       +   G      R          ++ S         L +         
Sbjct: 165 NILTARTVAGTGADIRLGDVTWYRRAPTGQIAEQVRAVSASFVDPGWQLEN--PQSFDIT 222

Query: 215 SKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHK 274
           + + +  +          A      +  +      L +   ++           R+++  
Sbjct: 223 TANTTTSEAMVVGEGLTPAQIELEAIDPDAVPFWRLGSA-IDSYEAIGRRTAELRAKWWH 281

Query: 275 RLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           +L+  L   +  L+  VAA   A   Q      I + L  ++ V    +  +      P 
Sbjct: 282 KLSGPLSAFLMPLLGAVAAFGLARSGQLFIRAVIGMGLGFAYFVVDNAALAMGSFGGYPP 341

Query: 335 YIPILYLFLFCISSIFLLMIK 355
           ++     FL  +     ++I+
Sbjct: 342 FLAAWAPFLLFLLVGETVLIR 362


>gi|118602882|ref|YP_904097.1| permease YjgP/YjgQ family protein [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|118567821|gb|ABL02626.1| permease YjgP/YjgQ family protein [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 360

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 121/357 (33%), Gaps = 1/357 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI++ +        L  + I      L+ +  +  +  ++  + K     IP V
Sbjct: 1   MKILDRYIVKTMAFYTSAVMLVWLGIYAFFNFLEEVTFIGQANYTVFEVTKYVISDIPAV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +   +     + +   L  +   ++L++I + G S + +   V+  A++    +     +
Sbjct: 61  VYSYSSVIILLGSLLALGHLASTSQLVVIRSAGVSIMQISNIVVRAALMFIAIVIFIGEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + L AKA         ++  + +  +        ++  +      I     
Sbjct: 121 VTPITIEYAESLRAKALGENITFKNQQGFWLKDSELFIHVKKNFDGKSFQDVTLIKLRAP 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                I ++ S   + D   +  +      K       S   F+ Y++Q          L
Sbjct: 181 DTLDSIVHSDSAISNGDNLELSQSIHYQFGKDGNLTTFSENNFEKYSVQVSFNKKLIENL 240

Query: 241 KANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           K + + LS   L              + +  E +KRL + +  +   L S++        
Sbjct: 241 KKDPRELSTWHLYQQIRFLTINHLAADIFEVEIYKRLMKPITLIAMILFSMLFVFGSLRD 300

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               K   + + +S+ F +      ++       +++      L  +  ++ L+ KK
Sbjct: 301 ASLGKNIFLGLMMSLFFELASRIGGVLSLRFDYNHFLSASIPTLLMLVFVWALLKKK 357


>gi|312795336|ref|YP_004028258.1| hypothetical protein RBRH_03152 [Burkholderia rhizoxinica HKI 454]
 gi|312167111|emb|CBW74114.1| Hypothetical membrane spanning protein [Burkholderia rhizoxinica
           HKI 454]
          Length = 382

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/379 (11%), Positives = 111/379 (29%), Gaps = 25/379 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y+ + +  +F         + +   ++  +N V       +  +       P+ 
Sbjct: 1   MRLYERYLAKQVYLTFAFILFAFSGLFFFFDLISELNAVGHGNYKFSYAVLRVMLQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  ++E  I   +G S    +  +L + + + +  F+   I
Sbjct: 61  FYEIIPVAALISAIYVFAQMAASSEFTIFRVSGLSTHRALGSLLKIGVPIVVLTFVIGEI 120

Query: 121 IEPKCRSTIKQLS---------AKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ 171
           I P      +++          +  Q  +                 ++ + +  P+ T+ 
Sbjct: 121 IGPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTVPGNGATAQVTRFVNVGELKPDATIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHR--------------KSPISKD 217
            + I +                  +     +L      +               +P+ K 
Sbjct: 181 NVRIYEFDSQFRLADVRTAQSGRYMRPGQWLLKGVTETQLHDVAPAAATAKDVLNPVYKS 240

Query: 218 ISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
             +   +       +    +++L A D+     L     +     +  + Y     +++ 
Sbjct: 241 AQVSMPEYPMRSELTPQILSVLLVAPDRMSMTNLFSYVQHLRENHQDAQRYVIALWRKVL 300

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
                ++  ++S+  A                I L +SF +F      I  +  N +  P
Sbjct: 301 YPFAVLVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWPAP 358

Query: 338 ILYLFLFCISSIFLLMIKK 356
           +       I     L   +
Sbjct: 359 LTAATPGLIYLALGLFALR 377


>gi|194437844|ref|ZP_03069939.1| putative permease [Escherichia coli 101-1]
 gi|256025197|ref|ZP_05439062.1| hypothetical protein E4_17633 [Escherichia sp. 4_1_40B]
 gi|260858413|ref|YP_003232304.1| inner membrane protein [Escherichia coli O26:H11 str. 11368]
 gi|301325194|ref|ZP_07218718.1| putative inner membrane protein [Escherichia coli MS 78-1]
 gi|331671169|ref|ZP_08372002.1| inner membrane protein YjgP [Escherichia coli TA271]
 gi|194423340|gb|EDX39332.1| putative permease [Escherichia coli 101-1]
 gi|257757062|dbj|BAI28564.1| inner membrane protein [Escherichia coli O26:H11 str. 11368]
 gi|300847955|gb|EFK75715.1| putative inner membrane protein [Escherichia coli MS 78-1]
 gi|323945994|gb|EGB42032.1| inner membrane protein yjgP [Escherichia coli H120]
 gi|323970485|gb|EGB65744.1| inner membrane protein yjgP [Escherichia coli TA007]
 gi|331061758|gb|EGI33684.1| inner membrane protein YjgP [Escherichia coli TA271]
          Length = 366

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 131/361 (36%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E + R+T      +  L+         
Sbjct: 242 DPNDTDQMDMCTLWNTDTD----------RARAELNWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + +     +     P L+++   +  + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGK-GKLDPTLWMWTVNLIYLALAIVLNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|118497255|ref|YP_898305.1| membrane protein of unknown function [Francisella tularensis subsp.
           novicida U112]
 gi|194323557|ref|ZP_03057334.1| putative permease, YjgP/YjgQ family [Francisella tularensis subsp.
           novicida FTE]
 gi|208779048|ref|ZP_03246394.1| putative permease, YjgP/YjgQ family [Francisella novicida FTG]
 gi|254372628|ref|ZP_04988117.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|118423161|gb|ABK89551.1| conserved membrane protein of unknown function [Francisella
           novicida U112]
 gi|151570355|gb|EDN36009.1| permease YjgP/YjgQ family protein [Francisella novicida GA99-3549]
 gi|194322412|gb|EDX19893.1| putative permease, YjgP/YjgQ family [Francisella tularensis subsp.
           novicida FTE]
 gi|208744848|gb|EDZ91146.1| putative permease, YjgP/YjgQ family [Francisella novicida FTG]
          Length = 360

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 120/358 (33%), Gaps = 12/358 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 2   ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYSQGLGIDSIVKFVILTIPENVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  L   + L+I   I+   + 
Sbjct: 62  LVAPIAIFLAIVICFGKYFANNEMFVTLAGGITWMQIVKNTLKPVVALTIITLITVMYLN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  + T+    A        S + +    +  D   I I   + N         ++    
Sbjct: 122 PLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIYIGNKSGNTLSDVFLYQNTPQDG 181

Query: 183 THKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +K+  A +  I  D+ A      +  ++ K+  + + S    K         +      
Sbjct: 182 EYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYTIFDNSDRDYNH 241

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D+    L                 Y++EF  R+   +  ++    S++A     L  
Sbjct: 242 DRVDR----LYMHTLIENFNDKTNGTAYKAEFFGRINNAISVIVS---SLLALALCRLRP 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
           ++ K   +  S+ +   ++   +  I+ +  N      +  +L     +   +  I+K
Sbjct: 295 RQNKYAKLLPSVVV-LAIYLCTNMFINTLMANGSVPVWIGFWLPHIFFTIFAVRTIRK 351


>gi|114798132|ref|YP_760297.1| putative permease [Hyphomonas neptunium ATCC 15444]
 gi|114738306|gb|ABI76431.1| putative permease [Hyphomonas neptunium ATCC 15444]
          Length = 351

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 112/361 (31%), Gaps = 15/361 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y+     +  L++   +V +  V+  L   + + +        ++     +P + 
Sbjct: 3   SRLSRYLSWLFLQRLLVTVFALVALLGVLDALSNADKLPA-GAGFEGQMRYMWLRLPALF 61

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             +  F F +       S+ R  EL+ I   G S    ++ ++ +  L ++      + +
Sbjct: 62  DRIVVFAFLLAALLTYASLIRRNELVAISAAGISVFGQMRTLIPVVFLTAVAAAFIIDTV 121

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P    ++        L       EE         + +   K      L GI I +    
Sbjct: 122 GPPASRSLLAWLGPEALQEDAQVPEELWLSDGKFLIEL---KSMQAEELTGITIFERNAE 178

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                      +   D    +   G+        +  + M F  +T      +   ++  
Sbjct: 179 GAVVAITTAETARPADGGWALSGTGQRR---FDGEPPTDMTF--WTSPQTPESLQLLLSP 233

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             D  +S L+  +    +        Y      R    L  V F L+++     +   R+
Sbjct: 234 PRDLAISNLIALSEMRGS-GSRPSGAYELWALNRFLLPLTAVGFLLLAVPVM--QVYGRR 290

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKKKYT 359
                 +   +++ F  +     I+  + +N    PIL   L +  +    + +  ++  
Sbjct: 291 SNADIAVAAGVAVGFF-YMVVDGILKTLAENGSISPILAVALPILALFLGSMWLALEREI 349

Query: 360 K 360
           +
Sbjct: 350 R 350


>gi|329850878|ref|ZP_08265723.1| hypothetical protein ABI_37970 [Asticcacaulis biprosthecum C19]
 gi|328841193|gb|EGF90764.1| hypothetical protein ABI_37970 [Asticcacaulis biprosthecum C19]
          Length = 380

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 111/362 (30%), Gaps = 16/362 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
              E YIL+     F  + + +  +  +I  ++    V++        +L +     P+ 
Sbjct: 19  SRLETYILQTCVAMFASALMVVSALILLINYVEISRSVAARADLGGLEVLVMLFQRSPSA 78

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ PF F   +     ++NR +EL+ +   G S    + P    A    I      N 
Sbjct: 79  ILILLPFAFLFGSLFAFVNLNRRSELIAMRAAGVSAWRFVLPATVSAFAFGILTIGVLNP 138

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP------NNTLQGIF 174
           +    +   ++    A+        E     + D D  + I           +      +
Sbjct: 139 VASHLQDVYERKVVAAEAFAPTDPAEAIYLRQGDSDRQVVIRADGQASAQIGHLRGVTFW 198

Query: 175 IVDSRDTQTHKIYYAQSGS-IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           I  +                  L   +  L D   +     ++  +++     TL +   
Sbjct: 199 IFTTDRRGAPSFIERVDAREAILRPGSWQLKDAREYTLDKPAQFYNVL-----TLSSNLD 253

Query: 234 NSSTIVLKANDQNLSFLLNP-NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                   A+ Q++ F   P              +Y  + H+ L+  L       +  V 
Sbjct: 254 PQKAFKRYASTQSVPFWRLPGLIRQNQISGFSTTSYELKLHQLLSTPLMFAAMTALGAVF 313

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           +    L+R       +   +S+ F +F+         + +     +       ++ +  +
Sbjct: 314 SL--RLMRLGGLTILVTSGVSLGFVIFFVNQLFASMGKADVIPAALAGWSPAVLAMLGAM 371

Query: 353 MI 354
            +
Sbjct: 372 TL 373


>gi|16125408|ref|NP_419972.1| hypothetical protein CC_1156 [Caulobacter crescentus CB15]
 gi|221234151|ref|YP_002516587.1| hypothetical protein CCNA_01214 [Caulobacter crescentus NA1000]
 gi|13422474|gb|AAK23140.1| hypothetical protein CC_1156 [Caulobacter crescentus CB15]
 gi|220963323|gb|ACL94679.1| hypothetical membrane spanning protein [Caulobacter crescentus
           NA1000]
          Length = 406

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 108/328 (32%), Gaps = 11/328 (3%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSR 96
           +++S S+     + +++  L+P  L +  P  F +    V+  ++  +E+  +  +G S 
Sbjct: 47  DVLSQSSARFGYVAQLAANLVPHYLGLALPVAFFVALFIVIVKLSDGSEIDALLASGQSL 106

Query: 97  ITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD 156
             +  P + + +LLS+F  I    ++P  R   + +   A  A     L    F      
Sbjct: 107 ERIAAPFVAVGVLLSVFSIIVFGYMQPYSRYAYRAVMHAAVNAGWNGRLAGGAFIDDKGS 166

Query: 157 LYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKS 212
           L    S       L  +FI         +I  A S  + +D       + L DG      
Sbjct: 167 LLTADSADIAGQRLTRVFIRRLDAKGQEEIITAASADLKMDPDGKTITMDLRDGRRIAHD 226

Query: 213 PISKDISIMKFKSYTLQTESAN----SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETY 268
                   + F S T QT  +              +  +  L     +      +   T 
Sbjct: 227 AYGT-YRNLAFTSLTTQTPLSAAAVLLRDRGGDERELTMGELRREAKSPDPVVSK--GTL 283

Query: 269 RSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
            SEF+ RL +  F     L++           +   +    + L            +   
Sbjct: 284 LSEFYGRLARAAFLPFLPLLAFPLGLASKRGNRAPGLIMAGLLLLAFQHSLLLGQGMAKA 343

Query: 329 IEQNPYYIPILYLFLFCISSIFLLMIKK 356
            + + +    +   LF   S++L +  +
Sbjct: 344 GKADAFAAIWIPFTLFAALSVWLFVGSR 371


>gi|238787644|ref|ZP_04631442.1| Inner membrane protein yjgP [Yersinia frederiksenii ATCC 33641]
 gi|238724431|gb|EEQ16073.1| Inner membrane protein yjgP [Yersinia frederiksenii ATCC 33641]
          Length = 364

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 127/364 (34%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  + +LI   L LA++ S    ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALVTSALAAVNTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+   + + L    F    D                 +F+   R   
Sbjct: 122 PWSSKHQDEVLTDARANPSLAALAGGQFKSSTDGNSALFIGNVSGKEFNRVFLAQLRPNG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q +ILN G  +  + + +D  I  F  Y           
Sbjct: 182 NQRPSVVVADSGHMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQTIIGHQEVQQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A    +  L +    +           R+EFH RLT  +  VI  L+         
Sbjct: 242 DNSVAEQMTMRQLWHATEPDA----------RAEFHWRLTLIVSVVIMALL---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + +     +     P+++L+    + + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQTSLRSNASK-GKLDPLVWLWAVNGAYLALAVLLNL 347

Query: 358 YTKI 361
           +  +
Sbjct: 348 WDSL 351


>gi|194426540|ref|ZP_03059094.1| putative permease [Escherichia coli B171]
 gi|300928087|ref|ZP_07143635.1| putative inner membrane protein [Escherichia coli MS 187-1]
 gi|194415279|gb|EDX31547.1| putative permease [Escherichia coli B171]
 gi|300463884|gb|EFK27377.1| putative inner membrane protein [Escherichia coli MS 187-1]
 gi|323940179|gb|EGB36373.1| inner membrane protein yjgP [Escherichia coli E482]
          Length = 366

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 131/361 (36%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   I+     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAINVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E + R+T      +  L+         
Sbjct: 242 DPNDTDQMDMRTLWNTDTD----------RARAELNWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + +     +     P L+++   +  + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGK-GKLDPTLWMWTVNLIYLALAIVLNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|251791280|ref|YP_003006001.1| permease YjgP/YjgQ family protein [Dickeya zeae Ech1591]
 gi|247539901|gb|ACT08522.1| permease YjgP/YjgQ family protein [Dickeya zeae Ech1591]
          Length = 370

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 133/361 (36%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETFKSQVAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGVPQMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G S+  L+K  L L++L +     +   + 
Sbjct: 62  LILPLSLFLGLLMTFGRLYAESEITVMHACGLSKSVLLKAALLLSLLTASLATANVLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DSRD 180
           P       ++ A+A+     + L E  F +  D   +       +   + +F+     R+
Sbjct: 122 PWSSRHQDEVLAQARANPGMASLAEGQFQQTQDGNSVLFVGKVNSGDFERVFLAQLHPRE 181

Query: 181 TQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G++       Q + L+ G  +  + + +D  I  F +Y         + 
Sbjct: 182 NTRPSVVVADRGTVAARGDGSQVVTLSKGTRYEGTAMLRDFRITDFINYQAIVGYQPVAV 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   +L  L   +              R+EFH RLT  L  ++  ++         
Sbjct: 242 DPSNVEQMSLKTLWESSDIAA----------RAEFHWRLTLILSVLVMAVM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   S +     +     P+++++L  +  + L +I   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLVFFLLQSSLRSNAGK-GKLDPMVWMWLTNLVYLALAVILNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|323960302|gb|EGB55943.1| inner membrane protein yjgP [Escherichia coli H489]
          Length = 366

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 131/361 (36%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E + R+T      +  L+         
Sbjct: 242 DPNDTDQMDMRTLWNTDTD----------RARAELNWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + +     +     P L+++   +  + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGK-GKLDPTLWMWTVNLIYLALAIVLNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|332876989|ref|ZP_08444742.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332685097|gb|EGJ57941.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 491

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 113/304 (37%), Gaps = 22/304 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL     +FL +   +V I     I   I+ ++     L I+ K   Y IP +
Sbjct: 1   MKILDRYILTQFLTNFLGALSILVLIFVFHTIFTYIDELAGRGLELWIIGKFLIYFIPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ P    + +     +   N E   +  +G S + ++ P++ L  LLSI  F   N 
Sbjct: 61  IPIIMPLAVVISSIMTFGAFAENYEFAAMKASGISLMRVMLPLIVLMALLSIGTFFLANN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +  L +          + E +F  + +D+ IK++K + +N      ++  + 
Sbjct: 121 VIPVAYREVYTLRSNIAKVKPAMAISEGVFSNIGEDISIKVAKKSGDNDQFLHNVLIHKK 180

Query: 181 TQTHKIYYA--------QSGSIDLDRQAIILNDGEVHRKSPISKD-------ISIMKFKS 225
           T                ++   + +   +IL DG  +     +          + + F+ 
Sbjct: 181 TPDRVNRTVIFAKKGELKTAKTNSNFLQLILEDGTYYEDIKTNSYEAQERLPFAKVHFQK 240

Query: 226 YTLQTESANSSTIVLKAND-------QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
           Y +  + ++ + +              N+  L     +      + +  Y +   +R   
Sbjct: 241 YIINLDLSHLNNVDFNEKTDATTYRMMNVGQLGYAIDSLRTDFKQNITDYGNNMFRRTGF 300

Query: 279 WLFP 282
           ++ P
Sbjct: 301 YIAP 304



 Score = 40.8 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
               N+  YR +L+  +      +    +   +   ++   A   A +R+     P+ ++
Sbjct: 356 EYRQNDLEYRYKLMNLHILNLSDKFALTVACFVLFFVA---APLGAFIRKGGIGLPLVVA 412

Query: 312 LSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
             I F  ++     +  I +N    P L  ++  +  +
Sbjct: 413 -MIVFLAYYFIGMFMKNIAENNTINPALAPWIPALILL 449


>gi|188495933|ref|ZP_03003203.1| putative permease [Escherichia coli 53638]
 gi|188491132|gb|EDU66235.1| putative permease [Escherichia coli 53638]
          Length = 366

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 131/361 (36%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGYQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E + R+T      +  L+         
Sbjct: 242 DPNDTDQMDMRTLWNTDTD----------RARAELNWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + +     +     P L+++   +  + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGK-GKLDPTLWMWTVNLIYLALAIVLNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|82779327|ref|YP_405676.1| hypothetical protein SDY_4285 [Shigella dysenteriae Sd197]
 gi|81243475|gb|ABB64185.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 366

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 131/361 (36%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAIILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E + R+T      +  L+         
Sbjct: 242 DPNDTDQMDMRTLWNTDTD----------RARAELNWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + +     +     P L+++   +  + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGK-GKLDPTLWMWTVNLIYLALAIVLNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|167646491|ref|YP_001684154.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
 gi|167348921|gb|ABZ71656.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
          Length = 367

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/358 (11%), Positives = 95/358 (26%), Gaps = 12/358 (3%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVLP 62
            E Y+L+    S   +   +  +  +I  +     V +        LL ++    P  + 
Sbjct: 7   IERYVLKKTLGSLAAALAVVSVLVMLIAFVDISKSVGTRAEVGFGELLFLTVLQAPATIL 66

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++TPF F   T      +NR +EL+ +   G S    I P    A ++ +      N + 
Sbjct: 67  LLTPFIFLFGTLGAFVGLNRRSELIAMRAAGVSAWRFIMPAAVAAFVMGLLTLTLLNPLT 126

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ-------GIFI 175
               +  +            S  +     + DD   + I     +            +F+
Sbjct: 127 AAMSAQFETSRNAMMENYLKSAPKGLWLRQGDDKTQVVIRARARDQINGAVRLRGVSLFV 186

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              +     +                    G            S     +     +   +
Sbjct: 187 YAVQPNGALQFSQRIEADEARLEPGFWQLSGVRVAMPGAGAIRSETY--TLPSNLDDRTA 244

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S          +  L              +  +R    + L   L      +++   + +
Sbjct: 245 SERFSNPQAIAVWRLPETIKRTEAAGFSSI-PFRLRLQQVLATPLLFAAMSVLAAAFSLR 303

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGF-SYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
              +     +    ++L  +F  F      +       P         +  ++ + LL
Sbjct: 304 LMRLGGLAGLAGAGVTLGFAFFFFNELCGALGKADVLTPAMAAWTPPIVALLAGLTLL 361


>gi|74314740|ref|YP_313159.1| hypothetical protein SSON_4446 [Shigella sonnei Ss046]
 gi|254037284|ref|ZP_04871361.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|300916357|ref|ZP_07133099.1| putative inner membrane protein [Escherichia coli MS 115-1]
 gi|300935933|ref|ZP_07150886.1| putative inner membrane protein [Escherichia coli MS 21-1]
 gi|73858217|gb|AAZ90924.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|226840390|gb|EEH72392.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|284924431|emb|CBG37556.1| putative permease [Escherichia coli 042]
 gi|300416317|gb|EFJ99627.1| putative inner membrane protein [Escherichia coli MS 115-1]
 gi|300458869|gb|EFK22362.1| putative inner membrane protein [Escherichia coli MS 21-1]
          Length = 366

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 130/361 (36%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y           
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVVL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E + R+T      +  L+         
Sbjct: 242 DPNDTDQMDMRTLWNTDTD----------RARAELNWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + +     +     P L+++   +  + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGK-GKLDPTLWMWTVNLIYLALAIVLNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|319955107|ref|YP_004166374.1| permease yjgp/yjgq family protein [Cellulophaga algicola DSM 14237]
 gi|319423767|gb|ADV50876.1| permease YjgP/YjgQ family protein [Cellulophaga algicola DSM 14237]
          Length = 493

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 99/294 (33%), Gaps = 13/294 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+L     +F  S   ++ I     I   I+ ++     + I+LK   Y++P +
Sbjct: 1   MRILDRYLLSRFLYNFFSSFAILMLIFVFQTIWLFIDDLAGRGLDVMIILKFLFYIMPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    + +     S+  N E   +  +G S    ++P++    +L + +F   N 
Sbjct: 61  MEKVLPLTVLLASILTFGSIAENYEFAAMKASGISLQRSMRPLIIFVCILGVVVFYFANS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFR-LDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P     I  L          + + E  F      ++ +K+ +   +N      ++  R
Sbjct: 121 VIPASEQKIYNLRKNIGQVKPSTAIVEGAFSDLEGTNMNMKVDRKYGDNDRFLENVIIHR 180

Query: 180 DTQTHKIYYAQSGSIDL-------DRQAIILNDGEVHR-----KSPISKDISIMKFKSYT 227
            +                      D   ++L DG  +      KS  ++     K     
Sbjct: 181 KSDNSINNTVIKAKTGELVSSEGSDILKLVLRDGHYYEDITKKKSTENRKYPFAKSSFEI 240

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
                  S   V    D++++     N        + ++       +  ++ ++
Sbjct: 241 YTINQDISKLDVNLEEDRSVTTDKMKNVMRLIKDADSIKKNNLIIVETFSKSIY 294



 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 64/179 (35%), Gaps = 10/179 (5%)

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL-QTESANSSTIVLKA 242
            K  Y ++G+  +  +   L++      S  +  +    F +  +         + +L A
Sbjct: 290 SKSIYNRAGAFAILSKKDSLDNANFKPLSKDALLLQKAMFDTLNIVSLYPEYQKSQILNA 349

Query: 243 NDQNLSFLL---NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                + +L       +  + R ++   +    HK+    L  ++   +    A   A++
Sbjct: 350 AKNTTTNILASIRSKKDELDKRYKIYNMHIVSLHKKFALGLSCIVLFFVG---APLGAII 406

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIFLLMIKK 356
           R+     P+ +++ + F  ++          ++    PI+  +     +  + + + K+
Sbjct: 407 RKGGLGVPMVVAILL-FLTYYFIGVFSENYAKDGNMSPIIGAWTSTLIMLPLGVFLTKR 464


>gi|313672806|ref|YP_004050917.1| permease yjgp/yjgq family protein [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939562|gb|ADR18754.1| permease YjgP/YjgQ family protein [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 345

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 132/351 (37%), Gaps = 14/351 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YIL  I   F++S +F +FI    +++   +LV S      I+++   + +P+ 
Sbjct: 1   MNKLSKYILEEIYPIFIISNIFFIFILLFDKVVDLTDLVFSKNVPTIIIIETFIFYLPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +        ++ + EL+++ + G S ++L+KP ++  IL ++  F++   
Sbjct: 61  MMVTIPTSALLAVMTAHNRLSSDAELVVMKSLGLSPMSLLKPTIYFGILATLLAFLTSFY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P           +    ++   ++EN F++    + I + K   +N    I ++D + 
Sbjct: 121 LLPYGNKYAIYNLKRTVEYVSLKDIKENEFYKEIPSIAIYVKKKVDDNKFLQITLIDEKG 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                   A          A++ +          +     ++FK +       ++    +
Sbjct: 181 GSL---ITAAEADAYQKFGAVVFDLKNGAIIQGKNDRYGKIEFKKFYFVVNVDSNLNREI 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K+             +    R      Y+ EF KR+      +I  L+ +   +      
Sbjct: 238 KSERFMFM-------DELISRFNDGYIYKFEFSKRVALPFSTLIMALLGL---NMGVFFH 287

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIF 350
           +  +     I+L I F          +   + NPY+ P +   +F   S+ 
Sbjct: 288 RANRSINWIIALGIIFSYNVIMFMSENLAGKINPYFAPWIANTIFAFLSLI 338


>gi|269467941|gb|EEZ79676.1| permease [uncultured SUP05 cluster bacterium]
          Length = 373

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/359 (12%), Positives = 118/359 (32%), Gaps = 21/359 (5%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +R +        + I  + +  Q++  IN        ++ LL +  + +   +P++    
Sbjct: 1   MRNVLVMLSAVFIIIGLVVFGNQLVLVINQSLKEGIPVSDLLPLISFKMIRDVPLILSLS 60

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             +     ++ + +++E +++++ G      +  +  + I + IF+        P  +  
Sbjct: 61  LFLAIILSVSRLYKDSEAIVMNSLGLGDKQFMLFIQPIVIAIFIFILFLTTYAVPWSKHQ 120

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP------NNTLQGIFIVDSRDTQ 182
              +  + + A  FS+++E  F    D   +  +             ++ IFI    + +
Sbjct: 121 RNMVMDRTENASEFSFIKEGEFQEFKDGDVVFYASKVKAGGELGQQEMEEIFIYTLSNDE 180

Query: 183 THKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           +      Q+            + L DG  +   P   +  I+ F  Y L+    +     
Sbjct: 181 SIITLAKQANKYTDGITKSVYLRLKDGTRYHGFPGDTNKKILNFDLYDLKIIDGDKEKTK 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                       +   ++            SE   RL+Q +  +I     I+        
Sbjct: 241 DTIVKVEGQDTFDLFRSDGLKE-------VSELQWRLSQPISVLILS---ILGILLGKSS 290

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY--YIPILYLFLFCISSIFLLMIKK 356
            +  K   +   + +              +EQ      + + ++ L  +  IF+  + +
Sbjct: 291 PRGGKNLGVLFGVVVFILYNNALLVAKSNLEQGSVHPIVGLWWVHLLMVLIIFIFYLYR 349


>gi|326388615|ref|ZP_08210208.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206866|gb|EGD57690.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
          Length = 356

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 107/344 (31%), Gaps = 2/344 (0%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRIN-LVSSSTESLNILLKISGYLIPTVLPMVT 65
           YI R      +   L +V +  ++ +L     ++++       LL+      P ++    
Sbjct: 4   YIARLFAVRIVAVLLMLVLVLQMLDLLSESGHILAAKGNGQMELLRYGMLRTPQLVSRFL 63

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P+   + T   L ++N+N+E++ +   G S   ++ P+  ++   S+F F     +  + 
Sbjct: 64  PYSVLLATIITLMTLNQNSEVIAMKAAGLSAHQVLAPLFLVSAAASVFTFTFNERVVVRS 123

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHK 185
            +T+K        A+      ++  +  D    +     +   T   +  V         
Sbjct: 124 TATLKAWQDVDYGAVPTDSDVKSNVWLQDGPNIVFAKTISGRGTATRMSEVSWYRRDPTG 183

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ 245
           +      +                     S  ++ +                I     D+
Sbjct: 184 VVTEIVHAPLATYTHPGWRFDHPTSFDVQSAALTTLPGPKVYASGVEPTQIIIRKTDADR 243

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
                L+ +                ++  +++  L  V+  L+  VAA   A   +    
Sbjct: 244 ESITQLSQSIAEIQAAGYRTNELDGKWWHKISGPLSAVLMPLLGSVAAFGLARSGKLFVR 303

Query: 306 HPIFISLSI-SFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
             I ++L    F V      + +    +P+        LF +  
Sbjct: 304 AVIGMALGFAYFVVDNAALAMGNFGGYSPFLAAWSPFLLFLLIG 347


>gi|251771423|gb|EES52002.1| permease YjgP/YjgQ family protein [Leptospirillum
           ferrodiazotrophum]
          Length = 377

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 121/370 (32%), Gaps = 13/370 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+   +   F +S L +V +    Q L  +NL+ +   S+  + ++   + P  
Sbjct: 1   MKIIHRYLFLELLTPFFLSLLVLVILLLTQQALLIMNLLVNKGLSVETVFRLLSMIFPQF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P      +T     +  + E++    +G S   L+ P+   A +     F     
Sbjct: 61  LSMIIPVSVLTASTATFHRLASDGEIIAFKASGISLSRLLLPLFLFAAIGFGTNFYLSLK 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
                  +++ L  +         ++   F        I + K    + + G+FI    +
Sbjct: 121 AMETQGLSLQDLLVRVFQKKLSLAIKPQSFNNFMGRFIIYVEKMPTLSHIDGVFIYQKEK 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVH-RKSPISKDISIMKFKSYTLQTESANSSTI 238
            T    + +AQSG I  +R    L     H            ++F SY L     ++   
Sbjct: 181 KTGPRTVIFAQSGEILNERHPPGLRLKLSHGTFFQEGSAQQYIRFGSYDLTITGHHTDDS 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           +      ++  +      +P+  P L        +K  T       F  + I        
Sbjct: 241 IRVK---SIDEIRAEIARSPSPDPSLFRALEDR-YKNYTYPFSCFFFAFLGIPYGIYTMR 296

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM----- 353
             +        +++ + + +      ++ K   +P    +    +       LL      
Sbjct: 297 SGRLAGFVFATVTVILFYMMNTIDDLMVSKRLLSPAAAALAPDIVLAALMTALLFMVFHE 356

Query: 354 --IKKKYTKI 361
             +K +  +I
Sbjct: 357 VDVKSRLPRI 366


>gi|194336947|ref|YP_002018741.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309424|gb|ACF44124.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 441

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 105/286 (36%), Gaps = 7/286 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    SFL + + I+F+  +       +           ++++       +
Sbjct: 1   MKIIDRYILKAHVGSFLFAFVTIIFVLILQFFATFADRFMGKGIGFTAMVELILLQSAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +       S+   +E+ +   +G S   L+ PVL   +LLS+F+    N+
Sbjct: 61  VGLAAPMAVLVSVVMAFGSLTTTSEMTVFRASGISLYRLMMPVLLAGLLLSLFVERFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           + P+     K L      +     L EN F  L D   I +   + +   L+GI I D+ 
Sbjct: 121 VLPEANYYAKSLMVDIARSKPAFGLAENAFSTLVDGYSIFVRSTDEHSKELRGIVIYDAS 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAII----LNDGEVHRK-SPISKDISIMKFKSYTLQTESAN 234
            +    +  A+ G+ID           L +GE+H+   P  K    M F+ +    ES+ 
Sbjct: 181 RSDYKTMVTAEKGTIDFSGDDHYLVMTLFNGEIHQVRQPDHKSYRNMSFQKHRFVFESSG 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL 280
                   +          +        +      +   KR+   L
Sbjct: 241 FGFSRSSESRMRSGD-GELSAKELITIGDEFRKRIAASEKRIQMPL 285



 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 4/98 (4%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           L+    N      +   Y + +HK+    L   +F L+           R+        I
Sbjct: 328 LDGELKNIEANRNMYNRYMAAYHKKYALSLACFVFVLVGAPLGVLA---RRGGFGVGAAI 384

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           SL + F ++W       KI +     P++ ++L     
Sbjct: 385 SLFL-FVLYWMLMISGEKIAERGILDPMISMWLANAVM 421


>gi|167585748|ref|ZP_02378136.1| permease YjgP/YjgQ family protein [Burkholderia ubonensis Bu]
          Length = 382

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/358 (12%), Positives = 102/358 (28%), Gaps = 25/358 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ FE Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLFEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++                ++ +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARDNGEQVTRFVNVGSLSPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS---------------K 216
            + I +       +                +L        +PI                 
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQTGRYEAPGHWLLTGVTETELTPIKPIGGQPADALNPVYRS 240

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
               +              S +++     +L  L      +     +  + Y     ++L
Sbjct: 241 QQVTLPEFRLRSDLTPQILSVLLVSPERMSLINLFR-YIQHLKENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
                  +  ++S+  A                I L +SF +       I  +   P 
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357


>gi|218702964|ref|YP_002410593.1| hypothetical protein ECIAI39_4734 [Escherichia coli IAI39]
 gi|218372950|emb|CAR20831.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI39]
          Length = 366

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 132/361 (36%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +     S    N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDSDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E + R+T      +  L+         
Sbjct: 242 DPNDTDQMDMRTLWNTDTD----------RARAELNWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + +     +     P L+++   +  + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGK-GKLDPTLWMWTVNLIYLALAIVLNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|88703588|ref|ZP_01101304.1| Predicted permease YjgP/YjgQ family protein [Congregibacter
           litoralis KT71]
 gi|88702302|gb|EAQ99405.1| Predicted permease YjgP/YjgQ family protein [Congregibacter
           litoralis KT71]
          Length = 362

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/353 (14%), Positives = 117/353 (33%), Gaps = 26/353 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLF-IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           MK    Y+   +    L      +  I    + ++ +   +S   +  ILL +  Y +P 
Sbjct: 1   MK-LRGYLAGDVLGHTLAVSSVLL-AIILTGRFVKYLAEAASGKLAAEILLPVMFYRLPG 58

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L ++ P    +        +   +E++I+   G     L    L  A+L+ + +     
Sbjct: 59  FLELLLPLGLFIGILMSYGRLYVESEMVILSACGVGPAKLASFTLAPALLIMLVVAGLSL 118

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           ++ P+  +  + L    Q       L    F    DD  +  +        +   +    
Sbjct: 119 LVTPQGVARSEALLNDPQALQGLQLLAAGRFQPRGDDGTVTYAADIDPEAGELDQVFLYA 178

Query: 180 DTQTHKI------YYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSYTLQ 229
                          A+ GS+ +D ++ +    L DG     +P   D  I++F ++  +
Sbjct: 179 PEDRTADTEVAGVTVARRGSVVVDPESGVRYLELRDGYRFSGTPGRADYRIVRFGTFGQR 238

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                S       + +  + LL+ +              R+  H RL+  L   +  L++
Sbjct: 239 LPDTPSMARSEPVDAKPTAALLDSDNAED----------RAALHWRLSVALMVPVVALLA 288

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           +          +R +   +  +L +     +  + I   + +       +YL 
Sbjct: 289 LSL---SKTNHRRGRYIKLAPALLLHLSYLFALASIRTSVAEGDAPAYQMYLL 338


>gi|89891367|ref|ZP_01202873.1| permease YjgP/YjgQ [Flavobacteria bacterium BBFL7]
 gi|89516398|gb|EAS19059.1| permease YjgP/YjgQ [Flavobacteria bacterium BBFL7]
          Length = 481

 Score = 81.2 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 9/255 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL    ++FL   + I+FI  +  I   I  ++     +  + K   Y IP +
Sbjct: 1   MKILDRYILTSFIKTFLSVFIVIMFILILQAIWLYIKDLAGKDLDMITIAKFMMYTIPVI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    + +  V  +M  N E   + + G S    ++ ++ +   L +  F   N 
Sbjct: 61  VPLALPLSIILASIMVFGNMAENYEFAAMKSNGISLQRAMRSLMIVVGTLGVTSFFFANT 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P        L      +     +    F +L D       K           ++  ++
Sbjct: 121 VIPWGHFKQGNLRRNIVNSKPAMAIGVGNFNQLGDINIKVDQKTGDRGQYLDNVLIHKKN 180

Query: 181 TQTHKIYYAQ-------SGSIDLDRQAIILNDGEVHR--KSPISKDISIMKFKSYTLQTE 231
            + +  Y            S+  +   ++L DG  +       ++      F      T 
Sbjct: 181 PKRNGNYTVIKSKKGELKSSLKSNIIQLVLTDGNYYDDLFPENAQKRRSSPFVRSYFDTY 240

Query: 232 SANSSTIVLKANDQN 246
           + N     L   D N
Sbjct: 241 TLNVDVSGLNNTDLN 255



 Score = 41.9 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 6/108 (5%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           LN      +   + +  +  E  K+       +I   I    A   A++R+     P+ I
Sbjct: 346 LNNRLFQLSEESKRIAKHEIEIQKKFVLGAACIILFFIG---APLGAIIRKGGMGLPLVI 402

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIKK 356
           + ++ F  +   +    K      +   L  ++    I  + +L+  +
Sbjct: 403 A-TLFFLTYHFINIFAEKSAVEGAFPTWLGAWMGTLIIFPLGILLTYR 449


>gi|226355960|ref|YP_002785700.1| permease YjgP/YjgQ [Deinococcus deserti VCD115]
 gi|226317950|gb|ACO45946.1| putative permease YjgP/YjgQ; putative membrane protein [Deinococcus
           deserti VCD115]
          Length = 381

 Score = 81.2 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/387 (12%), Positives = 108/387 (27%), Gaps = 38/387 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+   +    L   L    +            ++     L ++ +   Y +P  
Sbjct: 1   MTRLTRYVTAELIPPLLAGTLLFTAVLSFGYFFISSQWLA--GVPLGLVSRWIAYQVPDT 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P    + T      M+   EL+ + + G     + +PV  +A L++         
Sbjct: 59  LVKVFPMAIVLMTVVAFGRMSTERELVAVQSGGIGLGRVARPVALVAGLVTALALWLSLW 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I PK     + L   A      S L                S  +    L+G+ +     
Sbjct: 119 IAPKANVETRGLYWDALTGAGLSQLVGKTVDLGGGLTLALASYDSATRELRGVRVEKWNA 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS----------PISKDISIMKFKSYTLQT 230
               +     +     +   + L+  +V+             P +  ++  +       +
Sbjct: 179 DAPRRATLIFADKGTFENNQLALSGYQVYTVDYEAASELNRVPENDPLAFREAVQNVFPS 238

Query: 231 ESANSSTIVLKANDQNLS--------------------FLLNPNPNNPNYRPELLETYRS 270
                 T      D  LS                     L+      P  +    +  R 
Sbjct: 239 VVIPEKTTDTLKVDTGLSRKQTLAQYADAIGADSEGWPELITALTA-PGVKASERQAARV 297

Query: 271 EFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE 330
             +++L      ++  L ++  A +            + I+L I+   +  F   +    
Sbjct: 298 NLNRKLALPFANLVLALSALPFALRFGRT----LGVSLGIALLIAVAYYLLFFVGLTVAS 353

Query: 331 QNPYYI-PILYLFLFCISSIFLLMIKK 356
             P      ++L     +   L M+++
Sbjct: 354 AMPAVPEVGVWLANIVFAVAGLWMLRR 380


>gi|317051998|ref|YP_004113114.1| permease YjgP/YjgQ family protein [Desulfurispirillum indicum S5]
 gi|316947082|gb|ADU66558.1| permease YjgP/YjgQ family protein [Desulfurispirillum indicum S5]
          Length = 342

 Score = 80.8 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/353 (13%), Positives = 126/353 (35%), Gaps = 19/353 (5%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+LR     F  +   +  I     +++  +       SL  L +++   +P+   + 
Sbjct: 6   QRYLLRECFFYFFAALASLSLIMASNSLIRMGSSTLEKGISLMSLAQLTLLSLPSTAFIT 65

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +    + +++NR+ E++I+ + G S   ++K +LF + +++     +  ++ P 
Sbjct: 66  IPVSALIAAMALSSALNRSNEMVILYSAGISPFGIMKVILFASTVITGIAIANSFVLAPL 125

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTH 184
               I+ + A     +++  +   +F +L D              L      D    Q  
Sbjct: 126 ASKQIQHVYADMAENVSYRVILPGVFNKLGDTTLFYY-------HLGREGFHDVMVAQGD 178

Query: 185 KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
            +  A+SGS+    ++++L            +  S  +F  + +  E+A  S        
Sbjct: 179 LVLSARSGSLVQGDESMVLLL-RDGTIVDARQGQSFTRFAVHEIPLETAVDSLR------ 231

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
                L     +    R         E HKR    +  ++FG++  +   +     +   
Sbjct: 232 -----LSYSMMSVEQLRQLKGSKAILEIHKRYALSVSTLLFGVLGFMLGARGGRSGKGAS 286

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +    + +   + +     + +      P  +  +   +    ++F+    ++
Sbjct: 287 VLTSLMVVLAFYLIRAIGVHSMDAGLIAPQQVEWIGPGVMAAVTVFVYFRFRR 339


>gi|167626384|ref|YP_001676884.1| hypothetical protein Fphi_0162 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596385|gb|ABZ86383.1| conserved membrane protein of unknown function [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 360

 Score = 80.8 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 121/358 (33%), Gaps = 12/358 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 2   ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQQAYSQGLGIDSIIKFVILTIPGNVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  +     L+I  F++   I 
Sbjct: 62  LVAPIAIFLAIVICFGKYFANNEMFVTLAGGVTWMQIVKNTMKPVYALTIITFLTVMYIN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  + T     A        S + ++   +  D   I I   + N        + + ++ 
Sbjct: 122 PLSKQTQDIYQASLTAKALLSSITDDKIIKTTDGKVIYIKSKSGNTLKDVFLYMATDNSD 181

Query: 183 THKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +K+  A    + +D+ A     +D  ++ K P + + +    K+        +      
Sbjct: 182 EYKVVTAPVAEVIIDKGAAYVDFHDAHIYTKEPKTYEHTYDTAKNAIYTIFDTSDRDYNH 241

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D+    L            +     R EF  R+   +  ++    S++A     L  
Sbjct: 242 DKVDR----LYMHTLIENFTDKDDGTVSRGEFFGRINNSISVIVA---SLLALALCRLRP 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
           ++ K   +  S+ +   V+   +  ++ +         +  +L         +  I+K
Sbjct: 295 RQNKYAKLLPSVVV-LAVYLCSNMFVNTLMTGGKLPVWIGLWLPHIFFIIYAIRTIRK 351


>gi|238750167|ref|ZP_04611670.1| Inner membrane protein yjgP [Yersinia rohdei ATCC 43380]
 gi|238711711|gb|EEQ03926.1| Inner membrane protein yjgP [Yersinia rohdei ATCC 43380]
          Length = 364

 Score = 80.8 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 125/361 (34%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  + +LI   L LA+  S    ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIIAALILAVATSALAAVNTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+   + + L    F   +D                 +F+   R   
Sbjct: 122 PWSSKHQDEVLNDARANPSLAALAGGQFKSSNDGSSALFIGNVSGKEFNRVFLAQLRPNG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G  +  + + +D  I  F  Y           
Sbjct: 182 NQRPSVIVADSGHMTERPDGSQVVTLNKGTRYEGTALLRDFRITDFVDYQAIIGHKEVQQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A   N+  L   N  +           R+EFH RLT  +  VI  L+         
Sbjct: 242 NNTVAEQMNMKQLWRSNEPDA----------RAEFHWRLTLIVSVVIMALL---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   S +      +    P+++++      + L +I   
Sbjct: 289 INPRQGRVLSMLPAMLLYLIFFLLQSSLRSNA-SSGKLDPLVWMWTVNGVYLALAVILNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|297565136|ref|YP_003684108.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
 gi|296849585|gb|ADH62600.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
          Length = 346

 Score = 80.8 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 112/361 (31%), Gaps = 19/361 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R +G + L     IV       + + +  +        ++ +   + +P  
Sbjct: 1   MSPLDRYLWREVGAAVLGGLAVIVLAFIGGYLYEVLAPLLQRGADPWVVAQYLAFRVPDA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P         VL+ M   +EL      G S + ++ P+L LA +L I   +    
Sbjct: 61  LVRGLPIAMLFALLLVLSRMGEESELKAFLAGGISPLRVLFPLLLLAAVLFISGVLIGES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I PK   + + L  +A      + L     F       + + + +         I     
Sbjct: 121 IAPKATQSGQSLLRQAVFQKPRALLAPGSTFTDAYGRILYVGQADEGGIGGVRVITAEE- 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                     S     +   ++L  G        S+  ++ +F+  T+      +     
Sbjct: 180 -------ILLSERAHFEGGQLVLEGGSRVTY-AGSRPRTVARFERGTVPLVEL-AQDAPG 230

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +   L+ L +                 + ++++  +            V A   +   
Sbjct: 231 GLSALTLAELHSRIRQY-RQSGLPYHAELTAYYRKWAEPAAAFA----FTVFAVGLSFFL 285

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMIKK 356
                +   + + +    ++    +   + +     P+L  +    L+ ++   LL + +
Sbjct: 286 LGGSRNLGMVGVVVLTFFYYATWSVGRIMGEAGALPPLLAAWGPGTLYAVAGAVLLGVGR 345

Query: 357 K 357
           +
Sbjct: 346 R 346


>gi|238761816|ref|ZP_04622790.1| Inner membrane protein yjgP [Yersinia kristensenii ATCC 33638]
 gi|238699930|gb|EEP92673.1| Inner membrane protein yjgP [Yersinia kristensenii ATCC 33638]
          Length = 364

 Score = 80.8 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 125/361 (34%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  + +LI   L LA++ S    ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALITSALASVNTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+   + + L    F    D                 +F+   R   
Sbjct: 122 PWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVTGKEFNRVFLAQLRPNG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q +ILN G  +  + + +D  I  F  Y           
Sbjct: 182 NQRPSVVVADSGHMIERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQEVQQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A    +  L + N  +           R+EFH RLT  +  +I  L+         
Sbjct: 242 NNNVAEQMTMKQLWDSNKPDA----------RAEFHWRLTLIVSVIIMALL---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   S +           P+++++      + + +I   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSNA-SGGKLDPLIWMWAVNGVYLAVAVILNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|328675790|gb|AEB28465.1| Permease YjgP/YjgQ family protein [Francisella cf. novicida 3523]
          Length = 360

 Score = 80.8 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 119/358 (33%), Gaps = 12/358 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ + K     IP  + 
Sbjct: 2   ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYSQGLGIDSIAKFVILTIPENVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  L   + L+I   I+   + 
Sbjct: 62  LVAPIAIFLAIIICFGKYFANNEMFVTLAGGITWMQIVKNTLKPVVALTIITLITVMYLN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  + T+    A        S + +    +  D   I IS  + N         ++    
Sbjct: 122 PLSKQTLDIYRASLSAKALLSSITDKKIIKAPDGKIIYISNKSGNTLSDVFLYQNTPQDG 181

Query: 183 THKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +K+  A +  I  D+ A      D  ++ K+  + + S    K         +      
Sbjct: 182 EYKVMTAPTAKIVSDKTAAYIDFMDVNIYTKNSQNSEYSHDNAKKAIYTIFDNSDRDYNH 241

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D+    L            +    +++EF  R+   +  ++    S++A     L  
Sbjct: 242 DRVDR----LYMHTLIENFNDKDNGTAFKAEFFGRINNAISVIVS---SLLALALCRLRP 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
           ++ K   +  S+ +   ++   +  I+ +         +  +L         +  I+K
Sbjct: 295 RQNKYAKLLPSVVV-LAIYLCTNMFINTLMTTGSMPVWIGFWLPHIFFIIFAVRTIRK 351


>gi|331007486|ref|ZP_08330657.1| putative permease [gamma proteobacterium IMCC1989]
 gi|330418710|gb|EGG93205.1| putative permease [gamma proteobacterium IMCC1989]
          Length = 362

 Score = 80.8 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 107/364 (29%), Gaps = 9/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    YI R    S L+  L I  +  + +++  +  ++    +    L      IP+ 
Sbjct: 1   MRLLNAYIFRTTVVSILVVLLVITALDILAKLIDELGNLT-PAYTFAEALIYVVLAIPSS 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                PF   +     L S+   +EL+++   G S + L   VL   +     + +    
Sbjct: 60  FYQYMPFAGLVGGLVGLGSLASTSELVVMRAAGVSLLRLTWAVLKPVLWFIAAMLVFAEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   +        +   +   +  +  L++  +    N  L G+      D
Sbjct: 120 VIPVSDQYAESRRSALLQGGNTALSAKGGVWNREGTLFMHFNSVQANGKLLGVTRYQYDD 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS-------YTLQTESA 233
            Q   +      ++         N  E       S         +       +  +    
Sbjct: 180 KQRLTLASFAETALYTADGWREENVVETRFLDAQSSSDKEALITTATYPSRPWQTELSPN 239

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             + +V   ++  ++ L +        +      Y   +  ++ Q L  +   L++I   
Sbjct: 240 LLTILVQDTDNLAITKLYD-YAQYLEKQNLDNGKYLLAYWGKVLQPLVIISLVLVAISFI 298

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                           + + I F +          +        +L   LFC      L+
Sbjct: 299 FGPLREVTMGYRIFTGVVVGIVFQLTQKLLGPASLLYGISPLFAVLLPILFCFGVGLFLL 358

Query: 354 IKKK 357
            + +
Sbjct: 359 ARTR 362


>gi|319408319|emb|CBI81972.1| conserved membrane hypothetical protein [Bartonella schoenbuchensis
           R1]
          Length = 363

 Score = 80.8 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 110/355 (30%), Gaps = 13/355 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      ++     L I  +A +I   +    ++S    +    L IS   +P ++
Sbjct: 5   TLGRYFFVRYIKTTCYFVLSIFILALLIDFTENSGRLASLPHYTAKGALLISALRVPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF        +L S+N+  EL++  + G S    + P    A L  +F  +  N +
Sbjct: 65  QQLFPFIALFSAMTMLISLNKKFELVVARSIGVSAWQFLIPACLGAFLFGLFSILFINPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----LYIKISKYNPNNTLQGIFIV 176
                S  +++ A+ +     + + +N    L          I                 
Sbjct: 125 AAWGSSQAEKMIAEWRSNNVQTSINKNRIPWLTQHTNLGTTTIGARSITQQGLSLIDATF 184

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              +       +  +    L   A +L +G +++   + +  +  + K+     +    +
Sbjct: 185 VQYNDNATVKNWIHAKQATLTNDAWLLTNGTIYKTGYVPEKFTEFRIKT---NLKPEFLT 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +          L        ++       +       +      V   LI+   +   
Sbjct: 242 EYLADPATIPFYKLPRKISAARSF-GYSANKFDMYLQSLIALPALLVAMTLIAATVSL-- 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              R  +    I   +   F ++   S ++       Y  P++  +   + ++F 
Sbjct: 299 KFTRFGQSKALILGGVIAGFMLY-VISVLVQAFGNAGYIPPVIAAWTPVVIALFF 352


>gi|296283031|ref|ZP_06861029.1| permease [Citromicrobium bathyomarinum JL354]
          Length = 365

 Score = 80.8 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/350 (11%), Positives = 107/350 (30%), Gaps = 6/350 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
           ++  LY+ +          + +V +  ++ +L     +      +   L   +   +P +
Sbjct: 9   RTLTLYLAKMFSLRIFAVLVMLVLVLMMLDLLSNSGQILEVPGNTEADLWLYASLRVPML 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P+   + T   L ++N+N+E++ +   G S   ++ P++  A+L++   F     
Sbjct: 69  IQRFLPYSVLLATIITLVTLNQNSEVIAMKAAGLSAHQVLAPLIVTALLVAGISFAFNER 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP--NNTLQGIFIVDS 178
           +  +  + +    A    AL      +   +  D    +    Y+               
Sbjct: 129 VVTRATAQLTAWEATEFGALPDKPKSKGSIYLEDGQNILTARSYSGGGPAPTLRDVTYYR 188

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           R           +           + +      +  +  ++     +       A     
Sbjct: 189 RSPTAEITQKVDAPMAVHGPDGWAMQN--PSVFTVGTASLAQPSQLTVAPGITPATIELQ 246

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            +    Q    L +             E   + +  +++  L  V+  ++  VA    A 
Sbjct: 247 EIDPTTQPFWQLGSSIEAY-RQAGRDTEELEANYWHKISGPLAAVLMPILGAVAGFGLAR 305

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
             Q      I ++L  ++ V    +  +      P ++     FL  +  
Sbjct: 306 SGQLFMRALIGMALGFAYFVIDNAALAMGDFGGYPPFLAAWAPFLLFLMI 355


>gi|56708376|ref|YP_170272.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670846|ref|YP_667403.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134302361|ref|YP_001122330.1| YjgP/YjgQ permease [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|224457506|ref|ZP_03665979.1| YjgP/YjgQ permease [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370999|ref|ZP_04987002.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875199|ref|ZP_05247909.1| permease yjgP/yjgQ family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604868|emb|CAG45952.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321179|emb|CAL09335.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134050138|gb|ABO47209.1| putative permease YjgP/YjgQ family [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569240|gb|EDN34894.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841198|gb|EET19634.1| permease yjgP/yjgQ family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159995|gb|ADA79386.1| putative permease YjgP/YjgQ family protein [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 360

 Score = 80.8 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 112/356 (31%), Gaps = 8/356 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 2   ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYSQGLGIDSIVKFVILTIPENVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  L   + L+I   I+   + 
Sbjct: 62  LVAPIAIFLAIVICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTIITLITVMYLN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  + T+    A        S + +    +  D   I I   + N         ++    
Sbjct: 122 PLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIYIGNKSGNTLSDVFLYQNTPQDG 181

Query: 183 THKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +K+  A +  I  D+ A      +  ++ K+  + + S    K         +      
Sbjct: 182 EYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYTIFDNSDRDYNH 241

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D+    L                 Y++EF  R+   +  ++     +  A  R   R
Sbjct: 242 DRVDR----LYMHTLIENFNDKNNGTAYKAEFLGRINNAISVIVSS--LLALALCRLRPR 295

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           Q K    +   + ++  +             +       +L     +   +  I+K
Sbjct: 296 QNKYAKLLPSVVVLAIYLCTNMFINTLMANSSVPVWIGFWLPHIFFTIFAVRTIRK 351


>gi|88802489|ref|ZP_01118016.1| hypothetical protein PI23P_07865 [Polaribacter irgensii 23-P]
 gi|88781347|gb|EAR12525.1| hypothetical protein PI23P_07865 [Polaribacter irgensii 23-P]
          Length = 351

 Score = 80.8 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 107/351 (30%), Gaps = 6/351 (1%)

Query: 13  GRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLK-ISGYLIPTVLPMVTPFCFA 70
             +FL + L ++ IA  I + ++I+         ++ +L       I        P    
Sbjct: 1   MVTFLFTLLILIPIAIAIDVSEKIDNFLEHPNLGISEVLNDYYINFIIYYSNTFMPLALF 60

Query: 71  METTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK---CRS 127
           +      + ++ NTE++ I N   S    + P    A L+++      + + PK    R 
Sbjct: 61  IAVILFTSKLSSNTEIIAITNAKVSFTRFLYPYFIGASLVTLLSLAMNHYVVPKSSKIRK 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSRDTQTHKI 186
             ++    +           N   +L D  YI I  +N  N +   F        +    
Sbjct: 121 GFEKKYINSSKQSNALKYVSNFSLQLTDSTYIFIRSFNTANNMGYDFNSETYDGIKLISK 180

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             + +   +       L              I             + +       A +  
Sbjct: 181 LSSDNIMYNPKDSTFTLTGWRKRLIYEKRDRIFSGNKLDTVFNFSTKDLVYKSAFAQEMP 240

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
              LL     +     + L  Y  EF+KR +  +   I  +I++  + ++        + 
Sbjct: 241 SGELLKYINISKKRGVKNLNAYLVEFYKRTSLPIASYILTIIAVGLSFRKKRGGTGVNLA 300

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                + +          +      +      +   +F + +I+L +  +K
Sbjct: 301 IGVGIMFLYVFFMKVGEVLGSVAGVDSLAYVWIPNIIFGVVAIYLYLNGRK 351


>gi|261342656|ref|ZP_05970514.1| inner membrane protein YjgP [Enterobacter cancerogenus ATCC 35316]
 gi|288315304|gb|EFC54242.1| inner membrane protein YjgP [Enterobacter cancerogenus ATCC 35316]
          Length = 366

 Score = 80.4 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 56/371 (15%), Positives = 130/371 (35%), Gaps = 23/371 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVKILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGIIAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  D   +   +    N    +F+   R   
Sbjct: 122 PASSRHQDEVLAEAKANPGLAALAQGQFQQASDGNSVLFIESVDGNRFNDVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGQLSQRKDGSQVVTLNKGTRFEGTAMLRDFRITDFQNYQAIVGHQTVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   N+  L+  +           +  R+E H R+T      +  L+ +  +    
Sbjct: 242 DPTDTEQMNMRTLIATD----------SDRARAELHWRITLVFTVFMMALMVVPLSVVNP 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY--LFLFCISSIFLL--- 352
              +   + P  +   + F +         K + +P     +   L+L     + L    
Sbjct: 292 RQGRVLSMLPAMLLYLVFFLLQTSIKSNGGKGKIDPAIWTWVVNGLYLLLAVGLNLWDTV 351

Query: 353 ---MIKKKYTK 360
               I+ ++T+
Sbjct: 352 PVRRIRARFTR 362


>gi|145219916|ref|YP_001130625.1| permease YjgP/YjgQ family protein [Prosthecochloris vibrioformis
           DSM 265]
 gi|145206080|gb|ABP37123.1| permease YjgP/YjgQ family protein [Chlorobium phaeovibrioides DSM
           265]
          Length = 441

 Score = 80.4 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 89/264 (33%), Gaps = 13/264 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+     F  + L I+F+  +       +           L+++       +
Sbjct: 1   MKLIDRYILKAHVGPFFFAFLTIIFVLILQFFASFADRFIGRGIGFGALVELIALQSAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +       ++   +E+ +   +G S   L+ P+L   ++LS F+    N+
Sbjct: 61  VGLAAPMAVLIAVVMAFGALTTTSEMTVFRASGVSLYRLMIPILLAGLVLSFFVERFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
           ++P      + L      A     + EN F  L D   I + K +     +  I I DS 
Sbjct: 121 VQPLANYQARSLMDDIVKAKPNFGITENAFSPLVDGYSILVRKSDERTGGIGDIIIYDST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAII----LNDGEVHRKSPISKDI--------SIMKFKSYT 227
                 +  A+ G I            L +GE+H        +            F+S  
Sbjct: 181 RPDFRSVITAEEGRISFSDDGGYLLLTLRNGEIHEVQQPDYRLYRKMSFQQHRYVFESTG 240

Query: 228 LQTESANSSTIVLKANDQNLSFLL 251
                ++         + +   LL
Sbjct: 241 FGFSRSDDRRNRAGGKELSAKELL 264



 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 4/101 (3%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           L     N +    ++  + +E+HK+         F L+            +R       I
Sbjct: 328 LQSELTNRDVNQGMVNRFMAEYHKKYALAFACFFFVLVGAPLGILA----RRGGFGIGAI 383

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                F ++W       K+       P   +++       +
Sbjct: 384 LSLFFFVLYWILMIAGEKMAVRGVLEPWAAIWMADAVMAAI 424


>gi|291514071|emb|CBK63281.1| Predicted permeases [Alistipes shahii WAL 8301]
          Length = 500

 Score = 80.4 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 96/239 (40%), Gaps = 6/239 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+    +L+      +++   ++F+  +  + + I+ +     S  I++++  Y +  +
Sbjct: 1   MKTIHRLVLKSYLGPMVLTFFIVMFVLMMNIVWRYIDELVGKGLSAGIIIELMTYFMANM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    +     + ++  N ELL + + G S + + KP++ L  L+S+  F   N 
Sbjct: 61  IPMGLPLSMLLAAIMTMGNLGENYELLAMKSAGMSLVQITKPLIILVSLVSVGSFFIGNN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +       +        ++ LFF   D++ I++S   P+  L    ++    
Sbjct: 121 LVPNANKKLFSTLYDIRQQKQALEFQDGLFFNGIDNMSIRVSHQEPDTHLLHDVLIYDNR 180

Query: 181 --TQTHKIYYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
                     A SG I L          L  GE + ++  S+  +    + +T   +  
Sbjct: 181 AANGNMNTIVADSGYIRLSDDKKYLLVTLFHGETYEQTRNSQWFTKSALRHHTFDLQKQ 239



 Score = 42.3 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 53/150 (35%), Gaps = 6/150 (4%)

Query: 210 RKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ--NLSFLLNPNPNNPNYRPELLET 267
                 +D   +      +   +     +  +A     N   +   + +        L  
Sbjct: 307 SLQVDKRDFRDLLATDSVIMLPTRERERVWNQARTLAKNSRNMFAFDESTAKEALNQLYR 366

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            + E+HK+++  +  +IF LI    A   A++R+     P+ +S+      +        
Sbjct: 367 SKVEWHKKMSLPVSILIFFLIG---APLGAIIRKGGLGLPVVVSVIFFVIYYMISLSGEK 423

Query: 328 KIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
             ++  +  +  ++L  F ++ I + +  K
Sbjct: 424 LAKEGNWEAVYGMWLSTFILTPIAIYLTYK 453


>gi|91214820|ref|ZP_01251793.1| putative permease [Psychroflexus torquis ATCC 700755]
 gi|91187247|gb|EAS73617.1| putative permease [Psychroflexus torquis ATCC 700755]
          Length = 516

 Score = 80.4 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 65/192 (33%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL    ++FL     ++ I  +  + + I   +     L I+ +   +L+P +
Sbjct: 1   MKILDRYILVSFVKTFLSVFTILMLIFILQSVWRFIEEFAGKDIDLEIISRFLLFLLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PMV P    + +     S     E   + + G S    ++ ++   +LL    F   N 
Sbjct: 61  IPMVLPLTILLTSIMTFGSFAEQYEFAAMKSAGISLQRAMRSLIVFILLLGAVTFYFANT 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +  +            + E  F  + +       K  P+       I+  + 
Sbjct: 121 VIPYAEGKVLNMRKNIAQVKPSLAIIEGAFNDMGNINIKVNKKSGPDGRNLDDVIIHKKS 180

Query: 181 TQTHKIYYAQSG 192
                 Y     
Sbjct: 181 ENRVGNYTVIKA 192



 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/113 (11%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
           +++  +    N    +  LL       H +       +I   +    A   A++R+    
Sbjct: 374 SITPQIISKKNQFKRKEILLNKIEMAMHSKYALPFACIILFFVG---APLGAIIRKGGLG 430

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
            P+ I++ +     +   +  +   +     P L  +L    +  + + +  +
Sbjct: 431 LPMVIAVIVFLTYHFIGLFAGNSA-EGGSLSPFLGSWLSTIILFPLSIYLTYR 482


>gi|332297891|ref|YP_004439813.1| permease YjgP/YjgQ family protein [Treponema brennaborense DSM
           12168]
 gi|332180994|gb|AEE16682.1| permease YjgP/YjgQ family protein [Treponema brennaborense DSM
           12168]
          Length = 366

 Score = 80.4 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/360 (12%), Positives = 115/360 (31%), Gaps = 5/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+ R     F+ +  F   +  ++++L  +    S+      ++++    +P  
Sbjct: 11  MTLLS-YLYRRFMPVFIGALSFFSLVLILVELLMNLWQFISAQVPAADIVRVMLLYVPKT 69

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P      ++ VL+      EL  +  +G S      P+L  +++LS F+F  E+ 
Sbjct: 70  VSFALPLAILFASSYVLSDFYAKNELTAVFASGVSLFRFTLPLLVFSVVLSAFMFFFEDR 129

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +     +   +L  K          +  +       +  K   Y+   +         R+
Sbjct: 130 VVVPAYAQKTELQQKLLNQEKSKNNDRIVVIAERGAVVYKADFYDDQASRLFTLYAVVRN 189

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                    ++ S   +  +  L+    +     +        +   L TE   +     
Sbjct: 190 GDKSLRAVLRADSAVWNGSSWTLSGAVQYTMRGDTLIAEDPDPEITALLTEPPETFRNNT 249

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            + +   +        +            S+++K+ +      I      ++       R
Sbjct: 250 VSVETVTASEARSYITHLRRAGLPTAEALSQYYKKFSFPFVVFIVV---FLSVGLSGKTR 306

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           +   +  + + +  +   F+    +   + +  Y  P+   +   I  IFL  +  K+ +
Sbjct: 307 KNVLLISLVLCIGAAVA-FYVTQMVTMLLAKFGYISPLAGAWFPVILFIFLSGVLLKFAR 365


>gi|283778149|ref|YP_003368904.1| permease [Pirellula staleyi DSM 6068]
 gi|283436602|gb|ADB15044.1| permease YjgP/YjgQ family protein [Pirellula staleyi DSM 6068]
          Length = 395

 Score = 80.4 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/397 (12%), Positives = 119/397 (29%), Gaps = 47/397 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      ++  I + F ++ + +     ++ + Q+  L          +L++  Y++P  
Sbjct: 1   MPVIVRQVVWDILQWFTIAIVSLTVFMMLVFVGQQARL---YGLGALAILRLIPYILPNA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P         V   M+ + E++ I + G S + ++ P L LA LLS+      ++
Sbjct: 58  LAFAVPGSILFTVCVVYGRMSSDNEVVAIKSMGISPMVVVWPSLALAFLLSLVAVWLNDV 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                 + ++++  ++   +    +             I +        ++ I      +
Sbjct: 118 AFSWGVTGMRRVVLQSVEEIC-YGMLRTQRSYSGPTFQIIVKDVEGRKLIRPIMTFSENN 176

Query: 181 TQTHKIYYAQSGSIDLD-----------------------------RQAIILNDGEVHRK 211
                   A    +  +                              + I L D    R 
Sbjct: 177 DMPAFTLRATEAELRSNLQRNTLVVVLTDCEIDFSNGARVSSPGIVEREIKLEDATHKRV 236

Query: 212 SPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLL------------NPNPNNPN 259
              S     ++  S  ++ +    + +      +    L+             P      
Sbjct: 237 GGDSPTNLPLRQISSEVELQEIEITKLEQSLAAETGMNLMTGNFFELSPDAWQPKKKKLE 296

Query: 260 YRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
                L   R+E  +R +     + F +I    A               F+ + I +  F
Sbjct: 297 TARTRLYRLRTEPWRRWSNGFACLAFVMIGTPLAITLRNSDWMSTFGRCFLPILIGYYPF 356

Query: 320 WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             F+    K    P Y   +++     +++   +IKK
Sbjct: 357 LAFALEKAKSGDLPPYS--IWIANIACAAVGYWLIKK 391


>gi|262341091|ref|YP_003283946.1| putative YjgP/YjgQ family permease [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272428|gb|ACY40336.1| putative YjgP/YjgQ family permease [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 381

 Score = 80.4 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 147/371 (39%), Gaps = 19/371 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LY++R     F +    I  +  +     +I+ ++    ++ I++K   Y   +++
Sbjct: 5   KKLDLYMIRLFITPFFIIFSTIFAVFMIQFFWSQIDELTGKNINILIIIKFVFYFGISII 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+VTP    + +      ++ N EL+ I ++G S   ++KP+L +  +LSI L+   ++ 
Sbjct: 65  PLVTPISLLLTSIITFGHLSENQELIAIKSSGISLFRVMKPILGITCILSIGLYFFSDLA 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK     K+L  K         L+E +F  L  D +IKI +               ++ 
Sbjct: 125 IPKAIKQAKKLGYKISSTHPSFKLKEGIFVNLLPDFFIKIDRKKNQQLHNIFIFFYDKNL 184

Query: 182 QTHKIYYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISI--MKFKSYTLQTESANS 235
             + I   +   I    Q+      L +G ++ ++   +  S   ++F +     +    
Sbjct: 185 LVNTILSQKGFFIPNKDQSEFIQFKLINGILYSENTNKEQSSYQIVQFDTLIQNFQIPFY 244

Query: 236 STIVLKANDQN---------LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
             I    + ++         ++ L      +       L   + E  K+ T  +  +I  
Sbjct: 245 EEIKNLDDYESYNTQNLIQKINLLKKEKSKHQKENIHKLAKLQLELQKKFTFPVTCIIMF 304

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFC 345
           L     A   A++R+    +P  I+L+I    +   +   +K+E+   Y  I  ++  F 
Sbjct: 305 LTG---APLGAIIRKGGIGYPTMIALAIFIIYYTLLTITQNKVEKVEIYPWIGAWIPNFI 361

Query: 346 ISSIFLLMIKK 356
              + + M  K
Sbjct: 362 FFPVSIWMTYK 372


>gi|42526553|ref|NP_971651.1| hypothetical protein TDE1043 [Treponema denticola ATCC 35405]
 gi|41816746|gb|AAS11532.1| membrane protein, putative [Treponema denticola ATCC 35405]
 gi|325473491|gb|EGC76686.1| membrane protein [Treponema denticola F0402]
          Length = 377

 Score = 80.4 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/369 (15%), Positives = 125/369 (33%), Gaps = 10/369 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K+  +Y+ + +   F++S LF  FI +V QIL     + S       +L +  Y +P ++
Sbjct: 9   KTIFVYVFKELLLYFIVSFLFFFFIFFVNQILLMAEEILSKKAPTKDVLLLLFYSLPFII 68

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P+   + T   L   + + E + ++  G S   ++ PV  L + +S+  FI+ +I+
Sbjct: 69  ATTAPYAALIGTLMCLGRFSADHEFISMNALGISTSFILIPVFALGVFVSVGSFITNDIL 128

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+      ++      +     LE     R ++ + +     + +     I     R  
Sbjct: 129 IPRGTIKFNEVLYNIASSTPALELESYSVKRNENSIVVSGLIKDNSIHDLLIIDSSQRGA 188

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRK------SPISKDISIMKFKSYTLQTESANS 235
           +              DR  I+  +    R       +    D+   +  +Y +  +    
Sbjct: 189 KRFLSSSQTDVKKSNDRSIIMQLEMLNPRLLNLDLNNRSKFDVVYGESITYNVLAKDVAP 248

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRP----ELLETYRSEFHKRLTQWLFPVIFGLISIV 291
             I     D+  S+ L  +             LL  Y  E H++ +       F L++  
Sbjct: 249 KFISSSGPDKMTSYDLIKDIKQKKEAGDTSPRLLNIYIMELHRKFSVPFGAFFFVLLAFA 308

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            +       Q        +     +    G   +  +   N     +++     +     
Sbjct: 309 ISRAGKTYDQSTGFIVGLLISVAYWAFLIGGQMLCLESGLNINGALVMWFPNVLLVICTA 368

Query: 352 LMIKKKYTK 360
           ++  K+  K
Sbjct: 369 VIAIKRLLK 377


>gi|227821475|ref|YP_002825445.1| permease YjgP/YjgQ family protein [Sinorhizobium fredii NGR234]
 gi|227340474|gb|ACP24692.1| permease YjgP/YjgQ family protein [Sinorhizobium fredii NGR234]
          Length = 360

 Score = 80.4 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 117/353 (33%), Gaps = 8/353 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPT 59
           + +   Y  +    +     + I  + ++I   +  + +S+    +++  L ++ + IPT
Sbjct: 3   LSTLGRYFFKRYIVTTFWFLVGIFALIFIIDFSELASRMSALPHYTVSGALLMTTFRIPT 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +L    PF         L S+NR  EL++    G S    ++P +  A L+ +   ++ N
Sbjct: 63  ILQQTVPFVALFSAMAALISLNRRYELVVTRAAGISVWQFLRPFVLGAFLVGVLAVVALN 122

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            +        + L A+   + +          ++ D     I   +  N    +  V   
Sbjct: 123 PLAAWGTKRAEALEAEWGSSRSAQSSSIPWLRQIYDGTDTIIGARSVQNGGTELINVTVI 182

Query: 180 DTQTHKIYYAQS-GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                     +             L +G     +   +    ++        ++      
Sbjct: 183 HFDPQGTITLRQDAKSAKLEDGYWLLNGVTESGN--GRLPRRLETVQLRTNLKADFVQER 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           + KA+      L +             +   ++ H  L+  L  V   LI+   + K + 
Sbjct: 241 LAKADSIQFFDLPHK-IEVARSFGFSTDAMETQLHSLLSLPLLLVAMTLIAACVSLKFSR 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             Q +    + +   +S  V +  + ++     +    P +  +L  + ++ L
Sbjct: 300 FNQSR---SVILGGILSGFVLYVVTVLVKAFGSSGIVPPFVAAWLPVVVAMAL 349


>gi|328948913|ref|YP_004366250.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
           2489]
 gi|328449237|gb|AEB14953.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
           2489]
          Length = 356

 Score = 80.4 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 109/356 (30%), Gaps = 1/356 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L+     F+ + +F V +  +  +   +    S   S   +  I  Y IP  
Sbjct: 1   MKLVF-YMLKRFFPVFIGAVMFFVLVLCLTDLFMNLWNYISKNVSSRDVALILIYYIPKA 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P      T  +L+      ELL +  +G S      P+L +A+ +S  LFI E+ 
Sbjct: 60  VWYAVPIAMLFATAYMLSDFYARNELLAVFASGISLFKFSVPLLTVAVAMSFALFIFEDN 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I     S   QL              + +      ++  K   +N          V  R 
Sbjct: 120 IVVPSFSKKTQLQESVLSKEKSLNNSKIVIMAEGGNVIYKADFFNNKAESLSKLYVLFRT 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                     +        +  L +   ++    +    +++ +      E   +     
Sbjct: 180 EDKKPDAVVYAQKAFWKNNSWKLENAVEYKFQDENFLACVLEKRLEERLLEPPETFRNNT 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            + ++  +        +           +S ++K+ +      I   ++I  + K     
Sbjct: 240 ISVERVNTKEAREYIEHLEKAGLPSAEEKSVYYKKYSFPFVVFIVVFLAIGLSGKTRKNV 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               +     ++ + +        +       P +     + LF I S  LL   K
Sbjct: 300 LLVSLAMSITAVVLFYVFQMVTMLMAKFQAIPPLFGAWSPVVLFIIISCVLLKYAK 355


>gi|218672883|ref|ZP_03522552.1| putative permease protein [Rhizobium etli GR56]
          Length = 340

 Score = 80.4 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/342 (12%), Positives = 110/342 (32%), Gaps = 10/342 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y  R    +     + +  I++++   +    +S     ++   + ++   +P +L
Sbjct: 5   TLSRYFFRRYLATTGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLPLIL 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF        VL  +NR  EL++    G S    + P +  ++ L +    + N +
Sbjct: 65  QQTIPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGLLTMTALNPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
               +     + +  +           + +         +          G  +VD+   
Sbjct: 125 AAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLVDAVLI 184

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                  +    +  D     L DG       + +    +  +  ++Q  +      V +
Sbjct: 185 HFDS---SGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241

Query: 242 ---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A +    F L+             +   ++F+  L+Q L  V   LI+   + K + 
Sbjct: 242 RLTAPETIGFFDLSNRIAAAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSLKFSR 301

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
             Q +   P+ +   +S  + +  + ++     +    P + 
Sbjct: 302 FNQSR---PVILGGILSGFMLYVITVLVKAFGSSGVVPPFVA 340


>gi|123440874|ref|YP_001004865.1| hypothetical protein YE0501 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332160137|ref|YP_004296714.1| hypothetical protein YE105_C0513 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122087835|emb|CAL10621.1| putative membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318607297|emb|CBY28795.1| putative permease [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664367|gb|ADZ41011.1| hypothetical protein YE105_C0513 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859699|emb|CBX70035.1| lipopolysaccharide export system permease protein lptF [Yersinia
           enterocolitica W22703]
          Length = 364

 Score = 80.4 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 126/361 (34%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  + +LI   L LA++ S    ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALVTSALAAVNTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+   + + L    F    D                 +F+   R   
Sbjct: 122 PWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVTGKEFNRVFLAQLRPNG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q +ILN G  +  + + +D  I  F  Y           
Sbjct: 182 NQRPSVVVADSGYMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQEVQQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A+   +  L   +  +           R+EFH RLT  +  ++  L+         
Sbjct: 242 NNNAADQMTMKQLWRSHQPDA----------RAEFHWRLTLIVSVIVMALL---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   S +      +    P ++++    + + L +I   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSNA-SSGKLDPSIWMWAVNGAYLALAVILNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|325267812|ref|ZP_08134462.1| YjgP/YjgQ family permease [Kingella denitrificans ATCC 33394]
 gi|324980693|gb|EGC16355.1| YjgP/YjgQ family permease [Kingella denitrificans ATCC 33394]
          Length = 353

 Score = 80.4 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/360 (11%), Positives = 115/360 (31%), Gaps = 7/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y++  +      + L ++ +   I +L           +    ++ +    P  
Sbjct: 1   MKLLSRYLIIRLTVMSAYALLALLALYNFIDLLS--EKTGIGNYTFWHAVQFTLLQTPAR 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +     L+ ++ N+EL ++  +G      I  ++  + + ++   +    
Sbjct: 59  AYLLMPLATLIGGLLALSQLSSNSELAVMKTSGWHISRFIGTIVQFSFIFAVITVLLGEW 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+  S    + + A+     S       +    D  + I    P+ TL  I I     
Sbjct: 119 IAPQLSSYADNMKSTARSGQLSSTRN--GVWIKQPDSMVYIGSMLPDKTLLDISIWHYTP 176

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++  D+    L + +  + +     +     + + + T +     +++
Sbjct: 177 QFRLTEAIHAEKAVMRDQTWQ-LQNVQSSKITEERVIVQKQPARDWHMNTTNQLMDVLLV 235

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    + S L            +    Y   +  +L   +  ++  L+++          
Sbjct: 236 KPEQMSFSALTQ-YIGYLKKNNQQTLAYDVAWWNKLVYPVATMVMALVALAFTPVSGRNH 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F           ++   P ++  + L     + + + +I ++  +
Sbjct: 295 NLGLKLFGGIGLGLLFFFTGRLFGFSAQLYGVPAFLSAV-LPTALFACLAVFLIYRQEKR 353


>gi|240850231|ref|YP_002971624.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
 gi|240267354|gb|ACS50942.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
          Length = 363

 Score = 80.0 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 103/355 (29%), Gaps = 13/355 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   Y      +        I  +A +I   +    +SS    +      +S   IP ++
Sbjct: 5   TLGRYFFIRYLKITCYFWGSIFVLALLIDFTENSGRLSSIPHHTAKDAFFLSVLRIPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+N+  EL++  + G S    + P    A LL +F  +  N +
Sbjct: 65  QQLIPFIALFSAMATLISLNKKLELVVTRSIGVSAWQFLMPACLGAFLLGLFSILLINPL 124

Query: 122 EPKCRSTIKQLSAKAQLAL-----TFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
                S  ++   + +          + +             I                 
Sbjct: 125 AAWGFSQAEKKMTEWRNNNVLTPLHNTDIHWLTQRTNLGRTTIGAKFITDQGLSLLDATF 184

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              +       +  +    L   + +L +G +++     +  ++++ K+     +    +
Sbjct: 185 VQYNDNATVKNWINTPKATLTNGSWLLTNGTIYKIGHPPEKFTVLQIKT---NLKPEFLT 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +          L                 +   F   +      V   LI+   +   
Sbjct: 242 ERLANPATIPFYQL-PKKIMIARSFGYSANNFDMYFQSLIALPALLVAMTLIAATVSL-- 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              R  +    I   +   F ++   S ++       Y  PI+  +   + ++FL
Sbjct: 299 NFTRFGQSRTLILGGVIAGFMLY-VISVLVQAFGNAGYIPPIIAAWTPVVIALFL 352


>gi|156502931|ref|YP_001428996.1| putative permease, YjgP/YjgQ family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|156253534|gb|ABU62040.1| putative permease, YjgP/YjgQ family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 360

 Score = 80.0 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 112/356 (31%), Gaps = 8/356 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 2   ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYSQGLGIDSIVKFVILTIPENVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  L   + L+I   I+   + 
Sbjct: 62  LVAPIAIFLAIIICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTIITLITVMYLN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  + T+    A        S + +    +  D   I I   + N         ++    
Sbjct: 122 PLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIHIGNKSGNTLSDVFLYQNTPQDG 181

Query: 183 THKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +K+  A +  I  D+ A      +  ++ K+  + + S    K         +      
Sbjct: 182 EYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYTIFDNSDRDYNH 241

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D+    L                 Y++EF  R+   +  ++     +  A  R   R
Sbjct: 242 NRVDR----LYMHTLIENFNDKNNGTAYKAEFLGRINNAISVIVSS--LLALALCRLRPR 295

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           Q K    +   + ++  +             +       +L     +   +  I+K
Sbjct: 296 QNKYAKLLPSVVVLAIYLCTNMFINTLMANSSVPVWIGFWLPHIFFTIFAVRTIRK 351


>gi|327398771|ref|YP_004339640.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
 gi|327181400|gb|AEA33581.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
          Length = 348

 Score = 80.0 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 128/357 (35%), Gaps = 13/357 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YIL+ +  SF++S   I  +  +  +++  +L+     S  +LLKI GY +  +
Sbjct: 2   LKKLDRYILKSLIVSFVISFFVIAVVMLIGDLVKLYDLLFGKGSSFIVLLKILGYTVVFL 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +    V + ++ N+E+  I + G S   +  P    ++ + +FLF S   
Sbjct: 62  LAFIVPMALTIAINYVYSDLSNNSEITAIRSCGISLFRVYFPAFLFSVAVFVFLFYSIAF 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK R + +   AK      ++ L+ N+F+   D +    +       L+ +F      
Sbjct: 122 VAPKARLSYRVEIAKTFRNKVYAALKPNMFYDKVDGVMWIKNLSPDKKHLKDVFFAQKG- 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               KI+ A+ G        I+     V   SP         F  Y L   +        
Sbjct: 181 ----KIFLAKKGDFKDIPSGILAEFFNVKMYSPSKSGFEYGSFDRYELAFLTGRGYFKPN 236

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K N + +SF          Y     +      +K ++  +      LI+       +   
Sbjct: 237 KNNTRFMSF----GEVVNYYSKSKSKDALYRINKIVSMSMSVFALSLIAFSFGITFSRSG 292

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +        ++    F +F+    +   +         +YL           +  KK
Sbjct: 293 KSAG----IVASLFLFFMFYIILMLSESLCDATGNPYFIYLPNVVAFVFGSYIFYKK 345


>gi|168704909|ref|ZP_02737186.1| hypothetical protein GobsU_35554 [Gemmata obscuriglobus UQM 2246]
          Length = 366

 Score = 80.0 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 102/363 (28%), Gaps = 13/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST----ESLNILLKISGYL 56
           M + +   L    RS+++  + +V +  VI +   ++   +       S   +    G  
Sbjct: 1   MTAIDRMFLWTFFRSYIIVLISLVGLFIVIDLFTHLDAFVNKPGGFVASARHITYYYGNR 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P    +   F   +     +  M RN ELL + + G      I+PV   A +      +
Sbjct: 61  VPEYFDLFGNFVTLIAGAFTVAWMQRNNELLPLLSAGVPTRRAIRPVFLGAAVTLALGPL 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           ++  + P+    +         A   S +                         +     
Sbjct: 121 NQEFLIPEVADALTSQRDDPDQAKAQSLMGAYDS--SGIHFEGLAGFRKDKLVKKMCVTF 178

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQ------AIILNDGEVHRKSPISK-DISIMKFKSYTLQ 229
                       AQ       +         +L D      +     +++++    + ++
Sbjct: 179 PEHSRSGMVHLTAQEAVFRPKQGDDPLTGGWLLTDATPDTFTGEIPLNLTVLGTGRFFVK 238

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
            + A+   +         +   +      +  P         FH R+T+ L  ++  +  
Sbjct: 239 VQDADYDAVCRGGAWYIYAATSDLQTMLVDPEPRRRGKLAVLFHTRVTRPLVGMVMVVFG 298

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +                   I  + +F       Y+  +    P     L + LF   ++
Sbjct: 299 LAVILGNPNRHVIISSGLCLIVSAATFLFVIACKYLGDQDVLPPPLAAWLPVILFGPPAL 358

Query: 350 FLL 352
              
Sbjct: 359 VAF 361


>gi|226357374|ref|YP_002787114.1| membrane protein; permease [Deinococcus deserti VCD115]
 gi|226319364|gb|ACO47360.1| putative membrane protein; putative permease [Deinococcus deserti
           VCD115]
          Length = 368

 Score = 80.0 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/373 (14%), Positives = 134/373 (35%), Gaps = 22/373 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK FE Y+L  I    + +   ++ +  +  + + I  + +      ++ ++    +P  
Sbjct: 1   MKRFERYVLAEILPLLVGALASVIVLFVLAALQEVIAPLLAKGARPLLVARVLALNVPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P      T   L+ ++ ++EL     +G     L +PVL L + +++  F+    
Sbjct: 61  AARALPIALMFATLLGLSRLSSDSELKAALASGIPARRLYRPVLLLGLGVTVLAFLIGEG 120

Query: 121 IEPKCRSTIKQLSAKAQLALT-------FSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
           + P+ +   +++  +                  ++L  R      I + +      L+ +
Sbjct: 121 LLPRTKIEERKVKQEIVFDNPRVIGLGAQEPGGQSLVLRDALGRAISVGEVRAGGELRDL 180

Query: 174 FIVDSRDTQTHKI-YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE- 231
            IV  +     +    A+ G +      + L  G+        + ++I+ F+  TL  + 
Sbjct: 181 RIVTMQGGSVPREVITAREGRLKSGSNVLELQGGQRVTYQ-DGRPVTILSFERGTLPVQD 239

Query: 232 ---SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                ++    LKAN   L  LL    +      +    + +  H++  + L  +     
Sbjct: 240 VQADLDTGGKALKANYLPLRELLARTNSYRQQHIQAPAEFTA-LHQKFAEPLAALALAFF 298

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL----FLF 344
           ++  A       Q  +   +  +L ++F  +  +S     + +N     +L       + 
Sbjct: 299 AVSLAV---FTFQSGRDLGLVWALLLAFAYYATWSVF-RIMGENGAIPGVLAAYAPDLIA 354

Query: 345 CISSIFLLMIKKK 357
            ++   LL +  +
Sbjct: 355 VVAGAVLLKLAGR 367


>gi|307129163|ref|YP_003881179.1| hypothetical protein Dda3937_01299 [Dickeya dadantii 3937]
 gi|306526692|gb|ADM96622.1| conserved inner membrane protein [Dickeya dadantii 3937]
          Length = 372

 Score = 80.0 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 130/354 (36%), Gaps = 19/354 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETFKSQVAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGVPAMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G S+  L+K  L L++L + F   +   + 
Sbjct: 62  LILPLSLFLGLLMTFGRLYAESEITVMHACGLSKGVLLKAALLLSLLTASFAAANVLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DSRD 180
           P       ++ A+A+     + L E  F +  D   +        +  + +F+     R+
Sbjct: 122 PWSSRHQDEVLAEARANPGMASLAEGQFQQTQDGNSVLFVGKANGSDFERVFLAQLHPRE 181

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G++       Q + L+ G  +  + + +D  I  F  Y         + 
Sbjct: 182 NTRPSVVVADRGTVTARGDGSQVVTLSKGTRYEGTAMLRDFRITDFIDYQAIIGYQPVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L   +              R+EFH RLT  L  ++  ++         
Sbjct: 242 DPNNVDQMDMQTLWRSSDIAA----------RAEFHWRLTLILSVLVMAIM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +  ++ ++  +  ++ +    F   S +     +     P+++++L  +    L
Sbjct: 289 VNPRQGRVLSMLPAMLLYLVFFLLQSSLRSNAGK-GKLDPLVWMWLTNLGYFAL 341


>gi|187931969|ref|YP_001891954.1| hypothetical protein FTM_1332 [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712878|gb|ACD31175.1| conserved hypothetical protein [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 360

 Score = 80.0 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 113/356 (31%), Gaps = 8/356 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 2   ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYSQGLGIDSIVKFVILTIPENVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  L   + L+I   I+   + 
Sbjct: 62  LVAPIAIFLAIVICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTIITLITVMYLN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  + T+    A        S + +    +  D   I I   + N         ++    
Sbjct: 122 PLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIYIGNKSGNILSDVFLYQNTPQDG 181

Query: 183 THKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +K+  A +  I  D+ A      +  ++ K+  + + S    K         +      
Sbjct: 182 EYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYTIFDNSDRDYNH 241

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D+    L                 Y++EF  R+   +  ++     +  A  R   R
Sbjct: 242 DRVDR----LYMHTLIENFNDKNNGTAYKAEFLGRINNAISVIVSS--LLALALCRLRPR 295

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           Q K    +   + ++  +            ++       +L     +   +  I+K
Sbjct: 296 QNKYAKLLPSVVVLAIYLCTNMFINTLMANRSVPVWIGFWLPHIFFTIFAVRTIRK 351


>gi|312113657|ref|YP_004011253.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218786|gb|ADP70154.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 363

 Score = 80.0 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 110/354 (31%), Gaps = 7/354 (1%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ +    + L      + + + +  ++ +   +    S   L  I+   IP    +  
Sbjct: 9   RYMAKRFAITILGVFFVTLLLIFFVDFVEVLRSGARKDVSAGTLALITLLRIPIFAELTL 68

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           PF   + T     S++R +EL I+   G S    ++P L +AI   +F     N +    
Sbjct: 69  PFAILIGTIAAFLSLSRTSELTIMRAAGLSVWQFVQPALIVAIFFGVFAVTVYNPVASAM 128

Query: 126 RSTIKQLSAKA----QLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           ++  +++ A+     +   T       L     D   I  +K + +  L    +   +  
Sbjct: 129 KAKSEKIQAEIFQSEKSFATSRGTGSWLRQESVDGPTILHAKTSADRGLTLAGVTLLQFD 188

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
             ++ Y     +    RQ     +G + + S  +       F S       A     +  
Sbjct: 189 PANRFYEQIQANKAELRQGYWRLEGVIVQSSGDAVRRYDEYFVSTY--LGPAQIMNSLGS 246

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               +   L                 Y  +    L + +      LI+   + K     +
Sbjct: 247 LETLSFWDL-PGFIAFAGKAGLPTRQYELQHQLFLARPILMAAMVLIAATCSLKAFRFGK 305

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            + +    ++    F +F   S  +      P  +      L  +     +++ 
Sbjct: 306 IQTMVLTGLTGGFGFFIFSELSRKVGASGLVPVTVAAWGPALVALLLSATVLLY 359


>gi|254514079|ref|ZP_05126140.1| permease YjgP/YjgQ family protein [gamma proteobacterium NOR5-3]
 gi|219676322|gb|EED32687.1| permease YjgP/YjgQ family protein [gamma proteobacterium NOR5-3]
          Length = 362

 Score = 79.7 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 100/319 (31%), Gaps = 23/319 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   +    L     ++ I    + ++ +   +S   +  ILL +  Y +P  L 
Sbjct: 2   RLRSYLGSDVLGHTLAVSSVLLAIILTGRFVKYLAEAASGKLAAEILLPVMFYRLPGFLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E++I+   G     L +  L  A L+ + +      I 
Sbjct: 62  LLLPLGLFIGILMSYGRLYVESEMVILSACGVGPAKLARFTLAPAFLIMLIVAGLSLFIT 121

Query: 123 PK--CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P+   RS       +A   L             D  +            L+ +F+   + 
Sbjct: 122 PQGAARSEALLNDPQALQGLQLLAAGRFQPRGDDGTVTYAADIDPEAGDLRQVFLYAPKS 181

Query: 181 TQTHKIY----YAQSGSIDLDR----QAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
               +       A+ GS+ +D     + + L+ G     +P   D  ++ F  +      
Sbjct: 182 ADDERAVAGVTVARRGSVVVDEATGARYLELSHGYRFSGTPGRADYRVVSFGQFGQLLPE 241

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
             S       + +    LL                 R+  H RL+  L   I  L+++  
Sbjct: 242 EPSMARSEPVDAKPTRQLLE----------SRDPEDRAALHWRLSVALMVPIVALLALSL 291

Query: 293 ADKRALVRQRKKIHPIFIS 311
                   +R +   +  +
Sbjct: 292 ---SKTNHRRGRYIKLAPA 307


>gi|165976525|ref|YP_001652118.1| permease [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165876626|gb|ABY69674.1| predicted permease [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 334

 Score = 79.7 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 106/325 (32%), Gaps = 19/325 (5%)

Query: 35  RINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGT 94
            +N   S     +++L + G  +P +   + P    +     L      +E+ ++   G 
Sbjct: 1   MLNSAVSGKVPTDLVLSLLGLGMPALAQFMLPLSLFVALLLTLGRFYAESEITVMRACGI 60

Query: 95  SRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD 154
            +  L K   FL+I  +     +   + P   +   ++ A+A+    FS L    F    
Sbjct: 61  GKSLLTKVAFFLSIFTTALAVYNVFWLTPWAINKQSEMLAEAKSNPRFSALSAGQFMTAG 120

Query: 155 DDLYIKISKYNPNNTLQGIFIVD--SRDTQTHKIYYAQSGSID---LDRQAIILNDGEVH 209
             +    +  N  N L  I++     +      +  A+SG +       Q + L +   +
Sbjct: 121 GYVLFIENINNEQNKLNDIYVFQPDQQKKNRPSVVVAESGQLQGLPNGDQILTLENSTRY 180

Query: 210 RKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR 269
             +    D  I  F SY       +  +        + + L+           +     +
Sbjct: 181 EGTANVADFRISHFDSYQAYLGYQDVDSNEKLVQRADFNKLM----------ADQSNEAK 230

Query: 270 SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
           +E   R    L   +  L+++      ++  ++ +   +  ++ +    F   S +    
Sbjct: 231 AELQWRFALILAVPLMALLAV---PMSSVNPRQGRFAKVIPAVLLYLIYFLLQSSLKSSG 287

Query: 330 EQN-PYYIPILYLFLFCISSIFLLM 353
                    ++ L       + ++M
Sbjct: 288 ASGKLDATLLMPLVSIAFFILAMVM 312


>gi|331674536|ref|ZP_08375296.1| putative permease [Escherichia coli TA280]
 gi|331068630|gb|EGI40025.1| putative permease [Escherichia coli TA280]
          Length = 356

 Score = 79.7 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 143/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSAFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPVLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|171059277|ref|YP_001791626.1| permease YjgP/YjgQ family protein [Leptothrix cholodnii SP-6]
 gi|170776722|gb|ACB34861.1| permease YjgP/YjgQ family protein [Leptothrix cholodnii SP-6]
          Length = 364

 Score = 79.7 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 125/362 (34%), Gaps = 18/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + + + RSF  + + I+ I   + +++ +   +    S   ++ + GY     LP
Sbjct: 2   LFDSTLRKELSRSFGGTLIVILTIVLTMMLIRTLGQAALGRVSPQDVVLLLGYTSLGHLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +   + LT M  ++E+ I   +G S    ++PV+     +  F+      + 
Sbjct: 62  TMLCLSLFVAVVSTLTRMYGDSEMTIWFASGVSLTRFVRPVVRFGTPIVFFVAALLLFVW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDT 181
           P     I +L  + +     S +    F    +      I K +P+        +  +  
Sbjct: 122 PWSNRNISELRGRYEQRSDLSRVAPGQFQTSSNGQRVFFIDKQSPDAGTGRNIFILDQRV 181

Query: 182 QTHKIYYAQSGSID-----LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
               +  AQ+G ID        + ++L++G         +  +I +F  Y+++      +
Sbjct: 182 DRESVTSAQTGRIDLPDADDTHRRLVLDNGARTDLDLKGETRTISRFDQYSIRISEKALT 241

Query: 237 TIVLKAN-DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            I       ++   LL                 R+E   R+   L  +   L+ +  A  
Sbjct: 242 RIDEPPPKARSSFDLLL----------SSDPKVRAELAWRVGMVLGGINLMLLGLGLAQG 291

Query: 296 RALVRQRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                    +    +S  + F  +    +++          +  ++  +F + +  L   
Sbjct: 292 GPRSGSGWTLLLALLSFVVYFNLISLSQAWVASARLSLGTALASVHGGVFVLCAALLWWR 351

Query: 355 KK 356
            +
Sbjct: 352 VR 353


>gi|328949932|ref|YP_004367267.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
           14884]
 gi|328450256|gb|AEB11157.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
           14884]
          Length = 335

 Score = 79.7 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/353 (13%), Positives = 105/353 (29%), Gaps = 21/353 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+LR +   +L+  L  + +     +     +       L  +L+I  Y +P  L +
Sbjct: 2   LGRYLLREVLPPYLLGTLLFIALITTDLLASLSGVFLRQGTPLVEVLQIVLYRMPFTLGI 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P          L    R++EL  +  +G S + L+  +L L+ +++  +  +   ++P
Sbjct: 62  ALPLGLVFAILIGLARWVRDSELKAMYASGVSPLRLLPVLLGLSAVVAGGVLFNAAWLKP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +  +  +QL  +       S +  N  +  +       ++  P+    G          +
Sbjct: 122 EAHARYEQLLYRVYYGTVPSGVLSNQAYAPEGLGVYFAARIYPDGQGGGRLENVRVVEPS 181

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
             ++ A  G         +L D   +R +P       ++ +S       A          
Sbjct: 182 GALWSAARGVWQ--DARWVLEDA--YRINPDGT----VETRSRVPLPFPAQFVPPTTSYE 233

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
              L  L      +P          R    +R       +    ++ V            
Sbjct: 234 ALPLGELRELARVDPEA--------RFPLQRRYADAFGVIALAWLAGVVGLGLREA---- 281

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   + + FG F  ++                +L       +     ++
Sbjct: 282 -AWAFVAVVLLIFGYFVLWTLAAQLARFALVGAYGAWLPNAVYFLLAAWGTRR 333


>gi|89256769|ref|YP_514131.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315160|ref|YP_763883.1| hypothetical protein FTH_1434 [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010910|ref|ZP_02275841.1| hypothetical protein Ftulh_09393 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254368060|ref|ZP_04984080.1| hypothetical protein FTHG_01381 [Francisella tularensis subsp.
           holarctica 257]
 gi|254369660|ref|ZP_04985670.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|89144600|emb|CAJ79919.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115130059|gb|ABI83246.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253870|gb|EBA52964.1| hypothetical protein FTHG_01381 [Francisella tularensis subsp.
           holarctica 257]
 gi|157122619|gb|EDO66748.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 360

 Score = 79.7 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 112/356 (31%), Gaps = 8/356 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 2   ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYSQGLGIDSIVKFVILTIPENVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  L   + L+I   I+   + 
Sbjct: 62  LVAPIAIFLAIIICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTIITLITVMYLN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  + T+    A        S + +    +  D   I I   + N         ++    
Sbjct: 122 PLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIYIGNKSGNTLSDVFLYQNTPQDG 181

Query: 183 THKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +K+  A +  I  D+ A      +  ++ K+  + + S    K         +      
Sbjct: 182 EYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYTIFDNSDRDYNH 241

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D+    L                 Y++EF  R+   +  ++     +  A  R   R
Sbjct: 242 NRVDR----LYMHTLIENFNDKNNGTAYKAEFLGRINNAISVIVSS--LLALALCRLRPR 295

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           Q K    +   + ++  +             +       +L     +   +  I+K
Sbjct: 296 QNKYAKLLPSVVVLAIYLCTNMFINTLMANSSVPVWIGFWLPHIFFTIFAVRTIRK 351


>gi|226329629|ref|ZP_03805147.1| hypothetical protein PROPEN_03539 [Proteus penneri ATCC 35198]
 gi|225202815|gb|EEG85169.1| hypothetical protein PROPEN_03539 [Proteus penneri ATCC 35198]
          Length = 343

 Score = 79.7 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 125/343 (36%), Gaps = 19/343 (5%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           + I +  ++++ +          N+++ +    IP +  ++ P    +      + +   
Sbjct: 1   MLIFFSQKLVEILGAAVEGNIPTNLVVSLLWLGIPEMAQLILPLSLFLGLLMTYSKLYVE 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
           +E+ +++  G  +  L++  L L++L S     +   + P      +Q+   A+   + +
Sbjct: 61  SEITVMNACGIGKKALVQAALLLSLLTSALAAGNVIWLIPWSSVHQEQVLEDAKANPSLA 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR--DTQTHKIYYAQSGS---IDLDR 198
            L E  F    D   +        N  Q +F+   R    Q   +  A  G    +    
Sbjct: 121 ALMEGQFKMSSDRNMVLYLGSVKGNQFQDVFLAQLRPTQDQRPSVVVADKGYTKELPNGN 180

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNP 258
           Q ++L++G  +  + + +D  I  F  Y        S+    +   + +S L +      
Sbjct: 181 QIVVLSEGTRYEGTAVLRDFRITDFNDYQAVIGHRESTINRNRVEQKTMSELWH------ 234

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
                      +EFH RLT     VI  ++         +  ++ ++  +  ++ +   V
Sbjct: 235 ----SNETESIAEFHWRLTLIFSVVIMAVM---VVPLSEVNPRQGRVLSMLPAMLLY-LV 286

Query: 319 FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTKI 361
           F+     +H   +     P++ ++      + L ++   +  +
Sbjct: 287 FFLLQSSLHSNGEKGKVDPLIAMWSVNGVYLALAILLNVWDTL 329


>gi|194426241|ref|ZP_03058796.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
 gi|194415549|gb|EDX31816.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
 gi|195183222|dbj|BAG66767.1| putative permease [Escherichia coli O111:H-]
          Length = 285

 Score = 79.7 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 103/281 (36%), Gaps = 1/281 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             + + Y     +   D +  IL+     +     + + I+   ++     S N   + +
Sbjct: 181 DLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNLEELSM 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
             N  ++  L N   N      +    YR    ++L   +F
Sbjct: 241 PGNSFSVRQL-NHYINYLQETGQPSSEYRLALWEKLGHPIF 280


>gi|328948914|ref|YP_004366251.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
           2489]
 gi|328449238|gb|AEB14954.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
           2489]
          Length = 447

 Score = 79.3 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 117/354 (33%), Gaps = 12/354 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                YI + +   FL+  +F   + +V QIL     +      +N +LK+  Y +P V+
Sbjct: 81  NILVRYIAKELLLYFLICFVFFFVVFFVNQILLLAETILKKRVPINSVLKLILYCLPNVI 140

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF   +     L  +  + E+LI   +G     ++K VL + +L+S+F FI  +  
Sbjct: 141 SQSAPFATLVGFLMCLGRLVTDNEILIFRASGQRYSLILKSVLAMGLLISVFSFIMNDYF 200

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-------IKISKYNPNNTLQGIF 174
            P       +L  +  ++     LE     R++D            +S     ++ +   
Sbjct: 201 LPIGTLKYNRLFKQIIVSNPAIELESKSIKRMNDSTLVIGNVSKNNVSDIVLFDSEKDGV 260

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                   +     +  G I        +       K+   + IS  K     +  +S  
Sbjct: 261 QRIIMAGNSDVKKSSTPGVIMQLDMNSPIVLSLDKSKTENYESISAEK-LRLNIFEDSII 319

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYR---PELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           SS+      +     L+              + L T+  E +K+ +       F L++  
Sbjct: 320 SSSNGTSPREMTSWDLIKRIKKMKQENSSTKKRLNTFILECNKKFSVPFGSFFFALLAFP 379

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
            A        +       I LS+ +        +         +  +++   F 
Sbjct: 380 LALIFGKKDGQTLGLIFGIILSVLYWSATIIGQMFGIRGGYNGFW-MMWTPNFV 432


>gi|328544012|ref|YP_004304121.1| permease YjgP/YjgQ [polymorphum gilvum SL003B-26A1]
 gi|326413756|gb|ADZ70819.1| Permease YjgP/YjgQ [Polymorphum gilvum SL003B-26A1]
          Length = 363

 Score = 79.3 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 105/355 (29%), Gaps = 13/355 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPTVL 61
           +  LY  R   ++ L   L    + ++  +L+ +         S+  +  IS   +P +L
Sbjct: 5   TLTLYFSRRFLKAILGLFLLAAVLIFLFDVLELLRRAGERGDFSVLRITLISLLRVPLLL 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V PF           +++R  EL++    G S      P + +A+++ +      N +
Sbjct: 65  EQVLPFAVLFGAIWAFVTLSRALELVVARAAGISVWQFGAPAVLVALIIGLVSVTLYNPM 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----LYIKISKYNPNNTLQGIFIV 176
               +    +++A          L+      +  D       +   +   +        +
Sbjct: 125 AVWMQERSNEVAAGIFGTEETFLLQTTNAVWIRQDGLDGESVLNAEQLLDHGERLLGVTI 184

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            + D         ++    L  Q   L D  V+      +     +  +Y          
Sbjct: 185 FTFDRAGSFQERIEAREARLRNQFWHLKDVIVYTTESDPQRYGTYEVSTY---LTPTEVR 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +      +   L        +        Y  ++H  L + L  +   LI+   +   
Sbjct: 242 ESIGAPESISFWNLPR-FIELASRAGLPAYRYTLQYHSLLARPLLLLAMVLIAAAVSL-- 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            + R       I   +   F ++   S +           P++  +      + +
Sbjct: 299 RVSRFGGLGGMILGGIIAGFVLY-VLSELGRDFGGAGIVPPLVAAWAPGAFGVLM 352


>gi|320451334|ref|YP_004203430.1| hypothetical protein TSC_c22790 [Thermus scotoductus SA-01]
 gi|320151503|gb|ADW22881.1| hypothetical membrane spanning protein [Thermus scotoductus SA-01]
          Length = 336

 Score = 79.3 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 110/353 (31%), Gaps = 20/353 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+L+ +   +L+  L  V +     +     ++ S    +  + K+  Y +P  L +
Sbjct: 2   LGRYVLKEVLVPYLVGVLLFVALLTFDLLSSLSGVLLSRGAGVEAIAKLILYRLPWTLSL 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P          L  + R +EL      G     L+KP+  LA+L+S F  ++   + P
Sbjct: 62  ALPLGLVFAILVGLARLIRQSELKAAYAAGVPPWALLKPLALLALLVSFFNLVNLAELRP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           K      Q  A+                   + L +  ++       Q          + 
Sbjct: 122 KALEAYDQHLARLLYGEGGLSGVLRKQLYAAEGLGVYYAEEVRPEVGQNRLYGIRVVDER 181

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            +IY  Q G  D +        G V            + F +     ES  S        
Sbjct: 182 GRIYSGQEGVWDKEGWHFR---GYVLEGGKPKPFAGTLPFPTQFRPKESLGSRDPYDSTT 238

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
            + L             R ++  + R   ++RL   L     GL++              
Sbjct: 239 LRELWE-----------RSQVEPSARFALYRRLADALGGFFLGLVAAALGLSFRE----- 282

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                F+S+ +    ++    +  ++ +      + +L     +++ L +  +
Sbjct: 283 -AAWAFLSIVLLIFGYYVLWTLSAQLARYDVNPLLAFLPNAFFAALGLYLTWR 334


>gi|301325676|ref|ZP_07219137.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|300847531|gb|EFK75291.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|323966511|gb|EGB61944.1| permease YjgP/YjgQ family protein [Escherichia coli M863]
 gi|327251764|gb|EGE63450.1| hypothetical protein ECSTEC7V_3616 [Escherichia coli STEC_7v]
          Length = 356

 Score = 79.3 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 143/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDVLIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSAFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|110634109|ref|YP_674317.1| permease YjgP/YjgQ [Mesorhizobium sp. BNC1]
 gi|110285093|gb|ABG63152.1| permease YjgP/YjgQ [Chelativorans sp. BNC1]
          Length = 359

 Score = 79.3 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 103/351 (29%), Gaps = 9/351 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y  R        + + +  + +++   +           + +  L ++   +P ++
Sbjct: 5   TLGRYFFRRYAVITAWNFIGVAALVYIVTFTEITGRAGDLEGFTTSWALGLAALQLPIIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF   +     L S+NR  EL+I    G S    + P+ F A +  +   +  N I
Sbjct: 65  QQAVPFIGLVAAIATLISLNRKYELVIARAAGISAWQFLTPIAFGAFVFGLLTVLVLNPI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSRD 180
             +  ++ + L A  + A T +  +E    +  D     I           +   V    
Sbjct: 125 AARAFASAQMLEATVRGADTSNNAKERWIKQRTDQGETIIGADAALAGGTELVRPVFFII 184

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                     + S  L      L D    +          +         +       + 
Sbjct: 185 GDDRIAERLDAASAFLRDGYWELVDVVRRQ---GGNAPEKIATARVPTNLKPEFVGQELT 241

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  ++  L        +        +  + H  +T     V   LI+  A       R
Sbjct: 242 DPDAVSIFAL-PGMIETAHSFGLRANAFAMQLHSLITLPPLLVAMTLIA--ATVSMRFTR 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             +    I   +   F ++   S ++       +  P +  +   + ++F 
Sbjct: 299 MGQSATVILGGVVAGFLLY-VSSVLVRAFGDAGFVPPPIAAWTPVMVAMFF 348


>gi|189485655|ref|YP_001956596.1| permease YjgP/YjgQ family protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287614|dbj|BAG14135.1| permease YjgP/YjgQ family protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 361

 Score = 79.3 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 118/361 (32%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI +   + FL +   I  +  + ++ ++ NL   +     ++L      +P  
Sbjct: 1   MKILYKYITKIFVKIFLFTTAVIALVGIISELFRQTNLYIDNKTPFYLILIHLLSDMPWW 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     L  +++N E+  I   G +   +I     +  ++    F  +  
Sbjct: 61  LIQALPISALLALLFALGDLSKNNEITAIKAAGINISRIIILFFIMGFVIGTGDFAIKEF 120

Query: 121 IEPKC--RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           I PK    +   +     +  +       +L      +  I I   N    +     V+ 
Sbjct: 121 IVPKTSLYNKAIEKEKIQKEKINIKTEFYSLIVPALSNTRITIDHLNTEENVMKNIAVEK 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              +    +   +     +  + +L +G +   +    + +  +  +  +  +  + +  
Sbjct: 181 YSDKFKIEHLILAEVGIWENDSWLLKNGIIRNFNANFWNETYFEQYNSNIHIKPEHMAMA 240

Query: 239 VLKA-NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +     +      L    N      +     R   + R       ++  +I I  A    
Sbjct: 241 IQDVNYETMNMHALKKYINQLRLFGQTTVRERIILNIRFAAVYAYIVVMMIGIPFAIGFE 300

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIK 355
               +     + ++ ++   ++WG   I   + +N    P +  +L     S+I + ++ 
Sbjct: 301 NKLGKILSSTLAMTAAL---IYWGTQAITKSLGENLILSPFIAAWLPNLIFSAIGIYLLI 357

Query: 356 K 356
           K
Sbjct: 358 K 358


>gi|300824070|ref|ZP_07104191.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|331669797|ref|ZP_08370642.1| putative permease [Escherichia coli TA271]
 gi|331679054|ref|ZP_08379726.1| putative permease [Escherichia coli H591]
 gi|300523460|gb|EFK44529.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|324119792|gb|EGC13672.1| permease YjgP/YjgQ family protein [Escherichia coli E1167]
 gi|331062710|gb|EGI34624.1| putative permease [Escherichia coli TA271]
 gi|331073119|gb|EGI44442.1| putative permease [Escherichia coli H591]
          Length = 356

 Score = 79.3 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 143/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSAFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|88703587|ref|ZP_01101303.1| Predicted permease YjgP/YjgQ family protein [Congregibacter
           litoralis KT71]
 gi|88702301|gb|EAQ99404.1| Predicted permease YjgP/YjgQ family protein [Congregibacter
           litoralis KT71]
          Length = 352

 Score = 79.3 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 58/355 (16%), Positives = 111/355 (31%), Gaps = 4/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    Y+ R +  S L+  L IV I  +   +   +   S++     + +     +P  
Sbjct: 1   MRKLNRYVARTVWLSILLVLLVIVGIDGLSAFIDESD-SRSASYGFAEIGRYVMLTMPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   +     L  +   +EL+++   G S   L   VL  A+++++F F+    
Sbjct: 60  VYEFIPFAALIGALIGLGQLASTSELVVMRAAGISNGRLAWMVLKQALVIAVFGFLLGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I PK     +   A A+ A      E+ ++ R     +   +    N            D
Sbjct: 120 IAPKAEQQAQSGRAIARYAGRQVDTEQGIWRRDGAVFFHVQAIAPDNEVFGVTAYEFEED 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +  +A SG    D +   L D +    S      +                S   +
Sbjct: 180 GWMQRALFADSGRY--DGEGWRLRDVQSSEFSRDRVRKASAPALFLPSNITPKILSLENV 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +   L  L++        + E +  +     ++L Q        LI+I          
Sbjct: 238 APSQLTLVDLVD-YAAFLRSQGEDVADFELATWRKLMQPAAVAALVLIAISFVFGPLRDG 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                    + + I F +          +   P     L   L C+     L+ K
Sbjct: 297 TLGFRIFAGVMVGILFQLSQDLLGPASLVFGFPPLYAALAPVLSCVLVGLYLLRK 351


>gi|323978945|gb|EGB74025.1| permease YjgP/YjgQ family protein [Escherichia coli TW10509]
          Length = 356

 Score = 79.3 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 144/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI     + + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSVQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDVLIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSAFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|193067274|ref|ZP_03048242.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
 gi|209920456|ref|YP_002294540.1| hypothetical protein ECSE_3265 [Escherichia coli SE11]
 gi|218555554|ref|YP_002388467.1| hypothetical protein ECIAI1_3129 [Escherichia coli IAI1]
 gi|218696689|ref|YP_002404356.1| hypothetical protein EC55989_3396 [Escherichia coli 55989]
 gi|260857120|ref|YP_003231011.1| hypothetical protein ECO26_4088 [Escherichia coli O26:H11 str.
           11368]
 gi|260869742|ref|YP_003236144.1| hypothetical protein ECO111_3809 [Escherichia coli O111:H- str.
           11128]
 gi|293449328|ref|ZP_06663749.1| hypothetical protein ECCG_02359 [Escherichia coli B088]
 gi|300815538|ref|ZP_07095762.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|192959231|gb|EDV89666.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
 gi|209913715|dbj|BAG78789.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218353421|emb|CAU99487.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli 55989]
 gi|218362322|emb|CAQ99944.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli IAI1]
 gi|257755769|dbj|BAI27271.1| conserved predicted membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|257766098|dbj|BAI37593.1| conserved predicted membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|291322418|gb|EFE61847.1| hypothetical protein ECCG_02359 [Escherichia coli B088]
 gi|300531467|gb|EFK52529.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|320201894|gb|EFW76469.1| Permease Ygh-P1, YjgP/YjgQ family [Escherichia coli EC4100B]
 gi|323173775|gb|EFZ59404.1| hypothetical protein ECLT68_2093 [Escherichia coli LT-68]
 gi|323178689|gb|EFZ64265.1| hypothetical protein ECOK1180_2421 [Escherichia coli 1180]
 gi|323183569|gb|EFZ68966.1| hypothetical protein ECOK1357_3349 [Escherichia coli 1357]
 gi|323946693|gb|EGB42714.1| YjgP/YjgQ permease [Escherichia coli H120]
 gi|324018177|gb|EGB87396.1| hypothetical protein HMPREF9542_03232 [Escherichia coli MS 117-3]
          Length = 356

 Score = 79.3 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 143/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYTQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSAFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|215488306|ref|YP_002330737.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
 gi|215266378|emb|CAS10815.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
          Length = 356

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 143/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKQFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSAFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|194333657|ref|YP_002015517.1| permease YjgP/YjgQ family protein [Prosthecochloris aestuarii DSM
           271]
 gi|194311475|gb|ACF45870.1| permease YjgP/YjgQ family protein [Prosthecochloris aestuarii DSM
           271]
          Length = 444

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 95/238 (39%), Gaps = 6/238 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+     FL + L I+F+  +      I         L ++ ++    I  +
Sbjct: 1   MKIVDRYILKAHAAPFLFAFLTIIFVFTLQFFSLFIARFVGKGLDLLVISELILLQISWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T     ++   +E+ ++ + G S   +I PVL  A +L+  +    N+
Sbjct: 61  VVLAVPMAVLVSTLMAFGNLTNRSEIAVMRSGGLSMSRVILPVLIAASVLAFLVERFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
           + P+     K L            L EN F    D   I +   +P++  L+G+ I +  
Sbjct: 121 VLPEANYQAKMLLRDITKTKPSFGLTENAFSSFIDGYSILVRDIDPDSGELRGVTIYEGT 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAII----LNDGEVHR-KSPISKDISIMKFKSYTLQTES 232
                 +  A++GSI   + +      L +GE+H       ++  +M F  +     S
Sbjct: 181 RDDYSTVITAETGSISFTQDSHYLIMELYNGEIHEMIMNTKEEYRLMSFSRHRFVFSS 238



 Score = 53.9 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/107 (10%), Positives = 29/107 (27%)

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
           +   L+ + +  +    +   Y  E+HK+       +IF L+                  
Sbjct: 327 MLEELDASIDRISADRRMYNKYMVEYHKKYALSFACIIFVLVGAPLGVLAKRGGFGVGAG 386

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                  + + +     ++  +   +P +   L   L          
Sbjct: 387 LALAFFVLYWALLILGEHLADRNLLHPGFAMWLANILMAFIGGVAYW 433


>gi|157147734|ref|YP_001455052.1| hypothetical protein CKO_03538 [Citrobacter koseri ATCC BAA-895]
 gi|157084939|gb|ABV14617.1| hypothetical protein CKO_03538 [Citrobacter koseri ATCC BAA-895]
          Length = 366

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 127/354 (35%), Gaps = 19/354 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G SR  L+K  + LA+   +   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSRAVLVKAAMVLALFTGVVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSAVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L   +              R+E H R+T      +  L+         
Sbjct: 242 DPNDTDQMDMRTLWQTD----------TNRARAELHWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +  ++ ++  +  ++ +    F   + +     +     P+++++   +  + L
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLLQTSLKSNGGK-GKLDPVIWMWAVNLIYLAL 341


>gi|313157781|gb|EFR57192.1| permease, YjgP/YjgQ family [Alistipes sp. HGB5]
          Length = 500

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 97/234 (41%), Gaps = 6/234 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+    +L+      +++   ++F+  +  + + I+ +     S  I++++  Y +  +
Sbjct: 1   MKTIHKLVLKAYLGPMVLTFFIVMFVLMMNIVWRYIDELVGKGLSAGIIIELMTYFMANM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    +     + ++  N ELL + + G S I + KP++ L  L+S+  F   N 
Sbjct: 61  IPLGLPLAMLLAAIMTMGNLGENYELLAMKSAGMSLIRITKPLIILVSLISVGSFFIGNN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +  +    +        ++ LFF   D++ I++S+  P   L    ++    
Sbjct: 121 LVPYANKKVFSILYDIRQQKQSLEFQDGLFFNGIDNMSIRVSRQEPETHLLHDVLIYDNR 180

Query: 181 --TQTHKIYYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSYTL 228
                     A SG I L          L +GE + ++  S+  +  K + +  
Sbjct: 181 AANGDMNTIVADSGYIRLSDDKKYLLVTLFNGETYEQTRSSQWFTQSKLRHHIF 234



 Score = 42.3 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 74/253 (29%), Gaps = 4/253 (1%)

Query: 105 FLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY 164
           +L + L       +         +  +     +           +     +      +K 
Sbjct: 204 YLLVTLFNGETYEQTRSSQWFTQSKLRHHIFEKQDQVIPMEGFAMGRTDANQFSNSQTKN 263

Query: 165 NPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK 224
                     +    ++ T + Y          R   +L   +  R              
Sbjct: 264 INELQHDIDSLEKMVNSATTRSYEPLLKEQIFSRDNSVLPQPDSLRIDKSRFRDMAAMDS 323

Query: 225 SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
             TLQ           +   +N   + + + +        L   + E+HK+++  +  +I
Sbjct: 324 IATLQMREKERVWNQARTLAKNSRNMFSFDESAAKEALNQLYRSKVEWHKKMSLPVSIMI 383

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFL 343
           F LI    A   A++R+     P+ +S+      +          ++  +  +  ++L  
Sbjct: 384 FVLIG---APLGAIIRKGGLGLPVVVSIIFFVIYYIISLSGEKLAKEGSWDAVYGMWLST 440

Query: 344 FCISSIFLLMIKK 356
           F ++ I + +  K
Sbjct: 441 FILTPIAIYLTYK 453


>gi|296115280|ref|ZP_06833920.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978183|gb|EFG84921.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
           23769]
          Length = 372

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 113/357 (31%), Gaps = 15/357 (4%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+ R +     ++   I+ +  V+ +L+ +  + S    L+ +L  +   +P +     P
Sbjct: 19  YLTRELLSKIFITAAVIIALMEVLALLEEVTEIMSRHLGLSGVLYYAVIRLPLLFGNAMP 78

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +     L  +  + E+ I+   G S   L +  L   + L +   + ++ + P  R
Sbjct: 79  LAVLIGALITLVQLTSSNEISIMRAAGLSTAGLFRLFLPAVLGLGVLCVVVDDQVAP--R 136

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ---- 182
           S I Q       A   + +  +++FR    L       +    L  + +    D      
Sbjct: 137 SEIAQARWWNSTAPAPNGVTRDVWFRTGMTLVNIGGVAHGGRELHDVTVYRRDDEGALQK 196

Query: 183 ----THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                   Y+    S   D    +L+   V   +        + +            S  
Sbjct: 197 VIHLPTVRYFINRWSGVPDHALTVLSPTRVEDVALQDDTRLTLDWPRALTPDVLLQMSEN 256

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              +    +  L N  P       +    + +E   R+   L   +  L++I        
Sbjct: 257 TPLSIMTMVRVLHNAFP-----SSQSPAFFMTEILGRIMLPLTFTVMLLLAIPVVYIPPR 311

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              R  +    +   + F VF G    +      P  + +    +  I  +  ++++
Sbjct: 312 AGARSWLPVWCLGAGLVFVVFQGLLRALGNAGTLPSVVAVFVGIVIFILGVVTVLLR 368


>gi|261416539|ref|YP_003250222.1| permease YjgP/YjgQ family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372995|gb|ACX75740.1| permease YjgP/YjgQ family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326800|gb|ADL26001.1| putative membrane protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 478

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 106/254 (41%), Gaps = 6/254 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+L+ +   FL S   I F+  V  +++ ++ V S     + +L+I    +  +L 
Sbjct: 2   ILVRYVLKELIGPFLASLFGITFLFVVDFLVKILDNVLSKGLPTSTVLEIFVLNLAWMLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    + +      M+ + E+  +   G S ++L++PVL +A+LLS+ + +  N + 
Sbjct: 62  LSIPMAVLVASLMTFGRMSGDQEITAVKAAGISPLSLMRPVLLVALLLSVLMVVFNNWVL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSRDT 181
           P+      +L           +++          + + +++ +P + TL GI I +    
Sbjct: 122 PEANHRSVELMNAVSRKKPHVFIDAGRLITQFPGVQLWVNRIDPVSGTLYGIQIFEMEKK 181

Query: 182 QTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKD-ISIMKFKSYTLQTESANSS 236
              +I YA S S+D         + L  GE H   P   D    ++F S  L  ++ +  
Sbjct: 182 GAPRIVYADSASMDYVDNGATLMLRLRSGETHLVDPDDSDNYFRIRFFSQDLAMQNVDDR 241

Query: 237 TIVLKANDQNLSFL 250
                 + ++   +
Sbjct: 242 LERRSRSYRSDREM 255



 Score = 50.8 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 2/99 (2%)

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
           +    Y  E HK+ +      IF LI                I        I +    G 
Sbjct: 344 KRAAQYMVEIHKKFSTAFACFIFVLIGAPLGIMARKGGIGTGILYSLAFFVIYWICLIGG 403

Query: 323 SYIIHKIEQNPYYIPILYLFLFCISSIFL--LMIKKKYT 359
             +  ++  +P     +   +     I L   M++ +++
Sbjct: 404 ENLADRLIVSPELAMWISNIIIGAVGILLTRAMVRDRFS 442


>gi|326567797|gb|EGE17901.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis 12P80B1]
          Length = 369

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/373 (11%), Positives = 108/373 (28%), Gaps = 18/373 (4%)

Query: 1   MK--SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIP 58
           MK      Y++R    +   + + +  +  V   L  ++ +S  T +L   L    Y  P
Sbjct: 1   MKSWILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNISE-TYTLTDALLFILYRSP 59

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             L    P    +     L  +  ++EL+++   G S   ++   +  A++         
Sbjct: 60  YFLVQFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGVN 119

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
             + P        + A        +           D+  +    Y  N    G      
Sbjct: 120 QFVLPTANQHAATIRADTIYDKLITIDGYWSVNHDGDNQDVVYISYADNEGGLGEVKRYQ 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-----------DISIMKFKSYT 227
                          + L +   ++N  +      +S              +  + K  T
Sbjct: 180 LKDGQLIAALKAKSGVYLPQSDDVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKILT 239

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
           L     +   +  +  D +LS L   +     ++      +   F ++L      +   L
Sbjct: 240 LPIAPTDVYLLTKEPEDLSLSSLY-AHRQLMAHQGTRSLRHELAFWQKLLSPFAVLSLVL 298

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
           ++          +       + +   + F      +  +           ++ L    +S
Sbjct: 299 VASSFVFGSLRSQGLALRVVLALLTGLLFSYLTDLTGFVALA--TGLSPLLMALVPIVLS 356

Query: 348 SI-FLLMIKKKYT 359
           ++  + ++ +K +
Sbjct: 357 AMAGMYLLNRKSS 369


>gi|110643219|ref|YP_670949.1| putative permease [Escherichia coli 536]
 gi|170683865|ref|YP_001745245.1| YjgP/YjgQ permease [Escherichia coli SMS-3-5]
 gi|194436786|ref|ZP_03068886.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
 gi|218706607|ref|YP_002414126.1| hypothetical protein ECUMN_3464 [Escherichia coli UMN026]
 gi|256024434|ref|ZP_05438299.1| hypothetical protein E4_13749 [Escherichia sp. 4_1_40B]
 gi|293406597|ref|ZP_06650523.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298382336|ref|ZP_06991933.1| conserved hypothetical protein [Escherichia coli FVEC1302]
 gi|300900317|ref|ZP_07118496.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|312968688|ref|ZP_07782897.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|331684626|ref|ZP_08385218.1| putative permease [Escherichia coli H299]
 gi|110344811|gb|ABG71048.1| putative permease [Escherichia coli 536]
 gi|170521583|gb|ACB19761.1| putative permease, YjgP/YjgQ family [Escherichia coli SMS-3-5]
 gi|194424268|gb|EDX40255.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
 gi|218433704|emb|CAR14621.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli UMN026]
 gi|291426603|gb|EFE99635.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298277476|gb|EFI18992.1| conserved hypothetical protein [Escherichia coli FVEC1302]
 gi|300356207|gb|EFJ72077.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|312286906|gb|EFR14817.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|331078241|gb|EGI49447.1| putative permease [Escherichia coli H299]
          Length = 356

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 143/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSAFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|326559486|gb|EGE09909.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis 7169]
 gi|326568201|gb|EGE18283.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis BC8]
          Length = 369

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/373 (11%), Positives = 108/373 (28%), Gaps = 18/373 (4%)

Query: 1   MK--SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIP 58
           MK      Y++R    +   + + +  +  V   L  ++ +S  T +L   L    Y  P
Sbjct: 1   MKSWILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNISE-TYTLTDALLFILYRSP 59

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             L    P    +     L  +  ++EL+++   G S   ++   +  A++         
Sbjct: 60  YFLVQFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGVN 119

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
             + P        + A        +           D+  +    Y  N    G      
Sbjct: 120 QFVLPTANQHAAAIRADTIYDKLITIDGYWSVNHDGDNQDVVYISYADNEGGLGEVKRYQ 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-----------DISIMKFKSYT 227
                          + L +   ++N  +      +S              +  + K  T
Sbjct: 180 LKDGQLIAALKAKSGVYLPQSDDVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKILT 239

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
           L     +   +  +  D +LS L   +     ++      +   F ++L      +   L
Sbjct: 240 LPIAPTDVYLLTKEPEDLSLSSLY-AHRQLMAHQGTRSLRHELAFWQKLLSPFAVLSLVL 298

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
           ++          +       + +   + F      +  +           ++ L    +S
Sbjct: 299 VASSFVFGSLRSQGLALRVVLALLTGLLFSYLTDLTGFVALA--TGLSPLLMALVPIVLS 356

Query: 348 SI-FLLMIKKKYT 359
           ++  + ++ +K +
Sbjct: 357 AMAGMYLLNRKSS 369


>gi|114328862|ref|YP_746019.1| hypothetical protein GbCGDNIH1_2198 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114317036|gb|ABI63096.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 370

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/363 (11%), Positives = 102/363 (28%), Gaps = 23/363 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   YI R    + L+  + +  +  +   ++ +   ++    S  ++  I+   +P + 
Sbjct: 6   TLSSYITRVFLAAALVVLVALTLLVGLFDFIELLRRAATKPDVSFGLVSTIAALRLPWMS 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +        + R++EL++    G S    +   +  A LL +      + +
Sbjct: 66  ITILPFAVLLGGIGAFWRLTRSSELVVARAAGISAWQFLALPVGAAALLGMLAMTVISPL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFR-------------LDDDLYIKISKYNPNN 168
                S  +QL                                          +  N   
Sbjct: 126 SSVMLSRAEQLDNTYLRTSGGPMRLAGGQLWLRQSDPGLDPHGVSIIHAMQVAAHKNSLQ 185

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
                      + +  +   A +  +   +   +L++  V R S +      +       
Sbjct: 186 ASSITVFRLDSEDRLVQRIEAATARLVSGQ--WVLDNARVLRPSHLPDPPHTV---EIPT 240

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                         +  +   L +      +        +R  F   L   L      L+
Sbjct: 241 DLTVRRIQESFASPDTLSFWSLPD-FIRLLDRSGFSSLRHRLRFQSLLALPLLCATMALV 299

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           +  A       R+      I   ++  F +F   S +  +  Q+     +L  +   ++ 
Sbjct: 300 A--AGFSMRPSRRGGVAKMIGSGVAAGFCLFVV-SKVAEEFGQSGTVPVVLAAWAPSVAG 356

Query: 349 IFL 351
           + L
Sbjct: 357 LML 359


>gi|271498968|ref|YP_003331993.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech586]
 gi|270342523|gb|ACZ75288.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech586]
          Length = 372

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 132/361 (36%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETFKSQVAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGVPQMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G S+  L+K  L LA+L +     +   + 
Sbjct: 62  LILPLSLFLGLLMTFGRLYAESEITVMHACGLSKNVLLKAALVLALLTASLATANVLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DSRD 180
           P       ++ A+A+     + L E  F +  D   +           + +F+     R+
Sbjct: 122 PWSSRHQDEVLAEARANPGMASLAEGQFQQTQDGNSVLFVGKVNGGDFERVFLAQLHPRE 181

Query: 181 TQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G++       Q + L+ G  +  + + +D  I  F +Y         + 
Sbjct: 182 NTRPSVVVADKGTVAARGDGSQVVTLSKGTRYEGTAMLRDFRITDFINYQAIVGYQQVAV 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   +   L   +              R+EFH RLT     +   +++++      
Sbjct: 242 DPTNVEQMSFKTLWRSSDIAA----------RAEFHWRLTLIFSVL---MMAVMVVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   S +     +     P+++++L  +  + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLVFFLLQSSLRSNAGK-GKLDPMVWMWLTNLVYLSLAVLLNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|328950000|ref|YP_004367335.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
           14884]
 gi|328450324|gb|AEB11225.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
           14884]
          Length = 378

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/382 (13%), Positives = 109/382 (28%), Gaps = 39/382 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YILR     F    L  V +  +  +L R   +         L++   Y +P V
Sbjct: 1   MTRLDRYILREAFPPFAFGLLLYVGLILLSNLLGRAQWLV--GVEFWGLVRWLWYQVPFV 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    + T      ++R  ELL+I   G   +   + +   A +L          
Sbjct: 59  LNQTLPVAVLLATLLAYGRLSRENELLVIQAGGLPLLRTARWLFVAAFVLVGVSLYMSET 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+       L      +                   +  ++Y+          ++   
Sbjct: 119 LIPRANERAAVLWWDELTSKGNGLARLAGQDVPVGPYRLFFARYDYRTKEMVGVRLELWQ 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF---KSYTLQTESANSST 237
            +T  + +A  G ++ +R    L      + +     + +  F   +             
Sbjct: 179 GETLAVIFADRGRLEENR----LRLVNFRQYTLDLTRLPLPDFASLEEAEQHLRRLVRMQ 234

Query: 238 IVLKANDQNLSFLLNPNPNNPNYR-------------------------PELLETYRSEF 272
            V +   + L+ LL    +    +                         P      R +F
Sbjct: 235 NVARDPSRTLTVLLPKTRSQLLAQHGGGGFEDANPISYWYERIQKTVNSPREHLEARVQF 294

Query: 273 HKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
           H  L      ++  ++++  A      R+       F    I    ++    +   +  N
Sbjct: 295 HSMLAVPFANLVVLVLALPIAV-----RKAGSTGLAFGYSLIVTIGYYLVFTLGKLLALN 349

Query: 333 PYYIPILYLFLFCISSIFLLMI 354
               P L  +   + ++ L  +
Sbjct: 350 GVVPPELGAWGANLLALGLAWV 371


>gi|319898730|ref|YP_004158823.1| hypothetical protein BARCL_0559 [Bartonella clarridgeiae 73]
 gi|319402694|emb|CBI76240.1| conserved membrane protein of unknown function [Bartonella
           clarridgeiae 73]
          Length = 363

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 109/355 (30%), Gaps = 13/355 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV-SSSTESLNILLKISGYLIPTVL 61
           +   Y      +      L +  +  +I   +  + +      ++     IS   IP ++
Sbjct: 5   TLGRYFFVLYLKKICYFLLGVFILTLLIDFTENSSRLELLPHYTVKGAFLISLLRIPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF        +L S+N+  EL++  + G S    + P  F A LL +F  +  N +
Sbjct: 65  QQLFPFIALFSAMTMLISLNQKLELVVARSIGISAWQFLMPACFGAFLLGLFSILFVNPL 124

Query: 122 EPKCRSTIKQLSAKAQLAL-----TFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
                S  +++ A  +        + + +             I               I 
Sbjct: 125 AAWSSSQAEKMIAAWRSNNIEISTSNTRIPWLTQQTNLGRTTIGAKSITHQGLSLIDAIF 184

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              +       +  +    L   A +L +G +++     +  + ++ K++    +    +
Sbjct: 185 VQYNENATVKNWINTKKATLTNGAWLLTNGTIYKIGQTPEKFTELRLKTH---LKPEFLT 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +          L                 +       +   +  V   LI+   + K 
Sbjct: 242 EHLADPVTIPFYKLPEK-IAVARSFGYSANKFDMHLQSLIASPILLVAMTLIAATVSLK- 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               +  +   + +   I+  + +  S ++       Y  PI+  ++  + ++  
Sbjct: 300 --FTRFGQSRTLILGGVIAGFILYVISVLVRSFGNAGYIPPIIAAWVPVVVALSF 352


>gi|126031979|gb|ABN71555.1| putative permease [uncultured bacterium]
          Length = 365

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/348 (12%), Positives = 109/348 (31%), Gaps = 2/348 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
           ++   YI +      +   L +V +  ++ +L     + S    S   L       +P +
Sbjct: 9   RTLTRYIAKLFVVRVVGVLLMLVLVLQMLDLLSESGKILSQPGNSEAQLWTYVSLRLPQL 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P+   + T   L ++N+N+E++ +   G S   ++ P+L  A+ +S        +
Sbjct: 69  VARFLPYSALLATIITLATLNQNSEVVAMKAAGLSAHQVLAPLLLTALGVSATSLAFNEL 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +  +  + +K   A     +          +  D +  +  +  +   +   +  V    
Sbjct: 129 VVTRSSAALKAWQAVDYGVVPRGSAGRTNVYTRDGNDILTAASVSGEGSAMRLVGVTFYR 188

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
              +     +  S   +         +       S     +              S   +
Sbjct: 189 RDVNGAIREKIVSPRANFAQPGWRLEQPVAFDVASVQQKPIAPLVVARAVTPVQVSISTI 248

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            A+ QN+  L   +                ++  +L+  L   +  L+  +AA   A   
Sbjct: 249 DADGQNIVQLGR-SIAALKANGRRTSELEGKWWHKLSGPLSAALMPLLGAIAAFGLARSG 307

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           Q      + ++L  ++ V    +  +      P  I     FL  +  
Sbjct: 308 QLLIRAVLGMALGFTYFVVDNAALAMGNFGGYPPLIAAWAPFLLFLLI 355


>gi|325282729|ref|YP_004255270.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
 gi|324314538|gb|ADY25653.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
          Length = 347

 Score = 78.5 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 97/356 (27%), Gaps = 9/356 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YIL  + + ++M  L  V +     +            +    L    Y +PT+
Sbjct: 1   MSRLTRYILLDVLKWYVMGFLLFVVLQMTDVLSLTAGAFLDYNATPQQALSTLLYNLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L                  M  ++E+  +   G   ++L+ P+    +L+    F +   
Sbjct: 61  LNRSLVLAVPFAVLLSFGRMQGDSEIKAMYAAGVRPLSLVWPLALPFLLVGALTFWNSGW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +                   E   +   + L+    +       Q   +     
Sbjct: 121 VAPWANARWYDAWYDIYGMTPEPPTREMYAYSEGETLFY-AGRVASGEEPQQALLSGVMV 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  ++  A SG+ +   Q   L  G    +   +   S        L     ++     
Sbjct: 180 QRGGEVITADSGTWNTATQTWTLT-GAWVTRPGETPQPSA-----EPLTFVQKDTLAPPR 233

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              DQ     L     +P  +     T   +   R       VIF            +  
Sbjct: 234 PEADQLSRAELRAELADPTLQGAERRTLEHQLAGRTADSFTAVIFA--LAAGLLGLLMPG 291

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +      + + + + +  +     +       P  +  L   +F + +  L    +
Sbjct: 292 RAWAFAAVLLVVVVYYVPWTLGPQLAAGGALTPALVAWLPNLIFIVLAAALAWRLR 347


>gi|24114288|ref|NP_708798.1| hypothetical protein SF3027 [Shigella flexneri 2a str. 301]
 gi|30064335|ref|NP_838506.1| hypothetical protein S3228 [Shigella flexneri 2a str. 2457T]
 gi|24053444|gb|AAN44505.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30042592|gb|AAP18316.1| hypothetical protein S3228 [Shigella flexneri 2a str. 2457T]
 gi|281602371|gb|ADA75355.1| putative permease [Shigella flexneri 2002017]
 gi|313648098|gb|EFS12544.1| hypothetical protein SF2457T_3698 [Shigella flexneri 2a str. 2457T]
 gi|332752656|gb|EGJ83041.1| hypothetical protein SFK671_3614 [Shigella flexneri K-671]
 gi|332753042|gb|EGJ83426.1| hypothetical protein SF434370_3221 [Shigella flexneri 4343-70]
 gi|332765462|gb|EGJ95680.1| hypothetical protein SF293071_3544 [Shigella flexneri 2930-71]
 gi|332999939|gb|EGK19522.1| hypothetical protein SFK218_4003 [Shigella flexneri K-218]
 gi|333014895|gb|EGK34240.1| hypothetical protein SFK304_3820 [Shigella flexneri K-304]
          Length = 356

 Score = 78.5 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 142/365 (38%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRAGSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSAFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLILVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|319404055|emb|CBI77643.1| conserved membrane hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 363

 Score = 78.5 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 112/357 (31%), Gaps = 13/357 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      ++     L +  +  +I   +  + ++     +      IS   IP ++
Sbjct: 5   TLGRYFFMLYLKTVCFFLLGVFILVLLIDFTENSSKLALLPHYTAKGAFLISLLRIPLIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF        +L S+N+  EL++  + G S    + P  F A L  +F  +  N +
Sbjct: 65  QQLFPFIALFSAITMLISLNKKLELVVARSIGISAWQFLAPACFGAFLFGLFSILFINPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----LYIKISKYNPNNTLQGIFIV 176
                S  K++ A+ +         +     L        + +        +        
Sbjct: 125 AAWSSSQAKKMIAEWRSNSAQISTTDTRIPWLTQHTNLGRITVGAKSIIYQDLSLIDATF 184

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              +       +  +    L   A +L +G +++     +  + ++ K++          
Sbjct: 185 VQYNENATVKNWINTKKATLTDGAWLLTNGTIYKIGQTPEKFTELRIKTHLKPEFLTEYL 244

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  +      L                    +       +   +  V   LI+   + K 
Sbjct: 245 TDPITIPFYTLP----KKIAVARSLGYSANKFDMHLQSLIALPMLLVAMTLIAATVSLK- 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             + +  +   + +   I+  + +  S ++       Y  PI+  ++  I ++F  +
Sbjct: 300 --IPRFGQSRTLILGGVIAGFILYVISMLVQSFGNAGYIPPIIAAWVPVIVALFFAI 354


>gi|237729198|ref|ZP_04559679.1| YjgP [Citrobacter sp. 30_2]
 gi|226908927|gb|EEH94845.1| YjgP [Citrobacter sp. 30_2]
          Length = 366

 Score = 78.5 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 130/361 (36%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  SI   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTSIIAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSNFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQMRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  N+  L   + +            R+E   R+T      +  L+         
Sbjct: 242 DPNDTDQMNMRTLWTTDTD----------RARAELTWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + +     +     P+ +++   ++ + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLVQTSLKSNGGK-GKLDPVFWMWTVNLAYLALAIVLNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|307718797|ref|YP_003874329.1| permease YjgP/YjgQ family protein [Spirochaeta thermophila DSM
           6192]
 gi|306532522|gb|ADN02056.1| permease YjgP/YjgQ family protein [Spirochaeta thermophila DSM
           6192]
          Length = 361

 Score = 78.5 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/361 (12%), Positives = 109/361 (30%), Gaps = 5/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    + L      FL + L  V I  +I +   +     +  +   +L +    +P  
Sbjct: 1   MRVITRFALSWFLPLFLAALLSFVTILELIDLFTNLVAYIDADLTTFQILHLQLLYLPKC 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P          L S++ + EL+ +   G S    + P +   +L S   F  E +
Sbjct: 61  VTYSLPIATLFAVAFSLGSLHASNELIALFGAGISLYRFVLPFVVCGLLFSGAYFFIEEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +     +  ++L A      + + +        ++ L +   +Y+  +      +V  +D
Sbjct: 121 LAIPSLTQKQELMAILMGRTSPTQVVNVTLVGEENRLVVHTRRYDDRSHTITRVLVYEKD 180

Query: 181 TQTH--KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +        A+ G+ D D++  +L     +       ++    F+              
Sbjct: 181 EEGEFASRIEAERGTWDPDQREWVLQRVRRY-IRDEEGNLKEESFEKLRTDLGEIQPEDF 239

Query: 239 VLKANDQNLSFLLNP--NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +   +  +   L                     ++++KR++      I  L++   A + 
Sbjct: 240 LQTRHSIDKMTLAEAGRWIQTLKRAGLPYREALTDYYKRISFAFTSFIVALLATSVAGRF 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +          +      +         P     L + +F   SI       
Sbjct: 300 KANALLLSLLLSLSIGVSYYVFQMVTTLFAKLGYLPPVVGAWLPVLVFFSGSILFFKYIA 359

Query: 357 K 357
           +
Sbjct: 360 R 360


>gi|26249548|ref|NP_755588.1| hypothetical protein c3717 [Escherichia coli CFT073]
 gi|170018761|ref|YP_001723715.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|254162934|ref|YP_003046042.1| hypothetical protein ECB_02856 [Escherichia coli B str. REL606]
 gi|300916913|ref|ZP_07133616.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300923637|ref|ZP_07139665.1| hypothetical protein HMPREF9548_01830 [Escherichia coli MS 182-1]
 gi|300950816|ref|ZP_07164702.1| conserved hypothetical protein [Escherichia coli MS 116-1]
 gi|300958361|ref|ZP_07170502.1| hypothetical protein HMPREF9547_04075 [Escherichia coli MS 175-1]
 gi|301643654|ref|ZP_07243695.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|307139670|ref|ZP_07499026.1| hypothetical protein EcolH7_16283 [Escherichia coli H736]
 gi|312972759|ref|ZP_07786932.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|331643681|ref|ZP_08344812.1| putative permease [Escherichia coli H736]
 gi|26109956|gb|AAN82161.1|AE016766_249 Hypothetical protein c3717 [Escherichia coli CFT073]
 gi|169753689|gb|ACA76388.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|242378536|emb|CAQ33322.1| ybl136 [Escherichia coli BL21(DE3)]
 gi|253974835|gb|ACT40506.1| conserved hypothetical protein [Escherichia coli B str. REL606]
 gi|253978990|gb|ACT44660.1| conserved hypothetical protein [Escherichia coli BL21(DE3)]
 gi|284923007|emb|CBG36099.1| putative permease [Escherichia coli 042]
 gi|300314945|gb|EFJ64729.1| hypothetical protein HMPREF9547_04075 [Escherichia coli MS 175-1]
 gi|300415883|gb|EFJ99193.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300420078|gb|EFK03389.1| hypothetical protein HMPREF9548_01830 [Escherichia coli MS 182-1]
 gi|300449911|gb|EFK13531.1| conserved hypothetical protein [Escherichia coli MS 116-1]
 gi|301078038|gb|EFK92844.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|309703416|emb|CBJ02755.1| putative permease [Escherichia coli ETEC H10407]
 gi|310332701|gb|EFP99914.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|323936015|gb|EGB32310.1| permease YjgP/YjgQ family protein [Escherichia coli E1520]
 gi|323941918|gb|EGB38097.1| permease YjgP/YjgQ family protein [Escherichia coli E482]
 gi|331037152|gb|EGI09376.1| putative permease [Escherichia coli H736]
 gi|332344939|gb|AEE58273.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 356

 Score = 78.5 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 143/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLIDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSVFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|157156628|ref|YP_001464444.1| YjgP/YjgQ permease [Escherichia coli E24377A]
 gi|256019096|ref|ZP_05432961.1| hypothetical protein ShiD9_09279 [Shigella sp. D9]
 gi|332280199|ref|ZP_08392612.1| YjgP/YjgQ permease [Shigella sp. D9]
 gi|157078658|gb|ABV18366.1| putative permease, YjgP/YjgQ family [Escherichia coli E24377A]
 gi|332102551|gb|EGJ05897.1| YjgP/YjgQ permease [Shigella sp. D9]
          Length = 356

 Score = 78.5 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 144/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYTQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L  +  + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLKPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSAFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 IKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|222034703|emb|CAP77445.1| hypothetical protein LF82_488 [Escherichia coli LF82]
 gi|312947541|gb|ADR28368.1| hypothetical protein NRG857_14790 [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 356

 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 142/365 (38%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSAFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|332754457|gb|EGJ84823.1| hypothetical protein SF274771_3587 [Shigella flexneri 2747-71]
          Length = 356

 Score = 78.5 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 142/365 (38%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRAGSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSAFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFIAIFYGCDVCRTLVANGAIPLIPGLWLVPGLMLMGLLILVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|330994315|ref|ZP_08318243.1| Lipopolysaccharide export system permease protein lptG
           [Gluconacetobacter sp. SXCC-1]
 gi|329758782|gb|EGG75298.1| Lipopolysaccharide export system permease protein lptG
           [Gluconacetobacter sp. SXCC-1]
          Length = 369

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 105/353 (29%), Gaps = 7/353 (1%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+ R +      + + +V +  ++ +L+++  +      L  +L  +   +P +     P
Sbjct: 16  YLSREMMGKVFATAVIVVSLMEILSLLEQVTEIMHRHLGLTGVLYYAVMRLPLLFCNAMP 75

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +     L  M  + E+ I+   G S   LIK  L   I L I   +  + + P+  
Sbjct: 76  IAVLIGALLALVQMTTSNEIAIMRAAGLSTPGLIKLFLPTTIALGILCGLVNDQVTPRTE 135

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
                           +          +D + I       +           R +   K+
Sbjct: 136 QA-LAQWWNVTTPGAIAEAHNYWVRSGNDLISIHFLGSGASVLGDVTVYHRDRQSLLQKV 194

Query: 187 YYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
               +              +L+     R   +           +         + + +  
Sbjct: 195 TTLDTARYVHGHWYGTPTRMLSVISPTRIDLLDVPPGQSIRLDWPDTLTPGYITQLTIS- 253

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
             Q++S +L+          +    + +E   R+   L   +  L+++           R
Sbjct: 254 FTQSISTMLDEEAGRL-PSSQSPSFFLTEILGRIMLPLTFTVMLLLAVPVVYIPPRAGIR 312

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
             +    +   + F VF G    +      P  + I    L  I  +  ++++
Sbjct: 313 SWLPVWCLGAGLLFVVFQGLLRALGNAGTLPSLMAIFVGILIFILGVITVLLR 365


>gi|302338546|ref|YP_003803752.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301635731|gb|ADK81158.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 360

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 117/355 (32%), Gaps = 3/355 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +L +LR       +S +F  F+  ++++   +     +  +L  +L  S    P  
Sbjct: 1   MKKLDLMVLRAFFHILFLSLMFFSFVVVLVELFSNLWRYLQNDAALAEILFTSLLYYPKA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P          L S   N ELL + ++G S +    P++ L+ LLS+  +  +  
Sbjct: 61  ITLALPPSILFAIAFTLGSYQANNELLALFSSGVSLLRFTVPIIVLSALLSVGSYFFQEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +     +  + L+ +     +       +    +     KI  YN  N       V  RD
Sbjct: 121 LVIPKSAQKQILTDRLSGRSSVGNNNNVVILSGEGRFLYKIDYYNAKNRSLTGVSVLIRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           +Q +     +S     D     +       +    K ++   F +Y     S + S+   
Sbjct: 181 SQGNFTKRIESEWAQCDESGEWVFHRVRLFEVLSDKRVTEQFFLTYRNPELSESPSSFRK 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEF---HKRLTQWLFPVIFGLISIVAADKRA 297
           +    N              R    E Y  E    ++R +  L P+I  L+SI  +    
Sbjct: 241 QIGSVNELQRKEAQVWIERLRKSGSERYHKELTAYYERFSFSLTPLIVALLSISLSGYFK 300

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                  +    I   + +                P         LF   S+FLL
Sbjct: 301 KNILLMSLLSSVIVSVLYYVSEMVLVLFAQLGIIRPITGAWTSALLFLCISLFLL 355


>gi|153004269|ref|YP_001378594.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152027842|gb|ABS25610.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 360

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/362 (10%), Positives = 101/362 (27%), Gaps = 13/362 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R    +F+ +   +V I   +  +      +        +L++       V+ 
Sbjct: 2   ILFGYVARRTLNAFVGALAGVVAIFLAVDFVDNSAAFTGPGW-APAVLELYVNKAAVVVR 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P    +     +++  R  E   +   G     L  PV+ + +L    L +  ++  
Sbjct: 61  QVAPAAMILGAGIAVSTFRRTREYTAMRAVGLGPWRLAVPVVAVTLLAGGALLLVHDLWG 120

Query: 123 PKCRSTIKQLSAKAQLALTFSYL----EENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
            +     +++ A                E   +    D          +       +   
Sbjct: 121 VEAAQRAEEIQALRFGRGGDRRRFEAAREPKRWFRGGDGRRVYHLRGTSPEGGFAHVTVL 180

Query: 179 RDTQTHKIYYAQSG-SIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSS 236
             ++  ++        +  +    +L   E     P     +     + Y         +
Sbjct: 181 EVSEAFRLVRRVDAERMRPEGDRWLLEHVEDRTFLPDGTVRVERAASRRYDFPEPPDAFA 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +  +        LL+            +   + E + RL      V      +  A   
Sbjct: 241 VVPGRPTQMRWQTLLSQ-IGIRRRLGLPVAELQLERYNRLAYPFAGV--PGAMLALALAL 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIFLLMI 354
              R+      +  S+ +S  +FWG   +   +  + +  P +  +        +  L +
Sbjct: 298 RRNRKGHIAAALVESVGVS-LLFWGTQGVTWAMGLSGHVAPWVAAWAPNLVFLVVGALAV 356

Query: 355 KK 356
           ++
Sbjct: 357 RR 358


>gi|291284363|ref|YP_003501181.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|301017325|ref|ZP_07182089.1| conserved hypothetical protein [Escherichia coli MS 69-1]
 gi|331654591|ref|ZP_08355591.1| putative permease [Escherichia coli M718]
 gi|331664594|ref|ZP_08365500.1| putative permease [Escherichia coli TA143]
 gi|290764236|gb|ADD58197.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|300400298|gb|EFJ83836.1| conserved hypothetical protein [Escherichia coli MS 69-1]
 gi|320656364|gb|EFX24271.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320661735|gb|EFX29143.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320666886|gb|EFX33862.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O157:H7 str. LSU-61]
 gi|331047973|gb|EGI20050.1| putative permease [Escherichia coli M718]
 gi|331058525|gb|EGI30506.1| putative permease [Escherichia coli TA143]
          Length = 356

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 143/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSVFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|218665831|ref|YP_002426599.1| YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218518044|gb|ACK78630.1| YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 373

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 133/362 (36%), Gaps = 11/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M    + ++R +  SFL++ L ++ I  + Q+ Q +  V+S    L+I+L++ G  +PT+
Sbjct: 1   MTRIRMQVVRNLTISFLLTSLVVLAILAIGQLTQLLRQVASGQLPLSIILRLLGLALPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L MV P  F      V +++ R+ E++ I +TGT    L+ PV  +A  +     I    
Sbjct: 61  LVMVLPLAFFFAVYLVFSNLYRSNEMVAIRSTGTGLSGLLPPVAVVAACVFCLELILSLS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P  +  ++  S +   A   + L+   F  L     I + +    N+ +   I  S  
Sbjct: 121 WAPGAQRELQSESVRLANAAAEAMLQPGSFTNLPGGRVIYVGQAVGKNSHRFQEIFLSVA 180

Query: 181 TQTHKIY----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                      Y +          ++L DG+ +   P      ++ F  Y +  ++ ++ 
Sbjct: 181 QGGQLDMATAAYGEVKPAQDGALTLVLVDGQRYLGQPGKAGFKVLSFARYRVLLDNQDTG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  + + + L              +    SE   RL   L   +     +      
Sbjct: 241 GAEPGGINWSSASLPQLVR---QLHGTGMRFAVSELEWRLLWPLALPLLA--LLAIPLAY 295

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIH--KIEQNPYYIPILYLFLFCISSIFLLMI 354
           +  R   +   + + +     V     Y+         P +  +L++ L  ++       
Sbjct: 296 SEPRGGGRAAGMLVGILFLLAVNNIVVYVKEHMMNGSMPIFPGLLWVLLLILAVAAYAFF 355

Query: 355 KK 356
           ++
Sbjct: 356 RR 357


>gi|237745416|ref|ZP_04575896.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229376767|gb|EEO26858.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 347

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/327 (11%), Positives = 119/327 (36%), Gaps = 16/327 (4%)

Query: 32  ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           +++ +   +    + + ++ + G+     +P++      +    V+T   +++E+++   
Sbjct: 3   LIRILGQAAKGRVASDDVMALIGFTSLNYMPIILILTGFVSVLLVVTRSYQDSEMVVWFA 62

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
           +G S    ++PV+  A+ + + + +      P       +   + +     + +    F 
Sbjct: 63  SGLSLTRWLRPVMEFALPIVVLVTLLGFFATPWAYRQSAEYRERFEKREDIARISPGKFQ 122

Query: 152 RLDD-DLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ---AIILNDGE 207
                     + K + + +      ++S          +Q+G+++ + +    ++L DG 
Sbjct: 123 ESAAAQRVFFVEKMSEDLSKVKNVFINSSRNGKITTVVSQNGTLETNEKGEKFVVLEDGI 182

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
            + ++P   D  IM+F+ YT         TI   +     +  L  +  +          
Sbjct: 183 RYDETPDQSDFRIMEFEKYTAYIAPKGEVTISDISTRSMTTLELVTDTTSKKLG------ 236

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
              E   R+       +  L++I       +  +  +   + I++ +        S+I  
Sbjct: 237 ---ELVWRIGLPFMATLLMLLAIPLGF---VNPRAGRSFNLIIAVLLYMTYSNLSSFIQA 290

Query: 328 KIEQNPYYIPILYLFLFCISSIFLLMI 354
            + Q      + +  L    ++ ++++
Sbjct: 291 YVAQQKLAFGLAWWPLHLSVALVIVLL 317


>gi|153007032|ref|YP_001381357.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030605|gb|ABS28373.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 358

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 103/362 (28%), Gaps = 9/362 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y  R    +F+ S   +V I   +  +      +     +  +L++       V+ 
Sbjct: 2   ILFRYAARRTFAAFVGSLAGVVAIFLAVDFVDNSASFTGPGW-IPAVLELYANKTAVVVR 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P    +     +++  R  E   +   G     L  PV  + +L    L +  ++  
Sbjct: 61  QVAPAAMVLGAAIAVSTFRRTREYTAMRALGLGPWRLAGPVAAVTLLAGAALVVVHDVWG 120

Query: 123 PKCR---STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            +       I+       +       E   +FR  D   I     +          V + 
Sbjct: 121 VEATARAEEIRATRFSRGVRQFQQAREPKRWFRSRDGRRIYHLGASLPGGGFARVTVLAV 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTI 238
                      +  +  D  A +L + +     P     +     + Y         + +
Sbjct: 181 TPDFRLAGRIDAARMRPDGDAWMLEEVQDRTFLPDGSVRLERADSRRYEFPEPPEAFAVV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             + +      L+        +     E ++ E + R+      V      +  A     
Sbjct: 241 PGRPSQLRWRTLV-AQIAVRRHLGLATEEFQLERYDRVAYPFAGV--PGALLAVALALRR 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R+      +  S+ +S  +FWG   +   +  +    P +  +      + L +   + 
Sbjct: 298 NRKGHVSAALVESVGVS-LLFWGVQGVSFALGLSGRVAPWVAAWAPNALFLALGIAAVRR 356

Query: 359 TK 360
            +
Sbjct: 357 AR 358


>gi|319407067|emb|CBI80704.1| conserved membrane hypothetical protein [Bartonella sp. 1-1C]
          Length = 363

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 112/355 (31%), Gaps = 13/355 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      ++     L +  +  +I   +  + ++     +      IS   IP ++
Sbjct: 5   TLGRYFFMLYLKTVCFFLLGVFILVLLIDFTENSSKLAFLPHYTAKGAFLISLLRIPLIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF        +L S+N+  EL++  + G S    + P  F A L  +F  +  N +
Sbjct: 65  QQLFPFIALFSAITMLISLNKKLELVVARSIGISAWQFLAPACFGAFLFGLFSILFINPL 124

Query: 122 EPKCRSTIKQLSAKAQLAL-----TFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
                   +++ A+ +        T + +           + +        +        
Sbjct: 125 AAWSSFQAEKMIAEWRSNNAQTSITGTRIPWLTQHTNLGRITVGAKSIIYQDLSLIDATF 184

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              +       +  +    L   A +L +G +++     +  + ++ K++          
Sbjct: 185 VQYNENATVKNWINTKKATLTDGAWLLTNGTIYKIGQTPEKFTELRIKTHLKPEFLTEYL 244

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  +     NL                    +       +   +  V   LI+   + K 
Sbjct: 245 TDPITIPFYNLP----KKIAVARSLGYSANKFDMHLQSLIALPMLLVAMTLIAATVSLK- 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             + +  +   + +   I+  + +  S ++       Y  PI+  ++  I ++F 
Sbjct: 300 --IPRFGQSRTLILGGVIAGFILYVISMLVRSFGNAGYIPPIIAAWVPVIVALFF 352


>gi|167626385|ref|YP_001676885.1| hypothetical protein Fphi_0163 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241668816|ref|ZP_04756394.1| hypothetical protein FphipA2_08610 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877348|ref|ZP_05250058.1| permease [Francisella philomiragia subsp. philomiragia ATCC 25015]
 gi|167596386|gb|ABZ86384.1| conserved membrane protein of unknown function [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|254843369|gb|EET21783.1| permease [Francisella philomiragia subsp. philomiragia ATCC 25015]
          Length = 352

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 128/357 (35%), Gaps = 9/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI + +  SFL+  L    + ++   L +++  + +  S   L+ I+ Y +P +
Sbjct: 3   LNRIDRYIFKTVFSSFLIVSLIFCILFFIFTYLAQVSN-NDTGASNIELIIITIYQLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P C  +     L+ +  N+E++++ + G S   + K V+ + I+ SI   +    
Sbjct: 62  LYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVVLVGIIGSIVTMVFGGY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  +            + T +Y   +L+ +  D      +         GI    ++D
Sbjct: 122 IAPVLQK--------LADSNTVAYNTHDLWLKTPDGFMNISNIDPNEGKAYGIRKFITKD 173

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q  ++ YA+      D  A + N   V   +   K I + +     + +     S   +
Sbjct: 174 NQVQEVRYAEKAEYVNDATANVFNVSVVTFPNKDVKHIDVKENVYKAIWSNPIPISVAKV 233

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              + N                +  ++   +F + + Q L  ++  L+S+  +       
Sbjct: 234 ITINDNDYLNFTQLTRYMLSNSQAKDSISLKFWQEIFQPLALMVLILLSVPLSIGSTRSS 293

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +      +F +       I  I   P  +      +  +  +  L IK K
Sbjct: 294 TLILKLLLGAFFGFAFFIINQIFGPIALILHLPTILGAAGPTVIALILLIYLFIKSK 350


>gi|291296584|ref|YP_003507982.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
 gi|290471543|gb|ADD28962.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
          Length = 377

 Score = 77.7 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/372 (14%), Positives = 109/372 (29%), Gaps = 26/372 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YILR     FL      V    +  +L R   + ++  S   +LK     +P  
Sbjct: 1   MTRLDRYILREAWPVFLFGLALYVGFGLISNLLPRAQWMGTAELS--SILKWLALQVPYA 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +        + R  ELL++   G S +   +P L   +LLS F       
Sbjct: 59  TVQAMPIAGLLAVMLAFGRLARENELLVMQAGGISVLRTARPFLLGGLLLSGFSLALSEW 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P        +     +                 +  ++   ++P         ++   
Sbjct: 119 VVPWANRATALVYWNELIPERTPQFNLVGRELTVGEYILRYEGFDPAKDEFQRVRLERWQ 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS-KDISIMKFKSYTLQTESANSSTIV 239
            QT  +  AQ+  +    Q I+L D  V                +      +    +  +
Sbjct: 179 NQTMTVILAQTARLQ--GQRIVLRDYRVFTLDFAQLPLPEFASLEQAEAGLQQIFRAQNI 236

Query: 240 LKANDQNLSFLLNPNPN---NPNYRPELLETYRSEFHKRLTQWLFPV------------- 283
            +   +    L     +           +    SE+ ++L     P              
Sbjct: 237 GQPGAELTVRLSRSREDLEVQYAGGGFEVPVPLSEWWRKLQDPRTPPRELREAKAQWHAA 296

Query: 284 ----IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
               +  L+ +V A   A+ R       + ++L ++   +  FS     +  +    P L
Sbjct: 297 IALALANLMVLVLALPVAVRRATSPGTALGLALVLTIAYYVAFS-AGKVLALSGPLPPEL 355

Query: 340 YLFLFCISSIFL 351
             +   +  + +
Sbjct: 356 AAWGANLLGVAV 367


>gi|54113843|gb|AAV29555.1| NT02FT0414 [synthetic construct]
          Length = 360

 Score = 77.7 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 111/356 (31%), Gaps = 8/356 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y    I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 2   ILEKYYNIDIVNTFTSITLFIISIVSANLLIRLFQEAYSQGLGIDSIVKFVILTIPENVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  L   + L+I   I+   + 
Sbjct: 62  LVAPIAIFLAIVICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTIITLITVMYLN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  + T+    A        S + +    +  D   I I   + N         ++    
Sbjct: 122 PLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIYIGNKSGNTLSDVFLYQNTPQDG 181

Query: 183 THKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +K+  A +  I  D+ A      +  ++ K+  + + S    K         +      
Sbjct: 182 EYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYTIFDNSDRDYNH 241

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D+    L                 Y++EF  R+   +  ++     +  A  R   R
Sbjct: 242 DRVDR----LYMHTLIENFNDKNNGTAYKAEFLGRINNAISVIVSS--LLALALCRLRPR 295

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           Q K    +   + ++  +             +       +L     +   +  I+K
Sbjct: 296 QNKYAKLLPSVVVLAIYLCTNMFINTLMANSSVPVWIGFWLPHIFFTIFAVRTIRK 351


>gi|304413752|ref|ZP_07395196.1| inner membrane component LptF of LptABCFG lipopolysaccharide
           transporter [Candidatus Regiella insecticola LSR1]
 gi|304283843|gb|EFL92237.1| inner membrane component LptF of LptABCFG lipopolysaccharide
           transporter [Candidatus Regiella insecticola LSR1]
          Length = 367

 Score = 77.7 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 133/364 (36%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI++   +S +     ++ I    +++  ++   +     +++L   G  +P +  
Sbjct: 2   IITKYIIKKTFKSQMAILFILLLIFISQKLIAILSETVNGEIPTHLILSFLGLGLPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M+   E+ ++   G S+ +LI   L LA+  +    I+     
Sbjct: 62  LVLPLSLFLGLLITYGKMHTEREITVMHACGFSQNSLILVALILAMGTAALAAINTLWFM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   +   ++    +   T + L E  F    D   +             IF+   +   
Sbjct: 122 PWSVTYQGKILNDFRANPTLAALIEGQFQSSMDGKTVLFVGAVDGKKFDHIFLAQLQPDG 181

Query: 183 --THKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                I  A++G I       Q + L+ G  +  + + +D  I  FK+Y +     + + 
Sbjct: 182 SRRPSIVIAENGYIAERPDGSQIVTLDKGTRYEGTALLRDFRITDFKNYQVTINPQSITQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               +   ++  L +                RSEFH RLT     +I  L+++       
Sbjct: 242 NTNTSEQMSIRSLWH----------SSHPDARSEFHWRLTLITSVIIMALLAVPL---SV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ +   +  ++ +    F   S +     Q     P+L+L++   + + L ++  K
Sbjct: 289 VNPRQSRTLNMLPAILLYLIFFLLQSSLRSSTAQ-GKLDPLLWLWMVNGAYLALAIVLNK 347

Query: 358 YTKI 361
           +  +
Sbjct: 348 WDSL 351


>gi|331648771|ref|ZP_08349859.1| putative permease [Escherichia coli M605]
 gi|330909041|gb|EGH37555.1| permease Ygh-P1, YjgP/YjgQ family [Escherichia coli AA86]
 gi|331042518|gb|EGI14660.1| putative permease [Escherichia coli M605]
          Length = 356

 Score = 77.7 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 143/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSVFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|293412358|ref|ZP_06655081.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469129|gb|EFF11620.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 356

 Score = 77.7 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 142/365 (38%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   ++   L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRHLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSVFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLIGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|260845740|ref|YP_003223518.1| hypothetical protein ECO103_3664 [Escherichia coli O103:H2 str.
           12009]
 gi|257760887|dbj|BAI32384.1| conserved predicted membrane protein [Escherichia coli O103:H2 str.
           12009]
          Length = 356

 Score = 77.7 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 142/365 (38%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L ++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALYVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSVFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|87198520|ref|YP_495777.1| permease YjgP/YjgQ [Novosphingobium aromaticivorans DSM 12444]
 gi|87134201|gb|ABD24943.1| permease YjgP/YjgQ [Novosphingobium aromaticivorans DSM 12444]
          Length = 366

 Score = 77.7 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 111/355 (31%), Gaps = 1/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRIN-LVSSSTESLNILLKISGYLIPTV 60
           ++  +YI +      +   L +V +  ++ +L     ++++       LL      +P +
Sbjct: 9   RTLAIYIAKMFAVRIVAVLLMLVLVLQMLDLLSESGAVLAAPGNGQGELLTYVSLRMPQL 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P+   + T   L ++N+N+E++ +   G S   ++ P+  +A   S+  F     
Sbjct: 69  VSRFLPYSVLLATIITLMTLNQNSEVIAMKAAGLSAHQVLAPLFLVAAATSVVTFAFNER 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I  +  ST+K         +      ++  +  D    +             +  V    
Sbjct: 129 IVTRSTSTLKAWQDVDYGPIPVESATKSNVWLQDGPNILFARSVAGQGKAMHMTGVSWYR 188

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +      +             E       S   + +       ++       I  
Sbjct: 189 RDPTGMVTEIVTAPSASYANPGWRFREPVMFDVQSARKTALAASEVFAKSVEPVQVVISR 248

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D      L  +                ++  +++  L  ++  L+  VAA   A   
Sbjct: 249 VDADAESLTQLTGSLAAIRDAGFRTTELDGKWWHKISGPLSALLMPLLGAVAAFGLARSG 308

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  I ++L  ++ VF   +  +      P ++     F+  +     ++I+
Sbjct: 309 HLFVRAVIGMALGFAYFVFDNAALAMGNFGAYPPFLAAWAPFVLFLLIGETVLIR 363


>gi|218701755|ref|YP_002409384.1| hypothetical protein ECIAI39_3475 [Escherichia coli IAI39]
 gi|227887687|ref|ZP_04005492.1| inner membrane protein [Escherichia coli 83972]
 gi|301019930|ref|ZP_07184065.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|218371741|emb|CAR19592.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli IAI39]
 gi|227835083|gb|EEJ45549.1| inner membrane protein [Escherichia coli 83972]
 gi|299882028|gb|EFI90239.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|307555075|gb|ADN47850.1| putative permease [Escherichia coli ABU 83972]
          Length = 356

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 143/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G +   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGNPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSAFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|193062108|ref|ZP_03043204.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
 gi|192932328|gb|EDV84926.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
          Length = 356

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 143/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSVFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|260221417|emb|CBA29959.1| hypothetical protein Csp_A14760 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 367

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 118/330 (35%), Gaps = 17/330 (5%)

Query: 31  QILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIID 90
           + L   +  + +   + I++  +     + +P +      +   +V+T M R++E++I  
Sbjct: 33  RTLGEASRGTFNPADVLIIMGYTVL---SDMPTILSMSLFISVLSVVTRMYRDSEMVIWF 89

Query: 91  NTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLF 150
            +G   + L++P++  A  + + +     +I P   S I+ L  K       + +E   F
Sbjct: 90  GSGRGLLGLVRPLMRFAWPVLVVILALAFLILPWSFSKIEDLRDKYDKRGDIARIEPGQF 149

Query: 151 FRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSG---SIDLDRQAIILNDGE 207
               +   +   + +      G  +  +      +   +       +    + ++L +G+
Sbjct: 150 QESGNGDRVFFIEKDSKGQQTGKNVFIATHEGNKETITSARSGTVEVMNGDKFLVLQNGQ 209

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
              +S    D+++  F+ Y  +  + ++S      ++   +  L   P+           
Sbjct: 210 RLERSSGKNDMTLSTFERYGARVGADDNSARDYAPSNAKTTLELVQTPSAL--------- 260

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
           +  E   R    L       I + AA       +   +   F++  + F +       + 
Sbjct: 261 HMGELSWRAGLALAAFNLIWIGLAAAGANPRAGRSTNLIFAFLAFVVYFNLLVLGKNWVE 320

Query: 328 KIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             +     IP+L      +  + +L + K+
Sbjct: 321 NGK--AELIPMLLQLHGGVFLLSMLWLAKR 348


>gi|163868027|ref|YP_001609231.1| hypothetical protein Btr_0826 [Bartonella tribocorum CIP 105476]
 gi|161017678|emb|CAK01236.1| hypothetical transmembrane protein [Bartonella tribocorum CIP
           105476]
          Length = 363

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 101/355 (28%), Gaps = 13/355 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +        I  +A +I   +    + S    +      +S   IP ++
Sbjct: 5   TLGRYFFIRYLKITCYFWGSIFVLALLIDFTENSGRLPSLPHYTAKDAFLLSVLRIPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+N+  EL++  + G S    + P    A LL +F  +  N +
Sbjct: 65  QQLIPFIALFSAMTTLISLNKKLELVVTRSIGVSAWQFLMPACLGAFLLGLFSILLINPL 124

Query: 122 EPKCRSTIKQLSAKAQLAL-----TFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
                S  +++  + +          + +             I                 
Sbjct: 125 AAWGFSQAEKMMTEWRNNNVLTSLHNTRIHWLTQRTDLGRTTIGAKFITDQGFSLLDATF 184

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                      +  +    L   A  L +G +++     +  +++K K+     +    +
Sbjct: 185 VQYKDDATVKNWINTPKATLTHGAWFLTNGTIYKIGHPPEKFTVLKIKT---NLKPEFLT 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             ++         L                 +       +      V   LI+   +   
Sbjct: 242 ERLVNPATIPFYQL-PKKIMIARSFGYSAHNFDMYLQSLIALPALLVAMTLIAATVSL-- 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              R  +    I   +   F ++   S ++       Y  PI+  +   + ++FL
Sbjct: 299 NFTRFGQSRTLILGGVIAGFMLY-VISVLVQAFGNAGYIPPIIAAWTPVVIALFL 352


>gi|94984157|ref|YP_603521.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
 gi|94554438|gb|ABF44352.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
          Length = 367

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 57/373 (15%), Positives = 134/373 (35%), Gaps = 19/373 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK FE Y+L  I    + +   ++ +  +  +   I  + +   +  ++ ++    +P  
Sbjct: 1   MKRFERYVLAEILPPLVGALGVVIVLLLLALLEGVIAPLLAKGANPLLVARLVALNVPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P          L+ +  ++E+     +G     L +PVL LA L+++  F    +
Sbjct: 61  LAQGLPIALMFAALLGLSRLAADSEIKAALASGVPTSRLFRPVLLLAALVTLGTFAINEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALT------FSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           +  + +  ++ +  +  L             + NL  R   +  I + +  P   L+ + 
Sbjct: 121 LVTRAKVQVQSVQREIVLDNPRVIGLGTRDGQGNLVLRDALNRAISVGEALPGGELRDLR 180

Query: 175 IVDSRDTQTHKI-YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-- 231
           IV  +     +    A+ G +      + L DG+       ++ ++++ F   +L  +  
Sbjct: 181 IVTMQAGLPPREVITARRGRLKPGSNVLELEDGQRITFQ-DARPVTVLTFARGSLPVQDV 239

Query: 232 --SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
             S       LK     L  LL         + +    + +  H++  + L  +      
Sbjct: 240 QASFEGGDATLKPIYLPLRELLARMQTYRQQKVQAPADFTA-LHRKFAEPLAALALAFFV 298

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCIS 347
           +  A       +  +   +  +L +SF  +  +S     + +N    P+L  Y       
Sbjct: 299 VSLAVFAF---RSGQNLGLVWALLLSFAYYATWSVF-RVMGENGAVPPVLAAYAPDLIAV 354

Query: 348 SIFLLMIKKKYTK 360
              LL++ +   +
Sbjct: 355 LAGLLLLWRASRR 367


>gi|293416425|ref|ZP_06659064.1| permease YjgP/YjgQ family protein [Escherichia coli B185]
 gi|291431781|gb|EFF04764.1| permease YjgP/YjgQ family protein [Escherichia coli B185]
          Length = 356

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 134/347 (38%), Gaps = 18/347 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSVFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFL 343
           +  ++ +   +     +   +F+G       +       IP L+L  
Sbjct: 287 VKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVP 333


>gi|194426331|ref|ZP_03058886.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
 gi|194415639|gb|EDX31906.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
 gi|195183223|dbj|BAG66768.1| putative permease [Escherichia coli O111:H-]
          Length = 356

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 144/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I +   + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILLQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSVFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|126031980|gb|ABN71556.1| putative permease [uncultured bacterium]
          Length = 402

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/370 (14%), Positives = 139/370 (37%), Gaps = 20/370 (5%)

Query: 1   MKSF---ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           MK F   + YI R +    L   +    +  + ++L+  + V++    ++++ ++   L+
Sbjct: 1   MKLFTSVDRYIFRLVAMPMLAVFVIAASLLVLDKMLKLFDFVATEGGPVSVVFRMLANLL 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P    +  P    +        +  ++EL ++   G     L++    +A+ L+    + 
Sbjct: 61  PEYASLAIPIGLMLGILFAFRKLATSSELDVMRAVGLGYGRLLRVPFIMAVGLAGVNLVI 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIV 176
              ++P  R   +QL  + +     + ++   F  L D + ++I +       L GIF+ 
Sbjct: 121 VGYLQPLSRYYYEQLQFELRSGALGASIKVGEFTTLKDKIALRIERSEDEGRKLMGIFVR 180

Query: 177 DSRDTQTHKIYYAQSGSI-----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
            + D        A+ G       + D     L+DG++ + SP      ++ F  + L  +
Sbjct: 181 VADDQGQVLSVSAREGRFLALKDNPDTIVFRLSDGQIVQDSPG-VTPRVLTFSRHDLPID 239

Query: 232 SANSSTIVLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                    +     +  L  LL    N+     +     R+ F+ R+ + +  ++    
Sbjct: 240 LPALERFRQRGGGEREYLLPELLRLGWNDEVPLTQ-RNINRANFNYRMVEVVMMLLLP-- 296

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY--IIHKIEQNPYYIPILYLFLFCI 346
            ++A       ++      +F+S+ +         Y   I  + ++   + + +      
Sbjct: 297 -LLAVALAVPPKRSTSALGVFVSIVMVVAYHKVNEYGQSIAALGKSGVLLAL-WGPFVVF 354

Query: 347 SSIFLLMIKK 356
           +++ + M  +
Sbjct: 355 AAMIVWMYWR 364


>gi|283834896|ref|ZP_06354637.1| inner membrane protein YjgP [Citrobacter youngae ATCC 29220]
 gi|291069156|gb|EFE07265.1| inner membrane protein YjgP [Citrobacter youngae ATCC 29220]
          Length = 366

 Score = 77.3 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 128/361 (35%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  SI   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTSIIAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A A+     + L +  F +  +   +   +    +    +F+   R   
Sbjct: 122 PWSSRHQDEVLADAKANPGMAALAQGQFQQATNGSSVLFIESVDGSNFNDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGHLTQMRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L   + +            R+E   R+T      +  L+         
Sbjct: 242 DPNDTDQMDMRTLWKTDND----------RARAELTWRITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + +     +     P+ +++   +  + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLVQTSLKSNGGK-GKLDPVFWMWAVNLLYLALAIVLNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|153827727|ref|ZP_01980394.1| conserved permease [Vibrio cholerae MZO-2]
 gi|149737798|gb|EDM52703.1| conserved permease [Vibrio cholerae MZO-2]
          Length = 256

 Score = 77.0 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 90/249 (36%), Gaps = 1/249 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +       +           +  D + +I I+K                + 
Sbjct: 123 APQAQ-KMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVENEQLYGLNLWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   + +++      + + ++ +       + I      +    +         + + +K
Sbjct: 182 KLSTVIFSEQVDYVANNEWLMKDAVLTRLVNDIEISKESLPEYRWRTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFL 250
             + +L+ L
Sbjct: 242 PEELSLTGL 250


>gi|319405492|emb|CBI79111.1| conserved membrane hypothetical protein [Bartonella sp. AR 15-3]
          Length = 363

 Score = 77.0 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 111/355 (31%), Gaps = 13/355 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTVL 61
           +   Y      ++     L +  +  +I   +  + ++     +      IS    P ++
Sbjct: 5   TLGRYFFMLYLKTTCCFLLGVFILVLLIDFTENFSKLALLPYYTAKGAFLISLLRTPLII 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF        +L S+N+  EL+I  + G S    + P  F A L  +F  +  N +
Sbjct: 65  QQLFPFIALFSAITMLISLNKRLELVIARSIGISAWQFLTPACFGAFLFGLFSILFINPL 124

Query: 122 EPKCRSTIKQLSAKAQLAL-----TFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
                S  +++ A  +        + + +             I        +        
Sbjct: 125 AAWSSSQSEKIVAAWRSNNNQISISNTRIPWLTQHTNLGRTTIGAKSIIHKDLSLIDATF 184

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              +       +  +    L   A +L +G +++     K  S ++ K++    +    +
Sbjct: 185 VQYNENATVKNWINTKKAMLTDGAWLLINGTIYKIGQPPKKFSELRIKTH---LKPEFLT 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + +        L                 +       +   +  V   LI+   + K 
Sbjct: 242 EYLAEPVTIPFYEL-PKKIAVARSFGYSANKFDMHLQSLIALPMLLVAMTLIAATVSLK- 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             + +  +   + +   I+  + +  S ++       Y  PI+  ++  I ++F 
Sbjct: 300 --IPRFGQSKTLILGGIIAGFILYVISMLVRSFGNAGYIPPIIAAWVPVIVALFF 352


>gi|91212394|ref|YP_542380.1| hypothetical protein UTI89_C3402 [Escherichia coli UTI89]
 gi|117625286|ref|YP_854458.1| putative permease [Escherichia coli APEC O1]
 gi|218560055|ref|YP_002392968.1| hypothetical protein ECS88_3362 [Escherichia coli S88]
 gi|218691271|ref|YP_002399483.1| hypothetical protein ECED1_3630 [Escherichia coli ED1a]
 gi|237706273|ref|ZP_04536754.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91073968|gb|ABE08849.1| hypothetical protein UTI89_C3402 [Escherichia coli UTI89]
 gi|115514410|gb|ABJ02485.1| putative permease [Escherichia coli APEC O1]
 gi|218366824|emb|CAR04594.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli S88]
 gi|218428835|emb|CAR09636.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli ED1a]
 gi|226899313|gb|EEH85572.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294492595|gb|ADE91351.1| putative permease, YjgP/YjgQ family [Escherichia coli IHE3034]
 gi|307625416|gb|ADN69720.1| hypothetical protein UM146_01455 [Escherichia coli UM146]
 gi|315288787|gb|EFU48185.1| conserved hypothetical protein [Escherichia coli MS 110-3]
 gi|323951497|gb|EGB47372.1| permease YjgP/YjgQ family protein [Escherichia coli H252]
 gi|323957869|gb|EGB53583.1| permease YjgP/YjgQ family protein [Escherichia coli H263]
          Length = 356

 Score = 77.0 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 142/365 (38%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSVFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|300905893|ref|ZP_07123626.1| hypothetical protein HMPREF9536_03885 [Escherichia coli MS 84-1]
 gi|301304161|ref|ZP_07210277.1| hypothetical protein HMPREF9347_02761 [Escherichia coli MS 124-1]
 gi|307310385|ref|ZP_07590033.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|300402362|gb|EFJ85900.1| hypothetical protein HMPREF9536_03885 [Escherichia coli MS 84-1]
 gi|300840574|gb|EFK68334.1| hypothetical protein HMPREF9347_02761 [Escherichia coli MS 124-1]
 gi|306909280|gb|EFN39775.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|315062299|gb|ADT76626.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|315256879|gb|EFU36847.1| putative permease [Escherichia coli MS 85-1]
 gi|323377116|gb|ADX49384.1| permease YjgP/YjgQ family protein [Escherichia coli KO11]
          Length = 356

 Score = 77.0 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 142/365 (38%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L       S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLVQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSVFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|323188590|gb|EFZ73875.1| hypothetical protein ECRN5871_3009 [Escherichia coli RN587/1]
 gi|324005417|gb|EGB74636.1| hypothetical protein HMPREF9532_04927 [Escherichia coli MS 57-2]
          Length = 356

 Score = 77.0 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 142/365 (38%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSVFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|294084201|ref|YP_003550959.1| permease YjgP/YjgQ [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663774|gb|ADE38875.1| permease YjgP/YjgQ [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 368

 Score = 77.0 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/360 (11%), Positives = 110/360 (30%), Gaps = 11/360 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINL--VSSSTESLNILLKISGYLIPTV 60
           +   Y      R  L+    +  I  VIQ ++ +    V+ S      +  ++   +P +
Sbjct: 9   TLFRYFAFYYTRWILLCLFGLTVIISVIQSVELMRQKSVNKSDVEEISVSVLAMLNLPNI 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ PF   + T     + N++ E ++    G S    + PVL  A+ + +   +  N 
Sbjct: 69  IEVILPFAVLIGTMLCFHAWNKSNEFVVTRGFGQSIWVSLSPVLVSALAIGVLFVMVINP 128

Query: 121 IEPKCRSTIKQLS-----AKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           I                   +               + +  + I     +          
Sbjct: 129 IGAVTSKRYNSQMATLNDDISNNLTISESGIWLRDMQDNVKIIINGDALDMKTAQISNPT 188

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           + S        +  Q+ SI L +    + DG       +  ++      +     E+ + 
Sbjct: 189 IYSFVNGFELNWRVQAQSIQLTQMGWEVVDGIKWDSDGLQNELGTFIIPT---NLEAVDL 245

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +      +  ++  L +               +   F+K L      V   +I+     +
Sbjct: 246 TRSGQSPHSISIYALPH-FITVLERAGLPTINHEIHFNKILAFPFLLVGISMIATRITVR 304

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                ++ K+    + ++    +F    +++      P  +      +  +    +++ +
Sbjct: 305 SINRGRQMKLVIKGLGIATCIFIFSYLMHVMGTSLTVPALVAGWTPAITVLLIGSIMLAR 364


>gi|293603258|ref|ZP_06685689.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292818347|gb|EFF77397.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 372

 Score = 77.0 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/350 (12%), Positives = 98/350 (28%), Gaps = 25/350 (7%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
            ++ +     ++  ++ V     S+  LL +    IPT L  + P    +     L  + 
Sbjct: 2   ALLGLFTFFALVDDLDNVGDK-FSMMALLYMQALAIPTRLYDLLPIGLLIGAILALAGLA 60

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLAL- 140
           +  EL+I+  +G S + L++ +  + I L I   +    + P       + +   +    
Sbjct: 61  QRNELVILRVSGVSGMRLLRMLWVVTIPLMIGAALLSEYVTPWAEIKSGEANLMFRGKAG 120

Query: 141 ----TFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL 196
                  Y  +         +                     +D     +  A +G    
Sbjct: 121 GDRLKSGYWFKEPTANGGMRIINIAELKGDGQVAGITLYEFKKDQTLTVLSTAPTGLFSH 180

Query: 197 DRQAIILNDGEVHRK------------SPISKDISIMKFKSYTLQ--TESANSSTIVLKA 242
                +L D    R              P +   S++K    T+     +      VL  
Sbjct: 181 GDL--VLKDVSETRLDNDAADALANARQPKNPPASVVKVPERTIDTTLSAERLLARVLTP 238

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              ++  LL+                     ++L      ++   I+          R+ 
Sbjct: 239 ERMSIVTLLD-YVEYLRDNQLQYGRQVVALWRKLAYPFTLLVMITIAAPIGLM--QTRRG 295

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                +FI + +  G F      ++      +   +  L     +    L
Sbjct: 296 GVGAKVFIGILLGVGFFMLNQLALNVGMLGKWPSWLTALGPNIGAMALAL 345


>gi|306816677|ref|ZP_07450809.1| hypothetical protein ECNC101_08664 [Escherichia coli NC101]
 gi|305850242|gb|EFM50701.1| hypothetical protein ECNC101_08664 [Escherichia coli NC101]
          Length = 356

 Score = 76.6 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 145/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     +  +
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLD-QS 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +K   ++++ L             +     +E   R ++ L  ++     ++A     
Sbjct: 240 ANVKRKAKSVTEL----------ARSVFPADHAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|315138812|dbj|BAJ45971.1| conserved inner membrane protein [Escherichia coli DH1]
          Length = 366

 Score = 76.6 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 130/361 (36%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTAMLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E +  +T      +  L+         
Sbjct: 242 DPNDTDQMDMRTLWNTDTD----------RARAELNWCITLVFTVFMMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + +     +     P L+++   +  + L ++   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGK-GKLDPTLWMWTVNLIYLALAIVLNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|317401899|gb|EFV82506.1| permease [Achromobacter xylosoxidans C54]
          Length = 385

 Score = 76.6 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 125/361 (34%), Gaps = 6/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I     +    ++ +   + +++ +   +      +++L ++     T 
Sbjct: 20  MSLFKRSVVSEITSHAGVVFSTLLIVWLSVLLVRLLGEAAGGNIGADVVLVLAALSTITA 79

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP +      +     +T   R +E+++   +G S    +KPVL +A+ ++I +     +
Sbjct: 80  LPTILAVSVFIAVLTTVTRNYRESEMVVWFASGLSLADWLKPVLRVAVPVAIAVAGLTLV 139

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P     I +   + +     S +    F        +  ++     T +   +     
Sbjct: 140 AAPWAYRQIGEYHERFEQRSDLSKVTAGQFAESAGGNRVFFAEDPAKPTDELGNVFARET 199

Query: 181 TQTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                     S +    +    + ++L +G  +   P + +I ++ F+ Y L+ ES    
Sbjct: 200 GPEWLSVLTASSAHSETLPNGDRFLVLGEGHRYDLKPGTPEIRLVHFEKYGLRLESKGGD 259

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V +A         +     P    +   +  S+   R++  L  +   L++I      
Sbjct: 260 DPVAEARAAAER--SSKARTTPQLMADNTSSSWSQVMWRISLPLAALNLALLAIPLGAVN 317

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             + +   +    +   +   +       I   + +     +    +  + + FLLM + 
Sbjct: 318 PRLGRSGDLLIAGLVGLLYMNLINLSRAWISNGKLSFGVGTVAIHVVVAMFTAFLLMRRL 377

Query: 357 K 357
           +
Sbjct: 378 R 378


>gi|319941842|ref|ZP_08016164.1| hypothetical protein HMPREF9464_01383 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804775|gb|EFW01642.1| hypothetical protein HMPREF9464_01383 [Sutterella wadsworthensis
           3_1_45B]
          Length = 379

 Score = 76.6 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/360 (11%), Positives = 123/360 (34%), Gaps = 16/360 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  ++  +          +  I   + +++ +N+ +  +     ++++  Y     LP
Sbjct: 2   IFKRSLIAELANLAGAVFTVLFTIVLAVAMVRFLNMAAGGSIEHGTVVQLVLYNALVNLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTG-TSRITLIKPVLFLAILLSIFLFISENII 121
            +      + T   L    ++ E+++  ++G  S ++ I+P +  A+ + + + +   +I
Sbjct: 62  PLLAASLFIATLMTLMRSWQDNEMVVWFSSGGRSILSWIEPTVKFALPIVVVIALLSIVI 121

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFR-LDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            P  R+   +L          + +    F   +       +              +   D
Sbjct: 122 SPWARAETDRLRNSVSAREDVNAIAPGRFIEAMGGKRVFFVESAEEGGNQVRNVFMAEGD 181

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G+I+      + ++L +G  +     S    I++F SY ++ +      
Sbjct: 182 WGKESVVTAEKGTIEVNAEGDRYVVLGNGRRYEAQTDSGKTRIVEFGSYGVRLDIRIDRA 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LL  +P            +++E   R +     ++  L++I  +    
Sbjct: 242 FASTKTSSMPIALLIASP---------TPDHQAELLWRFSWPAAALLLALLAIPLSCTSP 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R  + ++ +  +L     +           +Q   +     +    +  + +++  ++
Sbjct: 293 --RAGRSLNLLMAALVFILYLNALSIVETKIEQQALTFWSGYTVLNGSLLILTVVLFIRR 350


>gi|281180021|dbj|BAI56351.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 356

 Score = 76.6 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 145/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     +  +
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLD-QS 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +K   ++++ L             +     +E   R ++ L  ++     ++A     
Sbjct: 240 ANVKRKAKSVTEL----------ARSVFPADHAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|188494208|ref|ZP_03001478.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
 gi|188489407|gb|EDU64510.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
          Length = 356

 Score = 76.6 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 134/347 (38%), Gaps = 18/347 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSVFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFL 343
           +  ++ +   +     +   +F+G       +       IP L+L  
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVP 333


>gi|71891828|ref|YP_277557.1| putative transmembrane protein, transport [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71795934|gb|AAZ40685.1| putative transmembrane protein, transport [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 373

 Score = 76.6 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 133/357 (37%), Gaps = 14/357 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F  YIL+ I R+ L+    +  + +  ++++ ++LV  S  S+ ++    G  +P    
Sbjct: 2   IFTKYILKEIFRNQLIILTLLFLVCFCQKLIKMLSLVIDSGISIYLIFLCLGLNMPESGK 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ PF   +        ++ + E++ + +    +   I+ + F + +++    I+ + + 
Sbjct: 62  LLIPFSVFLSVLVTFYRLHAHNEIIAMYSCAVDKYIFIRSIFFFSGIVATCTMINISWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P C S   +L  K +  +    L E  F  L     I  S     N L+ +F+  +   +
Sbjct: 122 PYCSSYQSKLLYKIKENINLVILSEKKFQPLATKYLILFSDSIQGNKLKNVFLSKTNPDK 181

Query: 183 THKI---YYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            + +     +  GS+  +      IIL  G  +      +    +    ++      NS+
Sbjct: 182 DNSMFIIITSDQGSVCRNPDGSRLIILKKGTYYEIYNKCELCQDVLITDFSQYQMLINST 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  ++++  +                  R+E H RLT  +   +  +I+ +     
Sbjct: 242 IKTFYEKNESVDHMFMH-----QLWRSNKSEMRAELHWRLTLLVSIFLMPMITTLLITVV 296

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +       +  +F+ +          S +   +  N   I  +++      SI LL+
Sbjct: 297 SYNYLINLLVTVFLYIIFFIFHILLRSCV---LLDNINPIVWMWVINSIYLSIVLLL 350


>gi|157162460|ref|YP_001459778.1| YjgP/YjgQ permease [Escherichia coli HS]
 gi|157068140|gb|ABV07395.1| putative permease, YjgP/YjgQ family [Escherichia coli HS]
          Length = 356

 Score = 76.6 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 134/347 (38%), Gaps = 18/347 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTKDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSVFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFL 343
           +  ++ +   +     +   +F+G       +       IP L+L  
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVP 333


>gi|300931864|ref|ZP_07147161.1| conserved hypothetical protein [Escherichia coli MS 187-1]
 gi|300460287|gb|EFK23780.1| conserved hypothetical protein [Escherichia coli MS 187-1]
          Length = 353

 Score = 76.6 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 144/365 (39%), Gaps = 21/365 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L  + + +  
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLPLDQSPNVK 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K    +++ L                   +E   R ++ L  ++     ++A     
Sbjct: 241 RKAK----SVTEL----------ARSAFPADHAELQWRQSRGLTALLMA---LLAISLSR 283

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 284 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 343

Query: 357 KYTKI 361
            ++ +
Sbjct: 344 DFSLL 348


>gi|149178410|ref|ZP_01857000.1| hypothetical protein PM8797T_01869 [Planctomyces maris DSM 8797]
 gi|148842727|gb|EDL57100.1| hypothetical protein PM8797T_01869 [Planctomyces maris DSM 8797]
          Length = 392

 Score = 76.6 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 57/397 (14%), Positives = 120/397 (30%), Gaps = 50/397 (12%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+L  + R F +    +  +   +   Q+    +S    + ++LKI  +++P++
Sbjct: 1   MRLLQRYVLFELLRVFTLMITVLTVLLVFVGAFQQ---ATSQGLGVILVLKILPFIVPSM 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP   P    +    V   +  + E+      G + ++L+ P   L   LS+   I  + 
Sbjct: 58  LPFTIPATLLLTVCVVYGRIAGDQEITAAKAAGINVLSLLWPSFILGGFLSLGSLILSDQ 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     I+   A     +    L                     N TL       S  
Sbjct: 118 IIPWAEKNIENTIACELETIFLEKLRSQNQIHDPTSGISITVMGVRNKTLLVPTFRYSPP 177

Query: 181 TQTHKIYYAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +      A+  +++ D   Q +IL+  + H   P         F           S T 
Sbjct: 178 NKKPVHLQAEEATLEFDLTNQQVILHISKGHIDFPGKPRF----FVEKDTFPFPLPSQTT 233

Query: 239 VLKANDQNL----SFLLNPNPN----------------------------------NPNY 260
           + K    ++    S L++ +                                       +
Sbjct: 234 MAKPRHMSVKSIKSELVDLSEKKNEFEFQRDIEVAMLLALGDFEHFQSPEVNTDLPQNQF 293

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
           + +     ++    R         F L+    +   A  R++       + L I    + 
Sbjct: 294 QEKRQNKLKTALSSRFALSCSCFFFVLVGCPFSI--AQARRQFLTSFFLVFLPILLFYYP 351

Query: 321 GFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMIKK 356
                I+  +Q        L+     +  + + M++K
Sbjct: 352 IVLLAINLAKQGKIEPTWSLWAGNAGLLIVAIHMLRK 388


>gi|296137009|ref|YP_003644251.1| permease YjgP/YjgQ family protein [Thiomonas intermedia K12]
 gi|295797131|gb|ADG31921.1| permease YjgP/YjgQ family protein [Thiomonas intermedia K12]
          Length = 377

 Score = 76.6 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 110/332 (33%), Gaps = 5/332 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +L + R + R+F  +   +  +   + +++ +   S    S   +  + G    + L 
Sbjct: 2   LLDLTLRREMSRNFGGAFTVLFTVVITLMLIRILGQASDGQASPQDVFLLIGLTALSYLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V      +      T M  ++E+ I   TG  R+ L+  VL  +  + + +        
Sbjct: 62  IVITLSLFLAVLLTFTRMWLDSEMTIWRTTGVGRLRLMVSVLRFSWPILLLIAALTLFAW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDT 181
           P        L  + +     S +    F           I K      +     +    +
Sbjct: 122 PWANQQSTALRIRFEQRSDISRVAPGQFRESASGKRVFFIDKGAQAGGVAHDIFIRDDTS 181

Query: 182 QTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
               +  A+S  +     +  ++L++G  +  +P   + +I  F S  ++ ++    + V
Sbjct: 182 GQTVLITARSAQVQRIDGQPFLVLSNGNRYAHTPGQANYTITSFDSLDMRLDATTGLSNV 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE--TYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                  +++L  PN N P           +  E   RL   L   +  L+++  A    
Sbjct: 242 ADNKTGPVNWLTQPNRNVPTEYLFNPAIPNWLGELSWRLGVPLSAALLALMALPLASGSV 301

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
              +   +    +   I F +       I + 
Sbjct: 302 RTGRAGSLISAILVYLIYFNLLNVLQGWISEG 333


>gi|300973446|ref|ZP_07172202.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|300410788|gb|EFJ94326.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|315291260|gb|EFU50620.1| conserved hypothetical protein [Escherichia coli MS 153-1]
          Length = 356

 Score = 76.6 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 133/347 (38%), Gaps = 18/347 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSVFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFL 343
           +  ++ +   +     +   +F+G       +       IP L+L  
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVP 333


>gi|241765203|ref|ZP_04763187.1| permease YjgP/YjgQ family protein [Acidovorax delafieldii 2AN]
 gi|241365132|gb|EER60004.1| permease YjgP/YjgQ family protein [Acidovorax delafieldii 2AN]
          Length = 365

 Score = 76.6 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 134/361 (37%), Gaps = 14/361 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + +V +   + +++ +   S  + S + ++ + G+ +   LP
Sbjct: 2   LFDSSIRKELARSFGATLVVLVTVVMTMMLIRTLGQASRGSVSPSDVMLVMGFTVLGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VL+ M R++E++I  + G   I+L+ P+L  A  +   + +    + 
Sbjct: 62  IILSLSLFVAVVGVLSRMYRDSEMVIWFSGGRGLISLLPPLLRFAWPVMAVIALLSLGVW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   + I++L  + +       +    F    +   +     +  +T  G  I  +    
Sbjct: 122 PWANAQIQELKTRYEQRSDIDRIAPGEFQESANGSRVFFIDKDAPDTQVGNNIFIAASNG 181

Query: 183 THKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +   +       I    +  +L+ G+    S     + I +F  Y  +   A++S   
Sbjct: 182 PKESVTSARSARLEIRQGERFALLSQGQRLESSSDHPGLKISEFVEYGTRIGGASASATE 241

Query: 240 LKA-NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-DKRA 297
             A   +    LL             +  +++E   RL   L  + F ++ +  A     
Sbjct: 242 ELAVKTRATHELLMQPA---------IPAFQAELGWRLGLALAAINFVILGLALASVNPR 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  +   +     +  G S+I         ++ +L+     ++ I L +    
Sbjct: 293 AGRSGSMLFALLAFVVYYNLMTLGQSWIGAGKLGLLSFMLLLHGGTLIMAGIILAIRHNH 352

Query: 358 Y 358
           +
Sbjct: 353 W 353


>gi|327398670|ref|YP_004339539.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
 gi|327181299|gb|AEA33480.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
          Length = 348

 Score = 76.2 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 119/351 (33%), Gaps = 13/351 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI     ++F +S  F V +  +      ++ +  +  S+  ++    Y  P +
Sbjct: 1   MKKIHKYITIFFLKTFFISLAFFVLLFVLSDFFSNLSDIVGNGVSIKYIISYYVYYTPFI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF FA+ +   L  ++   E++++ ++G S   + KPVLF +I++++ +F S+ +
Sbjct: 61  IYFSLPFIFALSSLVSLGYLSSKNEIIVMRSSGLSIFKIAKPVLFFSIIVAVLMFASKEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I          +         F      +         + ++     N            
Sbjct: 121 IVNYGLEKASFVKHYYFKNKQFKLGWTKVGNMFIKVNGLNVTNNMAYNVTA----YRVDK 176

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                     +  +    + II  DG     +  +               +S  S     
Sbjct: 177 DFNRVEAIITAKRVKFKPKEIIFIDG--CSFNMPNFSQGRCFKDFKIKTNKSFYSLFSSS 234

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K  + ++  L+    ++        + Y S    R       +I  LIS V         
Sbjct: 235 KFKEPSIKSLVFSYKHSL-----DKDYYLSLIIHRFVYPFSCIILTLISFVFVL--KTNP 287

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +R        S S+ F V+ G   +I  + +     P + + +F +  + +
Sbjct: 288 RRGGFVKNVFSSSLVFLVYIGSLELISSMGRYSMVDPNISIVIFILFWLSV 338


>gi|317494176|ref|ZP_07952592.1| inner membrane protein yjgP [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917949|gb|EFV39292.1| inner membrane protein yjgP [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 366

 Score = 76.2 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 129/354 (36%), Gaps = 19/354 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETFKSQIAILFILLLIFFCQKMVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E++++   G  +  LIK  + LA +   F  ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEIVVMHACGLGKGVLIKTAMILAFITGAFALVNAFWVS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + + E  F    D  Y+           + +F+   R   
Sbjct: 122 PWSSFHSDEVMAEAKANPGLASMVEGQFQPSKDGNYVLFVGDVKGKKFENVFLAQLRPNG 181

Query: 183 --THKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A +G +       Q ++L+ G  +  + + +D  I  F +Y           
Sbjct: 182 TQRPSVVVADTGHMEGRPDGSQQVVLDTGTRYEGTALLRDFRITDFVNYEAVIGHQAVVL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A+   +  L + N  +          +R+EFH R+T      +  L+         
Sbjct: 242 NPSNADQAPMQALWDSNEKD----------FRAEFHWRITLVFSVFVMALM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +  ++ ++  +  ++ +    F   S +     +     P +++++     + L
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSNAAK-GKIDPFIWVWVVNGFYLLL 341


>gi|331659262|ref|ZP_08360204.1| putative permease [Escherichia coli TA206]
 gi|315297643|gb|EFU56920.1| conserved hypothetical protein [Escherichia coli MS 16-3]
 gi|331053844|gb|EGI25873.1| putative permease [Escherichia coli TA206]
          Length = 356

 Score = 76.2 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 145/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     +  +
Sbjct: 181 ANRTRIFRARSVDVVDLSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLD-QS 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +K   ++++ L             +     +E   R ++ L  ++     ++A     
Sbjct: 240 ANVKRKAKSVTEL----------ARSVFPADHAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|239809483|gb|ACS26209.1| unknown [uncultured bacterium]
          Length = 291

 Score = 76.2 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 8/295 (2%)

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P    +     L ++  ++EL I+   G S   ++  V+   ++L I   +    + P
Sbjct: 1   MLPMAALIGCLIGLGTLASSSELTIMRAAGVSLGRIVVAVMKPMLVLLIAGILIGEYVAP 60

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                 +   + AQ A      +  L+ R +++     +       +         + + 
Sbjct: 61  ATEDIAQARRSLAQGAGEAQSSKRGLWHRQENEFVHVNAVQPGGMLVGVTRYRFDDERRL 120

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
               +A+  S   D    +L +           ++     + + +Q       T+V++  
Sbjct: 121 LSSSFARRASYQAD--HWLLENISTTHFRGDHTEVVRTPQERWDVQLTPQLLGTVVMEPE 178

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             +++ L     +    +      Y   F  ++ Q    V   L++I             
Sbjct: 179 ALSITGL-WRYIHYLGEQGLNNGRYWLAFWTKVLQPAVTVALVLLAISFIFGPLRSVTLG 237

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS--SIFLLMIKK 356
           +     + +   F +         ++     + P+L + L       I   ++++
Sbjct: 238 QRIFTGVVVGFVFRIIQDLLGPASQVFG---FSPLLAVVLPAGICALIGAWLLRR 289


>gi|225627183|ref|ZP_03785221.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|225618018|gb|EEH15062.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
          Length = 397

 Score = 76.2 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 102/354 (28%), Gaps = 12/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +  L   L I  +A ++   +  + +++    ++   L +S   +P ++
Sbjct: 40  TLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIM 99

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+NR  EL++  + G S    + P  F A+L  +      N +
Sbjct: 100 QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 159

Query: 122 EPKCRSTIK----QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
                S  +             ++            + +  I         T        
Sbjct: 160 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 219

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D Q +      + +  L      L D          ++   ++    + Q        
Sbjct: 220 QFDEQKNIKDRYDARTATLQDGYWELTDVMRF---ARGQEPQKLETFRISTQLRPEYVEE 276

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +        + L +               +  ++   L      +   LI+   +    
Sbjct: 277 KLASPETIPFTQLRHK-IEVARSFGYSANAFDMQYQSLLALPALLMAMTLIAATVSL--K 333

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            VR  +    I   +   F ++   S ++       +  P +  ++  + + F 
Sbjct: 334 FVRFGQSGAMILGGVIAGFVLYVV-SVLVKAFGDAGFVPPFVAAWVPVVIATFF 386


>gi|320195130|gb|EFW69759.1| Permease Ygh-P1, YjgP/YjgQ family [Escherichia coli WV_060327]
          Length = 356

 Score = 76.2 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 143/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P         +L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVMLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLEHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSVFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|94985285|ref|YP_604649.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
 gi|94555566|gb|ABF45480.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
          Length = 381

 Score = 76.2 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/382 (11%), Positives = 112/382 (29%), Gaps = 28/382 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+ R +    +   L    I         I+        + ++ +  GY +P  
Sbjct: 1   MTRLTRYVTRELLPPLVAGTLLFTAILSFGYFF--ISSQWLRGVPVGLIGQWIGYQLPDT 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P    + T      +    EL+ + + G     + +PV  +A L++         
Sbjct: 59  LVKVLPMAVVLMTVVAFGRLATERELVAVQSGGIGLGQVARPVAVVAALVTALAVWLSLW 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+     + L          S +        D+              LQ + +     
Sbjct: 119 VAPRANVETRGLYWDVLTGAGLSQVVGKTVDLGDNLTLWLGGYDAAGRKLQNVRVERWAK 178

Query: 181 TQ--THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                  + +A SG+ + +R ++          +  ++   + +      +T        
Sbjct: 179 DDPQRTTVIFADSGTFENNRLSLRGYQVYTVNYAAAARLARVPENDPAAFRTAVQEVFPN 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETY--RSEFHKRLTQWLFPVIFGL--------- 287
           V+   D + +  L+   +      +  +     +E    L   L      +         
Sbjct: 239 VVLPEDASSTLNLDTGLSRKQTIAQYADAIGADAEGWPELITKLTAPGVSVQERQDARVN 298

Query: 288 ----ISIVAA-------DKRALVRQRKKI-HPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
               +++               +R  + +   + I+L I+   +  F   +      P  
Sbjct: 299 LNRKLALPFGNLVLALAALPFALRFGRTLGVSLGIALLIAVAYYLVFFVGLTLAGAFPRL 358

Query: 336 I-PILYLFLFCISSIFLLMIKK 356
               ++L     + + L ++++
Sbjct: 359 PEVGVWLANLVFAGLGLWLLRR 380


>gi|224586302|ref|YP_002640101.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224470830|gb|ACN48660.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 359

 Score = 76.2 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 126/348 (36%), Gaps = 19/348 (5%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +R   +S L     ++ I +  ++++ +          N++L + G  +P +  ++ P  
Sbjct: 1   MRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLS 60

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     P     
Sbjct: 61  LFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAGPWSSKH 120

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKI 186
             ++ A+A+     + L +  F +  +   +   +    +    +F+   R        +
Sbjct: 121 QDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPKGNARPSV 180

Query: 187 YYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
             A SG +       Q + LN G     + + +D  I  F++Y         +      +
Sbjct: 181 VVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTD 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++  L N + +            R+E H R+T      +  L+         +  ++ 
Sbjct: 241 QMDMRTLWNTDND----------RARAELHWRITLVFTVFMMALM---VVPLSVVNPRQG 287

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           ++  +  ++ +    F   + I     +     P+++++   +  + L
Sbjct: 288 RVLSMLPAMLLYLLFFLIQTSIKSNGGK-GKLDPVIWMWAVNLIYLAL 334


>gi|332998925|gb|EGK18516.1| hypothetical protein SFVA6_3890 [Shigella flexneri VA-6]
          Length = 356

 Score = 76.2 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 142/365 (38%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSAFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +   + +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPWQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLILVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|325278208|ref|ZP_08143701.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
 gi|324096648|gb|EGB95001.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
          Length = 241

 Score = 76.2 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 80/242 (33%), Gaps = 3/242 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +A +   +  +  + S T ++           P  
Sbjct: 1   MAKLDRYIGQSVLLAILAVLGIILGLASLFAFIDEMGDL-SDTYTVMQAGYYVLLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  ++EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  LYEMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ        +  ++ R  ++     +       L         +
Sbjct: 120 VAPVTENKAQADRSLAQGGGEAQSSKRGMWHRQGEEFVHINAVQPNGLLLGVTRYRFDSE 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +     +A+      D    +L+D           ++     + + +       +T++L
Sbjct: 180 RKIQTSSFARRAQYTDD--HWLLSDVSTTFFRGDHTEVVKAPTERWDVSLTPQLLNTVIL 237

Query: 241 KA 242
             
Sbjct: 238 AP 239


>gi|293604027|ref|ZP_06686440.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292817631|gb|EFF76699.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 369

 Score = 76.2 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/362 (11%), Positives = 124/362 (34%), Gaps = 8/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I     +    ++ +   + +++ +   +      +++L ++     T 
Sbjct: 1   MSLFKRSVVSEITSHAGVVFSTLLIVWLSVLLVRLLGEAAGGNIGADVVLVLAALSTITA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP +      +     +T   R +E+++   +G S    +KPVL +A+ +++ +     +
Sbjct: 61  LPTILAVSIFIAVLTTVTRNYRESEMVVWFASGLSLADWLKPVLRVAVPVALAVAGLTLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P     I +   + +     S +    F        +  S+     T +   +     
Sbjct: 121 AAPWAYRQIGEYHERFEQRSDLSKVTAGQFAESSGGSRVFFSEDPVTPTDELGNVFARET 180

Query: 181 TQTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                     S +    +    + ++L +G  +   P + +I ++ F  Y L+ ES    
Sbjct: 181 GPEWLSVLTASSAHSETLPNGDRFLVLGEGHRYDLKPGTPEIRLVHFNKYGLRLESKAGG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + +A         +          +  ++  S+   R++  L  +   L++I      
Sbjct: 241 DPIAEARAAAER--SSKARTTMQLVEDNTDSSWSQVMWRISLPLAALNLALLAIPLGAVN 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             + +   +    +   +   +       I   +    +   ++     ++ + + ++ +
Sbjct: 299 PRLGRSGDLLIAGLVGLLYMNLINLSRAWISNGK--LSFGVGVWAIHGAVALLTVFLLMR 356

Query: 357 KY 358
           + 
Sbjct: 357 RL 358


>gi|255034852|ref|YP_003085473.1| permease YjgP/YjgQ family protein [Dyadobacter fermentans DSM
           18053]
 gi|254947608|gb|ACT92308.1| permease YjgP/YjgQ family protein [Dyadobacter fermentans DSM
           18053]
          Length = 498

 Score = 76.2 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 91/276 (32%), Gaps = 8/276 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  IL      F+++   +VF+  +  ++  I+   S   ++    ++  +     
Sbjct: 1   MKKLDKLILTSFWGPFVITMSVVVFVFLMRIMIFYIDDFVSKDLNVMDYAQLFFFFSLIT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++    EL  I + G S +  + P+  +A+ +S+F F   + 
Sbjct: 61  VPTALPLAMLLSSLMAFGNLGEFFELTAIKSAGISVVRAMAPLFIVAVGISVFSFYFNDR 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P        L    +       ++E +F+       IK+ +   N  + G+ I     
Sbjct: 121 VSPWANLKGYSLLYDIKTTKATLKIKEGIFYNDLPGYSIKVDEKLENGKMTGMVIYKHNS 180

Query: 181 T----QTHKIYYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSYTLQTES 232
                   +I  A SG +    +       L +G  +     S     +   S       
Sbjct: 181 RSYEFGNTEIILADSGRMYSINENRYLVIELYNGTRYTDEQGSASSRPVYISSPAGTQTP 240

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETY 268
            ++       + +    L +      +        +
Sbjct: 241 YSNFNRQSFRHYRMTESLASFGMKRTDEGQFKYHEF 276



 Score = 51.2 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/247 (9%), Positives = 68/247 (27%), Gaps = 4/247 (1%)

Query: 114 LFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
              + +           Q         +F +                  ++  +  ++ I
Sbjct: 221 QGSASSRPVYISSPAGTQTPYSNFNRQSFRHYRMTESLASFGMKRTDEGQFKYHEFMKNI 280

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
             +          Y     ++    Q     +        I     I    +  +     
Sbjct: 281 SDLTHTADSLRTSYQETKKNLVSGSQQYYSYNYREGTDKTIKPGKWIDSLVTRPVSDSLK 340

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                  KA   ++   +    +    + +    Y  E H + TQ L  +I  LI    A
Sbjct: 341 KEILTNTKAASNSMLSYIKSQQDYLQTKLKDASKYELEKHHKYTQALSCLIMFLIG---A 397

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLL 352
              A++++     P+ +S+     ++   +     +++    +P+  ++    +    + 
Sbjct: 398 PLGAIIKKGGFGVPVLVSILFFILLYVLTNQGDKWVKEGLVAVPVGAWMANTILFLTGMY 457

Query: 353 MIKKKYT 359
            I +  +
Sbjct: 458 FIDRARS 464


>gi|121595375|ref|YP_987271.1| permease [Acidovorax sp. JS42]
 gi|120607455|gb|ABM43195.1| permease YjgP/YjgQ family protein [Acidovorax sp. JS42]
          Length = 396

 Score = 76.2 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 125/361 (34%), Gaps = 17/361 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y +R      L +   ++    + ++L+  ++ +S+  S+  +L ++  L+P  L 
Sbjct: 8   RLDRYAVRLFAVPLLTALATMLLATMLQRLLRLFDIAASTGASIASVLLLAADLVPHYLG 67

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P  F          M  ++EL  +  TG S   +  P   LA+ + +F       ++
Sbjct: 68  LALPVAFTAAIFMAAARMGDDSELDAMLATGRSIARIAAPYFILALFVCVFNLYLFGRLQ 127

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  R                + +EEN F  +         +            ++ R   
Sbjct: 128 PLARYDYHVKMDAVLQTNWDAKIEENRFIDIAHGFSFSADRVEDGGRRFIGVFMERRQNG 187

Query: 183 THKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSY--TLQTESANSS 236
             +I  A  G ++ +    +  + L DG   R++P     +      Y        A   
Sbjct: 188 IEEITTAVRGQLESNPDTRKMRLKLEDGLRVRQTPDGAIATTRFVDGYVEDFSKTRAPYR 247

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                A ++ L  L        +          +EFH RL + L P++     ++A    
Sbjct: 248 DRGETATERTLPELWLAMCKTCDPDS------AAEFHSRLARALLPLLLP---LLALPLG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFLLMIK 355
              ++ ++   +  + S++  +          + ++      L ++  F + ++  L I 
Sbjct: 299 MASKRGRRTPGVVFA-SLALLLLNHTLQFGKSLAESGRLPAALAVWTPFLLFALLSLWIF 357

Query: 356 K 356
           +
Sbjct: 358 R 358


>gi|87306338|ref|ZP_01088485.1| hypothetical protein DSM3645_08402 [Blastopirellula marina DSM
           3645]
 gi|87290517|gb|EAQ82404.1| hypothetical protein DSM3645_08402 [Blastopirellula marina DSM
           3645]
          Length = 379

 Score = 76.2 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 51/377 (13%), Positives = 107/377 (28%), Gaps = 30/377 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-----SLNILLKISGY 55
           M   + Y+L    +SFL+  +    +  VI     ++      E     +  IL      
Sbjct: 1   MYIIDRYLLTQFIKSFLIFFISFTGLYVVIDSFNNLDEFLRYGEQTGRGAFPILFDYYTP 60

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
            I T   M       +     +T + R+ E+  +   G ++  +++PV+    L++I   
Sbjct: 61  RIFTFFNMTGGILTLIAAMFTVTWLQRHNEMTALMAAGITKERIVRPVIIAVGLIAILGA 120

Query: 116 ISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           ++   + P+    + + +    L  +   L+       D  +    +  N        F 
Sbjct: 121 LNREFVVPEYSDALSRNAQDW-LGESAKQLQPKYDNLTDVLISGNHTFANELRIEAPKFR 179

Query: 176 VDSRDTQTHKIYYAQSGSIDLDR---------------------QAIILNDGEVHRKSPI 214
           +            A +                             ++   DG V    P 
Sbjct: 180 LPRSQPGVGTKINAVNAFFKPAEADRPSGYLLDEVTEPENLAEIPSLTDRDGSVFVLMPQ 239

Query: 215 SKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHK 274
                         +      +      +  +   L++   N            R E H 
Sbjct: 240 DNAWLAPNQCFVVSELTFEQLTASREWRSSASTWALISALRNRSLDFG---ADVRVEIHS 296

Query: 275 RLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           RLTQ    +   L+ +    K         +      + + FGV      +      +P 
Sbjct: 297 RLTQPFLDMTLLLLGLPLVLKNDNRNVFVAVGLCGAVVVLFFGVTMASRGLGANYMVSPA 356

Query: 335 YIPILYLFLFCISSIFL 351
           +     L LF   + ++
Sbjct: 357 FAAWFPLMLFVPFATYM 373


>gi|163856081|ref|YP_001630380.1| hypothetical protein Bpet1772 [Bordetella petrii DSM 12804]
 gi|163259809|emb|CAP42110.1| putative membrane protein [Bordetella petrii]
          Length = 397

 Score = 76.2 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 126/360 (35%), Gaps = 8/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I     +    +V +   + +++ +   +  T   +++L ++ +   T 
Sbjct: 31  MSLFKRSVVAEITSHAGVVFSTLVVVWLSVLLVRLLGEAAGGTIGADVVLGLAAFSTITA 90

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP V      +     +T   R +E+++   +G S    ++PVL +AI ++  + +   +
Sbjct: 91  LPTVLAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWLRPVLRVAIPVAGLVAVLTLV 150

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSR 179
             P     I +   + +     S +    F    +        +    +   G       
Sbjct: 151 ASPWAYRQIAEYRERFEQRSDLSKVTAGQFAESGEGQRVFFAEEPTQASDELGNVFARET 210

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
             + H +  A S  I       + ++L  G  +   P + +I ++ F  Y ++ ES +  
Sbjct: 211 GPEWHSVMTASSARIETEPNGDRFLVLGRGHRYDLKPGTPEIRLVDFAKYGVRLESKSGD 270

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            I         S    P         +      S+   R++  L  +   L++I      
Sbjct: 271 PIAEARAAAERSSKARPTMQLVADDTDSS---WSQIMWRVSMPLAALNLALLAIPLGAVN 327

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             + +   +    + + + +      S       + P+ I +  +    ++    L++++
Sbjct: 328 PRLGRSGDLLIAGL-VGLLYMNVINLSRAWISSGKLPFGIGVWAVHAVVLALAGYLLMRR 386


>gi|86133416|ref|ZP_01051998.1| predicted permease YjgP/YjgQ family [Polaribacter sp. MED152]
 gi|85820279|gb|EAQ41426.1| predicted permease YjgP/YjgQ family [Polaribacter sp. MED152]
          Length = 483

 Score = 75.8 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 85/251 (33%), Gaps = 16/251 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+     F+ + L ++F+  +  + Q    ++    S+  +LK   Y    +
Sbjct: 1   MKILDKYILKSFLVPFIATFLIVLFVLVMQALWQAFENIAGKGISVIFILKFLYYTTLMI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +   L ++  N E     + G S   L++P+  LAI LS   F+  N 
Sbjct: 61  IPQALPIGVLLSSIMALGNLGENYEFAAAKSAGVSLQRLVRPIGILAIALSGLNFLFLNN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS-- 178
           + P      + L    +       L    F        IK  +           +     
Sbjct: 121 VFPYANLKQRNLYLNIKKKKPALALVPGSFNADIPGYQIKFDEKYGEEENLLKKVWIYDL 180

Query: 179 -RDTQTHKIYYAQSGSIDLDR----QAIILNDGEVHR---------KSPISKDISIMKFK 224
             +    K+  A+SG I  +        IL +G  +                  S   FK
Sbjct: 181 TSNRGNQKVITAESGKIVTEEGSRYMTFILYNGNYYEEHVKSARTTIKRKKMAASSATFK 240

Query: 225 SYTLQTESANS 235
            Y    +  ++
Sbjct: 241 EYEFNIDIGDT 251



 Score = 44.2 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 50/107 (46%), Gaps = 4/107 (3%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           +N N ++  +  +++  Y +E++ R+   L  VI   I    A   +++R+     P+ +
Sbjct: 348 INNNLDSIKWNRKMVNFYDTEYYNRVAFSLSCVILFFIG---APLGSIIRKGGFGLPMIL 404

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMIKK 356
           ++++    F+  ++  +  E++     +  ++    +  + +L+  +
Sbjct: 405 AIAVYVLYFFTNTFGKNLAEESSITSILGSWISAILMIPLAILLTNR 451


>gi|191172497|ref|ZP_03034037.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
 gi|300993119|ref|ZP_07180205.1| hypothetical protein HMPREF9553_04259 [Escherichia coli MS 200-1]
 gi|190907165|gb|EDV66764.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
 gi|300305134|gb|EFJ59654.1| hypothetical protein HMPREF9553_04259 [Escherichia coli MS 200-1]
 gi|324011925|gb|EGB81144.1| hypothetical protein HMPREF9533_04083 [Escherichia coli MS 60-1]
          Length = 356

 Score = 75.8 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 145/365 (39%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     +  +
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLD-QS 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +K   ++++ L             +     +E   R ++ L  ++     ++A     
Sbjct: 240 ANVKRKAKSVTEL----------ARSVFPADHAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           L  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 LKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|121601841|ref|YP_988822.1| YjgP/YjgQ permease [Bartonella bacilliformis KC583]
 gi|120614018|gb|ABM44619.1| putative permease, YjgP/YjgQ family [Bartonella bacilliformis
           KC583]
          Length = 363

 Score = 75.8 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 109/351 (31%), Gaps = 5/351 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
               Y      R      L    +A++I  ++  + ++S    +    L IS   IP ++
Sbjct: 5   ILGRYFFIQYLRITCYFLLGAFILAFLIDFIENSSRLTSLPHYTTKGALLISFLRIPLIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF        +L S+NR  EL+I  + G S    + P  F A  L +      N  
Sbjct: 65  QQLFPFIALFSAITMLISLNRKFELVIARSIGVSAWQFLMPACFGAFFLGLVAIFLFNPF 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
                S  +++ A+       + L  +          +  +     +       + +   
Sbjct: 125 AAWGYSQAEKIIAEWHSNNVQTSLNNHRIPWFTQHTDLGTTTIGAKSITDEGLSLINAIF 184

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
             +         I   +  +  +   +   +         KF  + ++T           
Sbjct: 185 VQYNEDATIKNWIHAQKATLTNSAWFLTHGTIYKTGHIPEKFAEFWIETNLKPEFLTEYL 244

Query: 242 ANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           A+    SF  L                +       +      V   LI+   + K   + 
Sbjct: 245 ADPATTSFYKLPKKIAVARSFGYSANKFDMYLQSLIALPALLVAMTLIAATVSLKFTRLE 304

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           Q  K   + +S  I+  V +  S ++       Y  PI+  ++  I ++FL
Sbjct: 305 QSGK---LILSGVIAGFVLYVISVLVRAFGNAGYIPPIIAAWVPVIIALFL 352


>gi|301168568|emb|CBW28158.1| putative transport-related membrane protein [Bacteriovorax marinus
           SJ]
          Length = 368

 Score = 75.8 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 52/371 (14%), Positives = 119/371 (32%), Gaps = 14/371 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      IL+   + F  S + +  +  V      I+       +   ++      IP  
Sbjct: 1   MGILRKLILKEWFKFFAGSVIALFLLVSV---ANLISGFLRGNVTATEVMINHFIEIPGY 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    M +   +  +   +EL  I   G SR   I  ++F +++++I  F+  + 
Sbjct: 58  LNKIFPVSCLMASLFSINKLKTRSELTAIFAAGYSRKNYIIDLIFASLIVTIVQFMMTSY 117

Query: 121 IEPKCRSTIKQLSAKAQLALT--------FSYLEENLFFRLDDDLYIKISKYNPNNTLQG 172
           I P  +S  + L +++    +         S +     +   DD +I  + YN       
Sbjct: 118 ISPFFKSQRENLISESTHKFSNLKSQGLRSSTIGSGKMWYRSDDYFIAFTNYNQIKKELY 177

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
              +      ++         +  ++   I  +        +       + K   +    
Sbjct: 178 NVTLYKLSADSYLEEIQAMQKVYWEKGIWIGKNVIKLDGLNLKSFPKAEENKENIINLYE 237

Query: 233 ANSSTIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                  ++A+   L+ + L    +        +  Y   F+ +    +  +IF +++ V
Sbjct: 238 TPEELRQIEADITILNIVKLWKYIDQLKTSGININEYMVLFYDKFANSIICIIFAILASV 297

Query: 292 AADKR--ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +            K I  +F    + + V+     + +  +  P          F I  I
Sbjct: 298 SVFNPNRRSSSFGKNIAAVFFFTILYWLVYSYLIELGNNSKVPPIAATFTVPIAFTIILI 357

Query: 350 FLLMIKKKYTK 360
            +    +K  K
Sbjct: 358 VIFSRNRKLAK 368


>gi|134095577|ref|YP_001100652.1| hypothetical protein HEAR2400 [Herminiimonas arsenicoxydans]
 gi|133739480|emb|CAL62531.1| putative permease [Herminiimonas arsenicoxydans]
          Length = 347

 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 103/315 (32%), Gaps = 16/315 (5%)

Query: 32  ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           +++ +   +    +   ++ + G+     LP++      M    V+T   +++E+++   
Sbjct: 2   LIRILGQAAGGKVASADVVALIGFSALNYLPIILNLAGFMSVLLVVTRSYQDSEMVVWFA 61

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
           +G S    I PVL  A+ + +   +    + P           +       + +    F 
Sbjct: 62  SGLSLARWIPPVLVFALPIVVMTTLLSLFLTPWSNQQSAIYKERYANREDIARVSPGKFQ 121

Query: 152 RLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSG----SIDLDRQAIILNDGE 207
                  +   +    ++ +   I  S                        + ++++ G 
Sbjct: 122 ESSSSDRVFFVEGVAGDSSKVRNIFVSSVRNGKTSVVVAKEGTVEIDPAGDKFLVMHQGR 181

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
            +   P   D  +M+F  Y +   S + + +   +     +  L  N NN N        
Sbjct: 182 RYDGVPTQSDFQLMEFDRYGVLVASQSQALVGDTSARALTTQELLRNRNNFNDG------ 235

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
              E   R++  L  V+  L++I       +  +  +   + I+L +        SY   
Sbjct: 236 ---ELLWRVSLPLMGVLLMLLAIPLGF---VNPRGGRSANLLIALFLFVFYSNMLSYAQA 289

Query: 328 KIEQNPYYIPILYLF 342
            + QN     + +  
Sbjct: 290 IVVQNRAAFMMAWWP 304


>gi|167645643|ref|YP_001683306.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
 gi|167348073|gb|ABZ70808.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
          Length = 409

 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 122/363 (33%), Gaps = 5/363 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + Y+LR +    +      V    + ++L+ ++++S S+     +  ++  L+P  L
Sbjct: 15  RLIDAYLLRLLVWPIVGCLGVTVIALLLERVLRLLDVLSQSSARFGYVTSLAANLVPHYL 74

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +    V+T ++  +E+  +  +G S   +  P + + + L +F  I    +
Sbjct: 75  GLALPVAFFVALFIVITKLSDGSEIDALLASGQSLTRIAAPFVSVGVFLMVFSLIVFGYM 134

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           +P  R   + +  +A  A     L    F      L            L+ +FI      
Sbjct: 135 QPYSRYAYRAVMHEAINAGWNGKLNGGSFIDEPKLLMTADDADAAGQQLKRVFIRRLDVN 194

Query: 182 QTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDIS-IMKFKSYTLQTESANSS 236
              ++  A +  +  D       ++L +G+           + +    +  +    A + 
Sbjct: 195 GNEEVITAATADLRADHDAKSVTMLLRNGQRIGVDARGAYRTLMFDQLTTQVPLAGAAAL 254

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                 +++ L+        N         T  +E + RL + LF     L++       
Sbjct: 255 LRARGGDERELTLGELARQANTPNSVVPRATLLAELYGRLARALFLPFLPLLAFPLGLAA 314

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               +   +    + L            +    +  P         +F   S+++ +  +
Sbjct: 315 KRGNRTPGLIIAGVLLLAFQHSLQLGQSLAESGKAMPLAAIGTPWLIFTGLSLWMFIGSR 374

Query: 357 KYT 359
           K  
Sbjct: 375 KRP 377


>gi|49475338|ref|YP_033379.1| hypothetical protein BH05440 [Bartonella henselae str. Houston-1]
 gi|49238144|emb|CAF27352.1| Hypothetical transmembrane protein [Bartonella henselae str.
           Houston-1]
          Length = 365

 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 96/357 (26%), Gaps = 15/357 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +        I  +A +I   +    +SS    +      IS   IP ++
Sbjct: 5   TLGQYFFIRYLKMTCYFLGGIFVLALLIDFTENSGRLSSLPRYTAKDAFLISVLRIPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF------ 115
             + PF        +L S+NR +EL++  + G S    + P  F A L  +F        
Sbjct: 65  QQLIPFIALFSAMAMLISLNRKSELVVTRSIGISAWQFLMPACFGAFLFGLFSILLVNPL 124

Query: 116 -ISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
                    +  +  +  +     +L  + +             I               
Sbjct: 125 AAWGFSQAERMMTEWRSKNNNVLTSLHNTRILWLTQRTHSGRTTIGAKSITDQGLSLIDA 184

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                +       +  S    L   A +L DG +++                    +   
Sbjct: 185 TFVQYNDNATIKNWINSRKATLINGAWLLTDGTIYKI---GHPPEKFSELQIQTTLKPEF 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +  ++         L                 +       +      +   LI+ V + 
Sbjct: 242 LTERLVNPATIPFYQLPTKIM-IARSFGYSANNFDMYLQSLIALPALLIAMTLIAAVVSL 300

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                 +  +   + +   I+    +  S ++       Y  PI+  +     ++FL
Sbjct: 301 N---FTRFGQSKILILGGVIAGFSLYVISILVQAFGNAGYIPPIIAAWTPVFIALFL 354


>gi|332297890|ref|YP_004439812.1| permease YjgP/YjgQ family protein [Treponema brennaborense DSM
           12168]
 gi|332180993|gb|AEE16681.1| permease YjgP/YjgQ family protein [Treponema brennaborense DSM
           12168]
          Length = 381

 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/369 (14%), Positives = 122/369 (33%), Gaps = 19/369 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
             LY+++ +   F ++ +F   + +V QIL     V      L  +LK+  Y +P ++  
Sbjct: 17  LILYLVKELLLYFFIAFVFFFMVFFVNQILLMAEDVLKKRVPLADVLKLISYSLPFIIAQ 76

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             PF   +     L  M  + E+LI+   G S   ++ P L L + +SI  F   + + P
Sbjct: 77  SAPFATLVGFLMCLGRMMSDNEILILRAAGKSFAVILVPALLLGLAISILSFFVNDYLLP 136

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
               +  +L     ++       E+   +  +   + I   +       IF         
Sbjct: 137 LGTISYNKLYRSILMSDPSIE-LESNSIKRTESATLVIGDVSGRTVSDLIFFDTDPQGTR 195

Query: 184 HKIYYAQSGSIDLDRQAIILNDGE-------VHRKSPISKDISIMKFKSYTLQTESANSS 236
             I    +  ++     +++             +    + D+   +     + T S  SS
Sbjct: 196 RVIVSGTADIVNSQNPDVLMQLDMDNARVLFFDKTEKRNYDMMSAEQTRMNVFTSSLFSS 255

Query: 237 TIVLKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +      +     L   +             L  Y  E++K+ +     + F L+++  A
Sbjct: 256 SAYTNPREMTSYDLRTMIRNMKTQQEKSSLQLNMYELEYYKKFSLPFGSLFFALLAMPIA 315

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF-----CISS 348
                   +     I + + ++   +W    +               ++L          
Sbjct: 316 ILFGKHNGQTIGLIIGLFICVA---YWAAMILGQTFGIREGLSGFWTMWLPDLCVGAAGC 372

Query: 349 IFLLMIKKK 357
            F L++ ++
Sbjct: 373 AFYLVLVRR 381


>gi|294341186|emb|CAZ89587.1| putative permease YjgP/YjgQ [Thiomonas sp. 3As]
          Length = 377

 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 110/332 (33%), Gaps = 5/332 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +L + R + R+F  +   +  +   + +++ +   S    S   +  + G    + L 
Sbjct: 2   LLDLTLRREMSRNFGGAFTVLFTVVITLMLIRILGQASDGQASPQDVFLLIGLTALSYLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V      +      T M  ++E+ I   TG  R+ L+  VL  +  + + +        
Sbjct: 62  IVITLSLFLAVLLTFTRMWLDSEMTIWRTTGVGRLRLMISVLRFSWPILLLIAALTLFAW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDT 181
           P        L  + +     S +    F           I K      +     +    +
Sbjct: 122 PWANQQSTALRIRFEQRSDISRVAPGQFRESASGKRVFFIDKGAQAGGVAHDIFIRDDTS 181

Query: 182 QTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
               +  A+S  +     +  ++L++G  +  +P   + +I  F S  ++ ++    + V
Sbjct: 182 GQTVLITARSAQVQRIDGQPFLVLSNGNRYAHTPGQANYTITSFDSLDMRLDATIGLSNV 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE--TYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                  +++L  PN N P           +  E   RL   L   +  L+++  A    
Sbjct: 242 ADNKTGPVNWLTQPNRNVPTEYLFNPAIPNWLGELSWRLGVPLSAALLALMALPLASGSV 301

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
              +   +    +   I F +       I + 
Sbjct: 302 RTGRAGSLISAILVYLIYFNLLNVLQGWISEG 333


>gi|320335816|ref|YP_004172527.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
           21211]
 gi|319757105|gb|ADV68862.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
           21211]
          Length = 371

 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/342 (11%), Positives = 96/342 (28%), Gaps = 13/342 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K    Y+LR +   +++  L  + +     I   + ++ S   +      +    +P +
Sbjct: 25  LKKLAPYVLREVLPLYVVGALVFLLLTTTDLISGVVGILLSYHPTPRQAWLLYVTQVPRL 84

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L                  + +++EL      G   + L  P+L  A L+  F+F +   
Sbjct: 85  LNQSLILAIPFAVLVGFGRLAKDSELKATAAGGVRPLNLAWPLLLPAALIGAFVFYNGAY 144

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ ++                 +     +  D  L+   S+           +     
Sbjct: 145 LTPQAQAQWNTAWFSVYRQAPPPPVTTTYTYAQDGTLFS-ASRVETPQGATVANLTGVLV 203

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +   A +GS D   +   L  G V R           +F +     +    +    
Sbjct: 204 QTPTETITASTGSWDARAKTWTLPGGWVVRGDA-----RPAEFHTPRTFPQRDEIARPTP 258

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              +  L  L      +     +   TY+    +R       + F   +           
Sbjct: 259 PPAESTLPEL-RAELASGRLNVQERRTYQFNIARRYADAFTALGFAFAASALGLMVR--- 314

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
                     ++      F+     + ++  +    P L  +
Sbjct: 315 ---NRAWAVTNVVFLILGFYIVWSTVPQLAGSGALPPNLAAW 353


>gi|88803032|ref|ZP_01118559.1| putative permease [Polaribacter irgensii 23-P]
 gi|88781890|gb|EAR13068.1| putative permease [Polaribacter irgensii 23-P]
          Length = 482

 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 89/251 (35%), Gaps = 16/251 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+     FL + L ++F+  +  + Q    ++    S + +LK   Y   ++
Sbjct: 1   MKILDKYILKTFLGPFLATFLIVLFVLVMQLLWQTFENIAGKGISFSFILKFLYYTSLSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +   L S+  N E     ++G S   L++P++FL +LLS   F+  N 
Sbjct: 61  VPQAMPIAVLLSSIMALGSLGENYEFAAAKSSGISLQRLVRPLIFLTLLLSGINFLFLNN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS-- 178
           I P      + L    +       L    F        IK  +           ++    
Sbjct: 121 IFPYAILKQQNLYYNIKKKKPALALIPGSFNSDLPGYQIKFDEKYGEEKNLLKNVLIYDL 180

Query: 179 -RDTQTHKIYYAQSGSIDLDR----QAIILNDGEVHRK---------SPISKDISIMKFK 224
                  KI  A+ G I  +        IL DG  +              +   S   FK
Sbjct: 181 SSSKGNQKIITAKRGKIISEEGSRYMTFILYDGYYYEDHTKTTRSYSKKKNMPASQATFK 240

Query: 225 SYTLQTESANS 235
            Y    + ++ 
Sbjct: 241 EYEFNIDISDL 251



 Score = 42.7 bits (98), Expect = 0.082,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
            ++ + L  + SE++ R+      +I   I    A   +++R+     P+ ++++I    
Sbjct: 357 KWKRKTLNFFDSEYYGRIALSFSCLILFFIG---APLGSIIRKGGFGLPMILAIAIYVTY 413

Query: 319 FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           F+G +   +  E++     +       +   F + + ++ TK
Sbjct: 414 FFGNTMGKNLAEESSISAVLGSWISAMVMIPFGIFLTRRATK 455


>gi|256420369|ref|YP_003121022.1| permease YjgP/YjgQ family protein [Chitinophaga pinensis DSM 2588]
 gi|256035277|gb|ACU58821.1| permease YjgP/YjgQ family protein [Chitinophaga pinensis DSM 2588]
          Length = 478

 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 85/205 (41%), Gaps = 1/205 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  +++     F+ +    +F+  +  + + I+ +        +++++  Y    +
Sbjct: 1   MKKLDKLLIKTFMGPFVATFFVTLFVLVMQFLWKYIDDLVGKGLDTPVIIELITYTSANL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + +     ++  + EL+ + ++G S    ++P+L +  +++I  F+  N 
Sbjct: 61  VSLALPLAVLLSSIMTFGNLGESFELVALKSSGISLTRFMRPLLAVCTMIAILAFLFNNY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P      K L      +     ++  +F+    D  IK+++    N T+  + I+D  
Sbjct: 121 AMPVANLRAKSLLYDITNSKPAFNIKAGVFYTDIPDYTIKVAEKEKDNKTIHQVMIIDHT 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILN 204
                K+  A+ G++ L      L 
Sbjct: 181 PGGGDKVILAEKGTMLLSADKRFLY 205



 Score = 39.2 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
           ++ E+ ++ T     ++  LI    A   +++R+     P+  ++         F     
Sbjct: 359 HKVEWQRKFTLAFSCIVMFLIG---APLGSIIRKGGLGTPLIFAVVFFVIFNIFFMVGEK 415

Query: 328 KIEQNPYY-IPILYLFLFCISSIFLLMIKK 356
              ++       ++L    +  I + +I K
Sbjct: 416 MARKDVMATWSGMWLSNIVLIPIAMFLIYK 445


>gi|313680814|ref|YP_004058553.1| permease yjgp/yjgq family protein [Oceanithermus profundus DSM
           14977]
 gi|313153529|gb|ADR37380.1| permease YjgP/YjgQ family protein [Oceanithermus profundus DSM
           14977]
          Length = 335

 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 104/353 (29%), Gaps = 21/353 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+LR I   +L+  L  + +     +     +  S   +   + ++  Y +P  L +
Sbjct: 2   LQRYLLREILTPYLLGTLLFIGLVTTDLLSSLSGVFLSRGTTWTQVGELVLYRMPYTLGV 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P          L    R++EL  +   G + + L+ PVL LA  ++   +++   ++P
Sbjct: 62  ALPLGLVFAVLVALARWIRDSELKAVYAAGIAPVRLLAPVLGLAAFVAAVAWVNAGWVKP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           + ++    L  +       S +  N  +           +  P++   G        T  
Sbjct: 122 EAQARYDDLIYEIYYGHAPSGVLTNAAYAPQGLGVYYARRVYPDDAGGGRLQGVRVVTPD 181

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
             ++ A  G         +L +         +   +  +F         +          
Sbjct: 182 GAVWSADEGVW--KDANWVLKNAW------KTAPGARPEFWETIPLPFPSRFVEKKTTYE 233

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
              ++ L      +P          R    +R    +  +    ++ V            
Sbjct: 234 SLPMAELRELAKVDPQA--------RFPLQRRHADAVGVIALAWLAAVVGLSLREA---- 281

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   + + FG +  ++                +L      ++ L   ++
Sbjct: 282 -AWAFVAVVLLIFGYYVLWTLAAQLARFAVVGPYGAWLADVVYFALALAGTRR 333


>gi|309794091|ref|ZP_07688516.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|308122498|gb|EFO59760.1| conserved hypothetical protein [Escherichia coli MS 145-7]
          Length = 356

 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 142/365 (38%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+      +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLLVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSAFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +  ++ +   +     +   +F+G       +       IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYTKI 361
            ++ +
Sbjct: 347 DFSLL 351


>gi|325279047|ref|YP_004251589.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
           20712]
 gi|324310856|gb|ADY31409.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
           20712]
          Length = 487

 Score = 75.0 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 91/239 (38%), Gaps = 6/239 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   +++L+     F+ +    +F+  +  + + I+ +        ++ ++  Y+  T+
Sbjct: 1   MKKLHIFMLKSFIGPFVATFFISMFVLIMQFLWRMIDEIVGKGLEFTVIAELLIYVATTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +     S+  N EL+ + + G S   ++KP++ L I L++F F+  N 
Sbjct: 61  VPMALPLAVLLSSIMTFGSLGENYELIALKSAGISLYRIMKPLIILIICLTVFAFVFSNN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           I P        L    +        +E +F    +   IKI K N    +     I + +
Sbjct: 121 ILPVANLKFYSLLYDIRKQKPEMSFKEGIFTNDLEGYSIKIDKINKETGMMYNMLIYEHK 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAI-----ILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           D   +         + +          +L +G  +    +    S   F    L+ +  
Sbjct: 181 DGSGNYDVTKADSGMMISDAKSNLMELVLYNGHSYTDEGMKNPSSRKTFPFRRLKFDKE 239



 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
              E    +        + +      + +    + E +   + E+H++ T      IF  
Sbjct: 329 FDIEEQRRAVDNALQYAREVKQRNQDDLHYYVAQQENVIKSQLEWHRKFTLSFACFIFFF 388

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFC 345
           I    A   A++R+     P+ +S+ + F +++  S +  +  +     P   +++  F 
Sbjct: 389 IG---APLGAIIRKGGLGMPVVVSVLL-FIIYYIISMMGERSAREAVISPAAGMWISAFI 444

Query: 346 ISSIFLLMIKK 356
           +  + +++  K
Sbjct: 445 LLPLGIILTYK 455


>gi|221211523|ref|ZP_03584502.1| putative membrane protein [Burkholderia multivorans CGD1]
 gi|221168884|gb|EEE01352.1| putative membrane protein [Burkholderia multivorans CGD1]
          Length = 326

 Score = 75.0 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/322 (11%), Positives = 92/322 (28%), Gaps = 25/322 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFIFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF---------FRLDDDLYIKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++                ++ +    P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLAPDSTIS 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS---------------K 216
            + I +       K                +L        +PI                 
Sbjct: 181 NVRIYEFDAKFQLKNVRIAQTGRYEPPGHWLLKGVTETELTPIQPIAGQAPDALNPVYRS 240

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
               +              S +++     ++  L      +     +  + Y     ++L
Sbjct: 241 QQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFR-YIQHLRENHQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRAL 298
                  +  ++S+  A     
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTR 321


>gi|242240955|ref|YP_002989136.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech703]
 gi|242133012|gb|ACS87314.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech703]
          Length = 366

 Score = 75.0 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 129/354 (36%), Gaps = 19/354 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETFKSQVAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLSLLGLGVPQMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G  +  L+K  L LA+L  +   ++   + 
Sbjct: 62  LILPLSLFLGLLMTYGKLYAESEITVMHACGLGKSVLLKASLLLAVLTVLLAMVNVLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DSRD 180
           P       ++ A+A+     + + E  F +  D   +           + IF+     R+
Sbjct: 122 PWSSRHQDEVLAEARANPGVASMVEGQFQQTQDGNSVLFVGNVSGQDFERIFMAQLHPRE 181

Query: 181 TQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G I   +   Q + LN G  +  + + +D  I  F +Y       + + 
Sbjct: 182 NTRPSVVVADRGHIVARNDGAQIVTLNKGVRYEGTAMLRDFRITDFVNYQAVMGHQDVAI 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   ++  L +                R+EFH RLT  L  +I  ++         
Sbjct: 242 DPTNVEQMDMKTLWS----------SPDIAARAEFHWRLTLVLSVLIMAVM---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +  ++ ++  +  ++ +    F   S +     +     P+++++L  +    +
Sbjct: 289 INPRQGRVLSMLPAMLLYLVFFLLQSSLRSNASK-GKLDPLMWMWLTNLVYFGI 341


>gi|45658408|ref|YP_002494.1| hypothetical protein LIC12569 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601651|gb|AAS71131.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 631

 Score = 75.0 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 61/191 (31%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YILR I   FL+S  F   +  V+ + + I L          LL   GYL+   LP
Sbjct: 131 ILDRYILREIFSPFLVSLAFFTMVYMVLALQKMIGLFVGKGVDPFRLLDYFGYLLANTLP 190

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M  P    M        ++ ++E+  I + G S   +    L    ++++ +      + 
Sbjct: 191 MTIPMACLMSGIMAAGRLSGDSEITAIRSAGVSFPRIYINFLAFGFVMALLVGYLNFYLS 250

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+    + + +           +    F         +                + +  Q
Sbjct: 251 PENTRKMNEFNKWILAYNPLLAITPGQFSGDKTQDLFEKRARTMYTEGMNSNTGELKGVQ 310

Query: 183 THKIYYAQSGS 193
             +      G+
Sbjct: 311 IREWEIFLEGN 321



 Score = 60.4 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 1/98 (1%)

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
               ++L  +  E H+R+   +  +IF  IS           +        + L I F  
Sbjct: 491 QQGKKVLTDFNVEIHRRIAMPISCLIFFFISFPLGLVVKRSGKGMSFTLAVVFLMIYFTF 550

Query: 319 FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           F   S I +  +   +  P     L  + SI + MIK+
Sbjct: 551 FTLGSTISYNDKIPDWIGPWSANILIALLSINI-MIKR 587


>gi|198283963|ref|YP_002220284.1| permease YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|198248484|gb|ACH84077.1| permease YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
          Length = 368

 Score = 75.0 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 131/355 (36%), Gaps = 11/355 (3%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           ++R +  SFL++ L ++ I  + Q+ Q +  V+S    L+I+L++ G  +PT+L MV P 
Sbjct: 3   VVRNLTISFLLTSLVVLAILAIGQLTQLLRQVASGQLPLSIILRLLGLALPTLLVMVLPL 62

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
            F      V +++ R+ E++ I +TGT    L+ PV  +A  +     I      P  + 
Sbjct: 63  AFFFAVYLVFSNLYRSNEMVAIRSTGTGLSGLLPPVAVVAACVFCLELILSLSWAPGAQR 122

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            ++  S +   A   + L+   F  L     I + +    N+ +   I  S         
Sbjct: 123 ELQSESVRLANAAAEAMLQPGSFTNLPGGRVIYVGQAVGKNSHRFQEIFLSVAQGGQLDM 182

Query: 188 ----YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
               Y +          ++L DG+ +   P      ++ F  Y +  ++ ++        
Sbjct: 183 ATAAYGEVKPAQDGALTLVLVDGQRYLGQPGKAGFKVLSFARYRVLLDNQDTGGAEPGGI 242

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
           + + + L              +    SE   RL   L   +     +      +  R   
Sbjct: 243 NWSSASLPQLVR---QLHGTGMRFAVSELEWRLLWPLALPLLA--LLAIPLAYSEPRGGG 297

Query: 304 KIHPIFISLSISFGVFWGFSYIIH--KIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +   + + +     V     Y+         P +  +L++ L  ++       ++
Sbjct: 298 RAAGMLVGILFLLAVNNIVVYVKEHMMNGSMPIFPGLLWVLLLILAVAAYAFFRR 352


>gi|83945295|ref|ZP_00957644.1| hypothetical protein OA2633_00970 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851465|gb|EAP89321.1| hypothetical protein OA2633_00970 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 367

 Score = 75.0 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/363 (11%), Positives = 91/363 (25%), Gaps = 20/363 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
               Y+        + + + I  +  +I  ++    + +    S    L +S    P ++
Sbjct: 4   RLWRYLFIQTLIGLIGAAVIITAVILLIDFVETSRDIGTRVGISAFQALHLSLLKAPLLV 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF            +NR +EL+++  +G S   ++ PV  LA L      ++ N +
Sbjct: 64  QDTLPFIVLFGVLFTFFRLNRRSELIVMRASGYSAWRILAPVAILAALTGAISTLALNPL 123

Query: 122 EPKCRSTIKQLSA------------KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT 169
                +  +                     +         +  +                
Sbjct: 124 GAASNARFEATREALFEGEGQSSGANQSGPIWLRETTATGYIMITAQQQGGDDATLTEPV 183

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
            +   + +S      +   A+   +  +     L +   +         + +   +    
Sbjct: 184 FRQYVLSESGAPLLDRRITAERAEL--NGGFWSLTNAIEY---APGGQATELGDVALPTN 238

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                           +   L      +          Y   +H  L Q L  V   L+ 
Sbjct: 239 VGRQALFERARSPGAVSFWQL-PAVIASARDAGLSSLAYELRWHGLLAQPLMLVAAALMG 297

Query: 290 IVAAD-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           I A      L            +  I +        +       P         LF ++ 
Sbjct: 298 IAATLRLHRLGGAAGFAAAGATAGFILYFSQELMLGLGASGAITPLTAAWTTPALFSLAG 357

Query: 349 IFL 351
           +F 
Sbjct: 358 LFF 360


>gi|15639868|ref|NP_219318.1| hypothetical protein TP0883 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189026106|ref|YP_001933878.1| hypothetical protein TPASS_0883 [Treponema pallidum subsp. pallidum
           SS14]
 gi|3323200|gb|AAC26573.1| conserved hypothetical integral membrane protein [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189018681|gb|ACD71299.1| hypothetical integral membrane protein [Treponema pallidum subsp.
           pallidum SS14]
          Length = 365

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 111/344 (32%), Gaps = 7/344 (2%)

Query: 12  IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAM 71
               F +  +    I   I IL  +    S+    + L+KI    IP  + +  P     
Sbjct: 5   FLPIFFLVLVCASMILDAIDILVNLTQFISNGYRFSSLVKIWYVSIPHYVLLCCPLSVLF 64

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
             T  +  +    E L I   G S  +++ P       L+I +F  +N +    +S   +
Sbjct: 65  AATYTVRILYVQNEFLAIHFGGLSFFSIVGPWFGFMCFLAIGIFAFDNSVVVVSQSKKDE 124

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQS 191
           + A+       +   + +    D  +      Y+    +    +V  +++        ++
Sbjct: 125 IIARTVSYAQGNSENDVVASSFDGKIISIAGAYHRGQKVLVDMLVIMKNSNGTIQKLIEA 184

Query: 192 GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLL 251
            +    +   +L    V+  +   K +      S+ L+                ++   +
Sbjct: 185 HTAHWQKDRWVLIKPVVYTITHEMKLMVSEYLDSFELREPLELFDHQDFLTKGMSI-QKI 243

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
               +   Y  +        F+K+    L   I   +S       + +++R  I  IF S
Sbjct: 244 KETLHTLKYASKPHRELSIRFYKKFYFPLTMCIMLCLSF---LTGSFLKKRSLIMYIFCS 300

Query: 312 LSISFGVFWGFSYIIHKIEQ---NPYYIPILYLFLFCISSIFLL 352
           + ++   +      I    +   +P++     +  F     ++ 
Sbjct: 301 VVLASAYYVVEMTSIVCAREEYFSPFWGVFFPVLTFLFLIFYVW 344


>gi|149280024|ref|ZP_01886149.1| hypothetical protein PBAL39_24078 [Pedobacter sp. BAL39]
 gi|149229221|gb|EDM34615.1| hypothetical protein PBAL39_24078 [Pedobacter sp. BAL39]
          Length = 472

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 92/240 (38%), Gaps = 4/240 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   + +L+   R F ++   ++FI  +  + + ++ +        ++L++  Y     
Sbjct: 1   MKKIHVLLLKAFIRPFFVTFFIVMFILLMFFLFKYVDDLIGKGFEWYVILELMYYASAAN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    + +     ++  N EL+ I + G S    + P+L L   +SI  F   + 
Sbjct: 61  VSMALPLSILLSSIMTFGTLGENYELVAIKSAGISLQKAMMPLLVLITCISISSFFFSDY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK       L    +       ++E +F     +  I++ K   +       ++    
Sbjct: 121 MLPKANLKFGSLLWDIRNKKLSFLIKEGVFNSSIPNYSIRVDKKGADGVTLHNVMIYDHT 180

Query: 181 TQT--HKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +     KI  A+ G +  D + ++  L DG  + +S         + +   ++ +  +  
Sbjct: 181 SNNGIAKIIIAKEGKMASDDKYLLLKLKDGVRYEESSGKNASYNPRQELTRMRFKETDQK 240



 Score = 43.8 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
           +   R + +   + E+ K+ T     ++   I    A   A++R+     P+ +++   F
Sbjct: 350 DFEERTKNIIKVQIEYQKKFTLAFSCLLLFFIG---APLGAIIRKGGLGLPVVMAVVF-F 405

Query: 317 GVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
            ++   S +  K       +P    +L  I  
Sbjct: 406 LIYHVISTVAEKSALTGTLLPFFGPWLAIIVL 437


>gi|148244955|ref|YP_001219649.1| permease [Candidatus Vesicomyosocius okutanii HA]
 gi|146326782|dbj|BAF61925.1| permease [Candidatus Vesicomyosocius okutanii HA]
          Length = 360

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 119/339 (35%), Gaps = 1/339 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   LYI++ +    L+  L  + +      L  +  +     ++    K     IP V
Sbjct: 1   MKILTLYIVKTMAFYTLIVMLVWIGVYSFFNFLDEVKFIGQYNYTVFEATKYIILNIPAV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +   +     + +   LT++   ++L+II ++G S + +   V+++A++    + +   +
Sbjct: 61  MYSHSSVIILLGSLLALTNLASTSQLVIIRSSGVSIMQISNIVVWVALMFIAIIILIGEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + L +KA         ++  + + +         ++  +     FI     
Sbjct: 121 VAPITTEYAECLRSKALEQNMTCRNQQEFWLKDNGLFIHVKKDFDAKSFQDITFIKLRAP 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                I Y+ + + + +   +         K+      S   F+ Y++Q          L
Sbjct: 181 GVLDSIIYSDNATFNGNNLELNKPIHYQLSKNGELTTFSKNYFEKYSVQISFNQKLIKNL 240

Query: 241 KANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           K + + LS   L    +       + +    E +KR    +  V   L S++        
Sbjct: 241 KKDPRKLSTWHLYKQMSFLTNNNLVADIVEIEIYKRFMMPVTLVAMILFSMLFVFGSLRD 300

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
               K   + + +S+ F +      ++       +++  
Sbjct: 301 ASLGKKIFLGLMMSLFFELASRIIGVLSLTFNYNHFLSA 339


>gi|24213806|ref|NP_711287.1| hypothetical protein LA_1106 [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24194638|gb|AAN48305.1| hypothetical protein LA_1106 [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 631

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 61/191 (31%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YILR I   FL+S  F   +  V+ + + I L          LL   GYL+   LP
Sbjct: 131 ILDRYILREIFSPFLVSLAFFTMVYMVLALQKMIGLFVGKGVDPFRLLDYFGYLLANTLP 190

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M  P    M        ++ ++E+  I + G S   +    L    ++++ +      + 
Sbjct: 191 MTIPMACLMSGIMAAGRLSGDSEITAIRSAGVSFPRIYINFLAFGFVMALLVGYLNFYLS 250

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+    + + +           +    F         +                + +  Q
Sbjct: 251 PENTRKMNEFNKWILAYNPLLAITPGQFSGDKTQDLFEKRARTMYTEGMNSNTGELKGVQ 310

Query: 183 THKIYYAQSGS 193
             +      G+
Sbjct: 311 IREWEIFLEGN 321



 Score = 60.0 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 1/98 (1%)

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
               ++L  +  E H+R+   +  +IF  IS           +        + L I F  
Sbjct: 491 QQGKKVLTDFNVEIHRRIAMPISCLIFFFISFPLGLVVKRSGKGMSFTLAVVFLMIYFTF 550

Query: 319 FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           F   S I +  +   +  P     L  + SI + MIK+
Sbjct: 551 FTLGSTISYNDKIPDWIGPWSANILIALLSINI-MIKR 587


>gi|121730751|ref|ZP_01682851.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|121627676|gb|EAX60335.1| conserved hypothetical protein [Vibrio cholerae V52]
          Length = 289

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/290 (10%), Positives = 93/290 (32%), Gaps = 2/290 (0%)

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +     L ++  ++EL+++   G S++ +   VL  AI L I + +      P+ +
Sbjct: 1   MAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWGAPQAQ 60

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
             + +       +           +  D + +I I+K                + +   +
Sbjct: 61  -KMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVENEQLYGLNLWRFDENKKLSTV 119

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
            +++      + + ++ +       + I      +    +         + + +K  + +
Sbjct: 120 IFSEQVDYVANNEWLMKDAVLTRLVNDIEISKESLPEYRWRTSLAPDKLAVVTVKPEELS 179

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
           L+ L +   +      +    Y     +++TQ +   +  L+++                
Sbjct: 180 LTGL-SDYVHYLKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVTMGARI 238

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              +    +F +   F   +  +   P     L   L  ++    L+ +K
Sbjct: 239 LSGVIAGFTFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 288


>gi|148560142|ref|YP_001258668.1| hypothetical protein BOV_0678 [Brucella ovis ATCC 25840]
 gi|148371399|gb|ABQ61378.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
          Length = 362

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 102/354 (28%), Gaps = 12/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +  L   L I  +A ++   +  + +++    ++   L +S   +P ++
Sbjct: 5   TLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+NR  EL++  + G S    + P  F A+L  +      N +
Sbjct: 65  QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 124

Query: 122 EPKCRSTIK----QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
                S  +             ++            + +  I         T        
Sbjct: 125 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D Q +      + +  L      L D          ++   ++    + Q        
Sbjct: 185 QFDEQKNIKDRYDARTATLQDGYWELTDVMRF---ARGQEPQKLETFRISTQLRPEYVEE 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +        + L +               +  ++   L      +   LI+   +    
Sbjct: 242 KLASPETIPFTQLRHK-IEVARSFGYSANAFDMQYQSLLALPALLMAITLIAATVSL--K 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            VR  +    I   +   F ++   S ++       +  P +  ++  + + F 
Sbjct: 299 FVRFGQSGAMILGGVIAGFVLYVV-SVLVKAFGDAGFVPPFVAAWVPVVIATFF 351


>gi|110807999|ref|YP_691519.1| hypothetical protein SFV_4232 [Shigella flexneri 5 str. 8401]
 gi|110617547|gb|ABF06214.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 345

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 124/341 (36%), Gaps = 19/341 (5%)

Query: 23  IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNR 82
           ++ I +  ++++ +          N++L + G  +P +  ++ P    +     L  +  
Sbjct: 1   MLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYT 60

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
            +E+ ++   G S+  L+K  + LA+  +I   ++     P       ++ A+A+     
Sbjct: 61  ESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGM 120

Query: 143 SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGS---IDLD 197
           + L +  F +  +   +   +    +  + +F+   R        +  A SG    +   
Sbjct: 121 AALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDG 180

Query: 198 RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
            Q + LN G     + + +D  I  F+ Y         +      +  ++  L N + + 
Sbjct: 181 SQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTD- 239

Query: 258 PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG 317
                      R+E + R+T      +  L+         +  ++ ++  +  ++ +   
Sbjct: 240 ---------RARAELNWRITLVFTVFMMALM---VVPLSVVNPRQGRVLSMLPAMLLYLL 287

Query: 318 VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            F   + +     +     P L+++   +  + L ++   +
Sbjct: 288 FFLIQTSLKSNGGK-GKLDPTLWMWTVNLIYLALAIVLNLW 327


>gi|268315816|ref|YP_003289535.1| permease YjgP/YjgQ family protein [Rhodothermus marinus DSM 4252]
 gi|262333350|gb|ACY47147.1| permease YjgP/YjgQ family protein [Rhodothermus marinus DSM 4252]
          Length = 481

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 96/283 (33%), Gaps = 13/283 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK      L  +   FL     ++F+  +  +++ +  +      L ++L++  Y +  +
Sbjct: 1   MKRLHRMTLGMLPGPFLGWFGTLMFLLIMQFLIKYLPDLVGKGLPLGVILELISYNLAYM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +        +  +    +I + G S   L  P+L + ++L+  +    N+
Sbjct: 61  VVLAVPMATLIAMIMTFGRLAESNAYQVIKSAGISLPQLTWPLLIVGLVLTGAMMYFNNL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL-QGIFIVDSR 179
           I P+     + L    Q       L+  +F+   +   I +   +P     + + I D R
Sbjct: 121 ILPEANHRARNLWIDIQRKKPGFQLQPGVFYDGIEGYSILVQHRDPETDSLRDVTIYDYR 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAI----ILNDGEVHRKS--PISKDISIMKFKSYTLQT--- 230
           ++  H +  AQ G +           IL DGE HR       +    + F  Y L+    
Sbjct: 181 NSGEHAVLKAQRGLLQPIAGGRFIDLILEDGEFHRLRRLEGQERYERLAFARYRLRLDLS 240

Query: 231 ---ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRS 270
               + +               +L    +            R 
Sbjct: 241 DFVFTRSQEEGYRTDRTTPTPQMLALVDSMAAEVQRNRARIRQ 283



 Score = 50.4 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 6/114 (5%)

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
             + L   +     +  +     + YR E HK+ +  +  +IF LI +          +R
Sbjct: 338 QTRRLQTEIEDLQRSIQWTERRADRYRVEIHKKFSIAVACLIFVLIGMPLGL----SVRR 393

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLLMI 354
             +          F  +W       K+    Y  P   ++L    +  + + + 
Sbjct: 394 GGLGLAGGLALAIFLFYWITLVQGEKLADRGYLTPWIGMWLPNLVMGLLGVALF 447


>gi|327396302|dbj|BAK13724.1| inner membrane protein YjgP [Pantoea ananatis AJ13355]
          Length = 308

 Score = 74.3 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 109/304 (35%), Gaps = 19/304 (6%)

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +  ++ P    +     L  +   +E+ ++   G S+  L+K  + L +  S+   ++  
Sbjct: 1   MAQLILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMVLMLFTSVVAAVNVI 60

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P      +Q++  A+     + L    F    D   +   +    N    +F+   R
Sbjct: 61  WLGPWSSRYQEQVTQNAKANPGAAALAAGQFQTSSDGSAVLFLENVKGNQFGHVFLAQLR 120

Query: 180 DTQT--HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                   +  A SG ++  +   Q + L+ G     + + +D  I  F +Y        
Sbjct: 121 PKGNARPSVVLADSGHMEQKKDGSQIVTLDKGTRFEGTALLRDFRITDFTNYQAYVGYKQ 180

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           ++      +    + LL+               +R+E H R+T     ++  L+      
Sbjct: 181 ATLDPNDVDQATFATLLS----------NKTPEFRAELHWRITLVFAVLVMALM---VVP 227

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              +  ++ ++  +  ++ +    F   S +     +     P +++++  IS + L ++
Sbjct: 228 LSVVNPRQGRVLSMLPAMLLYLIFFLLQSSLRSSGAK-GRLDPAIWMWVVNISYLALAIV 286

Query: 355 KKKY 358
              +
Sbjct: 287 LNLW 290


>gi|120611822|ref|YP_971500.1| permease [Acidovorax citrulli AAC00-1]
 gi|120590286|gb|ABM33726.1| permease YjgP/YjgQ family protein [Acidovorax citrulli AAC00-1]
          Length = 365

 Score = 74.3 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 119/334 (35%), Gaps = 17/334 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + +V +   + +++ +   S  + + + ++ + G+ +   LP
Sbjct: 2   LFDSSIRKELARSFGATLVVLVTVVMTMMLIRTLGQASRGSVNPSDVMLVMGFTVLGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L  M R +E++I   +G   + L+ P+L  A  + + +     +I 
Sbjct: 62  TILTLSLFVAVVGTLARMYRESEMVIWFASGRGMLHLLPPLLRFAWPVILAIATLALLIW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     I+QL  + +       +    F    +   +        +  Q   +  + +  
Sbjct: 122 PWANQQIQQLKVQYEQRSDVDRIAPGEFQESANGARVFFIDRETPDNQQATNVFIASNEH 181

Query: 183 THKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +   +          +++  +L+DG+    S     + + +F  Y  +   A SS+  
Sbjct: 182 GRETVTSARSARLETRGNQRMALLSDGQRLETSLDKPGLKVSEFSEYGTRIGGAASSSSD 241

Query: 240 LKA-NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             A   ++ + L                 +R+E   R       + F ++ +  A   + 
Sbjct: 242 DGAVKTRSTAQLF----------ASSDPVFRAELGWRFGLAFAALNFVVLGLAVA---SA 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
             +  +   +  +L      +   ++  + +   
Sbjct: 289 NPRAARSTSLVFALFAFVVYYNLMTFGQNWVGAG 322


>gi|300312408|ref|YP_003776500.1| permease [Herbaspirillum seropedicae SmR1]
 gi|300075193|gb|ADJ64592.1| permease transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score = 74.3 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/341 (10%), Positives = 108/341 (31%), Gaps = 14/341 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R +  +       +  I   + +++ +   +    +   ++ + G+     +P
Sbjct: 2   IFQRALRRELTSTAGGVFTTLFTITLTVMLIKILGQAAGGQVASQDVIALIGFQSLNYMP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    V+T   +++E+++    G S    I PVL     +   +     +  
Sbjct: 62  IILILTGFISVLLVMTRSYQDSEIVVWFACGMSLTRWIAPVLRFGWPIVALVAALSFVAT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYNPNNTLQGIFIVDSRD 180
           P       +  ++ +     + +    F      + ++         + ++ IF+     
Sbjct: 122 PWANQQSSEYRSRFEQREDIARVSPGKFQESAAANRIFFVEGISGDASKVRNIFVNTIGA 181

Query: 181 TQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
              + +  A+ G         + +++N G  +  SP   D  I+ F+ Y L   + + + 
Sbjct: 182 DGKNSVVVAKEGETVIDPDGEKFVVMNQGRRYDGSPGLPDFQIVDFERYGLLIGNQSQNA 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A +++   L            +     R E   R+      +   L++I  +    
Sbjct: 242 ----AGERSARAL-----QMNELVAKNDGYARGELLWRIALPFMALTLMLLAIPLSFVNP 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
              +   +    +   +       F   + +          
Sbjct: 293 RAGRSLGLLVALLLFVVYSNTVSVFQASVAQGRATFMMAWW 333


>gi|320539289|ref|ZP_08038959.1| putative conserved inner membrane protein [Serratia symbiotica str.
           Tucson]
 gi|320030681|gb|EFW12690.1| putative conserved inner membrane protein [Serratia symbiotica str.
           Tucson]
          Length = 396

 Score = 74.3 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 133/356 (37%), Gaps = 19/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +   +++ +  V       N++L +    +P +  
Sbjct: 34  IIIKYLVRETLKSQIAILFILLLIFFCQNLVRVLGDVVDGDVPTNLVLSLLLLGVPKMAQ 93

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G  + TLI   + LAIL S    ++     
Sbjct: 94  LILPLSLFLGLLMTFGRLYTESEITVMHACGLGKRTLIIAAMILAILTSAVAAVNVFWAN 153

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   S    + ++A+   + + L E  F    D   +        +T   +F+   R   
Sbjct: 154 PIASSYQDVVVSEAKANPSIAGLVEGQFKPSQDGNAVVFIGNVKGSTFNNVFLAQLRTNG 213

Query: 183 --THKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G+I+  +   Q + L+ G     + + +D  I  F +Y         + 
Sbjct: 214 TQRPSVVVAEHGNINPQKDGSQVVTLDKGTRFEGTALLRDFRITDFNNYKAVIGHRAVAV 273

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              ++   ++  L   +  +           R+EFH RLT     V   L++++      
Sbjct: 274 DNTQSEQMSMKTLWQSDDPDA----------RAEFHWRLTL---VVSVVLMALLVVPLSV 320

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +  ++ ++  +  ++ +    F   + +     +     PI++L+   ++   + +
Sbjct: 321 VNPRQGRVLSMLPAILLYLIFFLLQTALRSNAGK-GKLDPIIWLWGVNVAYFAIAL 375


>gi|297565137|ref|YP_003684109.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
 gi|296849586|gb|ADH62601.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
          Length = 337

 Score = 74.3 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/349 (11%), Positives = 96/349 (27%), Gaps = 20/349 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+LR     + +  L  V +     +     ++      L+ +L++  Y +P  L +
Sbjct: 2   LQRYLLRETLGLYTVGILIFVGLLTTDLLSSLSGVLLRQNTPLSDVLQLVVYRLPYTLGI 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P          L+   R +EL      G    +L+ P L L +++S     +E  ++P
Sbjct: 62  ALPLGLVFSLLVTLSRWIRQSELKAAYAGGIPPRSLLWPALLLGVVVSGVALWNEGWVKP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           + ++    +                        L   +S         G++         
Sbjct: 122 EAQARFDAV---------------QYRIYYGSQLSGVLSDKVYAPEGLGVYYAQRIYPDR 166

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
                     I+        + G    KS   ++   +       Q              
Sbjct: 167 EGARLEGVRVIEPGGAIWSADRGRWLEKSWQLQNAYRVDPDGKVTQVSLQPLPFPARFVP 226

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             + S  L     + +    +  + R    +     L  ++   ++IV            
Sbjct: 227 QSSSSGALTLRLPDLHAAARVDPSVRFTLARTYANALGALVLAWLAIVVGLSLRES---- 282

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                   + + FG +  ++      + N +     +L       +   
Sbjct: 283 -AWAFISIVGLIFGYYVLWTASAQFAKFNVWGAYGAWLPNLVYGLLAAW 330


>gi|17987546|ref|NP_540180.1| putative permeases [Brucella melitensis bv. 1 str. 16M]
 gi|225852206|ref|YP_002732439.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
 gi|254693440|ref|ZP_05155268.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|256044379|ref|ZP_05447283.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113222|ref|ZP_05454090.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|256264286|ref|ZP_05466818.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260563731|ref|ZP_05834217.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           16M]
 gi|261213693|ref|ZP_05927974.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|265990797|ref|ZP_06103354.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994633|ref|ZP_06107190.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|17983249|gb|AAL52444.1| putative permeases [Brucella melitensis bv. 1 str. 16M]
 gi|225640571|gb|ACO00485.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
 gi|260153747|gb|EEW88839.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260915300|gb|EEX82161.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|262765746|gb|EEZ11535.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001581|gb|EEZ14156.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094546|gb|EEZ18355.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|326408705|gb|ADZ65770.1| permease YjgP/YjgQ family protein [Brucella melitensis M28]
 gi|326538429|gb|ADZ86644.1| permease YjgP/YjgQ family protein [Brucella melitensis M5-90]
          Length = 362

 Score = 74.3 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 102/354 (28%), Gaps = 12/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +  L   L I  +A ++   +  N +++    ++   L +S   +P ++
Sbjct: 5   TLGRYFFTRYVQITLYFLLGIFALALLLDFTENANRLANLPAYTVWAALGLSAMRVPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+NR  EL++  + G S    + P  F A+L  +      N +
Sbjct: 65  QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 124

Query: 122 EPKCRSTIK----QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
                S  +             ++            + +  I         T        
Sbjct: 125 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D Q +      + +  L      L D          ++   ++    + Q        
Sbjct: 185 QFDEQKNIKDRYDARTATLQDGYWELTDVMRF---ARGQEPQKLETFRISTQLRPEYVEE 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +        + L +               +  ++   L      +   LI+   +    
Sbjct: 242 KLASPETIPFTQLRHK-IEVARSFGYSANAFDMQYQSLLALPALLMAMTLIAATVSL--K 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            VR  +    I   +   F ++   S ++       +  P +  ++  + + F 
Sbjct: 299 FVRFGQSGAMILGGVIAGFVLYVV-SVLVKAFGDAGFVPPFVAAWVPVVIATFF 351


>gi|153009929|ref|YP_001371144.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
           49188]
 gi|151561817|gb|ABS15315.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 362

 Score = 74.3 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/354 (11%), Positives = 100/354 (28%), Gaps = 12/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +      L I  ++ ++   +  + +S+    S+   L +S   +P ++
Sbjct: 5   TLGRYFFIRYVQITFYFLLGIFALSLLLDFTENASKLSNLPDYSVWAALGLSAMRVPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+NR  EL++  + G S    + P  F A L  +      N  
Sbjct: 65  QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGAFLFGLATIFILNPF 124

Query: 122 EPKCRSTIKQ----LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
                +   +            ++            + +  I                  
Sbjct: 125 AAYGFAKADEIASTWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILDQGATLADATFI 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D + +      + +  L      L D    R +   +   +  F+    Q        
Sbjct: 185 QFDEKKNIKVRYDARTAQLKDGHWELTDVT--RFARGEEPQKMASFQ-IETQLRPEYVEE 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +   +    + L +               +  ++   L      +   LI+   +    
Sbjct: 242 KLATPDTIPFTQLRHK-IEVARSFGYSANAFDMQYQSLLALPALLMAMTLIAATVSL--K 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            VR  +    I   +   F ++   S ++       +  P +  ++  + + F 
Sbjct: 299 FVRFGQSGAMILGGVIAGFMLYVV-SVLVKAFGNAGFVPPFVAAWVPVVIATFF 351


>gi|62289648|ref|YP_221441.1| hypothetical protein BruAb1_0705 [Brucella abortus bv. 1 str.
           9-941]
 gi|82699576|ref|YP_414150.1| YjgP/YjgQ permease [Brucella melitensis biovar Abortus 2308]
 gi|189023898|ref|YP_001934666.1| permease [Brucella abortus S19]
 gi|254688958|ref|ZP_05152212.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 6
           str. 870]
 gi|254697092|ref|ZP_05158920.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254729988|ref|ZP_05188566.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 4
           str. 292]
 gi|256257206|ref|ZP_05462742.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 9
           str. C68]
 gi|260545600|ref|ZP_05821341.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
 gi|260754447|ref|ZP_05866795.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
 gi|260757666|ref|ZP_05870014.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
 gi|260761493|ref|ZP_05873836.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883476|ref|ZP_05895090.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
 gi|297248056|ref|ZP_06931774.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
 gi|62195780|gb|AAX74080.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615677|emb|CAJ10664.1| Predicted permease YjgP/YjgQ family [Brucella melitensis biovar
           Abortus 2308]
 gi|189019470|gb|ACD72192.1| Predicted permease YjgP/YjgQ family [Brucella abortus S19]
 gi|260097007|gb|EEW80882.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
 gi|260667984|gb|EEX54924.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
 gi|260671925|gb|EEX58746.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674555|gb|EEX61376.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
 gi|260873004|gb|EEX80073.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
 gi|297175225|gb|EFH34572.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
          Length = 362

 Score = 74.3 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 102/354 (28%), Gaps = 12/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +  L   L I  +A ++   +  N +++    ++   L +S   +P ++
Sbjct: 5   TLGRYFFTRYVQITLYFLLGIFALALLLDFTENANRLANLPAYTVWAALGLSAMRVPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+NR  EL++  + G S    + P  F A+L  +      N +
Sbjct: 65  QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 124

Query: 122 EPKCRSTIK----QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
                S  +             ++            + +  I         T        
Sbjct: 125 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D Q +      + +  L      L D          ++   ++    + Q        
Sbjct: 185 QFDEQKNIKDRYDARTATLQDGYWELTDVMRF---ARGQEPQKLETFRISTQLRPEYVEE 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +        + L +               +  ++   L      +   LI+   +    
Sbjct: 242 KLASPETIPFTQLCHK-IEVARSFGYSANAFDMQYQSLLALPALLMAMTLIAATVSL--K 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            VR  +    I   +   F ++   S ++       +  P +  ++  + + F 
Sbjct: 299 FVRFGQSGAMILGGVIAGFVLYVV-SVLVKAFGDAGFVPPFVAAWVPVVIATFF 351


>gi|291287414|ref|YP_003504230.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884574|gb|ADD68274.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 361

 Score = 74.3 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 109/361 (30%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  YI++   +  ++  +F+  I  +    Q   ++S    S   L+       P +
Sbjct: 1   MTKFNKYIIKLFVQYTVIVQVFVAIITLIANTFQHTKMLSEYNISFMTLIVYDLMKTPYL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI--SE 118
           L    P    + T  V+ ++ +N EL+   + G     L  P +   I LS+ L+     
Sbjct: 61  LYTTMPMTIVISTMLVMVTLLKNNELIAYVSLGGKIRNLAYPFIVSGIFLSVLLYFSADV 120

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
              +                    S    +++ +  D  +I I+  +P            
Sbjct: 121 INPKIMLERERFAYENIKNRTFNVSGKLTDMWLKESDSSFININLMDPTEKKIIGITEYH 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +      Y     S +      I  + +V    P+       +      +     +S  
Sbjct: 181 LNNNFQVDYIVTYDSAEYYEGKWIEKNKKVFAMDPVPVMTDSAEEVIQERELFDELTSLP 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           VL     +L   +         +      Y  + +K     L  ++  L+          
Sbjct: 241 VLSPKFLSLKE-VRRTAEIMKKQDINTAKYYLQLYKSYAHALSVIVIILVIFPLCI--GF 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC--ISSIFLLMIKK 356
            R    I     SL   F  +W        + +   + P+   F+       + L +I +
Sbjct: 298 NRNHSYIAVASKSLFTGFA-YWMLMASFQSLGKTGLFSPLAANFIPIGAFFILALALIYR 356

Query: 357 K 357
           +
Sbjct: 357 R 357


>gi|307312964|ref|ZP_07592592.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|306907132|gb|EFN37639.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|315063568|gb|ADT77895.1| conserved inner membrane protein [Escherichia coli W]
          Length = 359

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 129/355 (36%), Gaps = 19/355 (5%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +R   +S L     ++ I +  ++++ +          N++L + G  +P +  ++ P  
Sbjct: 1   MRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLS 60

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     P     
Sbjct: 61  LFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRH 120

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKI 186
             ++ A+A+     + L +  F +  +   +   +    +  + +F+   R        +
Sbjct: 121 QDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSV 180

Query: 187 YYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
             A SG    +    Q + LN G     + + +D  I  F+ Y         +      +
Sbjct: 181 VVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTD 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++  L N + +            R+E + R+T      +  L+         +  ++ 
Sbjct: 241 QMDMRTLWNTDTD----------RARAELNWRITLVFTVFMMALM---VVPLSVVNPRQG 287

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
           ++  +  ++ +    F   + +     +     P L+++   +  + L ++   +
Sbjct: 288 RVLSMLPAMLLYLLFFLIQTSLKSNGGK-GKLDPTLWMWTVNLIYLALAIVLNLW 341


>gi|225024725|ref|ZP_03713917.1| hypothetical protein EIKCOROL_01611 [Eikenella corrodens ATCC
           23834]
 gi|224942520|gb|EEG23729.1| hypothetical protein EIKCOROL_01611 [Eikenella corrodens ATCC
           23834]
          Length = 370

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/346 (10%), Positives = 119/346 (34%), Gaps = 20/346 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           ++   ++ + ++ +   + ++     +Q ++ +   +    + + +  +  +    ++P+
Sbjct: 3   YQRKFIKEVSQTAMGVFVLLLATLVAVQAVKLLGGAAGGKVAADAVATLVAFWTVALMPI 62

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           V      +    VL+   R++E+ +  ++G S    I+P++  A+  ++   +   ++ P
Sbjct: 63  VLILTAYISALTVLSRYWRDSEMAVWLSSGLSLYGWIRPLMAFAVPFALLTALVSMLVMP 122

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLD---DDLYIKISKYNPNNTLQGIFIVDSRD 180
              +  ++ +   +     S +   +F         +Y        +     +FI +   
Sbjct: 123 WADARSREFAEVLKRRQDTSMVRPGVFQEFGGSTPRVYFVEKFDAGSGEAANLFIREQNP 182

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT-ESANSST 237
                +  A+ G      +++ + L +G  +  +P   D   + F+   L    +     
Sbjct: 183 QGRDTLITAERGRFAEADNKRTLELFNGRRYSGTPGMADYDEVSFERLHLVVGTAPKLVQ 242

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +       + L                  R E   R+T  +  +I     ++A     
Sbjct: 243 RDIHRRTVPTAKLW----------GNTNPDLRGELMWRITMPVSVLILA---LLALPLSY 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLF 342
           +  +  + + +  ++ +      G + +   I        P L + 
Sbjct: 290 MDNRSGRSYSLLSAIGMFLLYQNGLTLVRDGISSGKIPLWPGLIVP 335


>gi|325103111|ref|YP_004272765.1| permease YjgP/YjgQ family protein [Pedobacter saltans DSM 12145]
 gi|324971959|gb|ADY50943.1| permease YjgP/YjgQ family protein [Pedobacter saltans DSM 12145]
          Length = 476

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 97/291 (33%), Gaps = 19/291 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   L I++   + F ++   ++F+  ++ + + I+ +        ++L++ GY   T 
Sbjct: 1   MKKIHLLIVKAFIKPFFVTFFIVMFVLLMLFLFKYIDDLIGKGFEWYVILQLLGYAAATN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    + +     ++  N EL+ I + G S    + P+  +   LSI  FI  + 
Sbjct: 61  VAMALPLAVLLSSIMTFGNLGENYELVAIKSAGISLQRAMAPLFIMVTGLSIAAFIFSDY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +  L    +       +EE +F        I++ + + +       ++    
Sbjct: 121 MLPVANLKMGSLLYDVRNQKAAFLIEEGVFNNSIPGYSIRVEQKDKDGKTLKDVVIYDHT 180

Query: 181 T--QTHKIYYAQSGSIDLDRQAIILNDGEVH-----------------RKSPISKDISIM 221
                  +  A +G +        L     H                 R      D ++ 
Sbjct: 181 KGSGNTNVLMADTGEMYKTDDEKYLVLVLKHGVRYEESAGQRTYNPRERLVRYKFDETMQ 240

Query: 222 KFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEF 272
           KF   +   +  + +         NL  L +    +  Y   L      + 
Sbjct: 241 KFDLSSFNFKREDENLFKNNYQMLNLKELDSAKLASIKYFDSLANDLFRQI 291



 Score = 47.3 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 52/114 (45%), Gaps = 6/114 (5%)

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
           +++   +           +++  Y  E++++ T  +  ++   I    A   A++R+   
Sbjct: 341 RSVKETIETRSTETQDLFKVITRYIIEYNRKFTLSVSCLVLFFIG---APLGAIIRKGGL 397

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLLMIKK 356
             P+ +S+ I F ++   S I  K+ ++    P+  +++ +F ++ + L +  K
Sbjct: 398 GLPVVVSV-IFFLIYHIISTIGEKMARDGTISPLLGMWIAIFVLTPLGLFLTYK 450


>gi|254713811|ref|ZP_05175622.1| hypothetical protein BcetM6_10740 [Brucella ceti M644/93/1]
 gi|254717131|ref|ZP_05178942.1| hypothetical protein BcetM_12059 [Brucella ceti M13/05/1]
 gi|261218946|ref|ZP_05933227.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
 gi|261321555|ref|ZP_05960752.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
 gi|260924035|gb|EEX90603.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
 gi|261294245|gb|EEX97741.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
          Length = 362

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 102/354 (28%), Gaps = 12/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +  L   L I  +A ++   +  + +++    ++   L +S   +P ++
Sbjct: 5   TLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+NR  EL++  + G S    + P  F A+L  +      N +
Sbjct: 65  QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 124

Query: 122 EPKCRSTIK----QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
                S  +             ++            + +  I         T        
Sbjct: 125 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D Q +      + +  L      L D          ++   ++    + Q        
Sbjct: 185 QFDEQKNIKDRYDARTATLQDGYWELTDVMRF---ARGQEPQKLETFRISTQLRPEYVEE 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +        + L +               +  ++   L      +   LI+   +    
Sbjct: 242 KLASPETIPFTQLRHK-IEVARSFGYSANAFDMQYQSLLALPALLMAMTLIAATVSL--K 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            VR  +    I   +   F ++   S ++       +  P +  ++  + + F 
Sbjct: 299 FVRFGQSGAMILGGVIAGFVLYVV-SVLVKAFGDAGFVPPFVAAWVPVVIATFF 351


>gi|328949933|ref|YP_004367268.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
           14884]
 gi|328450257|gb|AEB11158.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
           14884]
          Length = 346

 Score = 73.9 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/361 (11%), Positives = 115/361 (31%), Gaps = 19/361 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + E Y+LR +G   L     +V +     + +    + +       + +   + +P  
Sbjct: 1   MTTLERYLLREVGAYLLGGLTVVVLLLLGGVLFEVFAPLLARGADPLAVGQYLAHRVPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  +       L+ M  ++EL ++  +G SR  ++  +++ A LL++  F++   
Sbjct: 61  LVRGLPIAYLFALLLALSRMAEDSELKVLLASGISRERVLLALVWFAALLALMGFVAGES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+     +Q+  +A LA   + L+   FF       + + +   +   +   +     
Sbjct: 121 WVPQQLQKARQVLRQAILAKPRALLQPGTFFTDAYGRLVYVGRVKDDGIAEIRVLAPGEV 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  + +      D   +                    +F   T+            
Sbjct: 181 LTAASGAFVEGRLFLEDGMRVTFEGARPRTI---------ARFARGTMPLNELAFEPP-A 230

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              +  L+ L                   + + ++  +    + F L ++  A       
Sbjct: 231 SVANLTLAEL-RARIQEFKRSGLPYHAEATAYWRKWAEPAATISFALFAVGLAFWML--- 286

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMIKK 356
                    + +      ++    +   + +     P++  +    L+ +++  LL + +
Sbjct: 287 -GGSRSLGMVGVVTLTFAYYATWSVFRIMGEQGALPPVIAAWGPNLLYALAAGVLLGVGR 345

Query: 357 K 357
           +
Sbjct: 346 R 346


>gi|255535566|ref|YP_003095937.1| hypothetical protein FIC_01427 [Flavobacteriaceae bacterium
           3519-10]
 gi|255341762|gb|ACU07875.1| membrane protein, putative [Flavobacteriaceae bacterium 3519-10]
          Length = 484

 Score = 73.9 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 89/293 (30%), Gaps = 22/293 (7%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + Y+++     FL     + FI  V  I  ++   +    S   +LK+  YL   V+
Sbjct: 3   KKLDGYVIKSFLGPFLFIFSVLFFIFVVNIIWIQLAQFTGKGLSYWEILKLLAYLSVKVV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +V P    + +           EL  +   G S   ++ P+  ++I LS FLF+  N +
Sbjct: 63  QLVLPLTILLSSIMTFGDFGERYELAAMKAAGISLTRIMMPLFVVSIALSFFLFLFSNNV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +   K +                 F +      +K  +    N      +   +  
Sbjct: 123 IPDFQRKAKNMLYNIAATKPALNFSPGQFIQQIPGYSVKFDEITGENGENLTGVFIHKMA 182

Query: 182 Q---THKIYYAQSGSIDLDRQAI----ILNDGEVHRKSPISKDISIM------------- 221
                 +   A+ G             +L +G +  ++  + D +               
Sbjct: 183 NSYENQQSIVAEKGKFVQADNRNYLKLVLYNGHIFEENIGNVDYNQRIKQPDQAIKFDTL 242

Query: 222 --KFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEF 272
              F    +  ++  +  I    + QN   L             +L     E 
Sbjct: 243 VSHFNISEIINKALEAEQITDDYSFQNFIELNTTIEKAKKENDNILRNLSDEL 295



 Score = 37.3 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 23/105 (21%)

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
           L  L                       +     +  +IF LI                + 
Sbjct: 343 LKELNEGKKPQIKDLHSYNSRIIMYQQRIFAYSMTCLIFFLIGSSLGSIIRKGGLGLPVV 402

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              +   I + +      +    E NPY    L   +      +L
Sbjct: 403 IAIMVFIIFYILNLTVENMAWAGEMNPYLASWLPNMVLFPFGAWL 447


>gi|23501573|ref|NP_697700.1| hypothetical protein BR0686 [Brucella suis 1330]
 gi|161618655|ref|YP_001592542.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
 gi|163842956|ref|YP_001627360.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
 gi|254701469|ref|ZP_05163297.1| hypothetical protein Bsuib55_11506 [Brucella suis bv. 5 str. 513]
 gi|254704016|ref|ZP_05165844.1| hypothetical protein Bsuib36_08824 [Brucella suis bv. 3 str. 686]
 gi|254707610|ref|ZP_05169438.1| hypothetical protein BpinM_11731 [Brucella pinnipedialis
           M163/99/10]
 gi|254709807|ref|ZP_05171618.1| hypothetical protein BpinB_05956 [Brucella pinnipedialis B2/94]
 gi|256031298|ref|ZP_05444912.1| hypothetical protein BpinM2_11713 [Brucella pinnipedialis
           M292/94/1]
 gi|256060811|ref|ZP_05450971.1| hypothetical protein Bneo5_10662 [Brucella neotomae 5K33]
 gi|256159412|ref|ZP_05457190.1| hypothetical protein BcetM4_10688 [Brucella ceti M490/95/1]
 gi|256254706|ref|ZP_05460242.1| hypothetical protein BcetB_10505 [Brucella ceti B1/94]
 gi|256369121|ref|YP_003106629.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
 gi|260168437|ref|ZP_05755248.1| hypothetical protein BruF5_08723 [Brucella sp. F5/99]
 gi|260566735|ref|ZP_05837205.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
 gi|261221886|ref|ZP_05936167.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
 gi|261315100|ref|ZP_05954297.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M163/99/10]
 gi|261317345|ref|ZP_05956542.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
 gi|261324803|ref|ZP_05964000.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
 gi|261752012|ref|ZP_05995721.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
 gi|261754671|ref|ZP_05998380.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
 gi|261757899|ref|ZP_06001608.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
 gi|265988383|ref|ZP_06100940.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M292/94/1]
 gi|265997849|ref|ZP_06110406.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
 gi|294852048|ref|ZP_06792721.1| hypothetical protein BAZG_00964 [Brucella sp. NVSL 07-0026]
 gi|306845287|ref|ZP_07477863.1| hypothetical protein BIBO1_1972 [Brucella sp. BO1]
 gi|23347486|gb|AAN29615.1| conserved hypothetical protein [Brucella suis 1330]
 gi|161335466|gb|ABX61771.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
 gi|163673679|gb|ABY37790.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
 gi|255999281|gb|ACU47680.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
 gi|260156253|gb|EEW91333.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
 gi|260920470|gb|EEX87123.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
 gi|261296568|gb|EEY00065.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
 gi|261300783|gb|EEY04280.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
 gi|261304126|gb|EEY07623.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M163/99/10]
 gi|261737883|gb|EEY25879.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
 gi|261741765|gb|EEY29691.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
 gi|261744424|gb|EEY32350.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
 gi|262552317|gb|EEZ08307.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
 gi|264660580|gb|EEZ30841.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M292/94/1]
 gi|294820637|gb|EFG37636.1| hypothetical protein BAZG_00964 [Brucella sp. NVSL 07-0026]
 gi|306274446|gb|EFM56253.1| hypothetical protein BIBO1_1972 [Brucella sp. BO1]
          Length = 362

 Score = 73.9 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 102/354 (28%), Gaps = 12/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +  L   L I  +A ++   +  + +++    ++   L +S   +P ++
Sbjct: 5   TLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+NR  EL++  + G S    + P  F A+L  +      N +
Sbjct: 65  QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 124

Query: 122 EPKCRSTIK----QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
                S  +             ++            + +  I         T        
Sbjct: 125 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D Q +      + +  L      L D          ++   ++    + Q        
Sbjct: 185 QFDEQKNIKDRYDARTATLQDGYWELTDVMRF---ARGQEPQKLETFRISTQLRPEYVEE 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +        + L +               +  ++   L      +   LI+   +    
Sbjct: 242 KLASPETIPFTQLRHK-IEVARSFGYSANAFDMQYQSLLALPALLMAMTLIAATVSL--K 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            VR  +    I   +   F ++   S ++       +  P +  ++  + + F 
Sbjct: 299 FVRFGQSGAMILGGVIAGFVLYVV-SVLVKAFGDAGFVPPFVAAWVPVVIATFF 351


>gi|254669827|emb|CBA04201.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
          Length = 210

 Score = 73.9 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 65/201 (32%), Gaps = 2/201 (0%)

Query: 160 KISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS 219
              K  P++TL GI I    D            ++     +  L +           ++S
Sbjct: 12  WALKSGPDHTLLGIKIWARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVS 71

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
           I   +++ +  +      +++K +  ++  L      +     +    Y   + ++L   
Sbjct: 72  IAAEENWPISVKRNLMDVLLVKPDQMSVGELT-TYIRHLQNNSQNTRIYAIAWWRKLVYP 130

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
               +  L++     +              I L + F +   F     ++   P ++   
Sbjct: 131 AAAWVMALVAFAFTPQTTRHGNMGLKLFGGICLGLLFHLAGRFFGFTSQLYGIPPFLAG- 189

Query: 340 YLFLFCISSIFLLMIKKKYTK 360
            L     + + + +I+K+  +
Sbjct: 190 ALPTIAFALLAVWLIRKQEKR 210


>gi|258405420|ref|YP_003198162.1| permease YjgP/YjgQ family protein [Desulfohalobium retbaense DSM
           5692]
 gi|257797647|gb|ACV68584.1| permease YjgP/YjgQ family protein [Desulfohalobium retbaense DSM
           5692]
          Length = 395

 Score = 73.9 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 118/360 (32%), Gaps = 14/360 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +     I + +   F +     + +  V ++L+   L  S   +L  L ++  YL P  L
Sbjct: 4   RRLSREIFKELVYVFSLCLGSFLALLLVGRLLKLRELFLSQDVALLDLGQLFLYLSPFFL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P    +        M+ + EL+ +   G S   L+   L   +L +          
Sbjct: 64  LLLLPIASMLSVFLTFLRMSTDRELVALRAAGLSLWQLLPVTLLFLLLCTAANIGIGIYG 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSRD 180
                   +          T   L+  +F +    L I   + +     L  +F+ D+  
Sbjct: 124 VSWGMDNFRATILDMAKTRTQLVLQPGVFNQDFPGLTIFARQVDRETGDLSTVFVEDTSR 183

Query: 181 TQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--AN 234
            Q      A  GS+  D    +    L +G ++R    S  +         L  +   + 
Sbjct: 184 GQGAIGIVAPQGSLTTDTRKGQVVFSLRNGRLYRHDRDSASVLGFGEYRIALDLDKIISG 243

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELL---ETYRSEFHKRLTQWLFPVIFGLISIV 291
                 +  + + + L++        +            E HKRL   L  +  G+ ++ 
Sbjct: 244 VELEEKRPKEMSWTRLMDYRHQADLAQTRDATFDRKVDVETHKRLALPLACLALGIFAMP 303

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            A     +++        +SL + F V++        + +     P + L+   I  + L
Sbjct: 304 LAALFEGLKRH---FGFLVSLGL-FLVYYALFSAGLSLGETGTLAPAIGLWAPNILFMGL 359


>gi|322834556|ref|YP_004214583.1| permease YjgP/YjgQ family protein [Rahnella sp. Y9602]
 gi|321169757|gb|ADW75456.1| permease YjgP/YjgQ family protein [Rahnella sp. Y9602]
          Length = 364

 Score = 73.9 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 131/364 (35%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETFKSQFAILFILLLIFFCQKLVRVLGAAVDGDIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +  ++E+ ++   G  + +L+   L LA+  S+F  ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTDSEITVMHACGLGKRSLVIAALVLALFTSVFAGVNAIWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+   + + + E  F +  +   +             +F+   R   
Sbjct: 122 PWSSKHQDEVLAEAKANPSMAAMVEGQFQQAQNGNAVLFVGSVKGKEFHNVFLAQLRPNG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G +       Q ++L+ G  +  + + +D  +  F  Y           
Sbjct: 182 NQRPSVVVADKGHMLQRADGSQQVMLDKGTRYEGTALLRDFRVTDFTDYLAVIGHQAVQL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +++   ++ L N                R+E + RLT  +   I  L+         
Sbjct: 242 DPNQSDQMTMTQLWN----------SNEPEARAELNWRLTLIVSVFIMALL---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   + +     +     P+L+++   +    L ++   
Sbjct: 289 VNPRQGRVLSMLPAILLYLIFFLLQTSLRSNGAK-GKLDPMLWMWGTNLLYFALALVLNA 347

Query: 358 YTKI 361
           +  +
Sbjct: 348 WDTL 351


>gi|239831520|ref|ZP_04679849.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
           3301]
 gi|239823787|gb|EEQ95355.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
           3301]
          Length = 362

 Score = 73.5 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 99/354 (27%), Gaps = 12/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +      L I  ++ ++   +  + +S+    S+   L +S   +P ++
Sbjct: 5   TLGRYFFIRYVQITFYFLLGIFALSLLLDFTENASKLSNLPDYSVWAALGLSAMRVPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+NR  EL++  + G S    + P  F A L  +      N  
Sbjct: 65  QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGAFLFGLATIFILNPF 124

Query: 122 EPKCRSTIKQ----LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
                +   +            ++            + +  I                  
Sbjct: 125 AAYGFAKADEIASTWKTGKTTDVSALRDPWLRQKTDEGETIIGAKSILDQGATLADATFI 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D + +      +    L      L D    R +   +   +  F+    Q        
Sbjct: 185 QFDEKKNIRERFDARRAQLRDGHWELTDVT--RFARGEEPQKMASFQ-IETQLRPEYVEE 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +   +    + L +               +  ++   L      +   LI+   +    
Sbjct: 242 KLATPDTIPFTQLRHK-IEVARSFGYSANAFDMQYQSLLALPALLMAMTLIAATVSL--K 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            VR  +    I   +   F ++   S ++       +  P +  ++  I + F 
Sbjct: 299 FVRFGQSGAMILGGVIAGFMLYVV-SVLVKAFGNAGFVPPFVAAWVPVIIATFF 351


>gi|304392006|ref|ZP_07373948.1| permease [Ahrensia sp. R2A130]
 gi|303296235|gb|EFL90593.1| permease [Ahrensia sp. R2A130]
          Length = 372

 Score = 73.5 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/361 (10%), Positives = 109/361 (30%), Gaps = 16/361 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +  +Y+ +   R+ +   L   F+  ++ +L+     +         ++ I     P + 
Sbjct: 5   TLSVYLAKNFLRNTMFVFLVFFFLIALVDMLELSRRTARIDDVGFFDVVSIVMLRAPVLS 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF      +  L  +N+  EL++   +G S    + P+   A ++ + + +  N +
Sbjct: 65  ENIVPFAVLFGASASLLLLNKRLELVVARASGVSVWQFLAPICAAAAVVGLVMGLIYNPL 124

Query: 122 EPKCRST-------IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
             + +++       +   +       T+++         D  L   ++            
Sbjct: 125 SLRLQASSLSLEGVVFAKNTGVTSDTTWNFWTRIARPDGDMVLRAAVAAERGKKLSGVSL 184

Query: 175 IVDSRDTQTHKIYYAQSGSIDL----DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
            +  +D +  +   A S +                 E      + +   ++      +  
Sbjct: 185 YLFDKDGKPEQRIDAASANFAEAVPGTDSLPNRYVLERANILTVGEKPKVVPVMVVPVSI 244

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            +         A   +   L +             E +++ +H  L   L  V   L++ 
Sbjct: 245 TAELLEIRQTSAERVSFWDL-DDQAELAERAGRPPEPFQTRWHSVLALPLLFVAMVLLAG 303

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             +      R       I   +   F ++   + ++     N    P++  +        
Sbjct: 304 TVSLT--FARFGINGKRILTGVVAGFVLY-VLTKLVVTFGSNGLVSPVIAAWSPATVGSL 360

Query: 351 L 351
           +
Sbjct: 361 I 361


>gi|282892298|ref|ZP_06300694.1| hypothetical protein pah_c221o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497889|gb|EFB40240.1| hypothetical protein pah_c221o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 361

 Score = 73.5 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 111/341 (32%), Gaps = 5/341 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             +E Y  R + + F +       +  +I         S+     + +     Y +   L
Sbjct: 9   SIWERYFFREVVKLFCVFIGSFYGLYVLIDFSSHTTQFSTH-FQWSEIFSYYFYELIRRL 67

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ PF   + T   L S++ N EL+ +  +G S  +L++P + + +  ++ ++ +   +
Sbjct: 68  DVILPFALMLATIKTLCSLSTNNELVALMASGMSLKSLLRPFIIIGLFFTVLMYGNAEFL 127

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK +  +KQ+  +             +   + DD    + +Y              +  
Sbjct: 128 LPKAQKGLKQIHDRHTSLKNKLENRGFVQHIILDDQTQILFQYYDEERQFFFDSYWIKSA 187

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                       +++     + +         + +  S ++ +   +          +  
Sbjct: 188 DDIFRIKYLFPHLEVPLGRYVHHLTRNQN-DELVESASFVEKEFPQIYFNQKKLQETLSL 246

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             +Q+L+ L+   P+N     E      S F+ ++      +   +       + +   +
Sbjct: 247 PEEQSLTDLVQQLPHNNRISHEKEAQVVSHFYHKMALPWLCLFAVIAPAPFCVRFS---R 303

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
              +  I+         F+        + +     PI  ++
Sbjct: 304 GLPVFMIYACSIFGLITFYLTMDAALILAKRQVLDPIWAIW 344


>gi|121605070|ref|YP_982399.1| permease [Polaromonas naphthalenivorans CJ2]
 gi|120594039|gb|ABM37478.1| permease YjgP/YjgQ family protein [Polaromonas naphthalenivorans
           CJ2]
          Length = 373

 Score = 73.5 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/315 (14%), Positives = 111/315 (35%), Gaps = 20/315 (6%)

Query: 8   ILRCIGRSF---LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           I + + R+F   L+    ++ I   I +++ +   S  + S   ++    Y     LP +
Sbjct: 7   IRKELARAFGATLV---VLITIVMTIVLIRTLGQASRGSISPQDVMLYMAYSGLGRLPTI 63

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
                 +   + LT M R++E+++   +G      ++P+   A  + + + +    + P 
Sbjct: 64  LTISLFIAMVSTLTRMYRDSEMVVWFTSGQGLAGFLRPLFHFAWPVLLVITLMALFVWPW 123

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                K + ++ Q       +   +F      +    I +            + + +   
Sbjct: 124 TNQQTKDMQSRYQQRGDLDRITPGVFQESSSGNRVFFIDRDLAGEKASTNVFIAATEKGK 183

Query: 184 HKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN-SSTIVL 240
             I  AQSG I+   D + ++L++G+          + I  FK Y ++T  +        
Sbjct: 184 SSITTAQSGRIESRGDARFLMLSNGQRLENDLEKSALKISDFKEYGVKTNDSGLLGESAP 243

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +A   +   L+           +   +   E   RL   L    F  +++  A       
Sbjct: 244 EAKLLSTRALI----------KDPTRSNLGELAWRLGLALSAFNFVFLAVALAKVNPRGG 293

Query: 301 QRKKIHPIFISLSIS 315
           +   +  + ++  + 
Sbjct: 294 RSGNMMFVVLAFVVY 308


>gi|313205632|ref|YP_004044809.1| permease yjgp/yjgq family protein [Riemerella anatipestifer DSM
           15868]
 gi|312444948|gb|ADQ81303.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer DSM
           15868]
 gi|315022637|gb|EFT35662.1| hypothetical protein RAYM_03529 [Riemerella anatipestifer RA-YM]
 gi|325334940|gb|ADZ11214.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer RA-GD]
          Length = 484

 Score = 73.1 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 85/267 (31%), Gaps = 6/267 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YI++     FL     + FI  V  I  ++   +    S   + K+  Y+  +V
Sbjct: 2   LKKLDRYIIKTFFGPFLFIFSVLFFIFLVNIIWIKLYQFTGKGLSPFEIGKLLFYMGVSV 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P    + +     +     EL  +   G S   +++P++F+  LLSI LFI  N 
Sbjct: 62  VNMVLPLTVLLSSIMTFGAFGERYELAAMKAAGISLFRIMRPLIFVVTLLSIILFIFSNN 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      K +     +           F        +K  K +  N      I+  ++
Sbjct: 122 VIPDFNRKAKNMLYNIAVTKPALNFTAGQFIGAIPGASVKFDKISGENGENLEGIIIHKE 181

Query: 181 ---TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                  +   A  G     +    L            ++ S    +      +   S  
Sbjct: 182 VNGNNPQQTIIAPKGKFVPAQNRNYLKLILYKGYVYEDENTSYNYNERTK---QPNKSIK 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPEL 264
                   ++S L+N            
Sbjct: 239 FDSLVAHFDVSELVNKAIEEEKITENY 265



 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/347 (8%), Positives = 78/347 (22%), Gaps = 16/347 (4%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           F+++ L I+   +   ++   N  + +      + K +            P       + 
Sbjct: 106 FVVTLLSIILFIFSNNVIPDFNRKAKNMLYNIAVTKPALNFTAGQFIGAIP-----GASV 160

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
               ++      +        +    P   +      F+                    +
Sbjct: 161 KFDKISGENGENLEGIIIHKEVNGNNPQQTIIAPKGKFVPAQNRNYLKLILYKGYVYEDE 220

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKIS-------KYNPNNTLQGIFIVDSRDTQTHKIYY 188
                     ++       D L                    +        D        
Sbjct: 221 NTSYNYNERTKQPNKSIKFDSLVAHFDVSELVNKAIEEEKITENYQFQTYLDINGSIAQL 280

Query: 189 AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS 248
            +      D  +  L        + + K  +    + + + T        +L    Q ++
Sbjct: 281 EKEQKTRFDNISNELVAQNNFYVNYLDKSKNKKATQPFKIDTLKKEKKIEILYNAYQKIN 340

Query: 249 FLLNPNPNN----PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
            L     +N         +          + L+  +  +IF LI                
Sbjct: 341 TLKEDKKSNKDPELYEMLKQRSKMIMYQQRILSFSITCIIFFLIGSSLGSIIRKGGIGFP 400

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +    +   I + +      +  K + NPY    L   +     I+ 
Sbjct: 401 VVIAIVIFIIFYVLNLTVENLSWKGKLNPYLAAWLPNLILAPLGIWF 447


>gi|58040479|ref|YP_192443.1| hypothetical protein GOX2051 [Gluconobacter oxydans 621H]
 gi|58002893|gb|AAW61787.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
          Length = 380

 Score = 73.1 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/330 (10%), Positives = 101/330 (30%), Gaps = 1/330 (0%)

Query: 10  RCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCF 69
           R +   FL+    +V +  ++ +L++   + +       +L  +   +P +   + P  F
Sbjct: 30  RALLGRFLLCGAVLVSLLEILALLEKTTPILNRHLGFRGILTFAFLHLPALSIDILPLAF 89

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTI 129
            +    +LT M  ++E+  +   G S   L + +L   ++  I    ++  + P C + +
Sbjct: 90  MVGALFLLTQMTLSSEISALRAAGLSTPALYRLLLPAVLIAGIGGTCAQYWLVPACENAL 149

Query: 130 KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYA 189
                +           E+          +               +       T  +   
Sbjct: 150 TTWWNRTDPLAGQDGQPEDNILWFRAGPTLVRIGQIAQGGTFLRDVTIYHRDNTGLLTGT 209

Query: 190 QSGSIDLDRQAIILNDG-EVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS 248
           +  ++   R      DG +    S     +++ K  S  +   + +    + +       
Sbjct: 210 EHTNVLTYRDGQWHPDGAQDLSLSDDKSYVNVTKGDSTFVIPATPSVIMTLSQNGATVTP 269

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPI 308
             ++   +          TYR      +   +   +  L+++           R  +   
Sbjct: 270 AQVSAILHKGAPASLPRATYRMALFSGMILPVEIAVMLLLTLPVIYIPPRAGLRNPLPVY 329

Query: 309 FISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
            ++  + F +  G    +      P  + +
Sbjct: 330 VLAAGMGFVILQGMISALGNAGTLPAPLAV 359


>gi|119356768|ref|YP_911412.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
           266]
 gi|119354117|gb|ABL64988.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
           266]
          Length = 442

 Score = 72.7 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 90/234 (38%), Gaps = 6/234 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+L+     F+ + + I+F+  +         +         LL++       +
Sbjct: 1   MKIIDRYLLKSHIGPFIFAFITILFVLILQFFAVFSERLLGKGIGWMTLLELVVVQSAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +       +M   +E+ I   +G S   L+ PVL  A LLS+      N+
Sbjct: 61  VSFTIPMAVLIAVVMAFGAMTNASEITIFRASGISLYRLMAPVLLAATLLSLVAERFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
           + P+     K L A    +     L EN F  L D   I + + +P    ++GI I D  
Sbjct: 121 VLPEANYKAKSLMADIVKSKPVFGLTENAFSTLIDGYSILVRQTDPETGAIRGIVIYDFT 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAII----LNDGEVHRK-SPISKDISIMKFKSYTL 228
                 I  A+SG ++           L +GE+H    P  K+   M FK +  
Sbjct: 181 RPDFRTIVTAESGGVNFSSDYHYLIITLENGEIHEIQQPQHKEYRKMSFKKHRF 234



 Score = 52.7 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 6/108 (5%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           L+   +       +   Y +E+HK+       ++F L+           R+        +
Sbjct: 329 LDQELHRMESDTGMYNKYMAEYHKKYALAFACIVFALVGAPLGVLA---RRGGFGIGAGL 385

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIKK 356
           SL   F ++W       K+ +     P L ++L    I  I L ++ +
Sbjct: 386 SLVF-FVLYWILMISGEKLAERGLLDPGLSMWLGNITIGFIGLFLLYR 432


>gi|121611822|ref|YP_999629.1| permease [Verminephrobacter eiseniae EF01-2]
 gi|121556462|gb|ABM60611.1| permease YjgP/YjgQ family protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 372

 Score = 72.7 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 122/336 (36%), Gaps = 22/336 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + +V +   + +++ +   +  + S + ++ + G+ +   LP
Sbjct: 2   LFDSSIRKELARSFGATLVVLVTVVMTMMLIRTLGQAARGSVSPSDVMLVMGFTVVGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I   +G    +L++P+L  A  + + + +   ++ 
Sbjct: 62  TIASLSLFIAVVGTLSRMYRDSEMVIWFASGRGLASLVRPLLRFAWPVMLVIAVLSLLVW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-------LQGIFI 175
           P   + I+QL  + +       +    F    +   +                   G  I
Sbjct: 122 PWANAQIQQLKTRYEQRSDIDRIAPGEFQESSNGNRVFFIDKGNPAPLAGNDAAQTGSNI 181

Query: 176 VDSRDTQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT-E 231
             +      +   +       +   ++  +L+DG+    S     + I +F  Y +    
Sbjct: 182 FIAASDGRQESVTSARSARLQLQDGQRMAVLSDGQRLETSHDRPGLKISEFSEYVMHIGS 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           +   +   L    +    LL           + L  YR+E   RL   L  + F L+ + 
Sbjct: 242 APPGAAEDLAVKTRATHELLL----------KSLPAYRAELGWRLGLVLAALNFVLLGLA 291

Query: 292 A-ADKRALVRQRKKIHPIFISLSISFGVFWGFSYII 326
             +      R    +  +F  +     +  G S++ 
Sbjct: 292 VTSVNPRAARSTSMLFALFAFIVYYNLMTLGQSWVG 327


>gi|237747610|ref|ZP_04578090.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229378972|gb|EEO29063.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 357

 Score = 72.7 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 120/337 (35%), Gaps = 18/337 (5%)

Query: 23  IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNR 82
           +  I   + +++ +   +    + + +L + G+     LP++      +    V+T   +
Sbjct: 3   LFTITITMMLIRILGQAAKGRVASDDVLALLGFTSLNYLPIILILTGFVSVLLVVTRSYQ 62

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
           ++E+++   +G S    ++PV+  AI + + + +      P       +   + +     
Sbjct: 63  DSEMVVWFASGLSLTRWLRPVIEFAIPIVVLVSLLGFFATPWAYRQSAEFRERFEKREDI 122

Query: 143 SYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ-- 199
           + +    F           + K + +        ++S          ++ G+++ + +  
Sbjct: 123 ARISPGKFQESAAAQRVFFVEKMSDDLNKVKNVFINSTRNGNITTVVSKEGTVETNEKGE 182

Query: 200 -AIILNDGEVHRKSPISKDISIMKFKSYTLQT-ESANSSTIVLKANDQNLSFLLNPNPNN 257
             I+L+DG  + ++P      IM F  YT      A+ S   + A       L+    ++
Sbjct: 183 KFIVLDDGIRYEETPDQSGFRIMDFDKYTAYIASKADMSGTNVSARSMTTMELMTDINSH 242

Query: 258 PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG 317
                        E   R+      ++     ++      +  +  +   + I++ +   
Sbjct: 243 KQG----------ELLWRIGLPFMAILLI---LLGIPLGFVNPRAGRSFNLIIAVLLYMT 289

Query: 318 VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                S++   + Q      + +  L  I ++ ++++
Sbjct: 290 YSNLLSFMQAYVVQKKIMFGLAWWPLHLIVALVIVLL 326


>gi|291296718|ref|YP_003508116.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
 gi|290471677|gb|ADD29096.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
          Length = 346

 Score = 72.7 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/342 (11%), Positives = 113/342 (33%), Gaps = 15/342 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+++ +G S L +   +V       + + +  + +      ++ +   + +P  
Sbjct: 1   MSVLDRYLIKEVGASVLGALAVVVLALLGGALYEVLAPLLARGADPWVVSQYLAFRVPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F      VL+ M   +EL  +   G S++ ++ P+L L  LL +    + + 
Sbjct: 61  LVRGAPLAFLFALLLVLSRMGEESELKAMLAGGVSKLRVLFPLLLLGTLLFVICLAAADS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+     + +  +A L    + L+            + + + +     Q   I     
Sbjct: 121 LVPRSLQQGQNVLRQAVLQKPRALLQPGTRLVDAYGRIVYVGEVSDAGIGQVRVITAEEI 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +  +        ++  ++L+ G        ++  ++ +F+  T+     +      
Sbjct: 181 LVAEQGRF--------EQGTLVLSQGMRVTY-GGARPRTVARFERATVPLVELSLEPPGG 231

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                 ++ L          +        +  H++  +      F + ++  A       
Sbjct: 232 -LFSLTVAEL-RQRIAQYRAQGLPYHAELTALHRKWAEPAAVYSFAIFAVGLAFFLL--- 286

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
                    + + +   +++    +   + +     PIL  +
Sbjct: 287 -GGSRSLGMLGVVVLTFIYYATWSVGRIMGEQGVLHPILAAW 327


>gi|254718822|ref|ZP_05180633.1| hypothetical protein Bru83_04670 [Brucella sp. 83/13]
 gi|265983807|ref|ZP_06096542.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
 gi|306838744|ref|ZP_07471578.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
 gi|264662399|gb|EEZ32660.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
 gi|306406146|gb|EFM62391.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
          Length = 362

 Score = 72.7 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 102/354 (28%), Gaps = 12/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +  L   L I  +A ++   +  + +++    ++   L +S   +P ++
Sbjct: 5   TLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+NR  EL++  + G S    + P  F A+L  +      N +
Sbjct: 65  QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 124

Query: 122 EPKCRSTIK----QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
                S  +             ++            + +  I         T        
Sbjct: 125 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D Q +      + +  L      L D          ++   ++    + Q        
Sbjct: 185 QFDKQKNIKDRYDARTATLQDGYWELTDVMRF---ARGQEPQKLETFRISTQLRPEYVEE 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +        + L +               +  ++   L      +   LI+   +    
Sbjct: 242 KLASPETIPFTQLRHK-IEVARSFGYSANAFDMQYQSLLALPALLMAMTLIAATVSL--K 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            VR  +    I   +   F ++   S ++       +  P +  ++  + + F 
Sbjct: 299 FVRFGQSGAMILGGVIAGFVLYVV-SVLVKAFSDAGFVPPFVAAWVPVVIATFF 351


>gi|301048205|ref|ZP_07195241.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|300299963|gb|EFJ56348.1| conserved hypothetical protein [Escherichia coli MS 185-1]
          Length = 356

 Score = 72.7 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 132/347 (38%), Gaps = 18/347 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++F        + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFFFARYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +I+ A+S  +     ++  ++L++G  +      +D +   +++  L     + S 
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLNPLDQSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V +          +  P +            +E   R ++ L  ++     ++A     
Sbjct: 241 NVKRKAKSVTELARSVFPAD-----------HAELQWRQSRGLTALLMA---LLAISLSR 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFL 343
           +  ++ +   +     +   +F+G       +       IP L+L  
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVP 333


>gi|153951328|ref|YP_001398257.1| hypothetical protein JJD26997_1188 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152938774|gb|ABS43515.1| putative membrane protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 341

 Score = 72.3 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 116/324 (35%), Gaps = 14/324 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L     + L     +  I  ++  +Q   L SS   S   LLK+ G+++P +
Sbjct: 1   MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEISFLDLLKLYGFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  +++  E +++   G S + L K  L +A L+S F+ +   +
Sbjct: 61  LIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P                + F+Y       +  D +     + +  +    ++    + 
Sbjct: 121 MTPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSDKHENIIMYRPKHKA 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS-PISKDISIMKFKSYTLQTESANSSTIV 239
               ++  A+   +     +   +  +    +    + I   +F +  + T+    +   
Sbjct: 181 GDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQSIFSGEFDTLVVNTQFNTDNLQT 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            K  +           N+ N  P+    +       +T  LFP+   L ++         
Sbjct: 241 KKFYE---------YWNDLNENPQRAREFVI----YITIALFPLASTLFALCFGLVTYRY 287

Query: 300 RQRKKIHPIFISLSISFGVFWGFS 323
            +      +F  ++I FG+   FS
Sbjct: 288 EKGYVYLGMFGVIAIYFGLLSSFS 311


>gi|226357375|ref|YP_002787115.1| membrane protein; permease [Deinococcus deserti VCD115]
 gi|226319365|gb|ACO47361.1| putative membrane protein; putative permease [Deinococcus deserti
           VCD115]
          Length = 347

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 101/356 (28%), Gaps = 12/356 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                ++LR + R +       + +     +   +  + +    L   +   G ++PT+L
Sbjct: 3   SILTRFVLREVLRWYAAGAALFLTLQMTDVLSTTVAKLLTYDPPLWKAVAAFGAILPTIL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
                           + M R++E   I   G   ++L+ P+L    ++ +    +   +
Sbjct: 63  NRTLVLAVPFAILLAFSRMQRDSEFKAILAAGVRPLSLVWPLLAPFAVVGLIAGYNAGTL 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P       +   +          +E+  F     LY      N     +          
Sbjct: 123 VPAGLKQWDRAWYRIYEQTPPPPTQEHYTFAPAGALYYASRIVNAKGGDRAELTGVMVQR 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                  A SG  D   +   L +  V R     +  +           +   +      
Sbjct: 183 GEET-LTATSGVWDAKARTWTLQNAWVVRPGQPPRQKTGALVLPQRDTLQPPPAEG---- 237

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               + + L        +        Y+ +   R+   + PV+F    + A     L+R 
Sbjct: 238 -KQLSNAQLRAGLKRELSPAQR--RDYQYQLATRVADPVTPVVFA---LAAGALGLLIRS 291

Query: 302 RKKIHPIFISLSISFGVFWGFS-YIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R       +    SF + W  +  +      +P     L    F + +  L    +
Sbjct: 292 RATAFAAVLVFIASFYILWSTAPQLARAGAMDPALAAWLPNLTFLLLAGVLAWRLR 347


>gi|297537470|ref|YP_003673239.1| permease [Methylotenera sp. 301]
 gi|297256817|gb|ADI28662.1| permease YjgP/YjgQ family protein [Methylotenera sp. 301]
          Length = 372

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/360 (11%), Positives = 116/360 (32%), Gaps = 19/360 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F   +L  +  +   + L ++ I    +    + L +      + +  I G+ I   +P
Sbjct: 2   LFRRSLLHELIATASGTFLILIGIVIAQRAGYLVQLAAKGVLPNDAITTILGFNIIRFMP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +     L+   R++E++I  + G S  + I+P+L  A  + + +      + 
Sbjct: 62  LLLSLSLFLAILLTLSRWYRDSEMVIWFSAGLSITSWIRPILVFATPIVVIIAFLSLFVT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   + ++    + +     + +   +F        +   +           I       
Sbjct: 122 PWATNKVEDFRVQLESRDDLAAISPGVFKESAHADRVFFIESFDELGNIVKNIFVQSIQH 181

Query: 183 THKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                   +             +++  G  +  +  + + S  +F+ Y ++ E++ +   
Sbjct: 182 QKLGIIVAAQGSRLVEKNGDNFLLMEHGHRYEGARGTSEYSTTEFEKYAIRVEASEAKRE 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                  +   L+                  +E   RL   +  +I     ++A    AL
Sbjct: 242 PPSTQSISSRDLIM----------NKSNNNIAELQWRLAMPVSALILA---LLAIPLSAL 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLMIKK 356
             +  +     +++ I        + I   I Q      I +  + L   + +F +  ++
Sbjct: 289 DPRAGRSANFALAIVIYIIYNNLLNIIQAWIAQGKVSGIIGLWPIHLVFGTLVFYMFYRR 348


>gi|212212731|ref|YP_002303667.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuG_Q212]
 gi|212011141|gb|ACJ18522.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuG_Q212]
          Length = 372

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 119/342 (34%), Gaps = 21/342 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I  + L + L ++ I    Q +  +N  ++   ++  +++I    +P +L 
Sbjct: 4   IVFRYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAAAGKITVKAVMEIMSLQVPLLLG 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +     L  M  + E++I+   G SR  ++  ++ LA  + + +      +E
Sbjct: 64  YLLPLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSVE 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV------ 176
           PK +    ++   A    +   +    F  L  +  +  +    ++  + + +       
Sbjct: 124 PKMQWYRVKILKDAVATASLEKIVPGRFQPLSSNGQVFYAGGVNDHHQKMLNVFLAQSET 183

Query: 177 --DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               +         A   S       I+  +G  +   P      +MKF  Y ++  S  
Sbjct: 184 AGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLTSP- 242

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +  I  + +    S L + +  +            +E   R+   L   +F L+      
Sbjct: 243 AMDITGRVDAMPTSKLWHLHSKDLKAA--------AELQWRIAMPLSVWLFALL---IVP 291

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                 ++ K   +  ++ I  G +  F ++     ++    
Sbjct: 292 LSEANPRKGKFAQMLPAVLIYIG-YANFMFLGRTWIEDGVIS 332


>gi|23013662|ref|ZP_00053531.1| COG0795: Predicted permeases [Magnetospirillum magnetotacticum
           MS-1]
          Length = 312

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 87/304 (28%), Gaps = 8/304 (2%)

Query: 54  GYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113
              +P +L  + PF   +        + R  EL++    G S    I PVL +A +  IF
Sbjct: 3   FLKLPQMLHTILPFAVMIGAMVCFWRLTRTHELVVARAAGISAWQFITPVLAVAGMFGIF 62

Query: 114 LFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
              + N +     S  ++L  +   A + ++    +   L +         +     Q  
Sbjct: 63  EITTFNPMAAAMYSRYERLQDELLAAKSSAFDISEVGLWLREPHDDGEMVVHSETVRQEG 122

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVH----RKSPISKDISIMKFKSYTLQ 229
            ++  RD               +  +   L DG             K     +      Q
Sbjct: 123 LVLHIRDAHFFLYDRPDHFYQRIAAETASLEDGAFEVRRAWVMEGGKPSVFKEKMRIPTQ 182

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                           +   L                 +R      L   +      L++
Sbjct: 183 LTLDRIHDNFASPETLSFWQL-PGFIRFFERAGFTANKHRLYLQSLLASPVLYCGMVLMA 241

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISS 348
            V + +    R    +  I   ++  F V++ FS +I+ +  +      L  +     + 
Sbjct: 242 AVFSLRPNT-RSGGLLARIGGGVAAGFAVYF-FSKVIYALGLSATLPQTLAAWTPPLFAG 299

Query: 349 IFLL 352
           +  L
Sbjct: 300 LIGL 303


>gi|93004885|ref|YP_579322.1| permease YjgP/YjgQ [Psychrobacter cryohalolentis K5]
 gi|92392563|gb|ABE73838.1| permease YjgP/YjgQ [Psychrobacter cryohalolentis K5]
          Length = 408

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/385 (9%), Positives = 114/385 (29%), Gaps = 30/385 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K    Y+      + + + + +  +  V   L  ++ +   + ++   ++   Y  P  
Sbjct: 27  LKVLSRYVKLNALLAIIAAVIGLWALQLVFSYLSELDSL-DGSYTMGEAIRYIFYRSPYF 85

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     L  +  N+EL+++   G S   ++  VL  A++  +        
Sbjct: 86  LEQFIPTGALLGAVVGLGLLANNSELVVMRAAGISVYRIVSWVLQPAMIFVVLALFINQF 145

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF------ 174
           + P       +++++   +L  S           ++     +K + ++ L   +      
Sbjct: 146 VLPYSNQLANEINSEDNSSLVTSVRGYWTVQPRFENTKDGSAKPDGSDILYIDYADVKGN 205

Query: 175 ------IVDSRDTQTHKIYYAQSGSIDLDR--------------QAIILNDGEVHRKSPI 214
                      +       +A+ G                        LN+      +  
Sbjct: 206 IGQVKRWHLDNNGNLQTAIHAEGGKYIGREALVTASSKPSEQYRYEWQLNNMTKLMINQG 265

Query: 215 SKDISIMK-FKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFH 273
            +    +    + +L     +   +  +A D +L+ L              L  +   F 
Sbjct: 266 FESSQAISPTDTLSLPFAPESVYLLTRQAEDLSLTQLYEHRQFMRQQGTRSLS-HELAFW 324

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
           ++L   L  +   +++                  + +   + F         +       
Sbjct: 325 QKLLSPLSILSLVIVACSFVFGSLRTHSLGLRIVVALLFGLLFSYVQDLVGFVSLATGFS 384

Query: 334 YYIPILYLFLFCISSIFLLMIKKKY 358
             + ++ L +   + +   ++K++ 
Sbjct: 385 PLM-MVILPIIASALLGGYLLKRQM 408


>gi|33597808|ref|NP_885451.1| putative integral membrane protein [Bordetella parapertussis 12822]
 gi|33574237|emb|CAE38569.1| putative integral membrane protein [Bordetella parapertussis]
          Length = 370

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/362 (9%), Positives = 124/362 (34%), Gaps = 8/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I     +    +V +   + +++ +   +  +   +++L ++ +   T 
Sbjct: 1   MSLFKRSVVSEITSHAGVVFSTLVVVWLSVLLVRLLGEAAGGSIGADVVLGLAAFSTITA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP +      +     +T   R +E+++   +G S    ++PV  +A+ +++ +     +
Sbjct: 61  LPTILAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWLRPVARVAVPIAMLVAALTLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P     I +   + +     S +    F        +  ++       +   +     
Sbjct: 121 ASPWAYRQIGEYRERFEQRSDLSKVTAGQFAESGRGDRVFFAEDPVRPGDELGAVFARSI 180

Query: 181 TQTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                     S +    +    + ++L +G  +   P + +I ++ F  Y ++ ES    
Sbjct: 181 DPEWLSVLTASNARSETLPNGDRFLVLGEGHRYDLKPGTPEIRLVNFDQYGVRLESKAGE 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + +A         +   +      +  ++  S+   R+   L  +   L++I      
Sbjct: 241 DPMAEARAAAER--FSKARSTMQLVQDNTDSSWSQIMWRVAMPLAALNLALLAIPLGAVN 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             + +   +    +   +   +       I   + +  +   ++     ++ +   ++ +
Sbjct: 299 PRLGRSGDLLIAGLVGLLYMNMINLSRAWISSGKIS--FSIGVWAVHAVVALLAAYLLMR 356

Query: 357 KY 358
           + 
Sbjct: 357 RL 358


>gi|157164267|ref|YP_001466583.1| ribonuclease PH [Campylobacter concisus 13826]
 gi|112800701|gb|EAT98045.1| permease YjgP/YjgQ [Campylobacter concisus 13826]
          Length = 342

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 118/360 (32%), Gaps = 20/360 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+L     +F      +  I  ++  +Q   + S    S   L K+  +++P V
Sbjct: 1   MSRVNKYLLFNFLGTFASLFSTLFLIMSIVFFIQIARITSYIEISFGELFKLYSFMLPRV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P  F +     L  +++  E ++I   G S   + +  L  + +LS  L +   +
Sbjct: 61  LLFVVPIAFFVSLAMTLFRLSKENESIVIFTLGGSPNKIARFFLAFSAILSAALLVIAIV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN--TLQGIFIVDS 178
           + P             +     +        +  D +    S+    N  T + I + + 
Sbjct: 121 MIPIAAQLNANFIDYKKTVAKLNLKPTQFGQKFSDWMVYVGSESEDKNGTTYKDIVMFNP 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
               + ++  A++  I    Q+I L+  E        +      FKS  ++T  +   + 
Sbjct: 181 FVKDSQRLITAKNAKITNVNQSIELSLNEGKMYDIKDEIYHQSNFKSMKIRTAQSEEISD 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V    +  +                     + +F   +   LFP+   L +I        
Sbjct: 241 VGSIKEYWM-------------EAASSNKRKKDFSTYVLVALFPLASTLFAISLGIVTYR 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +       F  L   F +   FS      +       I ++FL     ++   I ++Y
Sbjct: 288 YEKGMVYVGTFGVLFGYFTLIMLFSS-----KPALAIPLIFFVFLIAGVLLYKAKITRRY 342


>gi|260466947|ref|ZP_05813129.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259029244|gb|EEW30538.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 360

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/359 (11%), Positives = 94/359 (26%), Gaps = 10/359 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y         +   L ++ + ++I   +     +     +    + ISG  +P ++
Sbjct: 4   TLGRYFFFRYVAITIWFFLGLLALVFLIDFTELSGRTTGLPGFTYGTAMAISGLRMPMIM 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF         L S+NR  EL+I  + G S    + P    A+L  +      N +
Sbjct: 64  LQTVPFVGLFSAMATLVSLNRRYELVIARSAGVSAWQFLLPCCIGALLFGVVSVGIINPL 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD----DLYIKISKYNPNNTLQGIFIVD 177
                S  +Q+  + +   + +   +   +        D  I               +  
Sbjct: 124 AAHAFSLSEQIETQLRSGKSNTVSADAAPWIRQKTSSGDTIIGARAILNQGLEMSDAVFF 183

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D Q +      +    L      L D +  R    +  I            +      
Sbjct: 184 ILDQQGNIAERKDAVRAYLRDGYWELQDVKTFR----NGVIQSAANDRVPTNLKPEFVQE 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            + +        L                 +  +F   +      V   LI+   + + A
Sbjct: 240 RLARPETIPFYDL-PGKIEVARSFGLKANAFAMQFDSLVALPFLLVAMTLIAATVSMRFA 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            + Q   +    +       V              P  +      +  +      ++ K
Sbjct: 299 RMGQSATMILGGVVAGFLLYVVSVLVKAFGVAGFVPTAVAAWVPVVVAMFFGVTFLLYK 357


>gi|165919041|ref|ZP_02219127.1| putative permease [Coxiella burnetii RSA 334]
 gi|165917236|gb|EDR35840.1| putative permease [Coxiella burnetii RSA 334]
          Length = 370

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 119/342 (34%), Gaps = 21/342 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I  + L + L ++ I    Q +  +N  ++   ++  +++I    +P +L 
Sbjct: 2   IVFRYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAAAGKITVKAVMEIMSLQVPLLLG 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +     L  M  + E++I+   G SR  ++  ++ LA  + + +      +E
Sbjct: 62  YLLPLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSVE 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV------ 176
           PK +    ++   A    +   +    F  L  +  +  +    ++  + + +       
Sbjct: 122 PKMQWYRVKILKDAVATASLEKIVPGRFQPLSSNGQVFYAGGVNDHHQKMLNVFLAQSET 181

Query: 177 --DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               +         A   S       I+  +G  +   P      +MKF  Y ++  S  
Sbjct: 182 AGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLTSP- 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +  I  + +    S L + +  +            +E   R+   L   +F L+      
Sbjct: 241 AMDITGRVDAMPTSKLWHLHSKDLKAA--------AELQWRIAMPLSVWLFALL---IVP 289

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                 ++ K   +  ++ I  G +  F ++     ++    
Sbjct: 290 LSEANPRKGKFAQMLPAVLIYIG-YANFMFLGRTWIEDGVIS 330


>gi|71064627|ref|YP_263354.1| hypothetical protein Psyc_0046 [Psychrobacter arcticus 273-4]
 gi|71037612|gb|AAZ17920.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 402

 Score = 72.0 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/385 (10%), Positives = 118/385 (30%), Gaps = 30/385 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K    Y+      + + + + +  +  V   L  ++ +   + ++   +K   Y  P  
Sbjct: 21  LKVLSRYVKLNALLAIIAAVIGLWALQLVFSYLSELDSL-DDSYTMGEAIKYIFYRSPYF 79

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     L  +  N+EL+++   G S   ++  VL  A++  +   I    
Sbjct: 80  LEQFIPTGALLGAVIGLGLLANNSELVVMRAAGISVYRIVSWVLQPALIFVVLALIINQF 139

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF------ 174
           + P       ++++K   +L  S           ++     +K + ++ L   +      
Sbjct: 140 VLPHSNQLANEINSKGNSSLVTSVRGYWTVQPRFENTKRGTTKPDGSDILYIDYADVKGN 199

Query: 175 ------IVDSRDTQTHKIYYAQSGSIDLDR--------------QAIILNDGEVHRKSPI 214
                      +       +A+ G                        LN+      +  
Sbjct: 200 IGQVKRWHLDNNGSLQTAIHAEGGQYIGREPLDTVSSKPSEQYRYEWQLNNMTKLMINQG 259

Query: 215 SKDISIMK-FKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFH 273
            +    +    + +L     +   +  +A D +L+ L   +      + +   ++   F 
Sbjct: 260 FESSQAISPTDTLSLPFAPESVYLLTHQAEDLSLTQLY-EHRQFMRQQGQRSLSHELAFW 318

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
           ++L   L  +   +++                  + +   + F         +       
Sbjct: 319 QKLLSPLSILSLVIVACSFVFGSLRTHSLGLRIVVALLFGLLFSYVQDLVGFVSLATGFS 378

Query: 334 YYIPILYLFLFCISSIFLLMIKKKY 358
             + ++ L +   + +   ++K++ 
Sbjct: 379 PLL-MVLLPIIASALLGEYLLKRQM 402


>gi|212218293|ref|YP_002305080.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuK_Q154]
 gi|212012555|gb|ACJ19935.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuK_Q154]
          Length = 372

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 119/342 (34%), Gaps = 21/342 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I  + L + L ++ I    Q +  +N  ++   ++  +++I    +P +L 
Sbjct: 4   IVFRYLCKEILGTLLATTLILLIIFMTNQFIHYLNDAAAGKITVKAVMEIMSLQVPLLLG 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +     L  M  + E++I+   G SR  ++  ++ LA  + + +      +E
Sbjct: 64  YLLPLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSVE 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV------ 176
           PK +    ++   A    +   +    F  L  +  +  +    ++  + + +       
Sbjct: 124 PKMQWYRVKILKDAVATASLEKIVPGRFQPLSSNGQVFYAGGVNDHHQKMLNVFLAQSET 183

Query: 177 --DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               +         A   S       I+  +G  +   P      +MKF  Y ++  S  
Sbjct: 184 AGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLTSP- 242

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +  I  + +    S L + +  +            +E   R+   L   +F L+      
Sbjct: 243 AMDITGRVDAMPTSKLWHLHSKDLKAA--------AELQWRIAMPLSVWLFALL---IVP 291

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                 ++ K   +  ++ I  G +  F ++     ++    
Sbjct: 292 LSEANPRKGKFAQMLPAVLIYIG-YANFMFLGRTWIEDGVIS 332


>gi|255533443|ref|YP_003093815.1| permease YjgP/YjgQ family protein [Pedobacter heparinus DSM 2366]
 gi|255346427|gb|ACU05753.1| permease YjgP/YjgQ family protein [Pedobacter heparinus DSM 2366]
          Length = 480

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 86/224 (38%), Gaps = 2/224 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   L +++   R F ++   ++FI  ++ + + ++ +        ++L++  Y     
Sbjct: 1   MKKIHLLLVKAFIRPFFVTFFIVMFILLMLFLFKYVDDLIGKGFEWYVILELMYYASAAN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    + +     ++  N EL+ I + G S    + P+L L I L+I  F+    
Sbjct: 61  VSMALPLSILLSSIMTFGTLGENYELVAIKSAGVSLQKAMMPLLVLIIFLAISSFLFSEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK       L    +       ++E +F        I++ K   +       ++    
Sbjct: 121 MLPKANLKFGSLLWDIRNKKLSFLIKEGVFNNSIPGYSIRVDKKGSDGISLHNVMIYDHT 180

Query: 181 TQT--HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK 222
           +     KI  A+SG +  +   ++L   +  R    +   S   
Sbjct: 181 SNNGIAKIIIAKSGKMSKNDDYLLLTLHDGVRYEESNGKSSSYN 224



 Score = 40.4 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 4/103 (3%)

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
           ++    +    +   R   +     EF K+ T     ++   I    A   A++R+    
Sbjct: 339 SILQTTSGRLQDHADRVRNIIKVEIEFQKKFTLAASCLLLFFIG---APLGAIIRKGGLG 395

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
            P+ +++   F  +   + +  K        P   ++L  I  
Sbjct: 396 LPVVMAIVF-FLFYHIIATVSEKSATQGSLTPFFGMWLAFIIL 437


>gi|269213541|ref|ZP_06158032.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
 gi|269146393|gb|EEZ72811.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
          Length = 182

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/184 (7%), Positives = 57/184 (30%), Gaps = 2/184 (1%)

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              D            ++  +  +  L +           ++S    +++ +  +     
Sbjct: 1   MRNDKNELMQATEAESAVLNNDGSWQLKNIRRSTLGEDKVEVSTAAEETWPIAVKRNLMD 60

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +++K +  ++  L     ++     +  + Y   + ++L   +   +  L++     + 
Sbjct: 61  VLLVKPDQMSVGELT-TYISHLENNNQNTQIYAIAWWRKLVYPIAAWVMALVAFAFTPQT 119

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                        I L + F           ++   P ++    L     + + + +I++
Sbjct: 120 TRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAG-ALPTIAFALLAVWLIRR 178

Query: 357 KYTK 360
           +  +
Sbjct: 179 QEKR 182


>gi|326626150|gb|EGE32495.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 335

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 115/324 (35%), Gaps = 19/324 (5%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+   I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGSI---DLDRQAIILNDGE 207
             +   +   +    +    +F+   R        +  A SG +       Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F++Y         +      +  ++  L N + +           
Sbjct: 181 RFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWNTDND----------R 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E H R+T      +  L+         +  ++ ++  +  ++ +    F   + I  
Sbjct: 231 ARAELHWRITLVFTVFMMALM---VVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSIKS 287

Query: 328 KIEQNPYYIPILYLFLFCISSIFL 351
              +     P+++++   +  + L
Sbjct: 288 NGGK-GKLDPVIWMWAVNLIYLAL 310


>gi|215919050|ref|NP_819829.2| putative permease [Coxiella burnetii RSA 493]
 gi|206583935|gb|AAO90343.2| hypothetical membrane spanning protein [Coxiella burnetii RSA 493]
          Length = 372

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 119/342 (34%), Gaps = 21/342 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I  + L + L ++ I    Q +  +N  ++   ++  +++I    +P +L 
Sbjct: 4   IVFRYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAAAGKITVKAVMEIMSLQVPLLLG 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +     L  M  + E++I+   G SR  ++  ++ LA  + + +      +E
Sbjct: 64  YLLPLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSVE 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV------ 176
           PK +    ++   A    +   +    F  L  +  +  +    ++  + + +       
Sbjct: 124 PKMQWYRVKILKDAVATASLEKIVPGRFQLLSSNGQVFYAGGVNDHHQKMLNVFLAQSET 183

Query: 177 --DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               +         A   S       I+  +G  +   P      +MKF  Y ++  S  
Sbjct: 184 AGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLTSP- 242

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +  I  + +    S L + +  +            +E   R+   L   +F L+      
Sbjct: 243 AMDITERVDAMPTSKLWHLHSKDLKAA--------AELQWRIAMPLSVWLFALL---IVP 291

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                 ++ K   +  ++ I  G +  F ++     ++    
Sbjct: 292 LSEANPRKGKFAQMLPAVLIYIG-YANFMFLGRTWIEDGVIS 332


>gi|321222551|gb|EFX47623.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 335

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 115/324 (35%), Gaps = 19/324 (5%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+   I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGSI---DLDRQAIILNDGE 207
             +   +   +    +    +F+   R        +  A SG +       Q + LN G 
Sbjct: 121 ATNGNSVLFIESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F++Y         +      +  ++  L N + +           
Sbjct: 181 RFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWNTDND----------R 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E H R+T      +  L+         +  ++ ++  +  ++ +    F   + I  
Sbjct: 231 ARAELHWRITLVFTVFMMALM---VVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSIKS 287

Query: 328 KIEQNPYYIPILYLFLFCISSIFL 351
              +     P+++++   +  + L
Sbjct: 288 NGGK-GKLDPVIWMWAVNLIYLAL 310


>gi|310822423|ref|YP_003954781.1| hypothetical protein STAUR_5182 [Stigmatella aurantiaca DW4/3-1]
 gi|309395495|gb|ADO72954.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 373

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/365 (10%), Positives = 108/365 (29%), Gaps = 12/365 (3%)

Query: 1   MK-SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+ +   Y+ R   R  +     ++ +  V+  + R    +     +  +L++       
Sbjct: 1   MRGTLFRYVARLYARFAVGILAALLTVFLVVDFVDRSRAYTGEGW-VLAVLELYWNKALV 59

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              ++ P    +     ++++ +  E+  +        +L  PV  +A+   + L   + 
Sbjct: 60  TTQLLGPAALLLAAGAAVSTLRKRGEVTALRALTFGPASLYLPVGAVALAACLGLIAFDE 119

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSY-LEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
            +  +    + +++ +                +    +    +   +     + + I+  
Sbjct: 120 RVVAQASRRVDEITTQRFNRWGDWRLYYTPKQWFRRGEHVFFLRSGSAQEGFRDVAILTL 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD-ISIMKFKSYTLQTESANSST 237
                          + L+     L        SP  +  +S      Y L   + +   
Sbjct: 180 TADFKLARRLDADTMVPLEGNRWRLTGVVERSFSPDGRTAVSAAPEAEYDLGVPARSFLI 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +     L  L     +           Y    + R    +  +   L+++  A +  
Sbjct: 240 RPGRPEQMRLPEL-REQISARTEVGLDSRQYELALYNRFAYPMAGLPAALVAVGLALRP- 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLLM 353
             R+      I   L I+  + WG   +   +       P L  +L      + +  L +
Sbjct: 298 -NRKGHLTVAIVEGLLIAMAM-WGLIVVSKTLVTTERMAPGLAAWLPSGVLVVVATVLWL 355

Query: 354 IKKKY 358
            ++ +
Sbjct: 356 RREGW 360


>gi|15639869|ref|NP_219319.1| hypothetical protein TP0884 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189026107|ref|YP_001933879.1| hypothetical protein TPASS_0884 [Treponema pallidum subsp. pallidum
           SS14]
 gi|3323201|gb|AAC26574.1| conserved hypothetical integral membrane protein [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189018682|gb|ACD71300.1| hypothetical integral membrane protein [Treponema pallidum subsp.
           pallidum SS14]
          Length = 362

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 130/358 (36%), Gaps = 15/358 (4%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + +  L+  L    + +V  +L     + +   S   ++++  Y IP  L  VTP
Sbjct: 2   YVCEVVFKHILVGVLCFFLVFFVNNVLLFAQTLLTKHVSAADVVRLLLYSIPAALIYVTP 61

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
           F   + +   L  +  N ELL +   G S   LI P+L + +  ++F+F+  +++ P   
Sbjct: 62  FAVLVGSLLGLGRLRNNLELLALQVLGVSPRFLIFPLLSIGLCSALFVFVFSDVVVPASF 121

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
             ++Q+  +   ++      E+   R  + + + + +   +   Q + +  S       +
Sbjct: 122 IRLRQVYWRVLSSVPSLGF-ESHTTRKHNGVILSVGEVFHSVMYQLLIVDKSDSRSLKVV 180

Query: 187 YYAQSGSIDLDRQAIILNDGEV-------HRKSPISKDISIMKFKSYTLQTESANSSTIV 239
              +S       Q +              +R  P   D+       Y + T+       +
Sbjct: 181 SSRKSVLESSADQTVPFTIRMHDPCMLIVYRTRPRICDLIYGGRADYHVHTQQTQPEYFM 240

Query: 240 L-KANDQNLSFLLNPN--PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  +   L             P  + TY+ EF K+ +  +  V+F  +S   +   
Sbjct: 241 GLGPGGFSTCSLYREIQEKIKAKENPRHIATYQLEFQKKFSHPISVVLFIFLSFGLSTLS 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            +  Q K     F+   I    +W  S    ++      +P L L++   +  F  +I
Sbjct: 301 NISSQGKG----FVGGLIVVLGYWIISIGGQELALRLSIVPSLALWIPNAALFFTALI 354


>gi|304321347|ref|YP_003854990.1| putative permease [Parvularcula bermudensis HTCC2503]
 gi|303300249|gb|ADM09848.1| predicted permease [Parvularcula bermudensis HTCC2503]
          Length = 364

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/341 (11%), Positives = 102/341 (29%), Gaps = 11/341 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPT 59
           M     Y+ +      L   L I  I   + +++ +  ++          L+++    P 
Sbjct: 1   MTVTFGYLAKRTLGGVLGLLLVIWLIVVSVDLIEAMRDIARIPGAGPIAALRLTLLRTPQ 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++  ++PF F   T      M R +E+ ++   G S   LI P + LA+   + +  + +
Sbjct: 61  LILSLSPFIFLFGTLWAYGQMARMSEIAVLRAAGLSVWRLIFPPVILAVAAGLLIATTLD 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD------DLYIKISKYNPNNTLQGI 173
            +  +   T + +  +A+     +    +L+ R ++       L         +  L+ +
Sbjct: 121 PLAARLAETAQTVKNEARSGEEAAAKRPHLWLRQNEIGSDGIALLHAERYRENDPVLEEV 180

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
            +                 ++   +   ++        +  +  I         +     
Sbjct: 181 TVWRRTQDGAFIERLDAPRALIDAQVLRLMQARRSTSIATTAPQIEAEIEVPVAIDLRLL 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +       A+  ++  L                 +R  +H   +  L      +++   A
Sbjct: 241 DQD--RQTADTLSVWAL-PETIRLMGDAGMTTTKFRLRYHALWSLPLKLAAMVILACAFA 297

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
                 R       + + +   F +F          E    
Sbjct: 298 LGMNA-RGGGTALLMGMGILAGFLLFILSELSAAIAEAAIV 337


>gi|205356326|ref|ZP_03223091.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345711|gb|EDZ32349.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 341

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 115/324 (35%), Gaps = 14/324 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L     + L     +  I  ++  +Q   L SS   S   LLK+ G+++P +
Sbjct: 1   MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEISFLDLLKLYGFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  +++  E +++   G S + L K  L +A L+S F+ +   +
Sbjct: 61  LIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P                + F+Y       +  D +     + +       ++    + 
Sbjct: 121 MIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSDKYENIIMYRPKHKA 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS-PISKDISIMKFKSYTLQTESANSSTIV 239
               ++  A+   +     +   +  +    +    + I   +F +  + T+    +   
Sbjct: 181 DDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQSIFSGEFDTLVVNTQFNTDNLQT 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            K  +           N+ N  P+    +       +T  LFP+   L ++         
Sbjct: 241 KKFYE---------YWNDLNENPQRAREFVI----YITIALFPLASTLFALCFGLVTYRY 287

Query: 300 RQRKKIHPIFISLSISFGVFWGFS 323
            +      +F  ++I FG+   FS
Sbjct: 288 EKGYVYLGMFGVIAIYFGLLSSFS 311


>gi|332284928|ref|YP_004416839.1| hypothetical protein PT7_1675 [Pusillimonas sp. T7-7]
 gi|330428881|gb|AEC20215.1| hypothetical protein PT7_1675 [Pusillimonas sp. T7-7]
          Length = 371

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 121/362 (33%), Gaps = 8/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I     +    ++ +   + +++ +   ++ T   N++  ++ +   T 
Sbjct: 1   MSLFKRSVVSEIMSHAGVVFSTLLVVWLSVLLVRLLGEAANGTIGANVVFGLATFSSITA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++      +     +T   R +E+++   +G S    I+PVL  A+ ++I + +   +
Sbjct: 61  LPVILSVSLFIAVLTTVTRNFRESEMVVWFASGLSLKDWIRPVLRCAVPVAIIIAVLTLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFR-LDDDLYIKISKYNPNNTLQGIFIVDSR 179
             P     I +   + +     S +    F    D        + N      G  I    
Sbjct: 121 ASPWAYRQISEYRQRFEQRSDLSKVTAGQFIETEDGARVFFAEEPNEPGEEMGNVIARVV 180

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
             +   +  A+S  I       + ++L DG  +   P   D  +M+F SY  + ES  S 
Sbjct: 181 TPEWLSVVTAESARIQTEENGDRFLVLTDGHRYDLKPDMPDFRLMEFDSYGFRLESNASE 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +          S  +   P    +  +          +         +  L   + A   
Sbjct: 241 SSAEAVRRMAESQ-IKARPTLKLFTDDNDRALSQIMWRVALPLAALNLALLAIPLGAVNP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            L R    +    + L     +     +I         +   L+L     + +   M+ +
Sbjct: 300 RLGRSGDFLIAGLVGLLYMNLINLSRGWIGS---GQLNFGIGLWLVHAIFTGLMFYMMWR 356

Query: 357 KY 358
           K 
Sbjct: 357 KL 358


>gi|153209375|ref|ZP_01947370.1| putative permease [Coxiella burnetii 'MSU Goat Q177']
 gi|120575375|gb|EAX31999.1| putative permease [Coxiella burnetii 'MSU Goat Q177']
          Length = 370

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 119/342 (34%), Gaps = 21/342 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I  + L + L ++ I    Q +  +N  ++   ++  +++I    +P +L 
Sbjct: 2   IVFRYLCKEILGTLLATTLILLIIFMTNQFIHYLNDAAAGKITVKAVMEIMSLQVPLLLG 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +     L  M  + E++I+   G SR  ++  ++ LA  + + +      +E
Sbjct: 62  YLLPLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSVE 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV------ 176
           PK +    ++   A    +   +    F  L  +  +  +    ++  + + +       
Sbjct: 122 PKMQWYRVKILKDAVATASLEKIVPGRFQPLSSNGQVFYAGGVNDHHQKMLNVFLAQSET 181

Query: 177 --DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               +         A   S       I+  +G  +   P      +MKF  Y ++  S  
Sbjct: 182 AGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLTSP- 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +  I  + +    S L + +  +            +E   R+   L   +F L+      
Sbjct: 241 AMDITGRVDAMPTSKLWHLHSKDLKAA--------AELQWRIAMPLSVWLFALL---IVP 289

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                 ++ K   +  ++ I  G +  F ++     ++    
Sbjct: 290 LSEANPRKGKFAQMLPAVLIYIG-YANFMFLGRTWIEDGVIS 330


>gi|289678194|ref|ZP_06499084.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae FF5]
          Length = 284

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 68/253 (26%), Gaps = 18/253 (7%)

Query: 108 ILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN 167
            L                            +   F  L +        +L    S+    
Sbjct: 24  WLSFSLAPQGATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGV 83

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFK 224
              +     D        +  A+ G         + +IL +G  +  +P + D  ++K+ 
Sbjct: 84  FISEKRMSSDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYD 143

Query: 225 SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
           +Y         S  +        S L+                  +E   R++  L   I
Sbjct: 144 TYGAMLPKPEISEEITDREAIPTSELI----------GNPAPRSVAELQWRISLPLSVFI 193

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLF 342
             L++I       +  ++ +   +  ++ +          +   +   + P  + + ++ 
Sbjct: 194 VTLMAIPL---SRVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVH 250

Query: 343 LFCISSIFLLMIK 355
              +S   LL   
Sbjct: 251 AIYLSIGLLLFYW 263


>gi|134302362|ref|YP_001122331.1| YjgP/YjgQ permease [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050139|gb|ABO47210.1| putative permease YjgP/YjgQ family [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 351

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 124/357 (34%), Gaps = 8/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI R +  SFL+  +    + ++   L +++  +++  +  +++  +   +P +
Sbjct: 1   MNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSNNTANVSNFELIIN-TLIQLPGI 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    
Sbjct: 60  LYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  +  +            +    +      + +     +       +Q   + + R 
Sbjct: 120 IAPILQRQVDTNMVTYNTHDLWFKTPDGFMNIANIEPTNGKAYGIRKFMVQDNKVREIRY 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            ++       S ++   R+ I          S   K I I+   +  + +     S   +
Sbjct: 180 AESATYINDASANVFNIRKIIF-------PASDGQKHIDIVTNMTNAVWSNPLPISVAKV 232

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              + N     +   +      +  ++   +F + + Q L  +I  L+++  +       
Sbjct: 233 ITINDNNYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGSTRSS 292

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +      +F +       I  I   P  +      +  +  +  L IK K
Sbjct: 293 TLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSK 349


>gi|21230125|ref|NP_636042.1| hypothetical protein XCC0650 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769884|ref|YP_244646.1| hypothetical protein XC_3584 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21111655|gb|AAM39966.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575216|gb|AAY50626.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 360

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 131/365 (35%), Gaps = 15/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L+L + + + +      
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGIGPRRMLRPILWLVVPVVVVIGACSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T + +   A  ++  + LE   F  L     + ++  +P+    G   +  + 
Sbjct: 121 LGPWASRTAELMLEDANRSVVMAGLESGKFTPLSGGGVVYLTTISPDGKGLGKVFMQRQK 180

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESANS 235
                +  A+ G++       + + L DG        ++  D  +M F S  +       
Sbjct: 181 DDRIDVVTAERGAMFFEGKTDRYLRLEDGHRIEGPAGAQGLDYRLMTFASNDVALPDRTK 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +         +   L+           +     R+E H+RL   L  + F L+++  +  
Sbjct: 241 AHDANDPEVMSTFKLI----------GDARPIARAELHRRLAPPLLALAFALLTLPLSRS 290

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               ++  +I   F++  +   +    +  I   +                 SI+     
Sbjct: 291 APRQQRYGRIMLAFLAYLVGTNLMIVGTQWIANGKVPGALGLWWLTLPLLAVSIWAYARD 350

Query: 356 KKYTK 360
            + ++
Sbjct: 351 GRLSR 355


>gi|330874293|gb|EGH08442.1| hypothetical protein Pgy4_05807 [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 213

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 67/214 (31%), Gaps = 3/214 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +  +   +  +  + S T +L   L       P  
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDI-SDTYTLADALSYVMLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++  ++EL I+   G S   ++  V+   +LL +   +    
Sbjct: 60  VYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ +         L+ R  ++     +       L          
Sbjct: 120 VAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGEEFIHINTVQPNGLMLGVTRYRFDDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI 214
                  +A+  +   D     L D      +  
Sbjct: 180 RHMLTSSFAKEANFKTD--YWELKDVSTTHFNDG 211


>gi|33602710|ref|NP_890270.1| putative integral membrane protein [Bordetella bronchiseptica RB50]
 gi|33577152|emb|CAE35709.1| putative integral membrane protein [Bordetella bronchiseptica RB50]
          Length = 370

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/362 (9%), Positives = 124/362 (34%), Gaps = 8/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I     +    +V +   + +++ +   +  +   +++L ++ +   T 
Sbjct: 1   MSLFKRSVVSEITSHAGVVFSTLVVVWLSVLLVRLLGEAAGGSIGADVVLGLAAFSTITA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP +      +     +T   R +E+++   +G S    ++PV  +A+ +++ +     +
Sbjct: 61  LPTILAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWLRPVARVAVPIAMLVAALTLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P     I +   + +     S +    F        +  ++       +   +     
Sbjct: 121 ASPWAYRQIGEYRERFEQRSDLSKVTAGQFAESGRGDRVFFAEDPVRPGDELGAVFARSI 180

Query: 181 TQTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                     S +    +    + ++L +G  +   P + +I ++ F  Y ++ ES    
Sbjct: 181 DPEWLSVLTASNARSETLPNGDRFLVLGEGHRYDLKPGTPEIRLVNFDQYGVRLESKAGE 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + +A         +   +      +  ++  S+   R+   L  +   L++I      
Sbjct: 241 DPMAEARAAAER--SSKARSTMQLVQDNTDSSWSQIMWRVAMPLAALNLALLAIPLGAVN 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             + +   +    +   +   +       I   + +  +   ++     ++ +   ++ +
Sbjct: 299 PRLGRSGDLLIAGLVGLLYMNMINLSRAWISSGKIS--FSIGVWAVHAVVALLAAYLLMR 356

Query: 357 KY 358
           + 
Sbjct: 357 RL 358


>gi|291060243|gb|ADD72978.1| putative permease, YjgP/YjgQ family [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 365

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 131/361 (36%), Gaps = 15/361 (4%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
             +Y+   + +  L+  L    + +V  +L     + +   S   ++++  Y IP  L  
Sbjct: 2   LFVYVCEVVFKHILVGVLCFFLVFFVNNVLLFAQTLLTKHVSAADVVRLLLYSIPAALIY 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           VTPF   + +   L  +  N ELL +   G S   LI P+L + +  ++F+F+  +++ P
Sbjct: 62  VTPFAVLVGSLLGLGRLRNNLELLALQVLGVSPRFLIFPLLSIGLCSALFVFVFSDVVVP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                ++Q+  +   ++      E+   R  + + + + +   +   Q + +  S     
Sbjct: 122 ASFIRLRQVYWRVLSSVPSLGF-ESHTTRKHNGVILSVGEVFHSVMYQLLIVDKSDSRSL 180

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEV-------HRKSPISKDISIMKFKSYTLQTESANSS 236
             +   +S       Q +              +R  P   D+       Y + T+     
Sbjct: 181 KVVSSRKSVLESSADQTVPFTIRMHDPCMLIVYRTRPRICDLIYGGRADYHVHTQQTQPE 240

Query: 237 TIVL-KANDQNLSFLLNPN--PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +       +   L             P  + TY+ EF K+ +  +  V+F  +S   +
Sbjct: 241 YFMGLGPGGFSTCSLYREIQEKIKAKENPRHIATYQLEFQKKFSHPISVVLFIFLSFGLS 300

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
               +  Q K     F+   I    +W  S    ++      +P L L++   +  F  +
Sbjct: 301 TLSNISSQGKG----FVGGLIVVLGYWIISIGGQELALRLSIVPSLALWIPNAALFFTAL 356

Query: 354 I 354
           I
Sbjct: 357 I 357


>gi|326316899|ref|YP_004234571.1| permease YjgP/YjgQ family protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373735|gb|ADX46004.1| permease YjgP/YjgQ family protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 365

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 124/334 (37%), Gaps = 17/334 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + +V +   + +++ +   S  + + + ++ + G+ +   LP
Sbjct: 2   LFDSSIRKELARSFGATLVVLVTVVMTMMLIRTLGQASRGSVNPSDVMLVMGFTVLGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L  M R +E++I   +G   + L+ P+L  A  + + +     +I 
Sbjct: 62  TILTLSLFVAVVGALARMYRESEMVIWFASGRGMLHLLPPLLRFAWPVILAIATLALLIW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSRDT 181
           P     I++L  + +       +    F    +      I +  P+N       + S + 
Sbjct: 122 PWANQQIQELKVQYEQRSDVDRIAPGEFQESANGARVFFIDRETPDNQQATNVFIASSEH 181

Query: 182 QTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSSTI 238
               +  A+S  ++        +L+DG+    +     + + +F  Y  +   +A+SS+ 
Sbjct: 182 GRETVTSARSARLETQGSQRMALLSDGQRLETTLDKPGLKVSEFTEYGTRVGGAASSSSD 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                 ++ + L                 +R+E   R    L  + F ++ +  A   + 
Sbjct: 242 DAAVKTRSTAQLF----------ASSDPVFRAELGWRFGLALAALNFVVLGLAVA---SA 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
             +  +   +  +L      +   ++  + +   
Sbjct: 289 NPRAARSTSLVFALFAFVVYYNLMTFGQNWVGAG 322


>gi|110638188|ref|YP_678397.1| permease [Cytophaga hutchinsonii ATCC 33406]
 gi|110280869|gb|ABG59055.1| conserved hypothetical protein; possible permease [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 483

 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 81/204 (39%), Gaps = 2/204 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +L +L+     F+++   + FI  +  IL+ I+ +     S     ++  Y    +L
Sbjct: 5   KRLDLLVLKAFFGPFILTVFVVTFIFLMQTILKYIDELVGKGLSYLDYAELMMYFSMNIL 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    + +     ++ +  EL  I ++G S I ++ P+    +  ++ L+   N +
Sbjct: 65  PVALPLAILLSSLMTFGNLGQFNELTAIKSSGISLIRVMVPIAIWVLGCTVGLYFFNNYV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK       L    +       L+  +F+       IKI +   N++     I+     
Sbjct: 125 VPKANLKAFSLLYDLRQKKPSLDLKPGVFYNGIPGYSIKIVQKFDNDSSIKGVIIYDHTQ 184

Query: 182 --QTHKIYYAQSGSIDLDRQAIIL 203
                 +  A SGS+ L  Q+  L
Sbjct: 185 SRGNTDVIIADSGSMYLFNQSQYL 208



 Score = 42.3 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 46/121 (38%), Gaps = 8/121 (6%)

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
           +++   L  N        + +  +    +++ TQ +   +  LI    A   A++++   
Sbjct: 346 RSIKSYLQGNVERDERFIKEIHEFEVTKYQKFTQAVACFVLFLIG---APLGAIIKKGGL 402

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMIKKKYTK 360
             P+ I + I F  ++ FS    K  +   Y     ++    +     +F +   K  ++
Sbjct: 403 GIPVLICI-IFFIFYYVFSITGEKWTKEGVYPADFAMWFGNGILFCVGLFFMRQAKNDSR 461

Query: 361 I 361
           I
Sbjct: 462 I 462


>gi|323144743|ref|ZP_08079320.1| permease, YjgP/YjgQ family [Succinatimonas hippei YIT 12066]
 gi|322415494|gb|EFY06251.1| permease, YjgP/YjgQ family [Succinatimonas hippei YIT 12066]
          Length = 336

 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/338 (12%), Positives = 110/338 (32%), Gaps = 18/338 (5%)

Query: 32  ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           +++ I+  +  T  ++I+  ++ Y +P +  ++ P    +     L  +  ++E++++ +
Sbjct: 1   MIRLISRAAVGTVPVDIITNLAAYAVPEIAMIMLPLTLFLACLITLGRICSDSEMVVMRS 60

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
            G S   ++   + LA   SI    +   + P   +  + L  + +    F  +E   F 
Sbjct: 61  IGFSPANVMTIAMILAFFTSIVTAFNCIYLVPWASNAKETLMKQTENNPQFLPIESGKFS 120

Query: 152 RLDDDLYI--KISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGSIDLDRQ---AIILN 204
            +         + + +          V         + +  A +G +  D      + L+
Sbjct: 121 SMGGYNIYIENVEEKSDGEKNIANVFVMESPFANVGNSMTIADNGYLVHDENGVLWLELD 180

Query: 205 DGEVHRKSPISKDISIMKFKSYTLQTESANSS-TIVLKANDQNLSFLLNPNPNNPNYRPE 263
            G            +   F  +      +NS        + ++   LLN           
Sbjct: 181 KGSRFEVLTKDGTSNKAIFDKFRAPVAGSNSELQEDDSISSRDTFELLN----------S 230

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
             +    E   RL+      I   I+I  +       +  ++ P  +  +  +       
Sbjct: 231 GEKRGIVEAQWRLSPIFAVFILTFIAIPLSMVNPRQGRFARLMPAILIYASYYMFLLSCR 290

Query: 324 YIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTKI 361
            +I+      Y    +   +F       L + + + K+
Sbjct: 291 NMINSGSWPLYPGLFIVPVVFLFFVGIPLNLPRNFWKL 328


>gi|320537762|ref|ZP_08037685.1| hypothetical protein HMPREF9554_02439 [Treponema phagedenis F0421]
 gi|320145385|gb|EFW37078.1| hypothetical protein HMPREF9554_02439 [Treponema phagedenis F0421]
          Length = 377

 Score = 71.2 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/368 (14%), Positives = 117/368 (31%), Gaps = 11/368 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K   LY+ + +   F +  LF  FI +V  IL     + S       ++ +  Y +P ++
Sbjct: 12  KILFLYLSKELLLYFFVCFLFFFFIFFVNNILLMAEDILSKHAPFKDVMLLMFYSLPMII 71

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF   + T   +     + E L ++  G S   L+ PVL + + +SI  F + +++
Sbjct: 72  ANSAPFAALVGTLMCIGRFFSDLEFLAMNALGVSMKFLLVPVLAVGLFISIVSFFTNDVL 131

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-------KISKYNPNNTLQGIF 174
            P     ++++      +     LE     +  + + I        I +    +  +   
Sbjct: 132 LPASFIQLRKVYWDISTSTPALELESYSIKKNQNAVVISGLIKDGIIDELLIIDKGENKE 191

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                  ++          I               +       I   K     L      
Sbjct: 192 SRILGGKKSELKKSTDPAVIMTLDMNEPQMLIIDGKDEKKYDSIVGKKIAYNVLAKNINP 251

Query: 235 SSTIVLKANDQNLSFLLNPN--PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                L  +D     L          N    LL  Y  EFHK+ +     + F  ++   
Sbjct: 252 VYFNALGPSDMTSYDLYKDIQTRKKNNEDKRLLNIYNMEFHKKFSIPFGALFFVFLAFGI 311

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           +    +  Q        +     + V  G   I    + +  +  +++L    +  +  +
Sbjct: 312 SSVGKVHNQSVGFILGLLIAVAYWAVLMGGQEISLTFDVSGAF--MMWLPNILLLIVGGI 369

Query: 353 MIKKKYTK 360
           ++ ++  +
Sbjct: 370 LLGRRLFR 377


>gi|329114704|ref|ZP_08243462.1| Permease YjgP/YjgQ Family Protein [Acetobacter pomorum DM001]
 gi|326695970|gb|EGE47653.1| Permease YjgP/YjgQ Family Protein [Acetobacter pomorum DM001]
          Length = 358

 Score = 70.8 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/353 (8%), Positives = 100/353 (28%), Gaps = 5/353 (1%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+   +    +     +V +  ++ +L++   +      +  +L  +    P +L  
Sbjct: 6   LLRYLSMALLTRVIFCGAVLVGLLEILALLEQTTPILQRHLGVQGILSFAAMRAPFLLAG 65

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +    +LT M   +E+ I+   G S   L K ++   +++     + ++ + P
Sbjct: 66  ALPLSVLIGALLMLTQMTLASEIAILRACGLSTFGLYKYLIPATLVIGFAGVVLDDQVTP 125

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +    +     +        +            +       N    +    I        
Sbjct: 126 RSEQALAAWWNRTDPHPENGHAFWFHDGNRIAHIGYTSDGGNMLAKVD---IYIRDTNGR 182

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKS-PISKDISIMKFKSYTLQTESANSSTIVLKA 242
            +       +     +  +L++ +        +  +  ++  S+           +  + 
Sbjct: 183 LQQILHAKSADYTHTRGWLLHNVDSITVEGEKTTRLPSVQNMSWDTSLHPWEFIRLSAEN 242

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              + + +L                  +   +R  +    ++  LI++           R
Sbjct: 243 PPLSSTTILGMLQGRL-PSHTSPGFLEAGLLERFLRPASLLVLLLIALPTIYIPPRTGTR 301

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
             +    +   + F +  G    +      P  I  +   +        ++++
Sbjct: 302 SWVPVWCLGCGLLFIIVQGMLRAMGNAGLLPPAIATIPALIIFTLGAITVLLR 354


>gi|254468135|ref|ZP_05081541.1| permease YjgP/YjgQ [beta proteobacterium KB13]
 gi|207086945|gb|EDZ64228.1| permease YjgP/YjgQ [beta proteobacterium KB13]
          Length = 368

 Score = 70.8 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/347 (12%), Positives = 117/347 (33%), Gaps = 14/347 (4%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFA 70
            +  + L + L +  I    + +    L S      + +L I  + +   LP++      
Sbjct: 10  ELFYNSLSTILILSGIVVAQRGVVVFRLASKGIIPNDSILTILVFSLIKYLPILLTLTLF 69

Query: 71  METTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIK 130
           +     L+   R++E++I  ++G    + I+P+LF ++ + + +      + P      +
Sbjct: 70  LTILLTLSRWFRDSEMMIWFSSGLGLTSFIRPILFFSLPIILLIGFLSLYLSPWATQKSE 129

Query: 131 QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQ 190
           +  A  +     + +    F        +   +   +   +   +    +          
Sbjct: 130 EYKAGLKNRDELATISPGSFKESKSKDRVFYVEGFGDLGSKVKNVFVQSEQNGKLGIIVS 189

Query: 191 S-----GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ 245
           +      +     + I+L  G+ +  +  + + + +KF  Y    E      I +   + 
Sbjct: 190 NEGSRVSTSTDKDEYIVLKKGKRYEVNHENNNFTEIKFNDYGFLVERKLPPIIDVNQVEA 249

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
             + LL                  +EF  R++  L  ++  +++I  +       +   I
Sbjct: 250 MPTALLLLT---------NTNREIAEFVWRVSLPLSGIVLIILAIPLSFINPRSGRSANI 300

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
               +  +I   +       I+  + NPY    +   L    + +L+
Sbjct: 301 IIAIMIFAIYNNLMGVTQSYINLGKLNPYVGGAIVHVLIISIASYLM 347


>gi|330975728|gb|EGH75794.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 243

 Score = 70.8 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 81/242 (33%), Gaps = 11/242 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L 
Sbjct: 2   IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A L+ + +      + 
Sbjct: 62  VILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P+  +    L  +      F  L    F   R    +          + L G+FI + R 
Sbjct: 122 PQGATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKRM 181

Query: 181 TQTHKIYYAQSGSIDLDRQ---------AIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           +         +  +               +IL +G  +  +P + D  ++K+ +Y     
Sbjct: 182 SSDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGAMLP 241

Query: 232 SA 233
             
Sbjct: 242 KP 243


>gi|161829745|ref|YP_001596892.1| putative permease [Coxiella burnetii RSA 331]
 gi|161761612|gb|ABX77254.1| putative permease [Coxiella burnetii RSA 331]
          Length = 370

 Score = 70.8 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 118/342 (34%), Gaps = 21/342 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I  + L + L ++ I    Q +  +N  ++   ++  +++I     P +L 
Sbjct: 2   IVFRYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAAAGKITVKAVMEIMSLQAPLLLG 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +     L  M  + E++I+   G SR  ++  ++ LA  + + +      +E
Sbjct: 62  YLLPLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSVE 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV------ 176
           PK +    ++   A    +   +    F  L  +  +  +    ++  + + +       
Sbjct: 122 PKMQWYRVKILKDAVATASLEKIVPGRFQLLSSNGQVFYAGGVNDHHQKMLNVFLAQSET 181

Query: 177 --DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               +         A   S       I+  +G  +   P      +MKF  Y ++  S  
Sbjct: 182 AGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLTSP- 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +  I  + +    S L + +  +            +E   R+   L   +F L+      
Sbjct: 241 AMDITERVDAMPTSKLWHLHSKDLKAA--------AELQWRIAMPLSVWLFALL---IVP 289

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                 ++ K   +  ++ I  G +  F ++     ++    
Sbjct: 290 LSEANPRKGKFAQMLPAVLIYIG-YANFMFLGRTWIEDGVIS 330


>gi|326335584|ref|ZP_08201771.1| YjgP/YjgQ family permease [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692350|gb|EGD34302.1| YjgP/YjgQ family permease [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 481

 Score = 70.8 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 109/299 (36%), Gaps = 20/299 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL     +F+ S L I+ I     I   I+ ++    S+ I++K    ++P +
Sbjct: 1   MKILDRYILSRFIFNFVSSFLIIILIFIFQTIWLYIDELAGKGLSIFIIIKFVALMLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ P    + +   L +   + EL  +  +G S +   + ++   +LLSI +F + N 
Sbjct: 61  IPLILPLTVVLSSIMTLGAFGESYELAAMKASGVSLLKGTRTLILFMLLLSIGVFFTFNN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P        L    +       + + +F  + D       K   N       ++    
Sbjct: 121 LQPWSNRKAVALRDSIKNKQPSLAISQGIFNNVQDFSIKVEKKTGENGEFLHDIVIHKLG 180

Query: 181 TQ--THKIYYAQSGSIDLDRQAI-----ILNDGEVHRKSPISKDISIMKF-------KSY 226
               +  +  A+ G +   ++       IL DG  +     +       F        + 
Sbjct: 181 VDGLSRTVIKAKEGELSGHKKGSNVLQLILKDGTYYEDVKSANSDITFPFVKAKFQVHTL 240

Query: 227 TLQTESANSSTIVLKAND------QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
            +   S N+     ++ +       N++ L +   +      +  + +   F++R    
Sbjct: 241 NIDISSLNTEVSYDESGERDYYKTMNINQLSHALDSIVTNYKQEAKDFGDNFYRRTGMP 299



 Score = 47.7 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
           +L   L+ N +N  Y+ +L+  YR  F  ++   +   +   ++   A   A++R+    
Sbjct: 347 SLINNLDNNKDNVEYQQKLINIYRLTFSDKIALAITCFVLFFVA---APLGAIIRKGGIG 403

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLM 353
            P+ +++ + F  ++    +   +  N    P +  ++  F +  + + +
Sbjct: 404 MPLVVAIGL-FLTYYFSGLLTKNMATNGNINPYIAPWIPTFFLLPLGIYL 452


>gi|33593405|ref|NP_881049.1| putative integral membrane protein [Bordetella pertussis Tohama I]
 gi|33572761|emb|CAE42691.1| putative integral membrane protein [Bordetella pertussis Tohama I]
 gi|332382814|gb|AEE67661.1| putative integral membrane protein [Bordetella pertussis CS]
          Length = 370

 Score = 70.8 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/362 (9%), Positives = 123/362 (33%), Gaps = 8/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I     +    +V +   + +++ +   +  +   +++L ++ +   T 
Sbjct: 1   MSLFKRSVVSEITSHAGVVFSTLVVVWLSVLLVRLLGEAAGGSIGADVVLGLAAFSTITA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP +      +     +T   R +E+++   +G S    ++PV  +A+ +++ +     +
Sbjct: 61  LPTILAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWLRPVARVAVPIAMLVAALTLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P     I +     +     S +    F        +  ++       +   +     
Sbjct: 121 ASPWAYRQIGEYRELFEQRSDLSKVTAGQFAESGRGDRVFFAEDPVRPGDELGAVFARSI 180

Query: 181 TQTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                     S +    +    + ++L +G  +   P + +I ++ F  Y ++ ES    
Sbjct: 181 DPEWLSVLTASNARSETLPNGDRFLVLGEGHRYDLKPGTPEIRLVNFDQYGVRLESKAGE 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + +A         +   +      +  ++  S+   R+   L  +   L++I      
Sbjct: 241 DPMAEARAAAER--SSKARSTMQLVQDNTDSSWSQIMWRVAMPLAALNLALLAIPLGAVN 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             + +   +    +   +   +       I   + +  +   ++     ++ +   ++ +
Sbjct: 299 PRLGRSGDLLIAGLVGLLYMNMINLSRAWISSGKIS--FSIGVWAVHAVVALLAAYLLMR 356

Query: 357 KY 358
           + 
Sbjct: 357 RL 358


>gi|149173512|ref|ZP_01852142.1| hypothetical protein PM8797T_22248 [Planctomyces maris DSM 8797]
 gi|148847694|gb|EDL62027.1| hypothetical protein PM8797T_22248 [Planctomyces maris DSM 8797]
          Length = 388

 Score = 70.8 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/380 (13%), Positives = 123/380 (32%), Gaps = 33/380 (8%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV----------------SSSTES 45
            +F+ Y+L+     F++  +    +  V      I+                       S
Sbjct: 6   TTFDRYLLKRYFHVFVIGFIATYGLYVVFDGFTNIDGFQAGAEKVSSNDLNGLEVDQNAS 65

Query: 46  ---LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKP 102
              L I+L+   Y       M++P    +    V + M R+ EL  + + G     L  P
Sbjct: 66  TSLLWIMLEFYFYQSSLFFDMISPILSVLAGVVVFSLMVRHGELNPVLSAGIPTYRLAIP 125

Query: 103 VLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
           +    I+++  + +++ +I P     ++            +   E ++      +     
Sbjct: 126 LAMATIIVNCVMCLNQEVIIPSIADKLQAERGDMAS---SAQFVEPVYDFSTRIMINGQE 182

Query: 163 KYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK 222
            +     ++    V S+      +      +I             + + +P  +++ I +
Sbjct: 183 VFLTEQKMKNAEFVLSKPMVHDFVTVKSDTAIYQTPTQTRPGGWLLKQATPSYQELEIAE 242

Query: 223 FKSYTLQTESANSSTI------VLKANDQNLSFLLN-----PNPNNPNYRPELLETYRSE 271
           F    +Q     +           +  ++N S L++        NNP++    +   + +
Sbjct: 243 FAREIIQPGPEPNEIFIVTDVGCDQLCNRNFSSLISTSDLIARINNPSFSDLSIRKQKLD 302

Query: 272 FHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
            H RLT+ +  +I  LISI    ++        I      +   FG+   F Y+      
Sbjct: 303 LHSRLTRPIMNLIAVLISIPFVLRKESRSLILNIAICACVMGGLFGISQCFLYMGSTKLI 362

Query: 332 NPYYIPILYLFLFCISSIFL 351
           +P       +      + + 
Sbjct: 363 SPDQAAWFPVITNGTLAAWF 382


>gi|283957186|ref|ZP_06374650.1| hypothetical protein C1336_000800059 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791362|gb|EFC30167.1| hypothetical protein C1336_000800059 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 341

 Score = 70.4 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 114/324 (35%), Gaps = 14/324 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L     + L     +  I  ++  +Q   L SS   S   LLK+ G+++P +
Sbjct: 1   MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEISFLDLLKLYGFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  +++  E +++   G S + L K  L +A L+S F+ +   +
Sbjct: 61  LIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P                + F+Y       +  D +     + +       ++    + 
Sbjct: 121 MIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSDKYENIIMYRPKHKT 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS-PISKDISIMKFKSYTLQTESANSSTIV 239
               ++  A+   +     +   +  +    +    + I   +F +  + T+    +   
Sbjct: 181 DDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQSIFSGEFDTLVVNTQFNTDNLQT 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            K  +           N+ N  P+    +        T  LFP+   L ++         
Sbjct: 241 KKFYE---------YWNDLNENPQRAREFVI----YTTIALFPLASTLFALCFGLVTYRY 287

Query: 300 RQRKKIHPIFISLSISFGVFWGFS 323
            +      +F  ++I FG+   FS
Sbjct: 288 EKGYVYLGMFGVIAIYFGLLSSFS 311


>gi|301346207|ref|ZP_07226948.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB056]
          Length = 201

 Score = 70.4 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 67/186 (36%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +      +IL  I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + ++ + ++  +   +    + 
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWMT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      ++L+    +   F  +    F           S       L+ IF       +
Sbjct: 122 PWGLREFEKLTTTQAVRTGFDLVRPREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAKE 181

Query: 183 THKIYY 188
                 
Sbjct: 182 GKPDVM 187


>gi|218679276|ref|ZP_03527173.1| permease YjgP/YjgQ family protein [Rhizobium etli CIAT 894]
          Length = 312

 Score = 70.4 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 99/305 (32%), Gaps = 9/305 (2%)

Query: 50  LKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAIL 109
           + ++   +P +L    PF        VL  +NR  EL++    G S    + P +  ++L
Sbjct: 3   ILMTAVRLPLILQQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMSPFIAGSLL 62

Query: 110 LSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT 169
           L I    + N +    +     + +  +           + +         +        
Sbjct: 63  LGILTMTALNPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAHTVQ 122

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
             G  ++D+               +  D     L DG     + + +    +  +  ++Q
Sbjct: 123 ENGTKLIDAVLIHFDSS---GQVILRQDAATAKLEDGYWQLNNVVERKPGEIPVRKASVQ 179

Query: 230 TESANSSTIVLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
             +      V +   A +    F L+             +   ++F+  L+Q L  V   
Sbjct: 180 LRTNLKQDFVQERLTAPETIGFFDLSNRIAAAKSFGISTKALETQFNSLLSQPLLLVAMT 239

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
            I+   + K +   Q +    + +   +S  V +  + ++     +    P +  ++  +
Sbjct: 240 FIAATVSLKFSRFNQSR---SVILGGILSGFVLYVITVLVKAFGSSGVVPPFVATWIPVV 296

Query: 347 SSIFL 351
            ++ L
Sbjct: 297 VALAL 301


>gi|57237667|ref|YP_178915.1| hypothetical protein CJE0913 [Campylobacter jejuni RM1221]
 gi|86152068|ref|ZP_01070280.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|86153259|ref|ZP_01071463.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121613133|ref|YP_001000511.1| hypothetical protein CJJ81176_0843 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|157415093|ref|YP_001482349.1| hypothetical protein C8J_0773 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|167005447|ref|ZP_02271205.1| hypothetical protein Cjejjejuni_04350 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|315124344|ref|YP_004066348.1| hypothetical protein ICDCCJ07001_795 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|57166471|gb|AAW35250.1| membrane protein, putative [Campylobacter jejuni RM1221]
 gi|85840853|gb|EAQ58103.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85842985|gb|EAQ60196.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249473|gb|EAQ72433.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|157386057|gb|ABV52372.1| hypothetical protein C8J_0773 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747735|gb|ADN91005.1| Putative membrane protein [Campylobacter jejuni subsp. jejuni M1]
 gi|315018066|gb|ADT66159.1| hypothetical protein ICDCCJ07001_795 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315058276|gb|ADT72605.1| Predicted permease YjgP/YjgQ family [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315928910|gb|EFV08167.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           305]
 gi|315931165|gb|EFV10138.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 341

 Score = 70.4 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 114/324 (35%), Gaps = 14/324 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L     + L     +  I  ++  +Q   L SS   S   LLK+ G+++P +
Sbjct: 1   MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEISFLDLLKLYGFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  +++  E +++   G S + L K  L +A L+S F+ +   +
Sbjct: 61  LIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P                + F+Y       +  D +     + +       ++    + 
Sbjct: 121 MIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSDKYENIIMYRPKHKA 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS-PISKDISIMKFKSYTLQTESANSSTIV 239
               ++  A+   +     +   +  +    +    + I   +F +  + T+    +   
Sbjct: 181 DDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQSIFSGEFDTLVVNTQFNTDNLQT 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            K  +           N+ N  P+    +        T  LFP+   L ++         
Sbjct: 241 KKFYE---------YWNDLNENPQRAREFVI----YTTIALFPLASTLFALCFGLVTYRY 287

Query: 300 RQRKKIHPIFISLSISFGVFWGFS 323
            +      +F  ++I FG+   FS
Sbjct: 288 EKGYVYLGMFGVIAIYFGLLSSFS 311


>gi|283954397|ref|ZP_06371917.1| hypothetical protein C414_000220013 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794014|gb|EFC32763.1| hypothetical protein C414_000220013 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 341

 Score = 70.4 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 117/325 (36%), Gaps = 16/325 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L     + L     +  I  ++  +Q   L SS   S   LLK+ G+++P +
Sbjct: 1   MKLSLRYVLNQFLSTNLSIFFVLFTIVSMVFFIQLAKLTSSIQISFLDLLKLYGFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  +++  E +++   G S + L K  L +A L+S  + +   +
Sbjct: 61  LIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISALMLVVALV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P              + + F+Y       +  D +     + +       ++    + 
Sbjct: 121 MIPIVFELQDNFVNYKSIQVKFNYKTGEFGQKFLDWMIFIEKQDSGKYENIIMYHPKHKA 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
               ++  A+   +    D  A  LN G+++         S  +F +  + T+    +  
Sbjct: 181 DDKEQLIIAKEAHVQRKDDGFAFSLNQGKMYNFDQGQSIFSG-EFDTLVVNTQFNTDNLQ 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             K  +           N+ N  P+    +        T  LFP+   L ++        
Sbjct: 240 TKKFYE---------YWNDLNENPQRAREFVIYA----TIALFPLASTLFALCFGLVTYR 286

Query: 299 VRQRKKIHPIFISLSISFGVFWGFS 323
             +      +F  ++I FG+   FS
Sbjct: 287 YEKGYVYLGMFGVIAIYFGLLSSFS 311


>gi|258542690|ref|YP_003188123.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256633768|dbj|BAH99743.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256636827|dbj|BAI02796.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
 gi|256639880|dbj|BAI05842.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
 gi|256642936|dbj|BAI08891.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
 gi|256645991|dbj|BAI11939.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
 gi|256649044|dbj|BAI14985.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
 gi|256652031|dbj|BAI17965.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655088|dbj|BAI21015.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
          Length = 364

 Score = 70.4 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/352 (8%), Positives = 94/352 (26%), Gaps = 3/352 (0%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+   +    +     +V +  ++ +L++   +      +  +L  +    P +L  
Sbjct: 12  LLRYLSMALLTRVIFCGAVLVGLLEILALLEQTTPILQRHLGIQGILSFAAMRAPFLLAG 71

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +    +LT M   +E+ I+   G S   L K ++   +++     + ++ + P
Sbjct: 72  ALPLSVLIGALLMLTQMTLASEIAILRACGLSTFGLYKYLIPATLVIGFAGVVLDDQVTP 131

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +    +     +        +            +       N    +    I     +  
Sbjct: 132 RSEQALAAWWNRTDPHPENGHAFWFHDGNRIAHIGYTSDGGNMLTKVD---IYIRDASGR 188

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            +       +     +  +L++ +                      +        +   N
Sbjct: 189 LQQILHAKSADYTHTRGWLLHNVDSITVEGEKTTRLPSVQDMGWDTSLHPWEFIRLSAEN 248

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
               S  +                  +   +R  +    ++  LI++           R 
Sbjct: 249 PPLSSTTILGMLRGRLPSHTSPGFLEAGLLERFLRPASLLVLLLIALPTIYIPPRTGTRS 308

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            +    +   + F +  G    +      P  I  +   +        ++++
Sbjct: 309 WVPVWCLGSGLLFIIVQGMLRAMGNAGLLPPAIATIPALIIFTLGAITVLLR 360


>gi|116330556|ref|YP_800274.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116124245|gb|ABJ75516.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 606

 Score = 70.4 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 64/213 (30%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YIL  I   FL++  F   +  V+ + + I L          LL   GYL+   LP
Sbjct: 106 ILNRYILGEILSPFLVALAFFTMVYMVLALQKMIGLFVGKGVDPLRLLDYFGYLLANTLP 165

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M  P    M        ++ ++E+  I + G S   +    L    ++++ +      + 
Sbjct: 166 MTIPMACLMSGIMAAGRLSGDSEITAIRSAGVSFPRIYINFLAFGFVMALVVAYLNFYLS 225

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+    + + +           +    F         +                  +  Q
Sbjct: 226 PENTRKMNEFNKWVLAYNPLLAITPGQFSGDKTQDLFEKRARTMYTDGMNSDTGQLKGVQ 285

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS 215
             +      G+   +    ++  G       I+
Sbjct: 286 IREWEIFLEGNEYFNLGGKMIPMGGSRIIQIIN 318



 Score = 59.2 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 35/97 (36%)

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
               ++L  +  E H+R+   +  +IF  IS           +        + L I F  
Sbjct: 466 QQGKKVLTDFNVEIHRRIAMPISCLIFFFISFPLGLVVKRSGKGMSFTLAVVFLMIYFTF 525

Query: 319 FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           F   S I +  +   +  P     L  + SI +++ +
Sbjct: 526 FTLGSTISYNDKVPDWIGPWSANILIALLSINIMIKR 562


>gi|188993099|ref|YP_001905109.1| Predicted YjgP/YjgQ family permease [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734859|emb|CAP53070.1| Predicted YjgP/YjgQ family permease [Xanthomonas campestris pv.
           campestris]
          Length = 360

 Score = 70.4 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 129/365 (35%), Gaps = 15/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L+L + + + +      
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGIGPRRMLRPILWLVVPVVVVIGACSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T + +   A  ++  + LE   F  L     + ++  +P+    G   +  + 
Sbjct: 121 LGPWASRTAELMLEDANRSVVMAGLESGKFTPLSGGGVVYLTTISPDGKGLGKVFMQRQK 180

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPI--SKDISIMKFKSYTLQTESANS 235
                +  A+ G++       + + L DG            D  +M F S  +       
Sbjct: 181 DDRIDVVTAERGAMFFEGKTDRYLRLEDGHRIEGPAGAQGLDYRLMTFASNDVALPDRTK 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +         +   L+           +     R+E H+RL   L  + F L+++  +  
Sbjct: 241 AHDANDPEVMSTFKLI----------GDARPIARAELHRRLAPPLLALAFALLTLPLSRS 290

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               ++  +I   F++  +   +    +  I   +                 SI+     
Sbjct: 291 APRQQRYGRIMLAFLAYLVGTNLMIVGTQWIANGKVPGAVGLWWLTLPLLAVSIWAYARD 350

Query: 356 KKYTK 360
            + ++
Sbjct: 351 GRLSR 355


>gi|218296306|ref|ZP_03497062.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
 gi|218243378|gb|EED09908.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
          Length = 336

 Score = 70.0 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/340 (12%), Positives = 97/340 (28%), Gaps = 20/340 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+L+ +   + +     + +     +     +  S       +L +  Y +P  L +
Sbjct: 2   LGRYVLKEVLLPYGVGVFLFMALLTFDLLSSLSGVFLSRGAGAEAILLLVLYRLPWTLSL 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P          L+ + R++EL      G   + L+KP+L L++L+++    +   + P
Sbjct: 62  ALPLGLVFAILVGLSRLIRHSELKAAYAAGVPPLALLKPLLLLSLLVALVNLYNLAEVRP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +      +  A+                   +   +  ++       Q          + 
Sbjct: 122 RALEAYDRALARLLYGEGGPSGVLRRQVYALEGQGVYYAEEVVPEVGQNRLYGLRVVDEK 181

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            +IY A+ G  D +    +    E  +  P    +                 S       
Sbjct: 182 GRIYSAKEGVWDREGWQFLGYVLEEGKLKPFQGILPFPA-------LFRPKESLGSKDPY 234

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
           D +    L         R  +    R   H+RL   L     G  +              
Sbjct: 235 DSSTLEELW-------QRARVEPAARFALHRRLADALGGFFLGFAAAALGLSLRE----- 282

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
                F+ + +    ++    +  ++ +      + +L  
Sbjct: 283 -AAWAFLGVVLLIFGYYVLWTLSAQLARYDVSPLLAHLPN 321


>gi|145637643|ref|ZP_01793298.1| predicted permease [Haemophilus influenzae PittHH]
 gi|145269166|gb|EDK09114.1| predicted permease [Haemophilus influenzae PittHH]
          Length = 195

 Score = 70.0 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 52/185 (28%), Gaps = 1/185 (0%)

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
                 +     K+ +A   S   D     L        +      +    +++      
Sbjct: 11  YIYTFDQQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTP 70

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                + L+    ++S L +   +      + +  +   F +++ Q +   +  L+++  
Sbjct: 71  DKLGAVSLRPTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSF 129

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                            I +   F V          +   P     L   L  I  I+ L
Sbjct: 130 IFGSLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWL 189

Query: 353 MIKKK 357
           + +K+
Sbjct: 190 LSRKR 194


>gi|34763637|ref|ZP_00144566.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27886690|gb|EAA23834.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 191

 Score = 70.0 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 52/183 (28%), Gaps = 6/183 (3%)

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            +++ ++  +I  A+S   D D    I ++  ++                      S   
Sbjct: 10  FETQISKPKEIITAKSAKFDTDEDKWIFSNVNIYNVDTKETVTKTEYKSDLYKDDPSNFI 69

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                      +  L        N   E    Y +E  KR +      I   I + A   
Sbjct: 70  RASAEDPRMLTIKELKKTIKEQKNI-GEDTRIYLAELAKRYSFPFASFIVAFIGLSA--S 126

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLM 353
              VR  +    + I +   +G +   S     +  N    P +  ++       I +  
Sbjct: 127 SKYVRGGRTTMNLVICVVAGYGYYLV-SGAFEAMSLNGIVNPFVASWIPNILYLIIGIYF 185

Query: 354 IKK 356
           + +
Sbjct: 186 MNR 188


>gi|313672807|ref|YP_004050918.1| permease yjgp/yjgq family protein [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939563|gb|ADR18755.1| permease YjgP/YjgQ family protein [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 364

 Score = 70.0 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/362 (12%), Positives = 113/362 (31%), Gaps = 5/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+LY L+ + R+F++   F+  I        +   ++    +   +        P  
Sbjct: 1   MNKFQLYFLKILIRNFIVVEAFVYIIYMFFMFFTQSKYIARYGATFKDIFIYDVMRSPVF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P  F +        + R TE+    + G S ++++K ++FL+  +S+ +F     
Sbjct: 61  VSQTLPVSFIVAVVVTFIILIRTTEITAYVSIGGSLLSILKVLIFLSFSVSLVMFFLTEF 120

Query: 121 IEPKCRST---IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
           + PK +      K    + +  +  + L        +  + +              FI  
Sbjct: 121 VVPKSQVKSNDYKTKYIEKREEVRVTTLNNFWIKDKNSFIQVGTIDIINKKLFDIKFIDL 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             + +  K+ Y         ++  +L   EV               +            +
Sbjct: 181 DENGKIVKVRYISQADYIEGKKWSVLEYKEVDTTDVPKIVKEEKNLEQENDFFTKLVDVS 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KR 296
           +V +  +   S  +         +      +   ++ ++   L  V+  ++ +       
Sbjct: 241 LVSQPKELTFSE-IKKIVKFYKSKGLSYSRHMCYYYNKIANILNVVLLVIVVLPFLIDLS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                 +      + + + F     F  +       P++   L  F+F     F    K+
Sbjct: 300 RGFSYVRAAGNGIVIIFLYFIAQSTFFSMGKSGVMPPFWSNFLGYFIFIAVGFFEYYRKR 359

Query: 357 KY 358
           K 
Sbjct: 360 KL 361


>gi|116327644|ref|YP_797364.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116120388|gb|ABJ78431.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
          Length = 606

 Score = 70.0 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 64/213 (30%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YIL  I   FL++  F   +  V+ + + I L          LL   GYL+   LP
Sbjct: 106 ILNRYILGEILSPFLVALAFFTMVYMVLALQKMIGLFVGKGVDPLRLLDYFGYLLANTLP 165

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M  P    M        ++ ++E+  I + G S   +    L    ++++ +      + 
Sbjct: 166 MTIPMACLMSGIMAAGRLSGDSEITAIRSAGVSFPRIYINFLAFGFVMALVVAYLNFYLS 225

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+    + + +           +    F         +                  +  Q
Sbjct: 226 PENTRKMNEFNKWVLAYNPLLAITPGQFSGDKTQDLFEKRARTMYTDGMNSDTGQLKGVQ 285

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS 215
             +      G+   +    ++  G       I+
Sbjct: 286 IREWEIFLEGNEYFNLGGKMIPMGGSRIIQIIN 318



 Score = 59.2 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 35/97 (36%)

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
               ++L  +  E H+R+   +  +IF  IS           +        + L I F  
Sbjct: 466 QQGKKVLTDFNVEIHRRIAMPISCLIFFFISFPLGLVVKRSGKGMSFTLAVVFLMIYFTF 525

Query: 319 FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           F   S I +  +   +  P     L  + SI +++ +
Sbjct: 526 FTLGSTISYNDKVPDWIGPWSANILIALLSINIMIKR 562


>gi|284799561|ref|ZP_06390218.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
 gi|284797389|gb|EFC52736.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
          Length = 195

 Score = 70.0 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/189 (8%), Positives = 59/189 (31%), Gaps = 8/189 (4%)

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           I    D            ++     +  L +           ++S    +++ +  +   
Sbjct: 12  IWQRNDKNELTQAAEAESAVLNPDGSWQLKNIRRSILGEDKVEVSTAAEENWPISVKRNL 71

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              +++K +  ++  L     ++     +  + Y   + ++L   +   +  L++     
Sbjct: 72  MDVLLVKPDQMSVGELT-TYIDHLEKNNQNTQVYAIAWWRKLVYPVAAWVMALVAFAF-- 128

Query: 295 KRALVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                R       +F  + +     +    F +        P+    L   LF + ++  
Sbjct: 129 TPQTTRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPTVLFALLAV-- 186

Query: 352 LMIKKKYTK 360
            +I+++  +
Sbjct: 187 YLIRRQEKR 195


>gi|331001132|ref|ZP_08324763.1| permease, YjgP/YjgQ family [Parasutterella excrementihominis YIT
           11859]
 gi|329569437|gb|EGG51215.1| permease, YjgP/YjgQ family [Parasutterella excrementihominis YIT
           11859]
          Length = 384

 Score = 70.0 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 115/362 (31%), Gaps = 22/362 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            +   +   +  +   +   +  I   I +++ +N  +        +L++  Y     LP
Sbjct: 2   IYRKALTSELSNTAGGAFTVLFSIVVTIGLVRILNQTAGGRYDTGSILEVVAYTSLINLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGT-SRITLIKPVLFLAILLSIFLFISENII 121
            +      +     L    R++E+ +  + G  S  + I+PVL  A+ + + +      +
Sbjct: 62  ALISLALFLAVFMTLNRYWRDSEMFVWFSAGGLSLTSWIRPVLRFALPVVLVVAACSIAV 121

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD--SR 179
            P  R+ ++    +       S L    F        +   +       +   ++    +
Sbjct: 122 SPWSRAQVQAYRDRFAQKEDISKLSSGRFIEAKSGRQVFFLEGVDQEKGKVKTLLMVELK 181

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              +  +  +  G I       + I+L+DG  +   P     S+  F+ Y ++ +S+ S 
Sbjct: 182 KDGSRSVLVSDRGHIENKPNGDRYIVLDDGRKYDTKPSGLGASVSDFREYEIRMDSSPSE 241

Query: 237 T-IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                K N   +  L+                  SE   R++  L  +      ++A   
Sbjct: 242 VGANKKLNAMPIEDLI----------KRTDNRAASELFWRISWPLVALNLA---LLAIPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLM 353
                +  K +    ++ I        S     I   +       LY+ +        L 
Sbjct: 289 SYNNPRSMKYYGQTAAVLIFILYLNALSIFQTWITQGKVGILGATLYMNVPVAVLTTFLF 348

Query: 354 IK 355
            +
Sbjct: 349 YR 350


>gi|227536228|ref|ZP_03966277.1| YjgP/YjgQ family permease [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243835|gb|EEI93850.1| YjgP/YjgQ family permease [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 494

 Score = 70.0 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 91/274 (33%), Gaps = 6/274 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   L IL+   + F+++   ++F+  ++ + + I+ +        ++L++ GY     
Sbjct: 1   MKKIHLLILQSFIKPFIVTFCIVMFVLLMLFLFKYIDDLIGKGFEWYVILQLIGYQCAVQ 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    + +     ++  + EL+ I   G S    + P+  L  L S   F+  + 
Sbjct: 61  MQMALPLSMLLSSIMTFGNLGESYELVAIKAAGVSLRKAMTPLFILVALFSAGSFLFSDY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +  L    +       ++  +F        I+    + + T+    ++    
Sbjct: 121 ILPVVNLKMGSLLYDVRNKKADFLIKPGIFNNTIPGYAIRAKSKSKDGTVLNELMIYDHT 180

Query: 181 TQTHKI--YYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           + +       A+ G +            L DG  + +S      S    K +        
Sbjct: 181 SGSSSNNVLLAKEGFVQNSPDNNYMVLRLKDGIRYEESKGKDSKSYDPRKQFVRFQFKET 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETY 268
                +       +       ++       L+ Y
Sbjct: 241 EQKFDMGDFQMKRTDENLFKSHHAMLNLRQLKMY 274



 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
              L N       +R + +  YR EFH++ T  +  ++   I    A   A++R+     
Sbjct: 347 TETLGNKTLEYKAFRDKDI-RYRLEFHRKFTLAVSCLLLFGIG---APLGAIIRKGGLGL 402

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLLMIKK 356
           P+ +++ I F ++   S +  K  ++    P+  +++ +  ++ + + +  K
Sbjct: 403 PVVMAI-IFFLIYHIISTVSEKAAKDASLAPMTGMWMAIIILTPLAIFLTYK 453


>gi|325917726|ref|ZP_08179914.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
 gi|325536055|gb|EGD07863.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
          Length = 360

 Score = 69.6 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 129/357 (36%), Gaps = 15/357 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + I + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPKRMLRPMLMLVVPVVIIIGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T + +   A  ++  + LE   F  L     + ++  + +    G   +  + 
Sbjct: 121 LGPWASRTAETMLEDANRSVLMAGLESGKFTPLSGGGVVYLTTISADGKNLGKVFMQRQK 180

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRK--SPISKDISIMKFKSYTLQTESANS 235
                +  A+ G++       + + L DG       +  + D  +MKF S  +       
Sbjct: 181 DDRLDVVTAERGAMFFEGKTDRYLRLEDGYRIEGPAAGDTLDYRLMKFASNDVALPDRTR 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +           + LL+          +     R++ H+RL   L  + F L+++  +  
Sbjct: 241 THDANDPEVMWTTQLLS----------DERPAARAQLHERLAPPLLALAFALLTLPLSRS 290

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
               ++  +I   F++  +   +    +  I   +                 +++  
Sbjct: 291 APRQQRYGRIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVWAY 347


>gi|325499819|gb|EGC97678.1| hypothetical protein ECD227_3916 [Escherichia fergusonii ECD227]
          Length = 335

 Score = 69.6 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 113/326 (34%), Gaps = 17/326 (5%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+   I   I+     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKGVLVKAAMILALFTGIVAAINVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGSI---DLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG +       Q + LN G 
Sbjct: 121 ATNGSAVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F+ Y         +      +  +++ L N +           + 
Sbjct: 181 RFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMTTLWNTD----------SDR 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + RLT      +  L+ +  +       +   + P  +   + F +         
Sbjct: 231 ARAELNWRLTLIFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGG 290

Query: 328 KIEQNPYYIPILYLFLFCISSIFLLM 353
           K + +P     ++       ++ + +
Sbjct: 291 KGKLDPTLW--MWTVNLIYLALAIAL 314


>gi|300772186|ref|ZP_07082056.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760489|gb|EFK57315.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 494

 Score = 69.6 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 91/274 (33%), Gaps = 6/274 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   L IL+   + F+++   ++F+  ++ + + I+ +        ++L++ GY     
Sbjct: 1   MKKIHLLILQSFIKPFIVTFCIVMFVLLMLFLFKYIDDLIGKGFEWYVILQLIGYQCAVQ 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    + +     ++  + EL+ I   G S    + P+  L  L S   F+  + 
Sbjct: 61  MQMALPLSMLLSSIMTFGNLGESYELVAIKAAGVSLRKAMTPLFILVALFSAGSFLFSDY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +  L    +       ++  +F        I+    + + T+    ++    
Sbjct: 121 ILPVVNLKMGSLLYDVRNKKADFLIKPGIFNNTIPGYAIRAKSKSKDGTVLNELMIYDHT 180

Query: 181 TQTHKI--YYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           + +       A+ G +            L DG  + +S      S    K +        
Sbjct: 181 SGSSSNNVLLAKEGFVQNSPDNSYMVLKLKDGIRYEESKGKDSKSYDPRKQFVRFQFKET 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETY 268
                +       +       ++       L+ Y
Sbjct: 241 EQKFDMGDFQMKRTDENLFKSHHAMLNLRQLKMY 274



 Score = 45.8 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
              L N       +R + +  YR EFH++ T  +  ++   I    A   A++R+     
Sbjct: 347 TETLGNKTLEYKAFRDKDI-RYRLEFHRKFTLAVSCLLLFGIG---APLGAIIRKGGLGL 402

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLLMIKK 356
           P+ +++ I F ++   S +  K  ++    P+  +++ +  ++ + + +  K
Sbjct: 403 PVVMAI-IFFLIYHIISTVSEKAAKDASLAPMTGMWMAIIVLTPLAIFLTYK 453


>gi|332662936|ref|YP_004445724.1| permease YjgP/YjgQ family protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332331750|gb|AEE48851.1| permease YjgP/YjgQ family protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 538

 Score = 69.6 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 67/193 (34%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +  ++      F+++    +F+  +  +   I+ ++        ++++  Y   + 
Sbjct: 10  LKRIDELVITSFIPPFIVAFSVSLFVLLMQMLWIYIDDLAGKGLGFFTVIELLSYRAVSF 69

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +  ++ +   + EL  + + G S + +++P+L  +I    F +   + 
Sbjct: 70  VPMALPLGILLSSVMLMGNFAEHYELSSMKSAGLSLVRIMRPMLIFSIFTVAFSWYCSDY 129

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P             Q       L+  +F        I I K   +       I+    
Sbjct: 130 LIPAANLKFGSRMWDIQQTKPALRLDVGVFNDDFQGFTIHIGKKMSDGRTIKDVIIYDHS 189

Query: 181 TQTHKIYYAQSGS 193
                 Y   +  
Sbjct: 190 EANSGKYTVITAK 202



 Score = 38.8 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/89 (10%), Positives = 22/89 (24%)

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
           E    +  ++  + +  +   IF  I                +    +   +   +    
Sbjct: 415 ENRVKFIYDWQMKYSIAVVCFIFMFIGAPMGAIVRKGGFGYPLLVAIVFFMLFVILTIFC 474

Query: 323 SYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             I      + Y    L   +     I+L
Sbjct: 475 RKIAETFVVSAYLAAWLPCLILMPLGIWL 503


>gi|86150264|ref|ZP_01068491.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597526|ref|ZP_01100760.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562454|ref|YP_002344233.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85839380|gb|EAQ56642.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190118|gb|EAQ94093.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360160|emb|CAL34954.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|284926071|gb|ADC28423.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315927714|gb|EFV07043.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 341

 Score = 69.3 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 113/324 (34%), Gaps = 14/324 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L     + L     +  I  ++  +Q   L SS   S   LLK+ G+++P +
Sbjct: 1   MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEISFLDLLKLYGFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  +++  E +++   G S + L K  L +A L+S F+ +   +
Sbjct: 61  LIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P                + F+Y       +  D +     + +       ++    + 
Sbjct: 121 MIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSDKYENIIMYRPKHKA 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS-PISKDISIMKFKSYTLQTESANSSTIV 239
               ++  A+   +     +   +  +    +    + I   +F +  + T+    +   
Sbjct: 181 DDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQSIFSGEFDTLVVNTQFNTDNLQT 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            K  +           N+ N   +    +        T  LFP+   L ++         
Sbjct: 241 KKFYE---------YWNDLNENLQRAREFVI----YTTIALFPLASTLFALCFGLVTYRY 287

Query: 300 RQRKKIHPIFISLSISFGVFWGFS 323
            +      +F  ++I FG+   FS
Sbjct: 288 EKGYVYLGMFGVIAIYFGLLSSFS 311


>gi|301028100|ref|ZP_07191378.1| putative inner membrane protein [Escherichia coli MS 196-1]
 gi|312965942|ref|ZP_07780168.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|299878817|gb|EFI87028.1| putative inner membrane protein [Escherichia coli MS 196-1]
 gi|312289185|gb|EFR17079.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|313646462|gb|EFS10924.1| hypothetical protein SF2457T_5377 [Shigella flexneri 2a str. 2457T]
 gi|323171707|gb|EFZ57353.1| hypothetical protein ECLT68_3916 [Escherichia coli LT-68]
 gi|323176176|gb|EFZ61768.1| hypothetical protein ECOK1180_4866 [Escherichia coli 1180]
 gi|323181995|gb|EFZ67406.1| hypothetical protein ECOK1357_4673 [Escherichia coli 1357]
 gi|323189857|gb|EFZ75135.1| hypothetical protein ECRN5871_1644 [Escherichia coli RN587/1]
 gi|327250207|gb|EGE61926.1| hypothetical protein ECSTEC7V_5011 [Escherichia coli STEC_7v]
 gi|332083262|gb|EGI88493.1| hypothetical protein SB521682_5141 [Shigella boydii 5216-82]
 gi|332083699|gb|EGI88917.1| hypothetical protein SD15574_5322 [Shigella dysenteriae 155-74]
 gi|332087092|gb|EGI92226.1| hypothetical protein SB359474_4825 [Shigella boydii 3594-74]
 gi|332748941|gb|EGJ79364.1| hypothetical protein SFK671_4980 [Shigella flexneri K-671]
 gi|332749216|gb|EGJ79637.1| hypothetical protein SF434370_4579 [Shigella flexneri 4343-70]
 gi|332749777|gb|EGJ80190.1| hypothetical protein SF274771_5047 [Shigella flexneri 2747-71]
 gi|332763114|gb|EGJ93357.1| putative transmembrane possibly involved in transport conserved
           inner membrane protein [Shigella flexneri 2930-71]
 gi|333009259|gb|EGK28715.1| hypothetical protein SFK218_0006 [Shigella flexneri K-218]
 gi|333011251|gb|EGK30665.1| hypothetical protein SFK272_0204 [Shigella flexneri K-272]
 gi|333011932|gb|EGK31317.1| hypothetical protein SFK304_5276 [Shigella flexneri K-304]
 gi|333012148|gb|EGK31530.1| hypothetical protein SFK227_5241 [Shigella flexneri K-227]
          Length = 335

 Score = 69.3 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 118/331 (35%), Gaps = 19/331 (5%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+  +I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGSI---DLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG +       Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F+ Y         +      +  ++  L N + +           
Sbjct: 181 RFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTD----------R 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + R+T      +  L+         +  ++ ++  +  ++ +    F   + +  
Sbjct: 231 ARAELNWRITLVFTVFMMALM---VVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKS 287

Query: 328 KIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
              +     P L+++   +  + L ++   +
Sbjct: 288 NGGK-GKLDPTLWMWTVNLIYLALAIVLNLW 317


>gi|255764469|ref|YP_003064807.2| putative permease protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254547820|gb|ACT56867.2| putative permease protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 361

 Score = 69.3 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 114/356 (32%), Gaps = 9/356 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
               Y  +   ++ L   L  + + +VI + +  N +      S++    ++   +P ++
Sbjct: 4   ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +    V  ++NR +EL+I    G S   L+ P +  +ILL IF  +  N I
Sbjct: 64  QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123

Query: 122 EPKCRSTIKQLSAKAQLA---LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
                     L  + +          +          D++I   K  P N +   F   +
Sbjct: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            D +   I+   +    +    + L     ++     +        +  +  +       
Sbjct: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GRIPIDKNSTTLNIPIKMDGFQKF 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +   ++   ++     +            ++F+  +   L  V   LI+   +     
Sbjct: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL--EF 298

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            R  +    +   +   F ++   + +    +          L    ++    ++I
Sbjct: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354


>gi|187477637|ref|YP_785661.1| permease [Bordetella avium 197N]
 gi|115422223|emb|CAJ48747.1| putative permease [Bordetella avium 197N]
          Length = 372

 Score = 69.3 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/360 (11%), Positives = 123/360 (34%), Gaps = 7/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I     +    +V +   + +++ +   +  T   +++L ++ +   T 
Sbjct: 1   MSLFKRSVVSEITSHAGVVFSTLVVVWLSVLLVRLLGEAAGGTIGADVVLGLAAFSTITA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP +      +     +T   R +E+++   +G S    ++PVL +AI +++ +     +
Sbjct: 61  LPTILAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWVRPVLRVAIPVALMVAGLTLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P     I +   + +     S +    F        +  ++   +   +   +     
Sbjct: 121 AAPWAYRQIGEYRERFEQRSDLSKVAAGQFAESGRGNRVFFAEDPVDPGDELGAVFARAI 180

Query: 181 TQTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                       +    ++   + ++L+ G  +   P + ++ +  F+ Y ++ ES    
Sbjct: 181 DPEWFSVLTAKSARGETLENGDRFLVLSKGHRYDLKPGTPEVRLTNFEEYGIRLESKGGE 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +  A           +               S+   R++  L  +   L++I      
Sbjct: 241 DPIASARAAAERSSKARSTTQLMEDNTNSS--WSQVMWRVSLPLAALNLALLAIPLGAVN 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             + +   +    +   +   +       I    + P+ + +  + +  ++    L+ K+
Sbjct: 299 PRLGRSGDLLIAGLVGLLYINLINLSRAWISS-GKLPFGVGVSAIHIIVLAFTVFLLYKR 357


>gi|323157530|gb|EFZ43639.1| hypothetical protein ECEPECA14_0587 [Escherichia coli EPECa14]
          Length = 335

 Score = 69.3 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 118/331 (35%), Gaps = 19/331 (5%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+  +I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGSI---DLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG +       Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F+ Y         +      +  ++  L N + +           
Sbjct: 181 RFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMCTLWNTDTD----------R 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + R+T      +  L+         +  ++ ++  +  ++ +    F   + +  
Sbjct: 231 ARAELNWRITLVFTVFMMALM---VVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKS 287

Query: 328 KIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
              +     P L+++   +  + L ++   +
Sbjct: 288 NGGK-GKLDPTLWMWTVNLIYLALAIVLNLW 317


>gi|323162060|gb|EFZ47932.1| hypothetical protein ECE128010_1825 [Escherichia coli E128010]
 gi|332346340|gb|AEE59674.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 335

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 118/331 (35%), Gaps = 19/331 (5%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+  +I   I+     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMILAVFTAIVAAINVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGSI---DLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG +       Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F+ Y         +      +  ++  L N + +           
Sbjct: 181 RFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTD----------R 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + R+T      +  L+         +  ++ ++  +  ++ +    F   + +  
Sbjct: 231 ARAELNWRITLVFTVFMMALM---VVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKS 287

Query: 328 KIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
              +     P L+++   +  + L ++   +
Sbjct: 288 NGGK-GKLDPTLWMWTVNLIYLALAIVLNLW 317


>gi|255009764|ref|ZP_05281890.1| putative permease [Bacteroides fragilis 3_1_12]
 gi|313147551|ref|ZP_07809744.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136318|gb|EFR53678.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 634

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 84/205 (40%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I++     F+ +    +FI  +  + + ++ +      +++L +   Y   +++
Sbjct: 5   KRLDIFIIKSFLLLFVGTFFICLFIFMMQFLWKYVDELVGKGLEMSVLAQFFFYSALSLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +     +     ELL +   G S + +++P++ L   +    F  +N+I
Sbjct: 65  PMSLPLAVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNVI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ ++ +  L    +       + E +F+   D   +K+ + +    +    I+     
Sbjct: 125 GPRAQAKLGTLLISMKQKSPEVDIPEGVFYDEIDGYNLKVQRKDRKTGMLYDVIIYDFSN 184

Query: 182 Q--THKIYYAQSGSIDLDRQAIILN 204
                +I  A SG +++      L 
Sbjct: 185 NFDNARIIVADSGRLEMTADKQHLY 209



 Score = 43.1 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 11/99 (11%), Positives = 38/99 (38%), Gaps = 4/99 (4%)

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
                 +  ++ E+H+++T  L  ++F  I    A    ++R+     P+ +S+      
Sbjct: 360 AQNDLSIRRHKIEWHRKITISLSCLLFFFIG---APLGGIIRKGGLGMPVIVSVFTFIIY 416

Query: 319 FWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMIKK 356
           +   +          + + + +++    ++ +   +  K
Sbjct: 417 YIIDNTGYKMARDGKWIVWMGMWMSSAILAPLGYFLTYK 455


>gi|126640322|ref|YP_001083306.1| hypothetical protein A1S_0229 [Acinetobacter baumannii ATCC 17978]
          Length = 266

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/269 (11%), Positives = 84/269 (31%), Gaps = 3/269 (1%)

Query: 89  IDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEEN 148
           + + G S   ++  V+  A+LL +  F     + P      + + +   +A         
Sbjct: 1   MRSVGISLWRIVGWVMRSALLLIVLSFALSEWVVPYTNEKAQSVKSHRSVAALGEVKGYW 60

Query: 149 LFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEV 208
                        +       +Q   +  ++D     +  A+ G    D Q  +    ++
Sbjct: 61  SREGQRFIYIDYANSQGNLRDIQ--VVDFNKDYHLQSLINAEQGKFIQDGQWTLQKASQM 118

Query: 209 HRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETY 268
              +  +  ++    +S  L  +      + L   D + S L++       Y  ++ +TY
Sbjct: 119 DILTDGNSILNNHDQQSLGLALQPKYVHMVTLDPEDLSPSQLISFMRYMDEY-SQVPKTY 177

Query: 269 RSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
           +  F +++      +   L++          +       I + + + F     F      
Sbjct: 178 QLAFWQKVASPFSLITLVLVACSFIFGPLRQQSMGFRLVIALFIGLGFYYLQDFLGYASL 237

Query: 329 IEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +        +L   +    +   L+ + +
Sbjct: 238 VYAPSPAWFVLMPIILMFGAGSYLLYRAR 266


>gi|333010222|gb|EGK29655.1| hypothetical protein SFVA6_0010 [Shigella flexneri VA-6]
          Length = 335

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 118/331 (35%), Gaps = 19/331 (5%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+  +I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGSI---DLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG +       Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F+ Y         +      +  ++  L N + +           
Sbjct: 181 RFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTD----------R 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + R+T      +  L+         +  ++ ++  +  ++ +    F   + +  
Sbjct: 231 ARAELNWRITLVFTVFMMALM---VVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKS 287

Query: 328 KIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
              +     P L+++   +  + L ++   +
Sbjct: 288 NGGK-GKLDPTLWMWTVNLIYLALAIVLNLW 317


>gi|160885006|ref|ZP_02066009.1| hypothetical protein BACOVA_03003 [Bacteroides ovatus ATCC 8483]
 gi|156109356|gb|EDO11101.1| hypothetical protein BACOVA_03003 [Bacteroides ovatus ATCC 8483]
          Length = 632

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 85/205 (41%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T++
Sbjct: 5   KKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    + +     +     ELL +   G S + +++P+ F    L    F  +N++
Sbjct: 65  PVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  ++ +  L    +       + E +F+    D  +K++K N    +    ++ S   
Sbjct: 125 GPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYSMKD 184

Query: 182 QTH--KIYYAQSGSIDLDRQAIILN 204
                +I YA SG +++      L 
Sbjct: 185 GFEKARIIYADSGRLEMTADKQHLW 209



 Score = 45.4 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 46/129 (35%), Gaps = 4/129 (3%)

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                        +  +N++  L             +  +++E+HK++T  L  ++F  I
Sbjct: 330 SLTQKQKVLSSAVSRAENVANDLGFKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFI 389

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCIS 347
               A    ++R+     P+ +S+ +    +   +          + + + ++     ++
Sbjct: 390 G---APLGGIIRKGGLGMPVIVSVLVFIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLA 446

Query: 348 SIFLLMIKK 356
            + + +  K
Sbjct: 447 PLGVFLTYK 455


>gi|294807984|ref|ZP_06766761.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294444797|gb|EFG13487.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 638

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 85/205 (41%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T++
Sbjct: 11  KKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLV 70

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    + +     +     ELL +   G S + +++P+ F    L    F  +N++
Sbjct: 71  PVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVV 130

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  ++ +  L    +       + E +F+    D  +K++K N    +    ++ S   
Sbjct: 131 GPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYSMKD 190

Query: 182 QTH--KIYYAQSGSIDLDRQAIILN 204
                +I YA SG +++      L 
Sbjct: 191 GFEKARIIYADSGRLEMTADKQHLW 215



 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 46/129 (35%), Gaps = 4/129 (3%)

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                        +  +N++  L             +  +++E+HK++T  L  ++F  I
Sbjct: 336 SLTQKQKVISSAVSRAENVANDLGFKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFI 395

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCIS 347
               A    ++R+     P+ +S+ +    +   +          + + + ++     ++
Sbjct: 396 G---APLGGIIRKGGLGMPVIVSVLVFIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLA 452

Query: 348 SIFLLMIKK 356
            + + +  K
Sbjct: 453 PLGIFLTYK 461


>gi|299147702|ref|ZP_07040765.1| putative permease [Bacteroides sp. 3_1_23]
 gi|298513885|gb|EFI37771.1| putative permease [Bacteroides sp. 3_1_23]
          Length = 638

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 84/205 (40%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T++
Sbjct: 11  KKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLV 70

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    + +     +     ELL +   G S + +++P+ F    L    F  +N++
Sbjct: 71  PVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVV 130

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  ++ +  L    +       + E +F+    D  +K++K N    +    ++ +   
Sbjct: 131 GPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYNMKD 190

Query: 182 Q--THKIYYAQSGSIDLDRQAIILN 204
                 I YA SG +++      L 
Sbjct: 191 GFENAHIIYADSGRLEMTADKQHLW 215



 Score = 45.4 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 46/129 (35%), Gaps = 4/129 (3%)

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                        +  +N++  L             +  +++E+HK++T  L  ++F  I
Sbjct: 336 SLTQKQKVLSSAVSRAENVANDLGFKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFI 395

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCIS 347
               A    ++R+     P+ +S+ +    +   +          + + + ++     ++
Sbjct: 396 G---APLGGIIRKGGLGMPVIVSVLVFIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLA 452

Query: 348 SIFLLMIKK 356
            + + +  K
Sbjct: 453 PLGVFLTYK 461


>gi|206889444|ref|YP_002249741.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741382|gb|ACI20439.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 369

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 116/353 (32%), Gaps = 14/353 (3%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           ++   R+FL+    +  +  ++ ++++I+       S    ++   Y IP  +  + PF 
Sbjct: 11  IKDFVRTFLVLLFSMSCLLSIVGLIEKIDDFMPYKPSTTFFIEYGLYSIPRYIFYLIPFV 70

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             + +  + +   R+ E LI+  +G     L+KP L L I++SI  FI    ++P+    
Sbjct: 71  TLVTSLFIFSIGVRSREFLILSVSGGRLRGLLKPFLILGIVISIVGFIFGEFLQPEFTKK 130

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYY 188
           +  +  +       S  +E      D  +               + I   ++    K   
Sbjct: 131 LNFMIEELTQKGKSSIQKELFVRAKDGTVIKIGKFSQQQKKADEVKIFIIKNDALIKRID 190

Query: 189 AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS 248
           +Q   I+ D+    L +  V+       +   +      L+   A    I  K  +  ++
Sbjct: 191 SQEAEIEQDQWK--LKNSIVYDFVAGKVEKYDLMDYPLNLKISIAAFKDI-KKIEEFGIA 247

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA---------ADKRALV 299
            L+                  ++   RL+         ++ +                  
Sbjct: 248 ELIQKRKELKKVGLSNP-KIDTDISSRLSYNFVTFFMMILGMSLPLGAYEKFNFLFSKGK 306

Query: 300 RQRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                   I + + +    ++W    +   +  +    P +  ++  +   F+
Sbjct: 307 GGSAAGGIITVGIGLVITIIYWLVYSLFMFMGYSKILPPFISPWITPLIFGFV 359


>gi|309784106|ref|ZP_07678748.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|308928099|gb|EFP73564.1| conserved hypothetical protein [Shigella dysenteriae 1617]
          Length = 335

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 118/331 (35%), Gaps = 19/331 (5%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+  +I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAIILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGSI---DLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG +       Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F+ Y         +      +  ++  L N + +           
Sbjct: 181 RFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTD----------R 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + R+T      +  L+         +  ++ ++  +  ++ +    F   + +  
Sbjct: 231 ARAELNWRITLVFTVFMMALM---VVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKS 287

Query: 328 KIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
              +     P L+++   +  + L ++   +
Sbjct: 288 NGGK-GKLDPTLWMWTVNLIYLALAIVLNLW 317


>gi|253564060|ref|ZP_04841517.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251947836|gb|EES88118.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301161640|emb|CBW21180.1| putative permease [Bacteroides fragilis 638R]
          Length = 636

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 84/205 (40%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I++     F+ +    +FI  +  + + ++ +      +++L +   Y   +++
Sbjct: 5   KRLDIFIIKSFLLLFVGTFFICLFIFMMQFLWKYVDELVGKGLEMSVLAQFFFYSALSLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +     +     ELL +   G S + +++P++ L   +    F  +N+I
Sbjct: 65  PMSLPLAVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNVI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ ++ +  L    +       + E +F+   D   +K+ + +    +    I+     
Sbjct: 125 GPQAQAKLGTLLISMKQKSPEVDIPEGVFYDEIDGYNLKVQRKDRKTGMLYDVIIYDFSN 184

Query: 182 Q--THKIYYAQSGSIDLDRQAIILN 204
                +I  A SG +++      L 
Sbjct: 185 NFDNARIIVADSGRLEMTADKQHLY 209



 Score = 43.1 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 11/98 (11%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 260 YRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
                +  ++ E+H+++T  L  ++F  I    A    ++R+     P+ +S+      +
Sbjct: 361 QNDFSIRKHKIEWHRKITISLSCLLFFFIG---APLGGIIRKGGLGMPVIVSVLTFIIYY 417

Query: 320 WGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMIKK 356
              +          + + + +++    ++ +   +  K
Sbjct: 418 IIDNTGYKMARDGKWIVWMGMWMSSAILAPLGYFLTYK 455


>gi|323166625|gb|EFZ52384.1| hypothetical protein SS53G_3091 [Shigella sonnei 53G]
          Length = 335

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 117/331 (35%), Gaps = 19/331 (5%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+  +I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGSI---DLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG +       Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F+ Y                +  ++  L N + +           
Sbjct: 181 RFEGTALLRDFRITDFQDYQAIIGHQAVVLDPNDTDQMDMRTLWNTDTD----------R 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + R+T      +  L+         +  ++ ++  +  ++ +    F   + +  
Sbjct: 231 ARAELNWRITLVFTVFMMALM---VVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKS 287

Query: 328 KIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
              +     P L+++   +  + L ++   +
Sbjct: 288 NGGK-GKLDPTLWMWTVNLIYLALAIVLNLW 317


>gi|260450919|gb|ACX41341.1| permease YjgP/YjgQ family protein [Escherichia coli DH1]
          Length = 359

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 128/355 (36%), Gaps = 19/355 (5%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +R   +S L     ++ I +  ++++ +          N++L + G  +P +  ++ P  
Sbjct: 1   MRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLS 60

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     P     
Sbjct: 61  LFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRH 120

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKI 186
             ++ A+A+     + L +  F +  +   +   +    +  + +F+   R        +
Sbjct: 121 QDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSV 180

Query: 187 YYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
             A SG    +    Q + LN G     + + +D  I  F+ Y         +      +
Sbjct: 181 VVADSGHLTQLRDGSQVVTLNQGTRFEGTAMLRDFRITDFQDYQAIIGHQAVALDPNDTD 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++  L N +           +  R+E +  +T      +  L+         +  ++ 
Sbjct: 241 QMDMRTLWNTD----------TDRARAELNWCITLVFTVFMMALM---VVPLSVVNPRQG 287

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
           ++  +  ++ +    F   + +     +     P L+++   +  + L ++   +
Sbjct: 288 RVLSMLPAMLLYLLFFLIQTSLKSNGGK-GKLDPTLWMWTVNLIYLALAIVLNLW 341


>gi|237712765|ref|ZP_04543246.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409745|ref|ZP_06086283.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229447177|gb|EEO52968.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352398|gb|EEZ01500.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|295084616|emb|CBK66139.1| Predicted permeases [Bacteroides xylanisolvens XB1A]
          Length = 632

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 85/205 (41%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T++
Sbjct: 5   KKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    + +     +     ELL +   G S + +++P+ F    L    F  +N++
Sbjct: 65  PVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  ++ +  L    +       + E +F+    D  +K++K N    +    ++ S   
Sbjct: 125 GPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYSMKD 184

Query: 182 QTH--KIYYAQSGSIDLDRQAIILN 204
                +I YA SG +++      L 
Sbjct: 185 GFEKARIIYADSGRLEMTADKQHLW 209



 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 46/129 (35%), Gaps = 4/129 (3%)

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                        +  +N++  L             +  +++E+HK++T  L  ++F  I
Sbjct: 330 SLTQKQKVISSAVSRAENVANDLGFKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFI 389

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCIS 347
               A    ++R+     P+ +S+ +    +   +          + + + ++     ++
Sbjct: 390 G---APLGGIIRKGGLGMPVIVSVLVFIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLA 446

Query: 348 SIFLLMIKK 356
            + + +  K
Sbjct: 447 PLGIFLTYK 455


>gi|53711884|ref|YP_097876.1| hypothetical protein BF0593 [Bacteroides fragilis YCH46]
 gi|60680112|ref|YP_210256.1| putative permease [Bacteroides fragilis NCTC 9343]
 gi|52214749|dbj|BAD47342.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|60491546|emb|CAH06298.1| putative permease [Bacteroides fragilis NCTC 9343]
          Length = 636

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 84/205 (40%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I++     F+ +    +FI  +  + + ++ +      +++L +   Y   +++
Sbjct: 5   KRLDIFIIKSFLLLFVGTFFICLFIFMMQFLWKYVDELVGKGLEMSVLAQFFFYSALSLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +     +     ELL +   G S + +++P++ L   +    F  +N+I
Sbjct: 65  PMSLPLAVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNVI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ ++ +  L    +       + E +F+   D   +K+ + +    +    I+     
Sbjct: 125 GPQAQAKLGTLLISMKQKSPEVDIPEGVFYDEIDGYNLKVQRKDRKTGMLYDVIIYDFSN 184

Query: 182 Q--THKIYYAQSGSIDLDRQAIILN 204
                +I  A SG +++      L 
Sbjct: 185 NFDNARIIVADSGRLEMTADKQHLY 209



 Score = 43.1 bits (99), Expect = 0.067,   Method: Composition-based stats.
 Identities = 11/98 (11%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 260 YRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
                +  ++ E+H+++T  L  ++F  I    A    ++R+     P+ +S+      +
Sbjct: 361 QNDFSIRKHKIEWHRKITISLSCLLFFFIG---APLGGIIRKGGLGMPVIVSVLTFIIYY 417

Query: 320 WGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMIKK 356
              +          + + + +++    ++ +   +  K
Sbjct: 418 IIDNTGYKMARDGKWIVWMGMWMSSAILAPLGYFLTYK 455


>gi|265765250|ref|ZP_06093525.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263254634|gb|EEZ26068.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 636

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 84/205 (40%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I++     F+ +    +FI  +  + + ++ +      +++L +   Y   +++
Sbjct: 5   KRLDIFIIKSFLLLFVGTFFICLFIFMMQFLWKYVDELVGKGLEMSVLAQFFFYSALSLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +     +     ELL +   G S + +++P++ L   +    F  +N+I
Sbjct: 65  PMSLPLAVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNVI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ ++ +  L    +       + E +F+   D   +K+ + +    +    I+     
Sbjct: 125 GPQAQAKLGTLLISMKQKSPEVDIPEGVFYDEIDGYNLKVQRKDRKTGMLYDVIIYDFSN 184

Query: 182 Q--THKIYYAQSGSIDLDRQAIILN 204
                +I  A SG +++      L 
Sbjct: 185 NFDNARIIVADSGRLEMTADKQHLY 209



 Score = 43.1 bits (99), Expect = 0.069,   Method: Composition-based stats.
 Identities = 11/98 (11%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 260 YRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
                +  ++ E+H+++T  L  ++F  I    A    ++R+     P+ +S+      +
Sbjct: 361 QNDFSIRKHKIEWHRKITISLSCLLFFFIG---APLGGIIRKGGLGMPVIVSVLTFIIYY 417

Query: 320 WGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMIKK 356
              +          + + + +++    ++ +   +  K
Sbjct: 418 IIDNTGYKMARDGKWIVWMGMWMSSAILAPLGYFLTYK 455


>gi|312973921|ref|ZP_07788092.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|310331455|gb|EFP98711.1| conserved hypothetical protein [Escherichia coli 1827-70]
          Length = 335

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 119/331 (35%), Gaps = 19/331 (5%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+  +I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGSI---DLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG +       Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F++Y         +      +  ++  L N + +           
Sbjct: 181 RFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWNTDTD----------R 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + R+T      +  L+         +  ++ ++  +  ++ +    F   + +  
Sbjct: 231 ARAELNWRITLVFTVFMMALM---VVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKS 287

Query: 328 KIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
              +     P L+++   +  + L ++   +
Sbjct: 288 NGGK-GKLDPTLWMWTVNLIYLALAIVLNLW 317


>gi|315922632|ref|ZP_07918872.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696507|gb|EFS33342.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 632

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 84/205 (40%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T++
Sbjct: 5   KKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    + +     +     ELL +   G S + +++P+ F    L    F  +N++
Sbjct: 65  PVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  ++ +  L    +       + E +F+    D  +K++K N    +    ++ +   
Sbjct: 125 GPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYNMKD 184

Query: 182 Q--THKIYYAQSGSIDLDRQAIILN 204
                 I YA SG +++      L 
Sbjct: 185 GFENAHIIYADSGRLEMTADKQHLW 209



 Score = 45.4 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 46/129 (35%), Gaps = 4/129 (3%)

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                        +  +N++  L             +  +++E+HK++T  L  ++F  I
Sbjct: 330 SLTQKQKVLSSAVSRAENVANDLGFKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFI 389

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCIS 347
               A    ++R+     P+ +S+ +    +   +          + + + ++     ++
Sbjct: 390 G---APLGGIIRKGGLGMPVIVSVLVFIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLA 446

Query: 348 SIFLLMIKK 356
            + + +  K
Sbjct: 447 PLGVFLTYK 455


>gi|225848308|ref|YP_002728471.1| permease, YjgP/YjgQ family [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643577|gb|ACN98627.1| putative permease, YjgP/YjgQ family [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 355

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 118/364 (32%), Gaps = 12/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI   +   FL+       ++  +++++ +    S  +  N++L      +P  
Sbjct: 1   MKILDRYIYEKLTVYFLIVFPAFSLVSVFVELIEILRK--SKVQDFNLILIYILAKLPEN 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   + ++ E+  I   G S   +   ++  +I +S    ++  +
Sbjct: 59  FYYIVPISLIISAFVVANEIVKSREIYPILLNGISINYISTRIVIFSIFISFLQVLNLEV 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL---QGIFIVD 177
           + PK      +   K +               L  D    I     +      + I ++ 
Sbjct: 119 LMPKSNKVYVETYQKLKNQPLEDEKAIAYNLWLRLDEKNFIYFDFFDLEKKVGKEIVLIS 178

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +       +             +L   E+  KS     +S    K   +  +      
Sbjct: 179 MDENFLPTNRWEAESFKVESNSLTLLRGKEITVKSIEDVKVSKFDEKKVYVSVDPEKIKK 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           ++ +    +++ L        NY       + S+F+++L   + P I  + ++       
Sbjct: 239 LIKEKKPVSITQLYKVAKIAQNY-GYDASYFWSKFYQKLATVISPFILTVFAVGFIW--- 294

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              ++ K   +   LS     +            N  Y  I    +  +S  F LM K K
Sbjct: 295 ---RKNKFITLAGFLSTVLYWYGTSIVSAIASVGNIPYYFIFSFDVLFLSIGFYLMFKTK 351

Query: 358 YTKI 361
           + ++
Sbjct: 352 HPEL 355


>gi|169656684|ref|YP_001428997.2| putative permease YjgP/YjgQ family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|290954454|ref|ZP_06559075.1| putative permease YjgP/YjgQ family protein [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312116|ref|ZP_06802927.1| putative permease YjgP/YjgQ family protein [Francisella tularensis
           subsp. holarctica URFT1]
 gi|164551752|gb|ABU62041.2| putative permease YjgP/YjgQ family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 353

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 125/357 (35%), Gaps = 8/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI R +  SFL+  +    + ++   L +++  +++  +  +++  +   +P +
Sbjct: 3   LNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSNNTANVSNFELIIN-TLIQLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    
Sbjct: 62  LYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  +  +            +    +      + +     +       +Q   + + R 
Sbjct: 122 IAPILQRQVDTNMVTYNTHDLWFKTPDGFMNIANIEPTNGKAYGIRKFMVQDNKVREIRY 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            ++       S ++   R+ I          S   K I+I+   +  + +     S   +
Sbjct: 182 AESATYINDASANVFNIRKIIF-------PASDGQKHINIVTNMTNAVWSNPLPISVAKV 234

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              + N     +   +      +  ++   +F + + Q L  +I  L+++  +       
Sbjct: 235 ITINDNNYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGSTRSS 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +      +F +       I  I   P  +      +  +  +  L IK K
Sbjct: 295 TLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSK 351


>gi|253572213|ref|ZP_04849617.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298387973|ref|ZP_06997521.1| permease [Bacteroides sp. 1_1_14]
 gi|251838393|gb|EES66480.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298259239|gb|EFI02115.1| permease [Bacteroides sp. 1_1_14]
          Length = 632

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 84/205 (40%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T++
Sbjct: 5   KKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLDMSVIAQFFFYSALTLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    + +     +     ELL +   G S + +++P+ F    L    F  +N++
Sbjct: 65  PISLPLAILLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVAVSFYFQNVV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  ++ +  L    +       + E +F+    D  +KI+K N    +    ++ +   
Sbjct: 125 GPIAQTKLYTLIISMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMMYDVLIYNLKD 184

Query: 182 Q--THKIYYAQSGSIDLDRQAIILN 204
                 I YA SG +++      L 
Sbjct: 185 GFENAHIIYADSGRMEMTADKQHLW 209



 Score = 41.1 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
           NLS  +N            +  +  E+HK++T  L  ++F  I    A    ++R+    
Sbjct: 347 NLSSDINFKSYTMGSHDYSMRKHEIEWHKKITISLSCLLFFFIG---APLGGIIRKGGLG 403

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
            P+ +S+ + F +++      +K+ ++  ++  + ++
Sbjct: 404 MPVIVSVMV-FIIYYIIDNTGYKMARDGRWVVWMGVW 439


>gi|121730353|ref|ZP_01682711.1| bifunctional aspartokinase/homoserine dehydrogenase I (AKI-HDI)
           [Vibrio cholerae V52]
 gi|121627894|gb|EAX60475.1| bifunctional aspartokinase/homoserine dehydrogenase I (AKI-HDI)
           [Vibrio cholerae V52]
          Length = 233

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 81/230 (35%), Gaps = 5/230 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +  VS      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADVSDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +     L  +     +   L++  F R  D   +       N  L  +F+       
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
           +        +      +   RQ I L DG  +   P   D  I  F SY 
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYD 231


>gi|225849792|ref|YP_002730026.1| putative permease, YjgP/YjgQ family [Persephonella marina EX-H1]
 gi|225646703|gb|ACO04889.1| putative permease, YjgP/YjgQ family [Persephonella marina EX-H1]
          Length = 356

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 121/360 (33%), Gaps = 14/360 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+ + +    L+      F+A + ++++ +         +  L     Y +P  
Sbjct: 1   MRILDRYLYKKLTVYLLVVLPSFSFVAVLAELIEVLRKA--KQLDIYYLSLYILYQLPEK 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +    +   +  + E+  I   G S  +L   +    + LS    I+  +
Sbjct: 59  VYYILPISAVIAFILLAKDLIESKEIYPILLNGISLKSLATKLFIFPLFLSFLQIINLEL 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLE---ENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
           I P  +  ++++ +  +             N +  LD   Y+     + N       I  
Sbjct: 119 IMPTAKKEVEKVYSILKNRPPEEEKYLFAYNRWITLDSKSYMYFRFLDFNKREGKDLIFI 178

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D   + +   +     +  ++I++ +G++   S      +  +FK++         + 
Sbjct: 179 QFDENYNPVLRIEGNRFKIKGRSILIQNGKIIDLS-DIFSFNYRRFKTFDFPVAVDIKNL 237

Query: 238 IVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             L    + +S L L  +             Y S+F+ +L      +I  ++       R
Sbjct: 238 KKLVKVKKPVSILQLYRSAVIAEKFGYPAGYYWSKFYSKLATVFSALILSIVVFPFLWSR 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              +       +FI+ +     ++G ++I    E        +         + L  + K
Sbjct: 298 KKDK-------LFIAFASIIVYWYGTAFIASMAESGAVPYITVLFVDLVYLMVGLFFLSK 350


>gi|330890526|gb|EGH23187.1| hypothetical protein PSYMO_17673 [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 231

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 68/218 (31%), Gaps = 2/218 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L 
Sbjct: 2   IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++  TG S+  L+   +  A L+ + +      + 
Sbjct: 62  VILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P+  +    L  K      F  L    F   R    +          + L G+FI + R 
Sbjct: 122 PQGATQFSLLINKQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKRM 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI 218
           +         +  +       +  +G            
Sbjct: 182 SGDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRY 219


>gi|293369978|ref|ZP_06616545.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
 gi|292634896|gb|EFF53418.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
          Length = 638

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 85/205 (41%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T++
Sbjct: 11  KKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLV 70

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    + +     +     ELL +   G S + +++P+ F    L    F  +N++
Sbjct: 71  PVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLIGVSFYFQNVV 130

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  ++ +  L    +       + E +F+    D  +K++K N    +    ++ S   
Sbjct: 131 GPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYSMKD 190

Query: 182 QTH--KIYYAQSGSIDLDRQAIILN 204
                +I YA SG +++      L 
Sbjct: 191 GFEKARIIYADSGRLEMTADKQHLW 215



 Score = 45.8 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 46/129 (35%), Gaps = 4/129 (3%)

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                        +  +N++  L             +  +++E+HK++T  L  ++F  I
Sbjct: 336 SLTQKQKVISSAVSRAENVANDLGFKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFI 395

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCIS 347
               A    ++R+     P+ +S+ +    +   +          + + + ++     ++
Sbjct: 396 G---APLGGIIRKGGLGMPVIVSVLVFIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLA 452

Query: 348 SIFLLMIKK 356
            + + +  K
Sbjct: 453 PLGIFLTYK 461


>gi|298483137|ref|ZP_07001317.1| permease [Bacteroides sp. D22]
 gi|298270654|gb|EFI12235.1| permease [Bacteroides sp. D22]
          Length = 632

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 85/205 (41%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T++
Sbjct: 5   KKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    + +     +     ELL +   G S + +++P+ F    L    F  +N++
Sbjct: 65  PVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLIGVSFYFQNVV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  ++ +  L    +       + E +F+    D  +K++K N    +    ++ S   
Sbjct: 125 GPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYSMKD 184

Query: 182 QTH--KIYYAQSGSIDLDRQAIILN 204
                +I YA SG +++      L 
Sbjct: 185 GFEKARIIYADSGRLEMTADKQHLW 209



 Score = 45.8 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 46/129 (35%), Gaps = 4/129 (3%)

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                        +  +N++  L             +  +++E+HK++T  L  ++F  I
Sbjct: 330 SLTQKQKVISSAVSRAENVANDLGFKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFI 389

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCIS 347
               A    ++R+     P+ +S+ +    +   +          + + + ++     ++
Sbjct: 390 G---APLGGIIRKGGLGMPVIVSVLVFIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLA 446

Query: 348 SIFLLMIKK 356
            + + +  K
Sbjct: 447 PLGIFLTYK 455


>gi|57167826|ref|ZP_00366966.1| conserved hypothetical integral membrane protein, putative
           [Campylobacter coli RM2228]
 gi|57020948|gb|EAL57612.1| conserved hypothetical integral membrane protein, putative
           [Campylobacter coli RM2228]
          Length = 341

 Score = 68.5 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 110/345 (31%), Gaps = 12/345 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L     + L     +  I  ++  +Q   L SS   +   LLK+ G+++P +
Sbjct: 1   MKLALRYVLNQFLSTNLSIFFVLFTIVSMVFFIQLAKLTSSIEINFADLLKLYGFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  ++R  E +++   G S   L K  L +A L+S  + I   +
Sbjct: 61  LIFTLPIAFFIALTLALFRLSRENESIVLFTLGFSPKILAKFFLKIAALVSALMLIIALV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P             +  + F+Y       R  + +     + +       ++      
Sbjct: 121 MIPIVFELQDNFVNFKKTQVKFNYKTGEFGQRFLEWMIFIEKQESDRYENIIMYHPKRNI 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               ++  A+  +   +  +           +  +     +      +     N   +  
Sbjct: 181 EDKEQLIIAKEATAQRNEDSFAFKLSNGKMYNFENGQTLFIGNFDKLIVNTQFNDQNLQT 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K   +  + L                    EF   +T  LFP+   L ++          
Sbjct: 241 KKFYEYWNDLNTNPKRAK------------EFVIYVTIALFPLASTLFALSFGIVTYRYE 288

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           +      +F  +++ FG+   FS          + +  +   +  
Sbjct: 289 KGFIYFGMFGVIAVYFGLLSSFSQPPILACIGIFALSFIASIVCF 333


>gi|297517382|ref|ZP_06935768.1| hypothetical protein EcolOP_07050 [Escherichia coli OP50]
          Length = 340

 Score = 68.1 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 135/349 (38%), Gaps = 18/349 (5%)

Query: 17  LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNV 76
           ++   F++FI       + +   ++ T +L+++L I  Y +   L M+ P    +     
Sbjct: 1   MIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVGVT 60

Query: 77  LTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKA 136
           L  M  ++E+  I   G S   L K VL+LAI LSIF+ +      P   + I QL  ++
Sbjct: 61  LGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQQS 120

Query: 137 QLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL 196
           Q  L    L    F   D+   I     + +N      ++ +      +I+ A+S  +  
Sbjct: 121 QSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFRARSVDVVD 180

Query: 197 ---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNP 253
              ++  ++L++G  +      +D +   +++  L     + S  V +          + 
Sbjct: 181 PSPEKPTVMLHNGTAYLIDHQGRDDNEQIYRNLQLHLNPLDQSPNVKRKAKSVTELARSV 240

Query: 254 NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLS 313
            P +            +E   R ++ L  ++     ++A     +  ++ +   +     
Sbjct: 241 FPAD-----------HAELQWRQSRGLTALLMA---LLAISLSRVKPRQGRFSTLLPLTL 286

Query: 314 ISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKKKYTKI 361
           +   +F+G       +       IP L+L    +    L+++ + ++ +
Sbjct: 287 LFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVARDFSLL 335


>gi|153820564|ref|ZP_01973231.1| conserved permease [Vibrio cholerae NCTC 8457]
 gi|126508893|gb|EAZ71487.1| conserved permease [Vibrio cholerae NCTC 8457]
          Length = 236

 Score = 68.1 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 75/199 (37%), Gaps = 1/199 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  + +       +           +  D + +I I+K    +           + 
Sbjct: 123 APQAQ-KMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAKVENEHLYGLNLWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQA 200
           +   + +++      + + 
Sbjct: 182 KLSTVIFSEQVDYVANNEW 200


>gi|56708377|ref|YP_170273.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89256770|ref|YP_514132.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|110670847|ref|YP_667404.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115315161|ref|YP_763884.1| hypothetical protein FTH_1435 [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010911|ref|ZP_02275842.1| hypothetical protein Ftulh_09398 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|187931970|ref|YP_001891955.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224457507|ref|ZP_03665980.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371000|ref|ZP_04987003.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875200|ref|ZP_05247910.1| permease yjgP/yjgQ family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604869|emb|CAG45953.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89144601|emb|CAJ79920.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|110321180|emb|CAL09336.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115130060|gb|ABI83247.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|151569241|gb|EDN34895.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|187712879|gb|ACD31176.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254841199|gb|EET19635.1| permease yjgP/yjgQ family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159996|gb|ADA79387.1| hypothetical protein NE061598_09765 [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 353

 Score = 68.1 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 124/357 (34%), Gaps = 8/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI R +  SFL+  +    + ++   L +++  +++  +  +++  +   +P +
Sbjct: 3   LNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSNNTANVSNFELIIN-TLIQLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    
Sbjct: 62  LYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  +  +            +    +      + +     +       +Q   + + R 
Sbjct: 122 IAPILQRQVDTNMVTYNTHDLWFKTPDGFMNIANIEPTNGKAYGIRKFMVQDNKVREIRY 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            ++       S ++   R+ I          S   K I I+   +  + +     S   +
Sbjct: 182 AESATYINDASANVFNIRKIIF-------PASDGQKHIDIVTNMTNAVWSNPLPISVAKV 234

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              + N     +   +      +  ++   +F + + Q L  +I  L+++  +       
Sbjct: 235 ITINDNNYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGSTRSS 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +      +F +       I  I   P  +      +  +  +  L IK K
Sbjct: 295 TLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSK 351


>gi|305432149|ref|ZP_07401315.1| conserved hypothetical integral membrane protein [Campylobacter
           coli JV20]
 gi|304444814|gb|EFM37461.1| conserved hypothetical integral membrane protein [Campylobacter
           coli JV20]
          Length = 341

 Score = 68.1 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 110/345 (31%), Gaps = 12/345 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L     + L     +  I  ++  +Q   L SS   +   LLK+ G+++P +
Sbjct: 1   MKLALRYVLNQFLSTNLSIFFVLFTIVSMVFFIQLAKLTSSIEINFVDLLKLYGFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  ++R  E +++   G S   L K  L +A L+S  + I   +
Sbjct: 61  LIFTLPIAFFIALTLALFRLSRENESIVLFTLGFSPKILAKFFLKIAALVSALMLIIALV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P             +  + F+Y       R  + +     + +       ++      
Sbjct: 121 MIPIVFELQDNFVNFKKTQVKFNYKTGEFGQRFLEWMIFIEKQESDRYENIIMYHPKRNI 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               ++  A+  +   +  +           +  +     +      +     N   +  
Sbjct: 181 EDKEQLIIAKEATAQRNEDSFAFKLSNGKMYNFENGQTLFIGNFDKLIVNTQFNDQNLQT 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K   +  + L                    EF   +T  LFP+   L ++          
Sbjct: 241 KKFYEYWNDLNTNPKRAK------------EFVIYVTIALFPLASTLFALSFGIVTYRYE 288

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           +      +F  +++ FG+   FS          + +  +   +  
Sbjct: 289 KGFIYFGMFGVIAVYFGLLSSFSQPPILACIGIFALSFIASIVCF 333


>gi|257487385|ref|ZP_05641426.1| hypothetical protein PsyrptA_29198 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 205

 Score = 68.1 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 64/199 (32%), Gaps = 1/199 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +  +   +  +  + S T +L   L       P  
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDI-SDTYTLADALSYVMLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++  ++EL I+   G S   ++  V+   +LL +   +    
Sbjct: 60  VYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ +         L+ R  D+     +       L          
Sbjct: 120 VAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGDEFIHINTVQPNGLMLGVTRYRFDDQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQ 199
                  +A+  +   D  
Sbjct: 180 RHMLTSSFAKEANFKTDYW 198


>gi|254457924|ref|ZP_05071351.1| permease YjgP/YjgQ [Campylobacterales bacterium GD 1]
 gi|207085317|gb|EDZ62602.1| permease YjgP/YjgQ [Campylobacterales bacterium GD 1]
          Length = 339

 Score = 68.1 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 128/358 (35%), Gaps = 19/358 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+  +   FL   + +  IA VI +++     +    +L  ++K+  +++P +
Sbjct: 1   MDRLRKYIINNLYMIFLSMFMPLFAIASVIFMIKLATYTAVIQLTLWDMVKLYLFVLPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  ++ + E++++   G     +IK +   A LLS  L  +  +
Sbjct: 61  LFYTLPLTFFIAATLSLFRLSTDNEMVVLFALGIHPKFIIKTLFKPAALLSALLMFNFLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +      +  +    F+           D L       +  N      I+ +++
Sbjct: 121 LFPHATTLSSNFVSYKKSEAKFNLSASEFGHSFGDWLLYI--GKDNENETYSDVILFNKN 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   I  A+   I  D   + L   E    S   ++ S + F +  +         +  
Sbjct: 179 KKEEIIISAKRAEIINDAGILRLKLIEGEGYSYSKEEFSQIDFDTMYINDTMRTDLAVYR 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              +  LS     +                  H  +T  L  + F LIS+       +V 
Sbjct: 239 TPLEYWLSNDRKESKT----------------HMMITDTLLSL-FPLISLFLVVSIGVVH 281

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R +   I++ L +   +++G +  + K         ++  +L     I+   I +++
Sbjct: 282 VRHQKGRIYLYLFLGVLLYYGATLGLQKSLVYYTIPTVVITWLIVTYIIYKKNIVERF 339


>gi|254372627|ref|ZP_04988116.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570354|gb|EDN36008.1| permease YjgP/YjgQ family protein [Francisella novicida GA99-3549]
          Length = 353

 Score = 68.1 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 124/357 (34%), Gaps = 8/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI R +  SFL+  +    + ++   L +++  +++  +  +++  +   +P +
Sbjct: 3   LNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSNNTANVSNFELIIN-TLIQLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    
Sbjct: 62  LYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  +  +            +    +      + +     +       +Q   + + R 
Sbjct: 122 IAPILQRQVDTNMVTYNTHDLWFKTPDGFMNISNIEPTQGKAYGIRKFMVQDNKVREIRY 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            ++       S ++   R+ I          S   K I I+   +  + +     S   +
Sbjct: 182 AESATYINDASANVFNIRKIIF-------PASDGQKHIDIVTNMTNAVWSNPIPISVAKV 234

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              + N     +   +      +  ++   +F + + Q L  +I  L+++  +       
Sbjct: 235 ITINDNDYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGSTRSS 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +      +F +       I  I   P  +      +  +  +  L IK K
Sbjct: 295 TLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSK 351


>gi|315617675|gb|EFU98281.1| conserved hypothetical protein [Escherichia coli 3431]
          Length = 335

 Score = 67.7 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 118/331 (35%), Gaps = 19/331 (5%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +     S    N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDSDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+  +I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGSI---DLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG +       Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSNFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F+ Y         +      +  ++  L N +             
Sbjct: 181 RFEGTALLRDFRITDFQDYQAIIGHHAVALDPNDTDQMDMRTLWNTD----------TTR 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + R+T      +  L+         +  ++ ++  +  ++ +    F   + +  
Sbjct: 231 ARAELNWRITLIFTVFMMALM---VVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKS 287

Query: 328 KIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
              +     P L+++   +  + L ++   +
Sbjct: 288 NGGK-GKLDPTLWMWTVNLIYLALAIVLNLW 317


>gi|291327104|ref|ZP_06127004.2| inner membrane protein YjgP [Providencia rettgeri DSM 1131]
 gi|291311564|gb|EFE52017.1| inner membrane protein YjgP [Providencia rettgeri DSM 1131]
          Length = 343

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 121/336 (36%), Gaps = 19/336 (5%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           + I +  + +  +          N++L + G  +P +  ++ P    +      + +   
Sbjct: 1   MLIFFSQKSIDILGAAVQGNIPSNLVLPLLGLGVPEMAQLILPLSLFLGLLMTYSKLYTE 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
           +E+ ++   G  +  L+K  L LA++ ++    +   + P      +Q+ A A+     +
Sbjct: 61  SEITVMHACGLGKSVLVKAALVLAVITAMVAVANITWMLPWSSQYQEQVLADAKANPGLA 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ--THKIYYAQSGSIDLDRQAI 201
            + E  F    D  Y+        +  + +F+   R        +  A SG +  D    
Sbjct: 121 AMVEGQFKTTKDGNYVLYIGDVKGSNFKNVFLAQLRAANEQRPSVVVADSGYMKEDPDGR 180

Query: 202 ---ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNP 258
              +LN+G  +  + + +D  I  F +Y    +   + T   +   +N+  L +      
Sbjct: 181 QVVVLNEGTRYEGTALLRDFRITDFVNYQAIVDHQTAETRSDRVEQKNMLQLWSE----- 235

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
                      +EFH RLT     V+  L+         +  ++ ++  +  ++ +    
Sbjct: 236 -----NTPEVNAEFHWRLTIVFSVVVMALM---VVPLSEVNPRQGRVLSMLPAMLLYLIF 287

Query: 319 FWGFSYIIHKIEQNPYYI-PILYLFLFCISSIFLLM 353
           F   S + +  ++        ++        + +++
Sbjct: 288 FLLQSTLRNSADKGDLDPRYTMWAVNVGYLILAIVL 323


>gi|260891451|ref|ZP_05902714.1| hypothetical protein GCWU000323_02662 [Leptotrichia hofstadii
           F0254]
 gi|260858834|gb|EEX73334.1| hypothetical protein GCWU000323_02662 [Leptotrichia hofstadii
           F0254]
          Length = 222

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 59/206 (28%), Gaps = 9/206 (4%)

Query: 159 IKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI 218
             I + N        F++ ++           + +   D   I L   + +         
Sbjct: 17  FYIDEVNNEKATAKNFLIINKRGNNPYPIVFLAENAKFDPGIIRLKKVKGYAFDKDGNSQ 76

Query: 219 SIMKFKSYTLQTES---ANSSTIVLKANDQNLSFLLNPNPNNPN--YRPELLETYRSEFH 273
               ++   +   +    N   +     + N+  L      N       E     + E +
Sbjct: 77  VSALYQEQEIPITTFFRENKKEVKKSRKEMNIKELNEFYKQNIKNPEEKETALKAQVEIY 136

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
           +RL           +  +        R+  +     ISL + FG     SY    + +N 
Sbjct: 137 QRLIGPFAS---TFLCWLGVLLSVGHRRSGRGISFGISLIVIFGYIGMASYAKIMVLKNN 193

Query: 334 YYI-PILYLFLFCISSIFLLMIKKKY 358
                 +++  F +  + +    KKY
Sbjct: 194 VPANIAMWVPNFVLFIMCIYFSIKKY 219


>gi|313203466|ref|YP_004042123.1| permease yjgp/yjgq family protein [Paludibacter propionicigenes
           WB4]
 gi|312442782|gb|ADQ79138.1| permease YjgP/YjgQ family protein [Paludibacter propionicigenes
           WB4]
          Length = 493

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 76/202 (37%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI +     FLM+ L  +FI  +  + + ++ +       ++L +   Y I +V+
Sbjct: 5   KKIDSYIFKRFITQFLMTFLICIFILLMQFLWKHVSELIGKGVGWSVLAEFFIYAIFSVV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +     ++  N EL  +   G S   +I+P++     + +  F   N +
Sbjct: 65  PMALPLAILLASLMTFGNLGENFELTAMKAAGISLFRIIRPLIIFISFVCVGAFFFSNYV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  ++ +  L    +       +    F+    ++ I +     +     +    S   
Sbjct: 125 LPVAQTKLYTLVISLKQKSPELDIPTGEFYSGIPNVQIYVKDKKDHILKNVMIYNFSGGF 184

Query: 182 QTHKIYYAQSGSIDLDRQAIIL 203
           +  ++  A SG +        +
Sbjct: 185 ENAEVTVADSGKVQFTEDKKYI 206



 Score = 43.1 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 4/111 (3%)

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
           +S  +  N      +   +  +  E H++ T     +IF  I    A   A++R+     
Sbjct: 348 MSETVEYNKTMIGSQVTYITKHEIERHRKFTLSFACLIFFFIG---APLGAIIRKGGLGM 404

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIP-ILYLFLFCISSIFLLMIKK 356
           P+ IS+ +    +   +     +++  +     ++L  F +  I + +  K
Sbjct: 405 PVVISVIMFIIYYIIDNTGYKMVKEGLWLSYQGMWLSSFVLLPIGIFLTYK 455


>gi|260642684|ref|ZP_05416897.2| putative permease [Bacteroides finegoldii DSM 17565]
 gi|260621031|gb|EEX43902.1| putative permease [Bacteroides finegoldii DSM 17565]
          Length = 632

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 85/205 (41%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T++
Sbjct: 5   KKLDIFIVKSFFMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    + +     +     ELL +   G S + +++P++F    L    F  +N++
Sbjct: 65  PVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLVFFVCGLVGVSFYFQNVV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  ++ +  L    +       + E +F+    D  +KI+K +    +    ++ +   
Sbjct: 125 GPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIPDYNLKIAKKDRKTGMLYDVLIYNLKD 184

Query: 182 Q--THKIYYAQSGSIDLDRQAIILN 204
                 I YA SG +++      L 
Sbjct: 185 GFENAHIIYADSGRLEMTADKQHLW 209



 Score = 45.4 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 46/129 (35%), Gaps = 4/129 (3%)

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                        +  +N++  L             +  +++E+HK++T  L  ++F  I
Sbjct: 330 PLTQKQKVISAALSRAENMASDLTFKSYTMESNDYSIRKHKTEWHKKITISLSCLLFFFI 389

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCIS 347
               A    ++R+     P+ +S+ +    +   +          + + + ++     ++
Sbjct: 390 G---APLGGIIRKGGLGMPVIVSVLVFIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLA 446

Query: 348 SIFLLMIKK 356
            + + +  K
Sbjct: 447 PLGIFLTYK 455


>gi|222110917|ref|YP_002553181.1| permease yjgp/yjgq family protein [Acidovorax ebreus TPSY]
 gi|221730361|gb|ACM33181.1| permease YjgP/YjgQ family protein [Acidovorax ebreus TPSY]
          Length = 363

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/341 (12%), Positives = 117/341 (34%), Gaps = 16/341 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + R+F  + + +V +   + +++ +   S  + + + ++ + G+ +   LP
Sbjct: 2   LFDSSIRKELARTFGATLVVLVTVVMTMMLIRTLGQASRGSVNPSDVMLVMGFTVLGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I  + G   ++L+ P+   +  + + +     ++ 
Sbjct: 62  TILSLSLFVTVVGALSRMYRDSEMVIWFSAGRGLMSLLAPLFRFSWPVMLTIAALSLVVW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDT 181
           P     I++L  + +       +    F    +      I K  P+        + + + 
Sbjct: 122 PWANRQIQELKTQYEQRSDVDRIAPGEFQESSNGSRVFFIDKDAPDANSASNVFIATNEP 181

Query: 182 QTHKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
               +  AQS    I    +  +L++G+          + + +F  Y       + +   
Sbjct: 182 NRETVTSAQSARLEIRNGERMALLSNGQRLETLRDKPGLRVSEFAEYGTLVGGGSQNDPE 241

Query: 240 L-KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                 ++   L++          +    +++E   R+   L  + F    +  A     
Sbjct: 242 AASIKTRDTWELVS----------DPQPRHQAELGWRIGMALAALNFV--VLGLAVAVVN 289

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
            R  +    +F   +                      +P +
Sbjct: 290 PRAGRSTSLVFALFAFVVYYNLMTVGQTWIGVGRLGLLPFM 330


>gi|170766592|ref|ZP_02901045.1| putative permease [Escherichia albertii TW07627]
 gi|170124030|gb|EDS92961.1| putative permease [Escherichia albertii TW07627]
          Length = 335

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 117/331 (35%), Gaps = 19/331 (5%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+  +I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGSI---DLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG +       Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSNFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F+ Y         +      +  ++  L N +             
Sbjct: 181 RFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTD----------TTR 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + R+T      +  L+         +  ++ ++  +  ++ +    F   + +  
Sbjct: 231 ARAELNWRITLIFNVFMMALM---VVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKS 287

Query: 328 KIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
              +     P L+++   +  + L ++   +
Sbjct: 288 NGGK-GKLDPTLWMWTVNLIYLVLAIVLNLW 317


>gi|121594280|ref|YP_986176.1| permease [Acidovorax sp. JS42]
 gi|120606360|gb|ABM42100.1| permease YjgP/YjgQ family protein [Acidovorax sp. JS42]
          Length = 363

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/341 (12%), Positives = 117/341 (34%), Gaps = 16/341 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + R+F  + + +V +   + +++ +   S  + + + ++ + G+ +   LP
Sbjct: 2   LFDSSIRKELARTFGATLVVLVTVVMTMMLIRTLGQASRGSVNPSDVMLVMGFTVLGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I  + G   ++L+ P+   +  + + +     ++ 
Sbjct: 62  TILSLSLFVTVVGALSRMYRDSEMVIWFSAGRGLMSLLAPLFRFSWPVMLTIAALSLVVW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDT 181
           P     I++L  + +       +    F    +      I K  P+        + + + 
Sbjct: 122 PWANRQIQELKTQYEQRSDVDRIAPGEFQESSNGSRVFFIDKDAPDANSASNVFIATNEP 181

Query: 182 QTHKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
               +  AQS    I    +  +L++G+          + + +F  Y       + +   
Sbjct: 182 NRETVTSAQSARLEIRNGERMALLSNGQRLETLRDKPGLRVSEFAEYGTLVGGGSQNDPE 241

Query: 240 L-KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                 ++   L++          +    +++E   R+   L  + F    +  A     
Sbjct: 242 AASIKTRDTWELVS----------DPQPRHQAELGWRIGMALAALNFV--VLGLAVAVVN 289

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
            R  +    +F   +                      +P +
Sbjct: 290 PRAGRSTSLVFALFAFVVYYNLMTVGQTWIGVGRLGLLPFM 330


>gi|262382624|ref|ZP_06075761.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295502|gb|EEY83433.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 658

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 75/183 (40%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    ++L+     FLM+    +FI  +  + + I+ +      + +L ++  Y    ++
Sbjct: 5   KRLYTFMLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +     ++    ELL + + G S I +++P++   + +S+  F  +N +
Sbjct: 65  PMALPLAILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNNV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +  +  L    +       + E  F++      + + K +P + L    ++     
Sbjct: 125 MPVVQVKLYTLLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYSE 184

Query: 182 QTH 184
             +
Sbjct: 185 GFN 187



 Score = 44.6 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
             +  + +E+HK+ T     ++F  I    A   A++R+     P+ IS+ +    +   
Sbjct: 381 YKVRRHLTEWHKKFTVSFACIMFFFIG---APLGAIIRKGGLGVPVVISVILFIFYYIID 437

Query: 323 SYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +          +     ++L    ++ + + +  K
Sbjct: 438 NMGFKMARDGVWDAWEGMWLSSVVLTPMGIFLTYK 472


>gi|225851251|ref|YP_002731485.1| putative permease, YjgP/YjgQ family [Persephonella marina EX-H1]
 gi|225646479|gb|ACO04665.1| putative permease, YjgP/YjgQ family [Persephonella marina EX-H1]
          Length = 337

 Score = 67.3 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 112/356 (31%), Gaps = 19/356 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI + I ++FL+       +    Q+L   +++      +    K+   +  + 
Sbjct: 1   MKILYRYITKNILKNFLVLIAVFSIVIVSSQLLHLPSVM--YHADITNFFKLLFLMNLSF 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L     F F + T  +  +M  N E+  + + G ++  LIKP++ +++++     I    
Sbjct: 59  LKFQLLFAFFLSTALLGFNMRENREIYAVYSAGITKGQLIKPLVVISLIIFTVSLIVSMF 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P       +             ++E  FF+L D++ I   K   N         +   
Sbjct: 119 VVPYANRERAKFITLNIKRYFLDAVQEKNFFQLSDNVTIYTEKKEGNR------FENVFI 172

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +     +     D     L  G +        +I   +   + +  E     +I  
Sbjct: 173 YNRERGQTISAKEAFFDTTTFFLKKGYIQIPDEKGFNILRFESYRFNIDVEYLKKYSIED 232

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             N   L               +      S    R+   LFP  F  I ++        +
Sbjct: 233 YRNKDLLM--------IIKKSKKDKNRALSVLTDRI---LFPFPFLFIGVLGFMVGIKTQ 281

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           + K        L     +   F +I    +         ++ L   SSI     +K
Sbjct: 282 KGKDSVIATTVLISIVYLVLNFYFIKLIGKGKIDPSVYAFVLLAYFSSITYYFYRK 337


>gi|315638467|ref|ZP_07893644.1| conserved hypothetical integral membrane protein [Campylobacter
           upsaliensis JV21]
 gi|315481458|gb|EFU72085.1| conserved hypothetical integral membrane protein [Campylobacter
           upsaliensis JV21]
          Length = 341

 Score = 67.3 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 112/345 (32%), Gaps = 12/345 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL     + L   L +  I  ++  +Q  NL SS   S   L K+ G+++P +
Sbjct: 1   MKLIFKYILNQFLGTHLSIFLVLFGIVSMVFFIQIANLTSSIEISFLDLFKLYGFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  +++  E ++    G + + + +  L +A  LS+ +     +
Sbjct: 61  LIFTLPLAFFVALTLALYRLSKENESVVFFTLGFTPLKMAQFFLKIATFLSVLMLGVALV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      K      +  + F+Y       +  D +     +         ++   S D
Sbjct: 121 MIPIVYQLQKNFVDYKKTQIKFNYKTGEFGQKFLDWMIFIQDEKEGGYENIIMYHPKSTD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               ++  A+  +++   +            +  + +   +  +   L   +  S  +  
Sbjct: 181 NLKEQLIIAKEANLERSNEGFAFRLSAGKMYNFDADEALFIG-EFENLVVNTKFSDNLGQ 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                     +N N +              EF   +   LFP+   L ++          
Sbjct: 240 TKAFYEYWDDINTNADKAR-----------EFVMYVCISLFPLASTLFALSFGIVTYRYE 288

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           +      +F  +++ FG+          +    +        +  
Sbjct: 289 KGFIYLGMFGVIAVYFGLLSSLYKPPLLMSFLIFSFAFAASIICF 333


>gi|209363910|ref|YP_001424259.2| hypothetical membrane spanning protein [Coxiella burnetii Dugway
           5J108-111]
 gi|207081843|gb|ABS76872.2| hypothetical membrane spanning protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 372

 Score = 67.3 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 120/342 (35%), Gaps = 21/342 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I  + L + L ++ I    Q +  +N  ++   ++  +++I    +P +L 
Sbjct: 4   IVFRYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAAAGKITVKAVMEIMSLQVPLLLG 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +     L  M  + E++I+   G SR  ++  ++ LA  + + +      +E
Sbjct: 64  YLLPLGLFLGGLFALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSVE 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV------ 176
           PK +    ++   A    +   +    F  L  +  +  +    ++  + + +       
Sbjct: 124 PKMQWYRVKILKDAVATASLEKIVPGRFQPLSSNGQVFYAGGVNDHHQKMLNVFLAQSET 183

Query: 177 --DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               +         A   S       I+  +G  +   P      +MKF  Y ++  S  
Sbjct: 184 AGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLTSP- 242

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +  I  + +    S L + +  +            +E   R+   L   +F L+ +    
Sbjct: 243 AMDITGRVDAMPTSKLWHLHSKDLKAA--------AELQWRIAMPLSVWLFALLIVSL-- 292

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                 ++ K   +  ++ I  G +  F ++     ++    
Sbjct: 293 -SEANPRKGKFAQMLPAVLIYIG-YANFMFLGRTWIEDGVIS 332


>gi|183179747|ref|ZP_02957958.1| inner membrane protein YjgQ [Vibrio cholerae MZO-3]
 gi|183013158|gb|EDT88458.1| inner membrane protein YjgQ [Vibrio cholerae MZO-3]
          Length = 228

 Score = 67.3 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/206 (9%), Positives = 63/206 (30%), Gaps = 1/206 (0%)

Query: 151 FRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHR 210
           +  D + +I I+K                + +   + +++      + + ++ +      
Sbjct: 23  WARDANDFIFIAKVENEQLYGLNLWRFDENKKLSTVIFSEQVDYVANNEWLMKDAVLTRL 82

Query: 211 KSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRS 270
            + I      +    +         + + +K  + +L+ L +   +      +    Y  
Sbjct: 83  VNDIEISKESLPEYRWRTSLAPDKLAVVTVKPEELSLTGL-SDYVHYLKASEQDSSRYEL 141

Query: 271 EFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE 330
              +++TQ +   +  L+++                   +    +F +   F   +  + 
Sbjct: 142 ALWRKVTQPISIAVMMLMALSFIFGPLRSVTMGARILSGVIAGFTFYISSEFFGPLSLVY 201

Query: 331 QNPYYIPILYLFLFCISSIFLLMIKK 356
             P     L   L  ++    L+ +K
Sbjct: 202 GLPPLFGALAPSLVFLAIALGLLGRK 227


>gi|118497254|ref|YP_898304.1| membrane protein of unknown function [Francisella tularensis subsp.
           novicida U112]
 gi|118423160|gb|ABK89550.1| conserved membrane protein of unknown function [Francisella
           novicida U112]
          Length = 353

 Score = 67.3 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 124/357 (34%), Gaps = 8/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI R +  SFL+  +    + ++   L +++  +++  +  +++  +   +P +
Sbjct: 3   LNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSNNTANVSNFELIIN-TLIQLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    
Sbjct: 62  LYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  +  +            +    +      + +     +       +Q   + + R 
Sbjct: 122 IAPILQRQVDTNMVTYNTHDLWFKTPDGFMNIANIEPTKGKAYGIRKFMVQDNKVREIRY 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            ++       S ++   R+ I          S   K I I+   +  + +     S   +
Sbjct: 182 AESATYINDASANVFNIRKIIF-------PASDGQKHIDIVTNMTNAVWSNPIPISVAKV 234

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              + N     +   +      +  ++   +F + + Q L  +I  L+++  +       
Sbjct: 235 ITINDNDYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGSTRSS 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +      +F +       I  I   P  +      +  +  +  L IK K
Sbjct: 295 TLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSK 351


>gi|301308106|ref|ZP_07214060.1| putative permease [Bacteroides sp. 20_3]
 gi|300833576|gb|EFK64192.1| putative permease [Bacteroides sp. 20_3]
          Length = 651

 Score = 67.3 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 75/183 (40%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    ++L+     FLM+    +FI  +  + + I+ +      + +L ++  Y    ++
Sbjct: 5   KRLYTFMLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +     ++    ELL + + G S I +++P++   + +S+  F  +N +
Sbjct: 65  PMALPLAILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNNV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +  +  L    +       + E  F++      + + K +P + L    ++     
Sbjct: 125 MPVVQVKLYTLLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYSE 184

Query: 182 QTH 184
             +
Sbjct: 185 GFN 187



 Score = 44.2 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
             +  + +E+HK+ T     ++F  I    A   A++R+     P+ IS+ +    +   
Sbjct: 381 YKVRRHLTEWHKKFTVSFACIMFFFIG---APLGAIIRKGGLGVPVVISVILFIFYYIID 437

Query: 323 SYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +          +     ++L    ++ + + +  K
Sbjct: 438 NMGFKMARDGVWDAWEGMWLSSVVLTPMGIFLTYK 472


>gi|160871958|ref|ZP_02062090.1| permease [Rickettsiella grylli]
 gi|159120757|gb|EDP46095.1| permease [Rickettsiella grylli]
          Length = 376

 Score = 67.3 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 116/364 (31%), Gaps = 24/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  S L+    +  I    + +  +N V+    + NIL K+     P  L 
Sbjct: 2   ILFRYLTREVLTSLLLITSLLFLILISNEFVHYLNQVAYGKFAANILWKLIVLESPRFLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL--FISENI 120
           ++ PF   +        +  + E+ +++  G S   L +  L    LL   +        
Sbjct: 62  ILLPFSLCLAILFTYGRLYADYEMTVLNACGFSLGQLTRLSLPFIFLLFFIVAGLSLWLS 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                            + L                +         ++T++ IF+  +  
Sbjct: 122 PSLLSYRNKLLTQTGIAIELQTLQPGRFQQTNQGHRIIYVEKVSTDHHTVKNIFLAQTSP 181

Query: 181 TQTHKIYYAQSG----------SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
            +  +     +           +        +  +G+ ++ +P   +  I  F++Y +  
Sbjct: 182 KEASQEITPWTILSAHRGYQTLNPHTKEPFFVAVNGKRYQGTPGQTEYYITAFQNYGIHI 241

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
               ++T   K +  +   L N +P +          Y SE   RL+  L  ++     +
Sbjct: 242 NLPRTTT-HKKQDTLSSMALWNASPPHKAC-------YFSELQWRLSAPLSILLLS---L 290

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
           +A     +  ++ K   +   + I   V+     +     +N      L L+      I 
Sbjct: 291 LAIPLSRVNPRQGKFLHVLPVIGIYI-VYLNLLLVGRDWIENGTISYTLGLWPIHGLLIL 349

Query: 351 LLMI 354
            +++
Sbjct: 350 TILV 353


>gi|46446270|ref|YP_007635.1| hypothetical protein pc0636 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399911|emb|CAF23360.1| hypothetical protein pc0636 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 360

 Score = 66.9 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/367 (12%), Positives = 128/367 (34%), Gaps = 18/367 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNI--LLKISGYLIPT 59
             +E Y +    + FL+  +    +  +I      + +      L I  L++   +++ +
Sbjct: 4   SIWERYFVSEFIKVFLLFLVCFYGLYVLIDYASHTSALPHHHIQLRIRELIRYYLFILAS 63

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              ++ P    +     + ++N + EL+ +   G    TL++P L +A+     L+++E 
Sbjct: 64  RAEILIPLALLIAFIKTVCTLNTHQELVALMAGGIKLKTLMRPFLMIALAFVCLLYLNEQ 123

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P     ++ L    +        E  +   + +D  + + +   +   +   +    
Sbjct: 124 FVLPSTLKKLRHLENATKHQKKRQLPEITVKHVVLEDRSLLLYQNYDSEKEEFFDVYWIE 183

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ---TESANSS 236
              +      ++  +  +++  +    +   + P  + +    +  Y  +          
Sbjct: 184 SIDS----IYRAKYLCPNKEIPVGYFVDHLLRQPNGELLQQQAYSQYEFKNLLFNQELLQ 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           + +L  +   L+ L    P+      E      + F+ +L      ++  L     A   
Sbjct: 240 SAILDPDILPLTNLFFQQPSLFANLSEKESKIATAFYWKLLMPWLCLLAIL-----APAP 294

Query: 297 ALVRQRKKIHPIFISLSISFGV--FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           + VR  ++I   FI +   FG+  F+        + +     PI  + L  I        
Sbjct: 295 SCVRFSRQIPIFFIYIYSLFGLIAFYMLMDAAQVLAKRQVLPPIWAIGLPFILVFSFY-- 352

Query: 355 KKKYTKI 361
             ++ ++
Sbjct: 353 SYRFARL 359


>gi|297250818|ref|ZP_06934295.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
 gi|296837906|gb|EFH21844.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
          Length = 188

 Score = 66.9 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/189 (10%), Positives = 59/189 (31%), Gaps = 8/189 (4%)

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           I    D            ++     +  L +           ++S    +S+ +  +   
Sbjct: 5   IWQRNDKNELTQAAEAESAVLNTDGSWQLKNIRRSILGEDKVEVSTAAEESWPISVKRNL 64

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              +++K +  ++  L      +     +  + Y   + ++L   +   +  L++     
Sbjct: 65  MDVLLVKPDQMSVGELT-TYIRHLQNNSQNTQIYAIAWWRKLVYPVAAWVMALVAFAF-- 121

Query: 295 KRALVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                R       +F  + +     +    F +        P+   IL   LF + ++  
Sbjct: 122 TPQTTRHGNMGLKLFGGICLGLLFHFAGRLFGFAGQLYGVPPFLAGILPTALFALLAV-- 179

Query: 352 LMIKKKYTK 360
            +I+K+  +
Sbjct: 180 RLIRKQEKR 188


>gi|254374089|ref|ZP_04989571.1| hypothetical protein FTDG_00250 [Francisella novicida GA99-3548]
 gi|151571809|gb|EDN37463.1| hypothetical protein FTDG_00250 [Francisella novicida GA99-3548]
          Length = 353

 Score = 66.9 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 124/357 (34%), Gaps = 8/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI R +  SFL+  +    + ++   L +++  +++  +  +++  +   +P +
Sbjct: 3   LNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSNNTANVSNFELIIN-TLIQLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    
Sbjct: 62  LYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTIVFGGY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  +  +            +    +      + +     +       +Q   + + R 
Sbjct: 122 IAPILQRQVDTNMVTYNTHDLWFKTPDGFMNIANIEPTKGKAYGIRKFMVQDNKVREIRY 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            ++       S ++   R+ I          S   K I I+   +  + +     S   +
Sbjct: 182 AESATYINDASANVFNIRKIIF-------PASDGQKHIDIVTNMTNAVWSNPIPISVAKV 234

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              + N     +   +      +  ++   +F + + Q L  +I  L+++  +       
Sbjct: 235 ITINDNDYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGSTRSS 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +      +F +       I  I   P  +      +  +  +  L IK K
Sbjct: 295 TLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSK 351


>gi|153808346|ref|ZP_01961014.1| hypothetical protein BACCAC_02640 [Bacteroides caccae ATCC 43185]
 gi|149129249|gb|EDM20465.1| hypothetical protein BACCAC_02640 [Bacteroides caccae ATCC 43185]
          Length = 638

 Score = 66.9 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 85/205 (41%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T++
Sbjct: 11  KKLDIFIVKSFMMLFVGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLV 70

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    + +     +     ELL +   G S + +++P++F    L    F  +N++
Sbjct: 71  PVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLVFFVCGLVGISFYFQNVV 130

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  ++ +  L    +       + E +F+    D  +KI+K N    +    ++     
Sbjct: 131 GPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMLYDVLIYDLKE 190

Query: 182 QTH--KIYYAQSGSIDLDRQAIILN 204
                ++ YA SG +++      L 
Sbjct: 191 GFEKARVIYADSGRLEMTADKQHLW 215



 Score = 44.2 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
           N++  L             +  +++E+HK++T  L  ++F  I    A    ++R+    
Sbjct: 353 NMASDLTFKSYTMETNDYAIRKHKTEWHKKITISLSCLLFFFIG---APLGGIIRKGGLG 409

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMIKK 356
            P+ +S+ +    +   +          + + + ++     ++ + + +  K
Sbjct: 410 MPVIVSVLVFIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGIFLTYK 461


>gi|150010074|ref|YP_001304817.1| hypothetical protein BDI_3493 [Parabacteroides distasonis ATCC
           8503]
 gi|256838884|ref|ZP_05544394.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|149938498|gb|ABR45195.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|256739803|gb|EEU53127.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 651

 Score = 66.9 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 75/183 (40%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    ++L+     FLM+    +FI  +  + + I+ +      + +L ++  Y    ++
Sbjct: 5   KRLYTFMLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +     ++    ELL + + G S I +++P++   + +S+  F  +N +
Sbjct: 65  PMALPLAILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNNV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +  +  L    +       + E  F++      + + K +P + L    ++     
Sbjct: 125 MPVVQVKLYTLLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYSE 184

Query: 182 QTH 184
             +
Sbjct: 185 GFN 187



 Score = 43.8 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
             +  + +E+HK+ T     ++F  I    A   A++R+     P+ IS+ +    +   
Sbjct: 381 YKVRRHLTEWHKKFTVSFACIMFFFIG---APLGAIIRKGGLGVPVVISVILFIFYYIID 437

Query: 323 SYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +          +     ++L    ++ + + +  K
Sbjct: 438 NMGFKMARDGVWDAWEGMWLSSVVLTPMGIFLTYK 472


>gi|114768925|ref|ZP_01446551.1| permease, YjgP/YjgQ family protein [alpha proteobacterium HTCC2255]
 gi|114549842|gb|EAU52723.1| permease, YjgP/YjgQ family protein [alpha proteobacterium HTCC2255]
          Length = 366

 Score = 66.9 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 116/361 (32%), Gaps = 8/361 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +  +Y  +    SF+   L IV +  +   L  +N ++     +   L +S     T L 
Sbjct: 2   TLAIYFGKRYLISFIRVFLSIVLLVLLFDFLTNLNRLNGIEAQIWNALILSLLRTTTYLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +       S++R+ E +++  +G S +  + PV+  A  L +      + + 
Sbjct: 62  LAMPLIIMLSALAFSVSLSRSNEFIVLRASGVSALKGLFPVISSAFFLGLISIFMLDPLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSY------LEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            K          K +                         +   ++  N    L  + I 
Sbjct: 122 GKMIGYYNIKLDKLRSKEQSQVLINDNGYWMRQATLNGHQIIKAVNVSNNGQRLHQVTIF 181

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVH-RKSPISKDISIMKFKSYTLQTESANS 235
           +  +       +    +   + + ++ N  +    K   +  I+  K K   ++TE   +
Sbjct: 182 NYDENGLVTERFFSESAALGNNELLLTNAIKWSDTKIKKNPIIANEKIKKLKIKTEITPT 241

Query: 236 STIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
             +   A+ + +S   +N            +  Y+S+  ++  +    ++  ++  V   
Sbjct: 242 QLLDGYASPETISPWNMNKQIQKVKSSGFSVLKYQSKKMEQYARPFLFIVMVVLGTVFTL 301

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           + +  R       + ++       F  F   + +  + P  I      L        L +
Sbjct: 302 QNSRARNVGISVVLAVASGFFLHFFQNFCTTLGRSGEIPLIIATWSPILSIGLIAMTLFL 361

Query: 355 K 355
            
Sbjct: 362 H 362


>gi|32491207|ref|NP_871461.1| hypothetical protein WGLp458 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166414|dbj|BAC24604.1| yjgP [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 357

 Score = 66.9 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 118/353 (33%), Gaps = 3/353 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ I +S       +  I +  ++++ ++ +S       I+  +    IP ++ 
Sbjct: 2   IILKYLIKKILKSQFHILCILFLIFFCQKLVRILSSMSEELIPKKIIFFLLILYIPEIIK 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +    V+  ++ + E++ I   G      IK +LFL +L+  F F++   I 
Sbjct: 62  LILPLSLFISIALVMQKLHNSNEIISIKTCGIGNECFIKVILFLNLLVMSFSFVNVMWIS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   +   ++ +     +    L E  F  + D   I       +  L+ IFIV      
Sbjct: 122 PLALNYKHKIISYNLSNIDKLKLNEKQFKFIKDKNIILFVDNIKDKNLKNIFIVKFILKN 181

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                Y     +              +  +    +   + FKS      S     I L  
Sbjct: 182 KE---YIPVVFVSKHGSLYKDLLKNKNVINLNYGEYYEIDFKSNYFFIASFERYQIELFN 238

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
               L    +      N     +E Y+ E++ R+T     +I  +IS     K+    Q 
Sbjct: 239 TFSRLKEPSSEYVYFKNLFNSCIEEYKLEYNWRITIVFSVLIMSIISFALNIKKLGSGQF 298

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
             +        I F             + +  +   +  F++   SI L    
Sbjct: 299 FNLFLGIFFYLIFFISQTFIYSNHSLFKLHSIFFMWIINFIYIFFSIALYYNN 351


>gi|254369661|ref|ZP_04985671.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122620|gb|EDO66749.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 353

 Score = 66.9 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 124/357 (34%), Gaps = 8/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI R +  SFL+  +    + ++   L +++  +++  +  +++  +   +P +
Sbjct: 3   LNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSNNTANVSNFELIIN-TLIQLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    
Sbjct: 62  LYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  +  +            +    +      + +     +       +Q   + + R 
Sbjct: 122 IAPILQRQVDTNMVTYNTHDLWFKTPDGFMNIANIEPTNGKAYGIRKFMVQDNKVREIRY 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            ++       S ++   R+ I          S   K I I+   +  + +     S   +
Sbjct: 182 AESATYINDASANVFNIRKIIF-------PASDGQKHIDIVTNMTNAVWSNPLPISVAKV 234

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              + N     +   +      +  ++   +F + + Q L  +I  L+++  +       
Sbjct: 235 ITINDNNYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGSTRSS 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I      +F +       I  I   P  +      +  +  +  L IK K
Sbjct: 295 TLILKLLIGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSK 351


>gi|218679464|ref|ZP_03527361.1| putative permease protein [Rhizobium etli CIAT 894]
          Length = 138

 Score = 66.9 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/124 (41%), Positives = 84/124 (67%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 11  MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  LI+P+L LA ++S+F F  +N+
Sbjct: 71  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAVVSVFSFFVDNV 130

Query: 121 IEPK 124
           +EP+
Sbjct: 131 VEPR 134


>gi|284036898|ref|YP_003386828.1| permease YjgP/YjgQ family protein [Spirosoma linguale DSM 74]
 gi|283816191|gb|ADB38029.1| permease YjgP/YjgQ family protein [Spirosoma linguale DSM 74]
          Length = 501

 Score = 66.9 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 63/169 (37%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  +L      F ++   ++FI  +  ++  I+   S    L    ++  Y     
Sbjct: 1   MKKIDKLVLGSFWGPFFLTLGVVIFIFLMRLLMFYIDEFVSKDLDLATFGRLLFYFALLT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++    EL  + + G S    ++P+L +AI +S F F   N 
Sbjct: 61  IPTALPLAVLLSSLMTFGNLGEFFELTALKSAGISLTRAMRPLLIVAIGISAFSFWFNNS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT 169
           + P        L    + A     L+E +F+       IK+ +      
Sbjct: 121 VAPWANLKGYSLLYDIKTAKATLNLKEGIFYNDLPGYSIKVDRKIKAEK 169



 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 41/104 (39%), Gaps = 4/104 (3%)

Query: 254 NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLS 313
           N      + + +  Y+ E H + TQ +   +  LI        A++++     P+ I++ 
Sbjct: 364 NVTYLTEKEKNVWRYQLETHHKFTQAISVFVMFLIGAS---MGAIIKKGGFGLPVLIAIV 420

Query: 314 ISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMIKK 356
               ++          +    ++PI  +L    +    LL++++
Sbjct: 421 FFIFLYVLTIAGDKYAKDGLLWVPIGAWLANIVLFPFGLLLMQR 464


>gi|57242354|ref|ZP_00370293.1| conserved hypothetical integral membrane protein, putative
           [Campylobacter upsaliensis RM3195]
 gi|57017034|gb|EAL53816.1| conserved hypothetical integral membrane protein, putative
           [Campylobacter upsaliensis RM3195]
          Length = 351

 Score = 66.9 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 112/345 (32%), Gaps = 12/345 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K    YIL     + L   L +  I  ++  +Q  NL SS   S   L K+ G+++P +
Sbjct: 11  LKLIFKYILNQFLGTHLSIFLVLFGIVSMVFFIQIANLTSSIEISFLDLFKLYGFMLPRI 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  +++  E ++    G + + + +  L +A  LS+ +     +
Sbjct: 71  LIFTLPLAFFVALTLALYRLSKENESVVFFTLGFTPLKMAQFFLKIATFLSVLMLGVALV 130

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      K      +  + F+Y       +  D +     +         ++   S D
Sbjct: 131 MIPIVYQLQKNFVDYKKTQIKFNYKTGEFGQKFLDWMIFIQDEKEGGYENIIMYHPKSTD 190

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               ++  A+  +++   +       E    +    +   +  +   L   +  S  +  
Sbjct: 191 NLKEQLIIAKEANLERSNEGFAFRLNEGKMYNFDGGEALFIG-EFENLVVNTKFSDNLGQ 249

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                     +N N +              EF   +   LFP+   L ++          
Sbjct: 250 TKAFYEYWDDINTNADKAR-----------EFVMYVCISLFPLASTLFALSFGIVTYRYE 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           +      +F  +++ FG+          +    +        +  
Sbjct: 299 KGFIYLGMFGVIAVYFGLLSSLYKPPLLMSFLIFSFAFAASIICF 343


>gi|298374434|ref|ZP_06984392.1| permease [Bacteroides sp. 3_1_19]
 gi|298268802|gb|EFI10457.1| permease [Bacteroides sp. 3_1_19]
          Length = 651

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 75/183 (40%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    ++L+     FLM+    +FI  +  + + I+ +      + +L ++  Y    ++
Sbjct: 5   KRLYTFMLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +     ++    ELL + + G S I +++P++   + +S+  F  +N +
Sbjct: 65  PMALPLAILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNNV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +  +  L    +       + E  F++      + + K +P + L    ++     
Sbjct: 125 MPVVQVKLYTLLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYSE 184

Query: 182 QTH 184
             +
Sbjct: 185 GFN 187



 Score = 43.8 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
             +  + +E+HK+ T     ++F  I    A   A++R+     P+ IS+ +    +   
Sbjct: 381 YKVRRHLTEWHKKFTVSFACIMFFFIG---APLGAIIRKGGLGVPVVISVILFIFYYIID 437

Query: 323 SYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +          +     ++L    ++ + + +  K
Sbjct: 438 NMGFKMARDGVWDAWEGMWLSSVVLTPMGIFLTYK 472


>gi|148244590|ref|YP_001219284.1| hypothetical protein COSY_0441 [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326417|dbj|BAF61560.1| hypothetical protein [Candidatus Vesicomyosocius okutanii HA]
          Length = 357

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 120/360 (33%), Gaps = 21/360 (5%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +R          + I  + +  Q++  +         +  LL + G+ +   +  +    
Sbjct: 1   MRNTLVILSAVFIVISLVVFGNQLVVVVKESLEEGIPVKDLLPLVGFNMIRDIVPILSLS 60

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             +     +  + +N+E +I+++ G +    +  +  L I++ I + I   ++ P  +  
Sbjct: 61  LLLAIILSINKLYKNSEAVIMNSLGLNNKHFMVFIQPLVIVIVIVIVILTTVVVPWSKQQ 120

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY------NPNNTLQGIFIVDSRDTQ 182
              +   ++    FS+++E  F    +   I  +        +    ++GIFI    + +
Sbjct: 121 KDLIINHSKNISKFSFIKEREFQEFKNGDIIFFASKVSNFNNSKEQNMEGIFIYTFINNE 180

Query: 183 THKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
              I   Q+        +   + L +G  +    +     I+ F  Y +Q    N   ++
Sbjct: 181 PVIILAKQAKKYTNLNTNSVYLRLKNGTNYHGFILDTKKKILNFNLYDIQIIDGNMKKLI 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            K              +             +EF  R++Q L  +I   + +         
Sbjct: 241 SKVIKVESKSTFELFFSRKLTE-------IAEFQWRISQPLSILILSALGV---LLGRTS 290

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +   +   + I + +              +   ++   I + ++ L  +  IF+    + 
Sbjct: 291 QNGGRNLGVLIGVVVFILYNNALLISKSVLERGESLPIIGLWWVHLVMLLLIFIFYSIRN 350


>gi|323137915|ref|ZP_08072990.1| permease YjgP/YjgQ family protein [Methylocystis sp. ATCC 49242]
 gi|322396918|gb|EFX99444.1| permease YjgP/YjgQ family protein [Methylocystis sp. ATCC 49242]
          Length = 388

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 128/363 (35%), Gaps = 12/363 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ + +G   L+  L +     +  +L ++   +       +++     + PTV 
Sbjct: 3   RLLFSYLFKRVGFGVLIVQLALSVPVVLSYLLYQLPPAAVRG---GLVIPALVGITPTVA 59

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T    + M     + ++     S  ++ +P L LA  + +  +   N I
Sbjct: 60  YVTLPMAVGVATALEFSRMASEGMIAVLYALRLSAWSICRPALTLAAGIVVLGYALANFI 119

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRD 180
            P   + ++ +    + +L    L+   F+  D+ +  + I ++   +    +F+     
Sbjct: 120 APHYATNMQDVLNVVRNSLNHRMLDAAHFYTFDNGVKTLYIERWVTPDLAANLFVRQLSI 179

Query: 181 TQTHKI-YYAQSGSIDLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +  +    A       +   +I  L++G +  +S  S D+ I  F  Y +      S  
Sbjct: 180 EKMQEETITAARAEFRRNESGVIVALSNGSIQTRSLSSGDVRIANFDEYAMALPMQGSGG 239

Query: 238 IVLKANDQNLSFL----LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +  +   + +  L       N  +    P  L  +R+E  KR       +   L+++   
Sbjct: 240 LPDR-GWRGVYELSAGAFLANYESAKGDPRQLGEWRAEAAKRFGVPALALAHTLLAMALV 298

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                +  R+      I ++I          +   +  + ++  +L         + + +
Sbjct: 299 LSFGNITGRRGAGGSLIIIAIPAAHIAFLVGLESLLRISGFFFLLLAGLALAEVGVSVWL 358

Query: 354 IKK 356
           I +
Sbjct: 359 IAR 361


>gi|297623245|ref|YP_003704679.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
 gi|297164425|gb|ADI14136.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
          Length = 374

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 104/364 (28%), Gaps = 34/364 (9%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+LR    + L S L    +A       R+  +      L  +L      +PT + 
Sbjct: 2   RLDRYLLRECLPALLFSLLLYSGLAVTSANFPRLQWII--GTPLWGMLGWLALQLPTAIV 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +        +    ELL +   G +   L  P+L L +L +         + 
Sbjct: 60  QTLPIALLLAVLLTFGRLAAANELLAVQAGGVALRRLSAPMLALGLLAAGCALAMNQWVL 119

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+    +  L  +     +  +  E     L +      +     + L G+ +   R  Q
Sbjct: 120 PRANVRVGALWWELTSGGSGLFRLERQSIPLGEFSLSFAATDRRTDDLFGVRLEAWRGRQ 179

Query: 183 THKIYYAQSGSIDLDRQAII-----------LNDG------------EVHRKSPISKDIS 219
                 A+          +            L DG             +H ++P      
Sbjct: 180 LSV-VLAERARFVEGGLELYGYQNAVLDVGSLRDGAGTPEAQLQALVRLHNRAPSPDAPL 238

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
            + F       +   +        D         + N+P+            FH++L + 
Sbjct: 239 RITFAE---DVDELITRFSGGGFEDTRSVTRTLRDANDPSLSAAERRAAAVLFHRKLAEP 295

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
              +    +++  A   A  R       + ++L+     ++    +   + Q       L
Sbjct: 296 FANLTLLAVALPLAVLHARSRSVAFGLSLAVTLA-----WYLLLTLGQLLAQAGVLPVWL 350

Query: 340 YLFL 343
            L+ 
Sbjct: 351 GLWF 354


>gi|224418390|ref|ZP_03656396.1| permease [Helicobacter canadensis MIT 98-5491]
 gi|253827708|ref|ZP_04870593.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141921|ref|ZP_07804114.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511114|gb|EES89773.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130952|gb|EFR48569.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 355

 Score = 66.6 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/358 (12%), Positives = 105/358 (29%), Gaps = 5/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  YI+    + F +  + +     +I +++ ++ +    +S N+++ +  Y     
Sbjct: 1   MTLFSRYIISLYLKYFFILFVSLECFFVLIDLVKYLDEL---PQSANLIVLLIFYDFVYA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    +  SM RN++       G S+  +  P+  ++ L+++   +    
Sbjct: 58  SNFILPLSLVLAQIVLSISMLRNSQFTAFLALGYSKARIFLPIFIVSFLITLLFVLLNAT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                +  +  +  +  L    + L             I        N            
Sbjct: 118 PFAYAKERVDLIIERGYLGSYKNDLFIKYNENYIYFEKIFPLLKMAENVKVYEVFNKQVI 177

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                              A I               I   K        +      I  
Sbjct: 178 KIIEAPKATFIEDKWKLEDARITTLDSNLEVGKNPLKIEEQKTYETLEGFKPKILDNIYE 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF-PVIFGLISIVAADKRALV 299
           K    ++   L         +    +  RS  +  +    F P++   ++    +     
Sbjct: 238 KQGSVSIVDALEA-IWLLKKQGVNTQKLRSSLYALIFFPFFAPLVMVCLARFTPNSNRYA 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                   + + + I +GVF+ FS +       P    IL + +  + S++L +   K
Sbjct: 297 NIGGITLGMILGVLIVWGVFFSFSRLSMSGFLPPEVSIILPIGILGLVSLWLFLRLFK 354


>gi|330813915|ref|YP_004358154.1| putative permease YjgP/YjgQ family protein [Candidatus Pelagibacter
           sp. IMCC9063]
 gi|327487010|gb|AEA81415.1| putative permease YjgP/YjgQ family protein [Candidatus Pelagibacter
           sp. IMCC9063]
          Length = 375

 Score = 66.6 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/366 (12%), Positives = 101/366 (27%), Gaps = 13/366 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES--LNILLKISGYLIPT 59
                Y  +    S L+  L    ++ +I  +  +  +        + +   ++    PT
Sbjct: 7   SKLIYYFSKEFIFSLLLVFLVFFSLSLLINSVGELIYLKDKKLENVIWMATILTLAKTPT 66

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSR-----ITLIKPVLFLAILLSIFL 114
            +  ++ F F          + +N E+  +   G S+     I  I   +    ++    
Sbjct: 67  TIIELSIFIFLFSGILFFVKIQKNNEVNTMLLAGISKTLPILIPSIISFICGLFIIFFLT 126

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
            IS   +    +      S    + +    L          ++         N  +    
Sbjct: 127 SISSASLNFYEQEKRIYSSNDNLIVMNKMGLWFMENTTSGYNIIRADKIEKNNFNILNNV 186

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHR-----KSPISKDISIMKFKSYTLQ 229
            + + D   + +    S  I ++++   LN  +V +           + + +   S+   
Sbjct: 187 TIYNLDQGFNFVKRYDSEKITINQKRWSLNKTQVTQEKKSLSDSKKDNDASLVEMSFDSS 246

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
               +        N  +   +        N R    E  R +FHK L+   +     L+S
Sbjct: 247 ININDLKNYFTDVNTVSFWEMF-KTIKTLNSRGYSAEELRVKFHKYLSLPFYLFAMILVS 305

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                                 L +        S       + P  I +       I   
Sbjct: 306 TTFTMGANKQYNTFMYLFFGTILGVCIYFLNDLSISFGLSNKLPLAISVWSPVGLIIILS 365

Query: 350 FLLMIK 355
            + +I+
Sbjct: 366 TINLIR 371


>gi|118474326|ref|YP_891923.1| YjgP/YjgQ permease [Campylobacter fetus subsp. fetus 82-40]
 gi|118413552|gb|ABK81972.1| putative permease, YjgP/YjgQ family [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 341

 Score = 66.6 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 122/352 (34%), Gaps = 20/352 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+      +F      +  I  ++  +Q   + S    S + LLK+  +++P +
Sbjct: 1   MNKVNKYLFASFLSTFASLFATLFLIMSIVFFIQIARITSYIEISFSELLKLYLFMLPQI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +        +++  E +++   G     +    +F++ ++S+ + I+  I
Sbjct: 61  LLFTIPIGFFVSVAMSFFRLSKENESIVMFTLGQDPKNISNFFIFISFIVSVVMLINSLI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR- 179
           + P  ++         +  L+ +        +    +     + + N++L+   IV    
Sbjct: 121 VMPIAQNLNDNFIEYKKTKLSLNIKPSEFGQKFGSWMVFIEKQNDNNDSLKYENIVMYDV 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +  ++  +QSG I      + L   +           +I  +++  ++T   ++    
Sbjct: 181 SDENERLITSQSGDIKNQNSNLELILKKGKMYDIRDNKWNISSYENMVIRTLIKDNKNET 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               +      L    ++   +   + T  +         LFP+   + ++         
Sbjct: 241 YSLKEY----WLKAFSDDKRAKDLSIYTLVA---------LFPLASVMFALSFGIVTYRY 287

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            +      IF  L   F     F        Q  Y IPI+++  F  S++  
Sbjct: 288 EKGIIYFGIFGVLFAYFAFIMLF------ARQPIYAIPIIFIVSFVFSALTF 333


>gi|333029769|ref|ZP_08457830.1| permease YjgP/YjgQ family protein [Bacteroides coprosuis DSM 18011]
 gi|332740366|gb|EGJ70848.1| permease YjgP/YjgQ family protein [Bacteroides coprosuis DSM 18011]
          Length = 632

 Score = 66.6 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 82/206 (39%), Gaps = 2/206 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + ++L+  G  F+ +    +FI  +  + + ++ +      + +L +   Y   T+
Sbjct: 4   LKKLDKFVLKSFGLLFIATFFICLFIFMMQFLWRYVDDLVGKGLEMTVLGQFFFYSALTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     +     ELL +   G S   +I+P++ LA+LL    F+ +N 
Sbjct: 64  IPASLPLATLLASLITFGNFGERFELLAMKAAGISLFKIIRPLMILAVLLCGISFVFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I PK  S +  L    +       + E +F+   D   I + + +    L    I+    
Sbjct: 124 IGPKAFSKLTTLLISIRQKSPELDIPEGIFYDEIDGYNIFVKEKDRKTGLLYDVIIYEFS 183

Query: 181 TQ--THKIYYAQSGSIDLDRQAIILN 204
                 +I  A +G + +      L 
Sbjct: 184 EGFDNARIIVADTGQLAMTADKQYLY 209



 Score = 43.8 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 48/128 (37%), Gaps = 4/128 (3%)

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
            +   S   + K + ++L+   +            +  +   +H+++T     ++F  I 
Sbjct: 332 LKKKQSVLNLAKRDIESLATDWSFREVEVKNTDLQIRRHLMAWHEKITLSFACLVFFFIG 391

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISS 348
              A   +++R+     P+ IS+ I    +   +       +  + + I +++    ++ 
Sbjct: 392 ---APLGSIIRKGGLGMPVVISVLIFIIYYIINTMGSKMAREGEWIVWIGMWMSTLILAP 448

Query: 349 IFLLMIKK 356
           +   +  K
Sbjct: 449 VGGFLAYK 456


>gi|257457656|ref|ZP_05622823.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
 gi|257445042|gb|EEV20118.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
          Length = 300

 Score = 66.6 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 88/287 (30%), Gaps = 3/287 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+L+     F+++ LF + +  +  +   +     +      LL++    +P  
Sbjct: 1   MKILQRYLLQLFFPVFVITILFFILLLQLGDLFLNLAQYLQNQVRFVTLLRVMYLYLPKC 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P      ++  + +M    EL  I  +G     L+ P++     LSI +F  E+ 
Sbjct: 61  ISFAMPLSVLFASSYTMGNMYAKNELTSIFASGMPLTVLVAPLVLCGFALSIGMFYFEDR 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I    +     L  +           + +       +      Y+ N       ++  R 
Sbjct: 121 ILIHFQRQKIALVNELLEPQQNLNSSDLVILSESGKIVYFADYYDDNRKELSNVLIVMRT 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                    +  S         + D  ++  +  +                S      + 
Sbjct: 181 ESGDVSTVIKGSSAQWQTDHWAITDKSIYTFTAENDVHYQDAIDEGLFSEPSETFQRNIT 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYR---SEFHKRLTQWLFPVI 284
             ++ +++       N   +    +  +    + FH RL + L    
Sbjct: 241 SIDEMSIAQAKVFIDNLKKWACPTMNIFLNITAVFHFRLRRSLCCFS 287


>gi|320101899|ref|YP_004177490.1| permease YjgP/YjgQ family protein [Isosphaera pallida ATCC 43644]
 gi|319749181|gb|ADV60941.1| permease YjgP/YjgQ family protein [Isosphaera pallida ATCC 43644]
          Length = 507

 Score = 66.6 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 82/206 (39%), Gaps = 7/206 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y++R +  SF ++ L I  I  +  ++      + +   L+ +++I+ YLIP  LP
Sbjct: 6   ILQRYVIRQLLGSFALALLAISSIIVLFLVMAE---AAKAGLGLDQIVQIAPYLIPGTLP 62

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P       T V   +  + E+  +   G S  T++ P + L+I+LS  L+++ + + 
Sbjct: 63  YTVPVALLFSVTVVYGRLAGDNEITAVKAAGLSVWTVLWPCILLSIVLSGALYLAASHVI 122

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS---- 178
           P+    +K++          ++L  +      +  ++ I K    + L            
Sbjct: 123 PEANHAVKRVIFSNYEQTFTTFLRRDRILNNPNWPFVIIVKDMEGDDLIAPVFKRRAKIN 182

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILN 204
                     A+   +  D +  ++ 
Sbjct: 183 GRDGFDLNIVAKRARLSFDMERAMVR 208



 Score = 42.3 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/105 (11%), Positives = 32/105 (30%), Gaps = 5/105 (4%)

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
           N      +          +E   R+     P  F L+        A   +R  +      
Sbjct: 400 NRAFREYDDWDYYDRKLETEKQMRIALSCGPFFFALLGAPVGILFA---KRDYLSAFITC 456

Query: 312 LSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIFLLMI 354
                 +++  + +   + +     P++ L+     +S +  L++
Sbjct: 457 FLPIILIYYPLTLLGINLGKEGVLDPMIALWMGNLTLSVLAGLVL 501


>gi|16125010|ref|NP_419574.1| hypothetical protein CC_0757 [Caulobacter crescentus CB15]
 gi|221233731|ref|YP_002516167.1| hypothetical protein CCNA_00794 [Caulobacter crescentus NA1000]
 gi|13421992|gb|AAK22742.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220962903|gb|ACL94259.1| conserved membrane spanning protein [Caulobacter crescentus NA1000]
          Length = 397

 Score = 66.6 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 94/260 (36%), Gaps = 6/260 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + Y+LR          +  +    + ++++  +L+S +TE L  L ++   L P  +
Sbjct: 5   NTLDRYLLRRTLAPMSAVLISTMVAFLMERLMRSFDLLSQTTEGLRYLAELLVNLTPHYV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +    V+  +N+++E+  I  +GTS      P + + +LL +   I    +
Sbjct: 65  GLTLPGGFFIGLFVVVNGLNKSSEIDAILASGTSLTRFTAPFVAMGVLLMVLSVILFGFV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL-QGIFIVDSRD 180
           +P  R     +   A+ A     +          D ++   + + +    Q +FI     
Sbjct: 125 QPYSRYAYHAVLHAAENAGWNGDVRPKALLSAGSDFFLTADRTDASGRYLQQVFIRRIDP 184

Query: 181 TQTHKIYYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                I  A S  +  +         L +G     +       ++ F        S ++ 
Sbjct: 185 NGREDILTAVSAVVHKNPADSHIALELTNGR-QISTVAGAQSYVVNFSRLMFDVPSGDAG 243

Query: 237 TIVLKANDQNLSFLLNPNPN 256
            + L+  D +   L+     
Sbjct: 244 LLRLRGEDVSELTLIELARQ 263


>gi|326797997|ref|YP_004315816.1| permease YjgP/YjgQ family protein [Sphingobacterium sp. 21]
 gi|326548761|gb|ADZ77146.1| permease YjgP/YjgQ family protein [Sphingobacterium sp. 21]
          Length = 505

 Score = 66.2 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 91/260 (35%), Gaps = 6/260 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   + +L+   + F+++   ++F+  ++ + + I+ +        ++L++  Y     
Sbjct: 15  MKKVHVLVLKAFFKPFIVTFFIVMFVLLMLFLFKYIDDLIGKGFEWYVILELLWYASAAQ 74

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    + +     ++  + EL+ I   G S    + P++ L  L+SI  F   + 
Sbjct: 75  ISMAMPLAMLLSSIMTFGNLGESYELVAIKAAGISLRKAMMPLIILVSLISIGSFFFSDY 134

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +  L    +       +++ +F        I+    + + T+    I+    
Sbjct: 135 ILPVTNLKMGSLLYDVRNKKADFLIKDGIFNNSIPGYSIRAKNKSKDGTVLYNLIIYQHG 194

Query: 181 T--QTHKIYYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
              +   +  A+ G +   R        L DG  + ++         + +      +   
Sbjct: 195 NISRGTNVLLAKEGVMYNSRDNNYMILKLKDGVRYEETTAGDRSYNPRQQFTRYYFDQTE 254

Query: 235 SSTIVLKANDQNLSFLLNPN 254
               +     +     L  +
Sbjct: 255 QKFDMSTFQMKRTDEDLFKS 274



 Score = 40.4 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 48/114 (42%), Gaps = 6/114 (5%)

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
           + +  +L+    +       +  Y  E+HK+ T  +  ++   I    A   A++R+   
Sbjct: 358 RYIKEVLDMKAKSDKDFDLSIVRYILEYHKKFTLAVSCLLLFSIG---APLGAIIRKGGL 414

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
             P+ +++ I F ++   S +  K  +     P+L  +  +  ++ + + +  K
Sbjct: 415 GLPVVMAI-IFFLIYHIISTVAEKSAKEGNIDPVLGTWTAIIALTPLGIFLTYK 467


>gi|294508120|ref|YP_003572178.1| Conserved hypothetical protein containing permease domain
           [Salinibacter ruber M8]
 gi|294344448|emb|CBH25226.1| Conserved hypothetical protein containing permease domain
           [Salinibacter ruber M8]
          Length = 492

 Score = 66.2 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 107/289 (37%), Gaps = 14/289 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++     +LR +   F      ++F+  +  +++ +  ++     +++++++  Y +  +
Sbjct: 21  LRRLHWIVLRRLPGPFFGWLGTLMFLLLMQFLIRWLPEIAGKGIPVSVIVELIAYNLAYM 80

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +        +  +    +I +TG S   ++ P L +A LL   +    N+
Sbjct: 81  VVLAVPMSVLLAALMAFGELAESQYYTVIKSTGISFGQIVWPALVVAALLMGGMLYFNNV 140

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+     +QL +  +       L   +F+   +D  I +    P         +    
Sbjct: 141 MLPEANHRARQLWSDIRGKRPGFELRPGIFYEDMEDYSILVQDRPPGTNKLIDVTIYDYT 200

Query: 181 TQTHKI--YYAQSGSIDLD----RQAIILNDGEVHRK-----SPISKDISIMKFKSYTLQ 229
               +     A+ G I+      R  + L +GE+HR      +  S+    + F  + ++
Sbjct: 201 QGRDRQAVIKAERGVIESSAGGARLTLTLRNGEMHRPLPPDANNQSERYERLTFDRHRIR 260

Query: 230 TESANSSTIVLKAND--QNLSFLLNPNPNNPNYRPELLETYR-SEFHKR 275
              +N      ++ +  ++   +  P   +     +     R    ++R
Sbjct: 261 FTLSNVVFRRSESEETARSTRTMRTPRLLDTLDSLKTERDARYQTLYER 309



 Score = 59.2 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           +     +  ++   + +Y+ EF+K+ +  L  +IF ++            +R  +  I  
Sbjct: 365 IQNIRRDTEWQTRRIRSYQVEFYKKFSIALACLIFMVVGAPLGLAL----RRGGLATIGA 420

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLLMI 354
                F ++W       K+ +  ++ P   +++    +S   L +I
Sbjct: 421 VALGIFMLYWITLVQGEKLSERGFFPPWLGMWIANLLMSGAGLWLI 466


>gi|319760186|ref|YP_004124124.1| putative permease [Candidatus Blochmannia vafer str. BVAF]
 gi|318038900|gb|ADV33450.1| putative permease [Candidatus Blochmannia vafer str. BVAF]
          Length = 363

 Score = 66.2 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/361 (12%), Positives = 123/361 (34%), Gaps = 5/361 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++YI + I  S  +  L ++ ++ +I+++  +      T S+  +   +   +P   
Sbjct: 3   KILDMYIKKSILSSISIVFLILISLSSIIRLIDGLRNFEKKTYSIIEIFFCTFLSLPKDF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +    EL+I+   G S   +   V+ +++ + I   +    +
Sbjct: 63  ELFLPISILLGGLLGLGVLEIRNELVIMKVFGLSYFQITFSVVKVSVFILILHIMLNEWL 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +  +       +    F   +    + +D++ ++ I      N + G+ +      
Sbjct: 123 LPGSQYMLYIYQGHKEYNSYFFPEKNKNLWIIDNNGFVCIEYMPTTNNVFGVNLYYLTKD 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +  +       +  +++   + +  E++           +    +         S I   
Sbjct: 183 KKIEKIIYFKDATYINKSWFVSSAIELNFSDKTHIVNRTVFHYKWNTILTPDLLSIITTN 242

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++S L +      N   +  + Y   F  ++   L  +I  +IS++ +      ++
Sbjct: 243 PRVLSVSKLFSCIK-YFNGINQNSQYYELIFWNKILSPLTGMIMLIISLLYSFGPFSKKK 301

Query: 302 RKKIHPIFISLSISFGVFWGFS----YIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                     +   F V   F      + +        IP+L   +  I  +F  +   +
Sbjct: 302 IGFRLFFGSIIGFLFYVLHQFFDVFCVMHNIYPLVGSIIPVLLFIVINIVIVFYKISNFR 361

Query: 358 Y 358
           +
Sbjct: 362 F 362


>gi|298372198|ref|ZP_06982188.1| permease [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275102|gb|EFI16653.1| permease [Bacteroidetes oral taxon 274 str. F0058]
          Length = 490

 Score = 66.2 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 61/184 (33%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LY+LR      +++    +F+  +  I  R++ +      +  + K   Y      
Sbjct: 5   KKLDLYVLRQFMTLLVVTFFISLFVIVMQFIWLRLDDMMGKGIPIETMAKFFFYSSLAFT 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +     +M    EL+ +   G S   +++ ++    ++ I  F   N +
Sbjct: 65  PMALPLAILLASLMTFGNMGERFELIAMKTAGISLFRIMRSLMIFIAMIVIGAFFYSNYV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +  +  L    +       +    F+     + I     + +       ++     
Sbjct: 125 IPMAQKRMWTLVYSFKDKALEIEIPVGEFYTGIRGVNIYARGRDTDKKAMTNVMIYDFTK 184

Query: 182 QTHK 185
               
Sbjct: 185 GFQS 188


>gi|88800547|ref|ZP_01116109.1| hypothetical protein MED297_15285 [Reinekea sp. MED297]
 gi|88776692|gb|EAR07905.1| hypothetical protein MED297_15285 [Reinekea sp. MED297]
          Length = 353

 Score = 66.2 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/358 (12%), Positives = 111/358 (31%), Gaps = 5/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+++       +  L I  + +V  I        + T +L   +      +   
Sbjct: 1   MNIQNGYLVKQTSLMVSIVLLAIAGLLFVTGIADEAARRMTDTYTLQSAVIYKFSTLSAE 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +         + T   + S N++ EL II  +  S   L+  +L  A++L   ++     
Sbjct: 61  VYEYIGVIVMLGTLITVASFNKHQELTIIQLSAASAPALLLRLLLPALILLPIVYGIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P  ++  +Q  A  +     +       +   ++ Y+ +   +    L GI       
Sbjct: 121 AAPSWQNNAEQARALLRGEKNPTL---RGQWYKANNEYVNVEFISNETELTGITRFQMNP 177

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +          ++  D   +++N  EV R     +  ++                 + L
Sbjct: 178 QKQLMAASYSKRAVYSDGSWVLINTIEVKRTERGFERKTMGISSWENAVFTPELVRNLAL 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           ++++  L  L             L          R+   L  +    +++  A      +
Sbjct: 238 ESSNLTLPEL-WTQVRFRAEAGTLTPALERTLWNRVLFPLQYIGLMFVALAFAFGSFRQK 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                    + L +  G+          +   P +  +L +     + +   ++K++Y
Sbjct: 297 TIGDAAFKALVLGVISGLLIDTLSASLMVLAMPAFAAVL-VSNSLFTGLAFYLLKRRY 353


>gi|300871686|ref|YP_003786559.1| permease YjgP/YjgQ family protein [Brachyspira pilosicoli 95/1000]
 gi|300689387|gb|ADK32058.1| permease YjgP/YjgQ family protein [Brachyspira pilosicoli 95/1000]
          Length = 431

 Score = 66.2 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 78/198 (39%), Gaps = 1/198 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI+      F+   LF  FI  +  + +   L+ ++   +   L+I  Y++P  
Sbjct: 1   MKKIKKYIILEAIGPFIAGVLFFTFIFVIQLLPELFKLILNNGAPIWTSLEIFVYMLPFN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    M        ++ + E++++   G S + +  P++ L     +F     N+
Sbjct: 61  VAITIPMSILMAGIMGYGRLSSDNEIIVMRALGFSHMRIYAPIIILGFFTFLFSLFFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +  +     + L +          + +  F     D+ + I  Y  +N      ++   +
Sbjct: 121 VMTESNYRYRALFSYIINIRPSIAVGKLEF-AYISDINLSIGAYYSDNNGMSNVVIYDGN 179

Query: 181 TQTHKIYYAQSGSIDLDR 198
           +Q  +I  A+SG    + 
Sbjct: 180 SQARRIITAKSGKWKNNE 197



 Score = 45.4 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 59/239 (24%), Gaps = 2/239 (0%)

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
               +          L            F  +D         N    +  +   +    +
Sbjct: 192 KWKNNEANSKVITLTLYDGIVQEMPVYGFVSNDFTVFDAMDINIVRNVSKLNDHERGLRE 251

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTIVLK 241
                  +  +  ++     L +   +  S    +  I     +  +   +AN S     
Sbjct: 252 IPAWEIRKKINTSMNNSLQTLTNQISNMISTAYSNSFITNIDGTTNIILTNANVSFSSFS 311

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                 +            +  +   Y  EFHK ++     +    I            +
Sbjct: 312 NTYVTTNSAELDRLYKSTKKEAVPYFYYVEFHKFISIPAACLFMVFIGAPLGIVGKRSGR 371

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                   I + + + +      I     + P ++ + +  +        LMI+  ++K
Sbjct: 372 GFGFGLSVIVVVVYYILITVAEIIAGN-RKVPGFVAMWFPNIVLAVIGGFLMIRSFFSK 429


>gi|218264803|ref|ZP_03478497.1| hypothetical protein PRABACTJOHN_04207 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221776|gb|EEC94426.1| hypothetical protein PRABACTJOHN_04207 [Parabacteroides johnsonii
           DSM 18315]
          Length = 655

 Score = 66.2 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 72/184 (39%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    ++L+     FLM+    +FI  +  + + I+ +      + +L ++  Y    ++
Sbjct: 5   KRLYTFMLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +     ++    ELL + + G S + +++P++    ++SI  F  +N  
Sbjct: 65  PMALPLAILLASLMTFGNLGERLELLAMKSAGVSLVHIMRPLIITISMISIGAFFFQNYA 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +  +  L    +       + E +F+       + +   +    L    ++     
Sbjct: 125 MPVVQVKLYTLLWSMRQKSPELDIPEGVFYSEITGFNVYVKHKDTETGLLRDMMIYDYSE 184

Query: 182 QTHK 185
             +K
Sbjct: 185 GFNK 188



 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 86/293 (29%), Gaps = 6/293 (2%)

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +  +  L +      L++    G S  +L K         S+              
Sbjct: 189 VSVMVADSGRLKTSADKMFLVLSLFNGESFRSLDKQSSTTGAKSSVPYQRETFKSRDILI 248

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
                 S   +  +   ++ +N+         + +   +  N         S      K 
Sbjct: 249 EFDANFSRTDESFMQNQFMGKNMHDLQIFIDSVSVRLDSIQNVNAKNVYETSYKKTLKKP 308

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND-- 244
              +  ++  +      N          +K + +M F S          +TI+ +A    
Sbjct: 309 QDIKQNNVKDEPNNDKSNTETTPEIQKTNKPVIVMNFDSLYQAENPGKKATILTRAKSSI 368

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
           +N+                 +  + +E+HK+ T     ++F  I    A   A++R+   
Sbjct: 369 ENMKADYFFKAATIGDEAYRVRRHLTEWHKKFTLSFACMVFFFIG---APLGAIIRKGGL 425

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
             P+ IS+ +    +   +          +     ++L    ++ + + +  K
Sbjct: 426 GMPVVISVILFIFYYIIDNIGFKMARDGVWEAWQGMWLSSAILAPLGIFLTYK 478


>gi|325971216|ref|YP_004247407.1| permease YjgP/YjgQ family protein [Spirochaeta sp. Buddy]
 gi|324026454|gb|ADY13213.1| permease YjgP/YjgQ family protein [Spirochaeta sp. Buddy]
          Length = 420

 Score = 65.8 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 55/413 (13%), Positives = 120/413 (29%), Gaps = 56/413 (13%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                +I R    SFL++  F  FI ++ QIL     +         +L++    IP  L
Sbjct: 8   SLVYRHIGREYLLSFLVAFFFFFFIFFINQILLIAQRILLKQVDYFSVLQLVLLSIPQFL 67

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF     ++ V+  ++ N E+L I ++G S   +  P++ +++  S+  F++ +  
Sbjct: 68  LYTFPFSSLTASSMVIGDLSGNNEILAIRSSGISLKHVFIPIIIISLAFSMLTFLTADKA 127

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK--------------------- 160
            P      ++L       L    L  N    + + + +                      
Sbjct: 128 LPWSTKKYRELYTDLMRDLPTLELMANSTNTIANTVMVNKGVEGNTVHDIILFETSSVRG 187

Query: 161 -----ISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSP 213
                  K   +      FI          +     G         A    +      S 
Sbjct: 188 GQILSAPKAEVSLYDLQSFIYQLELDNPLILKSETQGGWALSKAESAQFFLNFSGQIASI 247

Query: 214 ISKDISIMKFKSYTLQTESANSSTIVLKAN--------DQNLSFLLNPNPNNPNYRPELL 265
            S   S +  K      +    +    K          + +L+ L++    +       +
Sbjct: 248 ASALPSQLSIKELQQNIQEHKIALQAEKKRYQEKVQTLELSLAELVDKAKTDAEVSVSHI 307

Query: 266 ET--------------------YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
           E                     YR+E HK+        +   ++   +  R    +    
Sbjct: 308 EELEVQLKQLKDQKPINFYYQYYRAELHKKYALSAACFMLVFLTFSLSFFRVKHGRLIGF 367

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
               +   + + + +     I  +  +P  +      L     +  L+  ++ 
Sbjct: 368 GLSMLVAVVYWYLLFFAQMQIFSLSISPALLIWSPNLLMFFGGLLFLLHARRL 420


>gi|289548597|ref|YP_003473585.1| permease YjgP/YjgQ family protein [Thermocrinis albus DSM 14484]
 gi|289182214|gb|ADC89458.1| permease YjgP/YjgQ family protein [Thermocrinis albus DSM 14484]
          Length = 351

 Score = 65.8 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 117/357 (32%), Gaps = 11/357 (3%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YILR   ++F +S   ++    +    + +  +    +SL I  +     +P     
Sbjct: 2   LQRYILRLYIKAFGLSSAVLLGTGVLYLTFETL--LVFRQKSLEIFFQYILLSLPVAFLY 59

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           ++P    +  T ++    +     +I + G   I L++PV+F +++LSI        I P
Sbjct: 60  LSPIVSWIALTMLIRFFIQRQLDRLIVSFGVPPIHLVRPVIFFSLVLSILHIYMSFQIYP 119

Query: 124 KCRSTIKQLSAKAQ--LALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
             + ++  +  + +     T    ++    +  + +          +      +      
Sbjct: 120 SFQRSLYTIEKEYKKGKKDTLLIKDQWFALKDGEKVVYSHIGLADVSKGTAYDVFLLYTK 179

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +       ++        ++ + D          K    M+          +N   +  K
Sbjct: 180 EGSIEATLRASKAFWKGNSLFIPDAYYEDLEKGGKFYGPMEVS----FLSLSNIRPLASK 235

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                 + L++               Y +E  +RL   L P++   I   A  KR  + +
Sbjct: 236 LEHITFTELISVY-GMAERLGINRYAYLAEILRRLQLSLMPLLMVTIVARALLKRRSLVE 294

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                    SL++             +I  NP +  +   FL  +    L  ++K +
Sbjct: 295 GSLYGGF--SLALHMLSLNLIKITAEEIGVNPLWGLLPSFFLLMMVLRSLYDLEKGF 349


>gi|325919212|ref|ZP_08181261.1| putative permease [Xanthomonas gardneri ATCC 19865]
 gi|325550312|gb|EGD21117.1| putative permease [Xanthomonas gardneri ATCC 19865]
          Length = 360

 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 130/357 (36%), Gaps = 15/357 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + + + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRMLRPILMLVVPVVVLIGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T + +   A  ++  + LE   F  L     + ++  + +    G   +  + 
Sbjct: 121 LGPWASRTAETMLEDANRSVLMAGLESGKFTPLSGGGVVYLTTISADGKGLGKVFMQRQK 180

Query: 181 TQTHKIYYAQSGSIDLD---RQAIILNDGEVHRK--SPISKDISIMKFKSYTLQTESANS 235
                +  A+ G++  +    + + L DG       +  + D  +MKF S  +     + 
Sbjct: 181 DDRIDVVTAERGAMFFEGKANRYLRLEDGYRIEGPAAGNTLDYRLMKFASNDVALPDRSQ 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                       + LL+          +     R++ H+RL   L  + F L+++  +  
Sbjct: 241 VHDANDPEVMWTTQLLS----------DERPAARAQLHERLAPPLLALAFALLTLPLSRS 290

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
               ++  +I   F++  +   +    +  I   +                 +I+  
Sbjct: 291 APRQQRYGRIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAIWAY 347


>gi|319956049|ref|YP_004167312.1| permease yjgp/yjgq family protein [Nitratifractor salsuginis DSM
           16511]
 gi|319418453|gb|ADV45563.1| permease YjgP/YjgQ family protein [Nitratifractor salsuginis DSM
           16511]
          Length = 372

 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/361 (10%), Positives = 99/361 (27%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K   LYI R   ++FL+  + +      I  LQ+   +       N  +  + Y    ++
Sbjct: 5   KRTFLYIARHYLKNFLILLIGLSLAVVFIDFLQQAQRLHGG---ANRKILYAFYTWEYMV 61

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P    M       S       + + + G  R  ++ P L   +L+ +     +   
Sbjct: 62  ALIYPLVILMAMAWTQISFIYRNVFVSLFSFGFGRRQILIPFLASGVLIYLVFTGLQMTS 121

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
               +   + +    +     +    NLFF+ +D           +  L    I + +  
Sbjct: 122 FAYGQDRARMILHADRYKDALN----NLFFKYNDSFVYASRLDPLHKALLRGMIFEVKKN 177

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           Q  +                        R     +       +   +         +  K
Sbjct: 178 QVVRTLRFDEARFHDGEWIAPRALVRSKRFDTEGELTGFEDKELKNMILLKGYRPKVFRK 237

Query: 242 ANDQNLSFLLN--PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             +     L++     +    +    +  ++  + ++   LF +   +I           
Sbjct: 238 IYEGGTFSLVDSLAALHLLKKQGLSADKVKAILYNKVLTPLFALAMMVI--FFYRTPLYH 295

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
           R  +K       L  +   +     +            +       I  ++   + ++  
Sbjct: 296 RFVRKEQLWTALLGSALLTWALLFALFRLGMNGVIDPDLGQTLPILILILYAWRLDRRIR 355

Query: 360 K 360
           +
Sbjct: 356 R 356


>gi|330836570|ref|YP_004411211.1| permease YjgP/YjgQ family protein [Spirochaeta coccoides DSM 17374]
 gi|329748473|gb|AEC01829.1| permease YjgP/YjgQ family protein [Spirochaeta coccoides DSM 17374]
          Length = 427

 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 62/422 (14%), Positives = 138/422 (32%), Gaps = 71/422 (16%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                YI++    SF ++  F  FI +V QIL  I  V     S+  +L +    IP  L
Sbjct: 8   TLLRKYIVKEFLASFAVAFTFFFFIFFVNQILLLIQRVMVKNVSVADMLTLVVLSIPQFL 67

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF      + V+   + + E++ + ++G     +  PVL + I+LS+  FI  +++
Sbjct: 68  IYTFPFSSLSAASMVIGEFSAHNEIIAMRSSGIPYRRIFSPVLVIGIVLSLLTFIVADML 127

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      ++   +    +    +       + D +    +    +N +  I + D+++T
Sbjct: 128 LPFSSVRYQKEYREIMQKIPTLDVASYSSVTVGDKIIT--AGRVEDNIIHDIILFDAKET 185

Query: 182 QTHKIYYAQSGSIDLDRQAIILND--------GEVHRKSPISKDISIMKFKSYTLQTESA 233
              +   A+ G+I       +            EV    P S  +S  +    ++     
Sbjct: 186 AEPRTISARQGTIFPGISQNLTYRLELENPVVLEVSSTDPSSWSLSSARTARLSVDFIDQ 245

Query: 234 NSSTIVLKANDQNLSFLLNP---------------------------------------- 253
           + +   L     +   L++                                         
Sbjct: 246 SGALATLTPAQMSSRDLISAIEVRKQKINEQKQENLRLQNSLADELASVKAKAEDTDNGT 305

Query: 254 -------NPNNPNYRPELLETYRS----------EFHKRLTQWLFPVIFGLISIVAADKR 296
                  N      +   L+ Y+           E HK+L          L ++  +   
Sbjct: 306 EKERLKTNARQLEQKITSLKNYKIEDFYYTYYRAELHKKLALSAACFCLILTALPISF-- 363

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMIK 355
            +  +  ++    +SL I+   ++   ++  KI    +     ++     + +I L  + 
Sbjct: 364 -IKVRHGRLIGFGLSLLIACVYWFILFFMQLKIFDVSFSPGWLMWFPDVLVLAIGLAFLS 422

Query: 356 KK 357
           ++
Sbjct: 423 RQ 424


>gi|183221200|ref|YP_001839196.1| putative permease [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189911291|ref|YP_001962846.1| permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775967|gb|ABZ94268.1| Permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779622|gb|ABZ97920.1| Putative permease; putative membrane protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 530

 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 53/166 (31%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
               +YIL+ I   FL++  F   I   + I + I L          LL   GY+    L
Sbjct: 38  SILRIYILKEILSPFLVALSFFTMIYMAVAIQKMIGLFVGKGVDFFRLLDYMGYVFGNTL 97

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    M        ++ ++E+  +  +G S   +    L    L+++ +      +
Sbjct: 98  PMTIPMACLMSGIMAAGRLSGDSEITAMRASGVSFPYIYSNFLVFGFLMTLIVGYLNFYL 157

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN 167
            P+    +K              ++   F       +         
Sbjct: 158 GPENTRKMKDFDNWIATYNPLLAIQPGQFSGDKTQDFFSEKGRTMY 203



 Score = 53.9 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 34/106 (32%)

Query: 250 LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIF 309
           L        N   + L  +  E HKR    L   IF  +S           +        
Sbjct: 387 LFTQLSELLNESKKTLTGFNVEIHKRFATPLSCQIFFFLSFPLGLVVKRSGKGMSFTLAV 446

Query: 310 ISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           + L I +  F   S I +K     +  P     +    SI++++ +
Sbjct: 447 VFLLIYYTFFIFGSGISYKENVPDWVGPWSANIVIATLSIYIMISR 492


>gi|283780133|ref|YP_003370888.1| permease [Pirellula staleyi DSM 6068]
 gi|283438586|gb|ADB17028.1| permease YjgP/YjgQ family protein [Pirellula staleyi DSM 6068]
          Length = 386

 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/380 (11%), Positives = 99/380 (26%), Gaps = 39/380 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES-----LNILLKISGY 55
           M + + Y+L    R  L+  + +  +  VI  L  ++  S+  E      L ++ +    
Sbjct: 1   MTTIDRYVLTIFIRVLLICFVSLAGLFVVIDCLGNLDEFSNYGEKHAGGILGVIFEYYSA 60

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
            +             +     +T + R  EL  +   G S    ++ V   A ++++   
Sbjct: 61  HVLGFFDRTIGLLAMVAAIFTVTWLQRTQELTALAAAGISPARAMRSVFIAAGIVALLGA 120

Query: 116 ISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
            +     P+ R+ + + +       +  ++ +                           +
Sbjct: 121 ANREFNLPQMRAKLGRNAQDWLGENSRRFVPKFDMRSDILISGASTVAKEQKIVAPNFLL 180

Query: 176 VDSRDTQTHKIYYAQSGSID----------LDRQAIILNDGEVHRKSPISKDISIMKFKS 225
            D R  Q      +   +I            +  +  L  G     +        +  + 
Sbjct: 181 PDDRTEQLPVELVSWGRAIQAREALYQPATDEHPSGYLMRGVTQPLAVAQLSSVSLHNEP 240

Query: 226 YTLQ-----------------TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETY 268
             L                        +         +   L+           +     
Sbjct: 241 TILAPRDHRWLAPDECFVSSVVTFEQLAASNAWRQYLSTYELVTGLKT---RTIQPGADI 297

Query: 269 RSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
           +   H RL Q L      +  +       L +  + I        +  G F+      H 
Sbjct: 298 KVTLHARLVQPL----LDMTLLFLGLPLVLTKGNRNIFLAAAICLLLVGSFFIVVMTCHS 353

Query: 329 IEQNPYYIPILYLFLFCISS 348
           +  N    P +  +L  +  
Sbjct: 354 LGSNYLLSPTMAAWLPLLIF 373


>gi|32473921|ref|NP_866915.1| permease [Rhodopirellula baltica SH 1]
 gi|32444458|emb|CAD74456.1| conserved hypothetical protein-putative permease [Rhodopirellula
           baltica SH 1]
 gi|327542994|gb|EGF29442.1| permease YjgP/YjgQ family protein [Rhodopirellula baltica WH47]
          Length = 398

 Score = 65.8 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/398 (12%), Positives = 120/398 (30%), Gaps = 50/398 (12%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                 IL  I R F+++ + +  +  +I + + +            +L++  + IP  L
Sbjct: 4   TRLTRTILFEILRIFVVALVVLTLLILLIAVGREL---FRKGLGAMAVLQLLPFAIPISL 60

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P         V   M  + E+  +  +G S + L++P +  A LLS       ++ 
Sbjct: 61  QHAVPATALFSVCCVYGRMAADGEISTVKASGISPLRLLQPAIVFAALLSPVAVYCSDMA 120

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
               +  +K++   +   + +  LE +  +  D    I + + +    +     V  +  
Sbjct: 121 VSWGKPGVKRVVLLSIEDIAYRLLERDHSYTSDHGFSIHVREIDGRRMISPRVTVRGKGD 180

Query: 182 QTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                  A  G + +D ++    + L D +V R   +  D          +      +  
Sbjct: 181 DAFT-VTASEGQLMMDEESLSLVLKLVDSQVIRGKGLQGDFYGEHQFEIPIGNALEETDV 239

Query: 238 IVLKANDQNLSFLLNP--------------------------------------NPNNPN 259
                ++  L  + N                                         ++  
Sbjct: 240 STRSPSELPLRLIRNERLRQRERTHAKIGELAAFTGFSLLTSRPAEIGGEKSSAIQSSLQ 299

Query: 260 YRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
                L   ++E  +R  +      F L+    A                +    +  V+
Sbjct: 300 SSRHRLTRLQTEPWRRWAEGFTCFFFVLVGAPLAIVAKTSDY---WTTFGMCFLPTILVY 356

Query: 320 WGFSYIIHKIEQNPYYIP-ILYLFLFCISSIFLLMIKK 356
           +    +     +     P  +++    +S + +++I +
Sbjct: 357 YPLYLLGLDQAKAGDMPPYGVWIGNVVLSGVGMMLIAR 394


>gi|154174487|ref|YP_001408138.1| permease YjgP/YjgQ [Campylobacter curvus 525.92]
 gi|153793102|gb|EAU00183.2| permease YjgP/YjgQ [Campylobacter curvus 525.92]
          Length = 342

 Score = 65.4 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 108/360 (30%), Gaps = 20/360 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+L     +F      +  I  ++  +Q   + S    +   LLK+  +++P V
Sbjct: 1   MSRVNKYLLYNFLGTFASLFSTLFLIMSIVFFIQIARVTSYIEITFGELLKLYMFMLPRV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P  F +     L  +++  E ++I   G+S  ++ K  L  +  LS  L I   +
Sbjct: 61  LLFVVPIAFFVALAMTLFRLSKENESIVIFTLGSSPNSIAKFFLAFSAALSALLLIVAIV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI--KISKYNPNNTLQGIFIVDS 178
           + P             +     +        +  D +               + I + + 
Sbjct: 121 MIPIASELNSNFIDYKKTVAKLNLKPTQFGQKFSDWMVYVGSEGSDENGTIYKNIVMFNP 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
               + ++  AQ+  +   +  I L+           K      FKS T++T  +     
Sbjct: 181 FIKDSQRLIVAQNAKMINTKSNIELSLNNGKIYDMRGKVYHQSNFKSMTIRTAQSEKIND 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V    +  L               +     + +    +   LFP+   L +I        
Sbjct: 241 VDSIKEYWL-------------EAKTSTKRKKDLSTYVLVALFPLATTLFAISFGIVTYR 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +       F  L   F +    S              +   F       +   I ++Y
Sbjct: 288 YEKGAVYLGTFGILFGYFTLIMLLS-----PRPIIAIPGVFAAFFAAGVWFYKFKIMRRY 342


>gi|83816098|ref|YP_446193.1| hypothetical protein SRU_2087 [Salinibacter ruber DSM 13855]
 gi|83757492|gb|ABC45605.1| membrane protein, putative [Salinibacter ruber DSM 13855]
          Length = 473

 Score = 65.4 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 107/289 (37%), Gaps = 14/289 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++     +LR +   F      ++F+  +  +++ +  ++     +++++++  Y +  +
Sbjct: 2   LRRLHWIVLRRLPGPFFGWLGTLMFLLLMQFLIRWLPEIAGKGIPVSVIVELIAYNLAYM 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +        +  +    +I +TG S   ++ P L +A LL   +    N+
Sbjct: 62  VVLAVPMSVLLAALMAFGELAESQYYTVIKSTGISFGQIVWPALVVAALLMGGMLYFNNV 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+     +QL +  +       L   +F+   +D  I +    P         +    
Sbjct: 122 MLPEANHRARQLWSDIRGKRPGFELRPGIFYEDMEDYSILVQDRPPGTNKLIDVTIYDYT 181

Query: 181 TQTHKI--YYAQSGSIDLD----RQAIILNDGEVHRK-----SPISKDISIMKFKSYTLQ 229
               +     A+ G I+      R  + L +GE+HR      +  S+    + F  + ++
Sbjct: 182 QGRDRQAVIKAERGVIESSAGGARLTLTLRNGEMHRPLPPDANNQSERYERLTFDRHRIR 241

Query: 230 TESANSSTIVLKAND--QNLSFLLNPNPNNPNYRPELLETYR-SEFHKR 275
              +N      ++ +  ++   +  P   +     +     R    ++R
Sbjct: 242 FTLSNVVFRRSESEETARSTRTMRTPRLLDTLDSLKTERDARYQTLYER 290



 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           +     +  ++   + +Y+ EF+K+ +  L  +IF ++            +R  +  I  
Sbjct: 346 IQNIRRDTEWQTRRIRSYQVEFYKKFSIALACLIFMVVGAPLGLAL----RRGGLATIGA 401

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLLMI 354
                F ++W       K+ +  ++ P   +++    +S   L +I
Sbjct: 402 VALGIFMLYWITLVQGEKLSERGFFPPWLGMWIANLLMSGAGLWLI 447


>gi|291279034|ref|YP_003495869.1| hypothetical protein DEFDS_0632 [Deferribacter desulfuricans SSM1]
 gi|290753736|dbj|BAI80113.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 360

 Score = 65.4 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 118/359 (32%), Gaps = 3/359 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F  Y+++    S +   +FI+ I    Q++Q    +S        +L      IP  
Sbjct: 1   MKKFNKYLIKSYLNSLVAILIFILIIYTFFQVVQHTKYISRYNTPFLNILIYDLMKIPYS 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P   +      +  + +N EL+   + G     +    L +  L  + L    + 
Sbjct: 61  IYQVFPVATSAAIVVTMLKLIKNNELIAYLSFGGRLRQIAVLFLSVNFLFFLILLYYSDA 120

Query: 121 IEPKCRS-TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           I PK      K    K         L    F+  D +  I I   N +        +  +
Sbjct: 121 INPKIEKIRAKYKDEKIFFQKHTEKLTVTDFYFKDKESIISIDLINFDKKEFDGVTIYEK 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D  T  I      +  L        D ++     I   + I        +  +       
Sbjct: 181 DKDTISIVKRAKKAKYLGNNIWEFQDFKIFDVKKIPTLLKIYDKYKLKSKILTKFIKIKP 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +    +   L +        +    E++R  ++ ++   L  ++  ++ +      +  
Sbjct: 241 DEPKKLSFKEL-SRVIKVYESKGLSAESFRLIYYNKIAVPLILIVLTILLLPLTITISRS 299

Query: 300 RQRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            Q  K+    +S++I F   +  F  +      NP+        LF I  + +L+ K++
Sbjct: 300 YQYIKVAAKSLSVTIIFWVSYSVFYSLGKNGVINPFLANFSLHILFFIFGMIILLSKER 358


>gi|78777193|ref|YP_393508.1| permease YjgP/YjgQ [Sulfurimonas denitrificans DSM 1251]
 gi|78497733|gb|ABB44273.1| permease YjgP/YjgQ [Sulfurimonas denitrificans DSM 1251]
          Length = 339

 Score = 65.4 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 124/358 (34%), Gaps = 19/358 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI   +   FL   L +  IA ++ +++     +    ++  + K+  +++P +
Sbjct: 1   MKIVQNYIRESVSILFLSIFLPLFSIASIVFLIKLATYTAVIQLTIFEMAKLFFFMLPEL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  ++ + E++++   G     +IK VL  A+ L   L  +  +
Sbjct: 61  LFYTLPISFFVAITLALFKLSNDNEIVVLFALGIRPKLIIKTVLKPALFLCAILLFNFFV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  ++      +  +    F+        +  + L       +  N      I+ ++ 
Sbjct: 121 LFPHAKTLSSNFISYKKSEAKFNLSASEFGHKFGEWLLYI--GKDNQNETYSDVILFNKK 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +  A++  I  D   + L        S   +  + + F++  +            
Sbjct: 179 QDEEVLIRAKNAQIINDSGILRLKLTSGEGYSYSDEKFTQINFETMFINDTMKTDLDKYE 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              +  L                     R      +   LFPV+   ++       A  +
Sbjct: 239 TPMEYWLPE-------------APSSKKRKMLISNILFSLFPVLSIFLAATIGIVHARHQ 285

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
           + K    +F+ + +    ++  +  +  I  +   + + + +L     ++  +I  K+
Sbjct: 286 KGKIYLFMFLGIIL----YYTLAVTLQLIIGSYALLVLAFGWLLGTYILYKKIIVAKF 339


>gi|289663727|ref|ZP_06485308.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 360

 Score = 65.0 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 126/357 (35%), Gaps = 15/357 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + + + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPKRMLRPMLMLVVPVVVVIGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T + +   A  ++  + LE   F  L     + +   + +    G   +  + 
Sbjct: 121 LGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSGGGVVYMQTISADGKGLGKVFMQRQQ 180

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESANS 235
                +  A  G++       + + L+DG            D  +MKF S  +       
Sbjct: 181 NDRINVVTADRGAMFFEGKTDRYLRLDDGYRTEGPAGGATLDYRLMKFASSDIALPDRTR 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                       + LL+          +   T R++ H+RL   L  + F L+++  +  
Sbjct: 241 VHDANDPEVMWTTQLLS----------DERPTARAQLHERLAPPLLALAFALLTLPLSRS 290

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
               ++  +I   F++  +   +    +  I   +                 +++  
Sbjct: 291 APRQQRYGRIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVWAY 347


>gi|167856193|ref|ZP_02478930.1| hypothetical protein HPS_08256 [Haemophilus parasuis 29755]
 gi|167852682|gb|EDS23959.1| hypothetical protein HPS_08256 [Haemophilus parasuis 29755]
          Length = 308

 Score = 65.0 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 96/297 (32%), Gaps = 15/297 (5%)

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +  ++ P    +     L      +E+ ++   G  +  L+K  LFL+I  +     +  
Sbjct: 1   MAQLMLPLSLFIALLLTLGRFYAESEITVMRACGVGQSLLVKAALFLSIFTTAVAVYNVF 60

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P   +   ++ A+A+    F+ L    F      +    +  +       +F  + +
Sbjct: 61  WLTPWAINKQSEMLAEAKANPRFAALAAGQFMSAGGYVLFIDNIKDNTINDIYVFQPEQQ 120

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 +  A+SG +       Q + L +   +  +P + D  I  F +Y       +  
Sbjct: 121 KKNKPSVVVAKSGELQGLPNGDQMLNLTNSTRYEGTPQTADFRISHFDNYNAYLGYQDVD 180

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +        +   LL+                ++E   RL   L   +  L+++  +   
Sbjct: 181 SDEKLVQRADFQKLLSE----------TSPEAQAELQWRLALILSVPLMALLAVPMSSVN 230

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
               +  K+ P  +   I F +           + N     ++ +       +  L+
Sbjct: 231 PRQGRFAKLLPALLLYLIYFLLQSSLKSAGASGKLNVSL--LMPMVSVAFLVLGTLL 285


>gi|148651872|ref|YP_001278965.1| permease YjgP/YjgQ family protein [Psychrobacter sp. PRwf-1]
 gi|148570956|gb|ABQ93015.1| permease YjgP/YjgQ family protein [Psychrobacter sp. PRwf-1]
          Length = 449

 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/384 (8%), Positives = 93/384 (24%), Gaps = 33/384 (8%)

Query: 3   SFEL--YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
            F    Y L+            +V +  +    + I ++ ++  S+  ++          
Sbjct: 69  IFYRSPYFLQQFM-PTGALLGAVVGLGLLANNSELI-VMRAAGLSIYRIVGWVLQPAFIF 126

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +       +   + + +         +  +     TL                +S   
Sbjct: 127 VILALLINQFILPQSNVKASQIRKPDTALLASVNGYWTLQNAPTEAGSTTDNKEGLSSEQ 186

Query: 121 I----------EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL 170
                             +K+    A   LT         +                +  
Sbjct: 187 AHNIIFIDYADANGNIGEVKRWHLDADNNLTAVSKATGGTYVPSLQQGQDKPVVAAQDQS 246

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDL-----DRQAIILNDGEVHRKSPISKDISIM---- 221
             +     +      +  A   +I       ++ A  L D +           ++     
Sbjct: 247 DSLANYQWQLDNVTTLKVADKAAILESDTLGNQPAAQLTDTQATSVDSDQSGQAMALTSQ 306

Query: 222 --------KFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFH 273
                         L    ++   +  +A D +L+ L      N +     L  +   F 
Sbjct: 307 PLVAKQAESTDVINLPISPSSVYLLTRRAEDLSLTQLYEHKRFNASQGTRSL-EHEVAFW 365

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
           ++L      +   +++                  + I   + F      +  +      P
Sbjct: 366 QKLLSPFSVLSLVIVACSFVFGSLRTHSLGLRIVVAIIFGLLFSYIQDLTSFVSLATGAP 425

Query: 334 YYIPILYLFLFCISSIFLLMIKKK 357
             + ++ L +     +   +I+++
Sbjct: 426 PLL-MVLLPIIGSGLLGFYLIRRQ 448



 Score = 59.2 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 1/198 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ +    + L + L +  +  V   L  +  + S   +    L    Y  P  L
Sbjct: 19  RIISRYVKKNALFAMLFAVLGLWALQMVFAYLAELEDI-SDAYTYVDALTYIFYRSPYFL 77

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     L  +  N+EL+++   G S   ++  VL  A +  I   +    I
Sbjct: 78  QQFMPTGALLGAVVGLGLLANNSELIVMRAAGLSIYRIVGWVLQPAFIFVILALLINQFI 137

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+      Q+       L        L     +      +K   ++      I      
Sbjct: 138 LPQSNVKASQIRKPDTALLASVNGYWTLQNAPTEAGSTTDNKEGLSSEQAHNIIFIDYAD 197

Query: 182 QTHKIYYAQSGSIDLDRQ 199
               I   +   +D D  
Sbjct: 198 ANGNIGEVKRWHLDADNN 215


>gi|85374865|ref|YP_458927.1| permease [Erythrobacter litoralis HTCC2594]
 gi|84787948|gb|ABC64130.1| predicted permease [Erythrobacter litoralis HTCC2594]
          Length = 437

 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 124/359 (34%), Gaps = 11/359 (3%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R      +   +    +  + ++L+  + V+     + ++ K+ G LIP    +
Sbjct: 32  IDRYIFRLTIVPMMAVFVLAASLLLLDKMLRLFDFVAVEGGPIGVVFKMLGALIPEYASL 91

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +        +  ++EL ++   G     L++    +  +L          I+P
Sbjct: 92  AIPLGLLLGILFAFRKLATSSELDVLRAVGMGYGRLLRVPYIITAILVAVNVALVFYIQP 151

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDTQ 182
             R   +QL  + +     + ++   F  L D + ++I +   N   L+GIF   S D  
Sbjct: 152 ISRYYYEQLEYELRSGALGASIKVGEFTTLADRMALRIEESEDNGRNLKGIFARVSNDKG 211

Query: 183 THKIYYAQSGSI-----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                 A+ GS        D   + L DG + +    ++   ++ F  + L  +      
Sbjct: 212 QVLSISAREGSFLATTDSSDTIILRLTDGTIVQ-DTGNQTPRVLSFTRHDLPIDLPAIEQ 270

Query: 238 IVLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              +     +  L  LL+   ++     +  +  ++ F+ RL + +   +  L+++  A 
Sbjct: 271 FRQRGDAEREYILPELLSIGWSDTESEAK-RDASQASFNFRLVEVVMMWLLPLLALSLAI 329

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                     +    + +     V      +      +P         LF    +++  
Sbjct: 330 PPKRSTSALGVFVSIVMVVSYHKVNQYGEDVAALGRVDPIVALWGPFVLFAALILWMFW 388


>gi|166713424|ref|ZP_02244631.1| hypothetical protein Xoryp_18795 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 360

 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 125/357 (35%), Gaps = 15/357 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + + + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPTRMLRPLLMLVVPVVVIIGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T + +   A  ++  + LE   F  L     + +   + +    G   +  + 
Sbjct: 121 LGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSGGGVVYMQTISADGKGLGKVFMQRQQ 180

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESANS 235
                +  A  G++       + + L+DG            D  +MKF S  +       
Sbjct: 181 NDRIDVVTADRGALFFEGKTDRYLRLDDGYRTEGPAGGATLDYRLMKFASSDIALPDRTR 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                       + LL+          +     R++ H+RL   L  + F L+++  +  
Sbjct: 241 LHDGNDPEVMWTTQLLS----------DERPAARAQLHERLAPPLLALAFALLTLPLSRS 290

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
               ++  +I   F++  +   +    +  I   +                 +++  
Sbjct: 291 APRQQRYGRIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVWAY 347


>gi|78049236|ref|YP_365411.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325925501|ref|ZP_08186892.1| putative permease [Xanthomonas perforans 91-118]
 gi|78037666|emb|CAJ25411.1| putative YjgP/YjgQ family permease [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325544093|gb|EGD15485.1| putative permease [Xanthomonas perforans 91-118]
          Length = 360

 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 127/357 (35%), Gaps = 15/357 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + + + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRMLRPMLMLVVPVVVVIGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T + +   A  ++  + LE   F  L     + +   + +    G   +  + 
Sbjct: 121 LGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSGGGVVYLQTISADGKGLGKVFMQRQQ 180

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRK--SPISKDISIMKFKSYTLQTESANS 235
                +  A  G++       + + L+DG       S  + D  +MKF S  +       
Sbjct: 181 NDRIDVVTADRGAMFFEGKTDRYLRLDDGYRTEGPASGATLDYRLMKFASSDIALPDRTR 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                       + LL+          +     R++ H+RL   L  + F L+++  +  
Sbjct: 241 VHDANDPEVMWTTQLLS----------DERPAARAQLHERLAPPLLALAFALLTLPLSRS 290

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
               ++  +I   F++  +   +    +  I   +                 +++  
Sbjct: 291 APRQQRYGRIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVWAY 347


>gi|222823976|ref|YP_002575550.1| permease, YjgP/YjgQ family [Campylobacter lari RM2100]
 gi|222539198|gb|ACM64299.1| putative permease, YjgP/YjgQ family [Campylobacter lari RM2100]
          Length = 341

 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 111/363 (30%), Gaps = 26/363 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+      + L     +  I  ++  +Q   + S    SL  L ++  YL+P  
Sbjct: 1   MKLIYKYLFNQFLNTMLSLFFTLFTIVSIVFFIQLAKITSYVEISLLELFQLYIYLLPKA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T     ++R  E  ++   G S   +    + +A +LS F+ +   +
Sbjct: 61  LAFTLPISFFIALTLSFYRLSRENESTVLFALGISPKFIASFFMKIAGVLSAFMLVVVLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P             +++   +        R  + L    ++   N     I     ++
Sbjct: 121 FIPISFELFDNFVDYKKISTKINIKTGEFGQRYGEWLVFINTQDENNVYKNIIMYHPKKN 180

Query: 181 TQTHKIYYAQSGSIDLDRQ---AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +     S     ++    + +LN G+ +     +  IS  K      +  S + +T
Sbjct: 181 EDDKEQIILASEGKLENQNGIVSFVLNQGKAYEFKEENWHISSFKNLLIKSKLYSKDLNT 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   +L+           Y                   LFP+   L ++       
Sbjct: 241 KHFYDYWSDLNTSKEKAKEFVIYT---------------LIALFPLASVLFALSFGIVTY 285

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              +      IF  +   F +   F          P  + +  +F+  +S       KK 
Sbjct: 286 RYEKGFAYFGIFAVIFAYFTLLVSFY--------KPPLLAVGVIFILFLSISAFYFKKKI 337

Query: 358 YTK 360
            +K
Sbjct: 338 LSK 340


>gi|163756953|ref|ZP_02164060.1| putative permease [Kordia algicida OT-1]
 gi|161323072|gb|EDP94414.1| putative permease [Kordia algicida OT-1]
          Length = 639

 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 83/242 (34%), Gaps = 13/242 (5%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           + I  +  +   I  ++       ++ K   Y  P ++P+V P    + +         +
Sbjct: 1   MCIFILQTVWLFIGELAGKGLDAGVIFKFLLYTTPKLIPLVLPLSILVSSIMTFGRFAES 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   + +TG S    ++ ++   ++L +  F   N + P        L           
Sbjct: 61  YEFAAMKSTGISLQRAMRSLIIFIVILGVGTFFFSNSVIPWSEFKQYNLRKNLAKKKPAL 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI------DLD 197
            + E +F  + +      +KY  N+ L    I+  +          +S         D D
Sbjct: 121 AIGEGVFNDIGNINIKVDNKYGDNDQLLDKVIIHQKSNDKKNRIVMKSKKGELKSSPDSD 180

Query: 198 RQAIILNDGEVHRKSPISKDISIMK-------FKSYTLQTESANSSTIVLKANDQNLSFL 250
              ++L DG  +     +   S+++       F  Y +  +  + + + L A D N   +
Sbjct: 181 ILQMVLFDGNRYEDVKSNDPKSVLRMQHAKVSFDKYIMNVDLRDINKVDLDATDYNTYKM 240

Query: 251 LN 252
            N
Sbjct: 241 FN 242


>gi|288925668|ref|ZP_06419600.1| putative permease [Prevotella buccae D17]
 gi|288337606|gb|EFC75960.1| putative permease [Prevotella buccae D17]
          Length = 638

 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 82/222 (36%), Gaps = 2/222 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  F+ +     F+  +  + + I+ +     S+ +L +   Y+   ++
Sbjct: 5   KKLDIFIAKQFGLLFVGTFFICQFVLMMQFLWRYIDELIGKGLSMEVLAQFFWYMSLMLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I   G S +   + ++F+ +++    F  +N I
Sbjct: 65  PQALPLAILLSSLITFGNLGESSELTAIKAAGISLMQTFRSLIFITVVVMGCSFYFQNNI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN--NTLQGIFIVDSR 179
            P+    I QL    +       + E +F+    +  + + K N         +    + 
Sbjct: 125 GPQANMKITQLLISMKQKSPELEIPEGIFYDGIPNCNLYVQKKNVKTGKLYGIMIYRMTN 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM 221
             +   I  A SG +    +   L       +   +     +
Sbjct: 185 SYEDAAIILADSGMLQSTAEKKHLVLTLWSGEWFENMQSQEL 226



 Score = 37.7 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
              ++  +  E   + T     +IF  I    A   A++R+     P+ +S+ + F V++
Sbjct: 364 GDRIIRQHEIEAINKFTLAFSCLIFFFIG---APLGAIIRKGGLGVPVIVSV-LVFIVYY 419

Query: 321 GFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
                 +++ +   +       L    +  +   +  K
Sbjct: 420 ILDNTGYRMARGGMWAVWFGKGLAPAVLIPLAAFVTYK 457


>gi|30468062|ref|NP_848949.1| probable permease YjgP/YjgQ family [Cyanidioschyzon merolae strain
           10D]
 gi|30409162|dbj|BAC76111.1| probable permease YjgP/YjgQ family [Cyanidioschyzon merolae strain
           10D]
          Length = 329

 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/352 (10%), Positives = 92/352 (26%), Gaps = 31/352 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  FE YI   +   FL +    + + +    L  +    +   SL++  +I    +   
Sbjct: 1   MTIFEQYIWSHLWTPFLYALSACLALTFSAGALVDVMRQITQGLSLDMACQILCLQLVLS 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P                N +L+ +  +G      +KP L    ++    +     
Sbjct: 61  IHLGLPASCVFGGIFA----YANLDLMALRTSGIGVARWLKPSLIFGCMVGWLAWQWNEW 116

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P    ++ +L  + Q                   +     K       + + +     
Sbjct: 117 ALPLANYSLHKLQDQIQN-----------QITSKALVNQINHKLIYVKEWKPLHMNHCVM 165

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             +       +  ID D    I      ++     +             T   +      
Sbjct: 166 WDSEMNQLWMAKQIDWDGARWIAKQVVHYQWDDQFQLQLQSHVAKMEWPTAWISQQQWQP 225

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              +      L        +   +   Y    +++    +   +  LI    A       
Sbjct: 226 MWMNVQT---LKCYKQVAEFNKHIAIRY----YQKYAFPISCGLLHLIGSSLASVSKKG- 277

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                   FI   I    ++ F +    + ++     ++  ++      F+L
Sbjct: 278 --------FILSLIVLFGYYLFGFGCEALAESSQMSALMAGWMPVAGLFFVL 321


>gi|154491977|ref|ZP_02031603.1| hypothetical protein PARMER_01608 [Parabacteroides merdae ATCC
           43184]
 gi|154088218|gb|EDN87263.1| hypothetical protein PARMER_01608 [Parabacteroides merdae ATCC
           43184]
          Length = 655

 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 72/184 (39%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    ++L+     FLM+    +FI  +  + + I+ +      + +L ++  Y    ++
Sbjct: 5   KRLYTFMLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +     ++    ELL + + G S + +++P++    ++SI  F  +N  
Sbjct: 65  PMALPLAILLASLMTFGNLGERLELLAMKSAGVSLVHIMRPLIITISIISIGAFFFQNYA 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +  +  L    +       + E +F+       + +   +    L    ++     
Sbjct: 125 MPVVQVKLYTLLWSMRQKSPELDIPEGVFYSEITGFNVYVKHKDTETGLLRDMMIYDYSE 184

Query: 182 QTHK 185
             +K
Sbjct: 185 GFNK 188



 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 86/293 (29%), Gaps = 6/293 (2%)

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +  +  L +      L++    G S  +L K         S+              
Sbjct: 189 VSVMVADSGRLKTSADKMFLVLSLFNGESFRSLDKQPSTAGTKSSVPYQRETFKSRDILI 248

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
                 S   +  +   ++ +N+         + +   +  N         S      K 
Sbjct: 249 EFDANFSRTDESFMQNQFMGKNMHDLQIFIDSVSVRLDSIQNVNAKNVYETSYKKTLKKP 308

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI--VLKAND 244
              +  ++  D  +   +           + + +M F S          +TI    K++ 
Sbjct: 309 QDIKQNNVKDDSNSEKSDTKTTLETPKTDEPVIVMNFDSLYQAENPGKKATILTRAKSSI 368

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
           +N+                 +  + +E+HK+ T     ++F  I    A   A++R+   
Sbjct: 369 ENMKADYFFKAATIGDEAYRVRRHLTEWHKKFTLSFACMVFFFIG---APLGAIIRKGGL 425

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
             P+ IS+ +    +   +          +     ++L    ++ + + +  K
Sbjct: 426 GMPVVISVILFIFYYIIDNIGFKMARDGVWEAWQGMWLSSAILAPLGIFLTYK 478


>gi|303258296|ref|ZP_07344303.1| permease YjgP/YjgQ [Burkholderiales bacterium 1_1_47]
 gi|302859049|gb|EFL82133.1| permease YjgP/YjgQ [Burkholderiales bacterium 1_1_47]
          Length = 364

 Score = 64.3 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 110/343 (32%), Gaps = 22/343 (6%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
            +  I   I +++ +N  +        +L++  Y     LP +      +     L    
Sbjct: 1   MLFSIVVTIGLVRILNQTAGGRYDTGSILEVVAYTSLINLPALISLALFLAVFMTLNRYW 60

Query: 82  RNTELLIIDNTGT-SRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLAL 140
           R++E+ +  + G  S  + I+PVL  A+ + + +      + P  R+ ++    +     
Sbjct: 61  RDSEMFVWFSAGGLSLTSWIRPVLRFALPVVLVVAACSIAVSPWSRAQVQAYRDRFAQKE 120

Query: 141 TFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RDTQTHKIYYAQSGSI---D 195
             S L    F        +   +       +   ++    +   +  +  +  G I    
Sbjct: 121 DISKLSSGRFIEAKSGRQVFFLEGVDQEKGKVKTLLMVELKKDGSRSVLVSDRGHIENKP 180

Query: 196 LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST-IVLKANDQNLSFLLNPN 254
              + I+L+DG  +   P     S+  F+ Y ++ +S+ S      K N   +  L+   
Sbjct: 181 NGDRYIVLDDGRKYDTKPSGLGASVSDFREYEIRMDSSPSEVGANKKLNAMPIEDLI--- 237

Query: 255 PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI 314
                          SE   R++  L  +      ++A        +  K +    ++ I
Sbjct: 238 -------KRTDNRAASELFWRISWPLVALNLA---LLAIPLSYNNPRSMKYYGQTAAVLI 287

Query: 315 SFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIK 355
                   S     I   +       LY+ +        L  +
Sbjct: 288 FILYLNALSIFQTWITQGKVGILGATLYMNVPVAVLTTFLFYR 330


>gi|294664573|ref|ZP_06729915.1| YjgP/YjgQ family permease [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605657|gb|EFF48966.1| YjgP/YjgQ family permease [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 360

 Score = 64.3 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 127/357 (35%), Gaps = 15/357 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + + + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRMLRPMLMLVVPVVVVIGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T + +   A  ++  + LE   F  L     + +   + +    G   +  + 
Sbjct: 121 LGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSGGGVVYLQTISADGKGLGKVFMQRQQ 180

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRK--SPISKDISIMKFKSYTLQTESANS 235
                +  A  G++       + + L+DG       S  + D  +MKF S  +       
Sbjct: 181 NDRIDVVTADRGAMFFEGKTDRYLRLDDGYRTEGPASGATLDYRLMKFASSDIALPDRTR 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                       + LL+          +     R++ H+RL   L  + F L+++  +  
Sbjct: 241 VHDANDPEVMWTTQLLS----------DERPAARAQLHERLAPPLLALAFALLTLPLSRS 290

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
               ++  +I   F++  +   +    +  I   +                 +++  
Sbjct: 291 APRQQRYGRIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVWAY 347


>gi|21244280|ref|NP_643862.1| hypothetical protein XAC3555 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109928|gb|AAM38398.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 360

 Score = 64.3 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 127/357 (35%), Gaps = 15/357 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + + + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRMLRPMLMLVVPVVVVIGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T K +   A  ++  + LE   F  L     + +   + +    G   +  + 
Sbjct: 121 LGPWASRTAKAMLEDANRSVLMAGLESGQFTPLSGGGVVYLQTISADGKGLGKVFMQRQQ 180

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRK--SPISKDISIMKFKSYTLQTESANS 235
                +  A  G++       + + L+DG       S  + D  +MKF S  +       
Sbjct: 181 NDRIDVVTADRGAMFFEGKTDRYLRLDDGYRTEGPASGATLDYRLMKFASSDIALPDRTR 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                       + LL+          +     R++ H+RL   L  + F L+++  +  
Sbjct: 241 VHDANDPEVMWTTQLLS----------DERPAARAQLHERLAPPLLALAFALLTLPLSRS 290

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
               ++  +I   F++  +   +    +  I   +                 +++  
Sbjct: 291 APRQQRYGRIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVWAY 347


>gi|315606454|ref|ZP_07881469.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315251860|gb|EFU31834.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 638

 Score = 64.3 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 82/222 (36%), Gaps = 2/222 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  F+ +     F+  +  + + I+ +     S+ +L +   Y+   ++
Sbjct: 5   KKLDIFIAKQFGLLFVGTFFICQFVLMMQFLWRYIDELIGKGLSMEVLAQFFWYMSLMLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I   G S +   + ++F+ +++    F  +N I
Sbjct: 65  PQALPLAILLSSLITFGNLGESSELTAIKAAGISLMQTFRSLIFITVVVMGCSFYFQNNI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN--NTLQGIFIVDSR 179
            P+    I QL    +       + E +F+    +  + + K N         +    + 
Sbjct: 125 GPQANMKITQLLISMKQKSPELEIPEGIFYDGIPNCNLYVQKKNVKTGKLYGIMIYRMTN 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM 221
             +   I  A SG +    +   L       +   +     +
Sbjct: 185 SYEDAAIILADSGMLQSTAEKKHLVLTLWSGEWFENMQSQEL 226



 Score = 37.3 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
              ++  +  E   + T     +IF  I    A   A++R+     P+ +S+ + F V++
Sbjct: 364 GDRIIRQHEIEAINKFTLAFSCLIFFFIG---APLGAIIRKGGLGVPVIVSV-LVFIVYY 419

Query: 321 GFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
                 +++ +   +       L    +  +   +  K
Sbjct: 420 ILDNTGYRMARGGMWAVWFGKGLAPAVLIPLAAFVTYK 457


>gi|294625211|ref|ZP_06703852.1| YjgP/YjgQ family permease [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292600485|gb|EFF44581.1| YjgP/YjgQ family permease [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 360

 Score = 64.3 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 126/357 (35%), Gaps = 15/357 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + + + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRMLRPMLMLVVPVVVVIGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T   +   A  ++  + LE   F  L     + +   + +    G   +  + 
Sbjct: 121 LGPWASRTADAMLEDANRSVLMAGLESGQFTPLSGGGVVYLQTISADGKGLGKVFMQRQQ 180

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRK--SPISKDISIMKFKSYTLQTESANS 235
                +  A  G++       + + L+DG       S  + D  +MKF S  +       
Sbjct: 181 NDRIDVVTADRGAMFFEGKTDRYLRLDDGYRTEGPASGATLDYRLMKFASSDIALPDRTR 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                       + LL+          +     R++ H+RL   L  + F L+++  +  
Sbjct: 241 VHDANDPEVMWTTQLLS----------DERPAARAQLHERLAPPLLALAFALLTLPLSRS 290

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
               ++  +I   F++  +   +    +  I   +                 +++  
Sbjct: 291 APRQQRYGRIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVWTY 347


>gi|329943108|ref|ZP_08291882.1| hypothetical protein G5Q_0787 [Chlamydophila psittaci Cal10]
 gi|332287690|ref|YP_004422591.1| conserved hypothetical membrane protein [Chlamydophila psittaci
           6BC]
 gi|313848264|emb|CBY17265.1| conserved hypothetical membrane protein [Chlamydophila psittaci
           RD1]
 gi|325506627|gb|ADZ18265.1| conserved hypothetical membrane protein [Chlamydophila psittaci
           6BC]
 gi|328814655|gb|EGF84645.1| hypothetical protein G5Q_0787 [Chlamydophila psittaci Cal10]
 gi|328914943|gb|AEB55776.1| YjgP/YjgQ family protein [Chlamydophila psittaci 6BC]
          Length = 357

 Score = 64.3 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 119/362 (32%), Gaps = 16/362 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      ++    ++     L ++ I+ +  + + ++ ++        +L+++ Y IP +
Sbjct: 1   MPILWKVLIFRYLKTVTFCTLSLICISIISSLQEIVSYIA-KDVPYPTVLRLTAYQIPYL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP + P    +    +   ++ N ++  +  +G S+  +  PVL ++  +    F + + 
Sbjct: 60  LPFILPISCFISAFTLFRGLSDNNQITFLKASGASQAIITFPVLMVSCAICCVNFYTCSE 119

Query: 121 IEPKCRSTIKQLSAKAQLALTF---SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
           +   CR    +  A   +         L++    R+   +         N  +      +
Sbjct: 120 LASICRFQTCKEIANMAMTSPTLLLQTLQKKESNRIFITVDHCAKSKFDNVIIALKRDKE 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF-KSYTLQTESANSS 236
             +    K       +  +  + +++        +      S   + ++         +S
Sbjct: 180 IANVGLIKTIIPDVANDTVQARGVVMISKLPSTLTDQRSSNSKEYYIETLDEMLIPKITS 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T+    +         P       +     TY  E  +R+   L  +      +V    +
Sbjct: 240 TLFAGKSYMKTRTDYLPWKQ--LVKQSFSRTYLPETLRRIGIGLLCITLTYSGMVLGTYK 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R+   ++ IF  + +   +           +      P L LF+F     +++   K
Sbjct: 298 PRFRKSITLYCIFPVIDLILLI---------VGKNTSSLFPALMLFIFPQVVSWIVFAIK 348

Query: 357 KY 358
            Y
Sbjct: 349 AY 350


>gi|224534155|ref|ZP_03674735.1| permease, YjgP/YjgQ family [Borrelia spielmanii A14S]
 gi|224514580|gb|EEF84894.1| permease, YjgP/YjgQ family [Borrelia spielmanii A14S]
          Length = 355

 Score = 63.9 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 111/355 (31%), Gaps = 1/355 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +   ++ I  +FL   L  + +  +  +   +        S   +L I    +P    
Sbjct: 2   KIDKLFVKSIILTFLSMNLLFMILIMLGDLFVNLLNYLEKNISFKDILYIYYLYLPKAFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N++ +++   E++ + + G S   +++P++ +++ +S+ LF  +N + 
Sbjct: 62  DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVSLTRILRPIILISVFISVILFFFDNYLV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
               +    L   +      S     +     +   IK    + N     + I+     +
Sbjct: 122 IDTVAKRDLLIKNSVGNSGSSDKTIIIRDLAREIYNIKSYDIDENTFSNLMIIIKDSKDE 181

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
               Y         ++  +      V     I ++   +   +  ++ E     T++L +
Sbjct: 182 FQTRYDINKAKWKDNKWKLYGVREFVKVGRKIKENAYDVLDGTGIIKLEPDYIRTVMLSS 241

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              + + L+N   +              +   R+      ++        A         
Sbjct: 242 KALSFTKLVN-WISFLKSERLNYSDALFDLLNRVFFSFRLMLLSFTVGFIALALKKNIFI 300

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             +        +       FS++      N Y         F I + F+  I +K
Sbjct: 301 LSLLNSIAFAVVYVISIVIFSFLADLGYLNIYMASSFTTIFFLIINFFVYRIVRK 355


>gi|167752154|ref|ZP_02424281.1| hypothetical protein ALIPUT_00396 [Alistipes putredinis DSM 17216]
 gi|167660395|gb|EDS04525.1| hypothetical protein ALIPUT_00396 [Alistipes putredinis DSM 17216]
          Length = 492

 Score = 63.9 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 12/278 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+    +L+      +++   I+F+  +  + + I+ +         ++++  Y    +
Sbjct: 1   MKTIYKLVLKSYLGPMVLTFFIIMFVLMMNVLWRYIDELVGKGLDPGTIIELLCYATINM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    +     + ++  N ELL + + G S   +++P+L +  +L++  F   N 
Sbjct: 61  IPMALPLATLLAAIMTMGNLGENYELLAMKSAGMSLPKIMRPLLVVVSILAVGSFFIANN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P       +     +        ++ LFF   D + I++   N    L    ++    
Sbjct: 121 LVPYANKKFFRTIYDIRQMNQTLEFQDGLFFNGIDGMSIRVGHQNQETGLLTDVLIYDNR 180

Query: 181 T--QTHKIYYAQSGSIDLDRQAIILN----DGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                     A SG I L      L     +GE + ++  S                   
Sbjct: 181 NASGNMTTTVADSGYIRLSDDKRFLEITLFNGERYEQTRNSSQWYNKSSLQRNKFELQKA 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEF 272
           + +I      +  + L N      N + + +   + E 
Sbjct: 241 NISISGFEMQRTDADLFN------NAQTKNISELQYEI 272



 Score = 53.1 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 227 TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
           TL   S +       +  +N   + + + +        L   + E+HK+L   +  +IF 
Sbjct: 328 TLDLRSKDRIWSQAVSAARNSRSMFSFDESQAKNALNQLYRSKVEWHKKLALPVTIIIFF 387

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLF 344
           LI    A   A+VR+     PI IS+ I F +++  S    K+ +   +      +L  F
Sbjct: 388 LIG---APLGAIVRRGGLGMPIVISV-IFFVIYYIISSSGEKMAKEGTWEAFYGTWLSAF 443

Query: 345 CISSIFLLMIKK 356
            ++ + + +  K
Sbjct: 444 VLAPVAIYLTYK 455


>gi|62185346|ref|YP_220131.1| hypothetical protein CAB733 [Chlamydophila abortus S26/3]
 gi|62148413|emb|CAH64180.1| conserved hypothetical membrane protein [Chlamydophila abortus
           S26/3]
          Length = 357

 Score = 63.9 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/362 (11%), Positives = 116/362 (32%), Gaps = 16/362 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      ++    ++     L ++ I+ +  + + ++ ++        +L+++ Y IP +
Sbjct: 1   MPILWKVLIFRYLKTVTFCTLSLICISIISSLQEIVSYIA-KDVPYPTVLRLTAYQIPYL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP + P    +   ++   ++ N ++  +  +G S+  +  PVL ++  +    F + + 
Sbjct: 60  LPFILPISCFISAFSLFRGLSDNNQITFLKASGASQAIITFPVLMVSCAICCVNFYTCSE 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK---ISKYNPNNTLQGIFIVD 177
           +   CR    +  A   +      L+       +               N         +
Sbjct: 120 LASICRFQTCKEIANMAMTSPTLLLQTLQKKESNRIFITVDHCAKSKFDNVITALKRDKE 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF-KSYTLQTESANSS 236
             +    K       +  +  + +++        +      S   + ++         +S
Sbjct: 180 IANVGLIKTIIPDVANDTVQARGVVMISKLPSTLTDQCSSHSKEYYIETLDEMLIPKITS 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T+    +         P       +     TY  E  +R+   L  +      +V    +
Sbjct: 240 TLFAGKSYMKTRTDYLPWKQ--LVKQSFSHTYLPETLRRIGIGLLCITLTYSGMVLGTYK 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R+   ++ IF  + +   +           +      P L LF+F     +++   K
Sbjct: 298 PRFRKSITLYCIFPVMDLILLI---------VGKNTSSLFPALTLFIFPQVISWIVFAIK 348

Query: 357 KY 358
            Y
Sbjct: 349 AY 350


>gi|320088912|emb|CBY98670.1| Lipopolysaccharide export system permease protein lptG [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 220

 Score = 63.9 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 55/208 (26%), Gaps = 2/208 (0%)

Query: 150 FFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVH 209
           + +  ++                     +   +   + YA S   D + +   L+  +  
Sbjct: 13  WAKDGNNFVYIERVKGDEELAGISIYAFNDQRRLQSVRYAASAKFDPEHKVWRLSQVDES 72

Query: 210 RK-SPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETY 268
              +P     S     ++           + L  +  ++S L N          +    Y
Sbjct: 73  DLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHN-YVKYLKSSGQDAGRY 131

Query: 269 RSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
           +     ++ Q L   +  L+++                   IS    F V       +  
Sbjct: 132 QLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTL 191

Query: 329 IEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +   P  +  L            LM++K
Sbjct: 192 VYGIPPIVGALLPSASFFLISLWLMLRK 219


>gi|255012652|ref|ZP_05284778.1| hypothetical protein B2_02000 [Bacteroides sp. 2_1_7]
          Length = 641

 Score = 63.9 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 73/177 (41%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L+     FLM+    +FI  +  + + I+ +      + +L ++  Y    ++PM  P 
Sbjct: 1   MLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFLVPMALPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              + +     ++    ELL + + G S I +++P++   + +S+  F  +N + P  + 
Sbjct: 61  AILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNNVMPVVQV 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTH 184
            +  L    +       + E  F++      + + K +P + L    ++       +
Sbjct: 121 KLYTLLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYSEGFN 177



 Score = 44.2 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
             +  + +E+HK+ T     ++F  I    A   A++R+     P+ IS+ +    +   
Sbjct: 371 YKVRRHLTEWHKKFTVSFACIMFFFIG---APLGAIIRKGGLGVPVVISVILFIFYYIID 427

Query: 323 SYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +          +     ++L    ++ + + +  K
Sbjct: 428 NMGFKMARDGVWDAWEGMWLSSVVLTPMGIFLTYK 462


>gi|111115643|ref|YP_710261.1| hypothetical protein BAPKO_0861 [Borrelia afzelii PKo]
 gi|110890917|gb|ABH02085.1| hypothetical protein BAPKO_0861 [Borrelia afzelii PKo]
          Length = 355

 Score = 63.5 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 108/355 (30%), Gaps = 1/355 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +   ++ I  +FL   L  + +  +  +   +        SL  +  I    +P    
Sbjct: 2   KIDKLFVKSIILTFLSMNLIFMILIILGDLFVNLLNFLEKNISLKDIFYIYYLYLPKAFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N++ +++   E++ + + G     +++P++ +++ +S+ LF  +N + 
Sbjct: 62  DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVPLTRILRPIILISVFISVVLFFFDNYLV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
               +    L   +            +     +   IK    + N     + I+     +
Sbjct: 122 IDTVAKRDLLIKNSIGNNGSIDKTIIIRDLAREIYNIKSYDIDENAFSNLMIIIKDSKDE 181

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
               Y         ++  +      V     I ++   +   +  ++ E     T++L +
Sbjct: 182 FQTRYDINKAEWKDNKWKLYGIREFVKVGRKIKENAYDVLDGTGIIKLEPDYIRTVMLSS 241

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              N + L+N   +              +   R+      ++        A         
Sbjct: 242 KALNFTKLIN-WISFLKSEHLNYSDALFDLLNRIFFSFRLMLLSFTVGFIALALKKNIFI 300

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             +        +       FS++      N Y         F I +  +  I +K
Sbjct: 301 LSLLNSIAFAVVYVISIVIFSFLADLGYLNIYVASSFTTIFFLIINFLVYRIVRK 355


>gi|313682233|ref|YP_004059971.1| permease yjgp/yjgq family protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313155093|gb|ADR33771.1| permease YjgP/YjgQ family protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 340

 Score = 63.5 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 129/358 (36%), Gaps = 18/358 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YIL  +   F    L +  IA VI +++     +    +L+ + K+  +++P +
Sbjct: 1   MDKLRRYILSNLSILFFSIFLPLFAIASVIFMIKLATYTAVIQITLSEMAKLYLFVVPEL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +     L  ++ + E++++ + G S + + + +L +  LL   L     +
Sbjct: 61  LFYTLPIAFVVGGALALYRLSNDNEMVVVFSLGISPLFVAR-ILAVPALLLSLLLFVNFV 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +       I     + + A     L  + F     D  + I+K +P + + G  I+ ++ 
Sbjct: 120 VVTPYIKIISANFLEKKRAEAKFNLGASEFGHHFGDWMLFINKNDPQSRVFGDVILFNKS 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   +  A    +   +  + L        S  +  +  M FK+  +  + +    +  
Sbjct: 180 MKDEILIKADKAELINKQGVLQLRLDNGVSYSYDNILLRTMLFKTGYINDKLSTDPMVYR 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D   +  L                      +R        +F LIS+       +V 
Sbjct: 240 NTLDYWTNNELRERKT-----------------QRFITNTLLSLFPLISVFLMIALGIVH 282

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R +   I++ L +S   F+  + I  +         +  ++L    S +  ++  ++
Sbjct: 283 ARHQKRWIYLWLFLSIVGFYAAAIITQQWLGFHTIWVVTLVWLIITYSFYKRLVGSRF 340


>gi|332708722|ref|ZP_08428694.1| putative permease [Lyngbya majuscula 3L]
 gi|332352576|gb|EGJ32144.1| putative permease [Lyngbya majuscula 3L]
          Length = 230

 Score = 63.5 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 72/227 (31%), Gaps = 14/227 (6%)

Query: 4   FELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            + YI   +   FL        I   V  +   +  ++    S  I  ++     P  + 
Sbjct: 1   MDRYIAAELIPPFLFGVGGFSSIGVAVGSLFDMVVKITELGLSWTIAAQVVLLKFPEFMS 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    + T    + ++ ++EL+ + + G S   L+ P L L+++++   F+   +I 
Sbjct: 61  YALPISVLLATLIAYSRLSNDSELIALRSCGVSLYRLVAPALVLSLVVTGITFLFNELIV 120

Query: 123 PKCRS-------------TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT 169
           P                                ++ + N             + ++    
Sbjct: 121 PAANYQATITLEKALNQEKPAFDENGILYPEYQTFPQPNGTTTQTIKRLFYANGFDGQTM 180

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK 216
                +  S   + +KI  ++S   +  +       G ++  SP + 
Sbjct: 181 KDLTVLEWSNLGKLNKIILSESALWNSKQNTWDFFHGSIYFISPNTS 227


>gi|34557088|ref|NP_906903.1| hypothetical protein WS0675 [Wolinella succinogenes DSM 1740]
 gi|34482803|emb|CAE09803.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 345

 Score = 63.5 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/356 (11%), Positives = 109/356 (30%), Gaps = 17/356 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + Y+     + F      + FI+ VI  ++   +      S   L ++  Y +PT+
Sbjct: 1   MGNLKKYLFGSFAQLFFPIFAVLFFISSVILFIKIAGVTFVVKMSFGELFELYLYSLPTM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P  F   +   L  +++  EL ++ + G   +   +    L++L+S+FL +    
Sbjct: 61  IFFTIPVTFFSASVISLAKLSQEYELPVLFSLGIDPLRFSRLFFPLSLLVSLFLLLVSLA 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P       +     + ++  +        +L + L             + + +  S D
Sbjct: 121 LVPLSNEAYDRFLDHKKSSVNINLKPAEFGQKLGNWLVYVGDMDEGEKRYKEVVMFSSND 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                   A+   ++     + L              I  + +    ++  +       L
Sbjct: 181 LGRESFILAKEALVESMEGNLELKLFRGSAYFKEELHIKRVDYAQMLIRDSAFKEGGASL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                                 +  +  R +    +   LFP+       +        +
Sbjct: 241 GIM---------GYWKQALGGEKGSDKVRRKLSSSILISLFPLASLFFIPLLGIMHPRFQ 291

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +      + I+  I +G+          I  N   +  ++L       +   + ++
Sbjct: 292 KNYSYFYVIIATGIFYGLV--------HIASNHLPLAGIFLIPLIWLGVGYGLYRR 339


>gi|213423383|ref|ZP_03356371.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 285

 Score = 63.5 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 97/274 (35%), Gaps = 19/274 (6%)

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
            +E+ ++   G S+  L+K  + LA+   I   ++     P       ++ A+A+     
Sbjct: 1   ESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKANPGM 60

Query: 143 SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGSI---DLD 197
           + L +  F +  +   +   +    +    +F+   R        +  A SG +      
Sbjct: 61  AALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDG 120

Query: 198 RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
            Q + LN G     + + +D  I  F++Y         +      +  ++  L N + + 
Sbjct: 121 SQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWNTDND- 179

Query: 258 PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG 317
                      R+E H R+T      +  L+         +  ++ ++  +  ++ +   
Sbjct: 180 ---------RARAELHWRITLVFTVFMMALM---VVPLSVVNPRQGRVLSMLPAMLLYLL 227

Query: 318 VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            F   + I     +     P+++++   +  + L
Sbjct: 228 FFLIQTSIKSNGGK-GKLDPVIWMWAVNLIYLAL 260


>gi|157736891|ref|YP_001489574.1| hypothetical protein Abu_0640 [Arcobacter butzleri RM4018]
 gi|157698745|gb|ABV66905.1| conserved hypothetical membrane protein [Arcobacter butzleri
           RM4018]
          Length = 355

 Score = 63.5 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 105/360 (29%), Gaps = 12/360 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YIL+    +F++  + +      I  LQ    +     S N+ L    Y     
Sbjct: 1   MSILSKYILKKYLINFIIVLISLELFFVGIDYLQNFKNI---PASANLQLLYILYNSFFT 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P          L    +N E +  +  G +R  +  PV+ ++I L I L   +  
Sbjct: 58  LTLALPLSIVFGWIVTLVLFIKNNEFVAFNALGATRKNIFMPVVIVSISLLITLIFLQMT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                         K      FS  + ++F + ++               + I I   + 
Sbjct: 118 PLAYSYEQ----KRKILNDEYFSNTKSDIFLKYNEYYVYFQKLLPLEKKAENIHIYKVKG 173

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
               +    +      D+       ++N  E    +    D+   KF       +     
Sbjct: 174 DNLVETIIGEKAYFQNDKWYVVDVKVINKPENIDINNSKLDVRYEKFLHTLEGFKPKILD 233

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +    +D ++   ++        +    +  R+  + +L    F +   ++    A   
Sbjct: 234 NVYESKSDFSIMDAVSALI-LLKDQGMNTQKIRTILYNQLIIPFFVIPILILVYSFASLN 292

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +      K     I  ++    F+   + +         I +L      +        KK
Sbjct: 293 SRFFNMAKFVSFSIFGTLIVWGFFFLVFRLTSSGTVIPEISMLLTMFIWVIFSIYFYNKK 352


>gi|153820469|ref|ZP_01973136.1| membrane protein, putative [Vibrio cholerae NCTC 8457]
 gi|126508986|gb|EAZ71580.1| membrane protein, putative [Vibrio cholerae NCTC 8457]
          Length = 225

 Score = 63.5 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 76/222 (34%), Gaps = 5/222 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +     L  +     +   L++  F R  D   +       N  L  +F+       
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS 219
           +        +      +   RQ I L DG  +   P   D  
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYM 223


>gi|282879343|ref|ZP_06288087.1| putative membrane protein [Prevotella buccalis ATCC 35310]
 gi|281298540|gb|EFA90965.1| putative membrane protein [Prevotella buccalis ATCC 35310]
          Length = 635

 Score = 63.5 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 78/204 (38%), Gaps = 2/204 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +L+I +  G  F  +     F+  +  + + ++++     S+ ++ +   Y+   ++
Sbjct: 5   KKLDLFIAKQFGLLFAGTFFICQFVLMMQFLWRYVDVLIGKGLSMEVMAQFFWYMGLFLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I + G S +   + ++ +++++    F  +N +
Sbjct: 65  PQALPLAILLASLITFGNLGESSELTAIKSAGISTMRTFRSLIVISVVVCFCSFYFQNYV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN--NTLQGIFIVDSR 179
            P     + QL            + E +F+    +  + + K + +       +    + 
Sbjct: 125 GPSANMKMAQLMISMSQKNPELEIPEGIFYDGIPNSNLYVQKKDMDTGKLYGIMIYRMTG 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIIL 203
             +   I  A SG +        L
Sbjct: 185 SYEDQAIILADSGMLQTTADKKHL 208



 Score = 36.5 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 7/110 (6%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           LN      +    LL  +  E   + T  L  +IF  I    A   A++R+     P+ +
Sbjct: 353 LNFRSMITSDGDRLLREHYIEMINKFTLALTCIIFFFIG---APLGAIIRKGGLGIPVIV 409

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYI----PILYLFLFCISSIFLLMIKK 356
           S+ +    +   +        + + +     +    L  ++S       +
Sbjct: 410 SVLVFIVYYLLDNTGYRMARGDMWTVEFGKGLAPAVLIPLASFVTYKANR 459


>gi|261879842|ref|ZP_06006269.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333501|gb|EFA44287.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 642

 Score = 63.5 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 81/222 (36%), Gaps = 2/222 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I R  G  FL +     F+  +  + + ++ +     S+ IL +   Y+   ++
Sbjct: 6   KKLDIFITRQFGLLFLGTFFICQFVLMMQFLWRFVDDLIGKGLSMEILAQFFWYMALMLV 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I   G S +   + ++ + +++ +  F  +N I
Sbjct: 66  PQAFPLAILLSSLITFGNLGESSELTAIKAAGISLMQSFRSLILITMIICLGSFYFQNNI 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN--NTLQGIFIVDSR 179
            P     + QL    +       + E +F+    +  + + K +         +    ++
Sbjct: 126 GPMANMKLAQLLFSMKQKSPELEIPEGVFYDGIPNTNLYVQKKDVKTGKLYGIMIYRMTQ 185

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM 221
             +   I  A SG +        L       +   +     +
Sbjct: 186 SYEDAAIILADSGMLQSTADKKHLLLSLWSGEWFENMQNQQL 227


>gi|325282782|ref|YP_004255323.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
 gi|324314591|gb|ADY25706.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
          Length = 402

 Score = 63.1 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 60/232 (25%), Gaps = 2/232 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YIL  +    L   L    +            +     +  ++ +  GY +P  
Sbjct: 1   MSRINRYILSELIPPLLAGVLLFTALLSFGYFFVSSQWL--QGVAPGLVAQWIGYQVPDT 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P    + T      +N   EL+ + + G       +PV  + +LL++        
Sbjct: 59  LVKVLPMAAVLMTIVAFGRLNTERELVALQSGGIGLGQAGRPVALIGLLLALLSLWLSLW 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK     + L          S +                        LQ +       
Sbjct: 119 VAPKANVETRSLYWDVMTGSGLSSMAGRTLDLGGGLNVYWAGYDPATRKLQNVRAERWSK 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
               ++    +     +   + L D +    +  +        +        
Sbjct: 179 DDPKRVELVFAREGTFEDNLLRLTDYQAFTVNYAAAAELAAGAQQKQPDLPQ 230


>gi|47155054|emb|CAE85253.1| putative permease [Escherichia coli]
          Length = 227

 Score = 63.1 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 3/222 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + I QL  ++Q  L    L    F   D+   I     + +N      ++ +  
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDIS 219
               +I+ A+S  +     ++  ++L++G  +      +D +
Sbjct: 181 ANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDN 222


>gi|289806566|ref|ZP_06537195.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 219

 Score = 63.1 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 72/200 (36%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++                +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVPKDIQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     +   + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYAFNDQRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIIL 203
             + YA S   D + +   L
Sbjct: 187 QSVRYAASAKFDPEHKVWRL 206


>gi|257462588|ref|ZP_05626998.1| hypothetical protein FuD12_01969 [Fusobacterium sp. D12]
          Length = 270

 Score = 63.1 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 96/271 (35%), Gaps = 6/271 (2%)

Query: 89  IDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEEN 148
           +++ G     ++KP+L+L      F+   +  I P+    ++ LS+K         L+E 
Sbjct: 1   MNSIGMDIRAILKPILYLGFASMFFILFLQESIIPRSYIKLQYLSSKIAYENPVFQLKER 60

Query: 149 LFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEV 208
            F    ++  + I K   +   +GI I ++    T  +      +   D  +I+L     
Sbjct: 61  TFMNNLENYSLYIDKVGRDKHAKGILIFENDKKSTFPVVLVGHEAYWRD-SSIVLEKANF 119

Query: 209 HRKSPISKDISIMKFKSYTLQTES--ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE 266
                         F+   ++ ++  ++    V +    +++ LL            +  
Sbjct: 120 ISFDEKGVRKLTGSFEDKRVELQAYFSDLKIKVKETEMMSIATLLQEMKGKTKEEKLI-- 177

Query: 267 TYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYII 326
            Y+ E H++L      V+  ++ +  +       ++  I    +++     +      + 
Sbjct: 178 -YKVEIHRKLALPFSSVMLSMLGVFLSIGHQRSGKKAGILVGILTIFFYISLLNIGIVLA 236

Query: 327 HKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  +        L   L    +  L ++KK+
Sbjct: 237 NVGKIPILLGVWLPNLLLAALTYRLYLVKKR 267


>gi|319956628|ref|YP_004167891.1| permease yjgp/yjgq family protein [Nitratifractor salsuginis DSM
           16511]
 gi|319419032|gb|ADV46142.1| permease YjgP/YjgQ family protein [Nitratifractor salsuginis DSM
           16511]
          Length = 340

 Score = 62.7 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/360 (11%), Positives = 128/360 (35%), Gaps = 22/360 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YIL    +++L+  L  + +  +I ++Q   L S        L+++ GY++P +
Sbjct: 1   MGKTRRYILWSFAKAYLLVFLPFLLVVSLIFVIQLSILSSRVNLEFRELVQLFGYMLPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P        N  T  +   E + + + G +   +++ ++   +L +  L +   +
Sbjct: 61  FFYTVPLSLIAALANTFTRFSEENEFIALFSLGHTPGKVLRFMIPTLLLFTALLLVLSVM 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ +        + ++A     +  N   +     ++ +   + N+T + + + +   
Sbjct: 121 LYPQMKQK-LNHFKRQKIAEATLNISPNKLSQNFGSYHVFVESKDANDTYRNMVLFNQGT 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
              ++++ A+ G +  D +   L       ++   K +  + ++   +     N    ++
Sbjct: 180 KGAYQLFIAREGRVANDGKRFTLTLRNGTGETSDPKKVENLHYRELDIYQYPRNVYQSIV 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            + +     L +                    +         + FG+I+ +        R
Sbjct: 240 TSREYWKKALHDKGRRGKL------------LYLIFVSLTPILAFGIIAALTFYNPRYQR 287

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                     +L++          +   I Q    +P+    +  + ++ + +++++  +
Sbjct: 288 SLSIAVIFITALAVY---------LPAAILQKSGSVPLFIALVIFLLALGIFLLRRRVLR 338


>gi|315636068|ref|ZP_07891325.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315479637|gb|EFU70313.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 355

 Score = 62.7 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 105/360 (29%), Gaps = 12/360 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YIL+    +F++  + +      I  LQ    +     S N+ L    Y     
Sbjct: 1   MSILSKYILKKYLINFIIVLISLELFFVGIDYLQNFKNI---PASANLQLLYILYNSFFT 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P          L    +N E +  +  G +R  +  PV+ ++I L I L   +  
Sbjct: 58  LTLALPLSIVFGWIVTLVLFIKNNEFVAFNALGATRKNIFMPVVIVSISLLITLIFLQMT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                         K      FS  + ++F + ++               + I I   + 
Sbjct: 118 PLAYSYEQ----KRKILNDEYFSNTKSDIFLKYNEYYVYFQKLLPLEKKAENIHIYKVKG 173

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
               +    +      D+       ++N  E    +    D+   KF       +     
Sbjct: 174 DNLVETIIGEKAYFQNDKWYVVDVKVINKPENIDINNSKLDVRYEKFLHTLEGFKPKILD 233

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +    +D ++   ++        +    +  R+  + +L    F +   ++    A   
Sbjct: 234 NVYESKSDFSIMDAVSALI-LLKDQGMNTQKIRTILYNQLIIPFFVIPILILVYSFASLN 292

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +      K     I  ++    F+   + +         I +L      +        KK
Sbjct: 293 SRFFNMAKFVSFSIFGTLIVWGFFFLVFRLTSSGTIIPEISMLLTMFIWMVFSIYFYNKK 352


>gi|217322882|ref|YP_002327178.1| hypothetical protein ABBFA_003302 [Acinetobacter baumannii
           AB307-0294]
 gi|213986547|gb|ACJ56846.1| hypothetical protein ABBFA_003302 [Acinetobacter baumannii
           AB307-0294]
          Length = 294

 Score = 62.7 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 89/284 (31%), Gaps = 16/284 (5%)

Query: 74  TNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS 133
             V   +  + E+ +++ +G SR  L + ++ + ++  +   +    + P      ++L+
Sbjct: 1   MLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWMTPWGLREFEKLT 60

Query: 134 AKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGS 193
               +   F  +    F           S       L+ IF       +        +  
Sbjct: 61  TTQAVRTGFDLVRPREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAKEGKPDVMILAKE 120

Query: 194 IDLDR------QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND-QN 246
                        + L  G  +   P     +  +F+SY L+ E+           +  +
Sbjct: 121 ATRVEVANDTANVVDLVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKDVKFESGDVEALS 180

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
            S L +                RSE   RL      +I  ++S+  ++      +  ++ 
Sbjct: 181 TSKLFSKA---------NDPVVRSELGWRLFGPFTIIIALMLSVALSEVSPRQGRYYRLI 231

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
           P     +    +       I K E + +  P+  L     +++F
Sbjct: 232 PSIFIFASLIVLMIAIKTRISKGELDIWAYPVALLVYAIAAALF 275


>gi|33519520|ref|NP_878352.1| putative inner membrane protein [Candidatus Blochmannia floridanus]
 gi|33517183|emb|CAD83565.1| putative inner membrane protein; predicted permease [Candidatus
           Blochmannia floridanus]
          Length = 360

 Score = 62.7 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 115/355 (32%), Gaps = 2/355 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              E YI + +  +  M  L  + ++ +I+++  +      T S+  +       I    
Sbjct: 5   NILERYIKKYVLLNIFMIFLIFISLSSIIRLVDELRNFQKQTYSVFEIFFCIFLNIIKDF 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +       +     L  +    EL+I+   G S + +   V+  +I + +   I    +
Sbjct: 65  ELFLSLSTLLGGVLGLGILELRNELIIMKVFGLSNLQINLSVIKTSIFIVLLYVIYNIWL 124

Query: 122 EPKCRS-TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            P  +         K      F    +NL+     + +I ++       L GI +    +
Sbjct: 125 LPYSQYLLCSHQHYKQYNVYLFPEKNKNLWLMDSGNSFIHVNYMLTTQDLLGINLYHFTE 184

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  K       +  +D    + N  E+     +      +    +      A  S I +
Sbjct: 185 ERQLKRIIYIEKATYIDNSWSVSNINELEFVDKMQFLNRKILSYEWNTTLTPAILSMITV 244

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  ++S L+       +   +  + Y+  F  ++   +F V+   I+++ +      +
Sbjct: 245 NPHFLSISKLI-CCIKYFDVLGQNSKYYQLIFWDKIFSPIFGVMMLTIALLYSYGPFYKK 303

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           +          +   F V      I+  +      +  + L +  +    + +  
Sbjct: 304 KISFRLFFGGIIGFVFYVLHQIFEILSIVYNITPIVGSIILIMLFLMINTIFLRN 358


>gi|119953585|ref|YP_945795.1| hypothetical protein BT0808 [Borrelia turicatae 91E135]
 gi|119862356|gb|AAX18124.1| hypothetical protein BT0808 [Borrelia turicatae 91E135]
          Length = 355

 Score = 62.3 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/352 (9%), Positives = 102/352 (28%), Gaps = 1/352 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +   +  I  +FL      V +  +I +   +        S++ ++ I    +P    
Sbjct: 2   KVDKLFVNNISLTFLFMNFLFVILIVLIDLFTNLFNYLDHNLSISDIVYIYYLYLPKCFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N++ +++   E++ + + G S   +++ ++ L++ +S+ LF  +N + 
Sbjct: 62  DGLALSFLFAVSNLIGNLSMRNEIIGLFSCGISISRILRSIIMLSVFISVMLFFFDNYLV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
               +        +      +     +     +   IK      +     + I+  ++  
Sbjct: 122 IDTIAKRDAFLKNSVGNQGANDRNIIIRDFAREIYNIKHYDIENDTIANLMIILKDQNDN 181

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             K Y          R  +         +  + +    +      +  E      ++L +
Sbjct: 182 FKKRYDISKAEWIDSRWRLYGVREFSKIERDVIEKFHEVLDGRGIINLEPEYIKIVMLSS 241

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              N S L++                  +   R+      ++        +         
Sbjct: 242 KTLNFSKLIS-WIKALRREKLDYSEALFDLLSRIFFSFRLILLSFTVSFVSLALKKNIFI 300

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +        +       FS++             L   LF + +  +  +
Sbjct: 301 WSLLNSIAFAVVYVMSIMVFSFLADLGYLPIAVASSLPTILFIVINFIIYNL 352


>gi|254672902|emb|CBA07219.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
          Length = 210

 Score = 62.3 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 68/204 (33%), Gaps = 2/204 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +       +  + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGN--TGIWLKEKNSIINVREMLPDHTLLGIKIWARND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILN 204
                       ++     +  L 
Sbjct: 179 KNELAEAVEADSAVLNSDGSWQLK 202


>gi|255613816|ref|XP_002539536.1| Inner membrane protein yjgQ, putative [Ricinus communis]
 gi|223505146|gb|EEF22847.1| Inner membrane protein yjgQ, putative [Ricinus communis]
          Length = 283

 Score = 62.3 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 94/284 (33%), Gaps = 8/284 (2%)

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           M  ++EL+++  +G S  T+ K +L + ++ ++  F+   II P      +++  +A  +
Sbjct: 1   MASSSELIVMRTSGISLQTIAKMLLSIGLVFALVTFLIGEIIAPISEKMAQRIRIQATDS 60

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ 199
           +     +  L+ +         +     + +           +   I +A  G  + D  
Sbjct: 61  VVAQDFQSGLWIKDGSSFVNVATVMPDTSLVDIRIYDFDAQFRLRNISHADKGYFEDDHW 120

Query: 200 A--IILNDGEVHRKSPISKDISIMKFKSYTL-QTESANSSTIVLKANDQNLSFLLNPNPN 256
               +        KS  +  ++   FK              ++L   ++  ++ L     
Sbjct: 121 ILSNVTQTKMHTSKSAQNNSVTSQFFKQTKWESLIRPELLNVLLVLPEKMSAWNLYSFIQ 180

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
             +   +    Y+     +L   L  ++  ++++         R       IF  + +  
Sbjct: 181 YLHQNGQRSTRYQVALWSKLVYPLACLVMVMLALPFGFL--QQRAGGISAKIFAGIFLGV 238

Query: 317 GVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMIKKK 357
                    +H    N   P    I    LF  + + +L   ++
Sbjct: 239 VYQIMNRVFVHLGVLNDWSPLVSAISPTLLFLAAGLGMLYYVER 282


>gi|325853208|ref|ZP_08171296.1| permease, YjgP/YjgQ family [Prevotella denticola CRIS 18C-A]
 gi|325484384|gb|EGC87307.1| permease, YjgP/YjgQ family [Prevotella denticola CRIS 18C-A]
          Length = 703

 Score = 62.3 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 86/222 (38%), Gaps = 2/222 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  +++I R  G  F  +    +F+  +  + + ++ +     S+++L +   Y+   ++
Sbjct: 64  RKLDIFIARQFGMLFAGTFFISLFVLMMQFLWRYVDDLIGKGLSMDVLGQFFWYMSLMMV 123

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I + G S +   + ++ +++L++   F  +N +
Sbjct: 124 PQALPLAILLSSLISYGNLGESSELTAIKSAGISLVQSFRGLIVISVLIACGSFYFQNNV 183

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN--PNNTLQGIFIVDSR 179
            P  +  I QL    +       + E +F+    +  + + K +    +    +    + 
Sbjct: 184 GPSAQKHIAQLLISMKQKSPELEIPEGIFYDGIPNTNLYVEKKDLKTGHLYNIMVYRMTD 243

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM 221
             +   I  A SG +    +   L       +   +     M
Sbjct: 244 SYEDQAIILADSGMLQSTAEKKHLVLNLWSGEWFENMRSQEM 285


>gi|149200566|ref|ZP_01877574.1| putative permease, YjgP/YjgQ family protein [Lentisphaera araneosa
           HTCC2155]
 gi|149136338|gb|EDM24783.1| putative permease, YjgP/YjgQ family protein [Lentisphaera araneosa
           HTCC2155]
          Length = 329

 Score = 62.3 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/322 (12%), Positives = 90/322 (27%), Gaps = 25/322 (7%)

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
            L+P +L    P    +  T V + M+   E+  +  +G S   ++ P + LA++ S  L
Sbjct: 1   MLLPKILAYAIPIASLVSVTLVFSRMSAENEITAMRASGISLWQIVNPAILLALVSSACL 60

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           F       P   +T K +     L+   ++L       L         K           
Sbjct: 61  FYLNMFAVPHLEATRKSMMKGELLSNPSTFLRGGTTIDLGKLSVEIGEKKEDGTLKDLRV 120

Query: 175 IVDSR-----------DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI--------- 214
           I   +            +         S +I+     I+ N+ E  +             
Sbjct: 121 IEVDKATDIVSNQLLAQSGKIINTTENSFTIEFIDVIILDNNWEFLKNDKGENKSLSGVK 180

Query: 215 -----SKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR 269
                + + +   + +  L + +       L   +      +  N               
Sbjct: 181 VTRLPNANTTYTFYTNDELNSGNLRKRAKYLNIKEMIARLAVLKNKEQTKTVRREHTDLL 240

Query: 270 SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
              +K L     P+ F L+++    + +       +    I +   +             
Sbjct: 241 YNLNKNLALSFSPLAFLLMALPFGLRSSRSETSIGLLISLIVMMTYYATILITGAFDKHT 300

Query: 330 EQNPYYIPILYLFLFCISSIFL 351
             +P  +  L   +F    + +
Sbjct: 301 AMHPEILVWLPNIIFQSLGLGM 322


>gi|317060239|ref|ZP_07924724.1| conserved hypothetical protein [Fusobacterium sp. D12]
 gi|313685915|gb|EFS22750.1| conserved hypothetical protein [Fusobacterium sp. D12]
          Length = 265

 Score = 61.9 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 90/259 (34%), Gaps = 6/259 (2%)

Query: 101 KPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK 160
           KP+L+L      F+   +  I P+    ++ LS+K         L+E  F    ++  + 
Sbjct: 8   KPILYLGFASMFFILFLQESIIPRSYIKLQYLSSKIAYENPVFQLKERTFMNNLENYSLY 67

Query: 161 ISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISI 220
           I K   +   +GI I ++    T  +      +   D  +I+L                 
Sbjct: 68  IDKVGRDKHAKGILIFENDKKSTFPVVLVGHEAYWRD-SSIVLEKANFISFDEKGVRKLT 126

Query: 221 MKFKSYTLQTES--ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
             F+   ++ ++  ++    V +    +++ LL            +   Y+ E H++L  
Sbjct: 127 GSFEDKRVELQAYFSDLKIKVKETEMMSIATLLQEMKGKTKEEKLI---YKVEIHRKLAL 183

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
               V+  ++ +  +       ++  I    +++     +      + +  +        
Sbjct: 184 PFSSVMLSMLGVFLSIGHQRSGKKAGILVGILTIFFYISLLNIGIVLANVGKIPILLGVW 243

Query: 339 LYLFLFCISSIFLLMIKKK 357
           L   L    +  L ++KK+
Sbjct: 244 LPNLLLAALTYRLYLVKKR 262


>gi|239948137|ref|ZP_04699890.1| putative permease [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922413|gb|EER22437.1| putative permease [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 233

 Score = 61.9 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 97/229 (42%), Gaps = 10/229 (4%)

Query: 135 KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI 194
             +     S +EE  F ++  D+ + I K +  N + G+ I D+R+     + +A SG++
Sbjct: 7   FIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNPSVVFAGSGTL 66

Query: 195 DLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANS-----STIVLKANDQNLS 248
           ++   + I    +  R+    + +++ + F S  ++ ++ N      +    +AN+  +S
Sbjct: 67  NIYDNSPIFELNKGIRQEYDVNGNLTQLTFDSLMIKLQNDNPLVSQRTKHNKEANEYYIS 126

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPI 308
            LL P  +    +        +E H+R+   L+  +   +++    +    ++   +  +
Sbjct: 127 ELLAPPHDLAITKKI---KLIAEAHQRIIWPLYNFVLPFLALAVFLRYPYSKKTTFMPVL 183

Query: 309 FISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           F +L++       F  + +   +N  +I   Y  L     I L +  +K
Sbjct: 184 FSALTVLLVTSIHF-ILQNFASKNLDFIFACYSNLVIALMIGLYLFVRK 231


>gi|46446271|ref|YP_007636.1| hypothetical protein pc0637 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399912|emb|CAF23361.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 383

 Score = 61.9 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/347 (12%), Positives = 94/347 (27%), Gaps = 25/347 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y +    +         + I   ++ L  I   ++    ++ +L  + Y IP +LP
Sbjct: 4   ILWRYSINHFLKIVFACVFAFISILLTMR-LDEIANFAALGAPISYILLFAFYQIPYILP 62

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    + +   +  ++   EL  +   G +   L+ P+L  A  L+IF F   + + 
Sbjct: 63  IALPLSCLIASLIFVQRLSNTHELTALRACGFALKDLLAPILLTAAFLTIFNFWIVSEVA 122

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
            +       L ++ +       L      RL    +  +                     
Sbjct: 123 TQTHLQTNILKSELRSINPLLLLNNKHLMRLKGLYFDSLGPSRVGEMATDAVFAIPSQHH 182

Query: 183 THKIYYAQSG------SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                +                  ++         +     I  MK  +  ++  S    
Sbjct: 183 QRINLFIAKQLKASSSIFTAQGATLLTTTSLNQENTFDDLLIENMKKSTTHVEDFSQILQ 242

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYR------------------PELLETYRSEFHKRLTQ 278
             V   N+  L   L         +                          SE  KR + 
Sbjct: 243 KKVWTVNNDYLKLPLLLIRAQEQKQALRQAKLENKKPVIVKDLKGQFHKSLSEIAKRSSI 302

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYI 325
               + F L+        +  R+ K +  + I  +     F+    +
Sbjct: 303 AFAVISFTLMGTAFGMNISRQRKHKNLLIVIILTTFYLTTFFLAKGL 349


>gi|148651871|ref|YP_001278964.1| permease YjgP/YjgQ family protein [Psychrobacter sp. PRwf-1]
 gi|148570955|gb|ABQ93014.1| permease YjgP/YjgQ family protein [Psychrobacter sp. PRwf-1]
          Length = 494

 Score = 61.9 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 72/187 (38%), Gaps = 1/187 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +  +   F+V +    ++++   + +     + +L  I GY +P  L 
Sbjct: 24  ILRRYMTRQVASTTALVLGFLVVLLLGGRMIRYFGIAAEGRLDVGLLFSIIGYNLPYFLE 83

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P  F +    V   +  + E+ +++ +G SR  L + ++ L ++L +         +
Sbjct: 84  LVLPLSFFIGLMLVFGRLYVDHEMAVLNGSGISRGRLARLIIPLILVLFVLEAGLSLYGK 143

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      + +  +  L+  F  +    F   D D ++ +   N N T     I+      
Sbjct: 144 PWGVKNSESIWQQQSLSSAFDLIRPQTFINSD-DYHLYVGSMNDNKTELQDVILIQTAKD 202

Query: 183 THKIYYA 189
             K    
Sbjct: 203 AAKSVKP 209



 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 55/173 (31%), Gaps = 13/173 (7%)

Query: 191 SGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK-ANDQNLSF 249
            GS +  +  + L  G  +     S   S + F+ Y +      +  +  +    Q++  
Sbjct: 288 KGSEESGKTQLDLFQGRRYEVGADSLVYSQIGFERYRISINQPPADVLTEENVTTQSVPA 347

Query: 250 LLNPNPNNPNYRP---------ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           L                     + + + ++E   RL      ++  ++++  A    +  
Sbjct: 348 LWKAATGQKVATKADGSTEPEPQQILSAQAELGYRLALPWLIILAPMLAVPLA---QVKP 404

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           ++ +   +  ++ I          + + I +    +    L L     + L +
Sbjct: 405 RQGRWLRLLPAILIFTSCVLVIISLKNAITKGTLSVLSYPLVLIGFIVLALYL 457


>gi|55980367|ref|YP_143664.1| hypothetical protein TTHA0398 [Thermus thermophilus HB8]
 gi|55771780|dbj|BAD70221.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 336

 Score = 61.9 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 106/353 (30%), Gaps = 20/353 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+LR +   +L+       +     +     ++ S       +  +  Y +P  L +
Sbjct: 2   LGRYVLREVLVPYLVGVFLFAALLTFDLLSSLSGVLLSRGVGAREVGLLVLYRLPWTLSL 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P          L  + R +EL      G   + L++P++ LA+ +S+   ++   + P
Sbjct: 62  ALPLGLVFAVLVGLAGLIRRSELKAAYAAGVPPLALLRPLVLLALAVSLLNLLNLAELRP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           + +     L  +       +             L +  ++                  + 
Sbjct: 122 RSQEAYDGLLGRILYGEGGASGVLRRQVYAPPGLGVYFAEEVYPEPEGNRLRGVRVVDER 181

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            ++Y A+ G  D +   +     E     P    +             S +         
Sbjct: 182 GRVYSAEEGLWDEEGWRLKGYVVEGEEVRPFEGVLPFPARFRPKESLGSRD-------PY 234

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
           D      L         R ++    R  FH+RL   L  ++      + A   AL    +
Sbjct: 235 DSTPLEELWA-------RAQVEPEARFAFHRRLADALGGLV------LGAAAAALGLSLR 281

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +    F+ + +    ++    +  ++ +      + YL      ++   +  +
Sbjct: 282 EAAWAFLGVVLLIFGYYVLWTLAAQLARYDVSPLLAYLPDLFYGALAGALAWR 334


>gi|46198338|ref|YP_004005.1| hypothetical protein TTC0030 [Thermus thermophilus HB27]
 gi|46195960|gb|AAS80378.1| hypothetical membrane spanning protein [Thermus thermophilus HB27]
          Length = 336

 Score = 61.9 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 107/353 (30%), Gaps = 20/353 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+LR +   +L+       +     +     ++ S       +  +  Y +P  L +
Sbjct: 2   LGRYVLREVLVPYLVGVFLFAALLTFDLLSSLSGVLLSRGVGAREVGLLVLYRLPWTLSL 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P          L  + R +EL      G   + L++P++ LA+ +S+   ++   + P
Sbjct: 62  ALPLGLVFAVLVGLAGLIRRSELKAAYAAGVPPLALLRPLVLLALAVSLLNLLNLAELRP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           + +    +L  +       +             L +  ++                  + 
Sbjct: 122 RSQEAYDRLLGRILYGEGGASGVLRRQVYAPPGLGVYFAEEVYPEPEGNRLRGVRVVDER 181

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            ++Y A+ G  D +   +     E     P    +             S +         
Sbjct: 182 GRVYSAEEGLWDEEGWRLKGYVVEGEEVRPFEGVLPFPARFRPKESLGSRD-------PY 234

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
           D      L         R ++    R  FH+RL   L  ++      + A   AL    +
Sbjct: 235 DSTPLEELWA-------RAQVEPEARFAFHRRLADALGGLV------LGAAAAALGLSLR 281

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +    F+ + +    ++    +  ++ +      + YL      ++   +  +
Sbjct: 282 EAAWAFLGVVLLIFGYYVLWTLAAQLARYDVSPLLAYLPDLFYGALAGALAWR 334


>gi|296274436|ref|YP_003657067.1| permease YjgP/YjgQ family protein [Arcobacter nitrofigilis DSM
           7299]
 gi|296098610|gb|ADG94560.1| permease YjgP/YjgQ family protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 339

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 127/356 (35%), Gaps = 18/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+L     +F    L + FI  +I +++  ++ S  T ++  L  +  Y +P ++ 
Sbjct: 2   KLKQYLLSQFSNTFFPIFLVLFFITSIIFLVRIASITSVITLNIFELGTLYAYNLPNIIF 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P  F +     L+ ++   EL+++ + G +   ++K  L +  L+S+ L I    + 
Sbjct: 62  YTMPISFFVAMVITLSKLSSEYELIVVTSFGLNPSNILKVFLPITFLISLSLLILSIGLI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           PK +   +Q+  +      F+        +  D L     K +       +F  +++ T 
Sbjct: 122 PKTKYLSQQMINQKTKEANFNIKASEFGQKFGDWLIYISKKDDKLYEEVKLFKTENKGTD 181

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
              I      + D    + IL DG+          I+ + +K   +    + S       
Sbjct: 182 QFIIAKNARLNNDAGNLSFILKDGKAFYFEQDK--INQIDYKVMHINDTLSESQITPFTN 239

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
             +     +N + +                  + + ++   IF  ISI           R
Sbjct: 240 AYEYWKERINSDGDIA----------------KFSFYVLTSIFPFISIYLVVAFGYFNPR 283

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            + +       IS  +++  S  + K         I+  +      I+ L +KK Y
Sbjct: 284 YEKNRSVAYAVISVVMYYLISDPLTKSIGLLSIPSIIVFWTIMSYFIYKLTVKKVY 339


>gi|203284704|ref|YP_002222444.1| hypothetical protein BDU_816 [Borrelia duttonii Ly]
 gi|203288236|ref|YP_002223251.1| hypothetical protein BRE_819 [Borrelia recurrentis A1]
 gi|201084147|gb|ACH93738.1| uncharacterized conserved protein [Borrelia duttonii Ly]
 gi|201085456|gb|ACH95030.1| hypothetical protein BRE_819 [Borrelia recurrentis A1]
          Length = 402

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/352 (10%), Positives = 103/352 (29%), Gaps = 1/352 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +   +  I  +FL      V +  +  +L  +        S+N ++ I    +P    
Sbjct: 49  KVDKIFVNNILLTFLFMNFLFVILIVLFDLLTNLLNYLEHNLSINDIIYIYYLYLPKCFS 108

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N+L +++   E++ + + G S   +++ ++ L++ +S+ LF  +N + 
Sbjct: 109 DGVALSFLFAVSNLLGNLSMRNEIIGLFSCGISIARILRSIIMLSVFVSVILFFFDNYLV 168

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
               +               +     +     +   IK      +     + I+  +D  
Sbjct: 169 VDTVAERDAFLKNNIGNQGANDRNIIIKDFAREIYNIKRFDVETHIITNLMIILKDQDDN 228

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             K Y          +  +         +  + +    +      +  E      I+L +
Sbjct: 229 FKKRYDISKAEWVDSKWMLYGVREFYKVELDVIEKFYEVLDGENIVNLEPGYIKIIMLSS 288

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              N S L+     +             +   R+      ++        +         
Sbjct: 289 KTLNFSKLV-TWIGDLIKENLNYSDALFDLLNRIFFSFRLILLSFTVSFVSLFLKKNIFI 347

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +        +       F+++      + +    L   LF I +  +  +
Sbjct: 348 WSLLNSIAFAVVYVISIMVFNFLADLGYLSIFIASSLPTILFIIINFVIYNL 399


>gi|317503835|ref|ZP_07961845.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315665031|gb|EFV04688.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 632

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 79/209 (37%), Gaps = 2/209 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  F+ +     F+  +  + + I+ +     S+ ++ K   Y+   ++
Sbjct: 5   KKLDIFIAKQFGMLFVGTFFICQFVLMMQFLWRYIDELIGKGLSMEVMAKFFWYMGLMLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I   G S +   + ++ + I +S   F+ +N I
Sbjct: 65  PQALPLAILLSSLITFGNLGESSELTAIKAAGISLMQSFRSLIVITIFISGLSFVFQNNI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN--PNNTLQGIFIVDSR 179
            P+  + I QL    Q       + E +F+    +  + +   +         +    + 
Sbjct: 125 GPEANNKIAQLMISMQQKSPELEIPEGVFYDGIPNSNLYVQHKDLKTGKLYGVMIYRMTG 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV 208
             +   I  A SG +    +   L     
Sbjct: 185 SYEDQAIILADSGMLQSTAEKKHLVLTLW 213


>gi|307566095|ref|ZP_07628553.1| putative membrane protein [Prevotella amnii CRIS 21A-A]
 gi|307345283|gb|EFN90662.1| putative membrane protein [Prevotella amnii CRIS 21A-A]
          Length = 633

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 86/222 (38%), Gaps = 2/222 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  F+ +    +F+  +  + + ++ +     ++++L +  GY+   ++
Sbjct: 5   KKLDIFIAKQFGLLFVGTFFISLFVLMMQFLWRFVDDLIGKGLTIDVLAQFFGYMALMMV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I   G S     + ++ + IL+++  F  +N I
Sbjct: 65  PQALPLAVLLSSLMTYGNLGESSELTAIKAAGISLFQSFRGLIGITILITLLSFYFQNNI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN--PNNTLQGIFIVDSR 179
            P  +  + QL    +       + E +F+       + + K N    +    +    + 
Sbjct: 125 APVAQKHLYQLIISMKQKSPELEIPEGVFYSGIPQTNLYVEKKNLKTGHLYNIMVYRMTD 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM 221
             +   I  A SG +    +   L     + +   +     +
Sbjct: 185 SYEDQAIILADSGMLQSTAEKKHLVLNLWNGEWFENMRDQEI 226


>gi|255349244|ref|ZP_05381251.1| putative membrane transport protein [Chlamydia trachomatis 70]
 gi|255503781|ref|ZP_05382171.1| putative membrane transport protein [Chlamydia trachomatis 70s]
 gi|255507462|ref|ZP_05383101.1| putative membrane transport protein [Chlamydia trachomatis
           D(s)2923]
 gi|289525885|emb|CBJ15367.1| putative membrane transport protein [Chlamydia trachomatis Sweden2]
 gi|296435471|gb|ADH17649.1| putative membrane transport protein [Chlamydia trachomatis E/150]
 gi|296439188|gb|ADH21341.1| putative membrane transport protein [Chlamydia trachomatis E/11023]
          Length = 354

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/348 (11%), Positives = 113/348 (32%), Gaps = 9/348 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      ++    ++ +   L ++ I+ +  + + ++ ++        + K++ Y IP +
Sbjct: 1   MPILWKVLIFRYLKTTVFCTLSLICISIISSLQEIVSYIA-KDVPYATVFKVTAYQIPYL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP + P    +    +   ++ N ++  +  +G S+  +I PVL  + +L  F F + + 
Sbjct: 60  LPFILPVSCFISAFTLFRKLSDNNQITFLKASGASQGMIIFPVLIASGVLCCFNFYTCSE 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI---SKYNPNNTLQGIFIVD 177
           +   CR    +  A   +      L+       D               N  +      +
Sbjct: 120 LASICRFQTGKEIANIAMTSPALLLQTLQKKENDRIFIAIDHCGKSKFDNVIIALKHNQE 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +    +          +  + +++           + + +    ++         ++T
Sbjct: 180 ISNIGFIETIIPDVNKDSVQAKNVLVISKIPLFSEARTSNPNEFYLETLDEFLIPKITAT 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +    +         P         +    + +E  +R+   L         +     + 
Sbjct: 240 LFAGKSYMKTRTDYLPWKQLI----QDARLHLAEILRRIAIGLLCSTMTFSGLALGTYKP 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
             R+   I+ +F  L++ F +  G + I        +  P L  +L  
Sbjct: 296 RFRKPVLIYALFPILNLIFLI-VGKNTIHPISAVMLFLFPQLLSWLIF 342


>gi|307721207|ref|YP_003892347.1| permease YjgP/YjgQ family protein [Sulfurimonas autotrophica DSM
           16294]
 gi|306979300|gb|ADN09335.1| permease YjgP/YjgQ family protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 340

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 120/341 (35%), Gaps = 14/341 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YIL      F+   L +  IA VI +++     +    S+  + K+  +++P +
Sbjct: 1   MQRLQKYILNNFSALFMSIFLPLFVIASVIFLIKLSTYTAVIQLSIWEMGKLYLFVLPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  ++ + E+++I   G     ++K     A +LS+ L     +
Sbjct: 61  LFYTLPITFFIAATLSLFKLSNDNEIIVIFALGIEPGFIVKTFFKPAFILSLLLAFDFLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      K   +  +    F+           D L + I + + + T   +F+ + + 
Sbjct: 121 VSPHTTVLSKNFLSYKKSEAKFNLAASEFGNSFGDWL-LYIGEKDKDGTFSKVFLFNKKQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +  A+  ++  D   + L   +    S  +   S + FK+  +        T   
Sbjct: 180 ENEEILIAAKRATVINDAGILRLKLMDGEGYSYSTNKFSQVNFKAMLINDTLKADLTTYK 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +     LS              E     +    K     LFP+I   +       +   +
Sbjct: 240 QPLQYWLS-------------KENAGRKKHVLIKDTLLSLFPMITLFLIASIGIVQVRHQ 286

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
           + K    +F+++ + +G+  G   +          +  L  
Sbjct: 287 KSKVYLYLFLTIVLYYGMTIGLEKMFQYYTILVVTLSWLIA 327


>gi|312129693|ref|YP_003997033.1| permease yjgp/yjgq family protein [Leadbetterella byssophila DSM
           17132]
 gi|311906239|gb|ADQ16680.1| permease YjgP/YjgQ family protein [Leadbetterella byssophila DSM
           17132]
          Length = 453

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 102/298 (34%), Gaps = 17/298 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +   ++     F+++   +VFI  +  ++            + +  K+  Y     
Sbjct: 1   MKKIDKLFVKSYIGPFVLTTAIVVFIFLMRFLMIYFPEFIGKNLDMMVFAKLFFYFTMMT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + T     ++   +EL  + + G     LI P + L+I ++IF     N 
Sbjct: 61  IPMSLPLATLLATLMCFGNLGEKSELTAMKSAGIPITRLIVPTMILSIFVAIFSIGYNNT 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P        L    +       ++E +F+       IK+ K   +       IV   +
Sbjct: 121 VNPWANLKGWSLLYDIKTTKPALNIQEGIFYNQIPGYRIKVEKKVGDGQSLKNVIVYDHN 180

Query: 181 --TQTHKIYYAQSGSID----LDRQAIILNDGEVH----------RKSPISKDISIMKFK 224
             +    I  A SG +       +    L +G  +          + +  S   + + F 
Sbjct: 181 TGSGNKNITVADSGRMYTINKESQLVFELYNGVNYSEGSSYNNMAQMTRYSFQKNKIVFL 240

Query: 225 SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
             +   + +           +++  L N   ++ N +       +   +KRL  + FP
Sbjct: 241 LSSFGLKRSKEEDFTYHEYMKSIPEL-NEKIDSLNKQIRDKSGQQIIAYKRLDLYAFP 297



 Score = 41.1 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 8/88 (9%), Positives = 28/88 (31%), Gaps = 3/88 (3%)

Query: 270 SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
            E   ++T     +   LI        +++++     P+ IS++     +          
Sbjct: 365 LERWNKVTTGFSCLAMFLIGASL---GSIIKRGGFGMPVLISIAFFILYYLLQQMGNKYA 421

Query: 330 EQNPYYIPILYLFLFCISSIFLLMIKKK 357
           ++      +     F +      ++ ++
Sbjct: 422 KEGLISAVVGAWMPFSVLITIGALLMRR 449


>gi|312148449|gb|ADQ31108.1| putative permease, YjgP/YjgQ family [Borrelia burgdorferi JD1]
          Length = 355

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 118/355 (33%), Gaps = 1/355 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +   ++ I  +FL   L  + +  +  +   +         L  +L I    +P    
Sbjct: 2   KIDKLFIKSIILTFLSMNLLFMILIMLGDLFVNLLNYLEKNIGLKDILYIYYLYLPKAFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N++ +++   E++ + + G     ++KP++ ++I +S+ LF  +N + 
Sbjct: 62  DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVPLTRILKPIILISIFISVVLFFFDNYLV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
               +    L   +            +     +   IK    + N     + I+     +
Sbjct: 122 IDTIARRDVLVKNSIGDSRSGDKTIIIRDFAREIYNIKSYDIDENTFANLMIIIKDNKDE 181

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
               Y         ++  +      V     I ++   +   +  ++       T++L +
Sbjct: 182 FQTRYDINKAEWKDNKWRLYGIREFVKVGKKIKENAYDVLDGTGIIKLAPDYIRTVMLSS 241

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              N + L+N        R    + +    ++    +   ++   +  +A   +  +   
Sbjct: 242 KALNFTKLINWISFLKAERLNYSDAFFDLLNRIFFSFRLILLSFTVGFIALALKKNIFIL 301

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             ++ I  ++     +   F+++      + Y         F I + F+  I +K
Sbjct: 302 SLLNSIAFAVVYVISI-VIFNFLADLGYLHIYIASSFTTIFFLIINFFVYRIVRK 355


>gi|11465471|ref|NP_045138.1| hypothetical protein CycaCp121 [Cyanidium caldarium]
 gi|6466374|gb|AAF12956.1|AF022186_79 unknown [Cyanidium caldarium]
          Length = 397

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/372 (15%), Positives = 114/372 (30%), Gaps = 17/372 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + Y+ + +   FL   +  VFI   +  + ++    SS   L I L+I    +P   
Sbjct: 23  TILDSYLFKSLVLPFLFCWVSFVFIELSVGCVNQLMSDLSSGLPLEISLQILLLYLPLYA 82

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P              N + +LL +  T  S   L + VL     +    +    II
Sbjct: 83  YFALPITSFFSGLISFRIKNYSNQLLGVYITSISFSRLFRSVLIFTSAICGTTWCISEII 142

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   ++++ L  KA L    S   E       +    +  K         ++I      
Sbjct: 143 IPVSSNSLQVLHRKASLCARNSICSETSSGIFTNYYNSQSKKAPLKELKGVLYIKHFNHL 202

Query: 182 QTHKIYY-------------AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
             +++ Y             A S   D   +  +  +  +       +        +  L
Sbjct: 203 NAYQLIYLDFNNENLKQLFLADSAKFDHFSRNWLFENMHIFSFDYDKELFVDSFNINMNL 262

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
              S     +    N    S       +   Y+        S+  ++L+  L+   F  I
Sbjct: 263 CNLSILDLKLNAVINKSQFSPFWMNAASIKMYKELSHLKTYSKSWRKLSLRLYQKYFTPI 322

Query: 289 SIVAA----DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           S +            R + +    FI + I+F  +         +      I   ++   
Sbjct: 323 SSIFLYSTGALMGSFRYKTQYLSFFIGILIAFQFYLSTFVTESAVILGIIPIYFSFIVPT 382

Query: 345 CISSIFLLMIKK 356
            ++ I LL++++
Sbjct: 383 SLTVILLLVLRR 394


>gi|15605574|ref|NP_220360.1| hypothetical protein CT839 [Chlamydia trachomatis D/UW-3/CX]
 gi|76789584|ref|YP_328670.1| permease [Chlamydia trachomatis A/HAR-13]
 gi|237803271|ref|YP_002888465.1| putative membrane transport protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237805192|ref|YP_002889346.1| putative membrane transport protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311680|ref|ZP_05354250.1| putative membrane transport protein [Chlamydia trachomatis 6276]
 gi|255317981|ref|ZP_05359227.1| putative membrane transport protein [Chlamydia trachomatis 6276s]
 gi|3329310|gb|AAC68436.1| hypothetical protein CT_839 [Chlamydia trachomatis D/UW-3/CX]
 gi|76168114|gb|AAX51122.1| predicted permease [Chlamydia trachomatis A/HAR-13]
 gi|231273492|emb|CAX10408.1| putative membrane transport protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274505|emb|CAX11301.1| putative membrane transport protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296436395|gb|ADH18569.1| putative membrane transport protein [Chlamydia trachomatis G/9768]
 gi|296437326|gb|ADH19496.1| putative membrane transport protein [Chlamydia trachomatis G/11222]
 gi|296438254|gb|ADH20415.1| putative membrane transport protein [Chlamydia trachomatis G/11074]
 gi|297140755|gb|ADH97513.1| putative membrane transport protein [Chlamydia trachomatis G/9301]
 gi|297748967|gb|ADI51513.1| Predicted permease [Chlamydia trachomatis D-EC]
 gi|297749847|gb|ADI52525.1| Predicted permease [Chlamydia trachomatis D-LC]
          Length = 354

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/348 (11%), Positives = 113/348 (32%), Gaps = 9/348 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      ++    ++ +   L ++ I+ +  + + ++ ++        + K++ Y IP +
Sbjct: 1   MPILWKVLIFRYLKTTVFCTLSLICISIISSLQEIVSYIA-KDVPYATVFKVTAYQIPYL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP + P    +    +   ++ N ++  +  +G S+  +I PVL  + +L  F F + + 
Sbjct: 60  LPFILPASCFISAFTLFRKLSDNNQITFLKASGASQGMIIFPVLIASGVLCCFNFYTCSE 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI---SKYNPNNTLQGIFIVD 177
           +   CR    +  A   +      L+       D               N  +      +
Sbjct: 120 LASICRFQTGKEIANIAMTSPALLLQTLQKKENDRIFIAIDHCGKSKFDNVVIALKHNQE 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +    +          +  + +++           + + +    ++         ++T
Sbjct: 180 ISNIGFIETIIPDVNKDSVQAKNVLVISKIPLFSEARTSNPNEFYLETLDEFLIPKITAT 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +    +         P         +    + +E  +R+   L         +     + 
Sbjct: 240 LFAGKSYMKTRTDYLPWKQLI----QDARLHLAEILRRIAIGLLCSTMTFSGLALGTYKP 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
             R+   I+ +F  L++ F +  G + I        +  P L  +L  
Sbjct: 296 RFRKPVLIYALFPILNLIFLI-VGKNTIHPISAVMLFLFPQLLSWLIF 342


>gi|262277385|ref|ZP_06055178.1| putative permease, YjgP/YjgQ family [alpha proteobacterium HIMB114]
 gi|262224488|gb|EEY74947.1| putative permease, YjgP/YjgQ family [alpha proteobacterium HIMB114]
          Length = 365

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 104/357 (29%), Gaps = 4/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI---P 58
           ++   Y+++    S ++  +    +  +   +Q I        S N LL++        P
Sbjct: 7   RTLIKYLIKEFSFSLMIFTVIFSSLIILTTFIQEITFFQEKEVSDNFLLRMLLLTFIKSP 66

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
           T++   + F F            +N E++ I  +G S   +       +  L I + I  
Sbjct: 67  TLIINSSSFIFLFAGIFFYVKFMKNNEIVPISLSGFSMNFITLVPGIFSFFLGIVIIIIF 126

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           + I  +     + +            +     +  +      I     +      F    
Sbjct: 127 SPISSELSKYYESIKKNYSKNDNLIVMSATGIWIKEKK-NDNIYIIRADKLSGNDFAKLK 185

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             +            I+ D   I+ N+ ++   + +S   +I       +   +  +   
Sbjct: 186 NISIYTFSMNKFKERINGDNGIIVKNNLKITPANLVSDVRNISLNSYTYISKINLENIKN 245

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                D    + +    N+        E    +FHK L+         ++S     K   
Sbjct: 246 YFVNADTFSIWSVKNALNDVRKMGYFGEEIIIKFHKYLSLPFLLFAMIVLSTFFTIKMNF 305

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                    + I   I    F+  S  + K  + P  + +    +        ++I 
Sbjct: 306 TFNNFIYAFLGILTGIIVYFFYDLSIAVGKSGKLPLILSVWMPVILINVFSIYILIN 362


>gi|268679754|ref|YP_003304185.1| permease YjgP/YjgQ family protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617785|gb|ACZ12150.1| permease YjgP/YjgQ family protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 341

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 113/360 (31%), Gaps = 22/360 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+L+  G  F      + FI  ++  ++   L +    +   L  +  YL+P  
Sbjct: 1   MNRTSRYLLKHFGALFSSLFFILFFITSIVFFIKITALTAIIQMNFLELGTLYIYLLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +     L ++++  E +++   G +   + +  L LA  LS+ L ++  +
Sbjct: 61  LVYTLPITFFIALCITLFNLSKENETIVLFTLGYNPQKIARLFLLLATGLSLLLILNIFV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +          +    F+        +    L       +  +            
Sbjct: 121 LIPISKELNSNFIDYKKAEAKFNIKASEFGQKFSQWLVYIEKSDDQKHFSGVTLYQVPTP 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  ++  A +  I+     + LN  E         +I  + F+   + ++       + 
Sbjct: 181 NEDERLILANNALIENTDGKLRLNLEEGKIFEFKKNEIEQINFERMHINSQPKAGIGTIQ 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              +      +N                  E    L   LFP+   LI++          
Sbjct: 241 SVKEYWNGVFVNSKRAY-------------ELAFFLLIALFPLASTLIALSIGIVTYRYN 287

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           +      +F ++ I F     FS          ++     L +F ++      I  KY K
Sbjct: 288 KGGIYIAMFATIFIYFAAATLFST---------WHPQSAPLVVFILTFFIAYRIYLKYIK 338


>gi|108760212|ref|YP_631129.1| hypothetical protein MXAN_2918 [Myxococcus xanthus DK 1622]
 gi|108464092|gb|ABF89277.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 371

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/362 (10%), Positives = 102/362 (28%), Gaps = 12/362 (3%)

Query: 1   MK-SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+ +  +Y+LR   R  L     +V +  V+  + R  L +     +    ++  Y    
Sbjct: 1   MRGTLFIYVLRTYLRFALGILAGLVLVFVVVDFVDRAKLYTGPGW-VWDAAELYFYKAMM 59

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            +  + P    +     ++++ +  E+  I         L  P+L  + +  + L   + 
Sbjct: 60  SVQQLGPAALLLAAGTTVSALRKQGEVTAIRALTFGPSALYLPILVASFVACVGLVAFDE 119

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEE-NLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
            +       + +++ +                +    D    +   +     Q + +   
Sbjct: 120 RVATYSGRRVDEITTQRFNKWGDWRFYYTPKQWFRRGDNIFFLRGGSAQEGFQDVSVFTV 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS-PISKDISIMKFKSYTLQTESANSST 237
            ++   +     SG   ++     L D             +  +    Y L         
Sbjct: 180 TESFDLQRRLDASGMFPVEGMRWRLTDVVERTFDGEGKTSVRQLPEAEYDLGVAVTAFRI 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +      S L        +      + +    H R    +      L+ +  A    
Sbjct: 240 RPGRPEQMRASELREQIVARRDV-GLATKQFELALHNRFAYPMAAFPAALLGVGLAL--R 296

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLM 353
             R+      I   L  +  + WG   +   +       P +  +    L  + +  + +
Sbjct: 297 ANRRGHLTAAIIEGLLTAVAM-WGLMMVCRTLVLTERLSPGVAAWTPTVLLGLIAGAVWL 355

Query: 354 IK 355
            +
Sbjct: 356 QR 357


>gi|28198043|ref|NP_778357.1| hypothetical protein PD0107 [Xylella fastidiosa Temecula1]
 gi|182680670|ref|YP_001828830.1| permease YjgP/YjgQ family protein [Xylella fastidiosa M23]
 gi|28056103|gb|AAO28006.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
 gi|182630780|gb|ACB91556.1| permease YjgP/YjgQ family protein [Xylella fastidiosa M23]
 gi|307579131|gb|ADN63100.1| permease YjgP/YjgQ family protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 361

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 93/256 (36%), Gaps = 5/256 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SF+ + + ++ +     ++  +  ++       +LL   G    + 
Sbjct: 1   MPKLDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIADGHFPAKLLLSQLGLRFISY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I + G     ++  +L L + + + + +    
Sbjct: 61  LPLLLPLALMLGLLMSLGRLYRDSEMAVITSIGVGPGRMLPSILGLVLPVVVLIGVCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T   L  +A  ++  + LE   F  + D   + +S  + + T      + S+ 
Sbjct: 121 LAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVYLSSLSSDGTKLNAVFMQSQK 180

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESANS 235
                +  A+ G +       + + L DG+           +  ++ F          + 
Sbjct: 181 DDRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPADGAALNYRVLTFARNDALLPELSV 240

Query: 236 STIVLKANDQNLSFLL 251
                  +      L+
Sbjct: 241 VYDSNHPDILPTFNLI 256


>gi|260910242|ref|ZP_05916919.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635746|gb|EEX53759.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 630

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 91/261 (34%), Gaps = 7/261 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  FL +    +F+  +  + + ++ +     ++ +L +   ++   ++
Sbjct: 5   KKLDIFICKQFGMLFLGTFFICLFVLMMQFLWRYVDELVGKGLTMEVLAQFFWWMALMMV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     +++ ++EL  I + G S       ++ +  L+S+  F+ +N I
Sbjct: 65  PQALPLAILLSSLITFGNLSESSELTAIKSAGISLTRTFSSLVVVCSLISVTSFVFQNNI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN--NTLQGIFIVDSR 179
            P     + QL    +       + E +F+    +  I + K +         +    S 
Sbjct: 125 GPYSTIKLSQLLISMKQKSPELGIPEGVFYDGIPNSNIYVQKKDNQTGKFYGIMIYRMSN 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
             +  +I  A SG +    +       L +GE           +           E    
Sbjct: 185 SYEDSEIILADSGMLQTTAERKHLLLTLWNGEWFSNQSQEVGKNAAAPFRRETFLEKKTL 244

Query: 236 STIVLKANDQNLSFLLNPNPN 256
                   +   + L + +  
Sbjct: 245 IDFNGD-FNMTDAELFSGDAR 264



 Score = 40.0 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/93 (12%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
             ++  ++ E +K+    L  +IF  I    A    ++R+     P+ +S+ +    +  
Sbjct: 363 NRMIRQHKIEMYKKFLVSLSCLIFFFIG---APLGTIIRKGGLGIPVIVSVLVFIVYYIL 419

Query: 322 ---FSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                 +  +   + ++  +L   +    ++F+
Sbjct: 420 DNTGYQMARRGIWDVWFGELLATMVLTPLAVFV 452


>gi|15595153|ref|NP_212942.1| hypothetical protein BB0808 [Borrelia burgdorferi B31]
 gi|195941982|ref|ZP_03087364.1| hypothetical protein Bbur8_03794 [Borrelia burgdorferi 80a]
 gi|216264628|ref|ZP_03436620.1| putative permease, YjgP/YjgQ family protein [Borrelia burgdorferi
           156a]
 gi|218249833|ref|YP_002375306.1| putative permease, YjgP/YjgQ family protein [Borrelia burgdorferi
           ZS7]
 gi|221217616|ref|ZP_03589085.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 72a]
 gi|223889339|ref|ZP_03623926.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 64b]
 gi|224533064|ref|ZP_03673669.1| permease, YjgP/YjgQ family [Borrelia burgdorferi WI91-23]
 gi|224533456|ref|ZP_03674049.1| permease, YjgP/YjgQ family [Borrelia burgdorferi CA-11.2a]
 gi|225549381|ref|ZP_03770353.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 94a]
 gi|225550246|ref|ZP_03771205.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 118a]
 gi|226321273|ref|ZP_03796801.1| permease, YjgP/YjgQ family [Borrelia burgdorferi Bol26]
 gi|2688753|gb|AAC67159.1| predicted coding region BB0808 [Borrelia burgdorferi B31]
 gi|215981101|gb|EEC21908.1| putative permease, YjgP/YjgQ family protein [Borrelia burgdorferi
           156a]
 gi|218165021|gb|ACK75082.1| putative permease, YjgP/YjgQ family protein [Borrelia burgdorferi
           ZS7]
 gi|221192562|gb|EEE18780.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 72a]
 gi|223885260|gb|EEF56363.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 64b]
 gi|224512000|gb|EEF82396.1| permease, YjgP/YjgQ family [Borrelia burgdorferi WI91-23]
 gi|224513418|gb|EEF83776.1| permease, YjgP/YjgQ family [Borrelia burgdorferi CA-11.2a]
 gi|225369114|gb|EEG98568.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 118a]
 gi|225370009|gb|EEG99450.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 94a]
 gi|226233305|gb|EEH32056.1| permease, YjgP/YjgQ family [Borrelia burgdorferi Bol26]
 gi|312149740|gb|ADQ29811.1| putative permease, YjgP/YjgQ family [Borrelia burgdorferi N40]
          Length = 355

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 118/355 (33%), Gaps = 1/355 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +   ++ I  +FL   L  + +  +  +   +         L  +L I    +P    
Sbjct: 2   KIDKLFIKSIILTFLSMNLLFMILIMLGDLFVNLLNYLEKNIGLKDILYIYYLYLPKAFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N++ +++   E++ + + G     ++KP++ ++I +S+ LF  +N + 
Sbjct: 62  DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVPLTRILKPIILISIFISVVLFFFDNYLV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
               +    L   +            +     +   IK    + N     + I+     +
Sbjct: 122 IDTIARRDVLIKNSIGDSRSGDKTIIIRDFAREIYNIKSYDIDENTFANLMIIIKDNKDE 181

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
               Y         ++  +      V     I ++   +   +  ++       T++L +
Sbjct: 182 FQTRYDINKAEWKDNKWRLYGIREFVKVGKKIKENAYDVLDGTGIIKLAPDYIRTVMLSS 241

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              N + L+N        R    + +    ++    +   ++   +  +A   +  +   
Sbjct: 242 KALNFTKLINWISFLKAERLNYSDAFFDLLNRIFFSFRLILLSFTVGFIALALKKNIFIL 301

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             ++ I  ++     +   F+++      + Y         F I + F+  I +K
Sbjct: 302 SLLNSIAFAVVYVISI-VIFNFLADLGYLHIYIASSFTTIFFLIINFFVYRIVRK 355


>gi|218516795|ref|ZP_03513635.1| putative permease protein [Rhizobium etli 8C-3]
          Length = 102

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 61/92 (66%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 11  MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           +P+V PF   +  T  LT+MN ++EL +ID  
Sbjct: 71  IPVVLPFALVIAITQTLTTMNNDSELTVIDAA 102


>gi|54113817|gb|AAV29542.1| NT02FT0415 [synthetic construct]
          Length = 353

 Score = 60.8 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 122/339 (35%), Gaps = 11/339 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI R +  SFL+  +    + ++   L +++  +++  +  +++  +   +P +
Sbjct: 3   LNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSNNTANVSNFELIIN-TLIQLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    
Sbjct: 62  LYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  +  +            +    +      + +     +       +Q   + + R 
Sbjct: 122 IAPILQRQVDTNMVTYNTHDLWFKTPDGFMNIANIEPTNGKAYGIRKFMVQDNKVREIRY 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            ++       S ++   R+ I          S   K I I+   +  + +     S   +
Sbjct: 182 AESATYINDASANVFNIRKIIF-------PASDGQKHIDIVTNMTNAVWSNPLPISVAKV 234

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              + N     +   +      +  ++   +F + + Q L  +I  L+++  +       
Sbjct: 235 ITINDNNYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIG---ST 291

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
           +   +    +  +     F+  + I   I    +  PIL
Sbjct: 292 RSSTLILKLLLGAFFGFAFFIINQIFGPIALILHLPPIL 330


>gi|213423382|ref|ZP_03356370.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 207

 Score = 60.8 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 72/200 (36%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++                +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVPKDIQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+A    +    ++ L+ +  ++                     +   + 
Sbjct: 127 QGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELAGISIYAFNDQRRL 186

Query: 184 HKIYYAQSGSIDLDRQAIIL 203
             + YA S   D + +   L
Sbjct: 187 QSVRYAASAKFDPEHKVWRL 206


>gi|218661972|ref|ZP_03517902.1| putative permease protein [Rhizobium etli IE4771]
          Length = 115

 Score = 60.8 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 68/103 (66%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 11  MKLLETYILRGVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPV 103
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  LI+P+
Sbjct: 71  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSILIRPI 113


>gi|188997596|ref|YP_001931847.1| permease YjgP/YjgQ family protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932663|gb|ACD67293.1| permease YjgP/YjgQ family protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 356

 Score = 60.8 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 127/361 (35%), Gaps = 14/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI + +    L+       ++ +I++++ +      T   + L       +P  
Sbjct: 1   MRILDAYIYKKLFVYLLIIFPSFSIVSALIELIEILKKA--KTIEFSTLTLYILTKLPEN 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    + +   +    ++ E+  +   G S   +   ++  +IL+ I   I+   
Sbjct: 59  AYYIIPISLIVASFMFINDSIKSREIYPVILNGISLNYISIRIIIFSILVVILQVINLET 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLE---ENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
           + PK     + L  K +       ++     ++ ++ ++ ++    ++ N+ +    I  
Sbjct: 119 VMPKTNQIYQTLYLKLKNQQEDEKVKGIAYKMWLKIGENQFLYFDFFDLNSKVGKKLIFI 178

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP-ISKDISIMKFKSYTLQTESANSS 236
           S D + + IY  ++    +    I +++G + + +   +  +     K   +  +  N  
Sbjct: 179 SFDKEFNPIYRLEAEDFKVSLDKIEVSNGRLIKINSLDNIIVEKFDKKILDINIDVENIK 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            I+L     ++S L     +           + S+F+++L   + P +  +  +      
Sbjct: 239 KIILAKKPVSISELY-KIASISQAYGYESYYFWSKFYEKLATVIAPFVLTVFILGFIWT- 296

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                      I      +   ++G S I    E        ++ F      I   M+  
Sbjct: 297 ------NNKLYITSGFLATVFYWYGTSLISAVAEVGNIPYFSIFFFDVVFLVIGFYMLNS 350

Query: 357 K 357
           K
Sbjct: 351 K 351


>gi|313680813|ref|YP_004058552.1| permease yjgp/yjgq family protein [Oceanithermus profundus DSM
           14977]
 gi|313153528|gb|ADR37379.1| permease YjgP/YjgQ family protein [Oceanithermus profundus DSM
           14977]
          Length = 346

 Score = 60.8 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 111/342 (32%), Gaps = 15/342 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M +   Y+LR +G   L     +V +     + + +  + +       + +   + +P  
Sbjct: 1   MNTLSRYLLREVGAYLLGGLAVVVLLLLGGVLFEVLAPLLARGADPLSIGQYLAHRVPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  +       L+ M  ++EL ++  +G  R  ++  ++    LL++  F++   
Sbjct: 61  LVRGLPIAYLFALLLALSRMAEDSELKVLLASGIPRERVLGVLVGFGALLALVGFVAGES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+      Q+  +A LA   + L+   FFR      I + + +         + +   
Sbjct: 121 WVPRELQRANQVLREAILAKPRALLQPGTFFRDAYGRTIYVGQVDGQGFGDVRVLSEGEV 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +  + + G + LD    +  DG   R        +I +F+   L  E    S    
Sbjct: 181 LTAKRGRF-EPGRLVLDAGMRVTFDGSRPR--------TITEFERGLLPLEDLAVSPP-T 230

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K  D  L+ L         +         + + ++  +    V       + A   A   
Sbjct: 231 KPADLPLAELRRRIAEYKKF-GRPYHAEATAYWRKWAEPAASVA----FALFAVALAFWM 285

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
                    + +      ++    +   + +     P    +
Sbjct: 286 LGGSRSLGMVGVVTLTFFYYATWSVFRIMGEQGVLAPWFAAW 327


>gi|228470134|ref|ZP_04055043.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
 gi|228308272|gb|EEK17127.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
          Length = 683

 Score = 60.8 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 87/203 (42%), Gaps = 1/203 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K   ++++R      LM+ L   F+  +  + Q I+ +      + +LL++  Y    VL
Sbjct: 11  KIMYIFMVRSFLPLLLMTILICWFVVLMQFLWQHIDDLVGKGMDVGVLLEVIFYAGLYVL 70

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++    ELL + + G     ++KP++ L   +++ LF+  +  
Sbjct: 71  PTAVPLGVLLASLMTFGNLGERLELLAMKSAGVPLSKIMKPLVILVTCIALGLFVYLDRG 130

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRD 180
             K    + Q+   A+ A     L + +FF   D   I +   +   +TL  + I D  +
Sbjct: 131 VQKASVRVYQILFSARYARPELELPKGIFFNGIDGYSIYVGDKDVATSTLYNVMIYDLSE 190

Query: 181 TQTHKIYYAQSGSIDLDRQAIIL 203
            +  +I  A +G + +D   + L
Sbjct: 191 QRAPRIILADTGRLLMDDSKLYL 213



 Score = 44.2 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 270 SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
            E H++ T  +  ++F  +    A   A+VR+     P+ +++ + F +++       K+
Sbjct: 424 QEMHRKFTFPVACLLFFFVG---APLGAIVRKGGVGTPMVLAV-LIFIIYYVIDTFGLKM 479

Query: 330 EQNPYYIPI--LYLFLFCISSIFLLMIKK 356
             +        ++L    I  +   +  K
Sbjct: 480 INSGQIPVWAGMWLSSAVILPLGAFLTYK 508


>gi|219684936|ref|ZP_03539877.1| permease, YjgP/YjgQ family [Borrelia garinii PBr]
 gi|219671674|gb|EED28730.1| permease, YjgP/YjgQ family [Borrelia garinii PBr]
          Length = 355

 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 109/355 (30%), Gaps = 1/355 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +   ++ I  +FL   L  + +  +  +   +            +L I    +P    
Sbjct: 2   KIDKLFVKSIILTFLSMNLLFMILIILGDLFVNLLSYLEKNIGFKDILYIYYLYLPKAFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N++ +++   E++ + + G S   +++P++ +++ +S  LF  +N + 
Sbjct: 62  DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVSLTRILRPIILISLFISFVLFFFDNYLV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
               +    L   +      S     +     +   IK    N N   + + I+     +
Sbjct: 122 IDTVARRDLLIKNSIGNSGSSDKTIIIRDLAREIYNIKSYDINENAFSKLMIIIKDSKDE 181

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
               Y         ++  +      V     I ++   +   +  ++ E     T++L +
Sbjct: 182 FQTRYDIDKAEWKDNKWRLYGIREFVKVGRKIKENAYDILDGTGIIKLEPDYIRTVMLSS 241

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              N + L+N   +              +   R+      ++        A         
Sbjct: 242 KALNFTKLIN-WISFLKSEHLNYSDALFDLLNRVFFSFRLILLSFTVGFIALALKKNIFI 300

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             +        +       F+++      + Y         F I +  +  I +K
Sbjct: 301 LSLLNSIAFAVVYVISIVIFNFLADLGYLHIYVASSFTTVFFLIINFLVYRIVRK 355


>gi|237752465|ref|ZP_04582945.1| predicted protein [Helicobacter winghamensis ATCC BAA-430]
 gi|229375954|gb|EEO26045.1| predicted protein [Helicobacter winghamensis ATCC BAA-430]
          Length = 357

 Score = 60.8 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/359 (12%), Positives = 118/359 (32%), Gaps = 13/359 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F  Y+     + F    + +      I +++ ++ + S   S N+ + +  Y     
Sbjct: 1   MKLFFRYVSFLYLKYFFYLFVSLECFFVAIDLVKFLDDLPS---SANLFILLLAYDFMYA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    +L ++ ++++       G ++I +  P+  L+  +++        
Sbjct: 58  SQFILPLSLILAQIVLLINLLKSSQFTAFLALGFAKIKIFYPIFLLSFCITLLFIALNAT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                +                   + +LF + + +       Y      +G+ + +   
Sbjct: 118 PFAYAKER----VDLIIDQGFVGNYKSDLFVKYNQNYIYFKKIYPLLQRAEGVIVYEINP 173

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI---SKDISIMKFKSYTLQTESANSST 237
           TQ       +S     + Q  IL +  +          K+   ++ ++            
Sbjct: 174 TQNSLTRIVESKMAQFNGQDWILENVTITTLDDNLELGKNPLKIQKETTYKTLHDFKPKI 233

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLE--TYRSEFHKRLTQWLF-PVIFGLISIVAAD 294
           +      Q    +L+        + +       R   +  L   LF P+I   +++   +
Sbjct: 234 LDNIYEKQGSISILDAFEAFMLLKEQNANTQKVRGALYNLLFFPLFAPLIMICLAVFIPN 293

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                        + + + I++G+F+ FS +       P +  I+ +F   ++S F   
Sbjct: 294 SNRYANFSLMTLAMILGVLITWGIFFSFSKLSISGFLQPEFSVIMPIFTLFLASSFCFY 352


>gi|166154183|ref|YP_001654301.1| putative membrane transport protein [Chlamydia trachomatis 434/Bu]
 gi|166155058|ref|YP_001653313.1| putative membrane transport protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335428|ref|ZP_07223672.1| putative membrane transport protein [Chlamydia trachomatis L2tet1]
 gi|165930171|emb|CAP03655.1| putative membrane transport protein [Chlamydia trachomatis 434/Bu]
 gi|165931046|emb|CAP06609.1| putative membrane transport protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 354

 Score = 60.4 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/348 (11%), Positives = 113/348 (32%), Gaps = 9/348 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      ++    ++ +   L ++ I+ +  + + ++ ++        + K++ Y IP +
Sbjct: 1   MPILWKVLIFRYLKTTVFCTLSLICISIISSLQEIVSYIA-KDVPYATVFKVTAYQIPYL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP + P    +    +   ++ N ++  +  +G S+  +I PVL  + +L  F F + + 
Sbjct: 60  LPFILPASCFISAFTLFRKLSDNNQITFLKASGASQGMIIFPVLIASGVLCCFNFYTCSE 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI---SKYNPNNTLQGIFIVD 177
           +   CR    +  A   +      L+       D               N  +      +
Sbjct: 120 LASICRFQTGKAIANIAMTSPALLLQTLQKKENDRIFIAIDHCGKSKFDNVIIALKHNQE 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +    +          +  + +++           + + +    ++         ++T
Sbjct: 180 ISNIGFIETIIPDVNKDSVQAKNVLVISKIPLFSEARTSNPNEFYLETLDEFLIPKITAT 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +    +         P         +    + +E  +R+   L         +     + 
Sbjct: 240 LFAGKSYMKTRTDYLPWKQLI----QDARLHLAEILRRIAIGLLCSTMTFSGLALGTYKP 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
             R+   I+ +F  L++ F +  G + I        +  P L  +L  
Sbjct: 296 RFRKPVLIYALFPILNLIFLI-VGKNTIHPISAVMLFLFPQLLSWLIF 342


>gi|325268898|ref|ZP_08135523.1| hypothetical protein HMPREF9141_0732 [Prevotella multiformis DSM
           16608]
 gi|324988870|gb|EGC20828.1| hypothetical protein HMPREF9141_0732 [Prevotella multiformis DSM
           16608]
          Length = 640

 Score = 60.4 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 86/222 (38%), Gaps = 2/222 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  +++I R  G  F  +    +F+  +  + + ++ +     S+++L +   Y+   ++
Sbjct: 5   RKLDIFIARQFGMLFAGTFFISLFVLMMQFLWRYVDDLIGKGLSVDVLGQFFWYMSLMMV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I + G S +   + ++ +++L++   F  +N +
Sbjct: 65  PQALPLAILLSSLISYGNLGESSELTAIRSAGISLVQSFRGLIVISVLIACGSFYFQNNV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN--PNNTLQGIFIVDSR 179
            P  +  I QL    +       + E +F+    +  + + K +    +    +    + 
Sbjct: 125 GPSAQKHIAQLLISMKQKSPELEIPEGIFYDGIPNTNLYVEKKDLKTGHLYNIMVYRMTD 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM 221
             +   I  A SG +    +   L       +   +     M
Sbjct: 185 SYEDQAIILADSGMLQSTAEKKHLVLNLWSGEWFENMRSQEM 226


>gi|291296717|ref|YP_003508115.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
 gi|290471676|gb|ADD29095.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
          Length = 338

 Score = 60.4 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/350 (13%), Positives = 98/350 (28%), Gaps = 21/350 (6%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+LR     +L+  L  V +     +         +   +  ++++  Y +P  L +
Sbjct: 2   LPRYLLRETLSLYLLGVLLFVGLITFDLLSSLSGAFLRARTPVGEIVQMVAYRVPHTLGI 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P          L    R +EL      G      I PVL LA+ +   + ++E  ++P
Sbjct: 62  ALPLGLVFALLVALARWIRQSELKAAYAAGIPPRVFIGPVLLLALAVGAVVLLNEGWLKP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +   + L  K       S +     +           +  P    Q         ++ 
Sbjct: 122 IAQERFEALQYKIYYGSEPSGVLTERTYTPQGLGIYYAQRIYPPPEGQ-------TGSRL 174

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
             +   +SG      +  +   G    ++    D S   F+                 + 
Sbjct: 175 EGVRVVESGGSVWSAERGVWVSGAWRLQNAYRVDPSGQIFQEAEHPLPFPVGVQPKAVSY 234

Query: 244 D-QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +   +  L      +P  +            +R    +  V+   ++IV           
Sbjct: 235 EALRMPELHAVASADPAAQFP--------LARRYANAVGTVVLAWLAIVIGLSLRES--- 283

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                    + + FG +  F+        +       +L       + LL
Sbjct: 284 --AWAFIAVVGLIFGYWTLFTLSAQFARFDLLGAYGAWLPNIVYGGLALL 331


>gi|289612795|emb|CBI60020.1| unnamed protein product [Sordaria macrospora]
          Length = 187

 Score = 60.4 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 71/185 (38%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + Y+ R I      + L    +  + ++L+  + V++    ++++ ++   L+P  
Sbjct: 1   MPSIDRYMARLIAVPLFSTLLISAMLLVLDRMLRLFDFVAAEGGPVSVVWRMLANLLPEY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +        +  ++EL ++   G S   L++     A +L+         
Sbjct: 61  LGLGIPIGLMLGILLAFRKLATSSELDVMLGVGMSYWRLLRVPFIYATVLAAANLAIVGY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I+P  R   + L  + +     + ++   F +L + + ++I +   +        V +  
Sbjct: 121 IQPLARYNYEALRFELRTGALGASIKVGEFTKLGERMTLRIEESRDSGADLRGIFVQASR 180

Query: 181 TQTHK 185
                
Sbjct: 181 PDGQW 185


>gi|332976301|gb|EGK13158.1| permease YjgP/YjgQ [Psychrobacter sp. 1501(2011)]
          Length = 455

 Score = 60.4 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 42/134 (31%), Gaps = 2/134 (1%)

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
              +L     +   +  +A D +L+ L +    N +     L  +   F ++L      +
Sbjct: 323 DVISLPISPNSVYLLTRRAEDLSLTQLYDHKQFNASQGTRSL-EHEVAFWQKLLSPFAIL 381

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
              +++                  + +   + F      +  +         + ++ L +
Sbjct: 382 SLVIVACSFVFGSLRTHSLGLRIVVALIFGLLFSYIQDLTSFVSLATGASPLL-MVLLPI 440

Query: 344 FCISSIFLLMIKKK 357
              + +   +IK++
Sbjct: 441 IASALLGFYLIKRQ 454



 Score = 55.4 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 58/190 (30%), Gaps = 1/190 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    Y+      + L + L +  +  V   L  +  + S + +    L    Y  P  L
Sbjct: 19  KIISRYVKTNALFAMLFAVLGLWALQIVFAYLAELEDI-SDSYTYFDALTYILYKSPYFL 77

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
              TP    +     L  +  N+EL+++   G S   ++  VL  A +  I        +
Sbjct: 78  EQFTPTGALLGAVIGLGLLANNSELIVMRAAGLSIYRIVSWVLQPAFIFVILALGINQYV 137

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+      Q+       L        L          +      +N +   +   + + 
Sbjct: 138 LPETNLMANQIRKPDTALLASVNGYWTLQNAPAVGETAQKEGATGHNIIYIDYADANGNI 197

Query: 182 QTHKIYYAQS 191
              K ++   
Sbjct: 198 GKVKRWHLDK 207


>gi|260592583|ref|ZP_05858041.1| putative permease [Prevotella veroralis F0319]
 gi|260535353|gb|EEX17970.1| putative permease [Prevotella veroralis F0319]
          Length = 644

 Score = 60.4 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 84/222 (37%), Gaps = 2/222 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  F  +    +F+  +  + + ++ +     S+ +L +   Y+   ++
Sbjct: 5   KKLDIFIAKQFGMLFAGTFFISLFVLMMQFLWRYVDDLIGKGLSMEVLGQFFWYMSLMMV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I + G S I   + ++ ++++++   F  +N I
Sbjct: 65  PQALPLAILLSSLIAYGNLGESSELTAIKSAGISLIQSFRGLIVISVIIAGASFYFQNNI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN--NTLQGIFIVDSR 179
            P  +  + QL    +       + E +F+       + + + +    +    +    + 
Sbjct: 125 GPMAQKNMAQLLISMRHKSPELEIPEGVFYDGIPQTNLYVERKDMKSGHLYNIMVYRMTD 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM 221
             +   I  A SG +    +   L       +   +     M
Sbjct: 185 SYEDQAIILADSGMLQSTAEKKHLVLNLWSGEWFENMRSQEM 226



 Score = 37.3 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 8/106 (7%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           L+      +   +++  +  EF  + T  L  ++F  I    A   A++R+     PI +
Sbjct: 353 LDFKSMITSDGDKMIRQHEIEFINKFTISLICIVFFFIG---APLGAIIRKGGLGIPIIV 409

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPI-----LYLFLFCISSIFL 351
           S+ +    +   +       Q  + I       + + +   +    
Sbjct: 410 SVLVFIVYYILDNTGYRMSRQGDWAIWFGRGLSMAVLVPMAAFFTY 455


>gi|240948566|ref|ZP_04752939.1| hypothetical protein AM305_06766 [Actinobacillus minor NM305]
 gi|240297074|gb|EER47645.1| hypothetical protein AM305_06766 [Actinobacillus minor NM305]
          Length = 309

 Score = 60.4 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 92/297 (30%), Gaps = 15/297 (5%)

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +  ++ P    +     L      +E+ ++   G  +  L K  LFL+I  +     +  
Sbjct: 1   MAQLMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLAKVALFLSIFTTALAVYNVF 60

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL--YIKISKYNPNNTLQGIFIVD 177
            + P   +   +L A+A+    FS L    F      +     I+          +F  D
Sbjct: 61  WLTPWAINKQSELLAEAKANPRFSALSAGQFMTAGGYVLFIDNINYDQNKLNDIYVFQPD 120

Query: 178 SRDTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
            +      +  A SG +       Q + L +   +  +    D  I  F++YT      +
Sbjct: 121 QQKKNRPSVIVADSGELKGLPNGDQILTLENSTRYEGTAKVADFRISHFENYTAYLGHQD 180

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
             +             L    +      +     R+E   R        I  L+++  + 
Sbjct: 181 VDSD----------EKLVQRADWAKLVADKSPEARAELQWRFALIFATPIMALLAVPMSS 230

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                 +  K+ P  +   I F +           + +P  +  +    F I  I +
Sbjct: 231 VNPRQGRFAKLLPALLLYLIYFLLQSTLKSSGASGKLDPTILMPVVSVAFLILGIVM 287


>gi|168701113|ref|ZP_02733390.1| hypothetical protein GobsU_16419 [Gemmata obscuriglobus UQM 2246]
          Length = 410

 Score = 60.4 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/413 (9%), Positives = 114/413 (27%), Gaps = 60/413 (14%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            +    I   + R FL+S   +  +  V+  +Q+ + +     SL  L++    L+P++L
Sbjct: 4   TTLNRMIFWELVRVFLLSLGSLTGLVLVVMSVQQASQL---GLSLAQLVRAVPLLVPSIL 60

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P         V   +  + E++ +   G     ++KP L L +L +       +  
Sbjct: 61  PIAIPATTLFAACVVYGRLAHDNEVIALKAAGVHLFGIVKPTLLLGVLTTATTAALAHST 120

Query: 122 EPKCRSTIKQL-----SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            P+ +                  +       +        +     K   +  ++     
Sbjct: 121 IPRTQQMFWDEILSDPEEVLYNMIRRDRCLRHPSLPNVLYVRDVEGKRLIDVVVKRRIKE 180

Query: 177 DSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHR------KSPISKDISIMKFKSYTLQ 229
               T    +  Y     +   +  + +  G +            +   S     ++ + 
Sbjct: 181 KDPRTGAEVVMGYDMVARMHEAQLRVDVAAGTLSIEPDRLVIDGKNASGSAASSGAFVMD 240

Query: 230 TESANS-STIVLKANDQNLSFL-------------------------------------- 250
              + +     LK +      L                                      
Sbjct: 241 LPDSVTGKEARLKTSTLTWDELPERAAGVAAKLDRITRERAARQAEINQMDPNLRANAQA 300

Query: 251 -LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIF 309
            +           + L   ++E H R    +  ++F L+          + +   +    
Sbjct: 301 QIEGYNFEIAGTTKQLRNLQAEVHARPALAVSCLVFALVGCPVGV---YLNRSDYLSTFM 357

Query: 310 ISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIKKKYTK 360
           +    +  V++        + ++      L  +     + ++ +L+  +   +
Sbjct: 358 MCFLPTLLVYYPLLLAGTDMGKSGRLPMALGCWAADIVMGAVGVLLAWRLLRR 410


>gi|154174950|ref|YP_001408879.1| methionyl-tRNA formyltransferase [Campylobacter curvus 525.92]
 gi|112803667|gb|EAU01011.1| methionyl-tRNA formyltransferase [Campylobacter curvus 525.92]
          Length = 356

 Score = 60.4 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 99/357 (27%), Gaps = 4/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +  +  Y+     +SFL+    +      I +L  +  + +   S N+ L   G  + + 
Sbjct: 3   LNLYARYVGWVYLKSFLIVFFALELFYVGIDLLTNLKDLPN---SANLQLLYVGLTLLSA 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P            +M R+ EL+     G S+  LI P  F+A+ ++         
Sbjct: 60  VSYVMPISLVFALIISHINMVRSNELVSFYALGVSKNGLILPPFFIALAVTFLYVGLNCT 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    K ++     + + +        +      +  S+ N  +            
Sbjct: 120 PFAYAYDYQKSIAKNTSFSKSTTDSFLKFEGKFIYIKELSASQKNAKDVRIFDINGTDLL 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           + T         +    +        +  R       +            +  +  +   
Sbjct: 180 STTFADGAKFKNNHWQLQDVNQTLLPKDLRLGQKGLSVQNFDELDALSGFKPKSIESANA 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
               +                   L++ +S F+       F     L+            
Sbjct: 240 ADGARFSIPDTLDFIFTFKNEGVELDSVKSAFYSLAIAPFFAPFLILVLYYHLPMTGRFF 299

Query: 301 QRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  IF+ +++   GV +  +         P +  +L + L     I+LL   +
Sbjct: 300 NLAFASFIFVVITLVIWGVLFVLTRFAQSSVILPEFGIVLPVILLFAYGIYLLKTHR 356


>gi|15618904|ref|NP_225190.1| hypothetical protein CPn0996 [Chlamydophila pneumoniae CWL029]
 gi|15836527|ref|NP_301051.1| hypothetical protein CPj0996 [Chlamydophila pneumoniae J138]
 gi|16752031|ref|NP_445397.1| hypothetical protein CP0859 [Chlamydophila pneumoniae AR39]
 gi|4377325|gb|AAD19133.1| CT839 hypothetical protein [Chlamydophila pneumoniae CWL029]
 gi|7189771|gb|AAF38648.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
 gi|8979369|dbj|BAA99203.1| CT839 hypothetical protein [Chlamydophila pneumoniae J138]
          Length = 357

 Score = 60.4 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/364 (13%), Positives = 125/364 (34%), Gaps = 14/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      ++    ++     L ++ I+ +  + + +  ++      + +L++  Y IP +
Sbjct: 1   MPILWKVLIFRYLKTAAFCTLSLICISIISSLQEIVAYIA-KDVPYDTVLRLMAYQIPYL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP + P    +   ++   ++ N  +  +  +G S+  ++ PVL ++  +    F + + 
Sbjct: 60  LPFILPGSCFVSAFSLFRKLSDNNHMTFLRASGASQSIIMFPVLMVSGAICCLNFYTCSE 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +   CR    +  A   +      L      + +++       +   +    + +    +
Sbjct: 120 LASICRYQTCKEIANMAMTSPALLL--QTLQKKENNRIFIAVDHCAKSKFDNVIVALKGN 177

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS----KDISIMKFKSYTLQTESANSS 236
            +   +   +S   D  +  +   D     K P S       S  +F   TL        
Sbjct: 178 NEISHVGIIKSIIPDTTKDTVKAKDVVFISKLPDSLTESSSPSSQRFYIETLDELLIPKI 237

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  L A    L    +  P     +  L  ++  E  +R+      +      ++    +
Sbjct: 238 TSTLFAGKSYLKTRTDYLPWKQLVKQSLKHSHLPETLRRVAIGFLCITLTYAGMILGIHK 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R+        I+L   F +      I+ K  +N     +L++F   +S +       
Sbjct: 298 PRFRKS-------IALYFIFPILDLILLIVGKNTKNLPLAFMLFVFPQLVSWVVFAARAY 350

Query: 357 KYTK 360
           + ++
Sbjct: 351 RESR 354


>gi|29840522|ref|NP_829628.1| YjgP/YjgQ family protein [Chlamydophila caviae GPIC]
 gi|29834871|gb|AAP05506.1| YjgP/YjgQ family protein [Chlamydophila caviae GPIC]
          Length = 357

 Score = 60.4 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/362 (10%), Positives = 119/362 (32%), Gaps = 16/362 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      ++    ++     L ++ I+ +  + + ++ ++        +L+++ Y IP +
Sbjct: 1   MPILWKVLIFRYLKTVTFCTLSLICISIISSLQEIVSYIA-KDVPYLTVLRLTAYQIPYL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP + P    +    +   ++ N ++  +  +G S+  +  P+L ++  +    F + + 
Sbjct: 60  LPFILPVSCFISAFALFRGLSDNNQITFLKASGASQGIITFPILMVSCAICCINFYTCSE 119

Query: 121 IEPKCRSTIKQLSAKAQLALTF---SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
           +   CR    +  A   +         L++    R+   +         N  +      +
Sbjct: 120 LASICRFQTCKEIANMAMTSPTLLLQTLQKKENNRIFITVDHCAKSKFDNVIIALKRDKE 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF-KSYTLQTESANSS 236
             +    K       +  ++ + +++        +      S   + ++         +S
Sbjct: 180 IANVGIIKTIIPDVANDTVEARDVVMISKLPSTLTEQHSSNSKEYYIETLDEMLIPKITS 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T+    +         P       +      +  E  +R++  L  +      +V    +
Sbjct: 240 TLFAGKSYMKTRTDYLPWKQ--LVKQSFSHAHLPETLRRISIGLLCITLTYSGMVLGTYK 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R+   ++ IF  + +   +           +     +P   +F+      +++   +
Sbjct: 298 PRFRKSITLYCIFPVMDLILLI---------VGKNTTTLLPAFMMFIIPQVITWIVFSIR 348

Query: 357 KY 358
            Y
Sbjct: 349 AY 350


>gi|288802960|ref|ZP_06408396.1| putative permease [Prevotella melaninogenica D18]
 gi|288334477|gb|EFC72916.1| putative permease [Prevotella melaninogenica D18]
          Length = 640

 Score = 60.4 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 82/222 (36%), Gaps = 2/222 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  F+ +    +F+  +  + + ++ +     S+++L +   Y+   ++
Sbjct: 5   KKLDIFIAKQFGMLFMGTFFISLFVLMMQFLWRYVDDLIGKGLSMDVLGQFFWYMSLMMV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I   G S I   + ++ ++I ++   F  +N +
Sbjct: 65  PQALPLAILLSSLISYGNLGESSELTAIKAAGISLIQSFRGLIVVSIFIAFGSFYFQNNV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN--PNNTLQGIFIVDSR 179
            P     I QL    +       + E +F+       + + K +    +    +    + 
Sbjct: 125 GPIAHKHIAQLLISMKQKSPELEIPEGIFYDGIPQTNLYVEKKDLKTGHLYNIMVYRMTD 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM 221
             +   I  A SG +        L       +   +     M
Sbjct: 185 SYEDQAIILADSGMLQSTADKKHLVLNLWSGEWFENMRSQEM 226


>gi|302345159|ref|YP_003813512.1| permease, YjgP/YjgQ family [Prevotella melaninogenica ATCC 25845]
 gi|302149884|gb|ADK96146.1| permease, YjgP/YjgQ family [Prevotella melaninogenica ATCC 25845]
          Length = 640

 Score = 60.4 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 82/222 (36%), Gaps = 2/222 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  F+ +    +F+  +  + + ++ +     S+++L +   Y+   ++
Sbjct: 5   KKLDIFIAKQFGMLFMGTFFISLFVLMMQFLWRYVDDLIGKGLSMDVLGQFFWYMSLMMV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I   G S I   + ++ ++I ++   F  +N +
Sbjct: 65  PQALPLAILLSSLISYGNLGESSELTAIKAAGISLIQSFRGLIVVSIFIAFGSFYFQNNV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN--PNNTLQGIFIVDSR 179
            P     I QL    +       + E +F+       + + K +    +    +    + 
Sbjct: 125 GPIAHKHIAQLLISMKQKSPELEIPEGIFYDGIPQTNLYVEKKDLKTGHLYNIMVYRMTD 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM 221
             +   I  A SG +        L       +   +     M
Sbjct: 185 SYEDQAIILADSGMLQSTADKKHLVLNLWSGEWFENMRSQEM 226


>gi|219685681|ref|ZP_03540495.1| permease, YjgP/YjgQ family [Borrelia garinii Far04]
 gi|219672797|gb|EED29822.1| permease, YjgP/YjgQ family [Borrelia garinii Far04]
          Length = 355

 Score = 60.4 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/355 (11%), Positives = 108/355 (30%), Gaps = 1/355 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +   ++ I  +FL   L  + +  +  +   +            +L I    +P    
Sbjct: 2   KIDKLFVKSIILTFLSMNLLFMILIILGDLFVNLLSYLEKNIGFKDILYIYYLYLPKAFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N++ +++   E++ + + G S   +++P++ +++ +S  LF  +N + 
Sbjct: 62  DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVSLTRILRPIILISLFISFVLFFFDNYLV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
               +    L   +            +     +   IK    N N   + + I+     +
Sbjct: 122 IDTVARRDLLIKNSIGNSGSIDQTIIIRDLAREIYNIKSYDINENAFSKLMIIIKDSKDE 181

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
               Y         ++  +      V     I ++   +   +  ++ E     T++L +
Sbjct: 182 FQTRYDIDKAEWKDNKWRLYGIREFVKVGRKIKENAYDILDGTGIIKLEPDYIRTVMLSS 241

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              N + L+N   +              +   R+      ++        A         
Sbjct: 242 KALNFTKLIN-WISFLKSEHLNYSDALFDLLNRVFFSFRLILLSFTVGFIALALKKNIFI 300

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             +        +       F+++      + Y         F I +  +  I +K
Sbjct: 301 LSLLNSIAFAVVYVISIVIFNFLADLGYLHIYVASSFTTVFFLIINFLVYRIVRK 355


>gi|330997503|ref|ZP_08321352.1| permease, YjgP/YjgQ family [Paraprevotella xylaniphila YIT 11841]
 gi|329570534|gb|EGG52258.1| permease, YjgP/YjgQ family [Paraprevotella xylaniphila YIT 11841]
          Length = 633

 Score = 60.0 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 72/183 (39%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++++ +     F+ +    +FI  +  + + ++ +     +L++L     Y   T++
Sbjct: 5   KKIDIFVFKAYSLLFVGTFFICLFIFLMQFMWRYVDELIGKGLTLDVLAHFFYYASLTLI 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +     ++    ELL +   G   + +++P++   ILL I  F  +NI 
Sbjct: 65  PMSLPLAILLASLITFGNLGERFELLSMKAAGIPLVRILQPIIIFNILLCIGSFYFQNIT 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +     L    +       + E +F+       I + K    N +    ++ S   
Sbjct: 125 GPEAQKKFYTLIYSMKQKSPELEIPEGIFYSEIPGYNIFVEKKGKENGMLYGVMIYSTTD 184

Query: 182 QTH 184
              
Sbjct: 185 GYE 187



 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 55/143 (38%), Gaps = 8/143 (5%)

Query: 218 ISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP--ELLETYRSEFHKR 275
              + F +   +   +    ++  A  ++              +   +   T+  E+HK+
Sbjct: 316 RQTLNFDTLYSKLTVSQQQGVLRNAMQKSTIATNEYEFRGLISKDIDQSTRTHWVEWHKK 375

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
            T  L  + F  I    A   A++R+     P+ IS++I F  ++  +    K+ ++  +
Sbjct: 376 FTLSLACLFFFFIG---APLGAIIRKGGLGVPVVISVTI-FIFYYIINVSGEKMAKSGEW 431

Query: 336 IPIL--YLFLFCISSIFLLMIKK 356
           IP    +L    +  I + +  K
Sbjct: 432 IPWFGEWLSSMVLCPIGIFLTYK 454


>gi|33242365|ref|NP_877306.1| hypothetical protein CpB1034 [Chlamydophila pneumoniae TW-183]
 gi|33236876|gb|AAP98963.1| hypothetical protein CpB1034 [Chlamydophila pneumoniae TW-183]
          Length = 357

 Score = 60.0 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 49/364 (13%), Positives = 124/364 (34%), Gaps = 14/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      ++    ++     L ++ I+ +  + + +  ++      + +L++  Y IP +
Sbjct: 1   MPILWKVLIFRYLKTAAFCTLSLICISIISSLQEIVAYIA-KDVPYDTVLRLMAYQIPYL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP + P    +   ++   ++ N  +  +  +G S+  ++ PVL ++  +    F + + 
Sbjct: 60  LPFILPGSCFVSAFSLFRKLSDNNHMTFLRASGASQSIIMFPVLMVSGAICCLNFYTCSE 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +   CR    +  A   +      L      + +++       +   +    + +    +
Sbjct: 120 LASICRYQTCKEIANMAMTSPALLL--QTLQKKENNRIFIAVDHCAKSKFDNVIVALKGN 177

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS----KDISIMKFKSYTLQTESANSS 236
            +   +   +S   D  +  +   D     K P S       S  +F   TL        
Sbjct: 178 NEISHVGIIKSIIPDTTKDTVKAKDVVFISKLPDSLTESSSPSSQRFYIETLDELLIPKI 237

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  L A    L    +  P     +  L   +  E  +R+      +      ++    +
Sbjct: 238 TSTLFAGKSYLKTRTDYLPWKQLVKQSLKHPHLPETLRRVAIGFLCITLTYAGMILGIHK 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R+        I+L   F +      I+ K  +N     +L++F   +S +       
Sbjct: 298 PRFRKS-------IALYFIFPILDLILLIVGKNTKNLPLAFMLFVFPQLVSWVVFAARAY 350

Query: 357 KYTK 360
           + ++
Sbjct: 351 RESR 354


>gi|226329628|ref|ZP_03805146.1| hypothetical protein PROPEN_03538 [Proteus penneri ATCC 35198]
 gi|225202814|gb|EEG85168.1| hypothetical protein PROPEN_03538 [Proteus penneri ATCC 35198]
          Length = 232

 Score = 60.0 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 81/214 (37%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I +S LM+   +V ++ +I+ + ++  V     +       +   I   + +
Sbjct: 5   LDRYIGRTILQSILMTLFLLVSLSGIIKFVDQLRKVGQGDFTTLDAGIYAILNILKDVQI 64

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L ++   +EL+++  +G +R+ +   V+  AI L +   +      P
Sbjct: 65  FFPMAALLGALLGLGALATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTVLIGEWGAP 124

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +     +   A+  +  +       ++ +  +         + N          + D + 
Sbjct: 125 QGEQYARNYRAEKIMGNSLVSTNRGMWAKDGNQFIHINRIKSQNEMQGITLYDFNNDRKL 184

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD 217
             + YA S + D+D++ +        R +  +K 
Sbjct: 185 ETVRYASSATYDVDKKNVDAKTSRTIRLNQSTKK 218


>gi|332880892|ref|ZP_08448562.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332681066|gb|EGJ53993.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 633

 Score = 60.0 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 72/183 (39%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++++ +     F+ +    +FI  +  + + ++ +     +L++L     Y   T++
Sbjct: 5   KKIDIFVFKAYSLLFVGTFFICLFIFMMQFMWRYVDELIGKGLTLDVLAHFFYYAGLTLI 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +     ++    ELL +   G   I +++P++   ILL I  F  +N+ 
Sbjct: 65  PMSLPLAILLASLITFGNLGERFELLSMKAAGIPLIRILQPIIIFNILLCIGSFYFQNVT 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +     L    +       + E +F+       I + K    N +    ++ S   
Sbjct: 125 GPEAQKKFYTLIYSMKQKSPELEIPEGIFYSEIPGYNIFVEKKGKENGMLYGVMIYSTTD 184

Query: 182 QTH 184
              
Sbjct: 185 GYE 187



 Score = 46.1 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 56/149 (37%), Gaps = 8/149 (5%)

Query: 212 SPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP--ELLETYR 269
                    + F +   Q   +   +I+  A  ++              +   +   T+ 
Sbjct: 310 DSTKIARQTLNFDTLYSQLTVSQQQSILRNAMQKSTVATNEYEFRGLISKDIDQSTRTHW 369

Query: 270 SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
            E+HK+ T  L  + F  I    A   A++R+     P+ IS++I F  ++  +    K+
Sbjct: 370 VEWHKKFTLSLACLFFFFIG---APLGAIIRKGGLGVPVVISVTI-FIFYYIINVSGEKM 425

Query: 330 EQNPYYIPIL--YLFLFCISSIFLLMIKK 356
            ++  ++P    +L    +  I + +  K
Sbjct: 426 AKSGEWVPWFGEWLSSMVLCPIGIFLTYK 454


>gi|297620917|ref|YP_003709054.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
           86-1044]
 gi|297376218|gb|ADI38048.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
           86-1044]
          Length = 359

 Score = 60.0 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/360 (11%), Positives = 113/360 (31%), Gaps = 9/360 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRIN-LVSSSTESLNILLKISGYLIPTV 60
           K +E Y ++   ++F         +  +I            S    + L+K         
Sbjct: 4   KIWERYFIKETLKTFFFISFCFYGLYVLIDYASHSGARHHQSMMEWSELIKFYANEWILR 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ PF   + T   L  +N + EL+ +  +G S   +++P +FL +L ++ ++ +   
Sbjct: 64  ADVLVPFALMIATIRTLCDLNIHNELVALQASGISLKKILRPFIFLGLLFTLLIYANTEF 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  + L  + ++       +  +      D    + ++              + 
Sbjct: 124 LLPNAMAASRHLRNQKEIQKNNKNKKFFVQHVGLKDGSTLLYQHYNFAERSFFDAYWVKS 183

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ---TESANSST 237
                 +   S      +   +       ++ P +    I  F+S +             
Sbjct: 184 FDEIWRFQHLSPYEQPPKGIGV----GHFQRMPDNTLHKIESFESRSFPEMKFNQKILLD 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +  + + +LS L    P++     E    + + F  +           +       +  
Sbjct: 240 TLTPSRELSLSTLWKRLPHSKEIESEKEAEFAASFFHKSALPWLCFFAVIAPAPFCVRYG 299

Query: 298 LVRQRKKIHPIFISLSIS-FGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  I+ + +   +  + +      I  +   +P     +   LF  ++++  + + 
Sbjct: 300 RSHPIFFIYSLSLFFLVGSYLILNAALIISERQVLSPEVAIGVPFMLFSSTTLYRFLYRS 359


>gi|269302797|gb|ACZ32897.1| putative permease, YjgP/YjgQ family [Chlamydophila pneumoniae
           LPCoLN]
          Length = 357

 Score = 60.0 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 49/364 (13%), Positives = 126/364 (34%), Gaps = 14/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      ++    ++     L ++ I+ +  + + +  ++      + +L++  Y IP +
Sbjct: 1   MPILWKVLIFRYLKTAAFCTLSLICISIISSLQEIVAYIA-KDVPYDTVLRLMAYQIPYL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP + P    +   ++   ++ N ++  +  +G S+  ++ PVL ++  +    F + + 
Sbjct: 60  LPFILPGSCFVSAFSLFRKLSDNNQMTFLRASGASQSIIMFPVLMVSGAICCLNFYTCSE 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +   CR    +  A   +      L      + +++       +   +    + +    +
Sbjct: 120 LASICRYQTCKEIANMAMTSPALLL--QTLQKKENNRIFIAVDHCAKSKFDNVIVALKGN 177

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS----KDISIMKFKSYTLQTESANSS 236
            +   +   +S   D  +  +   D     K P S       S  +F   TL        
Sbjct: 178 NEISHVGIIKSIIPDTTKDTVKAKDVVFISKLPDSLTESSSPSSQRFYIETLDELLIPKI 237

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  L A    L    +  P     +  L  ++  E  +R+      +      ++    +
Sbjct: 238 TSTLFAGKSYLKTRTDYLPWKQLVKQSLKHSHLPETLRRVAIGFLCITLTYAGMILGIHK 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R+        I+L   F +      I+ K  +N     +L++F   +S +       
Sbjct: 298 PRFRKS-------IALYFIFPILDLILLIVGKNTKNLPLAFMLFVFPQLVSWVVFAARAY 350

Query: 357 KYTK 360
           + ++
Sbjct: 351 RESR 354


>gi|153822424|ref|ZP_01975091.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|126520067|gb|EAZ77290.1| conserved hypothetical protein [Vibrio cholerae B33]
          Length = 164

 Score = 60.0 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 65/161 (40%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
            P+ +   + + A A        +   ++ R  +D      
Sbjct: 123 APQAQKMARDMRAFATSGGAIMSVRTGVWARDANDFIFIAK 163


>gi|269213540|ref|ZP_06158031.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
 gi|269146392|gb|EEZ72810.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
          Length = 181

 Score = 60.0 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 50/158 (31%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +I+  +  +   + +   + +     +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGKGSYNGATMAQYVLMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +    ++ +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLVLSQFGLIFAIATAALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY 158
           I P      + + + A      +               
Sbjct: 121 IAPVLSQKAENIKSTAINGKISTGNTGLWLKEKTASST 158


>gi|282860179|ref|ZP_06269254.1| putative membrane protein [Prevotella bivia JCVIHMP010]
 gi|282587068|gb|EFB92298.1| putative membrane protein [Prevotella bivia JCVIHMP010]
          Length = 633

 Score = 60.0 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 86/222 (38%), Gaps = 2/222 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  F  +    +F+  +  + + I+ +     ++++L +  GY+   ++
Sbjct: 5   KKLDIFIAKQFGMLFTGTFFISLFVLMMQFLWRSIDDLIGKGLTVDVLAQFFGYMALMLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I + G S     + ++   IL++I  F  +N +
Sbjct: 65  PQALPLAVLLSSLMTYGNLGESSELTAIKSAGISLFQSFRGLIATTILITILSFYFQNNV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN--NTLQGIFIVDSR 179
            P  +  I QL    +       + E +F+       + + K + N  +    +    + 
Sbjct: 125 APIAQKHIYQLLISMKQKSPELEIPEGVFYDGIPQTNLYVEKKDLNTGHLYNIMVYRMTD 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM 221
             +   I  A SG +    +   L     + +   +     +
Sbjct: 185 SYEDQAIILADSGMLQSTAEKKHLILNLWNGEWFENMRSQGI 226


>gi|307718798|ref|YP_003874330.1| hypothetical protein STHERM_c11120 [Spirochaeta thermophila DSM
           6192]
 gi|306532523|gb|ADN02057.1| hypothetical protein STHERM_c11120 [Spirochaeta thermophila DSM
           6192]
          Length = 424

 Score = 60.0 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 59/178 (33%), Gaps = 2/178 (1%)

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           R+    ++       +  +R+ ++      H K       S+ +    TL   + +  + 
Sbjct: 246 RNPGPREMSSVDVYRVMKEREQVLEQKRRSHEKERDDLRRSVSRLYLTTLSLSNESIRSR 305

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L +   +L  L              L+ Y  EFHK+ +     + F L++I        
Sbjct: 306 FLGSLRSSLQRLRQKERITIE--DRTLQIYTLEFHKKFSIPFSCIPFVLLAIAIGLFNLK 363

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             +            + +G+      +  +   +P     L   L  + ++ L +++K
Sbjct: 364 GGRAAGFGIGIFLSILYWGMLVAGQMLGLRTSFSPSLAMWLPNILITLVALTLFLVRK 421



 Score = 53.9 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/420 (13%), Positives = 121/420 (28%), Gaps = 65/420 (15%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   Y+   I  SF++S LF   I  + Q L     + S    L  ++ +  Y +P+++ 
Sbjct: 8   TLYRYVGEEIALSFVISFLFFFVIFLINQFLLMAEQILSKRAPLFDVILLIIYALPSIVA 67

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  PF         +T ++ + E L     G S +    P++  ++LLS   F++ +   
Sbjct: 68  ISVPFASLAAALMSITRLSSDNEFLAFQAGGISLVHAFLPMVVFSLLLSSVSFVANDYFL 127

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +L  +         LE        +   I I      + +  + I++  +  
Sbjct: 128 PLGTLNFAKLYRQILYTTPEIELESYAIKEYQN--TILIPGKVNQSHIDDLLIIEETEEG 185

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRK-----SPISKDISIMKFKSYTLQTESANSST 237
           T  +   +   +    +   L                  + S  +  +YT+  +  N + 
Sbjct: 186 TRILQAREGDIVPGRNEKTALALELHDVFLSLVKREGDYEYSSAETLTYTILVKDINIAL 245

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSE----------------------FHKR 275
                 + +   +            +   ++  E                         R
Sbjct: 246 RNPGPREMSSVDVYRVMKEREQVLEQKRRSHEKERDDLRRSVSRLYLTTLSLSNESIRSR 305

Query: 276 LTQWL------------------------------FPVIFGLISIV--AADKRALVRQRK 303
               L                              F + F  I  V  A        +  
Sbjct: 306 FLGSLRSSLQRLRQKERITIEDRTLQIYTLEFHKKFSIPFSCIPFVLLAIAIGLFNLKGG 365

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL---FCISSIFLLMIKKKYTK 360
           +     I + +S  ++WG       +     + P L ++L           L + +K  +
Sbjct: 366 RAAGFGIGIFLSI-LYWGMLVAGQMLGLRTSFSPSLAMWLPNILITLVALTLFLVRKVRR 424


>gi|282892297|ref|ZP_06300693.1| hypothetical protein pah_c221o031 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497888|gb|EFB40239.1| hypothetical protein pah_c221o031 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 359

 Score = 60.0 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/357 (10%), Positives = 102/357 (28%), Gaps = 23/357 (6%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
             V I    +    I   ++   + + ++      IP +LP+V P    + +  ++  ++
Sbjct: 2   AFVAILLTTRF-DEIAHFAALGAAGSHIIWFIVSQIPYILPIVIPISSLIASLLLIQRLS 60

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
           +  EL  +  +G +   ++ P+L  A  +++  F   + +          L  + +    
Sbjct: 61  QTHELTALRASGWAIRDILYPILIAAAFIALLNFYIVSELATNSHLQASLLKKELRSINP 120

Query: 142 FSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI------- 194
              L      R+    +  +         +                              
Sbjct: 121 LLLLNNKHLMRVKGAYFHAMGNSRVGEFAKNALFAMPSKQNNRIQLMIAKSLHADSVLFI 180

Query: 195 -----------DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
                        + ++      E   K+        + F+       + +    +L   
Sbjct: 181 GNSVTNMTTLPVENGESFDHFVVENLEKTMTPIQDFSLIFQRNVFSLSNDHLKLSLLIYR 240

Query: 244 DQNLSFLL---NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            +  +  L   N          +      +E  +R +  +    F L+        +  R
Sbjct: 241 MKEQALHLRQPNLLREEMKQLQKQQNRSYAEIIRRFSLAIAVFSFTLMGCAFGMNISRHR 300

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              K     I+L++ + + +  +  I     +   + ++   L    S F+L    +
Sbjct: 301 -SNKGVVFVIALAVFYLISYFTAKGIEHHLFSATLLYLIPHLLILGISSFILYRVSR 356


>gi|255322347|ref|ZP_05363493.1| ribonuclease PH [Campylobacter showae RM3277]
 gi|255300720|gb|EET79991.1| ribonuclease PH [Campylobacter showae RM3277]
          Length = 341

 Score = 60.0 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 106/340 (31%), Gaps = 12/340 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+      +F      +  I  ++  +Q   + S    +   L K+  +++P V
Sbjct: 1   MDRTARYLFSNFLGTFASLFATLFLIMSIVFFIQIARITSYIEITFIELFKLYMFMLPRV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +    +   ++R  E +++   G S + + K  L ++  +SIFL ++  I
Sbjct: 61  LLFTVPIAFFVSLALMFFRLSRENESIVLFTLGYSPVRIAKFFLIVSGAVSIFLIVTAII 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P          +  +     +        +  D +    ++ +  N      +     
Sbjct: 121 LIPTAAELNSNFVSYKKTVAKLNLKTTEFGQKFSDWMVFIQNEKSDENGTLYEGVTLYSP 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +    +     +  L     +L       K    +D S  K    T++  +A   ++  
Sbjct: 181 KEGAHRFVLAK-NARLTNNNAVLEFTLSEGKIYDMRDASWHKTDFGTMKISTAQEDSVAQ 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +       ++ +                 F   +   LFP+   L ++          
Sbjct: 240 TKSFVQYWQAMSEDKKRAKD-----------FATYVLIALFPLATTLFALSLGIVTYRYE 288

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
           +      IF  L   F +   FS  +       + +  + 
Sbjct: 289 KGFVYFGIFGVLFGYFTLIMLFSSRVFIAIAAIFLLFFIA 328


>gi|296272453|ref|YP_003655084.1| permease YjgP/YjgQ family protein [Arcobacter nitrofigilis DSM
           7299]
 gi|296096627|gb|ADG92577.1| permease YjgP/YjgQ family protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 356

 Score = 59.6 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 114/361 (31%), Gaps = 13/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    Y+LR   R+F++  + +      I  LQ  + V +   S N+ L    Y     
Sbjct: 1   MRIITKYLLRKFIRNFVIVLISLQIFFVGIDFLQNFDEVPN---SANLQLLYILYNSFFT 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P          +  M +  E++   + G     +  PV+ ++I+L + L   +  
Sbjct: 58  LTLTLPLSLVFGWIITIVIMVKTNEMVASFSLGVGNRQIFMPVVNVSIILIVLLIGFQMT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                         K      F+  + ++F + +D        Y      + I I    D
Sbjct: 118 PLAYSYE----YKEKILKNTYFTSSKSDIFVKYNDYFVYFKKLYPLQKYAEDIHIYKVVD 173

Query: 181 TQTHKIYYAQSGSIDLDRQAII-LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
               +   A+      +R  ++     +  +    +     +  + +    E      + 
Sbjct: 174 DDIEEGIVAKKAYFQNNRWYVLDARITKKPKVIDWNNSKIEIHHEKFLYTLEGFKPKILD 233

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE--LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                 +   +L+          +       R+  +  +   L+ V   ++        +
Sbjct: 234 SVYESTSSFSILDAITALTLLNDQEVNTSKIRASLYYEIVAPLYFVPLIILIFSYTSFNS 293

Query: 298 LVRQRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                 K     I+ ++   GVF+           NP    +  L +F    I  ++IKK
Sbjct: 294 RFFNIGKFTSFSIAATLVIWGVFFMLHKFSSGGVINPEISIL--LPIFLWYIITYILIKK 351

Query: 357 K 357
           +
Sbjct: 352 Q 352


>gi|294674577|ref|YP_003575193.1| hypothetical protein PRU_1912 [Prevotella ruminicola 23]
 gi|294473775|gb|ADE83164.1| putative membrane protein [Prevotella ruminicola 23]
          Length = 662

 Score = 59.6 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 82/222 (36%), Gaps = 2/222 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  F+ +     F+  +  + + ++ +     SL ++ +   Y+   ++
Sbjct: 5   KKLDIFIAKQFGLLFVGTFFICQFVLMMQFLWRYVDELIGKGLSLEVMAQFFWYMGLMLM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I   G S +   + ++ +++L++   F  +N++
Sbjct: 65  PQAFPLAILLSSLIAFGNLGESSELTAIKAAGISLMQAFRSLIIISVLMAGISFYFQNVV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY--NPNNTLQGIFIVDSR 179
            P+      +L    +       + E +F+       I + K   N       +    + 
Sbjct: 125 GPRANQDFYRLLLGMKQKSPELEIPEGVFYDGIPGSNIYVQKKDLNTGMLYGIMIYRMTG 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM 221
             +   I  A SG +    +   L     +     +     +
Sbjct: 185 SYEDQAIILADSGMMQSTAEKKHLLLTLYNGVWNENMRSQDL 226


>gi|288929933|ref|ZP_06423775.1| putative permease [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328752|gb|EFC67341.1| putative permease [Prevotella sp. oral taxon 317 str. F0108]
          Length = 630

 Score = 59.6 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 79/204 (38%), Gaps = 2/204 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  FL +    +F+  +  + + ++ +     ++ +L +   ++   ++
Sbjct: 5   KKLDIFICKQFGMLFLGTFFICLFVLMMQFLWRYVDELVGKGLTIEVLAQFFWWMGLMMV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I + G S       ++ ++  +S   F+ +N I
Sbjct: 65  PQALPLAILLSSLITFGNLGESSELTAIKSAGISLTRTFSSLVVVSCFISATSFVFQNNI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN--NTLQGIFIVDSR 179
            P     + QL    +       + E +F+    +  I + K +         +    S 
Sbjct: 125 GPYSTIKLSQLLVSMKQKNPELEIPEGVFYDGIPNSNIYVQKKDVKTGKFYGIMIYRMSN 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIIL 203
             +  +I  A SG +    +   L
Sbjct: 185 SYEDSEIILADSGMLQTTAEKQHL 208



 Score = 42.3 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
             ++  ++ E +K+    L  +IF  I    A    ++R+     P+ +S+ +    +  
Sbjct: 363 NRMIRQHKIEMYKKFVLSLSCLIFFFIG---APLGTIIRKGGLGIPVIVSVLVFIVYYIL 419

Query: 322 FSYIIHKIEQNPYYIP---ILYLFLFCISSIFL 351
            +       +  + I    +L   +    ++F+
Sbjct: 420 DNSGYQMARRGIWAIWFGELLATMVLVPLAVFV 452


>gi|237752929|ref|ZP_04583409.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375196|gb|EEO25287.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 344

 Score = 59.6 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 131/356 (36%), Gaps = 13/356 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + ++ +   + F    L + FIA V+  ++   +      S   LL +  Y +PT+L 
Sbjct: 2   RIKNFLFQSFAQVFFPIFLVLFFIASVVIFIRIAGVTFVVKISFLELLTLYFYTLPTMLF 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P  F +     L+ ++ + EL ++   G +   ++K    +A+L S+ LF+   I+ 
Sbjct: 62  FVIPLSFFVACVLGLSRLSFDYELPVLFALGMNPKKIVKIFFPIALLASVSLFVLSLILT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q   + + ++  +        +L + L       N       +  + ++ +Q
Sbjct: 122 PLSDIAYRQFLEERKSSIDVNLQAGEFGQKLGEWLVYVQKGKNSTYENIVLLSLQAKGSQ 181

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
              + +A+  +I      +  +  +      +S  +  + F    L++    +    +  
Sbjct: 182 KDGLVFAKQANIGNVDGVMEAHLSDGKIYRKVSDGVERISFDEMILRSAVDFTGDGSVGL 241

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
            +         +  +   R              L+ ++   +F LIS+       +   R
Sbjct: 242 VEYWNRAFYENSRQDKTKRN-------------LSMYVLLSLFPLISLFYFPFLGVKNPR 288

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            + +   +   +  GVF+   YI+         + +  ++ +   +++   + + Y
Sbjct: 289 YQKNYTILQAMVVVGVFFALMYIVATYLPLAGMVLLPCIWGYIGYALYKHYVARFY 344


>gi|153824249|ref|ZP_01976916.1| permease YjgP/YjgQ family protein [Vibrio cholerae B33]
 gi|126518229|gb|EAZ75454.1| permease YjgP/YjgQ family protein [Vibrio cholerae B33]
          Length = 155

 Score = 59.6 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 41/132 (31%), Gaps = 1/132 (0%)

Query: 225 SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
            +         + + +K  + +L+ L +   +      +    Y     +++TQ +   +
Sbjct: 24  RWRTSLAPDKLAVVTVKPEELSLTGL-SDYVHYLKASEQDSSRYELALWRKVTQPISIAV 82

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
             L+++                   +    SF +   F   +  +   P     L   L 
Sbjct: 83  MMLMALSFIFGPLRSVTMGARILSGVIAGFSFYISSEFFGPLSLVYGLPPLFGALAPSLV 142

Query: 345 CISSIFLLMIKK 356
            ++    L+ +K
Sbjct: 143 FLAIALGLLGRK 154


>gi|325300373|ref|YP_004260290.1| permease YjgP/YjgQ family protein [Bacteroides salanitronis DSM
           18170]
 gi|324319926|gb|ADY37817.1| permease YjgP/YjgQ family protein [Bacteroides salanitronis DSM
           18170]
          Length = 636

 Score = 59.6 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 78/205 (38%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++IL+     F  +    +FI  +  + + ++ +      +NIL +   Y   T++
Sbjct: 5   KKLDIFILKSFLLLFAGTFFICLFIFMMQFLWRYVDELVGKGLEINILAQFFFYSGLTLI 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    +       +     ELL +   G   + ++ PV+     L +  FI +N I
Sbjct: 65  PISLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIMCPVILFCAFLGLMSFIFQNEI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  +  L    +       + E +F+   D   I +   +    +    ++ +   
Sbjct: 125 GPRAQKKLWTLLVSMKQKSPEVDIPEGVFYSEIDGYNIYVKHKDRETGMLKDVLIYNFSD 184

Query: 182 Q--THKIYYAQSGSIDLDRQAIILN 204
                 I +A+ G +++      L 
Sbjct: 185 GFENAHIIWAEEGKLEMTADKKHLY 209



 Score = 37.3 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 2/137 (1%)

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP--ELLETYRSEFHK 274
           +++ +   S      S   S+ + K  ++  S L      +   +     + ++RS++HK
Sbjct: 315 NVAYINTDSIFNSMTSQEKSSTLSKTENRVSSLLSECEMKSFLTKDTDRNILSHRSDWHK 374

Query: 275 RLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           ++T  L  +IF  I                +    +   I + +  G + +    E N  
Sbjct: 375 KITLSLACLIFFFIGAPLGAIIRKGGLGMPVVISVVIFVIYYIIDSGATRVGKSGEMNVA 434

Query: 335 YIPILYLFLFCISSIFL 351
               +   +      F 
Sbjct: 435 LGTWMSTLVLAPLGAFF 451


>gi|327314112|ref|YP_004329549.1| permease [Prevotella denticola F0289]
 gi|326944181|gb|AEA20066.1| permease, YjgP/YjgQ family [Prevotella denticola F0289]
          Length = 645

 Score = 59.6 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 86/222 (38%), Gaps = 2/222 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  +++I R  G  F  +    +F+  +  + + ++ +     S+++L +   Y+   ++
Sbjct: 6   RKLDIFIARQFGMLFAGTFFISLFVLMMQFLWRYVDDLIGKGLSMDVLGQFFWYMSLMMV 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I + G S +   + ++ +++L++   F  +N +
Sbjct: 66  PQALPLAILLSSLISYGNLGESSELTAIKSAGISLVQSFRGLIVISVLIACGSFYFQNNV 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN--PNNTLQGIFIVDSR 179
            P  +  I QL    +       + E +F+    +  + + K +    +    +    + 
Sbjct: 126 GPSAQKHIAQLLISMKQKSPELEIPEGIFYDGIPNTNLYVEKKDLKTGHLYNIMVYRMTD 185

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM 221
             +   I  A SG +    +   L       +   +     M
Sbjct: 186 SYEDQAIILADSGMLQSTAEKKHLVLNLWSGEWFENMRSQEM 227


>gi|281423648|ref|ZP_06254561.1| putative permease [Prevotella oris F0302]
 gi|281402200|gb|EFB33031.1| putative permease [Prevotella oris F0302]
          Length = 637

 Score = 59.6 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 79/209 (37%), Gaps = 2/209 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  F+ +     F+  +  + + I+ +     S+ I+ K   Y+   ++
Sbjct: 10  KKLDIFIAKQFGMLFVGTFFICQFVLMMQFLWRYIDDLIGKGLSMEIMAKFFWYMGLMLV 69

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I   G S +   + ++ + + +S   F+ +N I
Sbjct: 70  PQALPLAILLSSLIAFGNLGESSELTAIKAAGISLMQAFRSLIVITLFVSGVSFVFQNNI 129

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN--PNNTLQGIFIVDSR 179
            P+  + I QL    +       + E +F+    +  + +   +         +    + 
Sbjct: 130 GPEANNKIAQLLMSMKQKSPELEIPEGIFYDGIPNSNLYVQHKDLKTGKLYGIMIYRMTG 189

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV 208
             +   I  A SG +    +   L     
Sbjct: 190 SYEDQAIILADSGMLQSTAEKKHLVLSLW 218


>gi|160887737|ref|ZP_02068740.1| hypothetical protein BACUNI_00139 [Bacteroides uniformis ATCC 8492]
 gi|317478670|ref|ZP_07937825.1| hypothetical protein HMPREF1007_00941 [Bacteroides sp. 4_1_36]
 gi|156862768|gb|EDO56199.1| hypothetical protein BACUNI_00139 [Bacteroides uniformis ATCC 8492]
 gi|316905181|gb|EFV26980.1| hypothetical protein HMPREF1007_00941 [Bacteroides sp. 4_1_36]
          Length = 633

 Score = 59.6 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 80/205 (39%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++++L+     F+ +    +FI  +  + + ++ +      + +L +   Y   +++
Sbjct: 5   KKLDIFVLKSFCMLFMGTFFICLFIFMMQFLWRYVDEMVGKGLEMTVLAQFFFYSALSLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    +       +     ELL +   G S + +++P++     +    F  +N+I
Sbjct: 65  PASLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIIFICFICCVSFYFQNVI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK ++ +  L    +       + E +F+   D   + +   N    +    ++ + + 
Sbjct: 125 GPKAQTKLWTLLISMKQKSPEVDIPEGVFYDEIDGYNLYVKHKNRKTGMLYDVLIYNFEK 184

Query: 182 Q--THKIYYAQSGSIDLDRQAIILN 204
                +I  + SG +++      L 
Sbjct: 185 GFENAQIIKSDSGRLEMTADKQHLY 209


>gi|281422565|ref|ZP_06253564.1| putative permease [Prevotella copri DSM 18205]
 gi|281403389|gb|EFB34069.1| putative permease [Prevotella copri DSM 18205]
          Length = 632

 Score = 59.6 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 71/183 (38%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  F+ +     F+  +  + + I+ +     +++++ +   Y+   ++
Sbjct: 5   KKLDIFIAKQFGLLFMGTFFICQFVLMMQFLWRYIDELIGKGLTMDVMAQFFWYMGLMLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I   G S +   + ++ + I++    F  +N +
Sbjct: 65  PQALPLAILLSSLMTFGNLGESSELTAIKAAGISLMQAFRSLIVITIIIMFGSFYFQNNV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK    + QL    +       + E +F+    +  + + K +         ++     
Sbjct: 125 GPKSNMKLAQLLISMKQKSPELEIPEGIFYDGIPNCNLYVQKKDLKTGKLYGIMIYRMTD 184

Query: 182 QTH 184
              
Sbjct: 185 SYE 187



 Score = 37.3 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 50/180 (27%), Gaps = 6/180 (3%)

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS----KDISIMKFKSYTLQTESA 233
           + D  +    Y   G I L+   +    G        S    K    + F +   +    
Sbjct: 273 NHDIDSLNQLYDSIGRIYLNEANVRFYGGAQRINKKDSLKEIKKGEKLIFDTLYNKLPQD 332

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRP--ELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                V +A       L + +  + +      ++  ++ E   + T  L  +IF  I   
Sbjct: 333 KKLMAVNQAQSTVQQELSDLDFKSMSTSDADYMIRQHKIEAINKFTLALSCLIFFFIGAP 392

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                        +    +   + F +      +        ++   L   +    +IF+
Sbjct: 393 LGAIIRKGGLGFPVVISVLVFIVFFILDNTGYRMSRSGMWAIWFGKGLAPAVLTPLAIFV 452


>gi|299141277|ref|ZP_07034414.1| permease [Prevotella oris C735]
 gi|298577237|gb|EFI49106.1| permease [Prevotella oris C735]
          Length = 632

 Score = 59.2 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 79/209 (37%), Gaps = 2/209 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  F+ +     F+  +  + + I+ +     S+ I+ K   Y+   ++
Sbjct: 5   KKLDIFIAKQFGMLFVGTFFICQFVLMMQFLWRYIDDLIGKGLSMEIMAKFFWYMGLMLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I   G S +   + ++ + + +S   F+ +N I
Sbjct: 65  PQALPLAILLSSLIAFGNLGESSELTAIKAAGISLMQAFRSLIVITLFVSGVSFVFQNNI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN--PNNTLQGIFIVDSR 179
            P+  + I QL    +       + E +F+    +  + +   +         +    + 
Sbjct: 125 GPEANNKIAQLLMSMKQKSPELEIPEGIFYDGIPNSNLYVQHKDLKTGKLYGIMIYRMTG 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV 208
             +   I  A SG +    +   L     
Sbjct: 185 SYEDQAIILADSGMLQSTAEKKHLMLSLW 213


>gi|109947019|ref|YP_664247.1| hypothetical protein Hac_0413 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714240|emb|CAJ99248.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 356

 Score = 59.2 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 119/353 (33%), Gaps = 11/353 (3%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + 
Sbjct: 15  RYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFIL 74

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P  F       L+ ++ + ELL+  + G S   + K  + L+IL+S  L +   ++ P  
Sbjct: 75  PITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSILVSAILLVFSLVLIPTS 134

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHK 185
           +S       + +  +  +        +L D L         NN+   + +  ++      
Sbjct: 135 KSAYYGFLHQKKDKIDINIRVGEFGQKLGDWLVYV--DKAENNSYDNLVLFSNKSLSQES 192

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ 245
              AQ G+I+       LN  + H        +  + F+   L+ +  + +         
Sbjct: 193 FILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKIDFEELHLRNKLKSFNANDASYLQG 252

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
                        +        +       +   LFP+    +  +        +     
Sbjct: 253 TDYLGYWKRAFGKSANKSQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSY 308

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +  ++ I F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 309 FYVLGAVGIYFLMVHVISTDLFLMT-----FIFPFIWAFASYLLFRKFILKRY 356


>gi|296532232|ref|ZP_06894979.1| permease YjgP/YjgQ family protein [Roseomonas cervicalis ATCC
           49957]
 gi|296267439|gb|EFH13317.1| permease YjgP/YjgQ family protein [Roseomonas cervicalis ATCC
           49957]
          Length = 369

 Score = 59.2 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/354 (9%), Positives = 92/354 (25%), Gaps = 12/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   YI R      L     +  +  +   ++ +   ++       ++  I+   +P V+
Sbjct: 6   TLSAYIARRFAGMALAMVAALAALVALFDFIELLRRAATRADAGFALVASIAALRLPYVV 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIK-PVLFLAILLSIFLFISENI 120
             + PF   +        ++R +EL++    G S  + +  PVL    + ++ + +   +
Sbjct: 66  LQILPFAVLLGGIVAFWRLSRASELVVARAAGVSAWSFLLGPVLVALAMGTLAITVVSPL 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    +  +   + A   S L     +    D  ++         +  +       
Sbjct: 126 SAAMMARAERLDATYLRNATGLSSLAGGKLWLRQADESVEPGGVAILAGVPEVGRDGFLL 185

Query: 181 TQTHKIYY--AQSGSIDLDRQAIILNDGEVHRKS----PISKDISIMKFKSYTLQTESAN 234
                  +          +     L  G    +        +                  
Sbjct: 186 RGASLWRFSATDRPIGRAEAPLARLEPGAWVLQEAVSFGRDRQPLPAATLRLPTSLTPDR 245

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                   +  +   L                 +R  FH      L  +   +  + A  
Sbjct: 246 IEETFASPDTLSFWAL-PGFIAVLESAGFSAVRHRLTFHS--LLSLPLLAAAMALLAAGF 302

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
                R+      + + ++  F +F     +  +  Q       L  +   ++ 
Sbjct: 303 SMRHARRGGVGRMLGLGIAAGFALFL-LDKVAEEFGQAGTLPVALAAWAPSVAG 355


>gi|296120596|ref|YP_003628374.1| permease YjgP/YjgQ family protein [Planctomyces limnophilus DSM
           3776]
 gi|296012936|gb|ADG66175.1| permease YjgP/YjgQ family protein [Planctomyces limnophilus DSM
           3776]
          Length = 373

 Score = 59.2 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 118/367 (32%), Gaps = 18/367 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES------LNILLKISG 54
           M +F+ Y+L+     F +  +    +   I +L+ ++    + +S      L  +    G
Sbjct: 1   MWTFDQYLLKNFFYVFFVCFVAAFGLVVTIDLLENLDEFMLNNQSGGALSLLVSIGTYYG 60

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
           Y     L         +    VL    R+ EL  +   G     +++ ++   +L++  L
Sbjct: 61  YQAIFFLDRGGASLMVIAVMVVLVLFQRSGELHPMLAAGVPMYRVLRALMIGPVLVTAVL 120

Query: 115 FISENIIEPKCRSTIKQLSAKA-----QLALTFSYLEENLFFRLDDDLYIKISKYNPNNT 169
             ++ ++ P                  Q+   + Y  +         L     +      
Sbjct: 121 VANQELVVPVIAHAAHGGRGIQTGEGGQVEPIYDYSTKISINGEKVSLADSQLEGAQFVL 180

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHR--KSPISKDISIMKFKSYT 227
              + + D    +     + ++     D   I     +      +P  ++I     +S  
Sbjct: 181 PAPLIVHDLTIIRGTTAIFRKAAGQRPDGWVIFGAAPQFEELALTPRGQEIVRKVGRSGE 240

Query: 228 LQTESA----NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
           L   S             +N  + S LL     N  Y P  ++ + ++ H RLTQ L  +
Sbjct: 241 LFIASPVSCDQLFKRKSSSNYLSTSELL-GRIRNEAYGPLAVQKFVTQVHGRLTQPLINL 299

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           I  L+S+    +R             ++  I FG+    +Y+               +F+
Sbjct: 300 IAVLLSLPLLVRRESAGLVMDSGVCAVAQGILFGMMQLSAYLSTSGIIAADLAAWFPVFI 359

Query: 344 FCISSIF 350
               + +
Sbjct: 360 GGAMAAW 366


>gi|197105522|ref|YP_002130899.1| hypothetical protein PHZ_c2059 [Phenylobacterium zucineum HLK1]
 gi|196478942|gb|ACG78470.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 386

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 109/329 (33%), Gaps = 12/329 (3%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
           S S+E    + +++  L+P  + +  P  F +    V+  MN+ +E+  +   G S   L
Sbjct: 30  SESSERFTFVAQLAVNLVPHYVGLTLPAAFFIALIIVVNRMNQASEIDALLAAGVSLTRL 89

Query: 100 IKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
             P L LA +LS    I    ++P  R   + +   AQ A     + E      +DDL +
Sbjct: 90  AAPYLVLAGVLSFLTLIVFGALQPYSRYAYRAVLHAAQNAGWSGQVPEGTIIAPNDDLIM 149

Query: 160 KISKYNPNNTL-QGIFIVDSRDTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPI 214
              + +        +FI         ++  A    +          ++L DG+  R +  
Sbjct: 150 TTDQADAAGQRLTRVFIRRLTPEGREEVTTAGVAELRRTADGKNVTLMLKDGQQLRFNR- 208

Query: 215 SKDISIMKFKSYTLQTESANS----STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRS 270
             +  ++ F+ +T+Q   +              + NL  L      N        ET  +
Sbjct: 209 RGEPELLSFEDFTMQLPLSGPARLLRARGGDERELNLFEL--AKKANDPQSVIPRETLLA 266

Query: 271 EFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE 330
           E + RL + L   +  L+++          +   +    I L     +            
Sbjct: 267 ELYGRLARALALPLLPLLAVPLGLSAKRSGRAPGVIVGGILLLAFHHLIQLGQSFAETGR 326

Query: 331 QNPYYIPILYLFLFCISSIFLLMIKKKYT 359
                   +    F      + +  +K  
Sbjct: 327 APAEAGVGIPFVAFAAICFTVFLTSRKRP 355


>gi|315185937|gb|EFU19701.1| permease YjgP/YjgQ family protein [Spirochaeta thermophila DSM
           6578]
          Length = 424

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 56/177 (31%), Gaps = 2/177 (1%)

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           R+    ++       +  +R+ ++      H K       S+      TL   + +  + 
Sbjct: 246 RNPGPREMSSVDVYRVMKEREQVLEQKRRSHEKERDDLRRSVSSLYLTTLSLSNESIRSR 305

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L     +L  L              L+ Y  EFHK+ +     + F L++I        
Sbjct: 306 FLGNLRSSLQRL--REKERIRIEDRTLQIYTLEFHKKFSIPFSCIPFVLLAIAIGLFNLK 363

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
             +            + +G+      +  +   +P     +   +  + ++ L +I+
Sbjct: 364 GGRAAGFGIGIFLSIVYWGMLVAGQMLGLRTSFSPSLAMWVPNIIISLVALTLFLIR 420



 Score = 51.9 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 90/274 (32%), Gaps = 7/274 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   Y+   I  SF++S LF   I  + Q L     + S    L  ++ +  Y +P+++ 
Sbjct: 8   TLYRYVGEEIALSFVISFLFFFVIFLINQFLLLAEQILSKRAPLFDVILLIIYALPSIVA 67

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  PF         +T ++ + E L     G S +    P++   +LLS   F++ +   
Sbjct: 68  ISVPFASLAAALMSITRLSSDNEFLAFQAGGISLLHAFLPMVVFGLLLSSVSFVANDYFL 127

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +L  +         LE        +   I I      + +  + I++  +  
Sbjct: 128 PLGTLNFAKLYRQILYTTPEIELESYAIKEYQN--TILIPGKVNQSHIDDLLIIEETEEG 185

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRK-----SPISKDISIMKFKSYTLQTESANSST 237
           T  +   +   +    +   L                  + S  +  +YT+  +  N + 
Sbjct: 186 TRILQAREGDIVPGRNEKTALALELHDVFLSLVKREGDYEYSSAETLTYTILVKDINIAL 245

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSE 271
                 + +   +            +   ++  E
Sbjct: 246 RNPGPREMSSVDVYRVMKEREQVLEQKRRSHEKE 279


>gi|257465009|ref|ZP_05629380.1| hypothetical protein AM202_00770 [Actinobacillus minor 202]
 gi|257450669|gb|EEV24712.1| hypothetical protein AM202_00770 [Actinobacillus minor 202]
          Length = 309

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 92/297 (30%), Gaps = 15/297 (5%)

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +  ++ P    +     L      +E+ ++   G  +  L K  LFL+I  +     +  
Sbjct: 1   MAQLMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLAKVALFLSIFTTALAVYNVF 60

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL--YIKISKYNPNNTLQGIFIVD 177
            + P   +   +L A+A+    FS L    F      +     I+          +F  D
Sbjct: 61  WLTPWSINKQSELLAEAKANPRFSALSAGQFMTAGGYVLFIDNINYDQNKLNDIYVFQPD 120

Query: 178 SRDTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
            +      +  A SG +       Q + L +   +  +    D  I  F++YT      +
Sbjct: 121 QQKKNRPSVIVADSGELKGLPNGDQILTLENSTRYEGTAKVADFRISHFENYTAYLGHQD 180

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
             +             L    +      +     ++E   R        +  L+++  + 
Sbjct: 181 VDSD----------EKLVQRADWAKLVADKSPEAQAELQWRFALIFATPLMALLAVPMSS 230

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                 +  K+ P  +   I F +           + +P  +  +    F I  I +
Sbjct: 231 VNPRQGRFAKLLPALLLYLIYFLLQSTLKSSGASGKLDPTILMPVVSVAFLILGIVM 287


>gi|153827723|ref|ZP_01980390.1| inner membrane protein YjgP [Vibrio cholerae MZO-2]
 gi|149737800|gb|EDM52705.1| inner membrane protein YjgP [Vibrio cholerae MZO-2]
          Length = 199

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 65/181 (35%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +     L  +     +   L++  F R  D   +       N  L  +F+       
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 183 T 183
           +
Sbjct: 182 S 182


>gi|268678855|ref|YP_003303286.1| permease YjgP/YjgQ family protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268616886|gb|ACZ11251.1| permease YjgP/YjgQ family protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 353

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/359 (11%), Positives = 112/359 (31%), Gaps = 9/359 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK FE YI++   ++FL+  + +      + +L     +     S N+ +  + +   + 
Sbjct: 1   MKLFETYIIKNYLKNFLVIFIGLDLFYVGVDLLTNYKNIPD---SANLQILYALFQAMSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P            +M +  EL+ +  +  ++  L++P+  +A++LS+        
Sbjct: 58  INYVLPLSIVFAMIVTYFAMLKTNELICMYASSITKKALVRPLFGVALVLSLLHIGLNYT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                      L    +++ +   L      +      +   K    +            
Sbjct: 118 EFAYAYEYGSNLKKYNRISNSSEDLFIKHDQQYVYFKKLDPLKQVAYDVTIFDVESADVK 177

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                   +    +   ++  I +   +         I   +        +      +  
Sbjct: 178 RIIRAKMASFVKDVWWLKEVEITHKPSITSLDDKGFWIEKQETLQAMKNFKPKIMDNVYQ 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                ++   ++        +       +S       Q  FP     +S++      L+ 
Sbjct: 238 SDFSLSIRDGIDALRF-FETQGVNTSKIKSTL---FYQLFFPFFAPFLSVILFYNAPLMG 293

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP--ILYLFLFCISSIFLLMIKKK 357
           +      +  S +    + W   +++ ++  N   IP   ++L +  ++ I L    K+
Sbjct: 294 RYFNTALVASSFAFVTLLVWSSLFLLSRLAINSVLIPEIAIFLPIVMLAFIALYFYVKR 352


>gi|269963274|ref|ZP_06177606.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831989|gb|EEZ86116.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 235

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/162 (9%), Positives = 51/162 (31%), Gaps = 14/162 (8%)

Query: 193 SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLN 252
            +   RQ I +++G  +   P   +  + KF  Y                     + L+ 
Sbjct: 66  ELSDGRQIITMHEGTRYEGVPTRVEYMVTKFDQYEGVIGQREVKQKGRDWEAYPTADLI- 124

Query: 253 PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISL 312
                           ++E   R++     +   L++++     A+  ++ +   +  ++
Sbjct: 125 ---------GHPDPEAQAELQWRISL-FVCI--PLLTMLVIPLSAVNPRQGRFAKMGPAI 172

Query: 313 SISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            I    F   S     + ++      + ++      + + ++
Sbjct: 173 LIYLAYFLAISATKSAL-EDGAIPATIGMWPINAMLLIVAIL 213


>gi|51599060|ref|YP_073248.1| hypothetical protein BG0834 [Borrelia garinii PBi]
 gi|51573631|gb|AAU07656.1| hypothetical protein BG0834 [Borrelia garinii PBi]
          Length = 355

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 110/355 (30%), Gaps = 1/355 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             ++  ++ I  +FL   L  + +  +  +   +            +L I    +P    
Sbjct: 2   KIDMLFVKSIILTFLSMNLLFMILIILGDLFVNLLSYLEKNIGFKDILYIYYLYLPKAFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N++ +++   E++ + + G S   +++P++ +++ +S  LF  +N + 
Sbjct: 62  DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVSLTRILRPIILISLFISFVLFFFDNYLV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
               +    L   +      S     +     +   IK    N N     + I+     +
Sbjct: 122 IDTVARRDLLIKNSIGNSRSSDKTIIIRDLAREIYNIKSYDINENAFSNLMIIIKDSKDE 181

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
               Y         ++  +      V     I ++   +   +  ++ E     T++L +
Sbjct: 182 FQTRYDIDKAEWKDNKWRLYGIREFVKVGRKIKENAYDILDGTGIIKLEPDYIRTVMLSS 241

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              N + L+N   +              +   R+      ++        A         
Sbjct: 242 KALNFTKLIN-WISFLKSEHLNYSDALFDLLNRVFFSFRLILLSFTVGFIALALKKNIFI 300

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             +        +       F+++      + Y         F I + F+  I +K
Sbjct: 301 LSLLNSIAFAVVYVISIVIFNFLADLGYLHIYVASSFTTIFFLIINFFVYRIVRK 355


>gi|157165310|ref|YP_001466458.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter concisus
           13826]
 gi|112801662|gb|EAT99006.1| permease YjgP/YjgQ [Campylobacter concisus 13826]
          Length = 354

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 107/364 (29%), Gaps = 14/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK +  Y+     +SFL+  L +      I +L  +  +     S N+ L   G    + 
Sbjct: 1   MKLYARYVGWVYIKSFLIVFLALELFYVGIDLLTNLKDL---PPSANLQLLYVGLTALSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P         +  +M R+ EL+     G S+  LI P   +A  ++IF       
Sbjct: 58  ISYVLPLSLIFALIILHVNMVRSNELISFYALGISKNKLILPPFLIAFFVTIFYVGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                                FS    + F + +          +       + I D   
Sbjct: 118 PFAYA----HDYQKSIAKNTAFSKSTNDSFLKFEGKFIYIKELNSAKQRANDVRIFDING 173

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           T      +A       +   +   +     ++    +    K KS  L          + 
Sbjct: 174 TDLLSTTFADHAKFKDNEWVLEDVNQTFLPQNLELGENGFSKVKSENLDALRGFKPKSIE 233

Query: 241 KANDQNLSFLLNPNPNNPNYRPEL----LETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            A     S    P+  N     +     L++ R+ F+       F     LI        
Sbjct: 234 SAASVENSKFNIPDAINFIKTFKNEGIGLDSARTAFYNLAITPFFAPFLLLI---FYYHL 290

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            +  +   +        +   V WG  +I+ K  Q    +P + + +  I      +   
Sbjct: 291 PVTGRFFNLALSTFIFVVITLVVWGLLFILTKFAQTSVILPEIGMVVPVILLFAYAIYLI 350

Query: 357 KYTK 360
           K  +
Sbjct: 351 KSHR 354


>gi|170729351|ref|YP_001774784.1| hypothetical protein Xfasm12_0115 [Xylella fastidiosa M12]
 gi|167964144|gb|ACA11154.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 361

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 93/256 (36%), Gaps = 5/256 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SF+ + + ++ +     ++  +  ++       +LL   G    + 
Sbjct: 1   MPKLDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIADGHFPAKLLLSQLGLRFISY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I + G     ++  +L L + + + + +    
Sbjct: 61  LPLLLPLALMLGLLLSLGRLYRDSEMAVITSIGVGPGRMLPSILGLVLPVVVLIGVCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T   L  +A  ++  + LE   F  + D   + +S  + + T      + S+ 
Sbjct: 121 LAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVYLSSLSSDGTKLNAVFMQSQK 180

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESANS 235
                +  A+ G +       + + L DG+           +  ++ F          + 
Sbjct: 181 DDRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPADGAALNYRVLTFARNDALLPELSV 240

Query: 236 STIVLKANDQNLSFLL 251
                  +      L+
Sbjct: 241 VYDSNHPDILPTFNLI 256


>gi|254882243|ref|ZP_05254953.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319643195|ref|ZP_07997823.1| hypothetical protein HMPREF9011_03424 [Bacteroides sp. 3_1_40A]
 gi|254835036|gb|EET15345.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317385099|gb|EFV66050.1| hypothetical protein HMPREF9011_03424 [Bacteroides sp. 3_1_40A]
          Length = 632

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 79/215 (36%), Gaps = 6/215 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++IL+     F+ +    +FI  +  + + ++ +      +++L +   Y   T++
Sbjct: 5   KKLDIFILKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVLAQFFFYSALTLI 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    +       +     ELL +   G   + +I+P++     L    F  +N+I
Sbjct: 65  PLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPLIIFCTFLCCTSFYFQNVI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK +  +  L    +       + E +F+   +   I + + +    +    ++ +   
Sbjct: 125 APKAQIKLLTLLVSMKQTSPELDIPEGVFYDEIEGYNIYVKQKDRETGMLKDVLIYNFSD 184

Query: 182 QTHKIYYAQ------SGSIDLDRQAIILNDGEVHR 210
                +           + D     + L +GE   
Sbjct: 185 GFENAHIIWASEGKMEMTADKQHLYLHLYNGEQFE 219



 Score = 42.7 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
             +  + +++HK++T  L  +IF  I    A   A++R+     P+ +S+ I    +   
Sbjct: 362 NNIRKHEADWHKKITLSLSCLIFFFIG---APLGAIIRKGGLGMPVVVSVLIFVIYYIID 418

Query: 323 SYIIHKIEQN-PYYIPILYLFLFCISSIFLLMIKK 356
           S      +      +  +++    ++ I      K
Sbjct: 419 SGATRVAKSGEMNMVLGVWMSTIVLAPIGAFFTYK 453


>gi|150002748|ref|YP_001297492.1| hypothetical protein BVU_0142 [Bacteroides vulgatus ATCC 8482]
 gi|149931172|gb|ABR37870.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
          Length = 632

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 79/215 (36%), Gaps = 6/215 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++IL+     F+ +    +FI  +  + + ++ +      +++L +   Y   T++
Sbjct: 5   KKLDIFILKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVLAQFFFYSALTLI 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    +       +     ELL +   G   + +I+P++     L    F  +N+I
Sbjct: 65  PLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPLIIFCTFLCCTSFYFQNVI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK +  +  L    +       + E +F+   +   I + + +    +    ++ +   
Sbjct: 125 APKAQIKLLTLLVSMKQTSPELDIPEGVFYDEIEGYNIYVKQKDRETGMLKDVLIYNFSD 184

Query: 182 QTHKIYYAQ------SGSIDLDRQAIILNDGEVHR 210
                +           + D     + L +GE   
Sbjct: 185 GFENAHIIWASEGKMEMTADKQHLYLHLYNGEQFE 219



 Score = 42.7 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
             +  + +++HK++T  L  +IF  I    A   A++R+     P+ +S+ I    +   
Sbjct: 362 NNIRKHEADWHKKITLSLSCLIFFFIG---APLGAIIRKGGLGMPVVVSVLIFVIYYIID 418

Query: 323 SYIIHKIEQN-PYYIPILYLFLFCISSIFLLMIKK 356
           S      +      +  +++    ++ I      K
Sbjct: 419 SGATRVAKSGEMNMVLGVWMSTIVLAPIGAFFTYK 453


>gi|189501480|ref|YP_001957197.1| permease YjgP/YjgQ family protein [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|189496921|gb|ACE05468.1| permease YjgP/YjgQ family protein [Candidatus Amoebophilus
           asiaticus 5a2]
          Length = 527

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 72/187 (38%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +  +L    + F++     VFI  +   L   + +        + +++  Y      
Sbjct: 5   KRTDKIVLTPFIKLFILVLSVTVFIMLMQFFLIYFDELIGKDLGFWVYVQLFCYFGINAT 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +  V  S+    EL  + + G   I +++P+LFL  LLSIF++ S   I
Sbjct: 65  PMAFPLATLVSSLMVFGSLGEQLELTALKSAGIPFIRILRPLLFLVTLLSIFVYFSNGYI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK       L    +       ++E +F+    D  I++ +  P+       ++     
Sbjct: 125 VPKVTVKAHTLLYDLRKKKPSIAIKEGVFYNGIPDYSIRVERKLPDQKTLEDIVIYDHTK 184

Query: 182 QTHKIYY 188
               ++ 
Sbjct: 185 NKGNVHM 191



 Score = 43.4 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 44/128 (34%), Gaps = 6/128 (4%)

Query: 231 ESANSSTIVLKANDQ--NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
            +   S I+ KA +Q   L + + P  N        L+ ++ E +KR +  +  ++  LI
Sbjct: 373 NNPKRSQIIQKALEQVKELRYKIQPYTNKITSVDRKLKEFQIEKNKRTSYAIGCILMLLI 432

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCIS 347
                     +++     P+ IS       +    +     + +    I   +     + 
Sbjct: 433 GASLGAL---IKKGGFGIPLLISTVFILLYYMVDIFGTKWAKVDIIDTISGAWAPNIVLL 489

Query: 348 SIFLLMIK 355
              L  ++
Sbjct: 490 PFGLFFLR 497


>gi|294776418|ref|ZP_06741896.1| putative membrane protein [Bacteroides vulgatus PC510]
 gi|294449744|gb|EFG18266.1| putative membrane protein [Bacteroides vulgatus PC510]
          Length = 640

 Score = 58.5 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 79/215 (36%), Gaps = 6/215 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++IL+     F+ +    +FI  +  + + ++ +      +++L +   Y   T++
Sbjct: 13  KKLDIFILKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVLAQFFFYSALTLI 72

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    +       +     ELL +   G   + +I+P++     L    F  +N+I
Sbjct: 73  PLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPLIIFCTFLCCTSFYFQNVI 132

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK +  +  L    +       + E +F+   +   I + + +    +    ++ +   
Sbjct: 133 APKAQIKLLTLLVSMKQTSPELDIPEGVFYDEIEGYNIYVKQKDRETGMLKDVLIYNFSD 192

Query: 182 QTHKIYYAQ------SGSIDLDRQAIILNDGEVHR 210
                +           + D     + L +GE   
Sbjct: 193 GFENAHIIWASEGKMEMTADKQHLYLHLYNGEQFE 227



 Score = 42.7 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
             +  + +++HK++T  L  +IF  I    A   A++R+     P+ +S+ I    +   
Sbjct: 370 NNIRKHEADWHKKITLSLSCLIFFFIG---APLGAIIRKGGLGMPVVVSVLIFVIYYIID 426

Query: 323 SYIIHKIEQN-PYYIPILYLFLFCISSIFLLMIKK 356
           S      +      +  +++    ++ I      K
Sbjct: 427 SGATRVAKSGEMNMVLGVWMSTIVLAPIGAFFTYK 461


>gi|303235938|ref|ZP_07322541.1| permease, YjgP/YjgQ family [Prevotella disiens FB035-09AN]
 gi|302483811|gb|EFL46803.1| permease, YjgP/YjgQ family [Prevotella disiens FB035-09AN]
          Length = 650

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 84/223 (37%), Gaps = 2/223 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  F  + +  + +  +  + + ++ +     S+++L +  GYL    +
Sbjct: 20  KKLDIFIAKQFGMLFAGTFVISMVVLMMQSLWKYVDKLVGKGLSIDVLAEFFGYLGLMFV 79

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I  +G S +   + ++ +   ++I  F  +N I
Sbjct: 80  PQALPLAILLSSLITFGNLGESSELTAIKASGISLVKSFRGLIVIISFITIGSFYFQNTI 139

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN--PNNTLQGIFIVDSR 179
            P  +  I Q+    +       + E +F+       + + + N    +    +    + 
Sbjct: 140 APDAQKHIFQMILSMKQKSPELEIPEGIFYNGIPQTNLYVERKNLETGHLYNIMIYRMTD 199

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK 222
             +   I  A SG +    +   L     + +   +     + 
Sbjct: 200 SYEDQAIILADSGMLQSTAEKKHLVLNLWNGEWFENMRSQELS 242


>gi|15836744|ref|NP_297432.1| hypothetical protein XF0139 [Xylella fastidiosa 9a5c]
 gi|9104925|gb|AAF82952.1|AE003867_6 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 361

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 94/256 (36%), Gaps = 5/256 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SF+ + + ++ +     ++  +  ++       +LL   G    + 
Sbjct: 1   MPKLDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIADGHFPAKLLLSQLGLRFISY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I + G     ++  +L L + + + + +    
Sbjct: 61  LPLLLPLALMLGLLLSLGRLYRDSEMAVITSIGVGPGRMLPSILGLVLPVVVLIGVCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T   L  +A  ++  + LE   F  + D   + +S  + + T      + S+ 
Sbjct: 121 LAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVYLSSLSSDGTKLNAVFMQSQK 180

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESANS 235
                +  A+ G +       + + L DG+           +  ++ F        + + 
Sbjct: 181 DGRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPADGAALNYRVLTFARNDALLPALSV 240

Query: 236 STIVLKANDQNLSFLL 251
                  +      L+
Sbjct: 241 VYDSNHPDILPTFNLI 256


>gi|329964131|ref|ZP_08301297.1| permease, YjgP/YjgQ family [Bacteroides fluxus YIT 12057]
 gi|328525651|gb|EGF52680.1| permease, YjgP/YjgQ family [Bacteroides fluxus YIT 12057]
          Length = 633

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 81/205 (39%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++IL+     F+ +    +FI  +  + + ++ +      + +L +   Y   +++
Sbjct: 5   KKLDIFILKSFCMLFMGTFFICLFIFMMQFLWRYVDEMVGKGLEMTVLAQFFFYSALSLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    +       +     ELL +   G S + +++P++     + +  F  +N+I
Sbjct: 65  PASLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIIFICFICLVSFYFQNVI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ ++ +  L    +       + E +F+   D   + +   +    +    ++ + + 
Sbjct: 125 GPQAQTKLWTLLLSMKQKSPEVDIPEGVFYDEIDGYNLYVKHKDRKTGMLYDVLIYNFEK 184

Query: 182 Q--THKIYYAQSGSIDLDRQAIILN 204
                +I  A SG +++      L 
Sbjct: 185 GFENAQIIKADSGRLEMTADKQHLY 209



 Score = 39.2 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
            +    + +     L  + + +H++LT  L  +IF  I    A    ++R+     P+ +
Sbjct: 352 WSFKSYSISQTDTSLRRHMTSWHEKLTLSLACLIFFFIG---APLGGIIRKGGLGMPVVV 408

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIFLLMIKK 356
           S+ + F V++  +   +K+ ++  +I  + ++     ++ +   +  K
Sbjct: 409 SV-LIFIVYYIINNTGYKMARDGKWIVWMGMWTSTAILAPLGAFLTYK 455


>gi|189464158|ref|ZP_03012943.1| hypothetical protein BACINT_00494 [Bacteroides intestinalis DSM
           17393]
 gi|189437948|gb|EDV06933.1| hypothetical protein BACINT_00494 [Bacteroides intestinalis DSM
           17393]
          Length = 632

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 82/205 (40%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++IL+     F+ +    +FI  +  + + ++ +      +++L +   Y   T++
Sbjct: 5   KKLDIFILKSFCTLFMGTFFICLFIFMMQFLWKYVDEMVGKGLEMSVLAQFFFYSALTLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    +       +     ELL +   G S + +++P++   I +    F  +N+I
Sbjct: 65  PASLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIVFIIFICGVSFYFQNVI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK ++ +  L    +       + E +F+   D   + +   N    +    ++ + + 
Sbjct: 125 GPKAQTKLWTLLISMKQKSPELDIPEGVFYDEIDGYNLYVKHKNRKTGMLYDVLIYNFEK 184

Query: 182 Q--THKIYYAQSGSIDLDRQAIILN 204
                +I  + SG +++      L 
Sbjct: 185 GFENAQIIKSDSGRLEMTADKQHLY 209


>gi|89898056|ref|YP_515166.1| hypothetical protein CF0249 [Chlamydophila felis Fe/C-56]
 gi|89331428|dbj|BAE81021.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
          Length = 357

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/362 (11%), Positives = 116/362 (32%), Gaps = 16/362 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      ++    ++     L ++ I+ +  + + ++ ++        +L+++ Y IP +
Sbjct: 1   MPILWKVLIFRYLKTITFCTLSLICISIISSLQEIVSYIA-KDVPYPTVLRLTAYQIPYL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP + P    +    +   ++ N ++  +  +G S   +I P L ++  +    F + + 
Sbjct: 60  LPFILPISCFISAFTLFRGLSDNNQITFLKASGASHGIIIFPALMVSCAICCINFYTCSE 119

Query: 121 IEPKCRSTIKQLSAKAQLALTF---SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
           +   CR    +  A   +         L++    R+   +         N  +      +
Sbjct: 120 LASICRFQTCKEIANMAMTSPTLLLQTLQKKENNRIFITVDHCAKSKFDNVIIALKRDQE 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANSS 236
             +    K       +  +  + +++        +   S +      +S         +S
Sbjct: 180 IANVGIIKTIIPDVANDTVQAKNVVMISKLPSTLTDQHSSNSQEYYIESLNEMLIPKITS 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T+    +         P       +      +  E  +R+   L  +      +V    +
Sbjct: 240 TLFAGKSYMKTRTDYLPWKQ--LVKQSFSHAHLPETLRRIGIGLLCITLTYSGMVLGTYK 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R+   ++ +F  + +   +           +      P L LF+      +++   +
Sbjct: 298 PRFRKPIILYCVFPVMDLILLI---------VGKNTNSLFPALMLFIVPQVISWIVFAIR 348

Query: 357 KY 358
            Y
Sbjct: 349 AY 350


>gi|288800724|ref|ZP_06406181.1| putative permease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332185|gb|EFC70666.1| putative permease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 636

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 81/223 (36%), Gaps = 2/223 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I++  G  F+ +     F+  +  + + I+ +     ++++L +   Y+   ++
Sbjct: 5   KKLDIFIVKQFGLLFIGTFFICQFVLMMQFLWRYIDDLIGKGLTIDVLAQFFWYMGLMLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I   G S +   + ++ + IL++   F  +N I
Sbjct: 65  PQALPLAILLSSLIAYGNLGESSELTAIKAAGISLMQSCRGLIVITILIAFSSFYFQNNI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN--NTLQGIFIVDSR 179
            P     + QL    +     + +   +F+    +  I + K +         +    + 
Sbjct: 125 GPTANLKLAQLILSMRDKSPETQIPVGVFYDGIPNSNIYVQKKDNETGKLYGIMIYRMTG 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK 222
             +   I  A SG +        L       +   +       
Sbjct: 185 SYEDQAIILADSGMLQSTADRKHLLLSLWSGEWFENMQSQEFT 227


>gi|284799560|ref|ZP_06390217.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
 gi|284797388|gb|EFC52735.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
          Length = 181

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 45/128 (35%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +I+  +  +   + +   L +     +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGKGSYNGAKLGQYVLMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +    ++ +I        
Sbjct: 61  AYELMPLAVLIGGLISLSQLASGSELTVIKASGMSTKKLLLILSQFGLIFAIATVALGEW 120

Query: 121 IEPKCRST 128
           + P     
Sbjct: 121 VAPTLSQK 128


>gi|224536882|ref|ZP_03677421.1| hypothetical protein BACCELL_01758 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521506|gb|EEF90611.1| hypothetical protein BACCELL_01758 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 632

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 89/230 (38%), Gaps = 2/230 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++IL+     F+ +    +FI  +  + + ++ +      +++L +   Y   T++
Sbjct: 5   KKLDIFILKSFCTLFMGTFFICLFIFMMQFLWKYVDEMVGKGLEMSVLAQFFFYSALTLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    +       +     ELL +   G S + +++P++   IL+    F  +N+I
Sbjct: 65  PASLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIVFIILICGVSFYFQNVI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK ++ +  L    +       + E +F+   D   + +   N    +    ++ + + 
Sbjct: 125 GPKAQTKLWTLLISMKQKSPELDIPEGVFYDEIDGYNLYVKHKNRKTGMLYDVLIYNFEK 184

Query: 182 Q--THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
                +I  + SG +++      L       +   +     M  K+   +
Sbjct: 185 GFENAQIIKSDSGRLEMTADKQHLYLHLYSGEQFENLKSQNMNQKNVPYR 234


>gi|242310520|ref|ZP_04809675.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239522918|gb|EEQ62784.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 341

 Score = 57.7 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 123/356 (34%), Gaps = 16/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+     + F  + L + FIA V+  ++   +      S   LL +  Y +P +L 
Sbjct: 2   RIKNYLFHSFSQIFFPTFLVLFFIASVVIFIRIAGVTFVVQISFLELLSLYFYTLPLMLF 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P  F +     L+ ++ + EL ++   G S   +IK    +A+L SI LFI   I+ 
Sbjct: 62  FVIPLSFFVACALSLSRLSFDYELPVLFALGMSPNKIIKIFFPIALLASISLFILSLILT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q   + + ++  +        +L + L         +  +    IV     +
Sbjct: 122 PLSDLAYRQFLEERKNSININLQAGEFGQKLGNWLVYV---KENHEDMSYKDIVLLSFGK 178

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
              + +A+   I      +           P    I  + FK+  L+    + S   L  
Sbjct: 179 EGGLIFAKDAKIINKDGVMEAILDNGKIYRPDENAIEKIAFKTLILRNSITDISGQNLGV 238

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
            +         +      R              L+ ++   +F  +S+       +   R
Sbjct: 239 FEYWNRAFYENDRQRKTLRD-------------LSMYVLMSLFPFVSLYFFPLLGVKNPR 285

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            + +   +   +  GVF+  +Y++         + +  ++       +   +++ Y
Sbjct: 286 YQRNHTILQSMLIIGVFYALTYLVANYLPLIGMVLLPIVWGLAGYFGYQRFVRRYY 341


>gi|212690931|ref|ZP_03299059.1| hypothetical protein BACDOR_00419 [Bacteroides dorei DSM 17855]
 gi|237712585|ref|ZP_04543066.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237726895|ref|ZP_04557376.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265752264|ref|ZP_06088057.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212666163|gb|EEB26735.1| hypothetical protein BACDOR_00419 [Bacteroides dorei DSM 17855]
 gi|229435421|gb|EEO45498.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229453906|gb|EEO59627.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263237056|gb|EEZ22526.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 632

 Score = 57.7 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 79/215 (36%), Gaps = 6/215 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++IL+     F+ +    +FI  +  + + ++ +      +++L +   Y   T++
Sbjct: 5   KKLDIFILKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVLAQFFFYSALTLI 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    +       +     ELL +   G   + +I+P++     L    F  +N+I
Sbjct: 65  PLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPLIIFCTFLCCTSFYFQNVI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK +  +  L    +       + E +F+   +   I + + +    +    ++ +   
Sbjct: 125 APKAQIKLLTLLVSMKQTSPELDIPEGVFYDEIEGYNIYVKQKDRETGMLKDVLIYNFSD 184

Query: 182 QTHKIYYAQ------SGSIDLDRQAIILNDGEVHR 210
                +           + D     + L +GE   
Sbjct: 185 GFENAHIIWASEGKMEMTADKQHLYLHLYNGEQFE 219



 Score = 42.7 bits (98), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 46/132 (34%), Gaps = 4/132 (3%)

Query: 226 YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
            +      + +        ++L+   N            +  + +++HK++T  +  +IF
Sbjct: 325 NSYTLAEKDKTLGSAADRTESLASEWNMKSYQTTDADNNIRKHEADWHKKITLSISCLIF 384

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLF 344
             I    A   A++R+     P+ +S+ I    +   S      +      +  +++   
Sbjct: 385 FFIG---APLGAIIRKGGLGMPVVVSVLIFVIYYIIDSGATRVAKSGEMNMVLGVWMSTI 441

Query: 345 CISSIFLLMIKK 356
            ++ I      K
Sbjct: 442 VLAPIGAFFTYK 453


>gi|152990851|ref|YP_001356573.1| hypothetical protein NIS_1107 [Nitratiruptor sp. SB155-2]
 gi|151422712|dbj|BAF70216.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 338

 Score = 57.7 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 128/358 (35%), Gaps = 20/358 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+   +  SFL   L +  IA +I  ++ ++L S    SL  L K+  ++ P +
Sbjct: 1   MPKLLRYLGNHLYESFLSYFLPLFGIASLIFFIKIVSLTSIVQLSLVDLAKLYIFITPQI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +     L  ++ + E +   + G S   +++ +  LA+LLS+ LFI   +
Sbjct: 61  LFFTIPVVFFIAAVTALHKLSFDYETIAFFSLGISPTKIMRYLTLLAVLLSLLLFIIAYM 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ +   K      +     +        +  +       +    N L    ++ + D
Sbjct: 121 LIPQGKQLEKGFYRYKKTEANINLKPSEYGHKFGNWFVYV--QKKDKNNLFENVVLYNFD 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +   ++  + D  +  + L   + +  +     +  + F    L   S +     +
Sbjct: 179 NEQERFITSKKATFDNSQYGLKLTLYDGNAYTYKKGILDQITFTKMDLFDTSTSYYFQYI 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                     LN                          +L+  +  ++ +  A    +  
Sbjct: 239 DPIHYWEKAFLNKQRAFDML-----------------FFLWIALLPVLGMPYAGMIGIHH 281

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R     +F+ +  +  +++GF++++ K       +  + L+ F    +F   I  +Y
Sbjct: 282 PRYHKGGVFLKVLFALFIYFGFAFLLSKTLYYYSLL-FMALWFFGGIYLFHKTIMSRY 338


>gi|317477113|ref|ZP_07936354.1| hypothetical protein HMPREF1016_03338 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316906656|gb|EFV28369.1| hypothetical protein HMPREF1016_03338 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 635

 Score = 57.7 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 89/230 (38%), Gaps = 2/230 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++IL+     F+ +    +FI  +  + + ++ +      +N+L +   Y   T++
Sbjct: 5   KKLDIFILKSFCLLFMGTFFICLFIFMMQFLWKYVDEMVGKGLEMNVLAQFFFYSALTLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    +       +     ELL +   G S + +++P++F   L+    F  +N+I
Sbjct: 65  PASLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIFFISLICCVSFYFQNVI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK ++ +  L    +       + E +F+   D   + +   N    +    ++ + + 
Sbjct: 125 GPKAQTKLWTLLVSMKQKSPEVDIPEGVFYDEIDGYNLYVKHKNRETGMLYDVLIYNFEK 184

Query: 182 Q--THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
                +I  + SG +++      L       +   +     M  K+   +
Sbjct: 185 GFENAQIIKSDSGRLEMTADKQHLYLHLYSGEQFENLKSQNMNQKNVPYR 234


>gi|300728391|ref|ZP_07061753.1| permease, YjgP/YjgQ family [Prevotella bryantii B14]
 gi|299774310|gb|EFI70940.1| permease, YjgP/YjgQ family [Prevotella bryantii B14]
          Length = 631

 Score = 57.7 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 77/204 (37%), Gaps = 2/204 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++++ +  G  F  +     F+  +  + + ++ +      +  L +   Y+   ++
Sbjct: 5   KKLDIFLAKQFGLLFAGTFFICQFVLMMQFLWRYVDDLIGKGIPMTALAQFFWYMGLMMV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +   L ++  ++EL  I   G S +  ++ ++ +  ++ +  F  EN +
Sbjct: 65  PQALPLAILLSSLITLGNLGESSELTAIKAAGISLLQALRSLIVITCIIMMASFYFENNL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN--NTLQGIFIVDSR 179
            P     + QL    +       + E +F+    +  I + K +         +    ++
Sbjct: 125 GPDANMKLSQLLISMKQKSPELEIPEGVFYDGIPNSNIYVQKKDLKSGKLYGIMIYRMTQ 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIIL 203
             +   I  A SG +    +   L
Sbjct: 185 SYEDAAIILADSGMMQSTAEKKHL 208



 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 6/127 (4%)

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
           L TE    +     A  QN    L       +   + +  ++ E   + T  L  +IF  
Sbjct: 330 LSTEQKQQTVASALAKAQNEMSDLEFKSLLTSDGDKNIRRHKIEMVNKFTVALSCLIFFF 389

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI---LYLFLF 344
           I    A   A++R+     P+ IS+ +    +   +       +  + I     L   + 
Sbjct: 390 IG---APLGAIIRKGGLGVPVIISVLVFIIYYILDNSGFRMAREGIWAIWFGKGLAPGVL 446

Query: 345 CISSIFL 351
              +IF+
Sbjct: 447 TPIAIFV 453


>gi|300778309|ref|ZP_07088167.1| permease YjgP/YjgQ family protein [Chryseobacterium gleum ATCC
           35910]
 gi|300503819|gb|EFK34959.1| permease YjgP/YjgQ family protein [Chryseobacterium gleum ATCC
           35910]
          Length = 485

 Score = 57.7 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 92/283 (32%), Gaps = 18/283 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YI++     F      + FI  V  I  ++        S   +LK+  YL   V
Sbjct: 2   LKILDRYIIKTFFGPFFFIFSVLFFIFIVNIIWVQLGQFMGKGLSYWQILKLLFYLGVNV 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P    + +           EL  +   G     ++ P+L ++  L+I LF   N 
Sbjct: 62  ISMVLPLTILLASIMSFGEFGERYELAAMKAAGIPLTRVMTPLLGISTALAIMLFFFSNN 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  +   K +                 F        +K  K           I     
Sbjct: 122 IIPDFQKKAKNMLFNIAQTKPAINFTPGQFIDQIPGYMVKFDK-----------IYGENG 170

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                ++  +  +   ++Q+++   G+    +  +    ++          +     +  
Sbjct: 171 ENIEGVFVHKKANAYENQQSVVAEKGKFVPAANKNYLKLVLYNGYVFEDAFAGKGDNVRQ 230

Query: 241 KANDQNL-------SFLLNPNPNNPNYRPELLETYRSEFHKRL 276
           K  DQ +        F ++   N    + ++ + YR + + +L
Sbjct: 231 KQPDQAIKFDTLVSHFDISEIINKAIEKEQITDDYRFQTYNQL 273


>gi|285019432|ref|YP_003377143.1| permease [Xanthomonas albilineans GPE PC73]
 gi|283474650|emb|CBA17149.1| putative yjgp/yjgq family permease protein [Xanthomonas
           albilineans]
          Length = 361

 Score = 57.7 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 98/256 (38%), Gaps = 5/256 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+LR   +SF  + + ++ ++    ++  +  ++       +L    G      
Sbjct: 1   MPKLDRYLLRDFFQSFSATLIVLLVVSVGGVLVDVLGNIADGRIPAKLLFSQLGLQFVVY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     L++P+L L + +   + +    
Sbjct: 61  LPLILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRLLRPILMLVVPVVTLVGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T  QL  +A  +L  + LE   F  L D   + +S  + + T      V  + 
Sbjct: 121 LGPWADRTSDQLVNEANHSLLMAGLEAGRFTSLPDGSIVYVSTLSGDGTRLSKVFVQRQK 180

Query: 181 TQTHKIYYAQSGSIDLD---RQAIILNDGEVHR--KSPISKDISIMKFKSYTLQTESANS 235
                +   Q G++  +    + + L DG       +    D  +M+F +  +     ++
Sbjct: 181 DGRLDVVTGQRGAMFFEGKAERYLRLEDGYRFEGPLAGDGLDYRMMRFANNDVALSERSA 240

Query: 236 STIVLKANDQNLSFLL 251
           +           + L+
Sbjct: 241 ARKDDDPALLTTAALI 256


>gi|282880145|ref|ZP_06288865.1| putative membrane protein [Prevotella timonensis CRIS 5C-B1]
 gi|281306018|gb|EFA98058.1| putative membrane protein [Prevotella timonensis CRIS 5C-B1]
          Length = 635

 Score = 57.7 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 70/183 (38%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++  +  G  F  +     F+  +  + + ++ +     S+ I+ +   Y+   ++
Sbjct: 5   KKLDIFTAKQFGLLFAGTFFICQFVLMMQFLWRYVDDLIGKGLSMEIMAQFFWYMGLFLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  N+EL  I ++G S     +P++ L I +S   F  +N +
Sbjct: 65  PQALPLAVLLSSLITFGNLGENSELTAIKSSGISMFRTFQPLISLTIFISFSSFYFQNYV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK    + QL    +       + E +F+    +  + + K +         ++     
Sbjct: 125 GPKANMKLAQLILSMKQKSPELEIPEGIFYDGIPNSNLYVQKKDVETGKLYGIMIYRMTG 184

Query: 182 QTH 184
              
Sbjct: 185 SYE 187



 Score = 38.4 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 12/136 (8%)

Query: 221 MKFKSYTLQTESANSSTIVLKANDQNLSFL--LNPNPNNPNYRPELLETYRSEFHKRLTQ 278
             F +   +  +     ++  A     S +  LN      +   ++L  +R E   + T 
Sbjct: 321 FVFDTIYNKLSNDQKINVMNMALSNIQSEISELNFQSMITSDGDKMLREHRIEMIGKFTL 380

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---- 334
            L  +IF  I    A   A++R+     PI IS+ +    +   +          +    
Sbjct: 381 ALTCLIFFFIG---APLGAIIRKGGLGFPIIISVLVFIIYYIFENTGYRMARSGIWTVNF 437

Query: 335 ---YIPILYLFLFCIS 347
                P + + L    
Sbjct: 438 GKGLAPAVLIPLAAFV 453


>gi|237756215|ref|ZP_04584779.1| putative membrane protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691625|gb|EEP60669.1| putative membrane protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 336

 Score = 57.3 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/353 (14%), Positives = 115/353 (32%), Gaps = 23/353 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+++   ++FL+       I    Q+L   +     + ++    K+   +  + 
Sbjct: 1   MKILDKYLIKLFFKNFLLLIGLFSLIITSSQLLHLPSFA--YSMNIIDFSKLLFLIDISF 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +     F F +    V  S+    E+  + + G S+  L+KPV  + ++  I  F+   +
Sbjct: 59  IKYQLLFAFFISWLLVGISLRDKNEIYAVYSAGISKKQLLKPVFIMTVIFVIIAFVFSTV 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P       +       +     +    F +++D++ + + K       +     +   
Sbjct: 119 IVPSANRERYKFLTYKVKSYILENVSPKNFSKINDNVSVYVEKK------EKNTFYNILI 172

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                 Y   +         +IL DG +   S  S D    +  +++L        ++  
Sbjct: 173 YNASSGYLITAKEGMFISNNLILKDGYIQLPSGKSFDTIKYEKYTFSLDVSYIKEISMQD 232

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                          +      E      S    R    +  +  G I         +  
Sbjct: 233 -----------FKTKDLLRLAVEEDSKALSILADRFYFAIPFMFLGFIGF----LSGINT 277

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            R K   +  ++S+S G      Y +  IE+ P    +  + L  I  +   +
Sbjct: 278 YRSKETLLTFAVSLSIGYMVLNYYFLKIIEKVPVLFFVYPIVLVAIFYLVYKL 330


>gi|149373007|ref|ZP_01891963.1| hypothetical protein SCB49_11577 [unidentified eubacterium SCB49]
 gi|149354367|gb|EDM42934.1| hypothetical protein SCB49_11577 [unidentified eubacterium SCB49]
          Length = 515

 Score = 57.3 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 97/275 (35%), Gaps = 23/275 (8%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           +FI  +  I   I+ ++     ++I+LK   +  P ++ +V P    + +  V       
Sbjct: 1   MFIFILQGIWLYISELAGKDLDISIVLKFLWFYSPRIVTLVLPLSILVTSLMVFGGFAER 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   + +TG S    ++ +    +LL I  F   N + P      + L    Q      
Sbjct: 61  YEFAAMKSTGISLQRAMRSLSVFILLLGITAFFFSNNVIPYSEYKWQNLRRNIQQFKPSM 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT-----QTHKIYYAQSGSIDLDR 198
            +    F ++ D+L IK+++ +  N      ++  R           +  A+ G +  + 
Sbjct: 121 VIAAGQFNQIGDELNIKVAEKSGENGEFLEGVIIHRKDMKKPSNNLIVTIAEKGELTSEE 180

Query: 199 QAI----ILNDGEVHRKSPISKDISIMK-------FKSYTLQTESA-------NSSTIVL 240
            +     IL +G  +++          +       F+ YT+  +         +    + 
Sbjct: 181 GSNTLSLILKNGYDYQELIEKDYKKQHREPYVKTYFEEYTINIDLTALNAKDVDQENNIS 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
             N  N+  L     +  +   + LE +    + R
Sbjct: 241 NQNMYNIGELATEIDSLSDAYSKNLEQFAENMYHR 275



 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/105 (10%), Positives = 36/105 (34%), Gaps = 4/105 (3%)

Query: 253 PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISL 312
               +   R   L  Y    H+++      +I   I    A   A++R+     P+ +++
Sbjct: 327 AKKEDSKNRVRKLNKYEIALHEKIVLGFACIILFFIG---APLGAIIRKGGMGLPMVVAV 383

Query: 313 SISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMIKK 356
            +     +   +  +  E    +  +  ++    +  + + +  +
Sbjct: 384 VLFLTYHFIGIFAKNSAEDGSIHPFLGTWISTLIMLPLSIWLTYR 428


>gi|15834847|ref|NP_296606.1| hypothetical protein TC0227 [Chlamydia muridarum Nigg]
 gi|270285013|ref|ZP_06194407.1| hypothetical protein CmurN_01133 [Chlamydia muridarum Nigg]
 gi|270289036|ref|ZP_06195338.1| hypothetical protein CmurW_01188 [Chlamydia muridarum Weiss]
 gi|301336411|ref|ZP_07224613.1| hypothetical protein CmurM_01210 [Chlamydia muridarum MopnTet14]
 gi|7190266|gb|AAF39099.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
          Length = 354

 Score = 57.3 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/360 (11%), Positives = 116/360 (32%), Gaps = 15/360 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      ++    ++ +   L ++ I+ +  + + ++ ++        + +++ Y IP +
Sbjct: 1   MPILWKVLIFRYLKTTVFCTLSLICISIISSLQEIVSYIA-KDVPYATVFRVTAYQIPYL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP + P    +    +   ++ N ++  +  +G S+  +I P+L  + +L  F F + + 
Sbjct: 60  LPFILPASCFISAFTLFRKLSDNNQITFLKASGASQGMIIFPILITSGILCCFNFYTCSE 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI---SKYNPNNTLQGIFIVD 177
           +   CR    +  A   +      L+       D               N  +      +
Sbjct: 120 LASICRFQTGKEIANIAMTSPALLLQTLQKKENDRIFIAIDHCGKSKFDNVIIALKHNQE 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +    +          +  + +++           + + +    ++         ++T
Sbjct: 180 ISNIGFVETIIPDVNKDSVQAKNVLVISKVPLFSEARTSNPNEFYLETLDELFIPKITAT 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +    +         P         + +  + +E  +R+   L         +     + 
Sbjct: 240 LFAGKSYMKARTDYLPWKQLI----QDVHLHLAEILRRVAIGLLCSTMTFSGLALGTYKP 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R+        + + + F V      I+ K   +P    +L+LF   +S +       K
Sbjct: 296 RFRK-------PVLIYVLFPVLNLIFLIVGKNTTHPISALMLFLFPQLLSWLIFSWRIYK 348


>gi|312885912|ref|ZP_07745544.1| permease YjgP/YjgQ family protein [Mucilaginibacter paludis DSM
           18603]
 gi|311301719|gb|EFQ78756.1| permease YjgP/YjgQ family protein [Mucilaginibacter paludis DSM
           18603]
          Length = 463

 Score = 56.9 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 6/114 (5%)

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
           ++L  ++ P  +      ++L  Y  E+ K+ T     ++  LI    A   A++R+   
Sbjct: 327 RSLKDIVKPKGDTYIENDKILRRYLIEYQKKFTLSAACLVLFLIG---APLGAIIRKGGL 383

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
             P+ IS+   F +++  S I  K  ++    P+L  ++ +F ++ I L +  K
Sbjct: 384 GLPVVISVVF-FLIYYIISTIGEKSAKDGNISPVLGTWVAIFVLAPIGLFLSYK 436



 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 66/163 (40%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           +F+  ++ + + I+ +         +L++  Y   T + M  P    + +     ++  N
Sbjct: 1   MFVLLMLFLWKYIDDLIGKGFEWYTILELMMYASATNVAMALPLSVLLSSIMTYGTLGEN 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            EL+ I + G S    + P++ +   LS+  F   + + P        L   A+   + S
Sbjct: 61  YELVAIKSAGISLSRALYPMVIVVAALSVAAFAFSDYMLPVANLKFYSLLYDARKQKSAS 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
            ++E +F        +++ K +P+  L    ++  R   +  +
Sbjct: 121 LIKEGVFNNSFPGYSVRVQKKDPDGQLLHGVMIYERAGGSTSM 163


>gi|257461390|ref|ZP_05626486.1| ribonuclease PH [Campylobacter gracilis RM3268]
 gi|257441113|gb|EEV16260.1| ribonuclease PH [Campylobacter gracilis RM3268]
          Length = 343

 Score = 56.9 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 105/326 (32%), Gaps = 16/326 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+      SF      +  I  ++  LQ   + S    + + L+K+  +++P +
Sbjct: 1   MDRVQRYLFSNFVGSFASLFSTLFIIMSIVFFLQIARITSFIEINFSELVKLYLFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  +  L  +++  E ++I   G +   ++      A L S+ L      
Sbjct: 61  LIFTVPIAFFVALSISLFRLSKENETIVIFTIGYATRKIVLFFGISAALCSLALLFVSLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +         +++ T +        +  D L    S+ N   +     +V    
Sbjct: 121 MMPIAENLKDNFIDYKKISATLNIKSNEFGQKFSDWLVFIDSQENNGTSTLYKDLVLYNP 180

Query: 181 TQTH---KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +    ++  A+SG    +  +      +    +       + +F+S TL+T+S  +  
Sbjct: 181 GGSQDHERMIVARSGEFKNENASFSAMLHDGKIYTMGGDQWHVSEFESLTLRTQSDRNIR 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                                       E  R EF       LFP+   L ++       
Sbjct: 241 GGGGVIGYWS-------------EMGGSEKRRKEFSIYTLVSLFPLASFLFALSLGIVTY 287

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFS 323
              +      IF  L   F +    S
Sbjct: 288 RYEKGFVYAGIFGVLFSYFALIMLLS 313


>gi|323344722|ref|ZP_08084946.1| hypothetical protein HMPREF0663_11482 [Prevotella oralis ATCC
           33269]
 gi|323093992|gb|EFZ36569.1| hypothetical protein HMPREF0663_11482 [Prevotella oralis ATCC
           33269]
          Length = 633

 Score = 56.9 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 78/209 (37%), Gaps = 2/209 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  F+ +     F+  +  + + I+ +     S+ ++ +   Y    ++
Sbjct: 5   KKLDIFIAKQFGLLFIGTFFICQFVLMMQFLWKSIDELVGKGLSMEVMAQFFWYAGLMLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I   G S I   + ++ ++I++S   F  +N +
Sbjct: 65  PQALPLAILLSSLIAFGNLGESSELTAIKAAGISLIQAFRSLIIISIIISFSSFYFQNYV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN--NTLQGIFIVDSR 179
            P     I QL    +       + E +F+    +  + + K +         +    + 
Sbjct: 125 GPTANMKIAQLWISMKQKSPELAIPEGIFYDGIPNSNLYVQKKDMETGKLYGIMIYRMTG 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV 208
             +   I  A SG +    +   L     
Sbjct: 185 SYEDQAIILADSGMLQSTAEKKHLVLTLW 213



 Score = 38.1 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 7/100 (7%)

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
             +L+  +R E   + T  L  +IF  I    A   A++R+     P+ IS+ +    + 
Sbjct: 363 GDKLIREHRIEMISKFTLALSCLIFFFIG---APLGAIIRKGGLGVPVIISVLVFIVYYI 419

Query: 321 GFSYIIHKIEQNPYYI----PILYLFLFCISSIFLLMIKK 356
             +          + I     +    L  +++       K
Sbjct: 420 LDNTGYRMARGGMWTIEFGKGLAPAVLIPLAAFVTYKANK 459


>gi|317014475|gb|ADU81911.1| hypothetical protein HPGAM_05615 [Helicobacter pylori Gambia94/24]
          Length = 345

 Score = 56.9 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 120/352 (34%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKTENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN    H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYNGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ + F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGVYFLMVHVISTDLFLMT-----FFFPFIWAFASYLLFRKFIVKRY 345


>gi|332976302|gb|EGK13159.1| permease YjgP/YjgQ [Psychrobacter sp. 1501(2011)]
          Length = 467

 Score = 56.9 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 82/214 (38%), Gaps = 1/214 (0%)

Query: 31  QILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIID 90
           ++++   + +     + +L  I GY +P  L +V P  F +    V   +  + E+ +++
Sbjct: 24  RMIRYFGIAAEGRLDVGLLFAIIGYNLPYFLELVLPLSFFIGLMLVFGRLYVDQEMAVLN 83

Query: 91  NTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLF 150
            +G SR  L + ++   +LL +F        +P      + +  +  L+  F  +    F
Sbjct: 84  GSGISRGRLARLMIPFILLLFVFEAGLSLYGKPWGVRNSENIWQQQSLSSAFDLIRPQTF 143

Query: 151 FRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHR 210
              D D ++ +   N + T     I+     Q          ++  D+Q+    + +  +
Sbjct: 144 ISSD-DYHLYVGSMNDDRTELQDVILVQTADQGITGAKPDLTNLGADQQSQDSVNTDTAQ 202

Query: 211 KSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
               +K   +      T+   +   +T   +A +
Sbjct: 203 VDEQAKKPELSPKADKTITELTKPVATSSTEAQE 236



 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/182 (9%), Positives = 50/182 (27%), Gaps = 23/182 (12%)

Query: 192 GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLL 251
           GS   D   + L  G  +     S   + + F+ Y +         I           +L
Sbjct: 257 GSDTGDTTQLDLFQGRRYEVGADSLVYNQVSFERYRISINQPPKDIITDDNVATQTLPVL 316

Query: 252 NPNP--------------------NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                                          + +   ++E   RLT     ++  ++++ 
Sbjct: 317 WQAATGQAAPVIDLSVDPTKASPVKTQKPDAQQVIAAQAELGYRLTLPWLIILAPMLAVP 376

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            A    +  ++ +   +  ++ I          + + + +    +    L +     + L
Sbjct: 377 LA---QVRPRQGRWLRLLPAIIIYASCALVIISLKNSVTKGSVSVLSYPLTIIGFMVLAL 433

Query: 352 LM 353
            +
Sbjct: 434 YL 435


>gi|71064626|ref|YP_263353.1| hypothetical protein Psyc_0045 [Psychrobacter arcticus 273-4]
 gi|71037611|gb|AAZ17919.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 416

 Score = 56.9 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 64/168 (38%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           +    ++++   + +     +++L  I GY +P  L ++ P  F +    V   +  + E
Sbjct: 1   MMLGGRLIRYFGIAAEGNLDISLLFTIIGYNLPYFLELILPLAFFIALMLVFGRLYVDQE 60

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           + +I+ +G SR  L + +  L + L +       + +P    + + +  +  L   F  +
Sbjct: 61  MAVINASGISRGRLGRLMTPLILALFVGEAALSIVGKPWGVRSSENVWQQQALTSAFDLI 120

Query: 146 EENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGS 193
             N F    +      S  +    LQ + ++ S   +        +  
Sbjct: 121 RPNQFISSGNYHLYVGSLSDDKKQLQDVILIQSEPEKKGSAVKNNTAK 168



 Score = 56.5 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 47/155 (30%), Gaps = 6/155 (3%)

Query: 203 LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND-QNLSFLLNPNPNNPNYR 261
           L  G  +     S   + + F  Y +    ++   I     + Q +  L      N    
Sbjct: 232 LFQGRRYEVGAGSLKYNQVGFDRYRITLTESSKEVITEDNIETQAIGPLWQAATGNAQVG 291

Query: 262 PELLETYRS-EFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
                     E   RL+     +I  ++++  A    +  ++ +   +F S+ +      
Sbjct: 292 SNNAMRAAQGELGYRLSLPWLMIIAPMLAVPLA---QVRPRQGRWLRLFPSILLFVSCVL 348

Query: 321 GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           G   + + + +        Y +L        L I 
Sbjct: 349 GIISLKNAVGK-GSVSVWAYAWLILGFMALALYIN 382


>gi|332290859|ref|YP_004429468.1| permease YjgP/YjgQ family protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332168945|gb|AEE18200.1| permease YjgP/YjgQ family protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 528

 Score = 56.9 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 88/241 (36%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           +FI  +  +   I  ++      ++++K   + +P+++ +V P    + +     +   N
Sbjct: 1   MFIFVLQSVWLYIQELAGRDLDFDVIIKFLLFAMPSLVTLVLPLSVLLTSIMTFGNFAEN 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   + +TG S    +K V++  I L+I  F+  N I P  +   + L           
Sbjct: 61  YEFAAMKSTGISLQRAMKSVIYFVIFLAIGSFLFANHIIPASQIEFRNLRRNIGKLKPAM 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIIL 203
            +    F  + +D  ++++K   +       IV  +  +     Y    + + +  + I 
Sbjct: 121 LIRSGQFNEITEDFNMRVAKKYGDRDQYLRDIVIHQAEKGRMGNYTVIIASEGELISSID 180

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPE 263
           +     + +  +    + K      + E    S       + +LS L   + ++ +    
Sbjct: 181 SPTLSLKLTDGNYYTEVQKKDYKERKKEPFAKSYFETYTLNIDLSELDAVDLDDKDINNS 240

Query: 264 L 264
            
Sbjct: 241 Y 241



 Score = 47.3 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 37/112 (33%), Gaps = 4/112 (3%)

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
           N    L    N      + L  +    H++       ++   +    A   A++R+    
Sbjct: 320 NTVADLENRKNKLKVDVKRLSKFEISLHEKYVLGFSCILLFFVG---APLGAIIRKGGLG 376

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL-YLFLFCISSIFLLMIKK 356
            PI I + +     +   +  +  E N     +  +L  F +  + + +  +
Sbjct: 377 LPIVIGVVVFLTFHFIGIFAKNSAENNSISPFVASWLSTFILLPLGIYLTYR 428


>gi|71901308|ref|ZP_00683405.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
 gi|71728928|gb|EAO31062.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
          Length = 408

 Score = 56.9 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 94/256 (36%), Gaps = 5/256 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SF+ + + ++ +     ++  +  ++       +LL   G    + 
Sbjct: 48  MPKLDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIADGHFPAKLLLSQLGLRFISY 107

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I + G     ++  +L LA+ + + + +    
Sbjct: 108 LPLLLPLALMLGLLLSLGRLYRDSEMAVITSIGVGPGRMLPSILGLALPVVVLIGVCSLW 167

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T   L  +A  ++  + LE   F  + D   + +S  + + T      + S+ 
Sbjct: 168 LAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVYLSSLSSDGTKLNAVFMQSQK 227

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESANS 235
                +  A+ G +       + + L DG+           +  ++ F          + 
Sbjct: 228 DDRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPTDGAALNYRVLTFARNDALLPELSV 287

Query: 236 STIVLKANDQNLSFLL 251
                  +      L+
Sbjct: 288 VYDSNHPDILPTFNLI 303


>gi|325108543|ref|YP_004269611.1| permease YjgP/YjgQ family protein [Planctomyces brasiliensis DSM
           5305]
 gi|324968811|gb|ADY59589.1| permease YjgP/YjgQ family protein [Planctomyces brasiliensis DSM
           5305]
          Length = 374

 Score = 56.9 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/373 (9%), Positives = 96/373 (25%), Gaps = 22/373 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-------ESLNILLKIS 53
           +  FE  + R       +    I+ +  +I +   ++   + +        ++ I+    
Sbjct: 2   LTIFERSVFRQFLFVNAVFLCVIMGLFTIIDLFDNVDDFVNHSGEGGFPVIAMKIVGYYG 61

Query: 54  GYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113
              +        P    +     +  + R  ++    + G     ++ P L   + +   
Sbjct: 62  KMGLFIFDAAAVPMIA-ISLLTTMLMLKRKGQIKPFLSAGIPAYRVLTPALLCGVCVMTG 120

Query: 114 LFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
           L ++   I     +     + + +                       +            
Sbjct: 121 LKMANREILL-GNAVHHLHATRGKSQSQHRVAPRYDHASHILIDGWAVYPEASRIEQAAF 179

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDR----QAIILNDGEVHR----KSPISKDISIMKFKS 225
            +             A        +       +L   E        +   +   I   + 
Sbjct: 180 VLPPEIAGNDMICLKAAEAKFYPKQGKRPSGWLLRQSEPKIDSIPLTEAGRQYVIRSRQP 239

Query: 226 YTLQTESANSSTIVLKAND----QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
             +   S  S  ++ KA +     +   LL     +P              H R+ + + 
Sbjct: 240 ENVFVVSDVSPDLIYKAKESSAFLSTRQLL-LRIRSPAIDSNTARDLEFNLHARIVEPVL 298

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
             +   I+I    ++             + L I     +   ++       P     L L
Sbjct: 299 TGLMVWIAIPLILRKESRGMIIAAGNCGLWLFIVIASTYAVRFMASGSLVTPVQAAWLPL 358

Query: 342 FLFCISSIFLLMI 354
           +L    +++L+ +
Sbjct: 359 YLATPMAVWLVNL 371


>gi|198276083|ref|ZP_03208614.1| hypothetical protein BACPLE_02270 [Bacteroides plebeius DSM 17135]
 gi|198270895|gb|EDY95165.1| hypothetical protein BACPLE_02270 [Bacteroides plebeius DSM 17135]
          Length = 630

 Score = 56.5 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 72/189 (38%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++++L+     F  +    +FI  +  + + ++ +      +N+L +       T++
Sbjct: 5   KKLDIFVLKSFLLLFSGTFFICLFIFMMQFLWRYVDELVGKGLEINVLAQFFFLSALTLI 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    +       +     ELL +   G     +I+PV+   + L +  F  +N+I
Sbjct: 65  PLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLFRIIRPVVLFCMFLGVMSFFFQNVI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK +  +  L    +       + E +F+   +   I + K + +  +    ++ +   
Sbjct: 125 GPKAQKELWTLLVSMKQKSPEVDIPEGVFYSDIEGYNIYVKKKDRDTGILKDVLIYNFSD 184

Query: 182 QTHKIYYAQ 190
                +   
Sbjct: 185 GFENAHIIW 193



 Score = 44.6 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
           +L    +            +  ++S++HK++T  L  +IF  I    A   A++R+    
Sbjct: 346 SLMSDWSMKSYMTREADNNIRRHQSDWHKKITLSLACIIFFFIG---APLGAIIRKGGLG 402

Query: 306 HPIFISLSISFGVFWGFSYI---IHKIEQNPYYIPILYLFLFCISSIFL 351
            P+ IS+ I    +   S         E N      +   +      FL
Sbjct: 403 MPVVISVLIFVLYYIIDSGATRVAKSGEMNIILGTWMSTIILAPLGGFL 451


>gi|307637757|gb|ADN80207.1| integral membrane protein [Helicobacter pylori 908]
          Length = 345

 Score = 56.5 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 120/352 (34%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKAENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN    H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYNGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDATYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ + F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGVYFLMVHVISTDLFLMT-----FFFPFIWAFISYLLFRKFILKRY 345


>gi|224026840|ref|ZP_03645206.1| hypothetical protein BACCOPRO_03597 [Bacteroides coprophilus DSM
           18228]
 gi|224020076|gb|EEF78074.1| hypothetical protein BACCOPRO_03597 [Bacteroides coprophilus DSM
           18228]
          Length = 631

 Score = 56.5 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 79/215 (36%), Gaps = 6/215 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++++L+     F  +    +FI  +  + + ++ +      + +L +       T++
Sbjct: 5   KKLDIFVLKSFLLLFAGTFFICLFIFMMQFLWRYVDELVGKGLEIKVLAQFFFLSALTLI 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    +       +     ELL +   G   + +++PV+   +LL +  F  +N++
Sbjct: 65  PLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIMQPVILFCVLLGLTSFFFQNVV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            PK +  +  L    +       + E +F+   D   I + + +    +    ++ +   
Sbjct: 125 GPKAQKELWTLIVSMKQKSPEVDIPEGVFYSDIDGYNIYVKQKDRETGILKDVLIYNFSD 184

Query: 182 QTHKIYYAQSGS------IDLDRQAIILNDGEVHR 210
                +   +         D     + L +GE   
Sbjct: 185 GFENAHIIWAAEGKLELTADKQHLYLHLYNGEQFE 219



 Score = 42.7 bits (98), Expect = 0.082,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
           +LS   +            +  +RS++HK++T  L  +IF  I    A   A++R+    
Sbjct: 346 SLSSDWSMKSYLTKETDANIRGHRSDWHKKITLSLACIIFFFIG---APLGAIIRKGGLG 402

Query: 306 HPIFISLSISFGVFWGFSYI---IHKIEQNPYYIPILYLFLFCISSIFL 351
            P+ +S+ I    +   S         E N      +   +      FL
Sbjct: 403 MPVVLSVLIFILYYIIDSGATRVAKSGEMNIILGTWMSTLVLAPLGGFL 451


>gi|152993423|ref|YP_001359144.1| hypothetical protein SUN_1840 [Sulfurovum sp. NBC37-1]
 gi|151425284|dbj|BAF72787.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 341

 Score = 56.5 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 124/354 (35%), Gaps = 21/354 (5%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           YI     ++FL   +    I  ++ +++  +L +    +   LL +  Y +P ++    P
Sbjct: 7   YISSNFTKAFLTIFIPFFLIISLVYLVKISSLTAQIQINFLELLLLYSYSLPNIIFYTIP 66

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F    TN L  ++++ EL+ +   G     +++ +L L IL S+ L     +  P  +
Sbjct: 67  LSFIAAVTNTLMKLSQDNELIALYALGLKAKKVLRSILLLGILFSVLLSTLSFLGIPISK 126

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
                   K +   T + +   L  +  D       K   +     + I +       + 
Sbjct: 127 QLYNAFKEKKKTEATLNIIPGKLGQKFGDYYIYVKEKDEKSKLFHDMVIYNRTKKDAEQF 186

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
           + ++ G ++ D+    L   E +  +     +   K+KS  L+   +         +  +
Sbjct: 187 FSSKQGQLNRDKLVASLLLKEGYGYTYTKNKLQQAKYKS--LEVFDSKQKYRFHFQDIVS 244

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
              L+  + +                  R+ + LF +   LI I++    A        +
Sbjct: 245 YWALIKTDKH------------------RMGRALFYLFVSLIPILSVYLVAAFAMINPRY 286

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
               S  I F +      I   +E+      ++ L    I     ++ +K+  +
Sbjct: 287 QANYSFIIIFSITLSLYLIASSLEKWGDIPALI-LTAIVIFIFGRVIFEKRVAR 339


>gi|154148833|ref|YP_001406853.1| permease YjgP/YjgQ [Campylobacter hominis ATCC BAA-381]
 gi|153804842|gb|ABS51849.1| permease YjgP/YjgQ [Campylobacter hominis ATCC BAA-381]
          Length = 353

 Score = 56.5 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 112/352 (31%), Gaps = 9/352 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F+ YI     + F++  + + F    I +L  +       +S N+ L          
Sbjct: 1   MKIFQKYIGWTYFKYFVILFVALEFFYVGIDVLTNLKDF---PQSANLGLLYIAITAVAA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P            +M RN E +     G  + +LI P   +A+ ++       N 
Sbjct: 58  ITYTLPLSLVFALIIAKFNMIRNNEFISFFALGVPKNSLIIPPFLIALFITFGYISLNNT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I         +         + +   ++L  + D +            T + +  +++  
Sbjct: 118 IFV----KAVKFQKNITNFASLNENADDLLLKYDGNFIYMSKLNPKEKTAKDVIFLETNG 173

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS-PISKDISIMKFKSYTLQTESANSSTIV 239
           T       ++ G  +  +      +     ++  + +     KF+    +  + + +TI 
Sbjct: 174 TNLISKAISKKGVYNDKKWLFSDVNTTFLPQNLRLGEQGLTYKFEKNAQKLNNFDPNTIK 233

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
              +      +     +   ++ + +     + +       FP+    + ++      ++
Sbjct: 234 NVYDSSQTYTIYEAIKSIKTFKNQGINVQTLKAN-LFVMIFFPLFAPFMVLILYYYLPVI 292

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            +   +  +  +  I     WG  +++ +   N   IP + + L        
Sbjct: 293 SRFFNLALLSFAFFIITLCVWGILFVLVRFSLNGVIIPEIGIILPIFVMFCY 344


>gi|15612083|ref|NP_223735.1| hypothetical protein jhp1018 [Helicobacter pylori J99]
 gi|4155611|gb|AAD06602.1| putative [Helicobacter pylori J99]
          Length = 345

 Score = 56.5 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 118/352 (33%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S   + K  + L++L+S  L     I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLAFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKTENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN    H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYNGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ + F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGVYFLMVHVISTDLFLMT-----FFFPFIWAFISYLLFRKFILKRY 345


>gi|208434987|ref|YP_002266653.1| hypothetical protein HPG27_1034 [Helicobacter pylori G27]
 gi|298735907|ref|YP_003728432.1| hypothetical protein HPB8_411 [Helicobacter pylori B8]
 gi|208432916|gb|ACI27787.1| hypothetical protein HPG27_1034 [Helicobacter pylori G27]
 gi|298355096|emb|CBI65968.1| conserved hypothetical protein [Helicobacter pylori B8]
 gi|317012864|gb|ADU83472.1| hypothetical protein HPLT_05405 [Helicobacter pylori Lithuania75]
          Length = 345

 Score = 56.5 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 121/352 (34%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKAENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN  + H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ + F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGVYFLMVHVISTDLFLMT-----FFFPFIWAFGSYLLFRKFILKRY 345


>gi|261838424|gb|ACX98190.1| integral membrane protein [Helicobacter pylori 51]
          Length = 345

 Score = 56.5 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 121/352 (34%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKAENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN  + H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ + F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGVYFLMVHVISTDLFLMT-----FFFPFIWAFVSYLLFRKFILKRY 345


>gi|304383499|ref|ZP_07365959.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304335309|gb|EFM01579.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 634

 Score = 56.5 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 82/204 (40%), Gaps = 2/204 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  F+ + +   F+  +  + + ++++     +L IL +   Y+   ++
Sbjct: 5   KKLDIFITKQFGLLFVGTFVICQFVLMMQFLWRWVDILIGKGLALEILAQFFWYMGLMLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +  V  ++  ++EL  I   G S +   + ++ L+ L++I  F  +N +
Sbjct: 65  PQALPLAILLSSLIVFGNLGESSELTAIKAAGISLMQSFRSLILLSCLIAIGSFYFQNNV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN--TLQGIFIVDSR 179
            P+  S +  L    +       + E +F+       + + K N +       +    + 
Sbjct: 125 GPEANSRLNVLIQSMRHKNPELEIPEGIFYDGIPQSNLYVQKKNRDTGVLYGIMIYRMTD 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIIL 203
             +   I  A SG +        L
Sbjct: 185 SYEDAAIILADSGRLQTTADRKHL 208



 Score = 36.1 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
             +L+  +  E   + T  L  +IF  I    A   A++R+     P+ IS+ +    + 
Sbjct: 363 GDQLIREHDIEAISKFTLALSCLIFFFIG---APLGAIIRKGGLGVPVIISVLVYIIYYI 419

Query: 321 GFSYIIHKIEQNPYYIPI---LYLFLFCISSIFL 351
             +          + +     L   +    SIF+
Sbjct: 420 LDNSGYRMARGGMWTVWFGKGLAPAVLIPLSIFI 453


>gi|254779645|ref|YP_003057751.1| hypothetical protein HELPY_1062 [Helicobacter pylori B38]
 gi|254001557|emb|CAX29575.1| Conserved hypothetical protein; putative membrane protein; putative
           signal peptide [Helicobacter pylori B38]
          Length = 345

 Score = 56.5 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 121/352 (34%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKAENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN  + H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ + F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGVYFLMVHVISTDLFLMT-----FFFPFIWAFASYLLFRKFILKRY 345


>gi|32266995|ref|NP_861027.1| hypothetical protein HH1496 [Helicobacter hepaticus ATCC 51449]
 gi|32263047|gb|AAP78093.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 359

 Score = 56.5 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/358 (10%), Positives = 106/358 (29%), Gaps = 12/358 (3%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              ++     + F +  L +      I +L+ ++ +     S N+L+    Y     L  
Sbjct: 2   IFRFVGVYYLKYFFIIFLGLEGFFLAIDMLKYVDELPD---SANLLILFLFYNGIFALTY 58

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    + +     +  ++++L  +   G S+  ++ P+L ++ +              
Sbjct: 59  TLPISLVLCSILFYMAFLKSSQLTALMALGYSKRQILAPLLVISSVFIGGFIGLNTTSFA 118

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +   + +  +         L      +      +                    + + 
Sbjct: 119 YAKEYAESIIYQQNTQNARENLLLKSDNQYIFIRKLYPLLNEQARAEGIKVFTLDGEHKL 178

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPI---SKDISIMKFKSYTLQTESANSSTIVL 240
              + AQ    + +    IL + +    +      +    +         +  +S  +  
Sbjct: 179 KNYHEAQEAFFENN--VWILKNVKSLEIASSLTLGEKALKITTSGEIEILKDFSSKVLET 236

Query: 241 KANDQNLSFLLNPNPNNPNYRPEL--LETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            A D+  + +++   +      +    +  RS  +  L    F  +   I+I++    +L
Sbjct: 237 IAQDKPTASVIDAIASLRIAHKQNVSSDKIRSILYALLVIPFFVPLC--IAIISYYIPSL 294

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            R        F+ +  +  V+  F  +         Y  I  L    I  +  L   +
Sbjct: 295 PRYGNLTFISFVCIIGALAVWGLFFSLSQLSVAGLIYPEIGLLLPMGILFVVFLWHIR 352


>gi|325996358|gb|ADZ51763.1| integral membrane protein [Helicobacter pylori 2018]
 gi|325997946|gb|ADZ50154.1| hypothetical protein hp2017_1044 [Helicobacter pylori 2017]
          Length = 345

 Score = 56.5 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 120/352 (34%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKAENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN    H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYNGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ + F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGVYFLMVHVISTDLFLMT-----FFFPFIWAFISYLLFRKFILKRY 345


>gi|319779266|ref|YP_004130179.1| hypothetical protein TEQUI_1112 [Taylorella equigenitalis MCE9]
 gi|317109290|gb|ADU92036.1| hypothetical protein TEQUI_1112 [Taylorella equigenitalis MCE9]
          Length = 372

 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 125/365 (34%), Gaps = 8/365 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I  +  +    ++ +   + + + +   +S     +++L IS +   T 
Sbjct: 1   MILFKRSVVSEILNNAGVVFSTLLIVWLSVLLARLLAQAASGIIGPDLVLGISAFSSITA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++      +     ++   R  E+ +   TG S +  IKPVL +AI +S+ + I   +
Sbjct: 61  LPIILIVSLFISIITTVSRNYREQEMYVWFTTGVSLVDWIKPVLRIAIPVSVVIAILTIV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P     I++   +      FS + +  F   D    +   + + NN  +   I     
Sbjct: 121 TSPWAYLQIEEYRQRYAQRSDFSKIVQGQFLETDAGARVFFIEPSENNNHEFGKIFAREV 180

Query: 181 TQTHKIYYAQSG-----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           T+               + +   + I L  G  +     + +    KF S T+     NS
Sbjct: 181 TEEWISILNADYGDFKTNFETGERYIELGSGTRYDIRIGTPEFRASKFSSVTMNINQKNS 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            T   +   + L  +                   S+   RL+  L  +   L+ I     
Sbjct: 241 YT-EEQIRTRALEKIKARPFTQLIKDNNSRSD--SQILWRLSLPLAALNLALLGIPLGSV 297

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              + +   I    +   +   +       +   +   +   +L   LF   ++FL   K
Sbjct: 298 NPRMGKSADIFMAALVGMLYMNLLNVMRGWVAAEQIGLWTGFVLVNGLFSALAVFLFWYK 357

Query: 356 KKYTK 360
            +  K
Sbjct: 358 LRIRK 362


>gi|29347827|ref|NP_811330.1| hypothetical protein BT_2417 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339729|gb|AAO77524.1| putative permease [Bacteroides thetaiotaomicron VPI-5482]
          Length = 616

 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 75/195 (38%), Gaps = 6/195 (3%)

Query: 12  IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAM 71
              +F +       I  +  + + ++ +      ++++ +   Y   T++P+  P    +
Sbjct: 3   FIGTFFICLF----IFMMQFLWRYVDELVGKGLDMSVIAQFFFYSALTLVPISLPLAILL 58

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
            +     +     ELL +   G S + +++P+ F    L    F  +N++ P  ++ +  
Sbjct: 59  ASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVAVSFYFQNVVGPIAQTKLYT 118

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ--THKIYYA 189
           L    +       + E +F+    D  +KI+K N    +    ++ +         I YA
Sbjct: 119 LIISMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMMYDVLIYNLKDGFENAHIIYA 178

Query: 190 QSGSIDLDRQAIILN 204
            SG +++      L 
Sbjct: 179 DSGRMEMTADKQHLW 193



 Score = 41.5 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
           NLS  +N            +  +  E+HK++T  L  ++F  I    A    ++R+    
Sbjct: 331 NLSSDINFKSYTMGSHDYSMRKHEIEWHKKITISLSCLLFFFIG---APLGGIIRKGGLG 387

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
            P+ +S+ + F +++      +K+ ++  ++  + ++
Sbjct: 388 MPVIVSVMV-FIIYYIIDNTGYKMARDGRWVVWMGVW 423


>gi|188996313|ref|YP_001930564.1| permease YjgP/YjgQ family protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931380|gb|ACD66010.1| permease YjgP/YjgQ family protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 336

 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 115/353 (32%), Gaps = 23/353 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+++   ++F++       I    Q+L   +     + ++    K+   +  + 
Sbjct: 1   MKILDKYLIKLFFKNFILLIGLFSLIITSSQLLHLPSFA--YSMNIIDFSKLLFLIDISF 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +     F F +    V  S+    E+  + + G S+  L+KPV  + ++  I  F+   +
Sbjct: 59  IKYQLLFAFFISWLLVGISLRDKNEIYAVYSAGISKKQLLKPVFIMTVIFVIIAFVFSTV 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P       +       +     +    F +++D++ + + K       +     +   
Sbjct: 119 IVPSANRERYKFLTYKVKSYILENVSPKNFSKINDNVSVYVEKK------EKNTFYNILI 172

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                 Y   +         +IL DG +   S  S D    +  +++L        ++  
Sbjct: 173 YNASNGYLITAKEGMFISNNLILKDGYIQLPSEKSFDTIKYEKYTFSLDVSYIKEISMQD 232

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                          +      E      S    R     F + F  +  +         
Sbjct: 233 -----------FRTKDLLKLAVEEDSKVLSILADRFY---FVIPFMFLGFIGFLSGINTY 278

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +  K   +  ++S+S G      Y +  IE+ P    +  + L  I  +   +
Sbjct: 279 RS-KETLLTFAVSLSIGYMVLNYYFLKIIEKMPALFFVYPILLIVIFYLVYKL 330


>gi|317011287|gb|ADU85034.1| hypothetical protein HPSA_05295 [Helicobacter pylori SouthAfrica7]
          Length = 345

 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 119/352 (33%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S   + K  + L+IL+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKKMAKAFVPLSILVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKAENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN    H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNKNGVFELNLYSGHAYFTQGDKMRKIDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ I F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGIYFLMVHVISTDLFLMT-----FFFPFIWAFASYLLFRKFILKRY 345


>gi|217034468|ref|ZP_03439880.1| hypothetical protein HP9810_890g13 [Helicobacter pylori 98-10]
 gi|216943070|gb|EEC22547.1| hypothetical protein HP9810_890g13 [Helicobacter pylori 98-10]
 gi|308062367|gb|ADO04255.1| hypothetical protein HPCU_05530 [Helicobacter pylori Cuz20]
 gi|317178605|dbj|BAJ56393.1| hypothetical protein HPF30_0296 [Helicobacter pylori F30]
 gi|332673892|gb|AEE70709.1| conserved hypothetical protein [Helicobacter pylori 83]
          Length = 345

 Score = 56.2 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 119/352 (33%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S   + K  + L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKAENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN    H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ + F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGVYFLMVHVISTDLFLMT-----FFFPFIWAFVSYLLFRKFILKRY 345


>gi|108563456|ref|YP_627772.1| hypothetical protein HPAG1_1031 [Helicobacter pylori HPAG1]
 gi|107837229|gb|ABF85098.1| conserved hypothetical integral membrane protein [Helicobacter
           pylori HPAG1]
          Length = 345

 Score = 56.2 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 120/352 (34%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKAENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN    H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ + F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGVYFLMVHVISTDLFLMT-----FFFPFIWAFGSYLLFRKFILKRY 345


>gi|308184829|ref|YP_003928962.1| hypothetical protein HPSJM_05385 [Helicobacter pylori SJM180]
 gi|308060749|gb|ADO02645.1| hypothetical protein HPSJM_05385 [Helicobacter pylori SJM180]
          Length = 345

 Score = 56.2 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 121/352 (34%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKAENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN  + H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ I F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGIYFLMVHVISTDLFLMT-----FFFPFIWAFISYLLFRKFILKRY 345


>gi|261839824|gb|ACX99589.1| hypothetical protein HPKB_1021 [Helicobacter pylori 52]
 gi|315586981|gb|ADU41362.1| conserved hypothetical protein [Helicobacter pylori 35A]
 gi|317182344|dbj|BAJ60128.1| hypothetical protein HPF57_1054 [Helicobacter pylori F57]
          Length = 345

 Score = 56.2 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 120/352 (34%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKAENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN    H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ + F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGVYFLMVHVISTDLFLMT-----FFFPFIWAFVSYLLFRKFILKRY 345


>gi|308183196|ref|YP_003927323.1| hypothetical protein HPPC_05300 [Helicobacter pylori PeCan4]
 gi|308065381|gb|ADO07273.1| hypothetical protein HPPC_05300 [Helicobacter pylori PeCan4]
          Length = 345

 Score = 56.2 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 120/352 (34%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S   + K  + L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           ST      + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 STYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKAENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN    H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYNGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ + F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGVYFLMVHVISTDLFLMT-----FFFPFIWAFGSYLLFRKFILKRY 345


>gi|294645356|ref|ZP_06723067.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
 gi|292639294|gb|EFF57601.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
          Length = 616

 Score = 56.2 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 76/195 (38%), Gaps = 6/195 (3%)

Query: 12  IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAM 71
              +F +       I  +  + + ++ +      ++++ +   Y   T++P+  P    +
Sbjct: 3   FIGTFFICLF----IFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLVPVSLPLAVLL 58

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
            +     +     ELL +   G S + +++P+ F    L    F  +N++ P  ++ +  
Sbjct: 59  ASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQAKLGT 118

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTH--KIYYA 189
           L    +       + E +F+    D  +K++K N    +    ++ S        +I YA
Sbjct: 119 LILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYSMKDGFEKARIIYA 178

Query: 190 QSGSIDLDRQAIILN 204
            SG +++      L 
Sbjct: 179 DSGRLEMTADKQHLW 193



 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 46/129 (35%), Gaps = 4/129 (3%)

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                        +  +N++  L             +  +++E+HK++T  L  ++F  I
Sbjct: 314 SLTQKQKVISSAVSRAENVANDLGFKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFI 373

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCIS 347
               A    ++R+     P+ +S+ +    +   +          + + + ++     ++
Sbjct: 374 G---APLGGIIRKGGLGMPVIVSVLVFIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLA 430

Query: 348 SIFLLMIKK 356
            + + +  K
Sbjct: 431 PLGIFLTYK 439


>gi|260174364|ref|ZP_05760776.1| hypothetical protein BacD2_21081 [Bacteroides sp. D2]
          Length = 616

 Score = 56.2 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 75/195 (38%), Gaps = 6/195 (3%)

Query: 12  IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAM 71
              +F +       I  +  + + ++ +      ++++ +   Y   T++P+  P    +
Sbjct: 3   FIGTFFICLF----IFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLVPVSLPLAVLL 58

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
            +     +     ELL +   G S + +++P+ F    L    F  +N++ P  ++ +  
Sbjct: 59  ASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQAKLGT 118

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ--THKIYYA 189
           L    +       + E +F+    D  +K++K N    +    ++ +         I YA
Sbjct: 119 LILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYNMKDGFENAHIIYA 178

Query: 190 QSGSIDLDRQAIILN 204
            SG +++      L 
Sbjct: 179 DSGRLEMTADKQHLW 193



 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 46/129 (35%), Gaps = 4/129 (3%)

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                        +  +N++  L             +  +++E+HK++T  L  ++F  I
Sbjct: 314 SLTQKQKVLSSAVSRAENVANDLGFKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFI 373

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCIS 347
               A    ++R+     P+ +S+ +    +   +          + + + ++     ++
Sbjct: 374 G---APLGGIIRKGGLGMPVIVSVLVFIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLA 430

Query: 348 SIFLLMIKK 356
            + + +  K
Sbjct: 431 PLGVFLTYK 439


>gi|90403464|dbj|BAE91930.1| hypothetical transmembrane protein [Brevundimonas diminuta]
          Length = 81

 Score = 56.2 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 36/77 (46%)

Query: 1  MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
          M   + Y+ R IG   + +   +  I  + Q L ++ ++    +S+ +++K++   +P +
Sbjct: 1  MTLIQRYLFRQIGLPIVAAVAALAGIGLLSQSLDQLEVIVERGQSVWVMVKLTLLALPQL 60

Query: 61 LPMVTPFCFAMETTNVL 77
          + ++ P    +     L
Sbjct: 61 IAVILPIGLFVGALIAL 77


>gi|145629199|ref|ZP_01784998.1| predicted permease [Haemophilus influenzae 22.1-21]
 gi|144978702|gb|EDJ88425.1| predicted permease [Haemophilus influenzae 22.1-21]
          Length = 270

 Score = 56.2 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 87/261 (33%), Gaps = 19/261 (7%)

Query: 99  LIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY 158
           ++K  L +++L +     +   + P        +   A+   T   L    F   +++  
Sbjct: 1   MVKVALIMSLLTAGIAAYNALWLSPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNV 60

Query: 159 IKISKYNPNNTLQGIFIVDSRDTQ--THKIYYAQSGSI---DLDRQAIILNDGEVHRKSP 213
           +       +N ++ +++      +     +  A+ G +       Q + L + +    + 
Sbjct: 61  VLFIDKIKDNQIRNVYLFQMTPQKQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTS 120

Query: 214 ISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFH 273
              D  I  F  Y       ++     +  +  LS L++ + ++           ++E H
Sbjct: 121 ALPDFRITHFDEYHAYLGYQSAENTNDEVAELTLSQLIDLDSSSA----------KAELH 170

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN- 332
            R+T  L   +  LI++       +  ++ +   I  +L +    F   S          
Sbjct: 171 WRITLILAVPLMALIAVPL---SRVNPRQGRFAKILPALLLYLIYFLLQSSFKSAGSAGK 227

Query: 333 PYYIPILYLFLFCISSIFLLM 353
                ++ L       + +++
Sbjct: 228 LEAELLMPLVNIGFFLLAVVL 248


>gi|297380268|gb|ADI35155.1| Hypothetical protein HPV225_1109 [Helicobacter pylori v225d]
 gi|308063875|gb|ADO05762.1| hypothetical protein HPSAT_05215 [Helicobacter pylori Sat464]
          Length = 345

 Score = 55.8 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 119/352 (33%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S   + K  + L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKAENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN    H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ + F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGVYFLMVHVISTDLFLMT-----FFFPFIWAFISYLLFRKFILKRY 345


>gi|213855151|ref|ZP_03383391.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 206

 Score = 55.8 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 55/159 (34%), Gaps = 14/159 (8%)

Query: 193 SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLN 252
            +    Q + LN G     + + +D  I  F++Y         +      +  ++  L N
Sbjct: 37  QLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWN 96

Query: 253 PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISL 312
            + +            R+E H R+T      +  L+         +  ++ ++  +  ++
Sbjct: 97  TDND----------RARAELHWRITLVFTVFMMALM---VVPLSVVNPRQGRVLSMLPAM 143

Query: 313 SISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            +    F   + I     +     P+++++   +  + L
Sbjct: 144 LLYLLFFLIQTSIKSNGGK-GKLDPVIWMWAVNLIYLAL 181


>gi|188994506|ref|YP_001928758.1| hypothetical protein PGN_0642 [Porphyromonas gingivalis ATCC 33277]
 gi|188594186|dbj|BAG33161.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 651

 Score = 55.8 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 97/259 (37%), Gaps = 11/259 (4%)

Query: 1   MKSF---ELYILRCIGRSFL----MSCLFIVFIAWVIQILQRINLVSSSTESLNILLKIS 53
           MK      LY+   + ++FL    M+     F+  +  + + ++ +     S  IL K+ 
Sbjct: 1   MKKLPVKRLYLF--MLQTFLPLLLMTFAICWFVVLMQFLWKYVDDMVGKGLSAIILSKML 58

Query: 54  GYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113
            Y   T++PM  P    + +     ++    ELL + + G     ++KP+ F  + ++  
Sbjct: 59  FYAAMTLVPMALPLGVLLASLMTFGNLGERLELLAMKSAGVPLYRIMKPLFFSVVAIACG 118

Query: 114 LFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
           LFI +N +  + +     +   A+ A     + E  F+       + ++K +    +   
Sbjct: 119 LFIFQNDLMIQSQVKFYTILFSARRATPELEIPEGSFYNGIHGYNLFVAKKDRRTGMLHD 178

Query: 174 FIVDSRDTQT--HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
            ++          +I  A SG + +D     L       ++  +      +  + T    
Sbjct: 179 MMIYDHSQGFADARIIVADSGKLKMDEGKTFLTLMLHSGETFQNLRSQQTESNAPTPYMR 238

Query: 232 SANSSTIVLKANDQNLSFL 250
               +  ++   D N S +
Sbjct: 239 ERFRTKEIVIPFDANFSLM 257



 Score = 45.0 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 5/125 (4%)

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
             + ++++   D  +   +    +    R   +   R E+H + T  +  +IF  I    
Sbjct: 350 LEARSVMINRFDTYIGECMIMKESTAFERDRRISHMR-EWHTKFTYPVACLIFFFIG--- 405

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFL 351
           A   A++R+     PI  S+      +   ++ +   +   +     ++L  F +     
Sbjct: 406 APLGAIIRKGGLGTPIVASVLFFVLYYMVDTFGVKMAKTEEWPVWLGMWLSTFVLVPFGF 465

Query: 352 LMIKK 356
            +  K
Sbjct: 466 FLTYK 470


>gi|71275899|ref|ZP_00652182.1| permease YjgP/YjgQ [Xylella fastidiosa Dixon]
 gi|71899263|ref|ZP_00681425.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
 gi|71163276|gb|EAO12995.1| permease YjgP/YjgQ [Xylella fastidiosa Dixon]
 gi|71730996|gb|EAO33065.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
          Length = 408

 Score = 55.8 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 93/256 (36%), Gaps = 5/256 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SF+ + + ++ +     ++  +  ++       +LL   G    + 
Sbjct: 48  MPKLDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIADGHFPAKLLLSQLGLRFISY 107

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I + G     ++  +L L + + + + +    
Sbjct: 108 LPLLLPLALMLGLLLSLGRLYRDSEMAVITSIGVGPGRMLPSILGLVLPVVVLIGVCSLW 167

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T   L  +A  ++  + LE   F  + D   + +S  + + T      + S+ 
Sbjct: 168 LAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVYLSSLSSDGTKLNAVFMQSQK 227

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESANS 235
                +  A+ G +       + + L DG+           +  ++ F          + 
Sbjct: 228 DDRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPADGAALNYRVLTFARNDALLPELSV 287

Query: 236 STIVLKANDQNLSFLL 251
                  +      L+
Sbjct: 288 VYDSNHPDILPTFNLI 303


>gi|317180825|dbj|BAJ58611.1| hypothetical protein HPF32_1029 [Helicobacter pylori F32]
          Length = 345

 Score = 55.8 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 120/352 (34%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKAENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN    H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ + F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGVYFLMVHVISTDLFLMT-----FFFPFIWAFISYLLFRKFILKRY 345


>gi|297624271|ref|YP_003705705.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
 gi|297165451|gb|ADI15162.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
          Length = 359

 Score = 55.8 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/347 (11%), Positives = 108/347 (31%), Gaps = 8/347 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQR--INLVSSSTESLNILLKISGYLIPT 59
           + F LY++R I   +      ++ +     +L    +    +      ++ +   Y IP+
Sbjct: 3   RRFSLYLVREILPLYAAGLTALLILLLGAFLLLEGVLADAVARGVGPALVARFLLYSIPS 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              M  P          +T +++++E+      G S    + P+L L +L+S   FI+  
Sbjct: 63  AAAMGLPLALLFAALLGITRLSQDSEIKAGLLLGLSPRQFLTPILLLGLLVSTVSFINNE 122

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           ++ P      ++      +    + +E   FF       + +    P   ++ + ++   
Sbjct: 123 LLAPWSYRRAQEALKDILVQSPETLIEAGSFFTDALGRSVYLGSIAPGGVVRDVTVIQPG 182

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            T            +  +   +   +G    +    + +         L     ++S+  
Sbjct: 183 GTAGPSEVIRAESGVLDEAAGVWRLNGIRMLRYRDGRVVLDAPADEALLPVRGLSASS-- 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               +     L           P+      +  H++  +      F L ++         
Sbjct: 241 STPPELTRLPLRELFARLRGTNPQDAPAEWTALHRKFAEPSAAFAFALFALSIGLYS--- 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
             R+      +S+     +++    + + +         +  +L   
Sbjct: 298 -FRRNFGLGLVSVLFLTFIYYATWSVSNLLGAQGTLPAAVAGWLPFA 343


>gi|213162832|ref|ZP_03348542.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 219

 Score = 55.8 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 55/159 (34%), Gaps = 14/159 (8%)

Query: 193 SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLN 252
            +    Q + LN G     + + +D  I  F++Y         +      +  ++  L N
Sbjct: 50  QLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWN 109

Query: 253 PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISL 312
            + +            R+E H R+T      +  L+         +  ++ ++  +  ++
Sbjct: 110 TDND----------RARAELHWRITLVFTVFMMALM---VVPLSVVNPRQGRVLSMLPAM 156

Query: 313 SISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            +    F   + I     +     P+++++   +  + L
Sbjct: 157 LLYLLFFLIQTSIKSNGGK-GKLDPVIWMWAVNLIYLAL 194


>gi|327405435|ref|YP_004346273.1| permease YjgP/YjgQ family protein [Fluviicola taffensis DSM 16823]
 gi|327320943|gb|AEA45435.1| permease YjgP/YjgQ family protein [Fluviicola taffensis DSM 16823]
          Length = 495

 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 81/203 (39%), Gaps = 1/203 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   ++ ++  G  F+++    + +  +      I+ +      + +++++  Y+   +
Sbjct: 1   MKKLTVFSIKSFGGPFVVTFFISMVMLIMQFTWVYIDDLMGKGLGVAVIIELMFYVSAGL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    + +   L ++  N EL  + ++G S   +++P+    I+++   F   N 
Sbjct: 61  IPLALPLAILLSSIMTLGNLAENNELTALKSSGLSLFRILRPLTQTVIVIATATFFFANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P        +    Q       L    + +  +   IKI K   +NT +GI I D  +
Sbjct: 121 VIPVANLKWHTIIYDIQETKVGMLLTPGSYTKEIEGYAIKI-KSGKDNTFKGITIHDYTN 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIIL 203
               K   A SG +        L
Sbjct: 180 PNVLKTVKADSGIVYKGDDGKYL 202



 Score = 41.9 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
             + Y+ EFH++       ++   +    A   A++R+     P+ I+  +    F  FS
Sbjct: 380 NYDLYQIEFHRKFALSGAIIVLFFVG---APLGAIIRKGGFGAPVVIAALLFMVYFVLFS 436

Query: 324 YIIHKIEQN-PYYIPILYLFLFCISS 348
              +    N     P   ++L     
Sbjct: 437 VGQNLATSNDKILSPFWGMWLPTAVL 462


>gi|210135251|ref|YP_002301690.1| integral membrane protein [Helicobacter pylori P12]
 gi|210133219|gb|ACJ08210.1| integral membrane protein [Helicobacter pylori P12]
          Length = 345

 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 121/352 (34%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKAENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN  + H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDTAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----ILVSLFPLASMFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ + F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGVYFLMVHVISTDLFLMT-----FFFPFIWAFASYLLFRKFILKRY 345


>gi|15644990|ref|NP_207160.1| hypothetical protein HP0362 [Helicobacter pylori 26695]
 gi|2313464|gb|AAD07430.1| conserved hypothetical integral membrane protein [Helicobacter
           pylori 26695]
          Length = 345

 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 119/352 (33%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S   + K    L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKVFAPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           ST      + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 STYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKTKNNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN    H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYNGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ + F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGVYFLMVHVISTDLFLMT-----FFFPFIWAFASYLLFRKFILKRY 345


>gi|188527872|ref|YP_001910559.1| hypothetical protein HPSH_05605 [Helicobacter pylori Shi470]
 gi|188144112|gb|ACD48529.1| hypothetical protein HPSH_05605 [Helicobacter pylori Shi470]
          Length = 345

 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 120/352 (34%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S   + K  + L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKAENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN    H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ + F +    S  +  +          +++ F    +F  +I K+Y
Sbjct: 299 YVLGAVGVYFLMVHVISTDLFLMT-----FFFPFIWAFVSYLLFRKIILKRY 345


>gi|317009699|gb|ADU80279.1| hypothetical protein HPIN_05385 [Helicobacter pylori India7]
          Length = 345

 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 120/352 (34%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKAENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN    H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQA----VLVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ + F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGVYFLMVHVISTDLFLMT-----FFFPFIWAFASYLLFRKFILKRY 345


>gi|187918662|ref|YP_001884228.1| hypothetical protein BH0808 [Borrelia hermsii DAH]
 gi|119861510|gb|AAX17305.1| hypothetical protein BH0808 [Borrelia hermsii DAH]
          Length = 355

 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/352 (10%), Positives = 113/352 (32%), Gaps = 1/352 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +   +  I  +FL      V +  +  +   +        S++ ++ I    +P    
Sbjct: 2   KVDKLFVNNISLTFLFMNFLFVILIVLFDLFTNLFTYLDHNLSISDIIYIYYLYLPKCFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N++ +++   E++ + + G S   +++ ++ L++ +S+ LF  +N + 
Sbjct: 62  DGLALSFLFAVSNLIGNLSMRNEIIGLFSCGISISRILRSIIMLSVFISVLLFFFDNYLV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
               +        +  +   +     +     +   I+      +     + I+  ++  
Sbjct: 122 IDTVTKRDAFLKNSIGSKGANDRNIIIKDFAREIYNIRHYDIENDIIANLMIILKDQNDN 181

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             K Y          R  +         +  + +    +      +  E      I+L +
Sbjct: 182 FKKRYDISKAEWTNSRWRLYGVREFSKVERDVIEKFHEVLDGGGIVNLEPEYIKIIMLSS 241

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              N S L++          +  E     F +    +   ++   +  V+   +  +   
Sbjct: 242 KTLNFSKLISWIGALRRENLDSSEALFDFFSRIFFSFRLILLSFTVGFVSFALKKNIFIW 301

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             ++ I  ++     +   FS++        +    L   LF I +  +  +
Sbjct: 302 SLLNSIAFAVVYVISIM-VFSFLADLGYLPIFVASSLPTILFIIINFVVYNL 352


>gi|115379865|ref|ZP_01466928.1| hypothetical protein STIAU_7243 [Stigmatella aurantiaca DW4/3-1]
 gi|115363124|gb|EAU62296.1| hypothetical protein STIAU_7243 [Stigmatella aurantiaca DW4/3-1]
          Length = 315

 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/283 (10%), Positives = 79/283 (27%), Gaps = 10/283 (3%)

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
           +  E+  +        +L  PV  +A+   + L   +  +  +    + +++ +      
Sbjct: 24  KRGEVTALRALTFGPASLYLPVGAVALAACLGLIAFDERVVAQASRRVDEITTQRFNRWG 83

Query: 142 FSY-LEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA 200
                     +    +    +   +     + + I+                 + L+   
Sbjct: 84  DWRLYYTPKQWFRRGEHVFFLRSGSAQEGFRDVAILTLTADFKLARRLDADTMVPLEGNR 143

Query: 201 IILNDGEVHRKSPISKD-ISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPN 259
             L        SP  +  +S      Y L   + +      +     L  L     +   
Sbjct: 144 WRLTGVVERSFSPDGRTAVSAAPEAEYDLGVPARSFLIRPGRPEQMRLPEL-REQISART 202

Query: 260 YRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
                   Y    + R    +  +   L+++  A +    R+      I   L I+  + 
Sbjct: 203 EVGLDSRQYELALYNRFAYPMAGLPAALVAVGLALRP--NRKGHLTVAIVEGLLIAMAM- 259

Query: 320 WGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLLMIKKKY 358
           WG   +   +       P L  +L      + +  L + ++ +
Sbjct: 260 WGLIVVSKTLVTTERMAPGLAAWLPSGVLVVVATVLWLRREGW 302


>gi|34540406|ref|NP_904885.1| hypothetical protein PG0598 [Porphyromonas gingivalis W83]
 gi|34396719|gb|AAQ65784.1| hypothetical protein PG_0598 [Porphyromonas gingivalis W83]
          Length = 651

 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 97/259 (37%), Gaps = 11/259 (4%)

Query: 1   MKSF---ELYILRCIGRSFL----MSCLFIVFIAWVIQILQRINLVSSSTESLNILLKIS 53
           MK      LY+   + ++FL    M+     F+  +  + + ++ +     S  IL K+ 
Sbjct: 1   MKKLPVKRLYLF--MLQTFLPLLLMTFAICWFVVLMQFLWKYVDDMVGKGLSAIILSKML 58

Query: 54  GYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113
            Y   T++PM  P    + +     ++    ELL + + G     ++KP+ F  + ++  
Sbjct: 59  FYAAMTLVPMALPLGVLLASLMTFGNLGERLELLAMKSAGVPLYRIMKPLFFSVVAIACG 118

Query: 114 LFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
           LFI +N +  + +     +   A+ A     + E  F+       + ++K +    +   
Sbjct: 119 LFIFQNDLMIQSQVKFYTILFSARRATPELEIPEGSFYNGIRGYNLFVAKKDRRTGMLHD 178

Query: 174 FIVDSRDTQT--HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
            ++          +I  A SG + +D     L       ++  +      +  + T    
Sbjct: 179 MMIYDHSQGFADARIIVADSGKLKMDEGKTFLTLMLHSGETFQNLRSQQTESNAPTPYMR 238

Query: 232 SANSSTIVLKANDQNLSFL 250
               +  ++   D N S +
Sbjct: 239 ERFRTKEIVIPFDANFSLM 257



 Score = 45.4 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 5/125 (4%)

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
             + ++++   D  +   +    +    R   +   R E+H + T  +  +IF  I    
Sbjct: 350 LEARSVMINRFDTYIGECMIMKESTAFERDRRISHMR-EWHTKFTYPVACLIFFFIG--- 405

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFL 351
           A   A++R+     PI  S+      +   ++ +   +   +     ++L  F +     
Sbjct: 406 APLGAIIRKGGLGTPIVASVLFFVLYYMVDTFGVKMAKTEEWPVWLGMWLSTFVLVPFGF 465

Query: 352 LMIKK 356
            +  K
Sbjct: 466 FLTYK 470


>gi|317177843|dbj|BAJ55632.1| hypothetical protein HPF16_1035 [Helicobacter pylori F16]
          Length = 345

 Score = 55.8 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 119/352 (33%), Gaps = 11/352 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S   + K  + L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  S+       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKAENNSYDNLVLFSSKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN    H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                       N        +       +   LFP+    +  +        +      
Sbjct: 243 DYLGYWEKAFGKNANKNQKRRFSQA----ILVSLFPLASVFLIPLFGIANPRFKTNWSYF 298

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            +  ++ + F +    S  +  +          +++ F    +F   I K+Y
Sbjct: 299 YVLGAVGVYFLMVHVISTDLFLMT-----FFFPFIWAFISYLLFRKFILKRY 345


>gi|208435366|ref|YP_002267032.1| hypothetical protein HPG27_1421 [Helicobacter pylori G27]
 gi|208433295|gb|ACI28166.1| hypothetical protein HPG27_1421 [Helicobacter pylori G27]
          Length = 355

 Score = 55.4 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/368 (11%), Positives = 104/368 (28%), Gaps = 23/368 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHR-------KSPISKDISIMKFKSYTLQTESANS 235
                YA++     + +  IL+D  ++         +       +  FK+          
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTTIYEMPSSFELGNNALNTTRLKTFKTLKNFRPKVLD 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +    K        LL+ +                         + P     +S++ A  
Sbjct: 233 TIYQNKPAVSITDALLSLHALVRQNADTKKVRSFL-----YVFAILPFFVPFLSVLIAYF 287

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLM 353
              + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L  
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLWY 347

Query: 354 IKKKYTKI 361
            KK   ++
Sbjct: 348 FKKLNKRL 355


>gi|189461471|ref|ZP_03010256.1| hypothetical protein BACCOP_02127 [Bacteroides coprocola DSM 17136]
 gi|189431805|gb|EDV00790.1| hypothetical protein BACCOP_02127 [Bacteroides coprocola DSM 17136]
          Length = 635

 Score = 55.4 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 78/215 (36%), Gaps = 6/215 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++++L+     F  +    +FI  +  + + ++ +      +N+L +   Y   T++
Sbjct: 5   KKLDIFVLKSFLLLFAGTFFICLFIFMMQFLWRYVDELVGKGLEINVLAQFFFYSGLTLI 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    +       +     ELL +   G   + +I+PV+   + L    F  +NII
Sbjct: 65  PLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPVVLFCVFLGGISFFFQNII 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  +  L    +       + E +F+   D   I +   +    L    ++ +   
Sbjct: 125 GPRAQKQLWTLLVSMKQKSPEVDIPEGVFYSDIDGYNIYVKHKDRKTGLLKDILIYNFSD 184

Query: 182 QTHKIYYAQSGS------IDLDRQAIILNDGEVHR 210
                +   +         D     + L +GE   
Sbjct: 185 GFENAHIIWAAEGKLELTADKQHLFLHLYNGEQFE 219



 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
           +LS   +            + ++RS++HK++T  L  +IF  I    A   A++R+    
Sbjct: 346 SLSTDWDMKSFLTKDTDNSIRSHRSDWHKKITLSLACIIFFFIG---APLGAIIRKGGLG 402

Query: 306 HPIFISLSISFGVFWGFSYI---IHKIEQNPYYIPILYLFLFCISSIFL 351
            P+ IS+ I    +   S         E N      +   +      F 
Sbjct: 403 MPVVISVLIFVIYYIIDSGATRVAKSGEMNIVLGTWMSTIVLAPLGAFF 451


>gi|254669826|emb|CBA04196.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
          Length = 182

 Score = 55.4 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 44/128 (34%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120

Query: 121 IEPKCRST 128
           + P     
Sbjct: 121 VAPTLSQK 128


>gi|34558361|ref|NP_908176.1| permease [Wolinella succinogenes DSM 1740]
 gi|34484080|emb|CAE11076.1| conserved hypothetical protein-PREDICTED PEMEASE [Wolinella
           succinogenes]
          Length = 355

 Score = 55.4 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/366 (10%), Positives = 110/366 (30%), Gaps = 16/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     ++     + F +  L +      I +L+    +     S N+++    Y     
Sbjct: 1   MSLAFRFLGALYLKYFFILLLALETFFVGIDLLKFAEEL---PPSANLVVLFVVYDALYA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +    +   + R  EL  + + G S+  +  P+L +A+L +    +    
Sbjct: 58  LNFILPIALVLAQILLFVVLLRTNELTALLSIGYSKRQITTPLLGIALLFTFGFIVLNAT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                +                   +  LF +  D        Y      +G+ +     
Sbjct: 118 PFAYAKER----VDTILDQGYVGNFKRELFVKYHDSYIYFDKIYPLLQKAEGVKVYRLEG 173

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +  +   A+      +       +++             ++  + F             
Sbjct: 174 DRVAQWIEAKEARFVDNHWRLNEAMVMTIPSELTLGGSPLEVEKVDFMEVLEGFRPRILD 233

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF-PVIFGLISIVAADK 295
           +I  +    ++   +  + +    +    +  R   +  +    F P+   L++      
Sbjct: 234 SIYERHGAVSIIDAI-ESMSLLLEQQVNSQKIRGILYSLVLFPFFAPLCMVLVAYYMPIT 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                    +    + + + +G+F+  S +      +P    ++ + L+   ++F     
Sbjct: 293 MRYGNLAIIVFAAILGVLLFWGLFFALSRLSMSGFIHPEVSLLIPMILWTALALFFW--- 349

Query: 356 KKYTKI 361
           ++  ++
Sbjct: 350 RRLARL 355


>gi|154148987|ref|YP_001406533.1| YjgP/YjgQ permease [Campylobacter hominis ATCC BAA-381]
 gi|153804996|gb|ABS52003.1| putative permease, YjgP/YjgQ family [Campylobacter hominis ATCC
           BAA-381]
          Length = 340

 Score = 55.4 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 109/363 (30%), Gaps = 28/363 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E Y+      +F      +  I  +I  LQ   + S    +L  L K+  +++P +
Sbjct: 1   MYRAEKYLFSNFLSTFASLFSTLFLIMSIIFFLQIARITSFVEINLYELTKLYLFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +     L  +++  E +++   G S   + +  LFLA ++S+ + +    
Sbjct: 61  LIFTIPISFFVALAMSLFRLSKENETIVLFTLGYSSEKIARFFLFLAFIVSVSMLLISLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI---VD 177
           + P   +      +  +++   +        +  D L     +   N       +     
Sbjct: 121 MMPLAENLKDNFVSYKKISANLNIKSSEFGQKFSDWLVFIDDQKETNTGSIYENLILYHP 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
              T   +I  A SG I  +     L        +   K   I  F    ++T   +   
Sbjct: 181 KNKTSDERIILASSGEIANENSNFSLKLKNGKAYTNDEKKWHISYFDELIIRTVQKDKIK 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                                    +  +    +    +   LFP+     ++       
Sbjct: 241 ENGGILGYW----------------KNEKNASKQLSIYVLVSLFPLASIYFAVSFGIVTY 284

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              +      IF  L   F +   F+            +  + L  F    +  +  ++K
Sbjct: 285 RYEKGFIYIGIFGVLFCYFAMIMIFAK---------QPLLAIPLTFFIFLILSYIFYRQK 335

Query: 358 YTK 360
             +
Sbjct: 336 IAR 338


>gi|218508596|ref|ZP_03506474.1| putative permease protein [Rhizobium etli Brasil 5]
          Length = 239

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 53/161 (32%), Gaps = 6/161 (3%)

Query: 194 IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK---ANDQNLSFL 250
           +  D     L DG       + +    +  +  ++Q  +      V +   A +    F 
Sbjct: 71  LRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQERLTAPETIGFFD 130

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           L+             +   ++F+  L+Q L  V   LI+   +      R  +    I  
Sbjct: 131 LSNRIAAAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSL--KFSRFNQSRSVILG 188

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            +   F ++   + ++     +    P +  ++  + ++ L
Sbjct: 189 GILSGFMLY-VITVLVKAFGSSGVVPPFVATWIPVVVALAL 228


>gi|126664027|ref|ZP_01735021.1| hypothetical protein FBBAL38_12830 [Flavobacteria bacterium BAL38]
 gi|126623976|gb|EAZ94670.1| hypothetical protein FBBAL38_12830 [Flavobacteria bacterium BAL38]
          Length = 474

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 54/171 (31%)

Query: 13  GRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAME 72
             +F    + + FI  +  I   I  ++     L  + K   +  PT++PMV P    + 
Sbjct: 1   MITFTTVFVILFFIFVLQGIWLFIAELAGKDLDLFTIFKFLTFYAPTIVPMVLPLSVLLA 60

Query: 73  TTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQL 132
                 S   N E   + ++G S    +K +     +L++  F   N + P  +     L
Sbjct: 61  AIMTFGSFAENYEFAAMKSSGISLQRAMKMLTITIGILALVSFFFANNVIPDAQFRFINL 120

Query: 133 SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                       + E  F  +         K   N        +  ++   
Sbjct: 121 RKDIVQQKPAMAIVEGQFNTIGTSNIKVDKKTGDNGEFLEGVTMHVKNNNM 171



 Score = 45.0 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/246 (8%), Positives = 68/246 (27%), Gaps = 4/246 (1%)

Query: 112 IFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ 171
              +  E+I   K     +    K+        ++     + + D     S+        
Sbjct: 200 YDGYYYEDIHPKKYEERKRLPFTKSSFKKYVINIDLTKLNQSNIDDGNVTSEKMLTIPEL 259

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
              I   +      +       +  +                 +   +  K         
Sbjct: 260 SFTIDTLQKNYNKDVKSYAENIVTRNDNIFQKRQINSTTVQAKTIKKTAPKNIESLFNPT 319

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                  + K+N  +  F +  +  +   + + +  +    H++       ++   I   
Sbjct: 320 ELKQILEMAKSNATSSEFSIQSSKTDLEIKAKNIGYHWMAIHEKFVIAYACLLMFFIG-- 377

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIF 350
            A   A++R+     PI  ++ I     +  ++     E++     I  ++    ++   
Sbjct: 378 -APLGAIIRKGGLGLPIVFAMLIFIAFHFINTFGRKLAEESTITPFIGAWMSSIIMTPFA 436

Query: 351 LLMIKK 356
           +L+  +
Sbjct: 437 ILLTYR 442


>gi|15612456|ref|NP_224109.1| hypothetical protein jhp1391 [Helicobacter pylori J99]
 gi|4156011|gb|AAD06972.1| putative [Helicobacter pylori J99]
          Length = 355

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/367 (11%), Positives = 106/367 (28%), Gaps = 21/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVH------RKSPISKDISIMKFKSYTLQTESANSS 236
                YA++     + +  IL+D  ++           + + + ++              
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTHLETFKTLKNFRPKVLD 232

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           TI       +++  L           +  +             + P     +S++ A   
Sbjct: 233 TIYQNKPAVSITDALLSLHALVRQNADTKKVRSF----LYVFAILPFFVPFLSVLIAYFS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMI 354
             + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L   
Sbjct: 289 PSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLWYF 348

Query: 355 KKKYTKI 361
           KK   ++
Sbjct: 349 KKLNKRL 355


>gi|126663513|ref|ZP_01734510.1| hypothetical protein FBBAL38_09194 [Flavobacteria bacterium BAL38]
 gi|126624461|gb|EAZ95152.1| hypothetical protein FBBAL38_09194 [Flavobacteria bacterium BAL38]
          Length = 132

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 6/135 (4%)

Query: 226 YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
            +   E  + + +V  A    +  L +            + TY   F+K+ +  +   I 
Sbjct: 1   MSYNFEPDDLTPVVYVAETMTIGQLNSFINKERARGNGNINTYLVVFYKKFSLPISAFIL 60

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLF 342
            +I++      ++ R+      + I + I+F   +    F  +  K    P+        
Sbjct: 61  TIIAVAV---SSMKRRGGMGINLAIGIVIAFTFIFFDKVFGTLAEKSSIPPFLAVWFPNI 117

Query: 343 LFCISSIFLLMIKKK 357
           +F I + +LL   K+
Sbjct: 118 VFGILAAYLLRNAKR 132


>gi|319900104|ref|YP_004159832.1| permease YjgP/YjgQ family protein [Bacteroides helcogenes P 36-108]
 gi|319415135|gb|ADV42246.1| permease YjgP/YjgQ family protein [Bacteroides helcogenes P 36-108]
          Length = 633

 Score = 54.6 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 82/205 (40%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++++L+     F+ +    +FI  +  + + ++ +      + +L +   Y   T++
Sbjct: 5   KKLDIFVLKSFCMLFMGTFFICLFIFMMQFLWRYVDELIGKGLEMTVLAQFFFYSALTLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P    +       +     ELL +   G S + +++ ++    L+S   F  +N+I
Sbjct: 65  PVSLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRSLIVFIALVSCVSFYFQNVI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ ++ +  L    +       + E +F+   +   + +   +    +    ++ + + 
Sbjct: 125 GPQAQTKLWTLLLSMKQKSPEVDIPEGVFYDEIEGYNLYVKHKDRKTGMLYDVLIYNFEK 184

Query: 182 Q--THKIYYAQSGSIDLDRQAIILN 204
                +I  A SG +++      L 
Sbjct: 185 GFENAQIIKADSGKLEMTADKQHLY 209


>gi|317181181|dbj|BAJ58967.1| hypothetical protein HPF32_1385 [Helicobacter pylori F32]
          Length = 355

 Score = 54.6 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/367 (11%), Positives = 105/367 (28%), Gaps = 21/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK------DISIMKFKSYTLQTESANSS 236
                YA++     + +  IL+D  ++      +      + + +K              
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTTIYEMPLKFELGANALNTTHLKTFKTLKNFRPKVLD 232

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           TI       +++  L           +  +             + P     +S++ A   
Sbjct: 233 TIYQNKPAVSITDALLSLHALVRQNADTKKVRSF----LYVFAILPFFVPFLSVLIAYFS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMI 354
             + + + +  + +   I   V WG  + + K   +   IP + +        ++ L   
Sbjct: 289 PSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFLVFLALSLWYF 348

Query: 355 KKKYTKI 361
           KK   ++
Sbjct: 349 KKLNKRL 355


>gi|332674268|gb|AEE71085.1| conserved hypothetical protein [Helicobacter pylori 83]
          Length = 355

 Score = 54.6 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 110/367 (29%), Gaps = 21/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVH------RKSPISKDISIMKFKSYTLQTESANSS 236
                YA++     + +  IL+D  ++           + + + +K              
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGNNALNTTHLKTFKTLKNFRPKVLD 232

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           TI       +++  L  + +    +    +  RS         + P     +S++ A   
Sbjct: 233 TIYQNKPAVSITDAL-LSLHALMRQNADTKKVRS---FLYVFAILPFFVPFLSVLIAYFS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMI 354
             + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L   
Sbjct: 289 PSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYF 348

Query: 355 KKKYTKI 361
           KK   ++
Sbjct: 349 KKLNKRL 355


>gi|120436531|ref|YP_862217.1| permease [Gramella forsetii KT0803]
 gi|117578681|emb|CAL67150.1| permease [Gramella forsetii KT0803]
          Length = 459

 Score = 54.6 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 81/238 (34%), Gaps = 13/238 (5%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           +FI  +  I   I  ++       ++LK   Y  P ++P+V P    + +     S   N
Sbjct: 1   MFIFVLQTIWLYIGELAGKDLDAEVILKFLLYFSPKLVPLVLPLTILLTSIMTFGSFAEN 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   + ++G S    ++ +    + +S   F   N + P        L           
Sbjct: 61  YEFAAMKSSGISLGRAMRSLTVFIVFISFVAFFFANNVIPAAEFKSINLRKNIAQLKPAM 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT--QTHKIYYAQSGSI----DLD 197
            + E +F  +         K   N+      I+  +        +  A+ G +    + D
Sbjct: 121 AISEGIFNDIGTFNIKVEDKTGENDQYLTDVIIHQKKQTGGNTTVIKAKEGELVGSTESD 180

Query: 198 RQAIILNDGEVHR-------KSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS 248
             ++IL +G  +            +K  +   F  Y +  + ++ + + L+    + +
Sbjct: 181 VLSLILKEGNYYDEIKPSDYDKRKNKPFTKSYFDEYVINIDLSDFNNVNLEDESYSST 238



 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/104 (7%), Positives = 36/104 (34%), Gaps = 6/104 (5%)

Query: 255 PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI 314
                   + +  +    H++    +  ++   +    A   A++R+     PI +++ +
Sbjct: 326 KQEFKRNVQQVNKFEIALHEKYALSIACIVLFFVG---APLGAIIRKGGIGLPIVVAILL 382

Query: 315 SFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIKK 356
                +   +  +   ++      +  +L  F +  + + +  +
Sbjct: 383 FLTYHFIGIFAKNSA-EDGSVPAFVATWLSTFIMLPLGIYLTYR 425


>gi|257459022|ref|ZP_05624141.1| permease YjgP/YjgQ [Campylobacter gracilis RM3268]
 gi|257443407|gb|EEV18531.1| permease YjgP/YjgQ [Campylobacter gracilis RM3268]
          Length = 348

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 96/357 (26%), Gaps = 10/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK +  Y      + F +  + +      I +L  +    S   S N  L          
Sbjct: 1   MKLYVKYAALSYLKYFFILLIALECFYVGIDVLTNLKDFPS---SANTALLYIALTAAVA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P         +  +M R+ EL+     G S+  LI P   +A+ ++       + 
Sbjct: 58  LSYTLPLSLIFALILMGFNMIRSNELVSFYALGVSKNALIIPPFLIALAITASFIALNST 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    K L+  +          E  +  +        +     N         S  
Sbjct: 118 PFAYALKFQKNLTDLSPTGGDMFLKFEGKYIYIKALNGKNANDITIFNIGDNSVASRSHA 177

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           +                             K   S   S +  +S  L+    +S   V 
Sbjct: 178 SSGEYAGKIWHLRDVNTTTLPT------QLKLGGSGLKSKLSAQSEALKGFDPSSIASVY 231

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRALV 299
             ++         +    +++   + T ++  +  +   LF  +  L+            
Sbjct: 232 DTSNVYSIRDALRSIRTFSHQGVNISTIKASLYNMIFFPLFAPLAVLVLYYYLPVTGRFF 291

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                    FI+   ++GV +            P +  I+ +      + FL+   +
Sbjct: 292 NLALLSFGFFIATLCAWGVLFVLIRFSLNGVIIPEFGIIVPIIALLGFAAFLVFKHR 348


>gi|317182703|dbj|BAJ60487.1| hypothetical protein HPF57_1413 [Helicobacter pylori F57]
          Length = 355

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/368 (11%), Positives = 104/368 (28%), Gaps = 23/368 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTTVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHR-------KSPISKDISIMKFKSYTLQTESANS 235
                YA++     + +  IL+D  ++         +       +  FK+          
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTIIYEMPLSFELGNNALNTTHLKTFKTLKNFRPKVLD 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +    K        LL+ +                         + P     +S++ A  
Sbjct: 233 TIYQNKPAVSITDALLSLHALVRQNADTKKVRSFL-----YVFAILPFFVPFLSVLIAYF 287

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLM 353
              + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L  
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLWY 347

Query: 354 IKKKYTKI 361
            KK   ++
Sbjct: 348 FKKLNKRL 355


>gi|254780008|ref|YP_003058115.1| putative permease; putative membrane protein [Helicobacter pylori
           B38]
 gi|254001921|emb|CAX30174.1| Putative permease; putative membrane protein [Helicobacter pylori
           B38]
          Length = 355

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 110/367 (29%), Gaps = 21/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       S  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYISFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVH------RKSPISKDISIMKFKSYTLQTESANSS 236
                YA++     + +  IL+D  ++           + + + ++              
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTRLETFKTLKNFRPKVLD 232

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           TI       +++  L  + +    +    +  RS         + P     +S++ A   
Sbjct: 233 TIYQNKPAVSITDAL-LSLHALMRQNADTKKVRS---FLYVFAILPFFVPFLSVLIAYFS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMI 354
             + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L   
Sbjct: 289 PSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLWYF 348

Query: 355 KKKYTKI 361
           KK   ++
Sbjct: 349 KKLNKRL 355


>gi|308185268|ref|YP_003929401.1| hypothetical protein HPSJM_07640 [Helicobacter pylori SJM180]
 gi|308061188|gb|ADO03084.1| hypothetical protein HPSJM_07640 [Helicobacter pylori SJM180]
          Length = 355

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/367 (11%), Positives = 105/367 (28%), Gaps = 21/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKCQILNPIFLISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVH------RKSPISKDISIMKFKSYTLQTESANSS 236
                YA++     + +  IL+D  ++           +   + +K              
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLD 232

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           TI       +++  L           +  +             + P     +S++ A   
Sbjct: 233 TIYQNKPAVSITDALLSLHALVRQNADTKKVRSF----LYVFAILPFFVPFLSVLIAYFS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMI 354
             + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L   
Sbjct: 289 PSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLWYF 348

Query: 355 KKKYTKI 361
           KK   ++
Sbjct: 349 KKLNKRL 355


>gi|216263568|ref|ZP_03435563.1| putative permease, YjgP/YjgQ family protein [Borrelia afzelii
           ACA-1]
 gi|215980412|gb|EEC21233.1| putative permease, YjgP/YjgQ family protein [Borrelia afzelii
           ACA-1]
          Length = 333

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/334 (11%), Positives = 100/334 (29%), Gaps = 1/334 (0%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           + +  +  +   +        SL  +  I    +P          F    +N++ +++  
Sbjct: 1   MILIILGDLFVNLLNFLEKNISLKDIFYIYYLYLPKAFSDGVALSFLFAISNLIGNLSMR 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E++ + + G     +++P++ +++ +S+ LF  +N +     +    L   +       
Sbjct: 61  NEIIGLFSCGVPLTRILRPIILISVFISVVLFFFDNYLVIDTVAKRDLLIKNSIGNNGSI 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIIL 203
                +     +   IK    + N     + I+     +    Y         ++  +  
Sbjct: 121 DKTIIIRDLAREIYNIKSYDIDENAFSNLMIIIKDSKDEFQTRYDINKAEWKDNKWKLYG 180

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPE 263
               V     I ++   +   +  ++ E     T++L +   N + L+N   +       
Sbjct: 181 IREFVKVGRKIKENAYDVLDGTGIIKLEPDYIRTVMLSSKALNFTKLIN-WISFLKSEHL 239

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
                  +   R+      ++        A           +        +       FS
Sbjct: 240 NYSDALFDLLNRIFFSFRLMLLSFTVGFIALALKKNIFILSLLNSIAFAVVYVISIVIFS 299

Query: 324 YIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           ++      N Y         F I +  +  I +K
Sbjct: 300 FLADLGYLNIYVASSFTTIFFLIINFLVYRIVRK 333


>gi|295134703|ref|YP_003585379.1| permease [Zunongwangia profunda SM-A87]
 gi|294982718|gb|ADF53183.1| permease [Zunongwangia profunda SM-A87]
          Length = 407

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 47/147 (31%), Gaps = 9/147 (6%)

Query: 215 SKDISIMKFKSYTLQTESANSSTIVLKANDQNLS---FLLNPNPNNPNYRPELLETYRSE 271
            +      FK   L   ++N S  ++    +  +     L+            L  Y   
Sbjct: 233 EESDKYKSFKHSILDNYNSNQSQRIVDDAIRTTNAAISHLSIKKQEFKQSSRRLNKYEIA 292

Query: 272 FHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
            H++    +  ++   +    A   A++R+     P+ I++ I F  +           +
Sbjct: 293 LHEKYVLAVACIVLFFVG---APLGAIIRKGGMGLPMVIAI-IIFLSYHFIGIFAKNSAE 348

Query: 332 NPYYIPILYLFL--FCISSIFLLMIKK 356
           +    P +  +L    +  + +    +
Sbjct: 349 DGSISPFIATWLSTLIMLPLGIYFTYR 375


>gi|108563840|ref|YP_628156.1| hypothetical protein HPAG1_1415 [Helicobacter pylori HPAG1]
 gi|107837613|gb|ABF85482.1| hypothetical protein HPAG1_1415 [Helicobacter pylori HPAG1]
          Length = 355

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/368 (11%), Positives = 104/368 (28%), Gaps = 23/368 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       S  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYISFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHR-------KSPISKDISIMKFKSYTLQTESANS 235
                YA++     + +  IL+D  ++         +       +  FK+          
Sbjct: 173 RTLESYAEAKEAFFEDKYWILHDTTIYEMPLKFELGTNALNATRLKTFKTLKNFRPKVLD 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +    K        LL+ +                         + P     +S++ A  
Sbjct: 233 TIYQNKPAVSITDALLSLHALVRQNADTKKVRSFL-----YVFAILPFFVPFLSVLIAYF 287

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLM 353
              + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L  
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSLWY 347

Query: 354 IKKKYTKI 361
            KK   ++
Sbjct: 348 FKKLNKRL 355


>gi|317014913|gb|ADU82349.1| hypothetical protein HPGAM_07880 [Helicobacter pylori Gambia94/24]
          Length = 355

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/367 (11%), Positives = 107/367 (29%), Gaps = 21/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+ F+++  +           
Sbjct: 59  YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKRQILNPIFFISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVH------RKSPISKDISIMKFKSYTLQTESANSS 236
                YA++     + +  IL+D  ++           + + + ++              
Sbjct: 173 RTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTRLETFKTLKNFRPKVLD 232

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           TI       +++  L           +  +             + P     +S++ A   
Sbjct: 233 TIYQNKPAVSITDALFSLHALVRQNADTKKVRSF----LYVFAILPFFVPFLSVLIAYFS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMI 354
             + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L   
Sbjct: 289 PSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYF 348

Query: 355 KKKYTKI 361
           KK   ++
Sbjct: 349 KKLNKRL 355


>gi|207091759|ref|ZP_03239546.1| hypothetical protein HpylHP_01146 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 355

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/367 (12%), Positives = 110/367 (29%), Gaps = 21/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       S  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYISFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK------DISIMKFKSYTLQTESANSS 236
                YA++     + +  IL+D  ++      +      + + +K              
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTTIYEMPLKFELGANALNATRLKTFKTLKNFRPKVLD 232

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           TI       +++  L  + +    +    +  RS         + P     +S++ A   
Sbjct: 233 TIYQNKPAVSITDAL-LSLHALMRQNADTKKVRS---FLYVFAILPFFVPFLSVLIAYFS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMI 354
             + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L   
Sbjct: 289 PSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSLWYF 348

Query: 355 KKKYTKI 361
           KK   ++
Sbjct: 349 KKLNKRL 355


>gi|297250819|ref|ZP_06934296.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
 gi|296837907|gb|EFH21845.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
          Length = 181

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 45/128 (35%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +I+  +  +   + +   L +     +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGNLGKGSYNGAKLGQYVLMQMPAH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +    ++ +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGLIFAIATAALGEW 120

Query: 121 IEPKCRST 128
           I P     
Sbjct: 121 IAPALSQK 128


>gi|307638154|gb|ADN80604.1| Permease [Helicobacter pylori 908]
 gi|325996753|gb|ADZ52158.1| Permease [Helicobacter pylori 2018]
 gi|325998348|gb|ADZ50556.1| hypothetical protein hp2017_1432 [Helicobacter pylori 2017]
          Length = 355

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 111/367 (30%), Gaps = 21/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+ F+++  +           
Sbjct: 59  YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKRQILNPIFFISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVH------RKSPISKDISIMKFKSYTLQTESANSS 236
                YA++     + +  IL+D  ++           + + + ++              
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTRLETFKTLKNFRPKVLD 232

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           TI       +++  L  + +    +    +  RS         + P     +S++ A   
Sbjct: 233 TIYQNKPAVSITDAL-LSLHALMRQNADTKKVRS---FLYVFAILPFFVPFLSVLIAYFS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMI 354
             + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L   
Sbjct: 289 PSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYF 348

Query: 355 KKKYTKI 361
           KK   ++
Sbjct: 349 KKLNKRL 355


>gi|288817926|ref|YP_003432273.1| hypothetical protein HTH_0610 [Hydrogenobacter thermophilus TK-6]
 gi|288787325|dbj|BAI69072.1| hypothetical protein HTH_0610 [Hydrogenobacter thermophilus TK-6]
 gi|308751524|gb|ADO45007.1| permease YjgP/YjgQ family protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 352

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 113/355 (31%), Gaps = 6/355 (1%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+L    + F++    ++ I     + + + L      S NI +     L+P     
Sbjct: 2   LGKYVLFFYIKLFIVVNAILLGIVSSYALAELLFLFKEK--SANIAISYLLNLLPISFFY 59

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + PF   +    +L  +      LI+ + G S +  +  ++   + +S F  I    + P
Sbjct: 60  LLPFSAVITMMILLKHIFSKKLDLIVQSFGVSPLKFLLNIILFLVFVSFFNLIMSFDVYP 119

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           +    +  +  + +       L     +   ++   +I        ++   I      ++
Sbjct: 120 ESNKNLYSIEKEFKKRQEVEDLIVRNAWFFKEESGERIYINFQFVDIKDGNIAGVFLVKS 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            K    +   I  DR +   +   +      +        K  +++     ++  + +  
Sbjct: 180 SKSNILEV--IQSDRGSWKGDIILLPIAKVWNIKEGNFVAKGISIKLFEIKNAQPIGEKV 237

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
           +      L    +           Y SE  +R    L P+  G+  +  A KR  +    
Sbjct: 238 EHISLHQLLLLYSLGKRVGLNYHLYLSEIIRRFLSSLSPIAIGITVMSYAIKRRSILAG- 296

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                  +    +  F    +    +  NP Y    Y+ L  +S   L  + K +
Sbjct: 297 -FLSFVPAFFFYWFSFVLTRFFSESVSFNPLYGLFAYIPLVILSLKGLYYLGKGF 350


>gi|319760185|ref|YP_004124123.1| putative permease [Candidatus Blochmannia vafer str. BVAF]
 gi|318038899|gb|ADV33449.1| putative permease [Candidatus Blochmannia vafer str. BVAF]
          Length = 371

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 109/353 (30%), Gaps = 11/353 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI++ + R+ L+  + +  +    ++++ +     +   + ++       IP +  
Sbjct: 2   ILIRYIIKEVFRNQLIILILLFLVCICQKLIKIVG--VDNPIPVYLIFLHLTLNIPELGK 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V PF   +         + + E+L + +   +R   +K +   +I++ I   I+   + 
Sbjct: 60  LVIPFSLFLSVFITCYRFHLHNEILAMYSCAINRFFFVKSIFLYSIIVFIISLINVMWLS 119

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P C        +     +    L E  F  +     +   K   N  LQ IFIV      
Sbjct: 120 PYCEQLRYVTLSSINKNIYSIKLVEKKFLLMLSKHTVFFIKKIKNKNLQYIFIVKKNHHI 179

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                      I  +   +      +   +  S     + +          +  +     
Sbjct: 180 NGSNVCV---IITANNGDVYNYSNNLKAITLKSGTYYEIHYDQLIFTNIYISDFSRYHTL 236

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETY------RSEFHKRLTQWLFPVIFGLISIVAADKR 296
            D N+           +     L  +        E + R T  +  +I  +I+++     
Sbjct: 237 IDYNMKSPQKGFKIVEHMTISQLICHDSLPEKYIELNWRFTLLVSIIIMPIIALLLVINI 296

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +       +  I + +            I      +  Y+  + +  F I+ +
Sbjct: 297 SNGYFLNFVLAISLYILFFMLHILLRFSITLDYRDSMLYMGGVNVIYFIIALL 349


>gi|325287934|ref|YP_004263724.1| permease YjgP/YjgQ family protein [Cellulophaga lytica DSM 7489]
 gi|324323388|gb|ADY30853.1| permease YjgP/YjgQ family protein [Cellulophaga lytica DSM 7489]
          Length = 478

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 81/251 (32%), Gaps = 6/251 (2%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           + I     I   I  ++     L I+ K   Y +P+++  V P    + +     ++  N
Sbjct: 1   MLIFIFQTIWLYIGDLAGKGLDLEIIGKFIFYFMPSLIDKVLPLTVVLSSILTFGTLAEN 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   +  +G S    ++ ++   + L +  F   N + P     I  L          +
Sbjct: 61  YEFAAMKASGISLQRAMRTIIIFVLFLGVVAFFFANNVAPAAAHKIYNLKRNIGNVKPAA 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ--THKIYYAQSGSIDLDRQAI 201
            + E +F   +        K   N+      I+  +     ++ +  A+ G +     + 
Sbjct: 121 IIAEGIFSDFEGMNIKVDKKSGENDRFLENIIIHKKSNNVISNVVIKAKKGELVSSEDSD 180

Query: 202 ----ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
               IL DG  +         + +K      +      +  +   +DQ+L    N +   
Sbjct: 181 IVQLILKDGNYYEDVQSKNSKTKLKVPFAKAKFNEYIINIQLTDMSDQDLEEDRNVDTEK 240

Query: 258 PNYRPELLETY 268
                 L+   
Sbjct: 241 MKKVSRLIVDI 251



 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 7/106 (6%), Positives = 36/106 (33%), Gaps = 4/106 (3%)

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
           +      + + +    +    H +       +I   +    A   A++R+     P+ I+
Sbjct: 344 SARKKELDIKYQRYNIHILALHSKYALAFSCIILFFVG---APLGAIIRKGGMGLPMVIA 400

Query: 312 LSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMIKK 356
           + +    ++   ++ +  +       +  ++    +  + + +  +
Sbjct: 401 IILFLAYYFLGVFVGNSAKVGKIPPALAAWIPTLVMLPLGVFLTIR 446


>gi|308183601|ref|YP_003927728.1| hypothetical protein HPPC_07350 [Helicobacter pylori PeCan4]
 gi|308065786|gb|ADO07678.1| hypothetical protein HPPC_07350 [Helicobacter pylori PeCan4]
          Length = 355

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/368 (11%), Positives = 103/368 (27%), Gaps = 23/368 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHR-------KSPISKDISIMKFKSYTLQTESANS 235
                YA++       +  IL+D  ++         +       +  FK+          
Sbjct: 173 KTLESYAEAKEAFFKDKYWILHDTTIYEMPLSFELGNNALNTTRLKTFKTLKNFRPKVLD 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +    K        LL+ +                         + P     +S++ A  
Sbjct: 233 TIYQNKPAVSITDALLSLHALMRQNADTKKVRSFL-----YVFAILPFFVPFLSVLIAYF 287

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLM 353
              + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L  
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWY 347

Query: 354 IKKKYTKI 361
            KK   ++
Sbjct: 348 FKKLNKRL 355


>gi|109948225|ref|YP_665453.1| hypothetical protein Hac_1758 [Helicobacter acinonychis str.
           Sheeba]
 gi|109715446|emb|CAK00454.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 355

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/361 (11%), Positives = 98/361 (27%), Gaps = 9/361 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++KP+ F+++  +           
Sbjct: 59  YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKCQVLKPIFFISLFFTAIYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L             I        N         + ++ 
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYDDDYVYFGKIDPLLQKAQNIKVFRLKDKTLESY 178

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                    G       A I +          +     ++              TI    
Sbjct: 179 AEANEAFFEGKHWTLHDATIYSLPLNFDLGNNALSAMHLETFKTLKNFRPKVLDTIYQNK 238

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              ++   L         + +  +             + P     +S+  A     + + 
Sbjct: 239 PAVSIMDALFSLHALVRQKADTKKVRSF----LYVFAILPFFVPFLSVFIAYFSPSLARY 294

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP--ILYLFLFCISSIFLLMIKKKYTK 360
           + +  + +   I   V WG  + + K   +   IP   + L  F    I L   KK   +
Sbjct: 295 ENLALLGLKFIIITLVVWGLFFALGKFSISGILIPELGVLLPFFLFLIISLWYFKKLNKR 354

Query: 361 I 361
           +
Sbjct: 355 L 355


>gi|32491206|ref|NP_871460.1| hypothetical protein WGLp457 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166413|dbj|BAC24603.1| yjgQ [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 352

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 121/334 (36%), Gaps = 7/334 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YI   I ++ +++   ++ I+ +I+  ++I  + +S  S+  L+      +P  + 
Sbjct: 4   ILDRYIRSLIFKTTIVALFILLTISGIIKFSEKIQSIDNSYISIFYLISTILLSVPKDIE 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                   +     +  + +N EL+II+++G SRI +   ++   I+      I    I 
Sbjct: 64  EFFNISILIGILWSIGILEKNRELIIIESSGISRIKICILIIKTIIIFLFIYSIILEWII 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +   K++    F    +   +   ++ +I I K    + +QGI+I +     
Sbjct: 124 P------IEKKIKSKYFFNFISENKKNLWIKINNNFILIKKIVDFDFIQGIYIYEFNKFN 177

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             K   +   +I  +++ I+ +   +   +    +I+    + YT        + I+   
Sbjct: 178 EIKYIKSSKYAIFKNKEWIMFDVKTIKFNNNKKIEINSFDKQIYTNIITPKEINLILFPT 237

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
            + ++S L               + Y   F  ++   +  +I  +I +            
Sbjct: 238 EELSISELYFYIKFLKKNNLYYKKQYLV-FWNKIFSPISILIITIIILQLLFGILYSYDI 296

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
           K      ISL   F         +  I   P Y 
Sbjct: 297 KIKVVFVISLGFIFYFINNIFNSLIMIYDYPEYF 330


>gi|317178203|dbj|BAJ55992.1| hypothetical protein HPF16_1395 [Helicobacter pylori F16]
          Length = 355

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/368 (11%), Positives = 104/368 (28%), Gaps = 23/368 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHR-------KSPISKDISIMKFKSYTLQTESANS 235
                YA++     + +  IL+D  ++         +       +  FK+          
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTIIYEMPLSFELGNNALNATHLKTFKTLKNFRPKVLD 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +    K        LL+ +                         + P     +S++ A  
Sbjct: 233 TIYQNKPAVSITDALLSLHALVRQNADTKKVRSFL-----YVFAILPFFVPFLSVLIAYF 287

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLM 353
              + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L  
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLWY 347

Query: 354 IKKKYTKI 361
            KK   ++
Sbjct: 348 FKKLNKRL 355


>gi|326562956|gb|EGE13238.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis 46P47B1]
          Length = 267

 Score = 53.9 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/134 (10%), Positives = 42/134 (31%), Gaps = 4/134 (2%)

Query: 227 TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
           TL     +   +  +  D +LS L   +     ++      +   F ++L      +   
Sbjct: 137 TLPIAPTDVYLLTKEPEDLSLSSLY-AHRQLMAHQGTRSLRHELAFWQKLLSPFAVLSLV 195

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
           L++          R +     + ++L       +                 ++ L    +
Sbjct: 196 LVASSFVFGSL--RSQGLGLRVVLALLTGLLFSYLTDLTGFVALATGLSPLLMALVPIVL 253

Query: 347 SSI-FLLMIKKKYT 359
           S++  + ++ +K +
Sbjct: 254 SAMAGMYLLNRKSS 267


>gi|297380647|gb|ADI35534.1| Hypothetical protein HPV225_1517 [Helicobacter pylori v225d]
 gi|308064258|gb|ADO06145.1| hypothetical protein HPSAT_07215 [Helicobacter pylori Sat464]
          Length = 355

 Score = 53.9 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 110/367 (29%), Gaps = 21/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTTVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK------DISIMKFKSYTLQTESANSS 236
                YA++     + +  IL+D  ++      +      + + +K              
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTRLKTFKTLKNFRPKVLD 232

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           TI       +++  L  + +    +    +  RS         + P     +S++ A   
Sbjct: 233 TIYQNKPAVSITDAL-LSLHALMRQNADTKKVRS---FLYVFAILPFFVPFLSVLIAYFS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMI 354
             + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L   
Sbjct: 289 PSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYF 348

Query: 355 KKKYTKI 361
           KK   ++
Sbjct: 349 KKLNKRL 355


>gi|188528269|ref|YP_001910956.1| hypothetical protein HPSH_07675 [Helicobacter pylori Shi470]
 gi|188144509|gb|ACD48926.1| hypothetical protein HPSH_07675 [Helicobacter pylori Shi470]
 gi|308062762|gb|ADO04650.1| hypothetical protein HPCU_07550 [Helicobacter pylori Cuz20]
          Length = 355

 Score = 53.9 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 110/367 (29%), Gaps = 21/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK------DISIMKFKSYTLQTESANSS 236
                YA++     + +  IL+D  ++      +      + + +K              
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTRLKTFKTLKNFRPKVLD 232

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           TI       +++  L  + +    +    +  RS         + P     +S++ A   
Sbjct: 233 TIYQNKPAVSITDAL-LSLHALMRQNADTKKVRS---FLYVFAILPFFVPFLSVLIAYFS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMI 354
             + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L   
Sbjct: 289 PSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYF 348

Query: 355 KKKYTKI 361
           KK   ++
Sbjct: 349 KKLNKRL 355


>gi|153877760|ref|ZP_02004356.1| conserved hypothetical protein, membrane [Beggiatoa sp. PS]
 gi|152065776|gb|EDN65644.1| conserved hypothetical protein, membrane [Beggiatoa sp. PS]
          Length = 215

 Score = 53.9 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 60/206 (29%), Gaps = 3/206 (1%)

Query: 148 NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGE 207
             F+  D   +I +    P+     I + +  D Q  +       +   +    +L   E
Sbjct: 7   YGFWARDGHDFINVRTIFPDGGFGTISLYEFDDEQRLQALTYARTAYYQEG-KWLLKGVE 65

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
            +  S        ++  ++    +      +V+     +   L N          +    
Sbjct: 66  KNILSANQVTRQFLENVTWDAILKPELIKMVVISPYKLSSLGLYN-YIEYRQQNGQRTAQ 124

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF-GVFWGFSYII 326
           Y      RL+  L  V   L++I             +   +   L + F  +    S + 
Sbjct: 125 YELALWTRLSYPLVGVTMILLAIPFVFGSLRTVSIGQRILVGALLGVGFHMLNQAVSNMG 184

Query: 327 HKIEQNPYYIPILYLFLFCISSIFLL 352
                +P     L    F + +I ++
Sbjct: 185 LVYGLHPAISAFLPPLAFLMLAIVMM 210


>gi|317010128|gb|ADU80708.1| hypothetical protein HPIN_07620 [Helicobacter pylori India7]
          Length = 355

 Score = 53.9 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/367 (11%), Positives = 105/367 (28%), Gaps = 21/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVH------RKSPISKDISIMKFKSYTLQTESANSS 236
                YA++     + +  IL+D  ++           +   + +K              
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLD 232

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           TI       +++  L           +  +             + P     +S++ A   
Sbjct: 233 TIYQNKPAVSITDALLSLHALVRQNADTKKVRSF----LYVFAILPFFVPFLSVLIAYFS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMI 354
             + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L   
Sbjct: 289 PSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLWYF 348

Query: 355 KKKYTKI 361
           KK   ++
Sbjct: 349 KKLNKRL 355


>gi|317011633|gb|ADU85380.1| putative permease; putative membrane protein [Helicobacter pylori
           SouthAfrica7]
          Length = 355

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/367 (11%), Positives = 106/367 (28%), Gaps = 21/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+ F+++  +           
Sbjct: 59  YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKRQILNPIFFISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK------DISIMKFKSYTLQTESANSS 236
                YA++     + +  IL+D  ++      +      +   ++              
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTMRLETFKTLKNFRPKVLD 232

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           TI       +++  L           +  +             + P     +S++ A   
Sbjct: 233 TIYQNKPAVSITDALFSLHALMRQNADTKKVRSF----LYVFAILPFFVPFLSVLIAYFS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMI 354
             + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L   
Sbjct: 289 PSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYF 348

Query: 355 KKKYTKI 361
           KK   ++
Sbjct: 349 KKLNKRL 355


>gi|291277020|ref|YP_003516792.1| inner membrane protein OxaA [Helicobacter mustelae 12198]
 gi|290964214|emb|CBG40063.1| putative integral membrane protein [Helicobacter mustelae 12198]
          Length = 354

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/353 (13%), Positives = 98/353 (27%), Gaps = 9/353 (2%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+ R   R  L+    +      I  L+ ++   S   S N+++    Y     L    P
Sbjct: 4   YLGRQFFRFILIVFSALEIFFISIDSLKYLDQFPS---SANLIVLFFAYDFLYALNYTLP 60

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               + T     ++ ++ +       G +R  ++ PV F+++  +              +
Sbjct: 61  ISILLATIIFYLNLVKSNQYTAFLALGYTRKQILAPVFFISLTFTFLYVGLNATPFVYAQ 120

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
              + + ++         L             +        N          R     + 
Sbjct: 121 ERAEAIMSQENFTNITEDLLVKYENNYVYFQKLYPLIKRAENIKVFELDKQGRLQSFAQA 180

Query: 187 YYAQS-GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ 245
             A    +  +   A I    E         ++S +               TI       
Sbjct: 181 KDAIFLHNYWVLSHASISKVPEETTLGKAGLEVSEVDKLKILKGFRPKILDTIYQNKPSV 240

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
           ++   +         +    E  R+  +      L P    L SI+       + +   +
Sbjct: 241 SIIDAIQSLI-ILQNQDSNSEKIRAILY---AFILIPFFVPLTSIIIGFYAPTLSRYSNL 296

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQNPYYIP-ILYLFLFCISSIFLLMIKKK 357
             +     +   V WG  +   K+  +    P I+ L  F +  +  L   KK
Sbjct: 297 ALLGFMFIVLALVIWGLFFAFGKLSISGLLPPEIMMLIPFGLLCVLSLFYFKK 349


>gi|210135665|ref|YP_002302104.1| hypothetical protein HPP12_1476 [Helicobacter pylori P12]
 gi|210133633|gb|ACJ08624.1| hypothetical protein HPP12_1476 [Helicobacter pylori P12]
          Length = 355

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/364 (10%), Positives = 107/364 (29%), Gaps = 15/364 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRK---SPISKDISIMKFKSYTLQTESANSSTIV 239
                YA++     + +  IL+D  ++       +  +             ++     + 
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLD 232

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               ++    + +   +      +  +T +          + P     +S++ A     +
Sbjct: 233 TIYQNKPAVSITDALLSLHALVRQNADTKKVRSF-LYVFAILPFFVPFLSVLIAYFSPSL 291

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMIKKK 357
            + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L   KK 
Sbjct: 292 ARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSLWYFKKL 351

Query: 358 YTKI 361
             ++
Sbjct: 352 NKRL 355


>gi|163788154|ref|ZP_02182600.1| hypothetical protein FBALC1_07233 [Flavobacteriales bacterium
           ALC-1]
 gi|159876474|gb|EDP70532.1| hypothetical protein FBALC1_07233 [Flavobacteriales bacterium
           ALC-1]
          Length = 637

 Score = 53.5 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 80/253 (31%), Gaps = 7/253 (2%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           +FI  +  +   I  ++     + +  K   Y +P ++P+V P    + +  V  +   N
Sbjct: 1   MFIFVLQGVWLYIAELAGKDLDVAVTAKFIMYYMPKLIPLVVPLTVLLSSIMVFGNFAEN 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   + +TG S    ++ +    + L I  F   N + P        L           
Sbjct: 61  YEFAAMKSTGISLQRAMRSLSVFIVALGIGCFFFANNVIPWGEYNFYNLRRNIAKKKPAL 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT---QTHKIYYAQSGSIDLDRQA 200
            + E  F  + +       K   N       I+  +       + +  +++G +     +
Sbjct: 121 AIAEGQFNEIGNINIKVEEKSGDNGQFLKNVIIHEKSKTRGGNYTVIASKNGELKSSPDS 180

Query: 201 IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNY 260
            IL        +  ++   I+       +     +S       + +L  L   + +  N+
Sbjct: 181 NILQL----ELTNGNRYQEIINKNRSKNKNLPHTNSYFDKYIINVDLEILNTGDLDEKNH 236

Query: 261 RPELLETYRSEFH 273
                     + +
Sbjct: 237 TDRYSMLDVEQLN 249



 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 4/104 (3%)

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
           +   +L+ N      +  +L  +    H +       +I   +          +R+    
Sbjct: 318 STRQILDSNKKTFEKKSIILNKHIIVLHDKFVLAFACIILFFVGAPLGAL---IRKGGLG 374

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
            P+ I++ + F  ++ F        +   + PIL  +L     +
Sbjct: 375 LPMVIAIVL-FLTYYFFGIFAKNSAEKGSFSPILGSWLSTAIML 417


>gi|320088911|emb|CBY98669.1| Lipopolysaccharide export system permease protein lptG [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 158

 Score = 53.5 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 56/145 (38%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++                +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVPKDIQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEEN 148
           +     +   A+A      ++    
Sbjct: 127 QGEQMARNYRAQAMYGGFAAFHPAR 151


>gi|145637644|ref|ZP_01793299.1| predicted permease [Haemophilus influenzae PittHH]
 gi|145269167|gb|EDK09115.1| predicted permease [Haemophilus influenzae PittHH]
          Length = 161

 Score = 53.5 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 54/126 (42%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  IP  +
Sbjct: 3   NTLDRYIGKSILGTIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTIPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I     
Sbjct: 63  ETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTVIIGEWG 122

Query: 122 EPKCRS 127
            P+   
Sbjct: 123 IPQTEQ 128


>gi|315585885|gb|ADU40266.1| conserved hypothetical protein [Helicobacter pylori 35A]
          Length = 355

 Score = 53.5 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 111/367 (30%), Gaps = 21/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  ++          
Sbjct: 59  YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTVVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVH------RKSPISKDISIMKFKSYTLQTESANSS 236
                YA++     + +  IL+D  ++           + + + +K              
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTIIYEMPLSFELGNNALNATHLKTFKTLKNFRPKVLD 232

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           TI       +++  L  + +    +    +  RS         + P     +S++ A   
Sbjct: 233 TIYQNKPAVSITDAL-LSLHALMRQNADTKKVRS---FLYVFAILPFFVPFLSVLIAYFS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMI 354
             + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L   
Sbjct: 289 PSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYF 348

Query: 355 KKKYTKI 361
           KK   ++
Sbjct: 349 KKLNKRL 355


>gi|217033870|ref|ZP_03439294.1| hypothetical protein HP9810_870g2 [Helicobacter pylori 98-10]
 gi|216943633|gb|EEC23078.1| hypothetical protein HP9810_870g2 [Helicobacter pylori 98-10]
          Length = 355

 Score = 53.5 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 111/367 (30%), Gaps = 21/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVH------RKSPISKDISIMKFKSYTLQTESANSS 236
                YA++     + +  IL+D  ++           + + + +K              
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTIIYEMPLSFELGNNALNATHLKTFKTLKNFRPKVLD 232

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           TI       +++  L  + +   ++    +  RS         + P     +S++ A   
Sbjct: 233 TIYQNKPAVSITDAL-LSLHALMHQNADTKKVRS---FLYVFAILPFFVPFLSVLIAYFS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMI 354
             + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L   
Sbjct: 289 PSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYF 348

Query: 355 KKKYTKI 361
           KK   ++
Sbjct: 349 KKLNKRL 355


>gi|261838772|gb|ACX98538.1| hypothetical protein KHP_1349 [Helicobacter pylori 51]
          Length = 355

 Score = 53.5 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/367 (11%), Positives = 106/367 (28%), Gaps = 21/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK------DISIMKFKSYTLQTESANSS 236
                YA++     + +  IL+D  ++      +      + + +K              
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTIIYEMPLSFELGANALNTTHLKTFKTLKNFRPKVLD 232

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           TI       +++  L           +  +             + P     +S++ A   
Sbjct: 233 TIYQNKPAVSITDALLSLHALVRQNADTKKVRSF----LYVFAILPFFVPFLSVLIAYFS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMI 354
             + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L   
Sbjct: 289 PSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYF 348

Query: 355 KKKYTKI 361
           KK   ++
Sbjct: 349 KKLNKRL 355


>gi|82523966|emb|CAI78777.1| predicted permease YjgP/YjgQ family [uncultured epsilon
           proteobacterium]
          Length = 356

 Score = 53.5 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/360 (11%), Positives = 113/360 (31%), Gaps = 12/360 (3%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
             YI     + FL+  + ++        ++    +SS   S N++L    Y     + M+
Sbjct: 4   FKYISFHYIKYFLIILIALMLFLVGFDYMENAGDLSS---SANLVLIYLVYKAFFAIDML 60

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P        +    + R+  L+   + G SR+ +++P + ++  + +            
Sbjct: 61  LPLSLVFAMVSTKIFLIRSNALVSFYSLGYSRVDVLRPFVVVSTSIIVIFISL---HALP 117

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTH 184
             S   + S   +    +     +LFF   D               +GI +    +    
Sbjct: 118 SFSRADEYSNNIRKNAEYLSPTRDLFFTYKDQYVYFSKMLPLQERAEGIRVFSVINNSLQ 177

Query: 185 KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
           ++  A+S     D   I   D          +   I       ++        I+ +  +
Sbjct: 178 EVLVAKSAVYRDDYWHIKQADIIRKPIDLSFESSGIRVTSVEDMKILEGFRPKILDQVYE 237

Query: 245 QNLSFLLNPNPNN---PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             ++F +    +       +   + T +   +K      F     +I         +  +
Sbjct: 238 GKVNFTITDAIDAIFLLKNQNISVSTIKGALYKIFVYPFFVPCLVIIIFFFVP---ISPR 294

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTKI 361
              +        ++  + WG  +++ ++  N      + +    +    + M + ++ ++
Sbjct: 295 FLNVSLFSFGAILATLLVWGILFMLIELSNNKTIPSEIGVVAPIVILFLISMRQYRHYRL 354


>gi|313144652|ref|ZP_07806845.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313129683|gb|EFR47300.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 341

 Score = 53.5 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 126/358 (35%), Gaps = 17/358 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+     + F    L + FIA V+ ++           S   L  +  YLIP+ 
Sbjct: 1   MAMLKKYLFSSFAQIFFPFFLVLFFIASVVLLIDIAGRTYVVKMSFLDLGTLFMYLIPSS 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P  F       ++ +  + EL++  + G+  + +++  L + +L ++ LF+   I
Sbjct: 61  LFFIIPITFFAALVLGISRLAYDYELMVCFSLGSKPLDMVRFFLPITLLATLVLFVFSFI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S  K   A+ +  +  +        +L D L         N   Q + +     
Sbjct: 121 LLPLTTSASKNFVAQKKADIDVNIKPGEFGQKLGDWLVYV--DSVDNRKYQNLVLFSENG 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +      AQSG  + ++    LN           ++I  + + + +++   +       
Sbjct: 179 FEGDTFIVAQSGQTNNNQGLFELNLTSGKAYFAAPEEIKRVDYNTMSVRQNVSEPQ---- 234

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L+       +              ++L Q +   +F L+SI       +  
Sbjct: 235 ----LSGYDLIAYWKEAFSLESRQK-------LRKLAQAVMVSLFPLVSIFLIPLFGIAN 283

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R + +  +  +  S  +++   YI          I I  L+ F    ++   I + Y
Sbjct: 284 PRFRSNMSYFYVIGSVALYFVLMYIASDNFALVGMISIPILWFFGGFFLYKKFIARFY 341


>gi|317179675|dbj|BAJ57463.1| hypothetical protein HPF30_1366 [Helicobacter pylori F30]
          Length = 355

 Score = 53.1 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/367 (11%), Positives = 106/367 (28%), Gaps = 21/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK------DISIMKFKSYTLQTESANSS 236
                YA++     + +  IL+D  ++      +      + + +K              
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTIIYEMPLSFELGANALNATHLKTFKTLKNFRPKVLD 232

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           TI       +++  L           +  +             + P     +S++ A   
Sbjct: 233 TIYQNKPAVSITDALLSLHALVRQNADTKKVRSF----LYVFAILPFFVPFLSVLIAYFS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMI 354
             + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L   
Sbjct: 289 PSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLWYF 348

Query: 355 KKKYTKI 361
           KK   ++
Sbjct: 349 KKLNKRL 355


>gi|255321867|ref|ZP_05363017.1| tRNA-I [Campylobacter showae RM3277]
 gi|255300971|gb|EET80238.1| tRNA-I [Campylobacter showae RM3277]
          Length = 353

 Score = 53.1 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 110/361 (30%), Gaps = 13/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y+     + F++  + +      I IL  +  +     S N+ L   G    T 
Sbjct: 1   MNLYARYVGWLYFKYFVILFIALTLFYVGIDILTNLKDM---PASANLKLLYFGLTSLTA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P            SM R+ EL+     G  +  LIKP  ++A+ +++        
Sbjct: 58  VNYVLPLALIFALITSKFSMIRSNELVSFYALGIDKNRLIKPPFYIALAITLIYVGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    + +   + L+ T      ++F + +       S    +   + + I D   
Sbjct: 118 PFAYAYEYGRNIVKLSNLSRTS----SDIFLKFEGKFVYMDSLNPISGEAKDVRIFDIDS 173

Query: 181 TQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +      + +SG    D    ++A I+N  +  +      DI            +     
Sbjct: 174 SNLRSATFGESGKFIDDAWLLKEAKIVNLPQNIKLGEKGLDIKTPSGLKTLEGFKPKTIE 233

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-K 295
           +   + +   +S  ++      +     L + ++  +       F     LI        
Sbjct: 234 SASAENSAITISDAVDYILAFKDE-GIGLNSTKTTLYNLAFAPFFAPFMVLIIYYFLPVT 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                   K     I+    +G  +           +P    +L + L    + +L    
Sbjct: 293 GRFFNLALKSFIFTIASLCVWGALFVMMRFARNGVVSPEIGVLLPIILLGAYAFYLHFKS 352

Query: 356 K 356
           +
Sbjct: 353 R 353


>gi|126663512|ref|ZP_01734509.1| hypothetical protein FBBAL38_09189 [Flavobacteria bacterium BAL38]
 gi|126624460|gb|EAZ95151.1| hypothetical protein FBBAL38_09189 [Flavobacteria bacterium BAL38]
          Length = 156

 Score = 53.1 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 57/135 (42%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F +  +  + I   I + +++N +      L  +L   G      
Sbjct: 1   MKIIDKYILKRYLVTFSVMLIMFIPIGITIDVSEKVNKMIEKKIPLTDILVYYGDFTVYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++ I ++G S    ++P ++ A+++SIF  +    
Sbjct: 61  ANLLFPIFLFLSIIWFTSKLANNTEIIAILSSGISFARFLRPFIYGAVIVSIFALLMGFF 120

Query: 121 IEPKCRSTIKQLSAK 135
           + P+          +
Sbjct: 121 LIPQASKGFNDFRYQ 135


>gi|15646107|ref|NP_208289.1| hypothetical protein HP1498 [Helicobacter pylori 26695]
 gi|2314682|gb|AAD08544.1| predicted coding region HP1498 [Helicobacter pylori 26695]
          Length = 355

 Score = 53.1 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/364 (10%), Positives = 107/364 (29%), Gaps = 15/364 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAIYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRK---SPISKDISIMKFKSYTLQTESANSSTIV 239
                YA++     + +  IL+D  ++       +  +             ++     + 
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLD 232

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               ++    + +   +      +  +T +          + P     +S++ A     +
Sbjct: 233 TIYQNKPAVSITDALLSLHALVRQNADTKKVRSF-LYVFAILPFFVPFLSVLIAYFSPSL 291

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMIKKK 357
            + + +  + +   I   V WG  + + K   +   IP + +    F   ++ L   KK 
Sbjct: 292 ARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSLWYFKKL 351

Query: 358 YTKI 361
             ++
Sbjct: 352 NKRL 355


>gi|261840174|gb|ACX99939.1| hypothetical protein HPKB_1402 [Helicobacter pylori 52]
          Length = 355

 Score = 53.1 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/368 (11%), Positives = 104/368 (28%), Gaps = 23/368 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAIYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DKINPLLQKAQNIKVFRLKG 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHR-------KSPISKDISIMKFKSYTLQTESANS 235
                YA++     + +  IL+D  ++         +       +  FK+          
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTIIYEMPLSFELGNNALNTTRLKTFKTLKNFRPKVLD 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +    K        LL+ +                         + P     +S++ A  
Sbjct: 233 TIYQNKPAVSITDALLSLHALVRQNADTKKVRSFL-----YVFAILPFFVPFLSVLIAYF 287

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLM 353
              + + + +  + +   I   V WG  + + K   +   IP + +    F   S+ L  
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLSLSLWY 347

Query: 354 IKKKYTKI 361
            KK   ++
Sbjct: 348 FKKLNKRL 355


>gi|91204094|emb|CAJ71747.1| hypothetical protein kustc1002 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 578

 Score = 53.1 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 93/287 (32%), Gaps = 16/287 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + Y++R   ++F  S L    + ++  ++Q +         +  L  +  ++   V 
Sbjct: 52  NILQRYVIREWFQTFWPSFLCFEILMFLGFVIQIL----HKGLDIIALKALIPHMFIQVA 107

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P      TT     ++ + E++ I  +G     +I PVL + I+ S F  +    I
Sbjct: 108 PYSIPSALLTATTLTYGRLSADREIIAIQASGIHLRKIITPVLVIGIIFSFFTLVLSAEI 167

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+    IK L  +A   +    L       L +   I I     N       I  + D 
Sbjct: 168 LPRSLYQIKLLQERAINNILAGRLATFQKKVLMEPYQIYIGNVVDNINKDVTVIQYADDY 227

Query: 182 QTHKIYYAQSGSIDLDRQAII---LNDGEVHRKSPISKD--ISIMKFKSYTLQTESANSS 236
            T  I   +      + +  I   L  GE  + +    +    +  F   T +       
Sbjct: 228 VTDIIIAEEGSIEVNNEKNTIFLTLRKGEFIKPNYKKAEEVPRLGVFTETTFEIPMGKDK 287

Query: 237 TIVLKANDQNLSFLLNPNPN------NPNYRPELLETYRSEFHKRLT 277
                     +  L   N        N    P+  E  R E  ++L 
Sbjct: 288 -ADFSTKHMTIFQLFKYNNEIDRELANSKEIPDNFEEARVEASRKLA 333



 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 12/118 (10%)

Query: 244 DQNLSFLLNPNPN-----NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           ++N+S LL    +         + +L        HKR++Q L  + F +I I    K   
Sbjct: 455 EKNISVLLRKITSFESDLTLASKKKLRRKNDISIHKRISQALSCLSFIVIGIPLGIKLRS 514

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLL 352
                 I    +S  I   +++        +  +     +  L+    +  I  I + 
Sbjct: 515 SH---LIIGFGVSFMIILFIYYPLMVTGSVLADDTLLPVVPVLWGANGILLIVGICIY 569


>gi|320101900|ref|YP_004177491.1| permease YjgP/YjgQ family protein [Isosphaera pallida ATCC 43644]
 gi|319749182|gb|ADV60942.1| permease YjgP/YjgQ family protein [Isosphaera pallida ATCC 43644]
          Length = 392

 Score = 53.1 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 42/391 (10%), Positives = 113/391 (28%), Gaps = 37/391 (9%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK----ISGYLI 57
           +  +        +++++    +V +  VI     ++    +   L  +++         I
Sbjct: 6   RILDRQRYWSFVKAYVICFSSLVGLYIVIHAFANVDEFGKAAPGLMGVVRAMGFYYLIRI 65

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
                 +      M     +T M ++ +L+ +   G S    I+PVL  ++L+S+   I+
Sbjct: 66  SQYYDQLCGVIAMMAAIFTVTFMQKDNQLVAMLAAGISTHRAIRPVLVCSVLVSLLAVIN 125

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
           + +I P+ ++ +                  +L            ++            + 
Sbjct: 126 QELILPRFQTELSLKPDDDGKRPLPVSNLYDLNEIPIHGRKADRARRAMILNATLPIGLT 185

Query: 178 SRDTQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               +                  +   +L    +       +   + K   + L     +
Sbjct: 186 GTLRELEARDALHIPHDHPTAPLKGGWLLRGATISPPLEEDEVGPLKKLSRHELNGFPPS 245

Query: 235 SSTIVL--KANDQNLSFLLNPNPNNPNYRPELLETYR----------------------S 270
           + +      +++Q+  F  N         P+    Y                        
Sbjct: 246 TLSQAELGGSDEQSYFFFTNITFEMLTRDPKEWMQYASSGQLIAALGDPSNAADHLAISI 305

Query: 271 EFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE 330
           + H+RL +    +                  R     +  +L  +  +F+G  ++   + 
Sbjct: 306 QLHQRLLRPFLSLALL---CAVLPSVLGGPNRNMFISLGYALGTT-ALFYGGLFLFQYLA 361

Query: 331 QNPYYIPILYLFLFCISSIFLLMIKKKYTKI 361
                 PI     F   ++F L+   +++ I
Sbjct: 362 TRGAISPIDAA--FAPLAVFSLLAAMRWSAI 390


>gi|315122194|ref|YP_004062683.1| putative permease protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495596|gb|ADR52195.1| putative permease protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 321

 Score = 53.1 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/318 (10%), Positives = 89/318 (27%), Gaps = 8/318 (2%)

Query: 43  TESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKP 102
             S +    +S   +P ++    PF   + +  V  ++NR  EL+I    G S   L+ P
Sbjct: 6   GYSTSRGAMLSVTRLPLIIQQTIPFISLIVSMIVFFNLNRTNELVITRAVGVSIWQLLSP 65

Query: 103 VLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
               + LL +F  +  N +          +    +     +          +      I 
Sbjct: 66  FTTGSFLLGMFTILVINPMAVSGEKMGISMVNNWRTHDQKTLEIIPWIHIENKKEDFFIG 125

Query: 163 KYNPNNTLQ--GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISI 220
                        F   + + +   I+   +    + +  I L +   ++          
Sbjct: 126 AKKILPEKNILEDFTFITVNKENDTIFRQDAHFAIVQKNNIYLKEVVEYKY---GALPVF 182

Query: 221 MKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL 280
                  +  +         +    +   ++     +            ++F+  ++   
Sbjct: 183 KNSTILNIAIKMNYFQKFTEQFTSHSFYEIIKKVIFSHQSSVFRNYFSETQFYFMISIPF 242

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
             V   LI+   +      R  +    +   +   F ++   + +    +          
Sbjct: 243 MLVAMTLIAAAVSL--EFNRSNQPRIIVTYGVCAGFMLYTIITLMKSFGKSGILLPFAAA 300

Query: 341 LFLFC-ISSIFLLMIKKK 357
           L     I  + + ++ KK
Sbjct: 301 LIPIISIICLSIFILLKK 318


>gi|307721571|ref|YP_003892711.1| permease YjgP/YjgQ family protein [Sulfurimonas autotrophica DSM
           16294]
 gi|306979664|gb|ADN09699.1| permease YjgP/YjgQ family protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 358

 Score = 52.7 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 109/356 (30%), Gaps = 10/356 (2%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
             YI     + FL+    +V        +     +S S  S N++L    Y   + + ++
Sbjct: 4   FKYISLHYIKYFLIILTALVLFVVGFDYMGSAEELSKS--SANLILIYLVYKSFSAIDIL 61

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P        +    + R+  L+   + G SR+ +++P +F++  + I            
Sbjct: 62  LPVALVFAMISTKIYLIRSNALVSFFSLGYSRVDVLRPFVFVSTAVIILFIALHAWS--- 118

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTH 184
             +  ++ S   +    +     +LFF                 + + I +    +    
Sbjct: 119 NFARSEEFSRNIKKNAQYLSPTRDLFFAYKGKYIYFSKLLPLQESAKNIRVFSVENESLK 178

Query: 185 KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
           ++  A+S     +   I   D              I   K+  L+        ++ +  +
Sbjct: 179 EVVVAKSARYIDNYWFIKRADIITKPDDLSLVSPGITVTKAKDLRILEGFRPKMLDQVYE 238

Query: 245 QNLSFLLN---PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             ++F +          + +    +  ++  +K      F     LI I+       VR 
Sbjct: 239 GKVNFTIKDAVDAIRLLDKQNINTDNIKAALYKIFIYPFFVP--CLIVIIFFFVPMSVRF 296

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  F ++  +   +    ++I           I  +    I ++   +   +
Sbjct: 297 LNVSLFTFGAILATLLTWGILFFLIKLANNKVISSEIGIIVPVVILAVLAFLQWHR 352


>gi|222824356|ref|YP_002575930.1| hypothetical protein Cla_1363 [Campylobacter lari RM2100]
 gi|222539577|gb|ACM64678.1| conserved hypothetical integral membrane protein [Campylobacter
           lari RM2100]
          Length = 353

 Score = 52.7 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 98/357 (27%), Gaps = 5/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  YI     +SF +    + F    I  L   N +     S N+ L    +L  + 
Sbjct: 1   MNVFFRYISSLYLKSFFILFFSLTFFFVAIDFLVNFNKIPK---SANLELLYILFLTCSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P          + +M R+ E + +   G S+  +I      A+            
Sbjct: 58  VSYILPLAIVFALILCVFNMIRSNEFVSLYALGLSKNQVIFYPFLWALFFCFVYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                      +     ++     +      +         +            +   + 
Sbjct: 118 PFAYANEYKSNIIKTGLVSREGGNVLIKYDNKFVYIEKTSTNSLYNVKIFDVKNLDIKQL 177

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           TQ  K  +       +D + I + D  +  +  +                +     ++V 
Sbjct: 178 TQAKKAQFNGQSWELIDVKTIKVPDKLIVSQEGLKIKDFKSIKGLENFSPKILERISLVE 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS-IVAADKRALV 299
                ++S  L  +      +     T R+  +  +    F     L+            
Sbjct: 238 SDPSYSISDAL-ESILIFAKQDISTNTLRTSLYSLVFIPFFAPFLMLVIYYYFPITARFF 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                    FIS+  ++G+ +  + +       P +  +L +F+      +     K
Sbjct: 297 NLAFLAFVFFISVLSAWGLLFLLTRLSENEILLPEFGIMLPIFILICMGSWFYYKNK 353


>gi|223038562|ref|ZP_03608855.1| methionyl-tRNA formyltransferase [Campylobacter rectus RM3267]
 gi|222879964|gb|EEF15052.1| methionyl-tRNA formyltransferase [Campylobacter rectus RM3267]
          Length = 353

 Score = 52.7 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 108/361 (29%), Gaps = 13/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y+     + F++  + +      I IL  +  +     S N+ L   G    T 
Sbjct: 1   MNLYARYVGWLYFKYFVILFVALTLFYVGIDILTNLKSM---PASANLKLLYFGLTSLTA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P            SM R+ EL+     G  +  LIKP  ++A+ ++         
Sbjct: 58  VNYVLPLSLIFALIASEFSMIRSNELVSFYALGIDKNRLIKPPFYIALTITFVYVGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    + +   + L+ T      ++F + +       S    +   + + I D   
Sbjct: 118 PFAYAYEYGRNIVKLSNLSRTS----SDIFLKFEGKFVYMDSLNPISGEAKDVRIFDING 173

Query: 181 TQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +      +  S     D    +QA I+N  +  +      DI  +         +     
Sbjct: 174 SNLRSATFGLSARFVDDLWLVKQAKIVNLPQNIKLGEKGLDIKRLGELKTLENFKPKTIE 233

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-K 295
               +++   +S  ++      N     L + ++  +       F     LI        
Sbjct: 234 NAAAESSAITISDAVDYIQAFKNE-GIGLNSVKTTLYNLAFSPFFAPFMVLIIYYFLPVT 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                   K     I+    +G  +           +P    +L + L    + +L    
Sbjct: 293 GRFFNLALKSFIFTIASLCVWGALFVMMRFARNGVISPEIGVLLPVILLGTYAFYLHFKA 352

Query: 356 K 356
           +
Sbjct: 353 R 353


>gi|260891452|ref|ZP_05902715.1| permease, YjgP/YjgQ family [Leptotrichia hofstadii F0254]
 gi|260858835|gb|EEX73335.1| permease, YjgP/YjgQ family [Leptotrichia hofstadii F0254]
          Length = 153

 Score = 52.7 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 49/129 (37%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI   +    +       FI  +  I++ +  + +S      ++    Y IP V
Sbjct: 1   MKIIDRYIYNSLFLPSIFGISIFTFIMMLNVIMEVMERLFASDLPFISIIDYLFYAIPGV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +    V   ++   E++ ++ +G     +I+P     I+L++     E  
Sbjct: 61  LVQTIPMGAFLGVMLVYGGLSETNEIVAMEGSGIGLFRIIRPAFIFGIILTLIGLGLEIY 120

Query: 121 IEPKCRSTI 129
           + P+     
Sbjct: 121 VNPRALKKY 129


>gi|13236182|gb|AAK16078.1|AF288080_5 YacA [Photorhabdus luminescens]
          Length = 146

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/133 (10%), Positives = 37/133 (27%), Gaps = 1/133 (0%)

Query: 225 SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
            +  +        + L  +  ++S L            +    Y+    K++       +
Sbjct: 15  DWKTRLTPQKLGVVALDPDALSISGLYQ-YIKYLKQTEQESGXYQLNMWKKIFAPFSVAV 73

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
             L+++                   IS    F V       +  +   P  +  L     
Sbjct: 74  MMLMALSFIFGPLRTVLMGVRIITGISFGFLFYVLNEIFGPLSLVYSMPAVLAALLPSFL 133

Query: 345 CISSIFLLMIKKK 357
            ++    L++K++
Sbjct: 134 FLTVSIYLLLKRQ 146


>gi|225848004|ref|YP_002728167.1| permease, YjgP/YjgQ family [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644087|gb|ACN99137.1| putative permease, YjgP/YjgQ family [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 339

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 113/357 (31%), Gaps = 20/357 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL+   + F++       +    Q+L   N     + +L   L++   +  + 
Sbjct: 1   MKILHRYILKNFFKKFIILIGLFSIVITSSQLLHLPNFA--YSMNLIDFLQLLVMIDISF 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L     F F +    V  S+  N E+  + + G S+  L+KPV     L +    I    
Sbjct: 59  LKYQILFGFFIAWLLVGVSIRENNEIYAVYSLGVSQKELLKPVFITTTLFTALALIVSIT 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P       +             ++   F ++++++ +           +   +     
Sbjct: 119 LIPYANQERSKFLTLKVKNYILESIQPKNFSKINENISVYTESK------ENSTLHKIII 172

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                 Y   +      +  ++L DG +H  S  S  +   +  S++L T       +  
Sbjct: 173 YNKSNKYLITAKEGIFFQDKVVLKDGYIHIPSEKSFSVIKYEKYSFSLDTSYVKEIPLED 232

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
               Q ++   +   +       L++                               L  
Sbjct: 233 YKTSQLINVFFSKEKDYQKAYSVLIDRIFFPIPFIFIG------------FIGFLLGLNF 280

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            + K   + + +SIS          I  IE+N +   +  L L  + S  L  + KK
Sbjct: 281 SKSKETLLSLVISISILYMVINYLFIRVIEKNTFISFVYLLVLILLFSGILRFVWKK 337


>gi|15807417|ref|NP_296150.1| hypothetical protein DR_2430 [Deinococcus radiodurans R1]
 gi|6460254|gb|AAF11980.1|AE002073_10 hypothetical protein DR_2430 [Deinococcus radiodurans R1]
          Length = 350

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 103/357 (28%), Gaps = 11/357 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                 ILR + + +      ++ + +   +   +    +   + +        ++PT+ 
Sbjct: 4   SILPRSILREVLKMYGAGLALLLALQFADTLSSTLGKAIAYRATASESATAFLAILPTIF 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
                          L+ + R++EL      G   ++L+ P+L    L+    F +   +
Sbjct: 64  NRALVLSVPFAILLGLSRLQRDSELKAAFAAGIRPLSLVWPLLLPFTLVGALAFWNAGTV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P       +               +N  +     LY    +       Q   +      
Sbjct: 124 VPAGLDRWDKTWYSIFNVPEKIPTRDNYTYAPPGALYY-AGRVTQAPQGQPAPLAGVMVQ 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +   +Y A SGS +   Q+  L+   V      +      + ++  +     ++      
Sbjct: 183 RGGVVYTANSGSWNTAAQSWTLDAPWV------TAPGERPRQQAGPVTLPQGDTLRPPPA 236

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
              +  +  L       +   +    Y  +   R      P+ F    + AA    L+R 
Sbjct: 237 EAKKVSNAALRTALAGESLTEQERREYTYQLASRYADPFTPIAFA---LAAAVLGLLIRN 293

Query: 302 RKKIHPIFISLSISFGVFWGFS-YIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +       I     F V W     +      +P     +   +F +  + L     +
Sbjct: 294 QAAALAAVIVFIAGFYVLWITMPQLARAGAVDPTLAAWVPSLIFLLLGLGLAWRVNR 350


>gi|217031844|ref|ZP_03437347.1| hypothetical protein HPB128_199g52 [Helicobacter pylori B128]
 gi|298735532|ref|YP_003728053.1| hypothetical protein HPB8_32 [Helicobacter pylori B8]
 gi|216946496|gb|EEC25098.1| hypothetical protein HPB128_199g52 [Helicobacter pylori B128]
 gi|298354717|emb|CBI65589.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 355

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/364 (11%), Positives = 107/364 (29%), Gaps = 15/364 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       S  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYISFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L                         +   I   R   
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYF------DEINPLLQKAQNIKVFRLKD 172

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRK---SPISKDISIMKFKSYTLQTESANSSTIV 239
                YA++     + +  IL+D  ++       +  +             ++     + 
Sbjct: 173 KTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLD 232

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               ++    + +   +      +  +T +          + P     +S++ A     +
Sbjct: 233 TIYQNKPAVSITDALLSLHALVRQNADTKKVRSF-LYVFAILPFFVPFLSVLIAYFSPSL 291

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMIKKK 357
            + + +  + +   I   V WG  + + K   +   IP + +    F   S+ L   KK 
Sbjct: 292 ARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLSLSLWYFKKL 351

Query: 358 YTKI 361
             ++
Sbjct: 352 NKRL 355


>gi|224438206|ref|ZP_03659141.1| hypothetical protein HcinC1_09510 [Helicobacter cinaedi CCUG 18818]
          Length = 339

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 125/355 (35%), Gaps = 17/355 (4%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+     + F    L + FIA V+ ++           S   L  +  YLIP+ L  
Sbjct: 2   LKKYLFSSFAQIFFPFFLVLFFIASVVLLIDIAGRTYVVKMSFLDLGTLFMYLIPSSLFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       ++ +  + EL++  + G+  + +++  L + +L ++ LF+   I+ P
Sbjct: 62  IIPITFFAALVLGISRLAYDYELMVCFSLGSKPLDMVRFFLPITLLATLVLFVFSFILLP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
              S  K   A+ +  +  +        +L D L         N   Q + +      + 
Sbjct: 122 LTTSASKNFVAQKKADIDVNIKPGEFGQKLGDWLVYV--DSVDNRKYQNLVLFSENGFEG 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
                AQSG  + ++    LN           ++I  + + + +++   +          
Sbjct: 180 DTFIVAQSGQTNNNQGLFELNLTSGKAYFAAPEEIKRVDYNTMSVRQNVSEPQ------- 232

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             +   L+       +              ++L Q +   +F L+SI       +   R 
Sbjct: 233 -LSGYDLIAYWKEAFSLESRQK-------LRKLAQAVMVSLFPLVSIFLIPLFGIANPRF 284

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
           + +  +  +  S  +++   YI          I I  L+ F    ++   I + Y
Sbjct: 285 RSNMSYFYVIGSVALYFVLMYIASDNFALVGMISIPILWFFGGFFLYKKFIARFY 339


>gi|78776668|ref|YP_392983.1| permease YjgP/YjgQ [Sulfurimonas denitrificans DSM 1251]
 gi|78497208|gb|ABB43748.1| permease YjgP/YjgQ [Sulfurimonas denitrificans DSM 1251]
          Length = 359

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 101/362 (27%), Gaps = 9/362 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI     R F++  L +V        +     +     S N+ L    Y     + 
Sbjct: 2   LVFKYITFHYIRYFIIILLALVLFLVGFDYMGNTEKL---DISANLFLIYVVYKTFYAID 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+ P        +    + R+  L+   + G SRI ++KP + +A  +            
Sbjct: 59  MLLPLSLIFAMISTKIFLIRSNALVSFYSLGYSRIDILKPFVVVATAMITLFISL---HS 115

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
               +   + +   +    +     +LFF   D             + + I +    D  
Sbjct: 116 ISNFARADEFAKNIRKNAQYLSPTRDLFFTYKDKFVYFSKLLPLQESAENIRVFSFVDNS 175

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             ++  A+  S   D   I + D            + I   +   L+        ++ + 
Sbjct: 176 LKEVLVAKRASYRNDAWLIKMADIITKPDDISFDSLGIKVTQKDNLEILQGFRPKMLDQV 235

Query: 243 NDQNLSFLLNPNPNN---PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +  ++F +    +       +       +S  +K      F     +I           
Sbjct: 236 YEGKVNFSIKDAIDAYWLLRDQNINTNIVKSALYKIFVYPFFVPSLVVIIFFFVPVSVRF 295

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
                     I  S+    F      +   +  P  + I+   L          IK + +
Sbjct: 296 LNVSLFSFAAIISSLMIWAFLFSLVELSNHKTIPSELGIVLPNLLLFLFALRQWIKYRTS 355

Query: 360 KI 361
            I
Sbjct: 356 PI 357


>gi|254672901|emb|CBA07216.1| predicted permease [Neisseria meningitidis alpha275]
          Length = 124

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 38/120 (31%), Gaps = 2/120 (1%)

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L      +     +    Y   + ++L       +  L++     +     
Sbjct: 7   KPDQMSVGELT-TYIRHLQNNSQNTRIYAIAWWRKLVYPAAAWVMALVAFAFTPQTTRHG 65

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                    I L + F +   F     ++   P ++    L     + + + +I+K+  +
Sbjct: 66  NMGLKLFGGICLGLLFHLAGRFFGFTSQLYGIPPFLAG-ALPTIAFALLAVWLIRKQEKR 124


>gi|325954392|ref|YP_004238052.1| permease YjgP/YjgQ family protein [Weeksella virosa DSM 16922]
 gi|323437010|gb|ADX67474.1| permease YjgP/YjgQ family protein [Weeksella virosa DSM 16922]
          Length = 500

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 88/248 (35%), Gaps = 1/248 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + Y+L+     F      + FI  V    Q ++           + ++  Y+   V+
Sbjct: 3   KKLDGYVLKTFIGPFFFIFSILFFIFIVQFAWQEMDKYVGKGLDWLTIGELIFYMGINVI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +V P    + +           EL  +  +G S + ++  V  L  LLSI L+   + +
Sbjct: 63  QLVLPLTILLGSIMTFGGFGERYELAAMKASGLSLVRILSSVFVLVALLSIGLYHFGDKM 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-DSRD 180
            P  +   +Q+      A     + E +F        +K+++ + +N+ +   I    + 
Sbjct: 123 MPYSQRKARQIMFSVIEAKPTLQITEGVFSNNIPGFSMKVNRVDGDNSEKLTDIFIHQQL 182

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           ++T         +I+ D   II   G +       + + +  F   +      N S    
Sbjct: 183 SKTVLDENGNDINIEQDPLTIIAEKGILQVDKHNPRFLKLELFDGISYTEPLKNKSYEQR 242

Query: 241 KANDQNLS 248
           K  +   +
Sbjct: 243 KRQENQTT 250


>gi|332828499|gb|EGK01199.1| hypothetical protein HMPREF9455_02391 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 684

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 89/250 (35%), Gaps = 2/250 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    ++++     F M+ +  +FI  +  + + +  +      +++L ++  Y    ++
Sbjct: 5   KRLYTFVIQTFLPVFAMTFVICLFIVLMQFLWRYVEDLVGKGLDISVLAELFLYAAFQLI 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +     ++    ELL I  +G S +  +KP++ L   +SI  F  +N  
Sbjct: 65  PMALPLSLLLASLMAFGNLGERLELLSIKASGVSLLKAMKPLIILVAFISIGAFFFQNEA 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +  ++ L    +       + E  F+    +  + + K N    +    ++     
Sbjct: 125 MPRIQVKLRALLWSIKQKSPELDIPEGSFYSDIPNYNLYVKKKNRETKMLHEVMIYDTSK 184

Query: 182 QTHKI--YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
               +      S  +        L     H +   +   + +   S     + A  S   
Sbjct: 185 GFDNMAVIVCDSALMRGSEDKTFLLLNLYHGQQFANFRQADVNSTSSRNNNQFAPYSREN 244

Query: 240 LKANDQNLSF 249
            K  +  + F
Sbjct: 245 FKEKEVIIPF 254



 Score = 44.2 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
            + +  +  E H++ T     +IF  I    A   A++R+     P+ +S+++ F V++ 
Sbjct: 383 QKNIRFHEVERHRKFTLSFACLIFFFIG---APLGAIIRKGGLGMPVVVSVAL-FIVYYI 438

Query: 322 FSYIIHKIEQNPYYIPI--LYLFLFCISSIFLLMIKK 356
              I +K+ ++  +     ++L  F +  + + +  K
Sbjct: 439 IDNIGYKMARDGVWEAWQGMWLSSFALFPLGVFLTYK 475


>gi|163782091|ref|ZP_02177090.1| hypothetical protein HG1285_18199 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882623|gb|EDP76128.1| hypothetical protein HG1285_18199 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 357

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 103/355 (29%), Gaps = 13/355 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L    + F       V +  +  +   +  +     +L + LK + YLIP  
Sbjct: 1   MNIFDRYLLLNFLKVFSAISFVSVGLIVLYSLTDFL--LGFKETNLEVGLKYTLYLIPLG 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +++     +    +            + + G S +      +   ++LS         
Sbjct: 59  FYILSSLLVNIALIVLFRRFFSKGVDFTVQSFGISPLRFSAVFVGFTLVLSSLFLFLNES 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYNPNNTLQGIFIVD 177
             P     +  +    +       L E L+F         Y+ I   +  +       + 
Sbjct: 119 FLPGLFKRVWYIEKTYKKKQEIGRLVERLWFVKKTSFGKYYVYIGSLDVTSGKFAGLFML 178

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
              ++       +  S       I ++ G  +          + +F S + +   +    
Sbjct: 179 RVSSEGKVKEVVEGKSGRWSGNVIYVDRGSAYNFGEGYFVRELKEF-SLSAEIGISEIGL 237

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K      S L+N             + Y SE   R    + P+      +V      
Sbjct: 238 FAEKIQHVKSSSLINLYLKGGKL-GLDTDRYISEVLYRGGMSMLPL------VVLLPLLR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
            + + + +    +S  +   V W  +     +       P   L  + +   +LL
Sbjct: 291 DLFRYRSLRAGMLSFLVHLVVGWMVAVSPKLLADKANLSPGYALIAYSLLVPYLL 345


>gi|330443789|ref|YP_004376775.1| YjgP/YjgQ family protein [Chlamydophila pecorum E58]
 gi|328806899|gb|AEB41072.1| YjgP/YjgQ family protein [Chlamydophila pecorum E58]
          Length = 357

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/350 (12%), Positives = 105/350 (30%), Gaps = 9/350 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      ++    ++ L      +    +I  LQ I +  +       + +++ Y IP +
Sbjct: 1   MPILWKVLIFRYLKTILFC-ASSLIFISIISSLQEIVVYIAKDVPYATVFRLAAYQIPYL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP + P    +    +   ++ N ++  +  +G S+  +I P+L ++I +    F + + 
Sbjct: 60  LPFILPASCFISAYTLFKGLSDNNQITFLRASGASQGIIIFPILTISIAICCANFYTCSE 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +   CR    +  A   ++     L+            + I+  +   +     IV  + 
Sbjct: 120 LASICRYKSCKEIANMAMSSPPLLLQTLQKREDSR---VFIAVDHFAKSKFDNVIVALKR 176

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             T          I       +     V+     S   +     +     E+     I  
Sbjct: 177 DDTISDVGIIKAIIPDSEADTVQAKDVVYISKLPSSLSTPYTSPAQEYYIETVQELLIPK 236

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLET-----YRSEFHKRLTQWLFPVIFGLISIVAADK 295
                        +  +     +L+       Y  E  +R    L         IV    
Sbjct: 237 VTATLFSGKSFMKSRTDYLTWKQLVRQAFYRTYIPETLRRAAIGLLCFTLTYSGIVIGTY 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           +   R+   ++  F  L +   +    +           +  I+   +F 
Sbjct: 297 KPRFRKTHFLYFTFPILDLVLLIVGKNTKTTFMAFMFFLFPQIISWLVFI 346


>gi|317013268|gb|ADU83876.1| hypothetical protein HPLT_07455 [Helicobacter pylori Lithuania75]
          Length = 355

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/361 (11%), Positives = 101/361 (27%), Gaps = 9/361 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     + FL+  L +      I  L+  + +     S N+++    Y I   L 
Sbjct: 2   RLFKFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  ++ +   + + G S+  ++ P+  +++  +           
Sbjct: 59  YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  + L  K        +L             I        N         + ++ 
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDDYVYFDKINPLLQKAQNIKVFRLKDKTLESY 178

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                        +     I            +   + +K              TI    
Sbjct: 179 AEAKEAFFEYKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTIYQNK 238

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              +++  L  + +    +    +  RS         + P     +S++ A     + + 
Sbjct: 239 PAVSITDAL-LSLHALMRQNADTKKVRS---FLYVFAILPFFVPFLSVLIAYFSPSLARY 294

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLMIKKKYTK 360
           + +  + +   I   V WG  + + K   +   IP + +    F   ++ L   KK   +
Sbjct: 295 ENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLWYFKKLNKR 354

Query: 361 I 361
           +
Sbjct: 355 L 355


>gi|118474677|ref|YP_891476.1| permease YjgP/YjgQ [Campylobacter fetus subsp. fetus 82-40]
 gi|118413903|gb|ABK82323.1| permease YjgP/YjgQ [Campylobacter fetus subsp. fetus 82-40]
          Length = 353

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 101/351 (28%), Gaps = 7/351 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F  Y      + F++  + +      I  L  +     S     I L ++     T 
Sbjct: 1   MKLFSKYTGLVYLKYFIIIFMALELFYIGIDTLTNLKDFPKSANLQLIYLSLTAL---TA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P            +M R+ EL+   + G S+ TLI     ++++++       + 
Sbjct: 58  VNYVLPISLVFALIVSKINMIRSNELVSFYSLGISKNTLILSPFIISLIITCLYIYLSST 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                R               F+    ++F + ++        Y        I I +++D
Sbjct: 118 SFAYAR----DYQKSLINFQGFNKSSNSIFLKYENKFIYIDELYPAIGEANKIKIFETQD 173

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                   A+    + +   +   D               ++     L   S      + 
Sbjct: 174 GDIIGQITAKKAKFEDNSWKLFDVDIISLPPRLELNATGYIENTQKELLILSGFKPRTIE 233

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                N ++ +    ++                   +   FP+   L+ ++      +  
Sbjct: 234 NIYQTNSNYSITDAIDSLRTLKNEGINLNKIKSTLYSLIFFPLFAPLMVLILYYYLPITG 293

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +   +        I     WG  +++ +   N   IP + + L  I     
Sbjct: 294 RFFNLALASFIYVIVTLCIWGVLFVLIRFSLNGVIIPEIGVILPIIILASF 344


>gi|305667079|ref|YP_003863366.1| hypothetical protein FB2170_12551 [Maribacter sp. HTCC2170]
 gi|88708012|gb|EAR00250.1| hypothetical protein FB2170_12551 [Maribacter sp. HTCC2170]
          Length = 482

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 79/233 (33%), Gaps = 10/233 (4%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           +FI     I   I+ ++     + I+ K   YL+P +   V P    + +     ++  N
Sbjct: 1   MFIFIFQTIWLFIDDLAGKGLDIIIIGKFLFYLMPNLTEKVLPLTVLLSSILTFGTLAEN 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   +  +G S    +  ++   + L    F   N + P     I  L           
Sbjct: 61  YEFAAMKASGISLQRAMLSLIVFIVFLGGVTFYFANSVIPASEQKIYNLRRNIAKVKPAV 120

Query: 144 YLEENLFF-RLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ---THKIYYAQSGSIDLDRQ 199
            + E +F      D+ IK+ K +  N      +   + T+      +  A+SG +     
Sbjct: 121 AIVEGVFSDFEGADMNIKVDKKHGENDRFLENVTIHQKTKTKVNSTVIKAKSGELKSSET 180

Query: 200 AII----LNDGEVHRKSPISKD--ISIMKFKSYTLQTESANSSTIVLKANDQN 246
           + I    L DG  +R  P S     +   F     +T + N         D +
Sbjct: 181 SDILQLVLYDGHYYRDLPKSSKKAKNKHPFAKADFETYTMNIDLSEFNNVDMD 233



 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 50/136 (36%), Gaps = 7/136 (5%)

Query: 225 SYTLQTESANSSTIVLKANDQNLSFLLNPN---PNNPNYRPELLETYRSEFHKRLTQWLF 281
              L          ++ A   N S +LN           R E+   +    HK+    L 
Sbjct: 319 ENILDLYQDWQRIQLMGAAQTNASNILNSIQGKKKEFENRYEIYNRHIISLHKKYALALS 378

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LY 340
            VI   +    A   A++R+     P+ I++ +    ++   +  +  ++N  +  I  +
Sbjct: 379 CVILFFVG---APLGAIIRKGGIGLPMVIAIVLFLTYYFIGVFAENYAKKNEIHPIIGAW 435

Query: 341 LFLFCISSIFLLMIKK 356
           L    +  + +++ K+
Sbjct: 436 LSTMIMLPLSIVLTKR 451


>gi|308189157|ref|YP_003933288.1| hypothetical protein Pvag_3723 [Pantoea vagans C9-1]
 gi|308059667|gb|ADO11839.1| Uncharacterized protein [Pantoea vagans C9-1]
          Length = 204

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 69/188 (36%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEVPTNLVLTLLGLGVPQMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + L +  S+   ++   + 
Sbjct: 62  LILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMVLMLFTSVVAAVNVIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +++  A+     + +    F    D   +   +    N    +F+   R   
Sbjct: 122 PWSSRYQDEVTQNAKANPGAAAMAAGQFQTSSDGSAVLFVEDVKGNNFGNVFLAQLRPKG 181

Query: 183 THKIYYAQ 190
             +  +  
Sbjct: 182 NARPSWCW 189


>gi|254458642|ref|ZP_05072066.1| permease YjgP/YjgQ [Campylobacterales bacterium GD 1]
 gi|207084408|gb|EDZ61696.1| permease YjgP/YjgQ [Campylobacterales bacterium GD 1]
          Length = 355

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/358 (11%), Positives = 99/358 (27%), Gaps = 9/358 (2%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
             YI     + F +  + +V           +   SS + S N++L    Y     + M+
Sbjct: 3   FKYISFHYLKYFSVILIALVMFLVGFD---YMENASSLSSSANLVLIYLVYKAFFAIDML 59

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P             + R+  L+   + G SR+ ++KP + ++  + +            
Sbjct: 60  LPLSLIFAMITTKIFLIRSNALVSFYSLGYSRVDVLKPFVVVSTTIIVIFVSL---HAIP 116

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTH 184
             S   + S   +    +    ++LFF   D               +GI +   ++    
Sbjct: 117 SFSRADEFSNNIRKNAAYLSPTKDLFFTYKDKYIYFAQMLPLQERAEGIRVFSIKENSLK 176

Query: 185 KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
           ++  A+  +   +   I   D      +   +   I       L         ++ +  +
Sbjct: 177 EVLVAKEATYRNESWHIAQADVITKPDNMSFESKGIKVDHEKGLDILHGFRPKMLDQVYE 236

Query: 245 QNLSFLLNPNPNNPNY---RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             ++F +    +       +     + +   +K      F     +I        A    
Sbjct: 237 GKVNFTIKNAIDALLLLSDQNINTRSIKGALYKIFIYPFFVPCLVVIIFFFVPISARFLN 296

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
                   I  ++           +   +  P    ++   +           K +  
Sbjct: 297 VSLFSFGAILATLLVWGILFMLIELSNNKTIPSEAGVVAPVVILFLIALRQWRKYRLA 354


>gi|298207835|ref|YP_003716014.1| hypothetical protein CA2559_06260 [Croceibacter atlanticus
           HTCC2559]
 gi|83850473|gb|EAP88341.1| hypothetical protein CA2559_06260 [Croceibacter atlanticus
           HTCC2559]
          Length = 456

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 42/132 (31%), Gaps = 6/132 (4%)

Query: 227 TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
               E       +   N  N+  L++   N+       L  Y    H++        I  
Sbjct: 297 EYDLEGKLRVVTLAFNNMTNVGNLIDTRENSLKQINIKLNKYEIALHEKYVLAFACFILF 356

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--F 344
            +    A   A++R+     P+ I++ +     +   +  +   ++    P +  +L   
Sbjct: 357 FVG---APLGAIIRKGGMGLPMVIAILLFLTYHFIGIFAKNSA-EDGSISPFIATWLSTI 412

Query: 345 CISSIFLLMIKK 356
            +  + +    +
Sbjct: 413 IMLPLGVYFTYR 424



 Score = 50.0 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 83/250 (33%), Gaps = 7/250 (2%)

Query: 27  AWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTEL 86
             +  +   I+ ++       I+LK+  ++ P ++P+V P    + +     +   N E 
Sbjct: 1   MILQSVWLYISELAGRELDGFIILKLLSFVAPKLIPLVLPLTILVTSIMTFGNFAENYEF 60

Query: 87  LIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLE 146
             + ++G S    ++ ++     LSI  F   N + P+       L          + + 
Sbjct: 61  AAMKSSGISLQRAMRGLIIFIAALSITAFFFANNVIPRAEFEFVNLRKNIAKLKPAAAIS 120

Query: 147 ENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT---QTHKIYYAQSGSIDLDRQAIIL 203
           E +F  + D       K           I+  ++      + +  A  G +     + +L
Sbjct: 121 EGMFNEIGDINIKVGEKSGDRGQYLTDVIIHKKNEKRAGNYTVIKANKGELISSEGSDVL 180

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPE 263
           +          +    I       +Q +    S     A + +LS L N +  + NY   
Sbjct: 181 SLV----LRDGNYYDEIQSNDPKEIQKKPFAKSYFKEYAINVDLSTLNNVDMEDRNYTGG 236

Query: 264 LLETYRSEFH 273
                 SE  
Sbjct: 237 SNMLKISELQ 246


>gi|330890525|gb|EGH23186.1| hypothetical protein PSYMO_17668 [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 146

 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 41/138 (29%), Gaps = 15/138 (10%)

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
           ++K+ +Y         S  +        S L                   +E   R++  
Sbjct: 1   MIKYDTYGAMLPKPEISEEITDREAIPTSEL----------TGNPAPRSVAELQWRISLP 50

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIP 337
           L   I  L++I       +  ++ +   +  ++ +          +   +   + P  + 
Sbjct: 51  LSVFIVTLMAIPL---SRVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLG 107

Query: 338 ILYLFLFCISSIFLLMIK 355
           + ++    +S   LL   
Sbjct: 108 MWWVHGIYLSIGLLLFYW 125


>gi|15605868|ref|NP_213245.1| hypothetical protein aq_359 [Aquifex aeolicus VF5]
 gi|14916753|sp|O66685|Y359_AQUAE RecName: Full=Uncharacterized protein aq_359
 gi|2983036|gb|AAC06646.1| putative protein [Aquifex aeolicus VF5]
          Length = 356

 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/361 (11%), Positives = 105/361 (29%), Gaps = 8/361 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+L      FL      V +  +  +L  +           + L     ++P    
Sbjct: 2   LLDRYLLSRFLGIFLNVSFVSVLLVSLYALLDFLVGFKEKRTD--VALSYFLNILPLGFY 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            ++    ++     L  +      L + + G S +    PVL  ++ LS    +      
Sbjct: 60  YISFITLSISLILFLRKVFEKKMELTVQSFGISPLRFSLPVLLFSVFLSSTFLLGNEYAF 119

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN--TLQGIFIVDSRD 180
           PK    +  +    +         +N +F   ++           N            + 
Sbjct: 120 PKLLGNLWFIEKNYKKKQEVKGFIKNFWFIKKENEVKTYYHVGNLNLSDGSLFNFYTMKV 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            + +              +   +                 +  K++ L            
Sbjct: 180 ERKNLNPLEVLKVFSGVWKDKEIFIRSGEIYDFEKGKREKVFNKTFKLGLSIKEVELFSE 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  +LS +      +       ++ Y  E   R+   L PV   + S+    K  ++ 
Sbjct: 240 KIDFLSLSEIFFLMQKSKKV-GLNVDVYTGELFYRVMFSLSPVFISIFSLYLFFKHKVL- 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
              ++ P F+   +   +      I+ +    P    ++ +FL  + S+  +   +K  +
Sbjct: 298 --SQVIPRFLVFIVILWLVILSPKILPQKANQPVLYSLIPIFLLILYSLKGVYDLRKGFR 355

Query: 361 I 361
           +
Sbjct: 356 V 356


>gi|229495721|ref|ZP_04389449.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
 gi|229317295|gb|EEN83200.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
          Length = 658

 Score = 50.4 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 46/145 (31%), Gaps = 8/145 (5%)

Query: 213 PISKDISIMKFKSYTLQTESANSSTIVLKAND--QNLSFLLNPNPNNPNYRPELLETYRS 270
                   +   S           T +  A++   N++ L                ++  
Sbjct: 338 EQGAKRQQITLDSLYRMASPEQLETALKNASEKLHNMTELATFWDGAYQAEAYNFRSHSQ 397

Query: 271 EFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE 330
           E H++ T  +  ++F  I +        +R+     P+  S+ + F V++    +   + 
Sbjct: 398 ERHRKFTFPVACIVFFFIGVPLGAL---IRKGGIGMPMVASILL-FVVYYMIDTLGFNLS 453

Query: 331 QNPYYIPI--LYLFLFCISSIFLLM 353
            N  +     ++   F +  I   +
Sbjct: 454 YNGTWPTWLGMWFSTFILLPIGAFL 478


>gi|91204945|ref|YP_537300.1| putative permeases [Rickettsia bellii RML369-C]
 gi|91068489|gb|ABE04211.1| Putative permeases [Rickettsia bellii RML369-C]
          Length = 362

 Score = 50.4 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/361 (8%), Positives = 99/361 (27%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + F +    ++ +  +  +   +    +     +   +   Y +P +
Sbjct: 4   LKTLSWYLAKLYFKCFFIILSILIGLLIISNLFDLLQKFKNMYVPFDFFWRFILYKVPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ +N EL  I ++G     ++     + ++L I      N 
Sbjct: 64  LNQVSALISFTSMLFFLRNLTKNNELTAILSSGIHIWQVLIIPYIVTLILGIVFTTILNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS----KYNPNNTLQGIFIV 176
           I          L AK         +         + L  K      ++   +  +   I 
Sbjct: 124 IGALGLQKYDLLEAKLTKKTHNEAVISKSGLLFFEALNGKNQIIQTQFINISEKKLNNIT 183

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  +           +     +  +         ++  + +   +        +  
Sbjct: 184 VLFIDNNNNFLKRIDALYGIIENKSLHLNRVKVFTKDSTEAHNNL---TIPTNLSVNSLV 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                    ++  L     +        +  Y+  ++K+L +    +   +++      +
Sbjct: 241 NKFTHPEMVSIWKL-PKLIDELLNSGLPITNYQVYYYKQLFKPAMMIATIILASCFISLK 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                ++KI  + +               +           IL   +        +++  
Sbjct: 300 QRDNSQEKILILGLFSGFIVYSLSEILLKVLTYNNLSLIAAILLPSMLIFFISNFIILHY 359

Query: 357 K 357
           K
Sbjct: 360 K 360


>gi|157827727|ref|YP_001496791.1| putative permeases [Rickettsia bellii OSU 85-389]
 gi|157803031|gb|ABV79754.1| Putative permeases [Rickettsia bellii OSU 85-389]
          Length = 362

 Score = 50.4 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/361 (8%), Positives = 99/361 (27%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + F +    ++ +  +  +   +    +     +   +   Y +P +
Sbjct: 4   LKTLSWYLAKLYFKCFFIILFILIGLLIISNLFDLLQKFKNMYVPFDFFWRFILYKVPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ +N EL  I ++G     ++     + ++L I      N 
Sbjct: 64  LNQVSALISFTSMLFFLRNLTKNNELTAILSSGIHIWQVLIIPCIVTLILGIVFTTILNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS----KYNPNNTLQGIFIV 176
           I          L AK         +         + L  K      ++   +  +   I 
Sbjct: 124 IGALGLQKYDLLEAKLTKKTHNEAVISKSGLLFFEALNGKNQIIQTQFINISEKKLNNIT 183

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  +           +     +  +         ++  + +   +        +  
Sbjct: 184 VLFIDNNNNFLKRIDALYGIIENKSLHLNRVKVFTKDSTEAHNNL---TIPTNLSVNSLV 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                    ++  L     +        +  Y+  ++K+L +    +   +++      +
Sbjct: 241 NKFTHPEMVSIWKL-PKLIDELLNSGLPITNYQVYYYKQLFKPAMMIATIILASCFISLK 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                ++KI  + +               +           IL   +        +++  
Sbjct: 300 QRDNSQEKILILGLFSGFIVYSLSEILLKVLTYNNLSLIAAILLPSMLIFFISNFIILHY 359

Query: 357 K 357
           K
Sbjct: 360 K 360


>gi|315452594|ref|YP_004072864.1| Integral membrane protein [Helicobacter felis ATCC 49179]
 gi|315131646|emb|CBY82274.1| Integral membrane protein [Helicobacter felis ATCC 49179]
          Length = 348

 Score = 50.0 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 108/314 (34%), Gaps = 14/314 (4%)

Query: 44  ESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPV 103
            S   LL++  YL+P  L  + P  F       L  ++ + ELL+  + G +   +++  
Sbjct: 44  LSALDLLQLYFYLLPGTLFFIIPITFFGACVIGLARLSYDHELLVFFSLGIAPRQIVRAF 103

Query: 104 LFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK 163
           L L +++S  L +   I+ P  +S         +  +  +        +L D L      
Sbjct: 104 LPLCLVVSALLLVFSLILVPASKSAYYSFLRDKKERVDVNIQAGEFGQKLGDWLVYV--G 161

Query: 164 YNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF 223
            + N     + +       T     A+ G I        L     +        +  + F
Sbjct: 162 KSQNGVFGDLVLFSHSGLSTESFIIAKEGRIRNQNGLFELELDHGNAYFAAKGQVRKVHF 221

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
           K   L+ + A         +++  +  L  +     +         +   +R TQ +   
Sbjct: 222 KELILKNKPA--------LSERKDAAYLYGHDFIGYWGKAFGAHPNAHQQRRFTQAILVA 273

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +F L S+       +   R   +  ++ + I+ G+++   +II +       I +  +++
Sbjct: 274 LFPLASLFCIPLFGIANPRYAKNLSYVYVLITTGIYFLLMHIISQDFPLVGTISLPIVWM 333

Query: 344 FCISSIFLLMIKKK 357
                    + + K
Sbjct: 334 LG----SYWLYRYK 343


>gi|153875332|ref|ZP_02003181.1| permease YjgP/YjgQ [Beggiatoa sp. PS]
 gi|152068203|gb|EDN66818.1| permease YjgP/YjgQ [Beggiatoa sp. PS]
          Length = 218

 Score = 50.0 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 57/186 (30%), Gaps = 17/186 (9%)

Query: 161 ISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDI 218
           +   +  +       V         I  A  G   I      ++L DG  +   P + + 
Sbjct: 1   MENIDNESNTMQTLFVQVNLPHKRVIMVADRGYQVIQEGELFMVLIDGYRYESPPGALNY 60

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
            + +F  + ++      +    + +      L                + ++E   RL+ 
Sbjct: 61  IVTQFAEHRIRVPKRLDTPKNDRRDAIPTDLLWFAKE----------PSLQAELQWRLSL 110

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYI 336
            L  +   L++ +A        ++ +   I   + I        +     +E+   P +I
Sbjct: 111 PLTVI---LLAALAVPLSHTTPRQGQYAKILFGILIYLIYNNLLNVAKKWVERGDVPPWI 167

Query: 337 PILYLF 342
            + ++ 
Sbjct: 168 GVWWVH 173


>gi|283955738|ref|ZP_06373229.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792693|gb|EFC31471.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 352

 Score = 50.0 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/361 (11%), Positives = 93/361 (25%), Gaps = 13/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    ++     I +L     +     + N+ L    +L  + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPK---AANLDLLYVMFLSFSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E + +   G SR  +I      A+            
Sbjct: 58  VPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCVYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    +       +    + + ++    L  +          N       I     
Sbjct: 118 SFAYANDYKR------NILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNI 171

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI----SKDISIMKFKSYTLQTESANSS 236
              +   +  + +   + ++ IL DG +          +  + I  F             
Sbjct: 172 NDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPKI 231

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              + +N          +      +    +  +   +K +    F     LI        
Sbjct: 232 IEGVASNSDYSISDALESFELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFFPVI 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           A       +  I   +++           + +       I I+   +        +  K 
Sbjct: 292 ARFFNLAIVTFIAFVVTLMIWGILFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYKH 351

Query: 357 K 357
           +
Sbjct: 352 R 352


>gi|114569776|ref|YP_756456.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
 gi|114340238|gb|ABI65518.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
          Length = 365

 Score = 50.0 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 43/344 (12%), Positives = 106/344 (30%), Gaps = 7/344 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
               Y+        L++ L I  +  ++  +++   V +    S   LL ++    P +L
Sbjct: 5   RLNRYMASQTAGGLLLAFLTIATVIILVDFVEQSRAVGTRVDVSTLDLLGLTLLRAPALL 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF F   T   L  +NR++EL+++  +G S   ++   + LA+ + I      N +
Sbjct: 65  ESTLPFVFLFGTLTSLFRLNRSSELIVMRASGISAWRILTAPMVLAVGIGIIGATGLNPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
                +  +               E+ ++ R  +     +         + +        
Sbjct: 125 AATLNAEFEARRDSLMNVRRVEGAEQPVWLRETNIDGFTVIAATQLEEARQVLRNPVFLQ 184

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI--- 238
                         +D ++  L  G       I +  +  +     +   ++ +      
Sbjct: 185 FAEDASGTPRLERRIDAESAELRAGFWEVTGAIERTPTPSRLDLGAIAMPTSINRQALFE 244

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             ++ +    + L     +        + Y    H  L   L  +   LI+  A      
Sbjct: 245 RARSAEGVAFWDLPRLITSAREAGLATQRYELRLHALLALPLTLLASTLIAAAATL---R 301

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           + +        ++  I+  V + F  ++     +    P    +
Sbjct: 302 LHRLGGAAAFAMAGGIAGFVMFFFQEMLSSFGVSGALPPATAAW 345


>gi|315636695|ref|ZP_07891925.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315479010|gb|EFU69713.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 338

 Score = 49.6 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 123/356 (34%), Gaps = 19/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+   +  +F      + FI  VI +++   L +  T +   L +I  Y IP ++ 
Sbjct: 2   KLQRYLYSQLAITFFPIFFGLFFITAVIFLVKISALTAIITVNFFELFRIFSYTIPDIIF 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P  F +     L+ ++   EL +I + G +   ++K  L L +LL++ L +    + 
Sbjct: 62  YTMPISFFISMVITLSKLSSEYELTVITSFGLNPFKILKIFLPLTLLLTLLLLVVSVGLI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           PK     KQ     +    F+        +  D L     K N       +         
Sbjct: 122 PKTDFERKQFVNIKKNEANFNIKSGEFGQKFGDWLIFINDKKNNLYEDVKLL---KVQND 178

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             +   +++  +D D+  + +   E        ++ + + +++  +    +++ T V   
Sbjct: 179 NDQFVISKNAVLDNDKGVLSIRLAEGKAFLIEKEEFNQINYEAMYINDSISSAKTTVFTT 238

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
                   +    +  +                LT ++    F L+S+           R
Sbjct: 239 TYDYWKDNIKNKVDLDD----------------LTFFILTSFFPLMSLFLVITFGYFNPR 282

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            + +   +   IS  +++     I           I  L+L     ++   IKK+Y
Sbjct: 283 YEKNRAIMYSLISIVLYYVLIKSIGDKIFLHTLYIIPILWLSGTYFLYSKTIKKEY 338


>gi|33519519|ref|NP_878351.1| putative inner membrane protein [Candidatus Blochmannia floridanus]
 gi|33517182|emb|CAD83564.1| putative inner membrane protein; predicted permease [Candidatus
           Blochmannia floridanus]
          Length = 370

 Score = 49.6 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 118/356 (33%), Gaps = 13/356 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI++ I ++ L+  + ++   +  + ++ ++L  S+   +  +       IP +  
Sbjct: 2   ILIKYIMKEICKNQLIILILLLLACFCQKSIKVLSL--SNNIPIYWIFLYLFLSIPDLGK 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ PF   +        ++ + E+L + +   ++  LI+ +   + +++I   I+   + 
Sbjct: 60  LIIPFSLFLSVLISCYRLHMHNEILAMYSCAVNKYVLIQSICMYSTVIAILSLINLAYLA 119

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P C    + +  K +    F  L E  F+ L D+  +       N  L  +FI+      
Sbjct: 120 PHCEQYKENIFFKMKKNTYFIELIEKKFYLLFDEHLVLFIDNIKNGMLNHVFILKRVQNI 179

Query: 183 THKIYYAQSG-----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
              ++   +        + + ++ ++           +  +  +                
Sbjct: 180 DKNVFSIITADQGSIHYNFNDKSQLIILQSGMYYEIHNTQLLCIPRFVTYFNQYRTLVHD 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                 D N S     + N              E + RLT ++   I  +I++      A
Sbjct: 240 KYQFLRDVNKSV---KHMNINQLLISSELESYIELNWRLTLFISVFIMPMIALFVMMNIA 296

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                   + +   +   F            +      I ++++       I LLM
Sbjct: 297 Y---GYLSNFLLAVVLYVFFYMLHIMLYTCSVLNYMNIIILMWIINCIYLIILLLM 349


>gi|301346544|ref|ZP_07227285.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB056]
          Length = 164

 Score = 49.6 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 8/148 (5%)

Query: 203 LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP 262
           L  G  +   P     +  +F+SY L+ E+           +   +  L    N+P    
Sbjct: 6   LVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKDVKFESGDVEALSTSKLFSKANDPV--- 62

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
                 RSE   RL      +I  ++S+  ++      +  ++ P     +    +    
Sbjct: 63  -----VRSELGWRLFGPFTIIIALMLSVALSEVSPRQGRYYRLIPSIFIFASLIVLMIAI 117

Query: 323 SYIIHKIEQNPYYIPILYLFLFCISSIF 350
              I K E + +  P+  L     +++F
Sbjct: 118 KTRISKGELDIWAYPVALLVYAIAAALF 145


>gi|332520665|ref|ZP_08397127.1| permease YjgP/YjgQ family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332044018|gb|EGI80213.1| permease YjgP/YjgQ family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 540

 Score = 49.6 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/113 (8%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
           + + ++     N   +   L  +    H++    L  +I   +          +R+    
Sbjct: 318 STTQIIQSKEANLKTKSNWLNRHIIALHEKFALALACIILFFVGAPLGAL---IRKGGLG 374

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIKK 356
            P+ I++ +     +   +  +   ++  + P L  +     +  + + + ++
Sbjct: 375 LPMVIAIVLFLTYHFIGIFAKNSA-KDGTFNPALATWFSTLIMLPLSIYLTRR 426



 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 94/269 (34%), Gaps = 16/269 (5%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           + I  +  I   I  ++        ++K   Y+ PT++P++ P    + +  V  +   N
Sbjct: 1   MLIFVLQAIWLYIKELAGKDLDPATIVKFLFYITPTLIPLILPLTILLASIMVFGNFAEN 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   + +TG S    +  +    + LSI  F   N + P        L           
Sbjct: 61  YEFAAMKSTGISLQRAMSGLSVFIVALSITTFFFSNNVIPWAEYNSFNLRKNIAKVKPAM 120

Query: 144 YLEENLFFRLDDDLYIKISKYN----PNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ 199
            + E  F ++ +   IK+SK             I           K   A++G +    +
Sbjct: 121 AIAEGQFNQIGEGFNIKVSKKTGDRGQFLEKVVIHQGQKSKPGNFKTIIAENGELVSAEK 180

Query: 200 AI----ILNDGEVHRKSPISKDISIMK-------FKSYTLQTESANSSTIVLKANDQNLS 248
           +     IL +G  +  +P       ++       F  YT+  + +  + + L     +  
Sbjct: 181 SDILKLILFNGYYYDDTPPKDYKERLRKPFAKSIFDKYTMNIDLSQLNAVDLDDKSTDNK 240

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLT 277
           + +  N +  NY  + L T R E ++   
Sbjct: 241 YSM-LNISQLNYTTDSLHTERQEVYELFA 268


>gi|157414610|ref|YP_001481866.1| hypothetical protein C8J_0290 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385574|gb|ABV51889.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|315931610|gb|EFV10576.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 352

 Score = 49.6 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/361 (11%), Positives = 93/361 (25%), Gaps = 13/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    ++     I +L     +     + N+ L    +L  + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPK---AANLDLLYVMFLSFSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E + +   G SR  +I      A+            
Sbjct: 58  VPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    +       +    + + ++    L  +          N       I     
Sbjct: 118 SFAYANDYKR------NILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNI 171

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI----SKDISIMKFKSYTLQTESANSS 236
              +   +  + +   + ++ IL DG +          +  + I  F             
Sbjct: 172 NDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPKI 231

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              + +N          +      +    +  +   +K +    F     LI        
Sbjct: 232 IEGVASNSDYSISDALESFELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFFPVI 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           A       +  I   +++           + +       I I+   +        +  K 
Sbjct: 292 ARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYKH 351

Query: 357 K 357
           +
Sbjct: 352 R 352


>gi|291298015|ref|YP_003509293.1| hypothetical protein Snas_0485 [Stackebrandtia nassauensis DSM
           44728]
 gi|290567235|gb|ADD40200.1| hypothetical protein Snas_0485 [Stackebrandtia nassauensis DSM
           44728]
          Length = 623

 Score = 49.2 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 2/84 (2%)

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISL--SISFGVFWGFSYIIHKIEQNPYYIP 337
              V   LI  +A  + A    ++ I  +  ++   I FGV                   
Sbjct: 417 WAVVALPLIGTIAMLRPASAGFKRLISAVLAAVINVIVFGVAAAVYLFAVSQILAASLPG 476

Query: 338 ILYLFLFCISSIFLLMIKKKYTKI 361
            L + L  +      M+ + Y +I
Sbjct: 477 WLQVLLIGLIGAVAWMLLRPYRRI 500


>gi|121612521|ref|YP_001000023.1| hypothetical protein CJJ81176_0335 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87250256|gb|EAQ73214.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 352

 Score = 49.2 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 41/361 (11%), Positives = 94/361 (26%), Gaps = 13/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    ++     I +L     +     + N+ L    +L  + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPK---AANLDLLYVMFLSFSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E + +   G SR  +I      A+            
Sbjct: 58  VPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    +       +    + + ++    L  +          N       I     
Sbjct: 118 SFAYANDYKR------NILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNI 171

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI----SKDISIMKFKSYTLQTESANSS 236
              +   +  + +   + ++ IL DG +          +  + I  F             
Sbjct: 172 NDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPKI 231

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              + +N          +      +    +T +   +K +    F     LI        
Sbjct: 232 IEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFFAPFLMLIMYYFFPVI 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           A       +  +   +++           + +       I I+   +        +  K 
Sbjct: 292 ARFFNLAIVTFVTFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYKH 351

Query: 357 K 357
           +
Sbjct: 352 R 352


>gi|86149085|ref|ZP_01067317.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597305|ref|ZP_01100540.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218561972|ref|YP_002343751.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85840443|gb|EAQ57700.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190366|gb|EAQ94340.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359678|emb|CAL34464.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|284925585|gb|ADC27937.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315928386|gb|EFV07700.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315930530|gb|EFV09573.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 352

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/361 (11%), Positives = 95/361 (26%), Gaps = 13/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    ++     I +L     +     + N+ L    +L  + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPK---AANLDLLYVMFLSFSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E + +   G SR  +I      A+            
Sbjct: 58  VPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    +       +    + + ++    L  +          N       I     
Sbjct: 118 SFAYANDYKR------NILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNI 171

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI----SKDISIMKFKSYTLQTESANSS 236
              +   +A + +   + ++ IL DG +          +  + I  F             
Sbjct: 172 NDLNLSSFASAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPKI 231

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              + +N          +      +    +T +   +K +    F     LI        
Sbjct: 232 IEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFFAPFLMLIMYYFFPVI 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           A       +  I   +++           + +       I I+   +        +  K 
Sbjct: 292 ARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYKH 351

Query: 357 K 357
           +
Sbjct: 352 R 352


>gi|86151428|ref|ZP_01069643.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|86153749|ref|ZP_01071952.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|315123881|ref|YP_004065885.1| hypothetical protein ICDCCJ07001_285 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841775|gb|EAQ59022.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85842710|gb|EAQ59922.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|307747250|gb|ADN90520.1| Putative membrane protein [Campylobacter jejuni subsp. jejuni M1]
 gi|315017603|gb|ADT65696.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 352

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/361 (11%), Positives = 93/361 (25%), Gaps = 13/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    ++     I +L     +     + N+ L    +L  + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPK---AANLDLLYVMFLSFSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E + +   G SR  +I      A+            
Sbjct: 58  VPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    +       +    + + ++    L  +          N       I     
Sbjct: 118 SFAYANDYKR------NILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNI 171

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI----SKDISIMKFKSYTLQTESANSS 236
              +   +  + +   + ++ IL DG +          +  + +  F             
Sbjct: 172 NDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKLQDFSELKSLEGFKPKI 231

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              + +N          +      +    +  +   +K +    F     LI        
Sbjct: 232 IEGVASNSDYSISDALESFELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFFPVI 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           A       +  I   +++           + +       I I+   +        +  K 
Sbjct: 292 ARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYKH 351

Query: 357 K 357
           +
Sbjct: 352 R 352


>gi|205356037|ref|ZP_03222805.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205346161|gb|EDZ32796.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 352

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/361 (11%), Positives = 94/361 (26%), Gaps = 13/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    ++     I +L     +     + N+ L    +L  + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPK---AANLDLLYVMFLSFSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E + +   G SR  +I      A+            
Sbjct: 58  VPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    +       +    + + ++    L  +          N       I     
Sbjct: 118 SFAYANDYKR------NILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNI 171

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI----SKDISIMKFKSYTLQTESANSS 236
              +   +  + +   + ++ IL DG +          +  + I  F             
Sbjct: 172 NDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPKI 231

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              + +N          +      +    +T +   +K +    F     LI        
Sbjct: 232 IEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFFAPFLMLIMYYFFPVI 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           A       +  +   +++           + +       I I+   +        +  K 
Sbjct: 292 ARFFNLAIVTFVAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYKH 351

Query: 357 K 357
           +
Sbjct: 352 R 352


>gi|153951775|ref|YP_001398642.1| hypothetical protein JJD26997_1652 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939221|gb|ABS43962.1| putative membrane protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 352

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/361 (11%), Positives = 90/361 (24%), Gaps = 13/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    ++     I +L     +     + N+ L    +L  + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPK---AANLDLLYVMFLSFSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E +     G SR  +I      A+            
Sbjct: 58  VPYVLPISLIFALVVSLISMIRANEFVSFYALGLSRNYVILFPFLWALFFCCIYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    +       +    + + ++    L  +          N       I     
Sbjct: 118 SFAYANDYKR------NILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNI 171

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGE----VHRKSPISKDISIMKFKSYTLQTESANSS 236
              +   +  + +   + ++ IL DG            +  + I  F             
Sbjct: 172 NDFNLSSFVSAKNAHFEGESWILRDGNIALLPKNYELANDGLKIQDFSELKSLEGFKPKI 231

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              + +N          +      +    +  +   +K +    F     LI        
Sbjct: 232 IEGVASNSDYSISDALESFELFKAQNVNTDALKINLYKFIFTPFFAPFLMLIMYYFFPVI 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           A       +  I   + +           + +       I I+   +        +  K 
Sbjct: 292 ARFFNLAFVTFIAFVVILMVWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYKH 351

Query: 357 K 357
           +
Sbjct: 352 R 352


>gi|270295684|ref|ZP_06201885.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274931|gb|EFA20792.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 617

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 71/195 (36%), Gaps = 6/195 (3%)

Query: 12  IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAM 71
              +F +       I  +  + + ++ +      + +L +   Y   +++P   P    +
Sbjct: 3   FMGTFFICLF----IFMMQFLWRYVDEMVGKGLEMTVLAQFFFYSALSLVPASLPLAILL 58

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
                  +     ELL +   G S + +++P++     +    F  +N+I PK ++ +  
Sbjct: 59  AALITFGNFGERFELLAMKAAGISLLKIMRPLIIFICFICCVSFYFQNVIGPKAQTKLWT 118

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ--THKIYYA 189
           L    +       + E +F+   D   + +   N    +    ++ + +      +I  +
Sbjct: 119 LLISMKQKSPEVDIPEGVFYDEIDGYNLYVKHKNRKTGMLYDVLIYNFEKGFENAQIIKS 178

Query: 190 QSGSIDLDRQAIILN 204
            SG +++      L 
Sbjct: 179 DSGRLEMTADKQHLY 193


>gi|295917939|gb|ADG60246.1| permease YjgP/YjgQ [uncultured bacterium]
          Length = 122

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 39/101 (38%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YILR +        +    +  + ++L+    VS+    + ++ ++   L+P    +
Sbjct: 22  IDRYILRLVLVPMFGVFILAASLLMLEKMLRLFEFVSTQGGPVQVVFRMLVNLVPEYAGL 81

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVL 104
             P    +        +  ++EL ++   G S   L++   
Sbjct: 82  AIPLGLMLGILLAFRKLATSSELDVMRAVGMSYSRLLRVPY 122


>gi|32266101|ref|NP_860133.1| hypothetical protein HH0602 [Helicobacter hepaticus ATCC 51449]
 gi|32262150|gb|AAP77199.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 339

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 124/355 (34%), Gaps = 17/355 (4%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           F+ Y+     + F    L ++FIA V+ ++           S   L  +  YLIP  L  
Sbjct: 2   FKRYLFMSFAQIFFPFFLVLLFIASVVLLIDIAGRTYVIKMSFIDLGTLFLYLIPGSLFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       +  +  + EL++  + G   + ++K  L + +L +I LF+   ++ P
Sbjct: 62  IIPITFFAALVLSVAKLTYDYELMVCFSLGAKPLDIVKFFLPITLLATIILFVFSLVMLP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
              S  K   A+ +  +  +        +L D L             + + +      + 
Sbjct: 122 LANSASKNFVAQKKADIDVNIKSGEFGQKLGDWLVYV--DSAHKRIYKNLILFSENGFEG 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
                A+SG  + ++    LN  E        +++  + +   +++   +          
Sbjct: 180 DTFIVAESGKTNNNQGLFELNLQEGSAYFASPEELKRVDYHQMSVRQNVSEPQLRSYDLF 239

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
           +   +   + +   P               ++L Q +   +F L S+       +   R 
Sbjct: 240 EYWGNVFTSDSHQKP---------------RKLAQAVMVSLFPLTSLFLVPLFGIANPRF 284

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +  +  +  S  +++  ++I  +       I I +L+      ++   I K Y
Sbjct: 285 HSNMSYFYVIASVALYFVLTHIASEHFPLIGMIIIPFLWCALSFGLYKKFITKFY 339


>gi|315057734|gb|ADT72063.1| Permease YjgP/YjgQ [Campylobacter jejuni subsp. jejuni S3]
          Length = 352

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/361 (11%), Positives = 93/361 (25%), Gaps = 13/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    ++     I +L     +     + N+ L    +L  + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPK---AANLDLLYVMFLSFSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E + +   G SR  +I      A+            
Sbjct: 58  VPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    +       +    + + ++    L  +          N       I     
Sbjct: 118 SFAYANDYKR------NILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNI 171

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI----SKDISIMKFKSYTLQTESANSS 236
              +   +  + +   + ++ IL DG +          +  + I  F             
Sbjct: 172 NDLNLSSFVSAKNAYFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPKI 231

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              + +N          +      +    +  +   +K +    F     LI        
Sbjct: 232 IEGVASNSDYSISDALESFELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFFPVI 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           A       +  I   +++           + +       I I+   +        +  K 
Sbjct: 292 ARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYKH 351

Query: 357 K 357
           +
Sbjct: 352 R 352


>gi|327537720|gb|EGF24427.1| hypothetical protein RBWH47_05036 [Rhodopirellula baltica WH47]
          Length = 430

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 62/208 (29%), Gaps = 5/208 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS---TESLNILL-KISGYL 56
           M   + Y+L    R+  +  L +  I  V      ++ + +     +SL ++L K  G  
Sbjct: 1   MTQIDRYVLILFLRTVCVCFLSLAGIFIVFHAFTAMDDLIAQSKVGDSLPLVLAKFYGPY 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +  +  M       M        + R  EL    + G S   +++P++  ++ +      
Sbjct: 61  LLLLFDMTGTIITLMAFLFTAGWLRRTGELTATLSAGVSHGRILRPMIIASLAIISVQLA 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           +   + P+ R ++   +           +           +     +       +  F +
Sbjct: 121 NREWVIPRFRDSLTMKAKNL-SGDIEQAVMPTYDQSSGILIEGDKLRTLGRVISRPNFRL 179

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILN 204
            S       +  A+              
Sbjct: 180 YSEYAGFGDVLLAREAIWWDPEAMAEWR 207


>gi|237718006|ref|ZP_04548487.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452647|gb|EEO58438.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 380

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                        +  +N++  L             +  +++E+HK++T  L  ++F  I
Sbjct: 78  SLTQKQKVISSAVSRAENVANDLGFKKFTMENNDYSIRKHKTEWHKKITISLSCLLFFFI 137

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCI 346
               A    ++R+     P+ +S+ + F +++      +K+ ++  +I  + ++     +
Sbjct: 138 G---APLGGIIRKGGLGMPVIVSV-LVFIIYYIIDNTGYKMARDGKWIVWMGMWTSSAVL 193

Query: 347 SSIFLLMIKK 356
           + + + +  K
Sbjct: 194 APLGVFLTYK 203


>gi|320449377|ref|YP_004201473.1| putative permease, YjgP/YjgQ family [Thermus scotoductus SA-01]
 gi|320149546|gb|ADW20924.1| putative permease, YjgP/YjgQ family [Thermus scotoductus SA-01]
          Length = 368

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/377 (12%), Positives = 107/377 (28%), Gaps = 32/377 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   ++L+      L++ LF+  +            +      L  + +   Y +P VL 
Sbjct: 2   TLYRHLLKESLPVLLLALLFLTAVYLFGFFYAGARWL--EGVPLWKVARWLSYHVPGVLV 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P      T  V   ++       + + G        P++ +  LLS      +  + 
Sbjct: 60  QVFPIALVTTTVLVFGRLSAEGAQFALLSGGVPLWRAALPLVGIGALLSGVALYLQERLV 119

Query: 123 PKCRST-IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           P            +        +  + L   +     +    ++          + S   
Sbjct: 120 PHYNEKVRVAWWDEIHTQGAGLFRLKGLQIPIGKGRNLYFEDFDMEKKEMVGVRIASFQG 179

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS------------------KDISIMKF 223
           +     +A+ GS   + + I L D    R                       + +S  K 
Sbjct: 180 EEGTFLFAERGSW--EDKRITLRDYRFFRIDFQEIPRLETASDLLAQTRKVFRVVSQGKI 237

Query: 224 KSYTLQTESANSSTIVLKAND--QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
                    A +           Q+          +P   P      R EFH +L   L 
Sbjct: 238 MEVESDLSRARAIADYADTFSFGQDSLSEAWAKMRDPFLAPLEKWQARLEFHSKLALPLA 297

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILY 340
            ++      +     A+  +  +   + + LS+   + ++G  ++   +       P + 
Sbjct: 298 NLV------LVLLAVAMALKYGRSTGLALGLSVVLALGYYGVFFLGRSLAGIGALPPEVG 351

Query: 341 LFLFCISSIFLLMIKKK 357
            +   +  + L +   +
Sbjct: 352 AWGANLLFLLLGIRALR 368


>gi|213421645|ref|ZP_03354711.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 128

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 34/128 (26%), Gaps = 1/128 (0%)

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                    + L  +  ++S L N          +    Y+     ++ Q L   +  L+
Sbjct: 1   NLTPDKLGVVALDPDALSISGLHN-YVKYLKSSGQDAGRYQFNMWSKIFQPLSVAVMMLM 59

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           ++                   IS    F V       +  +   P  +  L         
Sbjct: 60  ALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLI 119

Query: 349 IFLLMIKK 356
              LM++K
Sbjct: 120 SLWLMLRK 127


>gi|15893122|ref|NP_360836.1| hypothetical protein RC1199 [Rickettsia conorii str. Malish 7]
 gi|238650591|ref|YP_002916443.1| hypothetical protein RPR_03025 [Rickettsia peacockii str. Rustic]
 gi|15620329|gb|AAL03737.1| unknown [Rickettsia conorii str. Malish 7]
 gi|238624689|gb|ACR47395.1| hypothetical protein RPR_03025 [Rickettsia peacockii str. Rustic]
          Length = 362

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/361 (9%), Positives = 103/361 (28%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + F +    ++ +  +  +   +    +     +   ++  Y IP +
Sbjct: 4   LKTLSWYLTKLYSKCFFIILFLLIGLLIISNVFDLLQKFKNIYVPFSFFWRLILYKIPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ +N EL  + ++G     ++     + ++L I      N 
Sbjct: 64  LGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFTTILNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS----KYNPNNTLQGIFIV 176
           I        + L AK         +         + L  +      ++      +   I 
Sbjct: 124 IGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDETQIIQTQFINVAEKKLNNIT 183

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  +           +    ++  +         +K  + +   +        +  
Sbjct: 184 ILFVDHNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETKAYNNL---TMQTNLSINSLV 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              ++    ++  L     N           Y+  ++K+L + +  +   +++      +
Sbjct: 241 NKFIRPEMVSIWAL-PKLINELLNSGLPAINYQIYYYKQLFKPIMMMATVILASCFISLK 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                ++KI  + +               I           IL   +        +M+  
Sbjct: 300 QRDNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIMLHY 359

Query: 357 K 357
           K
Sbjct: 360 K 360


>gi|57237364|ref|YP_178377.1| hypothetical protein CJE0358 [Campylobacter jejuni RM1221]
 gi|57166168|gb|AAW34947.1| membrane protein, putative [Campylobacter jejuni RM1221]
          Length = 352

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/361 (11%), Positives = 93/361 (25%), Gaps = 13/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    ++     I +L     +     + N+ L    +L  + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPK---AANLDLLYVMFLSFSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E + +   G SR  +I      A+            
Sbjct: 58  VPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    +       +    + + ++    L  +          N       I     
Sbjct: 118 SFAYANDYKR------NILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNI 171

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI----SKDISIMKFKSYTLQTESANSS 236
              +   +  + +   + ++ IL DG +          +  + I  F             
Sbjct: 172 NDLNLSSFVSAKNAYFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPKI 231

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              + +N          +      +    +  +   +K +    F     LI        
Sbjct: 232 IEGVASNSDYSISDALESFELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFFPVI 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           A       +  +   +++           + +       I I+   +        +  K 
Sbjct: 292 ARFFNLAIVTFMAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYKH 351

Query: 357 K 357
           +
Sbjct: 352 R 352


>gi|225010828|ref|ZP_03701296.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
           MS024-3C]
 gi|225005036|gb|EEG42990.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
           MS024-3C]
          Length = 462

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 77/233 (33%), Gaps = 15/233 (6%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           +FI     I   I+ ++     L I+ K   YL+P +   V P    + +     +   +
Sbjct: 1   MFIFIFQSIWLYIDNLAGKGLDLVIIGKFIFYLLPNLTEKVLPLTVLLSSILTFGTFAEH 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   +  +G S    ++ ++ L  +L +  F   + I P        L           
Sbjct: 61  YEFAAMKASGISLQRSMRTLIVLVSVLGLVTFYFADRIIPAAELKSYSLKKNIAKVKPAV 120

Query: 144 YLEENLFF-RLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI---YYAQSGSIDLDRQ 199
            + E LF       + I + +    N      +   + T          A+ G +     
Sbjct: 121 AIAEGLFSEFEGTGMTILVQEKYGENDRYLRDVTIHKKTDNQINTTVIKAKEGELLSSEN 180

Query: 200 AI----ILNDGEVHR-------KSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +     +L DG  +        K+      ++  F++YT+  +    + + + 
Sbjct: 181 SNLIKLVLKDGHYYESLSVTTSKNHQKHPYAVSNFETYTINIDLTELNMVDMD 233



 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/107 (9%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           +         R ++   +    HK+    L  ++   +    A   A++R+     P+ I
Sbjct: 333 IQTKRKELLIRYKIYNMHALSLHKKYALALSCIVLFFVG---APLGAIIRKGGLGLPMVI 389

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMIKK 356
           ++ +    ++   +  +  ++         ++    +  + + + K+
Sbjct: 390 AIVLFLTYYFLGVFTYNYAKEGNISPFFGAWIPTLVMLPLGIFLTKR 436


>gi|57168449|ref|ZP_00367583.1| probable integral membrane protein Cj0313 [Campylobacter coli
           RM2228]
 gi|57020257|gb|EAL56931.1| probable integral membrane protein Cj0313 [Campylobacter coli
           RM2228]
          Length = 352

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/361 (11%), Positives = 99/361 (27%), Gaps = 14/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +  L ++     I +L   N +     + N+ L    +L  + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFLSLLGFYCGIDLLLNFNDLPD---AANLSLLYVIFLAFSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P          L SM R  E + +   G S+  +I      A+            
Sbjct: 58  VTYVLPVSLIFALVLSLVSMIRANEFVSLYALGLSKNLVIIFPFLWALFFCFVYVGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    + +     +      +                     N       I     
Sbjct: 118 PFAYANDYKRNILKNGTMLKQSGEVFLKFNNEFIYI------SKVNNGQSTAQNIKIFNI 171

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGE----VHRKSPISKDISIMKFKSYTLQTESANSS 236
              +   + ++ S   +++  IL +G            +K ++I +FK            
Sbjct: 172 KDLNLSSFIEAKSGIFEKKNWILKEGNLTLLPKEYELGNKGLNISEFKELNTLEGFKPKI 231

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK- 295
              + ++       +  +      +   +E+ +   +K +    F     LI        
Sbjct: 232 IEGVASDSDYSILDILESLELFKTQNISIESLKISLYKLVFMPFFAPFLMLIMYYFFPVI 291

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        F+   +++G+ +  S +            ++ + L      F+    
Sbjct: 292 ARFFNLAFVAFVAFVVTLLTWGMLFLLSRLSENGVILSELGIVMPIVLLIFLGGFMFYKH 351

Query: 356 K 356
           +
Sbjct: 352 R 352


>gi|34581207|ref|ZP_00142687.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262592|gb|EAA26096.1| unknown [Rickettsia sibirica 246]
          Length = 362

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/361 (9%), Positives = 103/361 (28%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + F +    ++ +  +  +   +    +     +   ++  Y IP +
Sbjct: 4   LKTLSWYLTKLYSKCFFIILFLLIGLLIISNVFDLLQKFKNIYVPFSFFWRLILYKIPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ +N EL  + ++G     ++     + ++L I      N 
Sbjct: 64  LGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFTTILNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS----KYNPNNTLQGIFIV 176
           I        + L AK         +         + L  K      ++      +   I 
Sbjct: 124 IGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDKTQIIQTQFINVAEKKLNNIT 183

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  +           +    ++  +         +K  + +   +        +  
Sbjct: 184 ILFVDHNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETKAYNNL---TMQTNLSINSLV 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              ++    ++  L     N           Y+  ++K+L + +  +   +++      +
Sbjct: 241 NKFIRPEMVSIWAL-PKLINELLNSGLPAINYQIYYYKQLFKPIMMMATVILASCFISLK 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                ++KI  + +               I           IL   +        +M+  
Sbjct: 300 QRDNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIMLHY 359

Query: 357 K 357
           K
Sbjct: 360 K 360


>gi|207092118|ref|ZP_03239905.1| hypothetical protein HpylHP_03688 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 272

 Score = 48.5 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 93/266 (34%), Gaps = 2/266 (0%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + P
Sbjct: 5   YLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S   + K  + L++L+S  L +   I+ P  +
Sbjct: 65  ITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIPTSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S       + +  +  +        +L D L         NN+   + +  ++       
Sbjct: 125 SAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--DKAENNSYDNLVLFSNKSLSQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G+I+       LN  + H        +  + F+   L+ +  + ++         
Sbjct: 183 ILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQGT 242

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEF 272
                       N        +    
Sbjct: 243 DYLGYWKKAFGKNANKNQKRRFSQAI 268


>gi|8925955|gb|AAF81687.1|AF233069_10 unknown [Galdieria sulphuraria]
          Length = 142

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 49/138 (35%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YIL+ +   F++S      I   + +L  +           I  KI  Y  P  +
Sbjct: 3   TIIDRYILQLLIGPFVISSSAFTSITLSVGVLFELVRRVVEGLPFKIAGKILLYKSPYFI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P      T      +  N EL+   + G S    ++  +    L++I  F   ++I
Sbjct: 63  FLSFPLASLFATLITFNQLANNKELIGFRSLGISNYKWLRSTIIFGTLIAISSFFINDLI 122

Query: 122 EPKCRSTIKQLSAKAQLA 139
            P       +L  +++  
Sbjct: 123 VPVSNHRANELLRESKEN 140


>gi|86142618|ref|ZP_01061057.1| hypothetical protein MED217_06881 [Leeuwenhoekiella blandensis
           MED217]
 gi|85830650|gb|EAQ49108.1| hypothetical protein MED217_06881 [Leeuwenhoekiella blandensis
           MED217]
          Length = 514

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/108 (11%), Positives = 36/108 (33%), Gaps = 6/108 (5%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           +     +   + + L  Y    H++       +I   +    A   A++R+     PI I
Sbjct: 327 IKNRKTDNGIKVKTLSKYEIALHEKFVLAFGCIILFFVG---APLGAIIRKGGLGLPIVI 383

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIKK 356
            + +     +   +  +   ++      L  +L    +  + + +  +
Sbjct: 384 GVVLFLTYHFIGIFAKNSA-EDGSVAAWLASWLSTLILFPLGVYLTYR 430


>gi|157829030|ref|YP_001495272.1| hypothetical protein A1G_06555 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933754|ref|YP_001650543.1| hypothetical protein RrIowa_1403 [Rickettsia rickettsii str. Iowa]
 gi|157801511|gb|ABV76764.1| hypothetical protein A1G_06555 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908841|gb|ABY73137.1| hypothetical membrane spanning protein [Rickettsia rickettsii str.
           Iowa]
          Length = 362

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/360 (11%), Positives = 106/360 (29%), Gaps = 6/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + F +    ++ +  +  +   +    +     +  L++  Y IP +
Sbjct: 4   LKTLSWYLTKLYSKCFFIILFLLIGLLIISNVFDLLQKFKNIYVPFSFFLRLILYKIPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ +N EL  + ++G     ++     + ++L I      N 
Sbjct: 64  LGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFTTILNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL---YIKISKYNPNNTLQGIFIVD 177
           I        + L AK         +         + L      I     N   + +  + 
Sbjct: 124 ISTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDETQIIQTQFINVAEKKLNNIT 183

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                 +  +  +  ++    +  +L+   V   +               L   S  +  
Sbjct: 184 ILFVDHNNSFLKRIDALYGIIENKMLHLSRVKVFTKEETKAYNNLTMQTNLSINSLVNKF 243

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           I     +    + L    N           Y+  ++K+L + +  +   +++      + 
Sbjct: 244 IRP---EMVSIWALPKLINELLNSGLPAINYQIYYYKQLFKPIMMMATVILASCFISLKQ 300

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
               ++KI  + +               I           IL   +        +M+  K
Sbjct: 301 RDNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIMLHYK 360


>gi|46199050|ref|YP_004717.1| hypothetical protein TTC0744 [Thermus thermophilus HB27]
 gi|55981077|ref|YP_144374.1| hypothetical protein TTHA1108 [Thermus thermophilus HB8]
 gi|46196674|gb|AAS81090.1| hypothetical conserved membrane spanning protein [Thermus
           thermophilus HB27]
 gi|55772490|dbj|BAD70931.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 368

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/362 (11%), Positives = 103/362 (28%), Gaps = 32/362 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+LR      L++ LF+  +            +      L  +L+   Y +P +  
Sbjct: 2   ILHRYLLRESLPVLLLALLFLTAVYLFGFFYAGARWL--EGVPLPKILRWLSYHVPGIWV 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P      T  V   +        + + G        P++ +  +LS      +  + 
Sbjct: 60  QVFPIALVTTTVLVFGRLAAEGAHFALLSAGIPLGRAALPLVAVGAVLSGLALYLQEYVV 119

Query: 123 PKCRST-IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           P+  +        +        +  + +   +     +    ++          + +   
Sbjct: 120 PEANNRVRVAWWDEIHTQGAGLFRLKGMQIPIGQGKSLYFQDFDMAAKEMVGVRITAFQG 179

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS------------------KDISIMKF 223
           +     +A+ G+   + + + L D   ++                       + +S  K 
Sbjct: 180 EVGTFLFAERGTW--EDKTLTLKDYRYYQVDFAQVPGLETAPDLLAQVRRVFRVVSQGKT 237

Query: 224 KSYTLQTESANSSTIVLKAND--QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
              T     A +           Q+          +P   P      R E H +L   L 
Sbjct: 238 LEVTSDLSRARAIADYADTFSFGQDSLSEAWRKLKDPFLPPLEKWRARLELHSKLALPLA 297

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILY 340
            ++      +     A+  +  K   + + +S+   + ++G  ++   +       P L 
Sbjct: 298 NLV------LVLLAAAMALRYGKSPGLALGMSVVLALAYYGAFFLGRALAGIGALPPELG 351

Query: 341 LF 342
            +
Sbjct: 352 AW 353


>gi|323163036|gb|EFZ48869.1| hypothetical protein ECE128010_0632 [Escherichia coli E128010]
          Length = 150

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 65/138 (47%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQL 138
             P   + I QL  ++Q 
Sbjct: 121 GRPWAYAQIYQLEQQSQS 138


>gi|229587132|ref|YP_002845633.1| Putative permease [Rickettsia africae ESF-5]
 gi|228022182|gb|ACP53890.1| Putative permease [Rickettsia africae ESF-5]
          Length = 362

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/361 (9%), Positives = 103/361 (28%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + F +    ++ +  +  +   +    +     +   ++  Y IP +
Sbjct: 4   LKTLSWYLTKLYSKCFFIILFLLIGLLIISNVFDLLQKFKNIYVPFSFFWRLILYKIPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ +N EL  + ++G     ++     + ++L I      N 
Sbjct: 64  LGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFTTILNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS----KYNPNNTLQGIFIV 176
           I        + L AK         +         + L  +      ++      +   I 
Sbjct: 124 IGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDETQIIQTQFINVAEKKLNNIT 183

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  +           +    ++  +         +K  + +   +        +  
Sbjct: 184 ILFVDHNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETKAYNNL---TMQTNLSINSLV 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              ++    ++  L     +           Y+  ++K+L + +  +   +++      +
Sbjct: 241 NKFIRPEMVSIWAL-PKLIHELLNSGLPAINYQIYYYKQLFKPIMMMATVILASCFISLK 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                ++KI  + +               I           IL   +        +M+  
Sbjct: 300 QRDNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIMLHY 359

Query: 357 K 357
           K
Sbjct: 360 K 360


>gi|57242053|ref|ZP_00369993.1| probable integral membrane protein Cj0313 [Campylobacter
           upsaliensis RM3195]
 gi|57017245|gb|EAL54026.1| probable integral membrane protein Cj0313 [Campylobacter
           upsaliensis RM3195]
          Length = 350

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/354 (10%), Positives = 91/354 (25%), Gaps = 12/354 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    +V     + +L     +     S N++L    ++  + 
Sbjct: 1   MSIFFHFISFIYLKNFFILFFALVGFYCGVDLLLNFKDL---PASANLILLYVLFVGFSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P            +M RN E + +   G S+  +I      A+L           
Sbjct: 58  VTYILPISLIFALVLSFLTMIRNNEFVSLYALGLSKNRVIIYPFLWALLFCFIYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    + +     L              L  +      K       + + I   +D
Sbjct: 118 SFAYANEYKRSILKNGVLNKKS------SDIFLKFNEEFVYVKSLDEGLAKELKIFSLKD 171

Query: 181 TQTHKIYYAQSGSIDLDRQAIILND--GEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                +  A+    + +   +   +                   F +             
Sbjct: 172 GNLSHLIQAKRALFNENSWLLEEGNITYIPKEFVLGENGYKSENFANLETLEGFKPKLAK 231

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS-IVAADKRA 297
            + +  +   +    +    + +       +   +K +    F     LI          
Sbjct: 232 SVASGKEYSIYDAYQSLILFDSQGLNTRNVKIALYKLIFAPFFAPFLMLIMYYYFPVIAR 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                      F+   + +G  + F  +      +  +  IL   L    ++F+
Sbjct: 292 FFNLAFVAFVAFVVTLVVWGGLFVFLRLSENGVISGEFGIILPNLLLAFFALFI 345


>gi|305432868|ref|ZP_07402026.1| integral membrane protein [Campylobacter coli JV20]
 gi|304444022|gb|EFM36677.1| integral membrane protein [Campylobacter coli JV20]
          Length = 352

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/361 (11%), Positives = 98/361 (27%), Gaps = 14/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +  L ++     I +L   N +     + N+ L    +L  + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFLSLLGFYCGIDLLLNFNDLPD---AANLSLLYVIFLAFSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P          L SM R  E + +   G S+  +I      A+            
Sbjct: 58  VTYVLPVSLIFALVLSLVSMIRANEFVSLYALGLSKNLVIIFPFLWALFFCFVYVGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    + +     +      +                     N       I     
Sbjct: 118 PFAYANDYKRNILKNGTMLKQSGEVFLKFNNEFIYI------SKVNNGQSTAQNIKIFNI 171

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGE----VHRKSPISKDISIMKFKSYTLQTESANSS 236
              +   + ++ S   +++  IL +G            +K ++I +FK            
Sbjct: 172 KDLNLSSFIEAKSGIFEKKNWILKEGNLTLLPKEYELGNKGLNISEFKELNTLEGFKPKI 231

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK- 295
              + ++       +  +      +   +E+ +   +K +    F     LI        
Sbjct: 232 IEGVASDSDYSILDILESLELFKTQNISIESLKISLYKLVFMPFFAPFLMLIMYYFFPVI 291

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        F+   +++ + +  S +            ++ + L      F+    
Sbjct: 292 ARFFNLAFVAFVAFVVTLLTWSMLFLLSRLSENGVILSELGIVMPIVLLIFLGGFMFYKH 351

Query: 356 K 356
           +
Sbjct: 352 R 352


>gi|157738400|ref|YP_001491084.1| hypothetical protein Abu_2200 [Arcobacter butzleri RM4018]
 gi|157700254|gb|ABV68414.1| conserved hypothetical membrane protein [Arcobacter butzleri
           RM4018]
          Length = 338

 Score = 47.7 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 121/356 (33%), Gaps = 19/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+   +  +F      + FI  VI +++   L +  T +   L +I  Y IP ++ 
Sbjct: 2   KLQRYLYSQLAITFFPIFFGLFFITAVIFLVKISALTAIITVNFFELFRIFSYTIPDIIF 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P  F +     L+ ++   EL +I + G +   ++K  L L +LL++ L +    + 
Sbjct: 62  YTMPISFFISMVITLSKLSSEYELTVITSFGLNPFKILKIFLPLTLLLTLLLLVVSVGLI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           PK     KQ     +    F+        +  D L     K N       +         
Sbjct: 122 PKSDFERKQFVNIKKNEANFNIKSGEFGQKFGDWLIFINDKKNNLYEDVKLL---KVQKD 178

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             +   +++  +D D   + +   E        ++ + + +++  +    + + T V   
Sbjct: 179 NDQFVISKNAVLDNDNGVLSIRLDEGKAFLIDKEEFNQINYEAMYINDSISTAKTTVFTT 238

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
                   +    +  +                LT ++    F L+S+           R
Sbjct: 239 TYDYWKNNIKNKVDLDD----------------LTFFILTSFFPLMSLFLVITFGYFNPR 282

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            + +   +   IS  +++     I           I  L+L     ++   IKK+Y
Sbjct: 283 YEKNRAIMYSLISIVLYYVLIKSIGDKIFLHTLYIIPILWLSGTYLLYSKTIKKEY 338


>gi|157964920|ref|YP_001499744.1| putative permease [Rickettsia massiliae MTU5]
 gi|157844696|gb|ABV85197.1| Putative permease [Rickettsia massiliae MTU5]
          Length = 370

 Score = 47.7 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/361 (9%), Positives = 105/361 (29%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + F +    ++ +  +  I   +    +     +   ++  Y IP +
Sbjct: 12  LKTLSWYLTKLYFKCFFIILFLLIGLLIISNIFDLLQKFKNIYVPFSFFWRLILYKIPYL 71

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ +N EL  + ++G     ++     + ++L I      N 
Sbjct: 72  LGQVSSLISFSAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFTTILNP 131

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS----KYNPNNTLQGIFIV 176
           I        + L AK         +         + L  +      ++      +   I 
Sbjct: 132 IGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFEALNDENQIIQTQFINVAEKKLNNIT 191

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  +           +    ++  +         +K  + +  ++        +  
Sbjct: 192 ILFVDHNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETKAYNNLTIQT---NLSINSLV 248

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              ++    ++  L     N        +  Y+  ++K+L + +  +   +++      +
Sbjct: 249 NKFIRPEMVSIWVL-PKLINELLNSGLPVINYQIYYYKQLFKPIMMMATVILASCFISLK 307

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                ++KI  + +               I           IL   +        +M+  
Sbjct: 308 QRDNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIMLHY 367

Query: 357 K 357
           K
Sbjct: 368 K 368


>gi|153827726|ref|ZP_01980393.1| membrane protein, putative [Vibrio cholerae MZO-2]
 gi|149737797|gb|EDM52702.1| membrane protein, putative [Vibrio cholerae MZO-2]
          Length = 144

 Score = 47.3 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 14/126 (11%)

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
            I    SY          +            LLN                ++E   R++ 
Sbjct: 1   MITNLDSYDGLIGQREVKSAERDWEALPTLSLLN----------NADRRAQAELQWRISL 50

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
               V   L++++     A+  ++ +   +  ++ I    F   S     I ++     I
Sbjct: 51  ---VVCIPLLTMLVVPLSAVNPRQGRFAKMGPAILIYLTYFLALSATKSAI-EDGSLPVI 106

Query: 339 LYLFLF 344
           + L+  
Sbjct: 107 IGLWPI 112


>gi|254455252|ref|ZP_05068681.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082254|gb|EDZ59680.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 325

 Score = 46.9 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 100/325 (30%), Gaps = 9/325 (2%)

Query: 35  RINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT-- 92
            +        S    + +S    P+++  + PF F + T      +  N E+ I   +  
Sbjct: 3   ELEFFKEIEVSSGFPIFLSLLNSPSMIFEMLPFIFLITTQLFFIKLFNNNEIEIFKYSGL 62

Query: 93  -GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
             TS + +   ++  + ++   +F + + +        K         L           
Sbjct: 63  KNTSILKIFSLIVISSGIILTIIFYNFSAVFKNFYLEEKTKFTSDSKYLAVITKNGLWIK 122

Query: 152 RLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK 211
              D+    ++     +       +   D     I   +S  I++        + +V+  
Sbjct: 123 DEIDEKIYIVNSSKIESNFLINNFITEFDKDYKVIRNLKSDKINIQSTDWQAFNVKVY-- 180

Query: 212 SPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSE 271
                +  I K  +     +     T+    +  +   L     N        L     +
Sbjct: 181 --DKNNYEIKKQLNIKTNFDYKRIQTLYSNLSSLSFYQLFELRKNYKKLN-YSLIEINLQ 237

Query: 272 FHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
           F K L+  L+  +  + S +   +   +        + +  S+       F  ++   E+
Sbjct: 238 FLKILSFPLYLFLVAIFSSLIMFRVKRLHNTTFKISLGLFFSVIIYYINNFFMVMGNTER 297

Query: 332 NPYYIPILYLFLFCISSIFLLMIKK 356
               I  +++ L  +S I  LM+ K
Sbjct: 298 -ISLIFAIFIPLILLSIINSLMLNK 321


>gi|56698095|ref|YP_168466.1| hypothetical protein SPO3263 [Ruegeria pomeroyi DSS-3]
 gi|56679832|gb|AAV96498.1| hypothetical protein SPO3263 [Ruegeria pomeroyi DSS-3]
          Length = 150

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 1/92 (1%)

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
                  E  +RL+     V   LI           R       +  + +    +    S
Sbjct: 43  SRGEISEELQERLSWIGVSVAVTLIGFSTLMLGTFSRFG-LWPQLIAAFAGLIALEGMRS 101

Query: 324 YIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                +  +P    + +       ++ +L +K
Sbjct: 102 TATAFVGSHPGLWWVQHAPALGGIALSILFLK 133


>gi|260886192|ref|ZP_05897457.1| putative permease [Prevotella tannerae ATCC 51259]
 gi|260850440|gb|EEX70309.1| putative permease [Prevotella tannerae ATCC 51259]
          Length = 629

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
               + + T+R ++H++ T  +  + F  I    A   A++R+     P  I++ +    
Sbjct: 333 EEGDKSVRTHRIQWHQKFTMSIACIFFFFIG---APLGAIIRKGGLGMPTIIAVILFIFY 389

Query: 319 FWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
           +   +  +       +  I  +++    ++ +   +  K
Sbjct: 390 YIINTSGMKMARDGAWNMIFGMWISTVVLTPLGCFLTYK 428


>gi|224418451|ref|ZP_03656457.1| hypothetical protein HcanM9_04150 [Helicobacter canadensis MIT
           98-5491]
 gi|313141983|ref|ZP_07804176.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131014|gb|EFR48631.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 341

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 117/356 (32%), Gaps = 16/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+     + F      + FIA V+  ++   +      S   LL +  Y +P ++ 
Sbjct: 2   RIKNYLFHSFAQIFFPIFFVLFFIASVVIFIRIAGVTFVVQISFFELLSLYFYTLPLMIF 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P  F +  T  L+ ++ + EL ++   G +   +IK    +A L+S  LFI   ++ 
Sbjct: 62  FVIPLSFFVACTLSLSRLSFDYELPVLFALGMNPSKIIKIFFPIAALVSFSLFILSLVLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   +  +Q   + + ++  +        +L D L                 IV     +
Sbjct: 122 PLSDTAYRQFLEERKNSININLQAGEFGQKLGDWLVYVQKSK---EDSSYENIVLLSFAK 178

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
              + ++ +  I      +     +     P    +  + F +  +++       + L  
Sbjct: 179 EGGMIFSDNAKIVNQMGVMEAILEKGSIYRPKEDFVEKILFDTLIIRSSITAIDEVDLGV 238

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
                      +      R              L+ ++    F L+S+       +   R
Sbjct: 239 IGYWKRAFYENDRQKKTLRN-------------LSMYVMMSCFPLVSLFFFPLLGVKNPR 285

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            + +   +      G+F+   Y+               ++L     +F  +IKK Y
Sbjct: 286 YQKNYTILQAMGVIGIFYALMYLFASYLPLLGMFIFPIIWLLLGYLLFERVIKKYY 341


>gi|67459625|ref|YP_247249.1| permease [Rickettsia felis URRWXCal2]
 gi|67005158|gb|AAY62084.1| Predicted permeases [Rickettsia felis URRWXCal2]
          Length = 362

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/358 (10%), Positives = 105/358 (29%), Gaps = 9/358 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + F +    ++ +  +  I   +    +     +   ++  Y IP +
Sbjct: 4   LKTLSWYLTKLYSKCFFIILFLLIGLLIISNIFDLLQKFKNIYVPFSFFWRLILYKIPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ +N EL  + ++G     ++     + ++L I      N 
Sbjct: 64  LGQVSSLISFTSMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLILGIVFTTILNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS----KYNPNNTLQGIFIV 176
           I        + L AK         +         + L  +      ++      +   I 
Sbjct: 124 IGTIGLQKYELLEAKLTKKTLSEGIISKSGLLFFESLKDENQIIQTQFINIAEKKLNNIT 183

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  +           +    ++  +         +K  + +  ++        +  
Sbjct: 184 ILFVDSNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETKTYNNLTIQT---NLSINSLV 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              ++    ++  L     N           Y+  ++K+L + +  +   +++      +
Sbjct: 241 NKFIRPEMVSIWAL-PKLINELLNSGLPAINYQIYYYKQLFKPIMMMATVILASCFISLK 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                ++KI  + +              +      N   I  + L    I  I   +I
Sbjct: 300 QRDNSQEKILILGLFSGF-IAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFII 356


>gi|213022333|ref|ZP_03336780.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 125

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 47/117 (40%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++                +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVPKDIQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L +        
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEW 123


>gi|237751254|ref|ZP_04581734.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229372620|gb|EEO23011.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 342

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 107/322 (33%), Gaps = 13/322 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+LR IG  F      + FIA +I +L    L +    S+  L+++  Y IP    
Sbjct: 5   LLKKYVLRSIGEMFFPFFFVLFFIASIILLLNIAMLTNGVKLSMIDLMQLYLYGIPANTF 64

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V    F       L+ ++  +E+L+  + G S   +I+ +L L +L+S  L +   ++ 
Sbjct: 65  FVIALTFYSACILGLSKLSYESEMLVFFSLGVSPKDIIRILLPLCVLVSFVLCMFSFVMT 124

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  +   K   +  +  +       +   ++ D L   I   + N     +   ++ +  
Sbjct: 125 PNSKQAYKDFISLKKNEINIDLKPGDFGQKIGDWLVY-IDSKDKNVFHGLVLYANTTEQI 183

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                 A++G I+  +  + L   +          +  ++FK   ++     +       
Sbjct: 184 KDNFIIAKTGKIENRQGILELVLYDGDAYFNDKDFLQKIEFKEMIVRNFLDGTQDSDYNV 243

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
                S           +                   LFP++   + +    K     + 
Sbjct: 244 FTYWASAFQGDYKQLKRFSQS------------FCTSLFPLVSIFLILFFGIKNPRFHKN 291

Query: 303 KKIHPIFISLSISFGVFWGFSY 324
                +  S S      +  S 
Sbjct: 292 YAYFYVLGSGSFYLLAMYVLSM 313


>gi|218296646|ref|ZP_03497364.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
 gi|218242959|gb|EED09492.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
          Length = 368

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 46/371 (12%), Positives = 107/371 (28%), Gaps = 32/371 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   ++L+       ++ LF+  I            +      +  +L+   Y +P VL 
Sbjct: 2   TLYRHLLKESLPVLFLTLLFLTAIFLFGFFYAGARWL--EGVPIPKILRWLSYHVPGVLV 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P      T  V   +        + + G        P+L+L  LLS+     +  + 
Sbjct: 60  QAFPIALVTTTVLVFGRLAAEGAQFALLSGGVPLWRAALPLLWLGALLSVAALYLQEYVV 119

Query: 123 PKCRST-IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           P+  +        +        +  + +   +     +    ++          + S   
Sbjct: 120 PEANNRVRVAWWDEIHTQGAGLFRLKGMQIPIGQGRSLYFEDFDMERKEMVGVRIVSFQG 179

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS------------------KDISIMKF 223
           +     +A+ G+   D + I L     +R                       + +S  + 
Sbjct: 180 EVGTFLFAERGTW--DDRLITLRGYRFYRVDFREVPGLEGARDLLAQVRRVFRAVSRGEV 237

Query: 224 KSYTLQTESANSSTIVLKAND--QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
                    A +           QN          +P   P   +  R EFH +L   L 
Sbjct: 238 LEVESDLSRARAIADYADTFSFGQNSLSQAWRKARDPFLPPLERDRARLEFHSKLALPLA 297

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILY 340
            ++      +     A+  +  +   + + LS+   + ++G  ++   +       P L 
Sbjct: 298 NLV------LVLLAAAMALRYGRSTGLALGLSVVLALGYYGAFFLGRALAGVGAIPPELG 351

Query: 341 LFLFCISSIFL 351
            +   +    L
Sbjct: 352 AWGANLLFFLL 362


>gi|157826222|ref|YP_001493942.1| hypothetical protein A1C_06005 [Rickettsia akari str. Hartford]
 gi|157800180|gb|ABV75434.1| hypothetical protein A1C_06005 [Rickettsia akari str. Hartford]
          Length = 362

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/358 (10%), Positives = 105/358 (29%), Gaps = 9/358 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + FL+    ++ +  +  I   +    +     +   ++  Y IP +
Sbjct: 4   LKTLSWYLAKLYSKCFLVILFLLIVLLIISNIFDLLQKFKNIYVPFSFFWRLILYKIPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V            L+++ +N EL  + ++G     ++     + ++L I      N 
Sbjct: 64  LGQVCSLISFTAMLFFLSNLTKNNELTAMLSSGIHIWQVLVIPCIVTLILGIVFTTILNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS----KYNPNNTLQGIFIV 176
           I        + L AK         +         + L  +      ++      +   I 
Sbjct: 124 IGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNGENQIIQTQFINVAEKKLNNIT 183

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  +           +    ++            +K  + +  ++        +  
Sbjct: 184 ILFVDSNNSFLKRIDALYGIIENKMLHLKRVKVCTKEETKAYNNLTIQT---NLSINSLV 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              ++    ++  L     N           Y+  ++K+L + +  +   +++      +
Sbjct: 241 NKFIRPEMVSIWSL-PKLINELFNSGLPAINYQIYYYKQLFKPIMMMATVILASCFISLK 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                ++KI  + + L            +      N      + L    I  I   +I
Sbjct: 300 QRDNSQEKILILGLFLGF-IAYSLSEILLKILTYNNLSLTAAILLPSMLIFFISNFII 356


>gi|262363206|gb|ACY59927.1| membrane protein [Yersinia pestis D106004]
          Length = 225

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 74/215 (34%), Gaps = 5/215 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNVVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ +++  G  + +LI   L LA+  S    I+   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMNACGMGKKSLIMAALILALFTSGLAAINTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   + + L    F   +D                 +F+   R   
Sbjct: 122 PWSSKHQDVVLNDAKANPSLAALGGGQFKSSNDGNSALFIGNVAGKEFNRVFLAQLRPNG 181

Query: 183 THK-----IYYAQSGSIDLDRQAIILNDGEVHRKS 212
             +             +    Q +ILN G  +  +
Sbjct: 182 NQRPSVVVADSGHMSELPDGSQMVILNKGTRYEGT 216


>gi|150025640|ref|YP_001296466.1| hypothetical protein FP1590 [Flavobacterium psychrophilum JIP02/86]
 gi|149772181|emb|CAL43657.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 484

 Score = 46.1 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/113 (9%), Positives = 41/113 (36%), Gaps = 3/113 (2%)

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
            +     + N  + +Y+ + + ++    +++       ++   I    A   A++R+   
Sbjct: 339 MSAKQNFDINNFSLDYKKKDINSFWISIYEKFVIAFACILMFFIG---APLGAIIRKGGL 395

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             PI  ++ I     +  ++     +++     +     F +     + + +K
Sbjct: 396 GLPIVFAMLIFITFHFLNTFGKKVAQESGMAPFLGAWISFFLLVPLAIFLTRK 448



 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 87/252 (34%), Gaps = 14/252 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+L+    SF    + ++FI  +  +   I+ ++     L ++LK   + +P +
Sbjct: 1   MKILDKYLLKTYLTSFFGVFIILIFIFILQTVWLFISELAGKDLDLILILKFLLFKMPGL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V P    +        M  N E   + + G S    +K + F   LLSI  F   N 
Sbjct: 61  IPLVLPLSVLLSAIMTFGDMAENYEFAAMKSAGISFQRTMKGLTFFIFLLSIGAFFFANN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P                     + E  F  + +       K   N        +  + 
Sbjct: 121 VIPYAEFKFNNFRKNIAQVKPAMAIAEGQFSTIGNINIKVNKKSGTNGEFLEGVTIHKKS 180

Query: 181 T---QTHKIYYAQSGSIDLDRQAIILN----DGEVHRK-------SPISKDISIMKFKSY 226
                   +  ++SG +    ++ +L     DG  +                + + FK Y
Sbjct: 181 DLGEGAKTVIKSKSGQLISSEESSLLQLVLIDGYYYEDITPKSYEDRQKMPFAKVNFKRY 240

Query: 227 TLQTESANSSTI 238
           T+  + +  + +
Sbjct: 241 TINIDLSKLNKV 252


>gi|330975729|gb|EGH75795.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 131

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/96 (10%), Positives = 31/96 (32%), Gaps = 5/96 (5%)

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
                   +E   R++  L   I  L++I       +  ++ +   +  ++ +       
Sbjct: 18  GNPAPRSVAELQWRISLPLSVFIVTLMAIPL---SRVNPRQGRYLKLLPAILLYMSYLAI 74

Query: 322 FSYIIHKI--EQNPYYIPILYLFLFCISSIFLLMIK 355
              +   +   + P  + + ++    +S   LL   
Sbjct: 75  LISVRSSLEKGKLPLSLGMWWVHAIYLSIGLLLFYW 110


>gi|156102633|ref|XP_001617009.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148805883|gb|EDL47282.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 713

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 57/241 (23%), Gaps = 8/241 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y +       L+  + +  +         + ++       +++L + G L   +
Sbjct: 481 MNKIYKYAIYSFFGELLVISIIVFSLFI-------LRIIIKDNNKFSVILTMYGILY-KI 532

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              +      +    +L+          I     +          L I   +  +  +NI
Sbjct: 533 FCYIFAHYVLVMGLYILSIYYNIYVNKDIYEHSFNFFCYHYVYNNLHIHFLMLFYAFQNI 592

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I     +                 + E +  +     Y      +P +           +
Sbjct: 593 IFTINDAFNCIRMMFIIFKHIMVRIYEKITCKNFITFYELKEDKSPLSLNCMNKFKKKCN 652

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                        ID+D    +  D        + +          T +    N    + 
Sbjct: 653 MNNKCCRDKTCVEIDIDEIHELEYDKSQLPFPSLHQKPYCKNLDIKTYEQSLLNMRNPIF 712

Query: 241 K 241
           K
Sbjct: 713 K 713


>gi|218659050|ref|ZP_03514980.1| putative permease protein [Rhizobium etli IE4771]
          Length = 272

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 75/246 (30%), Gaps = 6/246 (2%)

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
             +P  L    PF        VL  +NR  EL++    G S    + P +  ++ L +  
Sbjct: 1   MRLPLNLQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFVAGSLALGVLT 60

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
             + N +    +     + +  +           + +         +          G  
Sbjct: 61  TTALNPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTK 120

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +VD+          +    +  D     L DG       + +    +  +  ++Q  +  
Sbjct: 121 LVDAVLIHFDS---SGRVIMRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNL 177

Query: 235 SSTIVLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               V +   A +    F L+             +   ++F+  L+Q L  V   LI+  
Sbjct: 178 KQDFVQERLTAPETIGFFDLSNRIAAAKSFGISTKALETQFNSLLSQPLLLVAMTLIAAT 237

Query: 292 AADKRA 297
            + K +
Sbjct: 238 VSLKFS 243


>gi|239946701|ref|ZP_04698454.1| permease, YjgP/YjgQ family [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920977|gb|EER21001.1| permease, YjgP/YjgQ family [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 362

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/361 (9%), Positives = 103/361 (28%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + F +    ++ +  +  I   +    +     +   ++  Y IP +
Sbjct: 4   LKTLSWYLTKLYSKCFFIILFLLIGLLIISNIFDLLQKFKNIYVPFSFFWRLILYKIPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ +N EL  + ++G     ++     + ++L I      N 
Sbjct: 64  LGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLILGIVFMTILNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS----KYNPNNTLQGIFIV 176
           I        + L AK         +         + L  +      ++      +   I 
Sbjct: 124 IGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDENQIIQTQFINVAEKKLNNIT 183

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  +           +    ++  +         +K  + +   +        +  
Sbjct: 184 ILFVDSNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETKAYNNL---TIQANLSINSLV 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              ++    ++  L     N           Y+  ++K+L + +  +   +++      +
Sbjct: 241 NKFIRPEMVSIWAL-PKLINELLNSGLPAINYQIYYYKQLFKPIMMMATVILASCFISLK 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                ++KI  + +               I           IL   +        +++  
Sbjct: 300 QRDNSQEKILILGLFSGFIAYSLSEILLKILTYNNLSLITAILLPSMLIFFISNFIILHY 359

Query: 357 K 357
           K
Sbjct: 360 K 360


>gi|225011756|ref|ZP_03702194.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
           MS024-2A]
 gi|225004259|gb|EEG42231.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
           MS024-2A]
          Length = 463

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 79/246 (32%), Gaps = 13/246 (5%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           +FI  +      I+ ++     + I+ K   Y  P ++P+V P    + +     +++ N
Sbjct: 1   MFIFIIQTFWLFIDELAGKGLDIIIISKFLLYYSPKLIPLVLPLSVLLASLMTYGTLSEN 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   + +TG S    +  +    +LL I  F   N + P        L           
Sbjct: 61  YEFAAMKSTGISLQRALLALTIFHVLLGIGTFYFSNHVIPYGELKSYNLRRNLAKLEPTL 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQ------SGSIDLD 197
            + E +F  + +       KY  N+      I+      +      +             
Sbjct: 121 AIREGIFNEIGEINIKVARKYGDNDRFLEDVIIHEYTPNSENNIVIKAERGEMKSETTDP 180

Query: 198 RQAIILNDGEVHR-------KSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFL 250
              ++L +G  +                + + F+ Y +  + +  + + L+  +   +F 
Sbjct: 181 NLKLVLYNGNRYEEVIPKKATDKERIPHAKVYFEEYEMNIDLSKFNNVDLEEENYKSTFR 240

Query: 251 LNPNPN 256
           +     
Sbjct: 241 MQKIDQ 246



 Score = 43.1 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 42/114 (36%), Gaps = 6/114 (5%)

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
           ++    LN   N      + +  ++    ++ T     +   LI        A++R+   
Sbjct: 319 RSSIRNLNTKKNTFFAYQKTINLHKITLQEKYTLIFASLFLFLIGAAL---GAIIRKGGL 375

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIKK 356
             P+ +S+ I     +   +  +  E N    P    +L  F ++   +++ ++
Sbjct: 376 GLPLVLSVLIFLTYHYIGLFGKNAAEDN-SISPFFATWLSTFILAPFAIILTRR 428


>gi|289678195|ref|ZP_06499085.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae FF5]
          Length = 95

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 35/94 (37%)

Query: 3  SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L 
Sbjct: 2  IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQ 61

Query: 63 MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSR 96
          ++ P    +        +   +E+ ++  TG S+
Sbjct: 62 VILPLGLFLGILMAYGRLYLESEMTVLAATGMSQ 95


>gi|51473938|ref|YP_067695.1| hypothetical protein RT0756 [Rickettsia typhi str. Wilmington]
 gi|51460250|gb|AAU04213.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
          Length = 362

 Score = 45.8 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/361 (10%), Positives = 103/361 (28%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+  LY+ +   + F +    ++ +  +  I   +    +     +   +   Y IP +
Sbjct: 4   LKTLSLYLTKLYSKCFFIILFLLIVLLIISNIFDLLQKFKNIYVPFSFFWRFILYKIPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ ++ EL+ I ++G     ++     + ++L I      N 
Sbjct: 64  LTQVSSLISFTSMLFFLRNLTKSNELIAILSSGIHIWQVLIIPCIVTLILGIICTTLLNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS----KYNPNNTLQGIFIV 176
           I          L AK         L         + L         ++      +   I 
Sbjct: 124 ISTIGLQKYAILEAKLTKKALSGGLISESGLLFFESLNEHNQIIQTQFIDVAEQKLNNIT 183

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  +           + +   +  +         +K  + +  ++        +  
Sbjct: 184 ILFIDNNNSFLKRIDALYGIIKNKKLYLNRVKVSMKDETKSYNNLTIQT---NLSINSLV 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              ++    ++  L     N           Y+  ++K+L + +  +   +++      +
Sbjct: 241 NKFMRPEMVSIWAL-PKLINELLNSGLSAINYQIYYYKQLFKPIMMMATVILASCFISLK 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                ++KI  + +               I           IL   L        +++  
Sbjct: 300 QRCNAQEKILILGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSLLIFFISNFIILHY 359

Query: 357 K 357
           K
Sbjct: 360 K 360


>gi|313886927|ref|ZP_07820630.1| putative phage tail component, N-terminal domain protein
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|332300780|ref|YP_004442701.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
           DSM 20707]
 gi|312923624|gb|EFR34430.1| putative phage tail component, N-terminal domain protein
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|332177843|gb|AEE13533.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 678

 Score = 45.8 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 76/187 (40%), Gaps = 5/187 (2%)

Query: 18  MSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVL 77
           +          +  + Q ++ +      + +LL++  Y    VLP   P    + +    
Sbjct: 26  ICWFV----VLMQFLWQHVDDLVGKGMDVGVLLEVIFYAGLYVLPTAVPLGVLLASLMTF 81

Query: 78  TSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQ 137
            ++    ELL + + G     ++KP++ L   +++ LF+  +    K    + Q+   A+
Sbjct: 82  GNLGERLELLAMKSAGVPLSKIMKPLVILVTCIALGLFVYLDRGVQKASVRVYQILFSAR 141

Query: 138 LALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL 196
            A     + + +FF   D   I +   +   +TL  + I D  +  T +I  A +G + +
Sbjct: 142 YARPELEIPKGIFFNGIDGYSIYVGDKDAATSTLYNVMIYDLSEQHTPRIILADTGRLLM 201

Query: 197 DRQAIIL 203
           D   + L
Sbjct: 202 DESKLYL 208



 Score = 45.4 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 270 SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
            E H++ T  +  ++F  +    A   A+VR+     P+ +++ + F +++       K+
Sbjct: 419 QEMHRKFTFPVACLLFFFVG---APLGAIVRKGGVGTPMVLAV-LIFIIYYVIDTFGLKM 474

Query: 330 EQNPYYIPI--LYLFLFCISSIFLLMIKK 356
             +        ++L    I  +   +  K
Sbjct: 475 INSGQIPVWAGMWLSSAVILPLGAFLTYK 503


>gi|332885237|gb|EGK05488.1| hypothetical protein HMPREF9456_02689 [Dysgonomonas mossii DSM
           22836]
          Length = 664

 Score = 45.4 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 37/101 (36%), Gaps = 4/101 (3%)

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
                 + +  ++ E+H++       +IF  I    A   A++R+     P+ +S+ +  
Sbjct: 358 QKINMQKNIRMHKVEWHRKFVLSFACLIFFFIG---APLGAIIRKGGLGMPVVVSVLLFI 414

Query: 317 GVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
             +   +          +     ++L  F +  + + +  K
Sbjct: 415 VYYIIDNIGYKMARDGVWEVWQGMWLSSFALFPLGVFLTYK 455



 Score = 37.3 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 71/203 (34%), Gaps = 8/203 (3%)

Query: 13  GRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAME 72
             +F +       I  +  + + +  +        +L ++  Y I  ++P+  P    + 
Sbjct: 1   MMTFGICLF----IVLMQFLWKFVEDLVGKGLDNVVLAELFMYAILNLIPLALPLSLLLA 56

Query: 73  TTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQL 132
           +     ++    ELL I   G S +  +KP++     +++  F  +N   P+ +  ++ L
Sbjct: 57  SLMAFGNLGERLELLAIKAAGVSLLKTMKPLIIFISCVAVGAFFFQNEAMPRIQVKLRSL 116

Query: 133 SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYA--- 189
               +       + E  F+    +  + + K +    +    ++         +      
Sbjct: 117 MISIRQKSPELDIPEGSFYSGITNYSLYVKKKDKETRMLKDVMIYDTSEGFDNMSVFVCD 176

Query: 190 -QSGSIDLDRQAIILNDGEVHRK 211
               SI  ++  ++LN     R 
Sbjct: 177 SALMSISSNKDFLLLNLYSGQRF 199


>gi|322378344|ref|ZP_08052801.1| Conserved hypothetical integral membrane protein [Helicobacter suis
           HS1]
 gi|321149230|gb|EFX43673.1| Conserved hypothetical integral membrane protein [Helicobacter suis
           HS1]
          Length = 348

 Score = 45.4 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 114/333 (34%), Gaps = 10/333 (3%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           IA ++ ++   ++      S   L ++  Y +P  +  + P  F       L  ++ + E
Sbjct: 26  IASMVMLISIASVTLVVKLSFLDLAQLYIYSLPGTIFFIIPITFFGACAIGLARLSYDHE 85

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           LL+  + G +   ++K  L L I +S+ L I   I+ P  +S         +  +  +  
Sbjct: 86  LLVFFSLGIAPKQIVKAFLPLCIFVSLVLLIFSLILIPASKSAYYSFLRAKKDRVDVNIQ 145

Query: 146 EENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILND 205
                 +L D L     K     +   +F       ++  I  +           I L  
Sbjct: 146 AGEFGQKLGDWLVYVGHKKKDIFSNLVLFSHKGLAFESFMIAQSGQIKNQEGVFGIELRK 205

Query: 206 GEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELL 265
           G+ +            +  +   +   +         +   +S+       +P+   +  
Sbjct: 206 GDAYFADKNQLRKVHFETLNLRNKLAFSAKKDAAYLHSHDYVSYWKKAFGPHPDKNQQ-- 263

Query: 266 ETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYI 325
                   +R TQ +   +F L S+       +   R   +  ++ + ++ G+++   ++
Sbjct: 264 --------RRFTQAILVSLFPLASLFLIPLFGIANPRFSKNLSYVYVLLAVGLYFLGMHV 315

Query: 326 IHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +       I +  +++     ++  +I + Y
Sbjct: 316 ASQDAPISGTILLPIVWMLGAYGLYRRIIVRFY 348


>gi|257457657|ref|ZP_05622824.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
 gi|257445043|gb|EEV20119.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
          Length = 116

 Score = 45.4 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/108 (12%), Positives = 38/108 (35%), Gaps = 2/108 (1%)

Query: 253 PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISL 312
                 +    +L  Y  EFHK+ +       F L++   +    +  Q        +  
Sbjct: 11  KEKQTQDEDKRILNLYWMEFHKKFSIPFGAFFFVLLAFAISSAGKVHNQGAGFFLGLLIA 70

Query: 313 SISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
              + +F G   +  ++  N      +++    + +  ++++ KK  +
Sbjct: 71  VAYWALFMGGQTLCLRLNWNGT--SAMWVPNIMVFAASVVLLGKKLFR 116


>gi|257457658|ref|ZP_05622825.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
 gi|257445044|gb|EEV20120.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
          Length = 229

 Score = 45.4 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 60/141 (42%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K   LYI++ +   F +  LF+ FI +V  IL     V S       +  +  Y +P V+
Sbjct: 7   KLLFLYIVKEMLLYFFVCFLFLFFIFFVNNILLLAEDVLSKQAPFKDVALLMLYSLPAVI 66

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF   + T   +     + E L ++  G S   L+ PVL + +L+SI  F + +++
Sbjct: 67  ANAAPFAALIGTLMGIGRFVSDLEFLSMNALGISPRFLMVPVLLVGLLVSIVSFFTNDVL 126

Query: 122 EPKCRSTIKQLSAKAQLALTF 142
            P      +++      +   
Sbjct: 127 LPASAVNFRRVYWDIATSTPA 147


>gi|207108562|ref|ZP_03242724.1| hypothetical protein HpylH_03299 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 206

 Score = 45.4 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 71/186 (38%), Gaps = 2/186 (1%)

Query: 44  ESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPV 103
            S   L+++  Y +P  +  + P  F       L+ ++ + ELL+  + G S   + K  
Sbjct: 4   VSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAF 63

Query: 104 LFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK 163
           + L++L+S  L +   I+ P  +S       + +  +  +        +L D L      
Sbjct: 64  VPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKDKIDINIRAGEFGQKLGDWLVYV--D 121

Query: 164 YNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF 223
              NN+   + +  ++         AQ G+I+       LN  + H        +  + F
Sbjct: 122 KAENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKVDF 181

Query: 224 KSYTLQ 229
           +   L+
Sbjct: 182 EELHLR 187


>gi|146299866|ref|YP_001194457.1| permease YjgP/YjgQ family protein [Flavobacterium johnsoniae UW101]
 gi|146154284|gb|ABQ05138.1| permease YjgP/YjgQ family protein [Flavobacterium johnsoniae UW101]
          Length = 486

 Score = 45.4 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 40/108 (37%), Gaps = 6/108 (5%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           +     +   +   +  + +  +++        +   I    A   A++R+     PI  
Sbjct: 348 IETTQKDLKDKQREINKHLTALYEKFVIAFACFLMFFIG---APLGAIIRKGGLGLPIVF 404

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
           ++ + F  F   +    ++ Q     P +  ++  F +S + +L+  +
Sbjct: 405 AV-LIFITFHFINTFGKRLSQEGGMSPFMGSWMSSFILSPLAILLTYR 451



 Score = 43.8 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 75/207 (36%), Gaps = 3/207 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+L+    +F    + + FI  +  +   I+ ++     L +++K   + +P +
Sbjct: 1   MKILDKYLLKTFLFTFTTVFVILFFIFILQTVWLFISELAGKDLDLLLVVKFLLFSMPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V P    + +     ++  N E   + ++G S    ++ ++    +LSI  F   N 
Sbjct: 61  IPLVLPLSVLLASIMTFGNLAENYEFAAMKSSGISLQRAMRVLIIFIFVLSIVAFWFANN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P               A     + E  F  +         K   N  +     +  + 
Sbjct: 121 VIPYAEYKFVNFRKNIAQAKPAMAIAEGQFNDVGTYNIKVNKKSGENGNILTGVTIHEKA 180

Query: 181 TQ---THKIYYAQSGSIDLDRQAIILN 204
                   +  A+ G +    ++ IL 
Sbjct: 181 NNIGENKTVIKAKDGELISSEKSSILK 207


>gi|15604603|ref|NP_221121.1| hypothetical protein RP769 [Rickettsia prowazekii str. Madrid E]
 gi|3861298|emb|CAA15197.1| unknown [Rickettsia prowazekii]
 gi|292572419|gb|ADE30334.1| Putative permease [Rickettsia prowazekii Rp22]
          Length = 362

 Score = 45.4 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 41/358 (11%), Positives = 101/358 (28%), Gaps = 9/358 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+  LY+ +   + F +    ++ +  +  I   +    +     +   +   Y IP +
Sbjct: 4   LKTLSLYLTKLYSKCFFIILFLLIGLLIISNIFDLLQKFKNIYVPFSFFWRFILYKIPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ ++ EL  I ++G     ++     + ++L I      N 
Sbjct: 64  LSQVSSLISFTSMLFFLRNLTKSNELTAILSSGIHIWQVLIIPCIVTLILGIICTTILNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS----KYNPNNTLQGIFIV 176
           I          L AK         L         + L         K+      +   I 
Sbjct: 124 ISTIGLQKYSLLEAKLTKKALSECLISESGLLFFESLNEHNQIIQTKFIDVAEKKLNNIT 183

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  +           +     +  +          K  S +  ++        +  
Sbjct: 184 ILFIDNNNSFLKRIDALYGIIDNKKLYLNRVKVSTKDEIKSYSNLTIQT---NLSINSLV 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              ++    ++  L     N           Y+  ++K+L + +  +   +++      +
Sbjct: 241 NKFMRPEMVSIWAL-PKLINELLNSGLSAINYQIYYYKQLFKPIMMMATVILASCFISLK 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                ++KI  + +              +      N   I  + L    I  I   +I
Sbjct: 300 QRCNSQEKILILGLFSGF-IAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFII 356


>gi|221059884|ref|XP_002260587.1| cysteine repeat modular protein [Plasmodium knowlesi strain H]
 gi|193810661|emb|CAQ42559.1| cysteine repeat modular protein, putative [Plasmodium knowlesi strain
            H]
          Length = 3417

 Score = 45.4 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/290 (10%), Positives = 73/290 (25%), Gaps = 24/290 (8%)

Query: 1    MKSFELYILRCIGRSFLMSC---------LFIVFI-----AWVIQILQRINLVSSSTESL 46
            M      I   +   FL+              + I      ++I  L  I +V S+  SL
Sbjct: 2296 MNLLARKIFFYMIVFFLIYLNYFCYVKRNFVFMGILKIWYFFIICFLPYIYIVESNHNSL 2355

Query: 47   NILLKISGYLIPTVLPMVTPFCFAMET--TNVLTSMNRNTELLIIDNTGTSRITLIKPVL 104
            +  L            +  P  F  +    N   +   N + + I             + 
Sbjct: 2356 SNHLFYF------HFFITLPMRFLTQYLKMNCFMNSYSNQQYIHIWYIQRYIKIAEPMID 2409

Query: 105  FLAILLSIFLFISENIIEPKCRSTIKQL--SAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
             + +               + + +  +   S +     +  Y +    F         I 
Sbjct: 2410 CVVLTAIFLTIYLVYTWLKRKKISTVERVISKQINKVHSKGYYQHRSDFYYHYYQKHVID 2469

Query: 163  KYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK 222
              N     +  ++    +    + + +        ++       +   ++   K     +
Sbjct: 2470 TINNKKGREIFWLRKWENASFEREHSSGEEGGKEQQKENTKQGKKKQERNKNGKITKTPQ 2529

Query: 223  FKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEF 272
              S T    S    +    +   +   +        +   E L  +  EF
Sbjct: 2530 RSSSTFNGNSTQCGSSAHISTSDDSFGIRRMEKKEVSSSNENLHNFNEEF 2579


>gi|297519577|ref|ZP_06937963.1| hypothetical protein EcolOP_18177 [Escherichia coli OP50]
          Length = 115

 Score = 45.0 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 47/108 (43%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + I  + +M+   +V ++ +I+ + ++      +         +   +P  + +
Sbjct: 7   LDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQI 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLS 111
             P    +     L  + + +EL+++  +G +R+ +   V+  AI L 
Sbjct: 67  FFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLV 114


>gi|261749398|ref|YP_003257083.1| hypothetical protein BPLAN_316 [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497490|gb|ACX83940.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 395

 Score = 45.0 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 57/208 (27%)

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIIL 203
           +   +  +      Y  +   +   + +   I        +   Y    +  L  +   L
Sbjct: 176 FFYRDNPYEGKTYSYQMVHFNSFIQSFKKPLIEYKNLDYYYDDSYKTLDTKKLMEKIHFL 235

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPE 263
                   S   K      F+   +  + + +    L  +   L   L         R +
Sbjct: 236 KKKNCQLYSDFQKLNYNSLFQKKKIFFKRSKNKKRSLLLHISILIDELQHQKKFLQNRKK 295

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
            L  Y+ E  K+ T  +  +I  LI              +      I   I   +     
Sbjct: 296 HLAKYQFELQKKFTFPVTCIIMFLIGAPLGAIIRKGGMGRPTLIAIIIFIIYHTLLTITQ 355

Query: 324 YIIHKIEQNPYYIPILYLFLFCISSIFL 351
               K E  P+    +  F+F   SI++
Sbjct: 356 NQGEKAEIWPWIGAWIPNFVFFPLSIWI 383


>gi|315638229|ref|ZP_07893411.1| integral membrane protein [Campylobacter upsaliensis JV21]
 gi|315481765|gb|EFU72387.1| integral membrane protein [Campylobacter upsaliensis JV21]
          Length = 350

 Score = 45.0 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/290 (10%), Positives = 75/290 (25%), Gaps = 11/290 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    +V     I +L     +     S N++L    ++  + 
Sbjct: 1   MSIFFHFISSIYLKNFFILFFALVGFYCGIDLLLNFKDL---PASANLILLYVLFVGFSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P            +M RN E + +   G S+  +I      A+L           
Sbjct: 58  VTYILPISLIFALVLSFLTMIRNNEFVSLYALGLSKNRVIIYPFLWALLFCFIYVGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    + +     L              L  +      K       + + I   +D
Sbjct: 118 SFAYANEYKRSILKNGVLNKKS------SDIFLKFNEEFVYVKSLDEGVAKELKIFSLKD 171

Query: 181 TQTHKIYYAQSGSIDLDRQAIILND--GEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                +  A+    + +   +   +        +          F +             
Sbjct: 172 GNLSHLIQAKRALFNENSWLLEEGNITYIPKEFALGENGYKSENFANLETLEGFKPKLAK 231

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
            + +  +   +    +    + +       +   +K +    F     LI
Sbjct: 232 SVASGKEYSIYDAYQSLILFDSQGLNTRNVKITIYKLIFAPFFAPFLMLI 281


>gi|163785437|ref|ZP_02180046.1| hypothetical protein HG1285_10847 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879293|gb|EDP73188.1| hypothetical protein HG1285_10847 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 313

 Score = 44.6 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 39/325 (12%), Positives = 91/325 (28%), Gaps = 15/325 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F  Y+ +     FL     I  +    Q+L   +++      +    +    +  + 
Sbjct: 1   MKLFYKYLAKKFFYYFLTFLGIISLLIISSQMLNLPSIL--YHLDIFKFFQSILLINISF 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +   F +A+    +   +  N E+  I + G S+   +K ++ L I+  +        
Sbjct: 59  LKLQFLFAYALSFLFLGYYLRENREIYAIYSAGISKNNFLKFIIGLNIIAVVVGLFISLY 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK      +             L+   F  L  D  + +S  +       +       
Sbjct: 119 VVPKANRERIKFITVNVKKYFLEALQPKNFTTLPGDYIVYVSDKDKEKMKNVVIY----- 173

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                 +   +         +IL +G +          S   F +   +    + +    
Sbjct: 174 -NQKNGFLITAKKAFFKGTNLILYEGMLQ-------VPSKHGFNALIYKRYIFDLNIEYE 225

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K        L +      +          +   +R+   L  +    +        +  R
Sbjct: 226 KKYSIEDFRLKDLLTIAVSSNNSEKLKAIAVLSERIAYVLPFLFIPTMFFFIGLNISKDR 285

Query: 301 QRKKIHPIFISLSISFGVFWGFSYI 325
                  + I +      ++    I
Sbjct: 286 DFILSVALGILVIYISINYYLIKLI 310


>gi|332877577|ref|ZP_08445321.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332684426|gb|EGJ57279.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 150

 Score = 44.2 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/152 (9%), Positives = 46/152 (30%), Gaps = 3/152 (1%)

Query: 209 HRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETY 268
            +       I   +      + +  +   +   A ++NL  L              L  Y
Sbjct: 1   RKIETADDIIERKEQLDTIFKFKIDDLMPMEYTAENKNLFELDKFIERERMKGSPNLNMY 60

Query: 269 RSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
               ++R        I  LI +      ++ ++      + + + + F   +        
Sbjct: 61  LLVKYRRWGAISTAFILTLIGVAV---SSVKKRGGMGINLMVGVVVGFTFVFFDRVFGTL 117

Query: 329 IEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
            + +    P++ + +  +  + L ++  +  +
Sbjct: 118 AQTSGGLSPLMAVLIPNLIFLTLAILLLRKVR 149


>gi|224373131|ref|YP_002607503.1| putative permease YjgP/YjgQ [Nautilia profundicola AmH]
 gi|223589255|gb|ACM92991.1| putative permease YjgP/YjgQ [Nautilia profundicola AmH]
          Length = 340

 Score = 44.2 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 106/353 (30%), Gaps = 18/353 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           +  YI++   ++FL+    + F   +I  +   + +  S+    + L         +   
Sbjct: 2   YFNYIIKKYAKNFLLILFSLAFFFVIIDFIANFSKLPDSSNLQVLYLYYIVLYSFDMFY- 60

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P          +  M +  EL+   + G S   ++KP L  + L+       ++    
Sbjct: 61  --PLAIVFSFLFTMYYMIKFNELVSFYSLGFSVKKILKPFLTFSFLIFFIFIALDSGKMA 118

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             R     +  K Q + T  +++ N        +   + +               +    
Sbjct: 119 YVREYADSILNKRQYSNTNLFIKFNDKIIYIKKIKPILKEAIDIRVFVLKDGKVKKIISA 178

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            K  +        + +   +ND ++ +                 +         IV    
Sbjct: 179 KKAVFVNDIWQAKNAEITFINDKKITKI-------------RNDIFFLKNFKPKIVSNLK 225

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             N   L +       ++   + T  S    ++   L  +  GLI +         R   
Sbjct: 226 KLNSISLYDAIIAIKIFKDVNVNTLLSMVFYKIFTALSLI--GLIIVFIFQVPIHQRISN 283

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               +  S+ ++  ++     I    +Q      +L +  F I S  + ++ K
Sbjct: 284 VSLFLVKSVFLTILIWGIQLMIYKFSKQGVISPYVLMVPCFIIYSYGVYLLIK 336


>gi|291276764|ref|YP_003516536.1| YjgP/YjgQ family permease [Helicobacter mustelae 12198]
 gi|290963958|emb|CBG39797.1| putative integral membrane protein, permease YjgP/YjgQ family
           [Helicobacter mustelae 12198]
          Length = 338

 Score = 44.2 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 115/350 (32%), Gaps = 21/350 (6%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   I + F    + + FI+ V+ ++   N+      +   LL +  YL+P  +  + P
Sbjct: 5   YLFGSIAQIFFPFFIVLFFISSVVLLISIANITLVVKMNFMDLLLVFLYLMPGTVFFIIP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F       L+ ++ + ELL+  + G S   ++   + +A ++S+ L      + P  +
Sbjct: 65  ITFFAACVLGLSRLSFDYELLVFFSLGVSPRKILAYFIPIAGIVSLVLLFFSLALIPLSK 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S      A+ +  +  +    +L  +L D L         +N  + + +    D      
Sbjct: 125 SAYSDFIAEKRTKIDVNIRAGDLGQKLGDWLVYI--DSIKDNEYRDLVLFSGSDLGQESF 182

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             AQ G ++       L+          + ++  + F++  +           +K  + +
Sbjct: 183 VVAQKGRVENLAGVFRLSLQNGDAYFAKNNELQKVNFQNMMI--------QSEIKKINLS 234

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
              L+    +    +      +       L          L  I         R    ++
Sbjct: 235 SYDLVAYWKSAFEGKKSQARRFSQAIMTSLFPLASIFFIPLFGIA---NPRFQRNLSYVY 291

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            +   +    GV          + +N  +  I  L L      +    KK
Sbjct: 292 ILSAVVGYFAGVHI--------LSENAPFFGIFALPLAWFFLGYYFFRKK 333


>gi|167004981|ref|ZP_02270739.1| hypothetical protein Cjejjejuni_01670 [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 351

 Score = 43.8 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 38/362 (10%), Positives = 95/362 (26%), Gaps = 16/362 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV-SSSTESLNILLKISGYLIPT 59
           M  F  Y  R + + F      ++     I +L     +  ++   L  ++ +S   +P 
Sbjct: 1   MDIFSFY-FRDLFKKFFYYIFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY 59

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           VLP+   F   +   +++ +    +   +  +              +       LF    
Sbjct: 60  VLPISLIFALVVSLISMIRANEFVSLYALGLSRN----------YVILFPFLWALFFCCI 109

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I     S       K  +    + + ++    L  +          N       I    
Sbjct: 110 YIGLNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFN 169

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI----SKDISIMKFKSYTLQTESANS 235
               +   +  + +   + ++ IL DG +          +  + I  F            
Sbjct: 170 INDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPK 229

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
               + +N          +      +    +T +   +K +    F     LI       
Sbjct: 230 IIEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFFAPFLMLIMYYFFPV 289

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            A       +  +   +++           + +       I I+   +        +  K
Sbjct: 290 IARFFNLAIVTFVTFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYMYYK 349

Query: 356 KK 357
            +
Sbjct: 350 HR 351


>gi|221060807|ref|XP_002261973.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193811123|emb|CAQ41851.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 692

 Score = 43.8 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 59/241 (24%), Gaps = 8/241 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y +       L+  + +  +         + ++       +++L + G L   +
Sbjct: 460 MNKIYKYAVYSFFGELLVISIIVFSLFI-------LRIIIKDNNKFSVILTMYGILY-KI 511

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              +      +    +L+          I     +          L I L +  +  +NI
Sbjct: 512 FCYIFAHYVLVMGLYILSIYYNIYRSKDISENNFNFFCYHYVCNNLHIHLLMLFYAFQNI 571

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I     +          +      + E +  +     Y      +P +           +
Sbjct: 572 IFTINDTFNCIRMMFIIVKHIIVRIYEKITCKNFITFYELKEDKSPLSLNCMNKFKKKCN 631

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                        ID+D    +  D        + +          T +    N    + 
Sbjct: 632 MNNKCCRDKTCVEIDIDEIHELEYDKSQMPFPSLHQKPYCKNLDIKTYEQSLLNMRNPIF 691

Query: 241 K 241
           K
Sbjct: 692 K 692


>gi|34763638|ref|ZP_00144567.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27886691|gb|EAA23835.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 176

 Score = 43.8 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 56/133 (42%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++YI +   + FLM+ +  + +  + Q  + I  ++    +   +      L+P + 
Sbjct: 3   KKMDIYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLAGGEIFDYIINLLPKMF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     ++ M  N E++ +  +G   + +++  L +A ++S+ +F   N I
Sbjct: 63  VETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFINNSI 122

Query: 122 EPKCRSTIKQLSA 134
             K  + I     
Sbjct: 123 YTKSLAKINFYRR 135


>gi|152993636|ref|YP_001359357.1| hypothetical protein SUN_2059 [Sulfurovum sp. NBC37-1]
 gi|151425497|dbj|BAF73000.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 361

 Score = 43.4 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 105/358 (29%), Gaps = 15/358 (4%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
             Y+ +   ++ L     + F    I   Q    +     S N  +    Y+    L ++
Sbjct: 11  FRYLAKHYIKNLLAILFGLSFAFAAIDYFQYTEELQG---SWNYKILYIFYMWQEALGLL 67

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI--SENIIE 122
            P            +  +   +  +   G ++  L  PV  +A L         +     
Sbjct: 68  YPLAIVFAVIMTKLTFVKQNTMGALHAFGYTKKRLFSPVFVIASLTYAVFIYLHTTEFSY 127

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
            K ++ +   +      +   + + N  F     L   + K       +          +
Sbjct: 128 AKDKANMLLKNQVHAYNVNDMFFKYNDTFVYIKKLNPIVKKIKGITIFKVAGYQVRYTIK 187

Query: 183 THKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +     I  +   +  I  +GE+ R S   K+             ES      + 
Sbjct: 188 APVAVFNGEEWIAQNATVKTHIYQNGELVRYSMDQKESIATLHGYKPKIIESLYEGKALN 247

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  N   LL         +    +  R+  + ++   LF +   LI        A + 
Sbjct: 248 IIDAYNTWKLL-------EIQHLDSDKIRATIYNKVIVPLFALALLLILFFKLPFHARMM 300

Query: 301 QRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
               +    + ++    GV +G   I       P +  ++ + L  + +I++    ++
Sbjct: 301 NFGVVVAFSLGVTFLIWGVLFGLEQIGLNGVLKPEFTAVMPIVLLWLYAIYVYFTDER 358


>gi|306842049|ref|ZP_07474722.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
 gi|306287890|gb|EFM59310.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
          Length = 286

 Score = 43.4 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 78/290 (26%), Gaps = 14/290 (4%)

Query: 74  TNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIK--- 130
              L S+NR  EL++  + G S    + P  F A+L  +      N +     S  +   
Sbjct: 1   MATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPLAAHGFSKAEEIA 60

Query: 131 -QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYA 189
                     ++            + +  I         T          D Q +     
Sbjct: 61  AMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFIQFDEQKNIKDRY 120

Query: 190 QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSF 249
            + +  L      L D          ++   ++    + Q         +        + 
Sbjct: 121 DARTATLQDGYWELTDVMRF---ARGQEPQKLETFRISTQLRPEYVEEKLASPETIPFTQ 177

Query: 250 LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIF 309
           L +               +  ++   L      +   LI+   +     VR  +    I 
Sbjct: 178 LRHK-IEVARSFGYSANAFDMQYQSLLALPALLMAMTLIAATVSL--KFVRFGQSGAMIL 234

Query: 310 ISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL---LMIKK 356
             +   F ++   S ++       +  P +  ++  + + F     ++ K
Sbjct: 235 GGVIAGFVLYVV-SVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLLHK 283


>gi|29840523|ref|NP_829629.1| YjgP/YjgQ family protein [Chlamydophila caviae GPIC]
 gi|29834872|gb|AAP05507.1| YjgP/YjgQ family protein [Chlamydophila caviae GPIC]
          Length = 367

 Score = 43.4 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 121/366 (33%), Gaps = 12/366 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-----VIQILQRINLVSSSTESLNILLKISGY 55
           M  ++ Y+L     S L+S + + F+ +      +  ++  +   +S  SL + +     
Sbjct: 1   MYIWKRYVLTKFWLS-LVSLIVLAFVFYASIHHSLHAIKGNSTALASGASLKLSVLYYLS 59

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
            I      + P   A+ TT  L SM    E+L++  +G S  +L  P++  + ++++ L+
Sbjct: 60  QIALKAEFLIPQLVAVATTITLFSMQNKREVLLLQASGLSLKSLTAPLIRSSFIITLLLY 119

Query: 116 ISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
            +   + P C           +  L  +  +    +  D  + +  S      TL  +F 
Sbjct: 120 ANFQWLHPICEKISTTKEHMDRGTLDKAQDKVPALYLKDQTVLLYSSIEQKALTLNKVFW 179

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           + +  T       A +         +I           +S+   + +F            
Sbjct: 180 IKNPKTIYTMEKLAFTTPSLPIGLDVIRFSETESGTMELSEFSDMKEFPEIEFGFYDNPF 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRP------ELLETYRSEFHKRLTQWLFPVIFGLIS 289
           S I        LS      P N           + + +  S F+  L   L  +   ++S
Sbjct: 240 SKIFTAGGKNRLSESFRAIPWNATGLGLSTTIPQRISSLLSTFYYMLISPLACISAMILS 299

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                + + V      + + +    +F VF     ++      P    +L+  +      
Sbjct: 300 AYLCLRFSRVPTVTLAYLVPLGTINTFFVFLKAGMVLSNSSVLPILPVMLFPLVVLAIFT 359

Query: 350 FLLMIK 355
                K
Sbjct: 360 NYAYAK 365


>gi|253827767|ref|ZP_04870652.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511173|gb|EES89832.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 314

 Score = 43.1 bits (99), Expect = 0.063,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 103/315 (32%), Gaps = 16/315 (5%)

Query: 44  ESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPV 103
            S   LL +  Y +P ++  V P  F +  T  L+ ++ + EL ++   G +   +IK  
Sbjct: 16  ISFFELLSLYFYTLPLMIFFVIPLSFFVACTLSLSRLSFDYELPVLFALGMNPSKIIKIF 75

Query: 104 LFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK 163
             +A L+S  LFI   ++ P   +  +Q   + + ++  +        +L D L      
Sbjct: 76  FPIAALVSFSLFILSLVLTPLSDTAYRQFLEERKNSININLQAGEFGQKLGDWLVYVQKS 135

Query: 164 YNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF 223
                      IV     +   + ++ +  I      +     +     P    +  + F
Sbjct: 136 K---EDSSYENIVLLSFAKEGGMIFSDNAKIVNQMGVMEAILEKGSIYRPKEDFVEKILF 192

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
            +  +++       + L             +      R              L+ ++   
Sbjct: 193 DTLIIRSSITAIDEVDLGVIGYWKRAFYENDRQKKTLRN-------------LSMYVMMS 239

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
            F L+S+       +   R + +   +      G+F+   Y+               ++L
Sbjct: 240 CFPLVSLFFFPLLGVKNPRYQKNYTILQAMGVIGIFYALMYLFASYLPLLGMFIFPIIWL 299

Query: 344 FCISSIFLLMIKKKY 358
                +F  +IKK Y
Sbjct: 300 LLGYLLFERVIKKYY 314


>gi|255536803|ref|XP_002509468.1| kinase, putative [Ricinus communis]
 gi|223549367|gb|EEF50855.1| kinase, putative [Ricinus communis]
          Length = 728

 Score = 43.1 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 88/322 (27%), Gaps = 19/322 (5%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAME-TT 74
           FL+  + +  I +  Q +   + V +   S ++LL     +   +L +     F +    
Sbjct: 10  FLLVLVLVSIILFCQQPILATDFVYNGFNSSSLLLYGYAVIESRILSLTNETTFTIGRAL 69

Query: 75  NVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN-IIEPKCRSTIKQLS 133
                  ++     +    TS I  + P   +     +         IE    +    L 
Sbjct: 70  YPSKIRTKDPNSSYVYPFSTSFIFAMAPYKNVLPGHGLVFIFVPIAGIEGTTTAQNLGLF 129

Query: 134 AKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGS 193
            +       +++    F    +  +  I+  +    +  +    + D          S  
Sbjct: 130 NRTNDGNPNNHVLGIEFDVFSNQEFNDINDNHVGIDVNSLTSRFAEDAGYWLDDRRSSSE 189

Query: 194 IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNP 253
                + + LN+GE ++          + +    +    A   T        N+S  L+ 
Sbjct: 190 DMKSFKRLKLNNGENYQV--------WIDYADSLINITMAPVGTRRPSRPLLNVSIDLSG 241

Query: 254 NPNNPNYRPELLETYR-SEFHKRLTQWLFPVIFGL--------ISIVAADKRALVRQRKK 304
                 Y      T R  E HK L        F L        +      K +  R +  
Sbjct: 242 IFEEEMYVGFTASTGRLVESHKILAWSFSNSDFSLSDRLITVGLPSFVLPKGSFFRSKGF 301

Query: 305 IHPIFISLSISFGVFWGFSYII 326
           I        +        +   
Sbjct: 302 IAGATAGSFVVIVSAALITLFF 323


>gi|15618903|ref|NP_225189.1| hypothetical protein CPn0995 [Chlamydophila pneumoniae CWL029]
 gi|15836526|ref|NP_301050.1| hypothetical protein CPj0995 [Chlamydophila pneumoniae J138]
 gi|16752032|ref|NP_445398.1| hypothetical protein CP0860 [Chlamydophila pneumoniae AR39]
 gi|33242364|ref|NP_877305.1| hypothetical protein CpB1032 [Chlamydophila pneumoniae TW-183]
 gi|4377324|gb|AAD19132.1| CT838 hypothetical protein [Chlamydophila pneumoniae CWL029]
 gi|7189772|gb|AAF38649.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
 gi|8979368|dbj|BAA99202.1| CT838 hypothetical protein [Chlamydophila pneumoniae J138]
 gi|33236875|gb|AAP98962.1| hypothetical protein CpB1032 [Chlamydophila pneumoniae TW-183]
 gi|269302795|gb|ACZ32895.1| putative permease, YjgP/YjgQ family [Chlamydophila pneumoniae
           LPCoLN]
          Length = 366

 Score = 42.7 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 115/359 (32%), Gaps = 12/359 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW--VIQILQRINLV--SSSTESLNILLKISGYL 56
           M  ++ ++L     + L S L +  I +  +   L  +     ++S  S+ + +      
Sbjct: 1   MLIWKRHLLTRFWFA-LTSLLVLALIFYASIHHSLHTLKGASTAASGASVKLSILYYLAQ 59

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           I      + P   A+ TT+ L +M    E++++  +G S  +L+ P+L    ++ + L+ 
Sbjct: 60  ISLKAEFLMPQLVAVATTSTLFAMQNKREIILLQASGLSLKSLMHPLLLSGAVIMMVLYA 119

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           +   + P C           +        +    +  D  + +  S      TL  +F +
Sbjct: 120 NFQWLHPICEKISITKENMDRGTTDKEQGKIPALYLKDQTVLLYSSIEPKTLTLNNVFWI 179

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
               T       A +         +            + +   + +F            S
Sbjct: 180 KDPKTIYTMEKLAFTTLSLPIGLNVTQFFANDSENLELKEFFDMKEFPEIEFNFYENPFS 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRP------ELLETYRSEFHKRLTQWLFPVIFGLISI 290
            +    N   LS      P N           + + +  ++F+  L   L  +   ++S 
Sbjct: 240 KLFSAGNKNRLSEFFKAIPWNATGLGLSTQVPQRILSLLAQFYYVLISPLACMAAIILSA 299

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
               + +        + I +     F VF     ++      P   P++   L  +  +
Sbjct: 300 YLCLRFSRTPTVTLAYLIPLGTVNIFFVFLKAGIVLASSSVLPTL-PVMAFPLIVLFLL 357


>gi|224373192|ref|YP_002607564.1| putative permease YjgP/YjgQ [Nautilia profundicola AmH]
 gi|223589644|gb|ACM93380.1| putative permease YjgP/YjgQ [Nautilia profundicola AmH]
          Length = 323

 Score = 42.7 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 103/339 (30%), Gaps = 28/339 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y++      F+M  L +  +  +I I+   N+ ++   +   L K+    +P V
Sbjct: 1   MDRLSKYLISGFWPIFIMIFLILFLVTSIIIIISIANITANIHITFGELFKMYMLSLPKV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +     F +   ++    +   EL+ + ++G    TL+KP LFL++LL+I   +   I
Sbjct: 61  LFITLSISFFISAVSLFAKHSETQELIALFSSGVKPYTLLKPFLFLSLLLTIVNLLILFI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P  +   K    + Q A  F++    +  R  +      SK         ++     +
Sbjct: 121 SIPYAKVAFKNFKNQKQQAAKFNFQTSQISQRFGNWNIFTSSKKGKTYENIILY-----N 175

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            + +++  A+   +      +     + +  +     I          +   ++ S    
Sbjct: 176 NKENQLILAKYAELKNKNGYLNFELKKGNVYAFDKSTIINFGKMQINQKIPKSSYSIFRF 235

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
               +    L                                +   LI  +        R
Sbjct: 236 SEYFKKFKELFA-----------------------FYLPFALLPLSLIFFIPPISFFHPR 272

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
             K    I+    I   +          +      +  +
Sbjct: 273 IYKNRSLIYAIALIVIYLVLTKITSSLAVNSLICLLFFI 311


>gi|332088227|gb|EGI93348.1| hypothetical protein SD15574_3353 [Shigella dysenteriae 155-74]
          Length = 109

 Score = 42.7 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 45/106 (42%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL 106
           L M+ P    +     L  M  ++E+  I   G  R    KP    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGAVRDACTKPFFIW 106


>gi|41406992|ref|NP_959828.1| hypothetical protein MAP0894c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395343|gb|AAS03211.1| hypothetical protein MAP_0894c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 207

 Score = 42.3 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 269 RSEFHKRLTQWLFPVIFGLISIVA------ADKRALVRQRKKIHPIFISLSISFGVFWGF 322
                 R +  LF +  G +++V            L R+    + +     ++F  + G 
Sbjct: 113 LIAGWWR-SDRLFCIAVGFLALVFAATTVSGVIGLLQRRSVSRYLLLAGALVAFLTYIGV 171

Query: 323 SYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                ++    + +P+L         + LL   K++
Sbjct: 172 FIAGARVAWVVHLLPVL---PIATVVLVLLPQAKRW 204


>gi|328676744|gb|AEB27614.1| Permease YjgP/YjgQ family protein [Francisella cf. novicida Fx1]
          Length = 276

 Score = 42.3 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 91/275 (33%), Gaps = 12/275 (4%)

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           + +    G + + ++K  L   + L+I   I+   + P  + T+    A        S +
Sbjct: 1   MFVTLAGGITWMQIVKNTLKPVVALTIITLITVMYLNPLSKQTLDIYKASLSAKALLSSI 60

Query: 146 EENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAII--L 203
            +    +  D   I I   + N         ++     +K+  A +  I  D+ A     
Sbjct: 61  TDQKIIKAPDGKIIYIGNKSGNTLSDVFLYQNTPQDGEYKVMTAPTAKIVSDKTAAYIDF 120

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPE 263
            +  ++ K+  + + S    K         +         D+    L             
Sbjct: 121 MNVNIYTKNSQNSEYSYDNAKKAIYTIFDNSDRDYNHDRVDR----LYMHTLIENFNDKT 176

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
               Y++EF  R+   +  ++    S++A     L  ++ K   +  S+ +   ++   +
Sbjct: 177 NGTAYKAEFFGRINNAISVIVS---SLLALALCRLRPRQNKYAKLLPSVVV-LAIYLCTN 232

Query: 324 YIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
             I+ +  N      +  +L     +   +  I+K
Sbjct: 233 MFINTLMANGSVPVWIGFWLPHIFFTIFAVRTIRK 267


>gi|254773952|ref|ZP_05215468.1| hypothetical protein MaviaA2_04659 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 196

 Score = 42.3 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 269 RSEFHKRLTQWLFPVIFGLISIVA------ADKRALVRQRKKIHPIFISLSISFGVFWGF 322
                 R +  LF +  G +++V            L R+    + +     ++F  + G 
Sbjct: 102 LIAGWWR-SDRLFCIAVGFLALVFAATTVSGVIGLLQRRSVSRYLLLAGALVAFLTYIGV 160

Query: 323 SYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                ++    + +P+L         + LL   K++
Sbjct: 161 FIAGARVAWVVHLLPVL---PIATVVLVLLPQTKRW 193


>gi|167949851|ref|ZP_02536925.1| permease YjgP/YjgQ [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 136

 Score = 42.3 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 29/111 (26%), Gaps = 1/111 (0%)

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
                ++ L                Y   F  +L   L  ++   +SI            
Sbjct: 3   PHMLPAWDLWAYVAFLKQNGLSAAQYEVAFWSKLVVPLVTLVMLFLSIPFVFGPLRSVGI 62

Query: 303 KKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
            +       +   F +F   F+Y+    E N  +       LF +    + 
Sbjct: 63  GQRVFTGAVVGTLFFMFNRVFTYLGVVYEFNALFTAAFPTLLFLLRGAVVF 113


>gi|118464849|ref|YP_880326.1| hypothetical protein MAV_1072 [Mycobacterium avium 104]
 gi|118166136|gb|ABK67033.1| conserved hypothetical protein [Mycobacterium avium 104]
          Length = 196

 Score = 42.3 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 269 RSEFHKRLTQWLFPVIFGLISIVA------ADKRALVRQRKKIHPIFISLSISFGVFWGF 322
                 R +  LF +  G +++V            L R+    + +     ++F  + G 
Sbjct: 102 LIAGWWR-SDRLFCIAVGFLALVFAATTVSGVIGLLQRRSVSRYLLLAGALVAFLTYIGV 160

Query: 323 SYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                ++    + +P+L         + LL   K++
Sbjct: 161 FIAGARVAWVVHLLPVL---PIATVVLVLLPQTKRW 193


>gi|89898055|ref|YP_515165.1| hypothetical protein CF0248 [Chlamydophila felis Fe/C-56]
 gi|89331427|dbj|BAE81020.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
          Length = 367

 Score = 42.3 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 121/366 (33%), Gaps = 12/366 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-----VIQILQRINLVSSSTESLNILLKISGY 55
           M  ++ Y+L     S L+  + + FI +      +  ++      +S  SL + +     
Sbjct: 1   MYIWKRYVLTKFWLS-LVFLIVLAFIFYASIHHSLHAIKGNATPLASGASLKLSILYYLS 59

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
            I      + P   A+ TT  L SM    E+L++  +G S  +L  P++  + ++++ L+
Sbjct: 60  QIALKAEFLIPQLVAVATTLTLFSMQNKREVLLLQASGLSLKSLTAPLIVSSFIITLLLY 119

Query: 116 ISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
            +   + P C           +  L  +  +  + +  D  + +  S      TL  +F 
Sbjct: 120 ANFQWLHPICEKISTTKEHIDRGTLDKAQDKVPVLYLKDQTVLLYSSIEQKTLTLNKVFW 179

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           + +  T       A +         +I   G       +S+   + +F            
Sbjct: 180 IKNPKTIYTMEKLAFTTPSLPIGLDVIRFSGTESGNMELSEFSDMKEFPEIEFGFYDNPF 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRP------ELLETYRSEFHKRLTQWLFPVIFGLIS 289
           S I        LS      P N           + + +  S F+  L   L  +   ++S
Sbjct: 240 SKIFTAGGKNRLSESFRAIPWNATGLGLSTTVPQRILSLLSTFYYMLISPLACISAMILS 299

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                + + V      + + +    +F VF     ++      P    +L+  +      
Sbjct: 300 AYLCLRFSRVPTVTLAYLVPLGTINTFFVFLKAGIVLSNSSVLPTLPVMLFPLIALAIFT 359

Query: 350 FLLMIK 355
                K
Sbjct: 360 NYAYAK 365


>gi|194323556|ref|ZP_03057333.1| hypothetical protein FTE_1717 [Francisella tularensis subsp.
           novicida FTE]
 gi|208779047|ref|ZP_03246393.1| hypothetical protein FTG_1341 [Francisella novicida FTG]
 gi|194322411|gb|EDX19892.1| hypothetical protein FTE_1717 [Francisella tularensis subsp.
           novicida FTE]
 gi|208744847|gb|EDZ91145.1| hypothetical protein FTG_1341 [Francisella novicida FTG]
          Length = 283

 Score = 42.3 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 91/288 (31%), Gaps = 7/288 (2%)

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTI 129
            +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    I P  +  +
Sbjct: 1   MVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGYIAPILQRQV 60

Query: 130 KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYA 189
                       +    +      + +     +       +Q   + + R  ++      
Sbjct: 61  DTNMVTYNTHDLWFKTPDGFMNIANIEPTKGKAYGIRKFMVQDNKVREIRYAESATYIND 120

Query: 190 QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSF 249
            S ++   R+ I          S   K I I+   +  + +     S   +   + N   
Sbjct: 121 ASANVFNIRKIIF-------PASDGQKHIDIVTNMTNAVWSNPIPISVAKVITINDNDYL 173

Query: 250 LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIF 309
             +   +      +  ++   +F + + Q L  +I  L+++  +              + 
Sbjct: 174 NFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGSTRSSTLILKLLLG 233

Query: 310 ISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                +F +       I  I   P  +      +  +  +  L IK K
Sbjct: 234 AFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSK 281


>gi|71083417|ref|YP_266136.1| permease YjgP/YjgQ family protein [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91762160|ref|ZP_01264125.1| Predicted permease YjgP/YjgQ family protein [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|71062530|gb|AAZ21533.1| Predicted permease YjgP/YjgQ family protein [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|91717962|gb|EAS84612.1| Predicted permease YjgP/YjgQ family protein [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 357

 Score = 42.3 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 118/358 (32%), Gaps = 8/358 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK++  +++     S L   +    I  +  IL++I    +   S   L  +S    P+V
Sbjct: 1   MKTYIKFLINLFNISLLKIFITFFIIILITNILEQIEFFKNIDLSFFYLFFLSLLNTPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKP---VLFLAILLSIFLFIS 117
           L  + PF F + T      +    EL +   +G + I +IK      F+  ++ +  F +
Sbjct: 61  LFEILPFIFLLGTQVFFIHLIDKNELQVFKYSGLNNIKIIKILGLYSFILGIIMVIFFYN 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
            + I       IK   +     L              +D    I+    NN       + 
Sbjct: 121 GSSILKNSYLLIKNNYSGDNKYLAVITENGLWIKDEINDNINIINARQVNNEFLLNVSIT 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +     +   QS  +D+  +   + +      +      S +         +    ++
Sbjct: 181 KFNKDFDLVEVLQSERVDITSKKWKIFN----PITLKGNSQSTLNELILHSNFDLQKINS 236

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +    +  ++  L+    +  +     +    S   K ++  ++  +  + S +      
Sbjct: 237 LFSNLSSLSIIDLITLRKSYMSLN-YSVTDINSHLLKIVSYPVYLTLITIFSAIIMFNIG 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
             +       + I LS+       F  ++   E+ P  + I    +      F+ +IK
Sbjct: 296 YQKNTFYKITLGIFLSVIIYYINNFLSVLGTNEKIPVTLSIFLPLIILSIINFISIIK 353


>gi|328676743|gb|AEB27613.1| conserved membrane protein of unknown function [Francisella cf.
           novicida Fx1]
          Length = 283

 Score = 42.3 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 90/288 (31%), Gaps = 7/288 (2%)

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTI 129
            +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    I P  +  +
Sbjct: 1   MVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTIVFGGYIAPILQRQV 60

Query: 130 KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYA 189
                       +    +      + +     +       +Q   + + R  +       
Sbjct: 61  DTNMVTYNTHDLWFKTPDGFMNIANIEPTKGKAYGIRKFMVQDNKVREIRYAENATYIND 120

Query: 190 QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSF 249
            S ++   R+ I          S   K I I+   +  + +     S   +   + N   
Sbjct: 121 ASANVFNIRKIIF-------PASDGQKHIDIVTNMTNAVWSNPIPISVAKVITINDNDYL 173

Query: 250 LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIF 309
             +   +      +  ++   +F + + Q L  +I  L+++  +              + 
Sbjct: 174 NFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPLSIGSTRSSTLILKLLLG 233

Query: 310 ISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                +F +       I  I   P  +      +  +  +  L IK K
Sbjct: 234 AFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSK 281


>gi|227504780|ref|ZP_03934829.1| ABC-2 type transporter [Corynebacterium striatum ATCC 6940]
 gi|227198630|gb|EEI78678.1| ABC-2 type transporter [Corynebacterium striatum ATCC 6940]
          Length = 707

 Score = 41.9 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 29/71 (40%)

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
           L  ++FG ++++          R  +    +   I+F +  G + +   +  +P   P++
Sbjct: 521 LLVLVFGFLAMLLLSMTLPYYLRGILPAFALVSGINFLLLLGMALMSTLMGWHPASWPMM 580

Query: 340 YLFLFCISSIF 350
              L  I+ + 
Sbjct: 581 LGVLAAIAMVG 591


>gi|262363205|gb|ACY59926.1| membrane protein [Yersinia pestis D106004]
          Length = 116

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 269 RSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
           R+EFH RLT  +  VI  L+         +  ++ ++  +  ++ +    F   S +  K
Sbjct: 15  RAEFHWRLTLIVSVVIMALL---VVPLSVVNPRQGRVLSMLPAMLLYLIFFLLQSSLRSK 71

Query: 329 IEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
              N    P+++++    + + L +I   +
Sbjct: 72  AG-NGQLDPLVWMWAVNGAYLALAIILNLW 100


>gi|167621692|ref|YP_001672200.1| hypothetical protein Caul_5426 [Caulobacter sp. K31]
 gi|167351815|gb|ABZ74541.1| conserved hypothetical protein [Caulobacter sp. K31]
          Length = 230

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 67/171 (39%), Gaps = 4/171 (2%)

Query: 52  ISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLS 111
           ++  L+P  L +  P  F +    V+T+++ ++E+  +   G S   ++ P + + +LL 
Sbjct: 1   MAANLLPHYLGLALPVAFFIALFIVITTLSDSSEIDALLAGGRSLTRIVAPFVVIGVLLG 60

Query: 112 IFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ 171
           +F  I    ++P  R   + +   A  A     L    F    + L            L 
Sbjct: 61  LFSVIVFGYLQPYSRYAFRSVMHAAITAGWNGRLPGRAFVEDGEQLITADESVAAGQALM 120

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAI----ILNDGEVHRKSPISKDI 218
           GIFI      +  ++  A S S+  +        +L DG    +    +D+
Sbjct: 121 GIFIKRPDANKREEVIAASSASLVAEPDGEKVALMLTDGRRTAQDGQGEDL 171


>gi|159040227|ref|YP_001539480.1| hypothetical protein Sare_4736 [Salinispora arenicola CNS-205]
 gi|157919062|gb|ABW00490.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
          Length = 643

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/89 (11%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 276 LTQWLFPVIFGLISIVAADKRALV---RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
           L      ++  ++  +   + A     R    +     +++I       + + +  I   
Sbjct: 409 LIFRWAVIVAPILGTIGLLRPASTGLRRLGNAVVAAVFNIAIFGTGAAIYLFAVDLIMST 468

Query: 333 PYYIPILYLFLFCISSIFLLMIKKKYTKI 361
           P     L + L  +  +   ++ + Y +I
Sbjct: 469 PTLPGWLQVVLVWLCGLVGWLLLRPYRRI 497


>gi|328675789|gb|AEB28464.1| conserved membrane protein of unknown function [Francisella cf.
           novicida 3523]
          Length = 283

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 90/288 (31%), Gaps = 7/288 (2%)

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTI 129
            +     L+ +  N+E++++ + G S   + K V+ + I+ SI   +    I P  +  +
Sbjct: 1   MVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVVLVGIIGSITTIVFGGYIAPILQRQV 60

Query: 130 KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYA 189
                       +    +      + +     +       +Q   + + R  ++      
Sbjct: 61  DTNMVTYNTHDLWFKTPDGFMNIANIEPTKGKAYGIRKFMVQDNKVREIRYAESATYIND 120

Query: 190 QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSF 249
            S ++    + I          +   K I I+   +  + +     S   +   + N   
Sbjct: 121 ASANVFNISKIIF-------PSNDGQKHIDIVTNMTNAVWSNPIPISVAKVITINDNDYL 173

Query: 250 LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIF 309
             +   +      +  ++   +F + + Q L  +I  L+S+  +              + 
Sbjct: 174 NFSQLTSYMLSNSQAKDSISLKFWQEVFQPLALMILILLSVPLSIGSTRSSTLILKLLLG 233

Query: 310 ISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                +F +       I  I   P  +      +  +  +  L IK K
Sbjct: 234 AFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSK 281


>gi|255324255|ref|ZP_05365377.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
           SK141]
 gi|255298771|gb|EET78066.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
           SK141]
          Length = 247

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 7/86 (8%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L+  +   I  L++ +        ++      ++ + S+ FG     ++++     +   
Sbjct: 94  LSAAISLAIIVLLAFLLRSLANRSKRAGTSRRVWFAFSLYFGFRILLTFMVTPAGADVPD 153

Query: 336 IPILY-----LFLFCISSIFLLMIKK 356
                     + +   + + L+   +
Sbjct: 154 WLFAADGMVQILVGVAAVLGLIFSVR 179


>gi|315453577|ref|YP_004073847.1| putative integral membrane protein [Helicobacter felis ATCC 49179]
 gi|315132629|emb|CBY83257.1| putative integral membrane protein,Permease YjgP/YjgQ [Helicobacter
           felis ATCC 49179]
          Length = 355

 Score = 41.5 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/360 (10%), Positives = 88/360 (24%), Gaps = 14/360 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++     +   +  + +      I  LQ  +    +   L +     G      L 
Sbjct: 2   RLWFFVGSYYLKYCFVILMALELFFIGIDSLQYADKFPDAANLLLLFFVYDGL---YALN 58

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +       +  R+ +   +   G S   ++ P+L + +   I          
Sbjct: 59  YTLPISLLLGLVLFYITFIRSNQYSALLAIGYSIRQILNPMLTINLFFIIIFVGLNATPF 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
              +     +  K         L            Y+   K NP         + +    
Sbjct: 119 VYMQDKAMAIIYKDNAGNVSENLLVKYNND-----YVYFGKINPLLQNAQNIKIFTLKND 173

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                     +   D+   +         +P+      +  ++  L          VL  
Sbjct: 174 ELSAVAQADHAAFKDKYWTLHQATIATLPTPLGLGDQGLLVENAPLLKTLKGFHPKVLDT 233

Query: 243 NDQN----LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             QN           + +    +    +  R   +  +    F  +  ++  +A     L
Sbjct: 234 IYQNKPAVSITDAFRSLHVLYRQHGDTKKIRGFLYVAILTPFFVPLTAIL--IARYTPNL 291

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R           + ++  ++  F  +        +Y     +  F I     L   +K 
Sbjct: 292 ARYENLALLSLKFIILALILWGLFFALGKFSIAGLFYPEFGIVIPFAILCGITLHHYRKL 351


>gi|330470505|ref|YP_004408248.1| hypothetical protein VAB18032_02820 [Verrucosispora maris
           AB-18-032]
 gi|328813476|gb|AEB47648.1| hypothetical protein VAB18032_02820 [Verrucosispora maris
           AB-18-032]
          Length = 646

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 29/82 (35%)

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
           +   I G I ++      L R    +     +++I       + + +  I   P     L
Sbjct: 416 IAAPILGTIGLLRPASAGLRRLGNAVVAALFNIAIFGTGAAIYLFAVDLIMSTPTLPGWL 475

Query: 340 YLFLFCISSIFLLMIKKKYTKI 361
            + L  +  +   ++ + Y +I
Sbjct: 476 QVVLVWLCGVVGWLLLRPYRRI 497


>gi|152990135|ref|YP_001355857.1| hypothetical protein NIS_0386 [Nitratiruptor sp. SB155-2]
 gi|151421996|dbj|BAF69500.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 343

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 97/355 (27%), Gaps = 15/355 (4%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
             Y+     + FL+  + +         L    +  S   S N+ +    Y     + ++
Sbjct: 3   YRYLAINYLKYFLLLLISLTLFFV---SLDYFQVFKSLPASANLQILYLYYKSLNAIDLL 59

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P         +   + R+ EL+ I   G S+  ++ PV   ++LL+I            
Sbjct: 60  FPITLIFALIALKNRLIRSNELVAIYALGYSKRGVVMPVFLTSLLLTILYLFLHLTSFAY 119

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTH 184
                  +     L+     L                 +       +   I         
Sbjct: 120 ADEYANNIKKYQSLSSATKDLFFKYNNDYVFF------EKLYPLNKRAQGIKVYELENQK 173

Query: 185 KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
                 + S    +++  L+D  +   S               LQ         V +   
Sbjct: 174 LQKIIFAQSATFQKRSWHLSDATIVEVSDGKLIERKA--DLSILQNYKPKILDSVYEGKS 231

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
                           +   ++  ++    +L    F     +I        A   +   
Sbjct: 232 SITLIDALEAIKLLKQQSLNVDRIKAIIFYQLLFPFFAPFLMIIIYYFVPVTA---RITN 288

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-FLFCISSIFLLMIKKKY 358
           ++      +++  + WGF + + K+  N        + F   +  +  L + KK+
Sbjct: 289 LNLFLFGATVTSLIVWGFLFTLVKLAFNGSLDAWYAIVFPISLLLVIALYLYKKF 343


>gi|311740970|ref|ZP_07714795.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311303772|gb|EFQ79850.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 221

 Score = 41.1 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 7/86 (8%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L+  +   I  L++ +        ++      ++ + S+ FG     ++++     +   
Sbjct: 65  LSAAISLAIIVLLAFLLRSLANRSKRAGTSRRVWFAFSLYFGFRILLTFMVTPAGADVPD 124

Query: 336 IPILY-----LFLFCISSIFLLMIKK 356
                     + +   + + L+   +
Sbjct: 125 WLFAADGMVQILVGVAAVLGLIFSVR 150


>gi|257462586|ref|ZP_05626996.1| hypothetical protein FuD12_01959 [Fusobacterium sp. D12]
          Length = 93

 Score = 41.1 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 37/91 (40%)

Query: 1  MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
          MK    YIL+      ++S     FI  +  I+  +  +     S+  + +I  + +P +
Sbjct: 3  MKIINSYILKESRGPIVLSVSIFTFIFLLDIIVTMMESIIVKGISVFDVARILSFYVPPI 62

Query: 61 LPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
          L    P    +      +   R++E + +++
Sbjct: 63 LTQTLPLGLFVGIMITFSKFTRSSEAIAMNS 93


>gi|145540345|ref|XP_001455862.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423671|emb|CAK88465.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1270

 Score = 41.1 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/336 (9%), Positives = 79/336 (23%), Gaps = 15/336 (4%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
             +        +   +F + I      +Q +              K+   + P    ++ 
Sbjct: 101 RLLFFLTILMAIAEFVFFILIILSSDYIQGLYQSEKIGNDYQKFDKVVSVMKP----IIL 156

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
            F   +      T  N     +    +  +   L              L   +       
Sbjct: 157 IFSILIVVGLTYTIHNFYQMTISSITSRFNIYLLCIAASLTCWGSVYLLKGMDIYPISAI 216

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT--QT 183
            + I        +      ++  L       + I              F           
Sbjct: 217 LNLIILGLIVFAIISNTWKIKGLLMILAALQILIIPVLLGFQAQYIRDFQEQQESNIANC 276

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY-TLQTESANSSTIVLKA 242
            +     S S             ++  ++  + +     + +      +           
Sbjct: 277 QQQMNNLSESYLSQHSCASKYIKDIQTQNCPNGEKECSVYSTTCDRDAQVQRWEEQTTDP 336

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
            D  L  L      N N    +   Y  +    +   L   +F L +++   +  L R+ 
Sbjct: 337 ADHPLGCL------NLNCCKTVSNIYTKDLLILIMLSLATPLF-LFALIL-FEFHLSRRT 388

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
           +    +  ++   F + +  + +   +     Y PI
Sbjct: 389 RSDKTLGRNIETLFLLLFIGTIVFGILLLVNNYTPI 424


>gi|169837524|ref|ZP_02870712.1| Hypothetical membrane-spanning protein [candidate division TM7
           single-cell isolate TM7a]
          Length = 125

 Score = 40.8 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 36/116 (31%), Gaps = 4/116 (3%)

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           KA +  +  L            + L   R EF+ R++  L   +  LI +      +   
Sbjct: 10  KAKNLTMPELREKTVYFTRVGADSLN-LRIEFYYRISFALSSFVMCLIGLSL---GSRYV 65

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +      I +S+ I +  +   + +          I         +  +  + + +
Sbjct: 66  RGGAALNIGLSVIIGYAYYGISTILRSMAVAGTVPIYAACFIPLIVFFVVGIKLFR 121


>gi|314936707|ref|ZP_07844054.1| probable membrane protein [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655326|gb|EFS19071.1| probable membrane protein [Staphylococcus hominis subsp. hominis
           C80]
          Length = 372

 Score = 40.8 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/261 (9%), Positives = 76/261 (29%), Gaps = 12/261 (4%)

Query: 9   LRCIGRSFLMSCLF--IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           +  I   F++  L   +  I+  I+IL  I  + +S  +L ++L          + ++ P
Sbjct: 85  IWAIIVYFIICLLISFLALISMNIRILSGILFLIASIITLPLVLLF--------ITLIIP 136

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F +    +    ++   +    +T        +   +             N  E    
Sbjct: 137 IFFFITAIMMFARRSKIETVPAYGSTYDYPPYYNQRDDYDDRYYYEEEPTQYNDEEEYIE 196

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
              K   ++ ++    S   +      D + Y  I++ N           D  +    + 
Sbjct: 197 PPRKTKKSERRIRRKPS--SDYNEREHDYEDYHHITQNNDEQDFNDDIEEDKYNQYPKRA 254

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             ++      D  + +L+    ++    +   + +      ++ +             + 
Sbjct: 255 ITSEYQQSSNDDTSGVLSRQRKYKYKSKNSMPNEVNDDENNVEKDLYIDKKEQKAQRKRE 314

Query: 247 LSFLLNPNPNNPNYRPELLET 267
            + L            + ++ 
Sbjct: 315 KAELRAKKKEKRKAYNQRMKE 335


>gi|332086637|gb|EGI91777.1| hypothetical protein SB521682_3571 [Shigella boydii 5216-82]
          Length = 109

 Score = 40.8 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 44/106 (41%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL 106
           L M+ P    +     L  M   +E+  I   G  R    KP    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTYSEITAISAAGAVRDACTKPFFIW 106


>gi|319951499|ref|ZP_08025305.1| apolipoprotein N-acyltransferase [Dietzia cinnamea P4]
 gi|319434849|gb|EFV90163.1| apolipoprotein N-acyltransferase [Dietzia cinnamea P4]
          Length = 552

 Score = 40.8 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 3/77 (3%)

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF---WGFSYIIHKIEQNPYY 335
           W   +   L+ +V         + +    + +   + F +    W   Y+          
Sbjct: 28  WTAVLAIALLVVVLVPSGDRPPRARTGALLGLVSGLVFFLLLVPWVGMYVGAYASWGLSL 87

Query: 336 IPILYLFLFCISSIFLL 352
           +  LYL  F   ++ +L
Sbjct: 88  VEALYLAAFGAGAVVIL 104


>gi|332708721|ref|ZP_08428693.1| putative permease [Lyngbya majuscula 3L]
 gi|332352575|gb|EGJ32143.1| putative permease [Lyngbya majuscula 3L]
          Length = 116

 Score = 40.8 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
             + L   +    +++      +IFGL+    + +    ++  K     + L + FG ++
Sbjct: 18  DRKKLRMLQVRMQQKIAFPFICIIFGLVGASISIRP---KRISKGTSFGVCLIVIFG-YY 73

Query: 321 GFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIKK 356
             S++I          PI+  +L           ++ +
Sbjct: 74  LLSFVIGGFGIAGILSPIVAAWLPNLFGFGAGGWLLWR 111


>gi|119953584|ref|YP_945794.1| hypothetical membrane spanning protein [Borrelia turicatae 91E135]
 gi|119862355|gb|AAX18123.1| hypothetical membrane spanning protein [Borrelia turicatae 91E135]
          Length = 429

 Score = 40.8 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 77/197 (39%), Gaps = 1/197 (0%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y +P ++ +  P
Sbjct: 11  YIIIEFFKYFLITFLFFFFVFFINQILFFMRILLQNYVPFLKAFIFVIYSLPMIIALSPP 70

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
           F   +     +     N E+L   + G S   L+ P   L +++++  FI+ + + P   
Sbjct: 71  FAALLSVILTIYRFKLNNEILAFRSIGISIFNLLVPFFKLGVVIALISFITNDFLLPLGS 130

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
               ++  + +  +    L+     +   DL     + +        F  ++R     +I
Sbjct: 131 IGRLKIFNEIKEEIPHLILKPYSSKQYG-DLIFVSGEKSETGYKNVTFFDNTRLKGYDRI 189

Query: 187 YYAQSGSIDLDRQAIIL 203
             A+  +I  +   +  
Sbjct: 190 LMARELNIQKENYQVYF 206


>gi|289803331|ref|ZP_06533960.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 258

 Score = 40.8 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 94/258 (36%), Gaps = 5/258 (1%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +R   +S L     ++ I +  ++++ +          N++L + G  +P +  ++ P  
Sbjct: 1   MRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLS 60

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     P     
Sbjct: 61  LFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAGPWSSKH 120

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKI 186
             ++ A+A+     + L +  F +  +   +   +    +    +F+   R        +
Sbjct: 121 QDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPKGNARPSV 180

Query: 187 YYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
             A SG    +    Q + LN G     + + +D  I  F++Y         +      +
Sbjct: 181 VVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTD 240

Query: 244 DQNLSFLLNPNPNNPNYR 261
             ++  L N + +     
Sbjct: 241 QMDMRTLWNTDNDRARAE 258


>gi|329943109|ref|ZP_08291883.1| hypothetical protein G5Q_0788 [Chlamydophila psittaci Cal10]
 gi|332287691|ref|YP_004422592.1| conserved hypothetical membrane transport protein [Chlamydophila
           psittaci 6BC]
 gi|313848265|emb|CBY17266.1| conserved hypothetical membrane protein [Chlamydophila psittaci
           RD1]
 gi|325506677|gb|ADZ18315.1| conserved hypothetical membrane transport protein [Chlamydophila
           psittaci 6BC]
 gi|328814656|gb|EGF84646.1| hypothetical protein G5Q_0788 [Chlamydophila psittaci Cal10]
 gi|328914944|gb|AEB55777.1| YjgP/YjgQ family protein [Chlamydophila psittaci 6BC]
          Length = 367

 Score = 40.8 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 118/365 (32%), Gaps = 10/365 (2%)

Query: 1   MKSFELYILRCIGRSFL-MSCLFIVFIAWVIQILQRIN---LVSSSTESLNILLKISGYL 56
           M  ++ Y+L     S + +  L  VF A +   L  I       +S  SL + +      
Sbjct: 1   MYIWKRYVLTKFWFSLVSLIVLAFVFYASIHHSLHTIKGNTTSLASGASLKLSILYYLSQ 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           I      + P   A+ TT  L SM    E+L++  +G S  +L  P++  + ++++ L+ 
Sbjct: 61  IALKAEFLIPQLVAVATTITLFSMQNKREVLLLQASGLSLKSLTAPLIHSSFIITLLLYA 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           +   + P C           +  L   + +    +  D  + +  S      TL  +F +
Sbjct: 121 NFQWLHPICEQISITKEHMDRGTLDKVHDKVPALYLKDQTVLLYSSIEQKTLTLNQVFWI 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +  T       A +         +I           +S+   + +F            S
Sbjct: 181 KNPKTIYTMEKLAFTTPSLPIGLDVIRFSETESGSIELSEYSDMKEFPEIEFGFYDNPFS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRP------ELLETYRSEFHKRLTQWLFPVIFGLISI 290
            I        LS      P N           + + +  S F+  L   L  +   +IS 
Sbjct: 241 KIFTAGGKNRLSESFQAIPWNATGLGLSTTIPQRILSLLSTFYYMLISPLACISSMIISA 300

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
               + + V      + + +    +F +F     ++      P    +L+  +       
Sbjct: 301 YLCLRFSRVPTVTLAYLVPLGTINTFFIFLKAGMVLSNSSVLPILPVMLFPLIILAIFTN 360

Query: 351 LLMIK 355
               K
Sbjct: 361 YAYAK 365


>gi|251798754|ref|YP_003013485.1| membrane protein-like protein [Paenibacillus sp. JDR-2]
 gi|247546380|gb|ACT03399.1| membrane protein-like protein [Paenibacillus sp. JDR-2]
          Length = 369

 Score = 40.4 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/79 (11%), Positives = 20/79 (25%), Gaps = 6/79 (7%)

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
           PV+   I +                 + I L   F       +     +       I Y 
Sbjct: 45  PVVLLWIGLHGLLAGRQGHGSGWWAGMMIILGFLFLGHNLEWFAWSFGDI------ISYA 98

Query: 342 FLFCISSIFLLMIKKKYTK 360
           +   I  +    +++   +
Sbjct: 99  WPIIIILVGFNFLRRPRHR 117


>gi|145596809|ref|YP_001161106.1| hypothetical protein Strop_4300 [Salinispora tropica CNB-440]
 gi|145306146|gb|ABP56728.1| hypothetical protein Strop_4300 [Salinispora tropica CNB-440]
          Length = 644

 Score = 40.4 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 29/82 (35%)

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
           +   I G I ++      L R    +     +++I       + + +  I   P     L
Sbjct: 416 IAAPILGTIGLLRPASAGLRRLGNAVVAAIFNIAIFGTGAAIYLFAVDLIMSTPTLPGWL 475

Query: 340 YLFLFCISSIFLLMIKKKYTKI 361
            + L  +  +   ++ + Y ++
Sbjct: 476 QVVLVWLCGVVGWLLLRPYRRV 497


>gi|111025470|ref|YP_707890.1| hypothetical protein RHA1_ro08688 [Rhodococcus jostii RHA1]
 gi|110824449|gb|ABG99732.1| hypothetical protein RHA1_ro08688 [Rhodococcus jostii RHA1]
          Length = 705

 Score = 40.4 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 11/87 (12%), Positives = 30/87 (34%), Gaps = 1/87 (1%)

Query: 275 RLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           RL     P+   L +  A     + R     +   ++ S+   ++   + +   +  N  
Sbjct: 391 RLAILFAPIWIPLAAAHAGTLMRVCRMIASAYMWGVAGSVIVALYL-LALVKLYVTDNGQ 449

Query: 335 YIPILYLFLFCISSIFLLMIKKKYTKI 361
                 L+   I ++    I + + ++
Sbjct: 450 IDGSWRLWFMVILTLVCWFIMRPFKRV 476


>gi|228474300|ref|ZP_04059035.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|228271659|gb|EEK13006.1| conserved hypothetical protein [Staphylococcus hominis SK119]
          Length = 372

 Score = 40.0 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 27/261 (10%), Positives = 77/261 (29%), Gaps = 12/261 (4%)

Query: 9   LRCIGRSFLMSCLF--IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           +  I   F++  L   +  I+  I+IL  I  + +S  +L ++L          + ++ P
Sbjct: 85  IWAIIVYFIICLLISFLALISMNIRILSGILFLIASIITLPLVLLF--------ITLIIP 136

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F +    +    ++   +    +T        +   +             N  E    
Sbjct: 137 IFFFITAIMMFARRSKIETVPAYGSTYDYPPYYNQRDDYDDRYYYEEEPTQYNDEEEYIE 196

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S  K   ++ ++    S   +      D + Y  I++ N           D  +    + 
Sbjct: 197 SPRKTKKSERRIRRKPS--SDYNEREHDYEDYHHITQNNDEQDFNDDIEEDKYNQYPKRA 254

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             ++      D  + +L+    ++    +   + +      ++ +             + 
Sbjct: 255 VKSEYQQSSNDDTSGVLSRQRKYKYKSKNSMPNEVNDDENNVEKDLYIDKKEQKAQRKRE 314

Query: 247 LSFLLNPNPNNPNYRPELLET 267
            + L            + ++ 
Sbjct: 315 KAELRAKKKEKRKAYNQRMKE 335


>gi|301162324|emb|CBW21869.1| putative anti-sigma factor [Bacteroides fragilis 638R]
          Length = 340

 Score = 40.0 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 20/86 (23%)

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
                          +   + +N   +L     +     + +   R    KR    L   
Sbjct: 41  DQLYYMLFVGERKVAMDGVDTENSLSVLKDRIKHKESEKKSVHRIRVSKWKRYAMPLAAF 100

Query: 284 IFGLISIVAADKRALVRQRKKIHPIF 309
           + GL+  V A       +        
Sbjct: 101 LCGLLVSVGALYWISSGKSAGYIFAT 126


>gi|253563357|ref|ZP_04840814.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251947133|gb|EES87415.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 336

 Score = 40.0 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 20/86 (23%)

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
                          +   + +N   +L     +     + +   R    KR    L   
Sbjct: 37  DQLYYMLFVGERKVAMDGVDTENSLSVLKDRIKHKESEKKSVHRIRVSKWKRYAMPLAAF 96

Query: 284 IFGLISIVAADKRALVRQRKKIHPIF 309
           + GL+  V A       +        
Sbjct: 97  LCGLLVSVGALYWISSGKSAGYIFAT 122


>gi|53712616|ref|YP_098608.1| putative anti-sigma factor [Bacteroides fragilis YCH46]
 gi|265762757|ref|ZP_06091325.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52215481|dbj|BAD48074.1| putative anti-sigma factor [Bacteroides fragilis YCH46]
 gi|263255365|gb|EEZ26711.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 336

 Score = 40.0 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 20/86 (23%)

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
                          +   + +N   +L     +     + +   R    KR    L   
Sbjct: 37  DQLYYMLFVGERKVAMDGVDTENSLSVLKDRIKHKESEKKSVHRIRVSKWKRYAMPLAAF 96

Query: 284 IFGLISIVAADKRALVRQRKKIHPIF 309
           + GL+  V A       +        
Sbjct: 97  LCGLLVSVGALYWISSGKSAGYIFAT 122


>gi|62185347|ref|YP_220132.1| hypothetical protein CAB734 [Chlamydophila abortus S26/3]
 gi|62148414|emb|CAH64181.1| conserved hypothetical membrane protein [Chlamydophila abortus
           S26/3]
          Length = 367

 Score = 40.0 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 116/365 (31%), Gaps = 10/365 (2%)

Query: 1   MKSFELYILRCIGRSFL-MSCLFIVFIAWVIQILQRIN---LVSSSTESLNILLKISGYL 56
           M  ++ Y+L     S + +  L  VF A +   L  I       +S  SL + +      
Sbjct: 1   MYIWKRYVLTKFWFSLVSLIVLAFVFYASIHHSLHTIKGNTTSLASGASLKLSILYYLAQ 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           I      + P   A+ TT  L SM    E+L++  +G S  +L  P++  + ++++ L+ 
Sbjct: 61  IALKAEFLIPQLVAVATTITLFSMQNKREVLLLQASGLSLKSLTAPLIHSSFIITLLLYA 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           +   + P C           +  L     +    +  D  + +  S      TL  +F +
Sbjct: 121 NFQWLHPICEQISTTKEHIDRGTLDKVQDKVPALYLKDQTVLLYSSIEQKTLTLNQVFWI 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +  T       A +         +I           +S+   + +F            S
Sbjct: 181 KNPKTIYTMEKLAFTTPSLPIGLDVIRFSATESGSMELSEYSDMKEFPEIEFGFYDNPFS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRP------ELLETYRSEFHKRLTQWLFPVIFGLISI 290
            I        LS      P N           + + +  S F+  L   L  +   +IS 
Sbjct: 241 KIFTAGGKNRLSESFQAIPWNATGLGLSTTIPQRILSLLSTFYYMLISPLACISSMIISA 300

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
               + + V      + + +    +F +F     ++      P    + +  +       
Sbjct: 301 YLCLRFSRVPTVTLAYLVPLGTINTFFIFLKAGMVLANSSVLPILPVMFFPLIILAIITN 360

Query: 351 LLMIK 355
               K
Sbjct: 361 YAYAK 365


>gi|149193964|ref|ZP_01871062.1| hypothetical protein CMTB2_02728 [Caminibacter mediatlanticus TB-2]
 gi|149135917|gb|EDM24395.1| hypothetical protein CMTB2_02728 [Caminibacter mediatlanticus TB-2]
          Length = 323

 Score = 39.6 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 69/174 (39%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+   +YIL      FL     I  I  +I I+   N+ S    +   LLK     +P +
Sbjct: 1   MRKISVYILNQFLPLFLTIFFVISAIISLIYIITISNITSKIQITFIELLKFYILSMPQI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +     F +   N+ + ++   EL+ + + G    TL+ P+L LAILL+        I
Sbjct: 61  LLITLAISFFISAINLYSKLSETQELIALFSLGFKPKTLLNPILLLAILLTFINLFILFI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
             P  +     L  + +    F++    +  +  D +       N + T   ++
Sbjct: 121 SIPYAKMNFNNLKNEKKQEAKFNFQSSQVSQQFGDWVIFANKGKNNSFTKIYLY 174


>gi|302342654|ref|YP_003807183.1| hypothetical protein Deba_1221 [Desulfarculus baarsii DSM 2075]
 gi|301639267|gb|ADK84589.1| protein of unknown function DUF107 [Desulfarculus baarsii DSM 2075]
          Length = 441

 Score = 39.6 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 9/77 (11%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 278 QWLFPVIFGLISIVAADKRALVR-QRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYY 335
             +  +   LI++        ++     +  +  +L + FG    F +    +E +    
Sbjct: 290 LPVSSLGLALIALAVVLFIVEIKVTSFGLLSLAGALCLVFGSLMLFDFEGDFVELSLGVM 349

Query: 336 IPILYLFLFCISSIFLL 352
            P++   +   + +  L
Sbjct: 350 TPVVAAVIAFFAGVAYL 366


>gi|156744090|ref|YP_001434219.1| acriflavin resistance protein [Roseiflexus castenholzii DSM 13941]
 gi|156235418|gb|ABU60201.1| acriflavin resistance protein [Roseiflexus castenholzii DSM 13941]
          Length = 1171

 Score = 39.6 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 6/136 (4%)

Query: 221 MKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL-TQW 279
           +  +S T+   +     +            LN      N +   L   +SE  +RL  + 
Sbjct: 854 IPTRSGTVPLSALGRIELASTPQTIRRYDKLNQVIIGANLQGRNLGEVQSELQQRLEAKG 913

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
           + P      +++A+    + +Q +    + +++ +S    +            P  I + 
Sbjct: 914 IIPP-----TVIASFTGLVQQQTEGFESLLLAMLLSVIFVYMVLASQFGSFTQPLVIMVA 968

Query: 340 YLFLFCISSIFLLMIK 355
             F F  + + L +I 
Sbjct: 969 MPFSFIGAFLALRLIN 984


>gi|219684946|ref|ZP_03539887.1| conserved hypothetical integral membrane protein [Borrelia garinii
           PBr]
 gi|219671684|gb|EED28740.1| conserved hypothetical integral membrane protein [Borrelia garinii
           PBr]
          Length = 429

 Score = 39.6 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 81/207 (39%), Gaps = 5/207 (2%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK      E YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y 
Sbjct: 1   MKILKNSYESYIITEFFKYFLITFLFFFFVFFINQILFFMRILLQNYVPFLKAFIFIIYS 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P V+ +  PF   +     +     N E+L   + G S   LI P   L +++    FI
Sbjct: 61  LPMVIALSPPFASLISVILTIHKFKINNEILAFRSIGISIFDLIFPFFKLGVVIVFISFI 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           S +I+ P       ++  + +  +    L+     +   DL     + + N      F  
Sbjct: 121 SNDILLPLGSIGRLKIFNEIKEEVPHLVLKPYSSKQYG-DLIFVSGEKSENGYKNVTFFD 179

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIIL 203
           ++R     +I+ A++  I  +   +  
Sbjct: 180 NTRLKGFDRIFMAKNLDIRKENFQVYF 206



 Score = 36.9 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 1/108 (0%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           LN  P       + L  +  EF+++++  L  + F  ++                  I I
Sbjct: 321 LNFKPYQDKSMKQNLALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISI 380

Query: 311 SLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            + + +  +F G      +   NP  + IL   +  I+   L +   K
Sbjct: 381 IICVFYWVMFIGGKVYTVQYAPNPIIVTILPNLILIIAGAILFLRLLK 428


>gi|187918661|ref|YP_001884227.1| hypothetical membrane spanning protein [Borrelia hermsii DAH]
 gi|119861509|gb|AAX17304.1| hypothetical membrane spanning protein [Borrelia hermsii DAH]
          Length = 429

 Score = 39.6 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 1/197 (0%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y +P V+ +  P
Sbjct: 11  YIITEFCKYFLITFLFFFFVFFINQILFFMRILLQNYVPFFKAFIFVIYSLPMVIALSPP 70

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
           F   +     +     N E+L   + G S   L+ P   L +++++  FI  + + P   
Sbjct: 71  FAALLSVILTIYRFKLNNEILAFRSIGISIFDLLVPFFKLGVVIALIAFILNDFLLPLGS 130

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
               ++  + +  +    L+     +   DL     + +        F  ++R     +I
Sbjct: 131 IGRLKIFNEIKEEIPHLILKPYSSKQYG-DLIFVSGEKSDTGYRNVTFFDNTRLKGYDRI 189

Query: 187 YYAQSGSIDLDRQAIIL 203
           + A+  +I  +   +  
Sbjct: 190 FMARELNIQKENYQVYF 206



 Score = 36.9 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 36/110 (32%), Gaps = 2/110 (1%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           LN +P            +  EF+++++  L  + F  ++          ++   I  + I
Sbjct: 321 LNYSPYEDLLAKRSYALFYLEFYQKISLPLSVLFFIFLA--FGMGMYSNKKYSIILELVI 378

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           S+ I    +  F        Q      ++ +          L++  +  K
Sbjct: 379 SILICVFYWVMFIGGKVYTVQYAPNPFLVTVLPNVALIFAGLILFLRLLK 428


>gi|134097017|ref|YP_001102678.1| putative integral membrane protein [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291006237|ref|ZP_06564210.1| putative integral membrane protein [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133909640|emb|CAL99752.1| putative integral membrane protein [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 568

 Score = 39.6 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 2/86 (2%)

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
            +  LF      I I  A +    R R          ++     W  S ++  +E    Y
Sbjct: 211 FSHPLFT-AMVGIGIGLASRTTNGRMRVLWPVFGFLAAVVLHAVWNASTLLGGVEFLNIY 269

Query: 336 IPILYLFLFCISSIFLLMIKKKYTKI 361
              + + +F  +   +L  +K+  +I
Sbjct: 270 FLFM-VPIFFGTGWIVLWQRKREQRI 294


>gi|217322881|ref|YP_002327179.1| hypothetical protein ABBFA_003303 [Acinetobacter baumannii
          AB307-0294]
 gi|213986513|gb|ACJ56812.1| hypothetical protein ABBFA_003303 [Acinetobacter baumannii
          AB307-0294]
          Length = 71

 Score = 39.6 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 30/69 (43%)

Query: 3  SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              Y+++ +  + L+    +  I    ++++   + +      +IL  I GY +P  L 
Sbjct: 2  IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLT 61

Query: 63 MVTPFCFAM 71
          ++ P  F +
Sbjct: 62 LILPLGFLL 70


>gi|51599059|ref|YP_073247.1| hypothetical protein BG0833 [Borrelia garinii PBi]
 gi|51573630|gb|AAU07655.1| conserved hypothetical integral membrane protein [Borrelia garinii
           PBi]
          Length = 429

 Score = 39.2 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 81/207 (39%), Gaps = 5/207 (2%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK      E YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y 
Sbjct: 1   MKILKNSYESYIISEFFKYFLITFLFFFFVFFINQILFFMRILLQNYVPFLKAFIFIIYS 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P V+ +  PF   +     +     N E+L   + G S   LI P   L I++    FI
Sbjct: 61  LPMVIALSPPFASLISVILTIHKFKINNEILAFRSIGISIFDLIFPFFKLGIVIVFISFI 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           S +I+ P       ++  + +  +    L+     +   DL     + + N      F  
Sbjct: 121 SNDILLPLGSIGRLKIFNEIKEEVPHLVLKPYSSKQYG-DLIFVSGEKSENGYKNVTFFD 179

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIIL 203
           ++R     +I+ A++  I  +   +  
Sbjct: 180 NTRLKGFDRIFMAKNLDIKKENFQVYF 206



 Score = 36.5 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 1/108 (0%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           LN  P       + L  +  EF+++++  L  + F  ++                  I I
Sbjct: 321 LNFKPYQDKSMNQNLALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISI 380

Query: 311 SLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            + + +  +F G      +   NP  I IL   +  I+   L +   K
Sbjct: 381 IICVFYWVMFIGGKVYTVQYAPNPIIITILPNLILIIAGAILFLRLLK 428


>gi|195952581|ref|YP_002120871.1| permease-like [Hydrogenobaculum sp. Y04AAS1]
 gi|195932193|gb|ACG56893.1| permease-like [Hydrogenobaculum sp. Y04AAS1]
          Length = 353

 Score = 39.2 bits (89), Expect = 0.92,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 103/347 (29%), Gaps = 9/347 (2%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              +I +    +  +  L I+ + ++ QI      ++   +S  IL +     +P VL  
Sbjct: 2   LLRFITKRFLFTIFLVYLSILALFFIYQISNFF--ITYHMKSPKILFQTILNFLPIVLFY 59

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
                 ++    +   + R    L+  + G     + KP + +++L+S    +      P
Sbjct: 60  TATINVSISVFVLSHYLKRIKMFLVPQSFGIPISHIFKPFIIVSLLISFGNLMLNEFFIP 119

Query: 124 KCRS--TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
                    +   K                +  ++    I      +      I      
Sbjct: 120 NATKELKYIEHVYKKNQKYELGIARNLWIAKEKNNEKTFIGTSLATSNGLFYNIKIINVK 179

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                Y  ++    +    + L  G     SP        +      +    + +  +  
Sbjct: 180 NNKFNYIIKAKKAIVKNGYMDLEQGIETSFSP--FREIHFQTLHLKTEINPKDLNLWIKT 237

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            ++Q+L+ L+             +  Y S F  +L     P +   I+     K      
Sbjct: 238 PDEQSLTELV-KTAIVMRKEGLNMFPYISTFIFKLEFSFLPFLMVCIASFYIAKSQNTID 296

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
             K      SL     V      +  KI  NP +  ++Y+F+   + 
Sbjct: 297 WYKAFLWHASLFGIGIV--IPYSLSSKINMNPLFFVVIYVFMSFYAL 341


>gi|301119303|ref|XP_002907379.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262105891|gb|EEY63943.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 822

 Score = 39.2 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 33/331 (9%), Positives = 73/331 (22%), Gaps = 15/331 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVF-IAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           K     I   +     +S +      +  ++ L   NL +S             +L    
Sbjct: 107 KIVNR-IFEEVMILGFLSMVIFTLNTSGALKSLALNNLTASEQLHFYEFFHYIVFLTMIY 165

Query: 61  LPMVTPFCFAMETTNVLTSMNR----NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
             ++      + T             +     I +          P    +         
Sbjct: 166 FIVIVLLLLFIGTVVPKLVWEIKNQPDQSRESISDIHDDTYDPQYPSFISSDRDDCGGSR 225

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
                  +  S++ +         +F    E       DD YI +     ++   G    
Sbjct: 226 RMRHSFIRDASSLARDLNPYSSGSSFMDDGERTLDTPSDDYYIAMRAQLRSDADVGNRTT 285

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +R      +                  +G     +   +      F+          S 
Sbjct: 286 TTRARAPSGMDLVMGSRAYSLLLQRYQREGWCFHFNIRRQWSLWKSFEILAYNICQNRSG 345

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRS------EFHKRLTQWLFPVIFGLISI 290
            I     +    F + P   +          Y         +H         +I  +I +
Sbjct: 346 YIYKNPAEMERLFGVRPT-QDEQENRMTYAKYHVLCMRNLLYHMTNIHPSGFLILLVICL 404

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWG 321
           + +              +  SL +   V + 
Sbjct: 405 LPSIFPDQDH--WIFIGVGGSLLLVNVVIFL 433


>gi|89071066|ref|ZP_01158277.1| Predicted permease [Oceanicola granulosus HTCC2516]
 gi|89043397|gb|EAR49616.1| Predicted permease [Oceanicola granulosus HTCC2516]
          Length = 108

 Score = 39.2 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 2/95 (2%)

Query: 196 LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSF--LLNP 253
                +++ DG         + +   +F  +T        S    +  ++N+    LL  
Sbjct: 14  EGGPQLVMVDGLAQTLRGSDQRLYTTRFNDFTYDIGRLIVSEEPGRLRERNVWSGPLLQA 73

Query: 254 NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
           +              R+E H R+ + L   +  ++
Sbjct: 74  SSALQAQIERPAVALRAEVHDRMNKALLGFVGPVL 108


>gi|296004798|ref|XP_002808751.1| conserved Plasmodium membrane protein, unknown function [Plasmodium
           falciparum 3D7]
 gi|225632135|emb|CAX64024.1| conserved Plasmodium membrane protein, unknown function [Plasmodium
           falciparum 3D7]
          Length = 3559

 Score = 39.2 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/284 (9%), Positives = 58/284 (20%), Gaps = 20/284 (7%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
               ++    +   F  S L   FI   +  +  I  ++S+   ++ L     +    V+
Sbjct: 341 NIIHMFNFFDVFMIFSFSILAFFFIFICLNSISFI--ITSTILFVSSLCTYFLHKYSNVI 398

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++      +    +      N           S        +  A  L          +
Sbjct: 399 IVIFQTITLLANCIMSYIYFYNISKKGTLYEIKSDHISTNYNIKNAHTLQGNSQTGSTYL 458

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLE----------------ENLFFRLDDDLYIKISKYN 165
                  I        L L F  +                         +       K  
Sbjct: 459 YTYEDKIILFYMIFISLFLIFHLMYILFIFLSKENNFTKLFTERKVYYYNIYPYYEKKNV 518

Query: 166 PNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS 225
                +              I       + +D    I N   ++ K            + 
Sbjct: 519 KPKQHRTNNGDHFNQKDNELIIKYDKYVLCVDDDKRITNAYRIYSKQIDINIKKYTYNEL 578

Query: 226 YTLQTESANSSTIVLKANDQNLSF--LLNPNPNNPNYRPELLET 267
           +  +    ++                LL    N   Y  +    
Sbjct: 579 HMFKHILLSAVIKYKHTQKVYTKQELLLKRKANKQIYEQKYYNE 622


>gi|159898811|ref|YP_001545058.1| hypothetical protein Haur_2290 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159891850|gb|ABX04930.1| hypothetical protein Haur_2290 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 726

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/173 (9%), Positives = 35/173 (20%), Gaps = 8/173 (4%)

Query: 52  ISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLS 111
                +P  L    P                N        + TS I   +    L  +L 
Sbjct: 431 YVLLNVPRALNSAAPAS--------NIWHWENESWQSGVLSTTSSIKWHRSGQQLFTVLL 482

Query: 112 IFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ 171
                       +                 +              +       +  +  +
Sbjct: 483 PLQSNLPITGVVEFDGETLTQRLAINSLSPYEEQVFVHHNEFYLLIIAPWQWVDFLHIYK 542

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK 224
              I                 +   ++  +   DG+++R     + I I +F 
Sbjct: 543 WDGIYWQSLPTQSLAKIDHYFAAWNNQLYMANTDGQLYRFDQAMQPIQIAQFD 595


>gi|303327959|ref|ZP_07358398.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861785|gb|EFL84720.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
          Length = 811

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCIS 347
           +  +           K   IF + S+   V    F+YI + +    ++ P+  L LF   
Sbjct: 640 AAASGTPPKASFDFAKGAGIFAAFSVGISVVSAAFAYIANSVFSLGWWWPVALLILFACI 699

Query: 348 -----SIFLLMIKKK 357
                 +    ++++
Sbjct: 700 SGPSMLLAWFKLRRR 714


>gi|320451385|ref|YP_004203481.1| diguanylate cyclase/phosphodiesterase domain 1 [Thermus scotoductus
           SA-01]
 gi|320151554|gb|ADW22932.1| diguanylate cyclase/phosphodiesterase domain 1 [Thermus scotoductus
           SA-01]
          Length = 358

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 6/87 (6%)

Query: 275 RLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           R       + F L++I+                + ++  +  G           I  NP 
Sbjct: 59  RFLLPFLALGFSLLAIILWRFPRTS-----SWVLPLAHLLVVGYLLTTLAYQLLIRPNPM 113

Query: 335 -YIPILYLFLFCISSIFLLMIKKKYTK 360
              P  Y   F   S FL    ++  +
Sbjct: 114 GLSPAAYWVPFVYFSSFLFFQTRQAVR 140


>gi|159901328|ref|YP_001547575.1| hypothetical protein Haur_4817 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894367|gb|ABX07447.1| hypothetical protein Haur_4817 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 267

 Score = 38.8 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 33/114 (28%)

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
              L            + +  Y++         +   +  L+ ++A  KR  +     + 
Sbjct: 154 TESLFQVLSYADEPSSQDMNNYQAVIAILYGIPICAGLGMLMGMLAYFKRRNLWGVLNLI 213

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
              I+   S  +  G        E       +    +F   +    +I+KK  +
Sbjct: 214 IAIIAFGCSGIIVLGAVASNVTNEMGSGLWLMFLSSIFLFVTSIAFLIRKKQPR 267


>gi|149022257|gb|EDL79151.1| cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle),
           isoform CRA_a [Rattus norvegicus]
          Length = 438

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 60/207 (28%), Gaps = 5/207 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWV-IQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+   LY +  +    L+       + ++     +++ L  S   SL + L +   LIP+
Sbjct: 227 MQRLPLYFIVNVIIPCLLFSFLTSLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPS 286

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILL----SIFLF 115
               V      M  T V    +    +++I+    S  T I P     + +    +I  F
Sbjct: 287 TSSAVPLIGKYMLFTMVFVIASIIITVIVINTHHRSPSTHIMPEWVRKVFIDTIPNIMFF 346

Query: 116 ISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
            +        +             ++       + F      + ++             +
Sbjct: 347 STMKRPSRDKQEKRIFTEDIDISDISGKPGPPPMGFHSPLIKHPEVKSAIEGVKYIAETM 406

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAII 202
              +++           S      + I
Sbjct: 407 KSDQESNNGSDVLCWHTSTHKTEHSYI 433


>gi|46127869|ref|XP_388488.1| hypothetical protein FG08312.1 [Gibberella zeae PH-1]
          Length = 1517

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/195 (9%), Positives = 48/195 (24%), Gaps = 7/195 (3%)

Query: 4   FELYIL----RCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
             LY +    R  G  F    +  V +  +  I + I   S S     +   I    +  
Sbjct: 622 LTLYFMTNLKREPGAFFFFILMSFVVVLVMSMIFRTIASASRSLFQALVPAAILILDLVI 681

Query: 60  VLPMVTPFCFAMETT---NVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
               V P  + +        +  +    E ++++          + +    +     +  
Sbjct: 682 FTGFVIPKRYMLGWCKWLYYIDPIAYAFEAVVVNEFHNRDYECDQFIPNPGVTGYADVPS 741

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
              +         +      + A      +    +R    +   I  +          + 
Sbjct: 742 DSRVCSAVGAQPGRSAVNGDRYAEMQFGYKWENRWRNFGIVIAWIVLFTITYMTAAELVS 801

Query: 177 DSRDTQTHKIYYAQS 191
           + +      +Y    
Sbjct: 802 EKKSKGEVLVYRRGH 816


>gi|228931444|ref|ZP_04094369.1| hypothetical protein bthur0010_60840 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228828250|gb|EEM73960.1| hypothetical protein bthur0010_60840 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 832

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQ-RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           +   L   +  LI++V A      R   +    + + ++I F +   F            
Sbjct: 327 IIVALMSPVMLLIALVPAWTGTAKRFLSELFRTLLMKVAIGFLITLMFWVSSILFSATDK 386

Query: 335 YIPILYLFLFCISSIFLLMIKK 356
           Y  ++   L  +S + + + +K
Sbjct: 387 YGYLVVAALQVLSFLGVWLYRK 408


>gi|148658388|ref|YP_001278593.1| acriflavin resistance protein [Roseiflexus sp. RS-1]
 gi|148570498|gb|ABQ92643.1| acriflavin resistance protein [Roseiflexus sp. RS-1]
          Length = 1177

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 6/136 (4%)

Query: 221 MKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL-TQW 279
           +  +S  +   S  +  +            LN      N +   L   ++E  +RL  + 
Sbjct: 854 IPTRSGAVPLTSLGTIELASTPQTIRRYNKLNQVIIGANLQGRNLGEVQAELQQRLDAKG 913

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
           L P      ++ A       +Q +    + +++ +S    +            P  I + 
Sbjct: 914 LIPP-----TVFAEFTGLAQQQTEGFESLLLAMLLSVIFVYMVLASQFGSFTQPLVIMVA 968

Query: 340 YLFLFCISSIFLLMIK 355
             F F  + + L +I 
Sbjct: 969 MPFSFIGAFLALRLIN 984


>gi|301766260|ref|XP_002918550.1| PREDICTED: solute carrier organic anion transporter family member
           5A1-like isoform 2 [Ailuropoda melanoleuca]
          Length = 800

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 38/152 (25%), Gaps = 3/152 (1%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQ---ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
                FL+    + FI    Q   I+  +  V        + ++         +P    F
Sbjct: 594 NTLIPFLIFLFIVTFITACAQPSAIIVTLRSVEDEERPFALGMQFVLLRTLAYIPTPIYF 653

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              ++TT +L       +    +   TS   +   +      +                 
Sbjct: 654 GAVIDTTCMLWQQECGVQGSCWEYNVTSFRFVYFGLAAGLKFVGFIFIFLAWYSIKYKED 713

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
            +++   +     T S +  +           
Sbjct: 714 ELQRQRWREFPLSTVSEMVGHTDNADKYARTR 745


>gi|203284703|ref|YP_002222443.1| hypothetical protein BDU_815 [Borrelia duttonii Ly]
 gi|201084146|gb|ACH93737.1| conserved hypothetical integral membrane protein [Borrelia duttonii
           Ly]
          Length = 429

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 1/197 (0%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           YI+    + F ++ LF +F+ ++ QIL  + ++  +            Y +P V+ +  P
Sbjct: 11  YIITEFCKYFFITFLFFLFVFFINQILFFMRILLQNYVPFFKAFIFVIYSLPMVVALSPP 70

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
           F   +     +     N E+L   + G S   L+ P L L +++++  FI  + + P   
Sbjct: 71  FAALLSVILTIYRFKLNNEILAFRSIGISISNLLTPFLKLGVIIALVSFILNDFLLPLGS 130

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
               ++    +  +    L+     +   DL     + +        F  ++R     +I
Sbjct: 131 IGRLKIFNDIKEEIPHLILKPYSSKQYG-DLIFVSGEKSETGYKNVTFFDNTRLKGYDRI 189

Query: 187 YYAQSGSIDLDRQAIIL 203
           + A+  +I  +   +  
Sbjct: 190 FMAKELNIQKENHQVYF 206



 Score = 36.1 bits (81), Expect = 7.6,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 37/109 (33%), Gaps = 2/109 (1%)

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
           N  P            +  EF+++++  L  + F  ++          ++   I  + IS
Sbjct: 322 NYAPYEDLIANRSYAFFYLEFYQKISLPLSVLFFIFLA--FGMGMYSNKKYSIILELVIS 379

Query: 312 LSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           + I    +  F        Q+     ++ +    +  +  L++  +  K
Sbjct: 380 ILICVFYWAMFMGGKVYTVQHAPNPILVIILPNILLMVAGLILFLRLLK 428


>gi|119490837|ref|XP_001263115.1| ATP-binding cassette transporter [Neosartorya fischeri NRRL 181]
 gi|119411275|gb|EAW21218.1| ATP-binding cassette transporter [Neosartorya fischeri NRRL 181]
          Length = 1482

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/169 (5%), Positives = 39/169 (23%), Gaps = 2/169 (1%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETT 74
            F    +  + +  +  + + I  +S + +   +   I    +      V P  + +   
Sbjct: 620 FFFYLLVVFLIVLAMSGVFRFIGALSRTEQQAMVPASILMLALLVFTGFVAPIRYMLSWC 679

Query: 75  NVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSA 134
             +     N      +    +            I        +    +       +    
Sbjct: 680 RWI--NYLNPVAYGYEALMVNEYHARNFTCLSYIPSYGTAGTTTVACDAVGAVPGQSYVN 737

Query: 135 KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                 +      +  +R    + + +   +    L   ++   +    
Sbjct: 738 GDVYINSAYSYYHSHKWRNVGIIVVMVIFNHIVYFLASEYVTAKKSKGE 786


>gi|294868464|ref|XP_002765551.1| ribosomal protein S9, putative [Perkinsus marinus ATCC 50983]
 gi|239865594|gb|EEQ98268.1| ribosomal protein S9, putative [Perkinsus marinus ATCC 50983]
          Length = 530

 Score = 38.4 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 6/87 (6%), Positives = 25/87 (28%), Gaps = 3/87 (3%)

Query: 277 TQWLFPVIFGLISIVA---ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
           +  +  +I   +++     A          K   I +             ++    +   
Sbjct: 290 SSPILILIIVALTLFFTFGALMALRAPAGSKWRAIILPKMGIIFCSLLVWFVFTGSDVYT 349

Query: 334 YYIPILYLFLFCISSIFLLMIKKKYTK 360
             I  + +     ++++L    ++  +
Sbjct: 350 VLILCIPVAGPMFAALWLWYRDRRQKR 376


>gi|203288235|ref|YP_002223250.1| hypothetical protein BRE_818 [Borrelia recurrentis A1]
 gi|201085455|gb|ACH95029.1| conserved hypothetical integral membrane protein [Borrelia
           recurrentis A1]
          Length = 429

 Score = 38.4 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 78/197 (39%), Gaps = 1/197 (0%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           YI+    + F ++ LF +F+ ++ QIL  + ++  +  S         Y +P V+ +  P
Sbjct: 11  YIITEFCKYFFITFLFFLFVFFINQILFFMRILLQNYVSFFKAFIFVIYSLPMVVALSPP 70

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
           F   +     +     N E+L   + G S   L+ P L L +++++  FI  + + P   
Sbjct: 71  FAALLSVILTIYRFKLNNEILAFRSIGISISNLLTPFLKLGVIIALVSFILNDFLLPLGS 130

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
               ++    +  +    L+     +   DL     + +        F  ++R     +I
Sbjct: 131 IGRLKIFNDIKEEIPHLILKPYSSKQYG-DLIFVSGEKSETGYKNVTFFDNTRLKGYDRI 189

Query: 187 YYAQSGSIDLDRQAIIL 203
           + A+  +I  +   +  
Sbjct: 190 FMAKELNIQKENHQVYF 206



 Score = 36.1 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 37/109 (33%), Gaps = 2/109 (1%)

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
           N  P            +  EF+++++  L  + F  ++          ++   I  + IS
Sbjct: 322 NYAPYEDLIANRSYAFFYLEFYQKISLPLSVLFFIFLA--FGMGMYSNKKYSIILELVIS 379

Query: 312 LSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           + I    +  F        Q+     ++ +    +  +  L++  +  K
Sbjct: 380 ILICVFYWAMFMGGKVYTVQHAPNPILVIILPNILLMVAGLILFLRLLK 428


>gi|238061457|ref|ZP_04606166.1| hypothetical protein MCAG_02423 [Micromonospora sp. ATCC 39149]
 gi|237883268|gb|EEP72096.1| hypothetical protein MCAG_02423 [Micromonospora sp. ATCC 39149]
          Length = 653

 Score = 38.4 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS---LSISFGVFWGFSYIIHKIEQN 332
           L      +   ++  V   + A    R+  + +  +   ++I       + + +  I   
Sbjct: 409 LIFRWAVIAAPILGTVGLMRPASAGLRRLANAVVAAVFNIAIFGTGAAIYLFAVDLIMST 468

Query: 333 PYYIPILYLFLFCISSIFLLMIKKKYTKI 361
           P     L + L  +  +   ++ + Y +I
Sbjct: 469 PTLPGWLQVVLVWLCGVVGWLLLRPYRRI 497


>gi|218249949|ref|YP_002375305.1| hypothetical protein BbuZS7_0837 [Borrelia burgdorferi ZS7]
 gi|226321272|ref|ZP_03796800.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi Bol26]
 gi|218165137|gb|ACK75198.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi ZS7]
 gi|226233304|gb|EEH32055.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi Bol26]
          Length = 429

 Score = 38.4 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 4/178 (2%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK      E YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y 
Sbjct: 1   MKILKNSYESYIIAEFFKYFLITFLFFFFVFFINQILFFMRILLQNYVPFFKAFIFIIYS 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P V+ +  PF   +     +     + E+L   + G S   LI P   L I+++   FI
Sbjct: 61  LPMVIALSPPFASLISVILTIHKFKLHNEILAFRSIGISIFDLIVPFFKLGIVIAFVSFI 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           S +I+ P       ++  + +  +    L+     +  D +++   K          F
Sbjct: 121 SNDILLPLGSIGRLKIFNEIKEEVPHLVLKPYSSKQYGDLIFVSGEKSENGYKNVTFF 178



 Score = 36.5 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 2/110 (1%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           LN  P       + L  +  EF+++++  L  + F  ++          R+   I  + I
Sbjct: 321 LNFKPYQDRSMKQNLALFNLEFYQKISLPLSVLFFIFLAFSMGMYS--NRKYSIILELVI 378

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           S+ +    +  F        Q      I+ +    I  I   ++  +  K
Sbjct: 379 SIIVCVFYWVMFIGGKVYTVQYAPSPIIVTILPNLILIIAGAILFLRLLK 428


>gi|15595152|ref|NP_212941.1| hypothetical protein BB0807 [Borrelia burgdorferi B31]
 gi|221217627|ref|ZP_03589096.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 72a]
 gi|225551663|ref|ZP_03772607.1| conserved hypothetical integral membrane protein [Borrelia sp. SV1]
 gi|226320854|ref|ZP_03796406.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 29805]
 gi|2688742|gb|AAC67148.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi B31]
 gi|221192573|gb|EEE18791.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 72a]
 gi|225371690|gb|EEH01116.1| conserved hypothetical integral membrane protein [Borrelia sp. SV1]
 gi|226233720|gb|EEH32449.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 29805]
          Length = 429

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 4/178 (2%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK      E YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y 
Sbjct: 1   MKILKNSYESYIIAEFFKYFLITFLFFFFVFFINQILFFMRILLQNYVPFFKAFIFIIYS 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P V+ +  PF   +     +     + E+L   + G S   L+ P   L I+++   FI
Sbjct: 61  LPMVIALSPPFASLISVILTIHKFKLHNEILAFRSIGISIFDLLVPFFKLGIVIAFVSFI 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           S +I+ P       ++  + +  +    L+     +  D +++   K          F
Sbjct: 121 SNDILLPLGSIGRLKIFNEIKEEVPHLVLKPYSSKQYGDLIFVSGEKSENGYKNVTFF 178



 Score = 36.5 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 2/110 (1%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           LN  P       + L  +  EF+++++  L  + F  ++          R+   I  + I
Sbjct: 321 LNFKPYQDRSMKQNLALFNLEFYQKISLPLSVLFFIFLAFSMGMYS--NRKYSIILELVI 378

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           S+ +    +  F        Q      I+ +    I  I   ++  +  K
Sbjct: 379 SIIVCVFYWVMFIGGKVYTVQYAPSPIIVTILPNLILIIAGAILFLRLLK 428


>gi|168204628|ref|ZP_02630633.1| hypothetical protein AC3_0845 [Clostridium perfringens E str.
           JGS1987]
 gi|170663786|gb|EDT16469.1| hypothetical protein AC3_0845 [Clostridium perfringens E str.
           JGS1987]
          Length = 721

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 38/345 (11%), Positives = 94/345 (27%), Gaps = 17/345 (4%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +     +    +  VFI ++  ++ ++  V  S   +           P +  ++  
Sbjct: 16  YFSKSNFIIYGFRLVGWVFIKFLGFLVDKLEDVVKSVTVVTDFF-----NSPEITNLINK 70

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI-----SENII 121
           F   +    V + +    +L+I      S++ +   +    I++           +  +I
Sbjct: 71  FSPLLYLLLVASIIFIGYQLVINKKFDRSKLPMNIILALCIIVVMPLAMSKANILTNKVI 130

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF--IVDSR 179
                 +       +        L++  F   DD     I   N           I +  
Sbjct: 131 GEIQGESQFSDQIISNNVTDLYLLDQANFPIKDDGTVGDIDPKNNVGNNITKINPIEEID 190

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             + +     ++  I   +    LN      K         + + +  +         I 
Sbjct: 191 RDKVNNKKVFENEIIFDSKGEAKLNKIVGLFKWDDEYYRYHINYMTIIVTLLITAFVMIF 250

Query: 240 LKANDQNLSFLLNPNP----NNPNYRPELLETYRSEFHKRLTQWLFPVI-FGLISIVAAD 294
                  LS  L  +               +  R   +  ++ ++  +    ++ +    
Sbjct: 251 TSVKMIKLSIELAFSKVMTTFVAVADLSNGQRMRQSVNGIISIFVAMISTMLMLKLYILG 310

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
              L  +   I  I   L  +  V  G +YI      +     + 
Sbjct: 311 TAYLSDKISGIGTICAMLGCAIFVIDGPNYIEKMFGVDAGLSSVW 355


>gi|110003954|emb|CAK98294.1| hypothetical transmembrane protein [Spiroplasma citri]
          Length = 990

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/274 (8%), Positives = 75/274 (27%), Gaps = 20/274 (7%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   I    +++    V +  +  +  +++ V          +K+    +     +   
Sbjct: 60  YLTGDIWGYTIIALTIFVALLVITLVSVQLHRVKKGQLIAKPYIKMIFVTLIIAALIYGK 119

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +    +          + +    +S   +     F+     I ++  +  +E +  
Sbjct: 120 VAVLILAALMF---------IGLLFIESSLFDVEFLQNFVEERNMIVIYHQDKKLEREVN 170

Query: 127 ST-IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHK 185
                  S    +  T + + E      ++D   +      ++     F + +       
Sbjct: 171 KEGKYHGSVTLGVDATIAGIGETERNFKNNDYVREDDSKKLSHQKSNSFFLSNELNNL-- 228

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA--- 242
            + +    +D    A ++N+      +P    +   K  +     +   S  +       
Sbjct: 229 -FNSDKNDVDEHELANLINNMTQTMTNPPKPAVFETKLNTTETNLKQNESKELSKPPVVN 287

Query: 243 ----NDQNLSFLLNPNPNNPNYRPELLETYRSEF 272
                + +   L      N +   +      +E 
Sbjct: 288 EVEQQETSKLELEQLEEQNSSNDEDSQGETVAEI 321


>gi|216264700|ref|ZP_03436692.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 156a]
 gi|223889298|ref|ZP_03623885.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 64b]
 gi|224533066|ref|ZP_03673671.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi WI91-23]
 gi|225549397|ref|ZP_03770369.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 94a]
 gi|225550295|ref|ZP_03771254.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 118a]
 gi|215981173|gb|EEC21980.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 156a]
 gi|223885219|gb|EEF56322.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 64b]
 gi|224512002|gb|EEF82398.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi WI91-23]
 gi|225369163|gb|EEG98617.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 118a]
 gi|225370025|gb|EEG99466.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 94a]
 gi|312147984|gb|ADQ30643.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi JD1]
 gi|312149484|gb|ADQ29555.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi N40]
          Length = 429

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 4/178 (2%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK      E YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y 
Sbjct: 1   MKILKNSYESYIIAEFFKYFLITFLFFFFVFFINQILFFMRILLQNYVPFFKAFIFIIYS 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P V+ +  PF   +     +     + E+L   + G S   L+ P   L I+++   FI
Sbjct: 61  LPMVIALSPPFASLISVILTIHKFKLHNEILAFRSIGISIFDLLVPFFKLGIVIAFVSFI 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           S +I+ P       ++  + +  +    L+     +  D +++   K          F
Sbjct: 121 SNDILLPLGSIGRLKIFNEIKEEVPHLVLKPYSSKQYGDLIFVSGEKSENGYKNVTFF 178



 Score = 36.1 bits (81), Expect = 7.4,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 2/110 (1%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           LN  P       + L  +  EF+++++  L  + F  ++          R+   I  + I
Sbjct: 321 LNFKPYQDRSMKQNLALFNLEFYQKISLPLSVLFFIFLAFSMGMYS--NRKYSIILELVI 378

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           S+ +    +  F        Q      I+ +    I  I   ++  +  K
Sbjct: 379 SIIVCVFYWVMFIGGKVYTVQYAPSPIIVTILPNLILIIAGAILFLRLLK 428


>gi|195941983|ref|ZP_03087365.1| hypothetical protein Bbur8_03799 [Borrelia burgdorferi 80a]
          Length = 429

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 4/178 (2%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK      E YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y 
Sbjct: 1   MKILKNSYESYIIAEFFKYFLITFLFFFFVFFINQILFFMRILLQNYVPFFKAFIFIIYS 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P V+ +  PF   +     +     + E+L   + G S   L+ P   L I+++   FI
Sbjct: 61  LPMVIALSPPFASLISVILTIHKFKLHNEILAFRSIGISIFDLLVPFFKLGIVIAFVSFI 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           S +I+ P       ++  + +  +    L+     +  D +++   K          F
Sbjct: 121 SNDILLPLGSIGRLKIFNEIKEEVPHLVLKPYSSKQYGDLIFVSGEKSENGYKNVTFF 178



 Score = 36.5 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 1/108 (0%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           LN  P       + L  +  EF+++++  L  + F  ++                  I I
Sbjct: 321 LNFKPYQDRSMKQNLALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISI 380

Query: 311 SLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            + + +  +F G      +   NP  + IL   +  I+   L +   K
Sbjct: 381 IVCVFYWVMFIGGKVYTVQYAPNPIIVTILPNLILIIAGAILFLRLLK 428


>gi|269986885|gb|EEZ93162.1| hypothetical protein BJBARM4_0254 [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 744

 Score = 38.4 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 2/73 (2%)

Query: 280 LFPVIFGLIS--IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
           + P +FG+I+  I A      +R  +        L I F +             NP  + 
Sbjct: 162 ILPFVFGMIAVLIFAVLLIKGIRNSRNTAVRVALLFIVFLMITLLIPGFAGFLFNPIVLT 221

Query: 338 ILYLFLFCISSIF 350
            +++ +   + I+
Sbjct: 222 AIFVAIILAAVIY 234


>gi|222086411|ref|YP_002544945.1| acriflavin resistance (multidrug efflux transporter) protein
           [Agrobacterium radiobacter K84]
 gi|221723859|gb|ACM27015.1| acriflavin resistance (multidrug efflux transporter) protein
           [Agrobacterium radiobacter K84]
          Length = 1054

 Score = 38.4 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 23/79 (29%)

Query: 270 SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
            E  KR+   L P    LI +  A           +   F  + I   +   F  ++  +
Sbjct: 832 VEEVKRIAAPLLPPGARLIPLAEAATLQENSSGMALTFGFAIIIIFLVLAAQFESVLSSL 891

Query: 330 EQNPYYIPILYLFLFCISS 348
                    L   +F +  
Sbjct: 892 IIMSTVPLGLACAIFALVI 910


>gi|60680827|ref|YP_210971.1| putative anti-sigma factor [Bacteroides fragilis NCTC 9343]
 gi|60492261|emb|CAH07026.1| putative anti-sigma factor [Bacteroides fragilis NCTC 9343]
          Length = 340

 Score = 38.4 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/86 (10%), Positives = 19/86 (22%)

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
                          +   + +N   +L     +     + +        KR    L   
Sbjct: 41  DQLYYMLFVGERKVAMDGVDTENSLSVLKDRIKHKESEKKSVHRIHVSKWKRYAMPLAAF 100

Query: 284 IFGLISIVAADKRALVRQRKKIHPIF 309
           + GL+  V A       +        
Sbjct: 101 LCGLLVSVGALYWISSGKSAGYIFAT 126


>gi|124513908|ref|XP_001350310.1| conserved Plasmodium membrane protein, unknown function [Plasmodium
           falciparum 3D7]
 gi|23615727|emb|CAD52719.1| conserved Plasmodium membrane protein, unknown function [Plasmodium
           falciparum 3D7]
          Length = 2126

 Score = 38.4 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 45/156 (28%), Gaps = 5/156 (3%)

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP- 262
            +    R    + + ++ +  S ++             + +      L       +YR  
Sbjct: 339 KNENHVRIDKNNVNDNMKELHSNSMGYIDIRKKRKKELSKELKNMDWLIYTIRYMDYRRL 398

Query: 263 -ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI---SFGV 318
                  R    K++   +      LIS    +      +      I  SL     +  +
Sbjct: 399 RRRFSGIRKPISKKIVFIITIFCLILISWKYFNISYENNKFSFSFEIQTSLLFFVEAILL 458

Query: 319 FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             G         +   + PI   ++F I ++ LL+ 
Sbjct: 459 TIGIIIFAKFQTRLSLHWPIYASYIFIICAVILLLF 494


>gi|163788476|ref|ZP_02182922.1| hypothetical protein FBALC1_08843 [Flavobacteriales bacterium
           ALC-1]
 gi|159876796|gb|EDP70854.1| hypothetical protein FBALC1_08843 [Flavobacteriales bacterium
           ALC-1]
          Length = 1188

 Score = 38.1 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/289 (10%), Positives = 77/289 (26%), Gaps = 7/289 (2%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAW---VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             Y        FLMS L          +  +   ++    ++  L+  L     ++   +
Sbjct: 94  HQYFWSQFIGVFLMSSLAFSMFLVGFGITTLFPNLDPELVNSFQLSHYLWSILIIVLPNI 153

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            + T   F++   +        + +LI        I L  PV+  +  +S   +    + 
Sbjct: 154 FICTSIIFSVSILSKNNVATYVSAILIYVLYFLCSIFLNSPVMAQSTPVSADSYALAALF 213

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           +P   S + + +         +         + + +      +        +F       
Sbjct: 214 DPFALSAMFEQTQFWTTFQKNTMSLSFSGHFMWNRILWISLSFVVLLVSYKLFSFRKSQQ 273

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +  K+   Q+ +I+      +  +            +  ++ K+            +   
Sbjct: 274 KIKKVIKIQNENIEAYAYQAVKVNITNKSHKNAFFSLLRLELKNVFKSLPFIGVLILWAV 333

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                +   +N      N           E     T  L  +   LI  
Sbjct: 334 IVFIEILSRINEGGAY-NDSLYPATNLLLEL---FTMPLTALSLILIVF 378


>gi|212716032|ref|ZP_03324160.1| hypothetical protein BIFCAT_00944 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661399|gb|EEB21974.1| hypothetical protein BIFCAT_00944 [Bifidobacterium catenulatum DSM
           16992]
          Length = 481

 Score = 38.1 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 28/77 (36%)

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
           L   +  +I +   +     R+   +  I + L++       F+  I    Q+   + +L
Sbjct: 21  LLAAVMFVIGLHLMNSPKTARKGNMVSAIGMILAVVMAFIVLFAGEISNGFQHGVAVVLL 80

Query: 340 YLFLFCISSIFLLMIKK 356
              +   +   ++  KK
Sbjct: 81  IAGIIIGAVAGVVSAKK 97


>gi|149721453|ref|XP_001493458.1| PREDICTED: similar to solute carrier organic anion transporter
           family, member 5A1 [Equus caballus]
          Length = 852

 Score = 38.1 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 34/128 (26%), Gaps = 3/128 (2%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQ---ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
                FL+    + FI    Q   I+  +  V        + ++         +P    F
Sbjct: 649 NTLIPFLIFLFIVTFITACAQPSAIIVTLRSVEDEERPFALGMQFVLLRTLAYIPTPIYF 708

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              ++TT +L       +    +   TS   +   +      +                 
Sbjct: 709 GAVIDTTCMLWQHECGVQGSCWEYNVTSFRFVYFGLAAGLKFVGFVFIFLAWYSIKYKED 768

Query: 128 TIKQLSAK 135
            +++   +
Sbjct: 769 ELQRRRWR 776


>gi|331700964|ref|YP_004397923.1| hypothetical protein Lbuc_0594 [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128307|gb|AEB72860.1| hypothetical protein Lbuc_0594 [Lactobacillus buchneri NRRL
           B-30929]
          Length = 247

 Score = 38.1 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           ++  +  +   +++++        R    I  I + L +   +       I     NP  
Sbjct: 159 ISAAVAGLGIPIVTMMFTP-GVKHRFSIWIRIILVVLFLIVWMGIFTLSSILPPVLNPVL 217

Query: 336 IPILYLFLFCISSIFLLMIKKKY 358
            PI+Y+ L  +S +    +K+++
Sbjct: 218 NPIVYIVLGVLSGVAAFFVKRRF 240


>gi|67078108|ref|YP_245728.1| hypothetical protein pE33L466_0233 [Bacillus cereus E33L]
 gi|66970414|gb|AAY60390.1| conserved hypothetical protein [Bacillus cereus E33L]
          Length = 813

 Score = 38.1 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQ-RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           +   L   +  L+++V A      R   +    + + ++I F +   F            
Sbjct: 336 IIVALMSPVMLLMALVPAWTGTAKRFLSELFRTLLMKVAIGFLITLMFWVSSILFSATDK 395

Query: 335 YIPILYLFLFCISSIFLLMIKK 356
           Y  ++   L  +S + + + +K
Sbjct: 396 YGYLVVAALQVLSFLGVWLYRK 417


>gi|224543383|ref|ZP_03683922.1| hypothetical protein CATMIT_02583 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523710|gb|EEF92815.1| hypothetical protein CATMIT_02583 [Catenibacterium mitsuokai DSM
           15897]
          Length = 651

 Score = 38.1 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/154 (7%), Positives = 32/154 (20%), Gaps = 1/154 (0%)

Query: 75  NVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSA 134
                   +                +K         ++  +          +    + + 
Sbjct: 466 WYYIHNGVHQTSYSSLVLYNGTWYYVKNGKIDWHYTNLVQYHGTWYYVENGKINWGKNTL 525

Query: 135 KAQLALTFSYLEENLFF-RLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGS 193
                    Y  EN         L      +         +  +         +Y  +G 
Sbjct: 526 SQVNGHGAWYYIENSQINWHYTGLTQYFGTWYYIQNGALNWSYNGLVYYHGTWFYVHNGQ 585

Query: 194 IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
           ID +   ++L +G  +       D + +      
Sbjct: 586 IDWNYSNLVLYNGTWYYVENGKIDWNKITLSQVD 619


>gi|170032349|ref|XP_001844044.1| neurotransmitter gated ion channel [Culex quinquefasciatus]
 gi|167872330|gb|EDS35713.1| neurotransmitter gated ion channel [Culex quinquefasciatus]
          Length = 406

 Score = 38.1 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/253 (8%), Positives = 62/253 (24%), Gaps = 4/253 (1%)

Query: 112 IFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ 171
             +F     ++ K      + +      L          +R D  LY      +  +   
Sbjct: 75  NSIFTVSGWLKMKWNDDKLKWNPDDYGKLNVIRTNPESVWRPDLVLYNNARPSDIEHYGM 134

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVH----RKSPISKDISIMKFKSYT 227
              ++ +              +  L+ +    +           +     ++I +F    
Sbjct: 135 TNVLIYNTGEVLWVPPTDYHANCKLNLRFWPFDQQTCFVKIGSWTFDGYKLNISEFGKAK 194

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
           +  +  N+   VL       + +    P         +   R     R        +  L
Sbjct: 195 VDIDVDNNEWTVLDLATDIHTTIYECCPEPYMDIRYNVTLQRQSSTHRAIVISPAFVIML 254

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
           +++          ++  ++ I   +   F +++                           
Sbjct: 255 LALSVFWLPPNCGEKIVLNGIIALIVTVFLIYFATQLPAMSGNTPLIVTFFSTTLYLVAF 314

Query: 348 SIFLLMIKKKYTK 360
              L +I  + ++
Sbjct: 315 GTILSVIVLRMSR 327


>gi|116668913|ref|YP_829846.1| putative ribonuclease BN [Arthrobacter sp. FB24]
 gi|116609022|gb|ABK01746.1| putative ribonuclease BN [Arthrobacter sp. FB24]
          Length = 377

 Score = 38.1 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/89 (8%), Positives = 35/89 (39%), Gaps = 12/89 (13%)

Query: 274 KRLTQW--LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
             + +W  +  ++   I+++      + + + +   +  ++++   +    ++  +    
Sbjct: 221 WNIAKWPVMLVLVIAAIAVLFYATPNVKQPKFRWMSMGSAIALVVFLLASLAFGFYVANF 280

Query: 332 N----------PYYIPILYLFLFCISSIF 350
           N             I +L+L++  +S +F
Sbjct: 281 NSYNKTYGAIGGVIIALLWLWILNMSLLF 309


>gi|54262214|ref|NP_001005820.1| transmembrane channel-like protein 3 [Gallus gallus]
 gi|82197656|sp|Q5YCC7|TMC3_CHICK RecName: Full=Transmembrane channel-like protein 3
 gi|52547957|gb|AAT85601.1| transmembrane channel-like 3 [Gallus gallus]
          Length = 1138

 Score = 38.1 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 41/153 (26%), Gaps = 5/153 (3%)

Query: 190 QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSF 249
           +  +I   ++    N  E   +           F++   Q E  ++         Q L  
Sbjct: 26  RHANIYTYQEPPHSNSDEDISEEKADSQDPEQVFQNIQYQKEVMSNIRCRPWPMRQKLRV 85

Query: 250 LLNPNPNNPNYRPELLE-----TYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
           L         Y   L          +E  ++  +  +  +   I      K+        
Sbjct: 86  LRQAKEIVLKYEGRLTRTRGYQAAGAELWRKFLRLAYNFVVLFIPWEMRIKKIESHFGSG 145

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
           +   FI L   FG+    + +       P  + 
Sbjct: 146 VASYFIFLRWLFGINIVLTIMTGAFVVLPELLA 178


>gi|224476219|ref|YP_002633825.1| hypothetical protein Sca_0730 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420826|emb|CAL27640.1| putative membrane protein [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 266

 Score = 38.1 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 20/93 (21%)

Query: 265 LETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY 324
             +Y  E    + + +  ++  LI+ V        R    I  +  ++   F        
Sbjct: 48  SSSYLQE--SMIFEAVALIVVALIAAVGIVLSKKNRIIGGILLVIAAIVGIFLSN----- 100

Query: 325 IIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                         +   LF I+ I L + + +
Sbjct: 101 -------------FIATILFFIAGIMLFVRRSQ 120


>gi|301766258|ref|XP_002918549.1| PREDICTED: solute carrier organic anion transporter family member
           5A1-like isoform 1 [Ailuropoda melanoleuca]
 gi|281351670|gb|EFB27254.1| hypothetical protein PANDA_007020 [Ailuropoda melanoleuca]
          Length = 855

 Score = 38.1 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 38/152 (25%), Gaps = 3/152 (1%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQ---ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
                FL+    + FI    Q   I+  +  V        + ++         +P    F
Sbjct: 649 NTLIPFLIFLFIVTFITACAQPSAIIVTLRSVEDEERPFALGMQFVLLRTLAYIPTPIYF 708

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              ++TT +L       +    +   TS   +   +      +                 
Sbjct: 709 GAVIDTTCMLWQQECGVQGSCWEYNVTSFRFVYFGLAAGLKFVGFIFIFLAWYSIKYKED 768

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
            +++   +     T S +  +           
Sbjct: 769 ELQRQRWREFPLSTVSEMVGHTDNADKYARTR 800


>gi|256374478|ref|YP_003098138.1| hypothetical protein Amir_0323 [Actinosynnema mirum DSM 43827]
 gi|255918781|gb|ACU34292.1| putative membrane protein [Actinosynnema mirum DSM 43827]
          Length = 442

 Score = 38.1 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/86 (9%), Positives = 28/86 (32%), Gaps = 3/86 (3%)

Query: 279 WLFPVIFG-LISIVAADKRALVRQRKKIHP--IFISLSISFGVFWGFSYIIHKIEQNPYY 335
                +F  ++ I         ++  +I    +    ++     W FS  +         
Sbjct: 202 PFAHPLFTSMLGIGVGLAAMSHKRGVRIAGPLLGYLGAVGLHSLWNFSTTVGTGSTFINL 261

Query: 336 IPILYLFLFCISSIFLLMIKKKYTKI 361
             ++ + +F      ++  +++  +I
Sbjct: 262 YFLIMVPIFAGMVWLVVWQRRREQRI 287


>gi|326926750|ref|XP_003209560.1| PREDICTED: LOW QUALITY PROTEIN: transmembrane channel-like protein
           3-like [Meleagris gallopavo]
          Length = 1143

 Score = 38.1 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 42/160 (26%), Gaps = 5/160 (3%)

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                  +  +I   ++    N  E   +   +       F++   Q E  ++       
Sbjct: 19  KKYRMVKRHANIYTYQEPPHSNSDEDIGEEKANSHDPEQVFQNIQYQKEVMSNIRCRPWP 78

Query: 243 NDQNLSFLLNPNPNNPNYRPELLE-----TYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             Q L  L         Y   L          +E  ++  +  +  +   I      K+ 
Sbjct: 79  MRQKLRALRQAKEIVLKYEGRLTRTRGYQAAGAELWRKFLRLAYNFVVLFIPWEMRIKKI 138

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
                  +   FI L   FG+    + +       P  + 
Sbjct: 139 ESHFGSGVASYFIFLRWLFGINIVLTIMTGAFVVLPELLA 178


>gi|317035868|ref|XP_001397079.2| hypothetical protein ANI_1_1614134 [Aspergillus niger CBS 513.88]
          Length = 764

 Score = 38.1 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 2/94 (2%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           ++       Y P            R       ++  LI   +A  R    +   I  I  
Sbjct: 344 ISYTVKYLAYSPSKYYKDLETNWFRFGIVATILMSLLIPFSSATLRKRYYEVFLIIHILS 403

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           ++ I   +F   S      E  P+  P++ ++ F
Sbjct: 404 AIVIVCALFIHISKFG--TEYTPHLWPVVAIWSF 435


>gi|315040666|ref|XP_003169710.1| ATP-binding cassette transporter [Arthroderma gypseum CBS 118893]
 gi|311345672|gb|EFR04875.1| ATP-binding cassette transporter [Arthroderma gypseum CBS 118893]
          Length = 1460

 Score = 37.7 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/169 (7%), Positives = 37/169 (21%), Gaps = 2/169 (1%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETT 74
            F    +  + +  +  I + I  +S + +   +   I    +      V P  + +   
Sbjct: 601 FFFYLLVVFLIVLGMSGIFRFIGSLSRTEQQAMVPASIMMLALLIFTGFVVPIDYMLPWC 660

Query: 75  NVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSA 134
             +     N      +    +            I       ++          T      
Sbjct: 661 RWI--HYLNPVAYGYEALMINEFHGRNFPCTSYIPDYTNTSLNNVACNAVGAITGSTYVN 718

Query: 135 KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                 T      +  +R    +       +    +   +I   +    
Sbjct: 719 GDHYINTAYRYYRSHKWRNVSIILAMAVFNHLIYFITSEYIRAKKSKGE 767


>gi|301611698|ref|XP_002935370.1| PREDICTED: solute carrier organic anion transporter family member
           5A1-like [Xenopus (Silurana) tropicalis]
          Length = 879

 Score = 37.7 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 47/180 (26%), Gaps = 3/180 (1%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQ---ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
                FL+    +  I    Q   I+  +  V        + ++         +P    F
Sbjct: 677 NTLIPFLIFLFIVTLITACAQPSAIIVTLRSVEEGERPFALGMQFVLLRTLAYIPTPIYF 736

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              ++TT +L   +   +    +   TS   +   +      L                 
Sbjct: 737 GAVIDTTCMLWQQDCGVQGSCWEYNVTSFRFVYFGLAAGLKFLGFIFIFLAWYSIKHKED 796

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            +++   +A    T S +  N+    +         +           ++     T + Y
Sbjct: 797 QLQRRRWRASPISTVSEMVSNVTAGQNYARTRSCPTFGAREEPNENININRGIQHTAQTY 856


>gi|291388101|ref|XP_002710508.1| PREDICTED: solute carrier organic anion transporter family, member
           5A1 [Oryctolagus cuniculus]
          Length = 851

 Score = 37.7 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 34/130 (26%), Gaps = 3/130 (2%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQ---ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
                FL+    + FI    Q   I+  +  V        + ++         +P    F
Sbjct: 649 NTLIPFLVFLFIVTFITACAQPSAIIVTLRSVEDEERPFALGMQFVLLRTLAYIPTPIYF 708

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              ++TT +L       +    +   TS   +   +      +                 
Sbjct: 709 GAVIDTTCMLWQQECGVQGSCWEYNVTSFRFVYFGLAAGLKFVGFIFIFLAWYSIKYKEE 768

Query: 128 TIKQLSAKAQ 137
             ++   + +
Sbjct: 769 GRQRQRWRER 778


>gi|73999471|ref|XP_535098.2| PREDICTED: similar to organic anion transporter polypeptide-related
           protein 4 [Canis familiaris]
          Length = 851

 Score = 37.7 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 38/152 (25%), Gaps = 3/152 (1%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQ---ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
                FL+    + FI    Q   I+  +  V        + ++         +P    F
Sbjct: 649 NTLIPFLIFLFIVTFITACAQPSAIIVTLRSVEDEERPFALGMQFVLLRTLAYIPTPIYF 708

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              ++TT +L       +    +   TS   +   +      +                 
Sbjct: 709 GAVIDTTCMLWQQECGVQGSCWEYNVTSFRFVYFGLAAGLKFVGFIFIFLAWYSIKYKED 768

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
            +++   +     T S +  +           
Sbjct: 769 ELQRQRWREFPLSTVSEMVGHTDNADKYARTR 800


>gi|239813399|ref|YP_002942309.1| histidine kinase [Variovorax paradoxus S110]
 gi|239799976|gb|ACS17043.1| histidine kinase [Variovorax paradoxus S110]
          Length = 657

 Score = 37.7 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/82 (9%), Positives = 29/82 (35%), Gaps = 3/82 (3%)

Query: 279 WLFPVIFGLISIVAADKRALV--RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
            L  +   L+ +  A    +   R+  +   + + + +   +      + +    +P   
Sbjct: 338 PLIYLGAALMGVAVALVGGISAWRRSGEGRLVAVGIGVCVLLGVSDWLLQNNFV-SPEGW 396

Query: 337 PILYLFLFCISSIFLLMIKKKY 358
            +         S+F +++ ++Y
Sbjct: 397 YLGAYTNAVTFSVFGVLLYRRY 418


>gi|224534174|ref|ZP_03674754.1| conserved hypothetical integral membrane protein [Borrelia
           spielmanii A14S]
 gi|224514599|gb|EEF84913.1| conserved hypothetical integral membrane protein [Borrelia
           spielmanii A14S]
          Length = 429

 Score = 37.7 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 1/108 (0%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           LN  P       + L  +  EF+++++  L  + F  ++                  I I
Sbjct: 321 LNFKPYQDRSMKQNLALFNLEFYQKISLPLSVLFFIFLAFSMGLYSNRKYSIILELVISI 380

Query: 311 SLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            + + +  +F G      +   NP  + IL   +  I+   L +   K
Sbjct: 381 IICVFYWVMFIGGKVYTVQYAPNPIIVTILPNLILIIAGAILFLRILK 428



 Score = 37.7 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 81/207 (39%), Gaps = 5/207 (2%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK      E YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y 
Sbjct: 1   MKILKNSYESYIIAEFFKYFLITFLFFFFVFFINQILFFMRILLQNYVPFFKAFIFIIYS 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P V+ +  PF   +     +     + E+L   + G S   L+ P   L I++    FI
Sbjct: 61  LPMVIALSPPFASLISVILTIHKFKIHNEILAFRSIGISIFDLLVPFFKLGIIIVFISFI 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           S +I+ P       ++  + +  +    L+     +   DL     + + N      F  
Sbjct: 121 SNDILLPLGSIGRLKIFNEIKEEVPHLVLKPYSSKQYG-DLIFVSGEKSENGYKNVTFFD 179

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIIL 203
           ++R     +I+ A++  I  +   +  
Sbjct: 180 NTRLKGFDRIFMAKNLDIRKENFQVYF 206


>gi|327269805|ref|XP_003219683.1| PREDICTED: solute carrier organic anion transporter family member
           5A1-like [Anolis carolinensis]
          Length = 869

 Score = 37.7 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 39/152 (25%), Gaps = 3/152 (1%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQ---ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
                FL+    +  I    Q   I+  +  V        + ++         +P    F
Sbjct: 667 NTLIPFLVFLFIVTLITACAQPSAIIVTLRSVEDGERPFALGMQFVLLRTLAYIPTPIYF 726

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              ++TT +L       +    +   TS   +   +      +                 
Sbjct: 727 GAVIDTTCMLWQQECGVQGSCWEYDVTSFRFVYFGLAAGLKCVGFLFIFLAWYSIKYKEE 786

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
            +++   +     T + +  N   + +     
Sbjct: 787 KLQRQMWRDSHISTVNEVVGNTGMQQNYARTR 818


>gi|328675456|gb|AEB28131.1| Cell division protein FtsK [Francisella cf. novicida 3523]
          Length = 830

 Score = 37.7 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 70/253 (27%), Gaps = 7/253 (2%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           YI   I   F +     +    +I  ++ + L+    +S    L    + + T+  +V  
Sbjct: 64  YIASFILSIFGVI--GFILPFLLIDFVRIL-LIKRKQQS----LSYLLFAVKTIGIIVFI 116

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
                     L+  N           G   + L    L         L      +     
Sbjct: 117 LSCCGLAELYLSFANYWVPQRSGGILGYESVKLTIKYLGSVGGSFALLIALLVGLTLYSG 176

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           +T   L     + +  ++         DD     IS +        +    +RD +    
Sbjct: 177 TTWMYLFKNLAIFVAKAFSYITKAKTNDDKNIPDISNFETFEGKNNLTNPLNRDNKVISS 236

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
            +  +           + D          KD     F+   L+  + + S + L  +   
Sbjct: 237 IFEDNQQSHKKDVFREVLDNTKVTNELSFKDPKTESFQKPDLEILADSDSILDLDVDVDL 296

Query: 247 LSFLLNPNPNNPN 259
            S LL+ + N   
Sbjct: 297 DSELLSLSDNETK 309


>gi|218528322|ref|YP_002419138.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218520625|gb|ACK81210.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 766

 Score = 37.7 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 270 SEFHKRLTQWLFPVIFGL----ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYI 325
            E H  L+  L  +I  +    I     ++    R       + + + I+   + G + +
Sbjct: 72  MEAHYDLSLTLLSLIVPVAVTGIGFAVVNRPQRSRFALAASGLLMGIGIAAMHYTGMAAM 131

Query: 326 -IHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            +    +       + + +   +S   L +  K
Sbjct: 132 HVPASLRYDALWVAVSILIAVGASTIALWLAFK 164


>gi|111115642|ref|YP_710260.1| hypothetical protein BAPKO_0860 [Borrelia afzelii PKo]
 gi|110890916|gb|ABH02084.1| hypothetical protein BAPKO_0860 [Borrelia afzelii PKo]
          Length = 429

 Score = 37.7 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 81/207 (39%), Gaps = 5/207 (2%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK      E YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y 
Sbjct: 1   MKILKNSYESYIITEFFKYFLITFLFFFFVFFINQILFFMRILLQNYVPFFKAFIFIIYS 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P V+ +  PF   +     +     + E+L   + G S   L+ P   L I++    FI
Sbjct: 61  LPMVIALSPPFASLISVILTIHKFKIHNEILAFRSIGISIFDLLIPFFKLGIIIVFISFI 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
           S +I+ P       ++  + +  +    L+     +   DL     + + N      F  
Sbjct: 121 SNDILLPLGSIGRLKIFNEIKEEVPHLVLKPYSSKQYG-DLIFVSGEKSENGYKNVTFFD 179

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIIL 203
           ++R     +I+ A++  I  +   +  
Sbjct: 180 NTRLKGFDRIFMAKNLDIRKENFQVYF 206



 Score = 36.5 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 1/108 (0%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           LN  P       + L  +  EF+++++  L  + F  ++                  I I
Sbjct: 321 LNFKPYQNRSMNQNLALFNLEFYQKISLPLSVLFFIFLAFSMGLYSNKKYSIILELVISI 380

Query: 311 SLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            + + +  +F G      +   NP  + IL   +  I+   L +   K
Sbjct: 381 IICVFYWVMFIGGKVYTVQYAPNPIIVTILPNLILIIAGAILFLRLLK 428


>gi|219685677|ref|ZP_03540491.1| conserved hypothetical integral membrane protein [Borrelia garinii
           Far04]
 gi|219672793|gb|EED29818.1| conserved hypothetical integral membrane protein [Borrelia garinii
           Far04]
          Length = 390

 Score = 37.7 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 1/108 (0%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           LN  P       + L  +  EF+++++  L  + F  ++                  I I
Sbjct: 282 LNFKPYQDKSMKQNLALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISI 341

Query: 311 SLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            + + +  +F G      +   NP  + IL   +  I+   L +   K
Sbjct: 342 IICVFYWVMFIGGKVYTVQYAPNPIIVTILPNLILIIAGAILFLRLLK 389


>gi|257054218|ref|YP_003132050.1| hypothetical protein Svir_01350 [Saccharomonospora viridis DSM
           43017]
 gi|256584090|gb|ACU95223.1| hypothetical protein Svir_01350 [Saccharomonospora viridis DSM
           43017]
          Length = 498

 Score = 37.7 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/85 (11%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI---SFGVFWGFSYIIHKIEQN 332
           ++    P + GLI++ A       R+  +   +   + +   +   +  +  +       
Sbjct: 243 VSMAFAPAVVGLIALCALVGLWFARRWDRFPSVSALVGLGAGAVAYYLTYMVLGVGPYHW 302

Query: 333 PYYIPILYLFLFCISSIFLLMIKKK 357
            Y  P   L +F ++ + + ++  +
Sbjct: 303 YYVAPTTALGMFAVAILGVWLVWAR 327


>gi|15964004|ref|NP_384357.1| hypothetical protein SMc00331 [Sinorhizobium meliloti 1021]
 gi|15073180|emb|CAC41688.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
          Length = 335

 Score = 37.7 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 16/59 (27%)

Query: 272 FHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE 330
               + Q L      L+  V        R    +    +++          SY +  +E
Sbjct: 80  IFWLVAQPLSLAFLALVVGVLLMLGRFRRSGGTLSAFGLAVLFVTLFTTAGSYFLQILE 138


>gi|225351954|ref|ZP_03742977.1| hypothetical protein BIFPSEUDO_03559 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157201|gb|EEG70540.1| hypothetical protein BIFPSEUDO_03559 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 481

 Score = 37.7 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 28/77 (36%)

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
           L   +  +I +   +     R+   +  + + L++       F+  I    Q+   + +L
Sbjct: 21  LLAAVMFVIGLHLMNSPKTARKGNMVSAVGMILAVVMAFIVLFAGEISNGFQHGVAVVLL 80

Query: 340 YLFLFCISSIFLLMIKK 356
              +   +   ++  KK
Sbjct: 81  IAGIIIGAVAGVVSAKK 97


>gi|216263485|ref|ZP_03435480.1| conserved hypothetical integral membrane protein [Borrelia afzelii
           ACA-1]
 gi|215980329|gb|EEC21150.1| conserved hypothetical integral membrane protein [Borrelia afzelii
           ACA-1]
          Length = 390

 Score = 37.7 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 1/108 (0%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           LN  P       + L  +  EF+++++  L  + F  ++                  I I
Sbjct: 282 LNFKPYQNRSMNQNLALFNLEFYQKISLPLSVLFFIFLAFSMGLYSNKKYSIILELVISI 341

Query: 311 SLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            + + +  +F G      +   NP  + IL   +  I+   L +   K
Sbjct: 342 IICVFYWVMFIGGKVYTVQYAPNPIIVTILPNLILIIAGAILFLRLLK 389


>gi|219518083|gb|AAI43977.1| ATP7B protein [Homo sapiens]
          Length = 1417

 Score = 37.7 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 44/154 (28%), Gaps = 10/154 (6%)

Query: 209 HRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE-- 266
           H         + + + S  L T  A           +++  ++     + +         
Sbjct: 580 HNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLAQRNPNAH 639

Query: 267 --TYRSEF--HKR---LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
              ++ E    K+    +      +  L+  +        +     H I   LSI   +F
Sbjct: 640 HLDHKMEIKQWKKSFLCSLVFGIPVMALMIYMLIPSNEPHQSMVLDHNIIPGLSILNLIF 699

Query: 320 WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +     +   E++P         LF   ++   +
Sbjct: 700 FILCTFVQA-ERSPVTFFDTPPMLFVFIALGRWL 732


>gi|126334342|ref|XP_001377157.1| PREDICTED: similar to ABC-C transporter [Monodelphis domestica]
          Length = 1709

 Score = 37.7 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/220 (6%), Positives = 48/220 (21%), Gaps = 1/220 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      +      +F  S L  + +  +   +Q  +         +++         + 
Sbjct: 297 MGLSNWLLWSSYFITFFFSFLITICLLTLFFFMQVFDQPIIYHSDSSLVFIFLLCFALSS 356

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIID-NTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +             N+  +       +        S       +        +       
Sbjct: 357 MFFGFMISTFFNKANMAVATGGCIYFITYLPYLFISSRYNQMSLDQKLAACLLSNIAMTM 416

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I    R  IK +    +       ++++L       + +  +            +    
Sbjct: 417 GINMIVRFEIKGIGVHWERLTDTVSIDDDLNLGHILGMMLVDAFCYGLAGWYMEVVFPGE 476

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS 219
                  Y+    S        +    +    +  ++ + 
Sbjct: 477 YGIPQPWYFFLKRSYWYGYPKPLFRSHKDSEDNSQNQYME 516


>gi|221195096|ref|ZP_03568152.1| serine/threonine protein kinase [Atopobium rimae ATCC 49626]
 gi|221184999|gb|EEE17390.1| serine/threonine protein kinase [Atopobium rimae ATCC 49626]
          Length = 603

 Score = 37.3 bits (84), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH-KIEQN 332
            R + W+  +   L S  AA       + + +    + L +  G  +  SY+ +     +
Sbjct: 505 SRASFWIMCLGCALSSYAAALVSKKRSRIRMVFGQIVGLVLFLGTIFLASYVENKSFLPS 564

Query: 333 PYYIPILYLFLFCISSIFLLMI 354
             ++PI++    C+    ++++
Sbjct: 565 VNWVPIIFAVTLCVLVCIVIVL 586


>gi|138895124|ref|YP_001125577.1| sporulation kinase B [Geobacillus thermodenitrificans NG80-2]
 gi|196248295|ref|ZP_03146996.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
 gi|134266637|gb|ABO66832.1| Sporulation kinase B [Geobacillus thermodenitrificans NG80-2]
 gi|196212020|gb|EDY06778.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
          Length = 430

 Score = 37.3 bits (84), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 31/78 (39%)

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           LT  ++ ++F + +  +   R L R  K    ++++  I+    +    I       PY 
Sbjct: 108 LTFVVYAIMFVVAAAASPLFRRLPRSGKLFASLWLTFLIAILTTFVAVIIADFSVTKPYI 167

Query: 336 IPILYLFLFCISSIFLLM 353
           +  + +  F +     LM
Sbjct: 168 VYFIIMPPFVMMFAVYLM 185


>gi|289668601|ref|ZP_06489676.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 129

 Score = 37.3 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 55/127 (43%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + + + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPKRMLRPMLMLVVPVVVVIGLCSLW 120

Query: 121 IEPKCRS 127
           + P  R 
Sbjct: 121 LGPWARR 127


>gi|291302700|ref|YP_003513978.1| glycosyl transferase family 39 [Stackebrandtia nassauensis DSM
           44728]
 gi|290571920|gb|ADD44885.1| glycosyl transferase family 39 [Stackebrandtia nassauensis DSM
           44728]
          Length = 747

 Score = 37.3 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 272 FHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
           FH+  T  L P I   + I A       R+R     + +++ ++    W F  +    + 
Sbjct: 410 FHEYYTIALAPYIAATVGIGAVILWR--RRRFPAVAVTLAVVLAVTAMWAFVLLGRSSDW 467

Query: 332 NPYYIPILYLFLFCISSIFLLMIKKKYTK 360
            P+      +    + +   L+  ++  K
Sbjct: 468 LPWLR--WTVLTVGLVAAVGLVFARRLPK 494


>gi|296135727|ref|YP_003642969.1| ferrous iron transport protein B [Thiomonas intermedia K12]
 gi|295795849|gb|ADG30639.1| ferrous iron transport protein B [Thiomonas intermedia K12]
          Length = 783

 Score = 37.3 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 33/75 (44%)

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
              ++F L+ +  A     +R+      +  S+    G+ W  + +I++I     + P  
Sbjct: 686 FAYLVFVLLYVPCASTMGALRREVGWGWMVFSVLYGIGIAWAAATVIYQIGTFAQHPPSS 745

Query: 340 YLFLFCISSIFLLMI 354
            L++    + F+L++
Sbjct: 746 ALWVAACVAAFVLLV 760


>gi|91215794|ref|ZP_01252764.1| hypothetical protein P700755_02717 [Psychroflexus torquis ATCC
           700755]
 gi|91186260|gb|EAS72633.1| hypothetical protein P700755_02717 [Psychroflexus torquis ATCC
           700755]
          Length = 708

 Score = 37.3 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/167 (7%), Positives = 42/167 (25%), Gaps = 8/167 (4%)

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           +   P  ++         +    +    +             I +               
Sbjct: 204 HYSSPVKKNFNTIYFDYREKRDHYYSQLKKNLNTNLKTRLGIIEELKSMIGSGESMTSSF 263

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +  +  +  +  +GS+  +    + N+   H +          +F+    +        I
Sbjct: 264 KQFKELQERWKNAGSVPRNDYNTVWNNYHHHIERFYDFLHLDREFRDMDFKYNLDQKLKI 323

Query: 239 VLKAND--------QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
           + +A +        ++   L   +         +   YR E   + +
Sbjct: 324 INRAEELSQEEDVNRSFRELQLLHKMWKEELGPVAREYRDEIWDKFS 370


>gi|302753656|ref|XP_002960252.1| hypothetical protein SELMODRAFT_75462 [Selaginella moellendorffii]
 gi|300171191|gb|EFJ37791.1| hypothetical protein SELMODRAFT_75462 [Selaginella moellendorffii]
          Length = 1157

 Score = 37.3 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 54/215 (25%), Gaps = 8/215 (3%)

Query: 148 NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGE 207
                        I+++     L  +    S       I YA   +I        +    
Sbjct: 780 RQVMTAVYASNYAIAQFRYLARLLLVHGRWSYKRNRDSIMYAFYKNIVYVAGNCYIAFYS 839

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
            +   P+     I  +  +     +   + +     +  +  L NP   +   +    + 
Sbjct: 840 GYSGQPLYNIFLISTYNLFWTSLPTIAYAILNKDICETTI--LNNPQLYHETQKDRTWKF 897

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
           +RS     +      +I               R+    +    S S++  +         
Sbjct: 898 FRSFCLWFIAALWHSLIVFFYPSSGIPLGRKGRRGGLANIGTTSYSMAVFIVNIKLATRM 957

Query: 328 KIE---QNPYYIPI-LYLFLFCISSIFLLMIKKKY 358
                  +     + + L+L     +      +++
Sbjct: 958 NFFPWVSHAVLWGVSIGLWLLFAFVLSFFW--RRW 990


>gi|302768084|ref|XP_002967462.1| hypothetical protein SELMODRAFT_86830 [Selaginella moellendorffii]
 gi|300165453|gb|EFJ32061.1| hypothetical protein SELMODRAFT_86830 [Selaginella moellendorffii]
          Length = 1157

 Score = 37.3 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 54/215 (25%), Gaps = 8/215 (3%)

Query: 148 NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGE 207
                        I+++     L  +    S       I YA   +I        +    
Sbjct: 780 RQVMTAVYASNYAIAQFRYLARLLLVHGRWSYKRNRDSIMYAFYKNIVYVAGNCYIAFYS 839

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
            +   P+     I  +  +     +   + +     +  +  L NP   +   +    + 
Sbjct: 840 GYSGQPLYNIFLISTYNLFWTSLPTIAYAILNKDICETTI--LNNPQLYHETQKDRTWKF 897

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
           +RS     +      +I               R+    +    S S++  +         
Sbjct: 898 FRSFCLWFIAALWHSLIVFFYPSSGIPLGRKGRRGGLANIGTTSYSMAVFIVNIKLATRM 957

Query: 328 KIE---QNPYYIPI-LYLFLFCISSIFLLMIKKKY 358
                  +     + + L+L     +      +++
Sbjct: 958 NFFPWVSHAVLWGVSIGLWLLFAFVLSFFW--RRW 990


>gi|292493519|ref|YP_003528958.1| CHASE2 domain protein [Nitrosococcus halophilus Nc4]
 gi|291582114|gb|ADE16571.1| CHASE2 domain protein [Nitrosococcus halophilus Nc4]
          Length = 763

 Score = 37.3 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/101 (10%), Positives = 29/101 (28%), Gaps = 21/101 (20%)

Query: 278 QWLFP--VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS-YIIHKIEQNPY 334
             LF   ++  L  +        +        I  +++++ G         + +    P 
Sbjct: 374 LPLFLHYLVIVLWGVAIGFLFLFL---NAYALIPTAVALAVGYMSVAYHLFVSEGLWLPL 430

Query: 335 YIPILYLFLFCISSIFLL---------------MIKKKYTK 360
            IP+L+   F +    L                   +++ +
Sbjct: 431 VIPLLWQLPFGLLGALLWRYLTIGKAIRPYLPDWFWRRWNR 471


>gi|296114390|ref|ZP_06833044.1| ribonuclease BN [Gluconacetobacter hansenii ATCC 23769]
 gi|295979151|gb|EFG85875.1| ribonuclease BN [Gluconacetobacter hansenii ATCC 23769]
          Length = 397

 Score = 37.3 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/89 (11%), Positives = 22/89 (24%)

Query: 270 SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
            E   R+      ++F L       +    R+      I      +  ++   S+     
Sbjct: 255 LELLVRMGGPALMLLFVLSGCSLLYRFGPNRRSPSWRCILPGSVAATLLWLLTSFGFSYY 314

Query: 330 EQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +       Y  L    +  +      Y
Sbjct: 315 VSHIAGYGATYGPLGAFVATMMWFYVSAY 343


>gi|297559851|ref|YP_003678825.1| type II secretory pathway prepilin signal peptidase PulO and
           related peptidase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844299|gb|ADH66319.1| Type II secretory pathway prepilin signal peptidase PulO and
           related peptidase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 324

 Score = 37.3 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/105 (10%), Positives = 27/105 (25%), Gaps = 21/105 (20%)

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF------------- 322
           +    +PV   LI +             +     +S+ +   ++W               
Sbjct: 193 VVLPAYPVAAVLIGLA-VLLPPEGPDTDRAAGALVSMVLVTVLYWLLWRVHSAGLGFGDV 251

Query: 323 -------SYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                   Y           + + + F        +LM  ++ T+
Sbjct: 252 KLSGLTALYAGWAAGTLGALVAVFWAFAAFSLVGVVLMALRRLTR 296


>gi|304314700|ref|YP_003849847.1| sensory transduction regulatory protein [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588159|gb|ADL58534.1| predicted sensory transduction regulatory protein
           [Methanothermobacter marburgensis str. Marburg]
          Length = 707

 Score = 37.3 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 16/107 (14%)

Query: 270 SEFHKRLTQWLFPVIFGLISI------VAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
              H+RL    +      I        V     A    R +   I   +S         S
Sbjct: 590 IALHRRLDAIFYLFSMIFIGFVMLGYIVFILNLAGFGFRMEAPFIIGLISTVAFFPLTMS 649

Query: 324 YIIHKIEQNP--------YYIPILYLFLFCISSIFLLMIK--KKYTK 360
            I       P        Y+   LYL    +++   ++ +  +++ K
Sbjct: 650 GIRMDGYSIPRTILLSIEYWAYCLYLIPLFVAATVHMLRRRERRWAK 696


>gi|195035128|ref|XP_001989046.1| GH10257 [Drosophila grimshawi]
 gi|193905046|gb|EDW03913.1| GH10257 [Drosophila grimshawi]
          Length = 1359

 Score = 37.3 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 35/367 (9%), Positives = 94/367 (25%), Gaps = 22/367 (5%)

Query: 5   ELYILRCIGRSFLMSCL-----FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           + +I+  +  S   + L         + ++ Q++     V S    + + L  +   +P 
Sbjct: 485 DHHIIVEVLISSWYALLANTDLICYIVVFINQVVN--ASVISLPLPIMVFLWGT-LSLPR 541

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                 P      T    T      + +       +    +         +      +  
Sbjct: 542 ------PTKTFWVTLIAYTQAIVLIKCIFQFKLIWANYQNLAHQPLRPAKIFGVEMKTHY 595

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            +       +  L      +            +        I     ++ +         
Sbjct: 596 AVYDLILLLVLFLHRYLLKSQGLWKSGYKDTDQQFAKPTTSIDDREDSDNMSQPDSRQLN 655

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           +    K     S            +      ++  +  +    F        + +   ++
Sbjct: 656 EDAAQKQSLQVSQVSLPGSPEYSKSAINQLERTKYTSSLHKFFFSLVHKSRLATDVYALM 715

Query: 240 LKANDQNLSFLLNPNPNNPNYRPEL---LETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              +  N   LL         + E    ++TY +E   ++      ++     ++  D+ 
Sbjct: 716 FLCDFINFFVLLFGFTAFGTQQTESDGGVQTYLAE--NKVPVPFLIMLLVQFLLIVIDRA 773

Query: 297 ALVRQ---RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             +R+    K     F  + I   +F+    +  +   +     I Y+       +    
Sbjct: 774 LYLRKALVNKIFFHFFSVIGIHIWMFFVVPAVTERSFNSLAPPIIFYVIKCFYMLLSSYQ 833

Query: 354 IKKKYTK 360
           IK  Y K
Sbjct: 834 IKSGYPK 840


>gi|268536348|ref|XP_002633309.1| Hypothetical protein CBG06044 [Caenorhabditis briggsae]
          Length = 1694

 Score = 37.3 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/278 (7%), Positives = 73/278 (26%), Gaps = 23/278 (8%)

Query: 7    YILRC--IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
            Y +R     ++     +    + W ++++  ++++    + L   + I   +IP+++   
Sbjct: 1179 YFIRLSPTTKTLGRILIICNSVIWSLKLVDYLSVL----QGLGPYINIVAEMIPSMI--- 1231

Query: 65   TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
             P C  +  T     + R +     ++     +  I    +  +   ++    +   +  
Sbjct: 1232 -PLCVLVFITLYSFGLLRQSITYPYEDWHWILVRNIFLQPYFMLYGEVYAAEIDTCGDEI 1290

Query: 125  CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ----GIFIVDSRD 180
              +   +    + L +T        +          ++       +             +
Sbjct: 1291 WHTHEDENIPISMLNVTHETCVPGYWIAPVGLTVFMLATNVLLMNVMVAGCTYIFEKHIE 1350

Query: 181  TQTHKIYYAQSGSIDLDRQAIILND---------GEVHRKSPISKDISIMKFKSYTLQTE 231
            +      + + G +        L                    S+          +L+  
Sbjct: 1351 STREIFLFERYGQVMEYESTPWLPPPFTIIYHIIWVFKLIKYSSRMFERKNLFDQSLKLF 1410

Query: 232  SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR 269
             +      +   ++     +       N        +R
Sbjct: 1411 LSPDEMEKVHTFEEESVEDMKRETEKKNLSSNDERIHR 1448


>gi|296506485|ref|YP_003667719.1| hypothetical protein BMB171_P0104 [Bacillus thuringiensis BMB171]
 gi|296327072|gb|ADH09999.1| hypothetical protein BMB171_P0104 [Bacillus thuringiensis BMB171]
          Length = 821

 Score = 37.3 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRK-KIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           +   L   +  L+++V A      R        + + ++I F +   F            
Sbjct: 336 IIVALMSPVMLLMALVPAWTGTAKRFLAELFRTLLMKVAIGFLITLMFWVSSILFSATDK 395

Query: 335 YIPILYLFLFCISSIFLLMIKK 356
           Y  ++   L  +S + + + +K
Sbjct: 396 YGYLVVAALQVLSFLGVWLYRK 417


>gi|261339774|ref|ZP_05967632.1| quinate/shikimate dehydrogenase [Enterobacter cancerogenus ATCC
           35316]
 gi|288318607|gb|EFC57545.1| quinate/shikimate dehydrogenase [Enterobacter cancerogenus ATCC
           35316]
          Length = 794

 Score = 37.3 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 3/71 (4%)

Query: 275 RLTQWLFPVIFGLISIV---AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
           R+ QWL   +  LI +       K A V        + I + I+  + +    I   +  
Sbjct: 12  RILQWLLAGLMVLIGLAVGGLGLKLATVGGSWYFLIMGIVMVIAAILIFTNRTIGIVLYA 71

Query: 332 NPYYIPILYLF 342
             +   + +  
Sbjct: 72  LAFIASLFWAV 82


>gi|224533436|ref|ZP_03674029.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi CA-11.2a]
 gi|224513398|gb|EEF83756.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi CA-11.2a]
          Length = 390

 Score = 37.3 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 2/110 (1%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           LN  P       + L  +  EF+++++  L  + F  ++          R+   I  + I
Sbjct: 282 LNFKPYQDRSMKQNLALFNLEFYQKISLPLSVLFFIFLAFSMGMYS--NRKYSIILELVI 339

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           S+ +    +  F        Q      I+ +    I  I   ++  +  K
Sbjct: 340 SIIVCVFYWVMFIGGKVYTVQYAPSPIIVTILPNLILIIAGAILFLRLLK 389


>gi|328946678|gb|EGG40816.1| hypothetical protein HMPREF9397_0201 [Streptococcus sanguinis
          SK1087]
          Length = 689

 Score = 37.3 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 1  MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISG 54
          M+    Y+++   +SFL      +F+ +   +     L  S+  S   + + + 
Sbjct: 1  MEIIMKYLMKKYVKSFLFGL-TFIFVLFSSAVYAVTELTESTNLSTLDIYQFTL 53


>gi|325687336|gb|EGD29358.1| hypothetical protein HMPREF9381_1485 [Streptococcus sanguinis
          SK72]
          Length = 689

 Score = 37.3 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 1  MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISG 54
          M+    Y+++   +SFL      +F+ +   +     L  S+  S   + + + 
Sbjct: 1  MEIIMKYLMKKYVKSFLFGL-TFIFVLFSSAVYAVTELTESTNLSTLDIYQFTL 53


>gi|290979746|ref|XP_002672594.1| B-lectin domain-containing protein [Naegleria gruberi]
 gi|284086172|gb|EFC39850.1| B-lectin domain-containing protein [Naegleria gruberi]
          Length = 2047

 Score = 37.3 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 32/335 (9%), Positives = 87/335 (25%), Gaps = 18/335 (5%)

Query: 13   GRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAME 72
                + +   +V +  +    ++   VSS   +    + +   ++   L  +      ++
Sbjct: 1535 IIYLIAASAILVGLIVL----RKSQPVSSRLLTP--YVGLIALIVECTLIYIVQRSVLVD 1588

Query: 73   TTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQL 132
              N   +          +      + ++  +   AI   +        ++   +      
Sbjct: 1589 QLNSANTQMWENGDTAANIIANIVMIIVNTLNLTAIFCYVMQVFRFQFMKLLYKKLSDNR 1648

Query: 133  SAKAQLALTFSYLEENLFFRLDDDL---------YIKISKYNPNNTLQGIFIVDSRDTQT 183
            +      +                +         Y  I        +          + +
Sbjct: 1649 TQAQSATVLKVLKYTTSQILFYSLIGIFTALNIAYWVIWVILRRTGVLTSTQYTYVVSLS 1708

Query: 184  HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            + +     G I      + +                 + F   T      N+  +  K  
Sbjct: 1709 YTVCILAFGLIITAVAILDMILSSKKEVEQKKNRRKAINFSQPTSNFSLDNAENVHEKKK 1768

Query: 244  DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
               ++  +  N  N     +    +R E    +  ++  ++  +I + +   R       
Sbjct: 1769 ---INRNVFLNAFNWFTSMDGPLYFRMEMFIYIVSFILLILNQVIGLSSLAYRFESLTMF 1825

Query: 304  KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
            K+   F S+S  F V +  SYI+           I
Sbjct: 1826 KLALTFDSISFIFEVLYVVSYILVFGGYALIVAII 1860


>gi|308492528|ref|XP_003108454.1| hypothetical protein CRE_11023 [Caenorhabditis remanei]
 gi|308248194|gb|EFO92146.1| hypothetical protein CRE_11023 [Caenorhabditis remanei]
          Length = 684

 Score = 37.3 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/171 (5%), Positives = 43/171 (25%), Gaps = 2/171 (1%)

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  +   +KA                      ++++     +     F+       
Sbjct: 191 QIINVKRRGRPSKADKRSPVDQFINLTPQSAQFQKLLEVNGTASTSFTAVSFLESDAPDD 250

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                   +  I++ ++   L   +    +  + ++    F   + +     + ++ ++ 
Sbjct: 251 LGFTPAMYNALIEMIQETPQL--WQNDNPNRKNGELRDKNFDDISRKLILKFNGSLDIQQ 308

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +++     +         + +  E        R    L  +   L+     
Sbjct: 309 SERMTGSFIRKIWETLKEKFQREEKLDKISQWRYYLPLQFLSNRLMPAFLL 359


>gi|296226658|ref|XP_002759024.1| PREDICTED: solute carrier organic anion transporter family member
           5A1 isoform 2 [Callithrix jacchus]
          Length = 793

 Score = 36.9 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 34/128 (26%), Gaps = 3/128 (2%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQ---ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
                FL+    + FI    Q   I+  +  V        + ++         +P    F
Sbjct: 591 NTLIPFLVFLFIVTFITACAQPSAIIVTLRSVEDEERPFALGMQFVLLRTLAYIPTPIYF 650

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              ++TT +L       +    +   TS   +   +      +                 
Sbjct: 651 GAVIDTTCMLWQQECGVQGSCWEYNVTSFRFVYFGLAAGLKFVGFIFIFLAWYSIKYKED 710

Query: 128 TIKQLSAK 135
            +++   +
Sbjct: 711 GLQRRRWR 718


>gi|149411150|ref|XP_001510737.1| PREDICTED: similar to solute carrier organic anion transporter
           family, member 5A1, partial [Ornithorhynchus anatinus]
          Length = 290

 Score = 36.9 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 28/113 (24%), Gaps = 3/113 (2%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQ---ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
                FL+    + FI    Q   I+  +  V        + ++         +P    F
Sbjct: 105 NTLIPFLVFLFIVTFITACAQPSAIIVTLRSVEDGERPFALGMQFVLLRTLAYIPTPIYF 164

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              ++TT +L            +   TS   +   +                 
Sbjct: 165 GAVIDTTCMLWQQECGVRGSCWEYDVTSFRFVYFGLAAGLKCFGFVFIFLAWY 217


>gi|332367302|gb|EGJ45037.1| hypothetical protein HMPREF9396_0181 [Streptococcus sanguinis
          SK1059]
          Length = 689

 Score = 36.9 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 1  MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISG 54
          M+    Y+++   +SFL      +F+ +   +     L  S+  S   + + + 
Sbjct: 1  MEIIMKYLMKKYVKSFLFGL-TFIFVLFSSAVYAVTELTESTNLSTLDIYQFTL 53


>gi|320107799|ref|YP_004183389.1| WD40-like beta Propeller containing protein [Terriglobus saanensis
           SP1PR4]
 gi|319926320|gb|ADV83395.1| WD40-like beta Propeller containing protein [Terriglobus saanensis
           SP1PR4]
          Length = 677

 Score = 36.9 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 91/339 (26%), Gaps = 20/339 (5%)

Query: 34  QRINLVSSSTESLNILLKISGYL--IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           + I LVS +  S      ++G        + ++    F +    +L S+       +   
Sbjct: 52  RVIGLVSVTPFSTLAAWPLTGLTPLTAKHIWILLNLAFLIPIGWILRSITGLGSRRVALI 111

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
              S       +     +L + L         +   ++               L   +FF
Sbjct: 112 LFLSFPLHRNLLYGQFYVLLLLLISGACFCYLRRHRSLAGGLLAVAAVCKVFPLILFIFF 171

Query: 152 RLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK 211
               D    I+      +   + I              Q   I           G     
Sbjct: 172 LQRRDWRALIAGVTTGISAVVVSIAAFGLNAHRNWLQEQLPWIMRGDW-----LGAYASS 226

Query: 212 SPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRS 270
           + IS  +  +            ++S +        L  L L P         E  E    
Sbjct: 227 ASISGVLHRLFLSEPQWNPHPWHNSPLCYALLAPTLQMLALAPAILLIRRDDESKERVLL 286

Query: 271 EFHKRLTQWL--------FPVIFGL--ISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
           E+   LT  L        +  +  +  + ++AA      R       +F  L I F V  
Sbjct: 287 EWSALLTASLTISTIPASYTFVLMVFPVCVLAAILLRQRRYGWLAALVFAYLGIGFPVSA 346

Query: 321 GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
               +          +P++   LF   +  L+  +++ +
Sbjct: 347 PSRPLGLVFLLYVPRLPLMMAVLFGTYA--LMWNRRRES 383


>gi|310821064|ref|YP_003953422.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394136|gb|ADO71595.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 748

 Score = 36.9 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 30/86 (34%)

Query: 273 HKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
             RLT  ++ +   LIS+     R   +Q +        L+I  GV    S +       
Sbjct: 124 WARLTLSVWVLGALLISVSLLFLRVRNQQSRIERLRLTYLAIGAGVSILLSLLDLVSGHY 183

Query: 333 PYYIPILYLFLFCISSIFLLMIKKKY 358
              +P L      +  +FL    ++ 
Sbjct: 184 DIPLPSLGAVFTTLYLVFLYQTLRRL 209


>gi|125718440|ref|YP_001035573.1| hypothetical protein SSA_1635 [Streptococcus sanguinis SK36]
 gi|125498357|gb|ABN45023.1| Hypothetical protein SSA_1635 [Streptococcus sanguinis SK36]
          Length = 689

 Score = 36.9 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 1  MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISG 54
          M+    Y+++   +SFL      +F+ +   +     L  S+  S   + + + 
Sbjct: 1  MEIIMKYLMKKYVKSFLFGL-TFIFVLFSSAVYAVTELTESTNLSTLDIYQFTL 53


>gi|259417188|ref|ZP_05741107.1| adenylate cyclase protein [Silicibacter sp. TrichCH4B]
 gi|259346094|gb|EEW57908.1| adenylate cyclase protein [Silicibacter sp. TrichCH4B]
          Length = 327

 Score = 36.9 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 6/72 (8%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
            ++++          +       F+ + +   V  GF ++++          +   +   
Sbjct: 256 PMLALAMVIGLRDGHRILGRSE-FLGIPVKLCVIAGFLFLVNLFSWEGALWSL---WPIG 311

Query: 346 ISSIFLLMIKKK 357
             ++F L  +++
Sbjct: 312 GIAVFSLFKRRR 323


>gi|229100019|ref|ZP_04230939.1| hypothetical protein bcere0020_52340 [Bacillus cereus Rock3-29]
 gi|228683447|gb|EEL37405.1| hypothetical protein bcere0020_52340 [Bacillus cereus Rock3-29]
          Length = 794

 Score = 36.9 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRK-KIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           +   L   +  L+++V A      R        + + ++I F V   F            
Sbjct: 323 IIVALMSPVMLLMALVPAWTGTAKRFLAELFRTLLMKVAIGFLVTLMFWVSSILFSATDK 382

Query: 335 YIPILYLFLFCISSIFLLMIKK 356
           Y  ++   L  +S + + + +K
Sbjct: 383 YGYLVVAALQVLSFLGVWLYRK 404


>gi|254456791|ref|ZP_05070219.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
 gi|207085583|gb|EDZ62867.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
          Length = 605

 Score = 36.9 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 273 HKRLTQWLFPVIFGLISIVAADKR--------ALVRQRKKIHPIFISLSISFGVFWGF-S 323
           + R+ Q +  +    I+I               +VR+ K    + + + + F V  GF  
Sbjct: 30  YFRIIQAVHVLSSAFIAIFLLLPYVNLHTYEYMIVRRAKSTSGVILGILLFFIVASGFYL 89

Query: 324 YIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTKI 361
           + +     +   +   Y+ LF    +   +      KI
Sbjct: 90  FFVGNPGGDAIGLVSYYIHLFGSFVLLYFLFLHARKKI 127


>gi|47565357|ref|ZP_00236399.1| hypothetical protein BCE_G9241_pBC218_0120 [Bacillus cereus G9241]
 gi|208742262|ref|YP_002267714.1| hypothetical protein pBC210_00760 [Bacillus cereus]
 gi|47557711|gb|EAL16037.1| membrane protein, putative [Bacillus cereus G9241]
          Length = 781

 Score = 36.9 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRK-KIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           +   L   +  L+++V A      R        + + ++I F V   F            
Sbjct: 336 IIVALMSPVMLLMALVPAWTGTAKRFLAELFRTLLMKVAIGFLVTLMFWVSSILFSATDK 395

Query: 335 YIPILYLFLFCISSIFLLMIKK 356
           Y  ++   L  +S + + + +K
Sbjct: 396 YGYLVVAALQVLSFLGVWLYRK 417


>gi|255566630|ref|XP_002524299.1| Cellulose synthase A catalytic subunit 6 [UDP-forming], putative
            [Ricinus communis]
 gi|223536390|gb|EEF38039.1| Cellulose synthase A catalytic subunit 6 [UDP-forming], putative
            [Ricinus communis]
          Length = 1095

 Score = 36.9 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 261  RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
              E  E Y  ++   L   L  +   +I IV     A+        P F  L  +  V  
Sbjct: 979  DGEFSELYLFKWTSLLIPPLTLLFINIIGIVVGVANAINNGYDSWGPFFGRLFFAGWVIL 1038

Query: 321  GFS-YIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                ++   + +      I+ ++   ++SI  L+  +
Sbjct: 1039 HLYPFLKGFLGKQDRLPTIILVWSILLASICSLLWVR 1075


>gi|326470922|gb|EGD94931.1| peptidase M28 [Trichophyton tonsurans CBS 112818]
          Length = 962

 Score = 36.9 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 34/358 (9%), Positives = 93/358 (25%), Gaps = 27/358 (7%)

Query: 18  MSCLFIVFIAWVIQILQRINLVSSSTESLNILL-----KISGYLIPTVLPMVTPFCFAME 72
           ++ L +  +  +I  +    +      S+   +     ++S Y +  +     P    + 
Sbjct: 391 VALLVVSPLLLIITSVALFAVDKMYMFSMYTYISESGGQVSLYGLRGMFR--FPLILGIS 448

Query: 73  TTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQL 132
           T   +       ++       +        +            +++              
Sbjct: 449 TALTIALAFLIMKVNPFIIYSSPYAVWSMMLSTCMFFAWFISCVADFARPSALHRAYAFS 508

Query: 133 SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSG 192
                + +                 Y  +  +        I  ++       + Y  + G
Sbjct: 509 WMFGIMWVFLVIATVYQKQHGIASSYFIVFYFAGVAVATWISYLELFGLPKTQDYARRQG 568

Query: 193 SI-DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLL 251
            + D    +          + P S   +   F    ++ E    ST +L+   +      
Sbjct: 569 RLSDRTPSSDSHFLAPSADELPSSSSAAGRDFNPEDVEDEEPTESTSLLRGQQRTTFANY 628

Query: 252 -----NPNPNNPNYRPELLETYRSEFHKRLTQWLF------------PVIFGLISIVAAD 294
                +   N  N     L        ++ + +L             P++  L+  +   
Sbjct: 629 ASARGSQESNISNQGSSSLHPKDHRLEQKWSIYLMSSAWILQFLLVAPIVIILLGQLGLF 688

Query: 295 KRALVRQRK--KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             +   Q        + I + I+         +   I +  Y+IP   LF+   + ++
Sbjct: 689 LTSATYQIGADGGSQLVIYIGIAVLSVLILLPLFPFIHRFTYHIPTFLLFILIGTLVY 746


>gi|145221724|ref|YP_001132402.1| hypothetical protein Mflv_1132 [Mycobacterium gilvum PYR-GCK]
 gi|315446540|ref|YP_004079419.1| hypothetical protein Mspyr1_50550 [Mycobacterium sp. Spyr1]
 gi|145214210|gb|ABP43614.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
 gi|315264843|gb|ADU01585.1| hypothetical protein Mspyr1_50550 [Mycobacterium sp. Spyr1]
          Length = 376

 Score = 36.9 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 24/76 (31%)

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
               L  V+  L  + AA  R   R R+       ++ I   V     +++  +  +   
Sbjct: 146 WLLPLLYVLVALSLVAAAGLRHSNRTRRGRALFVFTIGIVLIVLALAFFLLRAVGTSGLV 205

Query: 336 IPILYLFLFCISSIFL 351
                  L   + + +
Sbjct: 206 GVGAAATLLGCAMLIV 221


>gi|116668959|ref|YP_829892.1| hypothetical protein Arth_0391 [Arthrobacter sp. FB24]
 gi|116609068|gb|ABK01792.1| protein of unknown function DUF6, transmembrane [Arthrobacter sp.
           FB24]
          Length = 331

 Score = 36.9 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 31/80 (38%)

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
             +   ++ +V   K  ++ + ++  PI     + FG +         +        ++ 
Sbjct: 85  LAIAAVVLGLVVLPKLRILPKGREWWPILAYGVMWFGGYNVALNAAEHLLDAGTAALLIN 144

Query: 341 LFLFCISSIFLLMIKKKYTK 360
           +    ++ +  L++K+ + +
Sbjct: 145 VNPILVAVMAGLLLKEGFPR 164


>gi|71982042|ref|NP_502111.3| Gon-Two Like (TRP subfamily) family member (gtl-1) [Caenorhabditis
            elegans]
 gi|30145746|emb|CAA92726.2| C. elegans protein C05C12.3, confirmed by transcript evidence
            [Caenorhabditis elegans]
 gi|52082722|gb|AAU25950.1| GTL-1 [Caenorhabditis elegans]
          Length = 1694

 Score = 36.9 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 21/278 (7%), Positives = 72/278 (25%), Gaps = 23/278 (8%)

Query: 7    YILRC--IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
            Y +R     ++     +    + W ++++  +++     + L   + I   +IPT++   
Sbjct: 1168 YFIRLSPTTKTLGRILIICNSVIWSLKLVDYLSV----QQGLGPYINIVAEMIPTMI--- 1220

Query: 65   TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
             P C  +  T     + R +     ++     +  I    +  +   ++    +   +  
Sbjct: 1221 -PLCVLVFITLYAFGLLRQSITYPYEDWHWILVRNIFLQPYFMLYGEVYAAEIDTCGDEI 1279

Query: 125  CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ----GIFIVDSRD 180
             ++   +    + L +T        +          ++       +              
Sbjct: 1280 WQTHEDENIPISMLNVTHETCVPGYWIAPVGLTVFMLATNVLLMNVMVAGCTYIFEKHIQ 1339

Query: 181  TQTHKIYYAQSGSIDLDRQAIILND---------GEVHRKSPISKDISIMKFKSYTLQTE 231
            +      + + G +        L                    S+          +L+  
Sbjct: 1340 STREIFLFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKNLFDQSLKLF 1399

Query: 232  SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR 269
             +      +   ++     +       N        +R
Sbjct: 1400 LSPDEMEKVHTFEEESVEDMKRETEKKNLSSNDERIHR 1437


>gi|308491256|ref|XP_003107819.1| CRE-GTL-1 protein [Caenorhabditis remanei]
 gi|308249766|gb|EFO93718.1| CRE-GTL-1 protein [Caenorhabditis remanei]
          Length = 1717

 Score = 36.9 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/278 (7%), Positives = 74/278 (26%), Gaps = 23/278 (8%)

Query: 7    YILRC--IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
            Y +R     ++     +    + W ++++  ++++    + L   + I   +IP+++   
Sbjct: 1180 YFIRLSPTTKTLGRILIICNSVIWSLKLVDYLSVL----QGLGPYINIVAEMIPSMI--- 1232

Query: 65   TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
             P C  +  T     + R +     ++     +  I    +  +   ++    +   +  
Sbjct: 1233 -PLCVLVFITLYSFGLLRQSITYPYEDWHWILVRNIFLQPYFMLYGEVYAAEIDTCGDEI 1291

Query: 125  CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ----GIFIVDSRD 180
              +   +    + L +T        +          ++       +             +
Sbjct: 1292 WHTHEDENIPISMLNVTHETCVPGYWIAPVGLTVFMLATNVLLMNVMVAGCTYIFEKHIE 1351

Query: 181  TQTHKIYYAQSGSIDLDRQAIILND---------GEVHRKSPISKDISIMKFKSYTLQTE 231
            +      + + G +        L             +      S+          +L+  
Sbjct: 1352 STREIFLFERYGQVMEYESTPWLPPPFTIIYHIIWVIKLIRYSSRMFERKNLFDQSLKLF 1411

Query: 232  SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR 269
             +      +   ++     +       N        +R
Sbjct: 1412 LSPDEMEKVHTFEEESVEDMKRETEKKNLSSNDERIHR 1449


>gi|294339891|emb|CAZ88254.1| Fe2+ transport system protein FeoB [Thiomonas sp. 3As]
          Length = 763

 Score = 36.9 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 33/75 (44%)

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
              ++F L+ +  A     +R+      +  S+    G+ W  + +I++I     + P  
Sbjct: 666 FAYLVFVLLYVPCASTMGALRREVGWGWMVFSVLYGIGIAWAAATVIYQIGTFAQHPPSS 725

Query: 340 YLFLFCISSIFLLMI 354
            L++    + F+L++
Sbjct: 726 ALWVAACVAAFVLLV 740


>gi|24412718|emb|CAC81667.1| putative TRP homologous cation channel [Caenorhabditis elegans]
          Length = 1681

 Score = 36.9 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 21/278 (7%), Positives = 72/278 (25%), Gaps = 23/278 (8%)

Query: 7    YILRC--IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
            Y +R     ++     +    + W ++++  +++     + L   + I   +IPT++   
Sbjct: 1155 YFIRLSPTTKTLGRILIICNSVIWSLKLVDYLSV----QQGLGPYINIVAEMIPTMI--- 1207

Query: 65   TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
             P C  +  T     + R +     ++     +  I    +  +   ++    +   +  
Sbjct: 1208 -PLCVLVFITLYAFGLLRQSITYPYEDWHWILVRNIFLQPYFMLYGEVYAAEIDTCGDEI 1266

Query: 125  CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ----GIFIVDSRD 180
             ++   +    + L +T        +          ++       +              
Sbjct: 1267 WQTHEDENIPISMLNVTHETCVPGYWIAPVGLTVFMLATNVLLMNVMVAGCTYIFEKHIQ 1326

Query: 181  TQTHKIYYAQSGSIDLDRQAIILND---------GEVHRKSPISKDISIMKFKSYTLQTE 231
            +      + + G +        L                    S+          +L+  
Sbjct: 1327 STREIFLFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKNLFDQSLKLF 1386

Query: 232  SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR 269
             +      +   ++     +       N        +R
Sbjct: 1387 LSPDEMEKVHTFEEESVEDMKRETEKKNLSSNDERIHR 1424


>gi|146344011|ref|YP_001201867.1| putative transmembrane thiol:disulfide interchange protein DsbD
           precursor [Pseudomonas fluorescens SBW25]
 gi|146187823|emb|CAM96151.1| putative transmembrane thiol:disulfide interchange protein DsbD
           precursor [Pseudomonas fluorescens SBW25]
          Length = 598

 Score = 36.9 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 1/85 (1%)

Query: 269 RSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS-LSISFGVFWGFSYIIH 327
             E  K         +  L++ V        R+   I   F + ++  F V      I  
Sbjct: 192 YVEGLKLFLTPGVLPVIPLLAFVLLLGELSARRGITIGLAFTAPMAAGFVVLNSAIAITE 251

Query: 328 KIEQNPYYIPILYLFLFCISSIFLL 352
              +       +++ +  +  +  L
Sbjct: 252 AGIEIQPIAQSVWILVPSVLILLGL 276


>gi|304397300|ref|ZP_07379179.1| type VI secretion protein IcmF [Pantoea sp. aB]
 gi|304355449|gb|EFM19817.1| type VI secretion protein IcmF [Pantoea sp. aB]
          Length = 1209

 Score = 36.9 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 72/308 (23%), Gaps = 18/308 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNI--LLKISGYLIP 58
           +      +   +   F+     + FI WVI  +   ++V S         ++ I+   + 
Sbjct: 2   LNILFAVLTSRLAWGFVGITA-LSFIIWVIGPV--FSIVDSRPLEPEQNRMISIALLYLV 58

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             L    P         +         +  ++   +      +  L     +    F   
Sbjct: 59  WGLGQAIP--------RLYNYWLNRKLMSSLETGKSDAPEADRQRLTSEEQVLAGRFSEA 110

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVD 177
             +  K              A  F                    K          F + D
Sbjct: 111 TEMLRKAHFQRHSSKGTPFWAQRFGRQYLYQLPWYMIIGAPGAGKTTALVNSGLQFPLAD 170

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANS 235
                  +                +L D      +  S+  S      + L    +    
Sbjct: 171 KFGKSALRGIGGTRNCDWWFTNDAVLLDTAGRYSTQESQQDSDASEWHHFLDLLRKYRGR 230

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             I       ++S LL+ +P     +   L     E H RL       ++ L++     K
Sbjct: 231 QPINGVIVTLSVSDLLSQSPEALRNQALALRQRLMELHDRLGIRF--PVYVLVTKADLLK 288

Query: 296 RALVRQRK 303
                   
Sbjct: 289 GFRSYFGS 296


>gi|260428072|ref|ZP_05782051.1| apolipoprotein N-acyltransferase [Citreicella sp. SE45]
 gi|260422564|gb|EEX15815.1| apolipoprotein N-acyltransferase [Citreicella sp. SE45]
          Length = 511

 Score = 36.9 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 1/71 (1%)

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLS-ISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           + GL+  V        R+        + L   +  + W             +  P    F
Sbjct: 42  VAGLLGAVLVFSITSTRRGAFGAGWGVGLGYFALVLNWVTEPFQVDAATTGWMAPFALFF 101

Query: 343 LFCISSIFLLM 353
           L    ++F  +
Sbjct: 102 LAAGLALFWAL 112


>gi|269838005|ref|YP_003320233.1| hypothetical protein Sthe_1981 [Sphaerobacter thermophilus DSM
           20745]
 gi|269787268|gb|ACZ39411.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 227

 Score = 36.9 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 9/79 (11%), Positives = 22/79 (27%), Gaps = 12/79 (15%)

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
           P+    I +         R       I I++ + F                     +   
Sbjct: 41  PLAIIAIGLAQLAASRHTRVG---PAILIAVGLVFL-------ASTTGLVPGSIWSLF-- 88

Query: 342 FLFCISSIFLLMIKKKYTK 360
           +   + +I L +I ++  +
Sbjct: 89  WPLVLIAIGLFVILRRGPR 107


>gi|94984323|ref|YP_603687.1| cation diffusion facilitator family transporter [Deinococcus
           geothermalis DSM 11300]
 gi|94554604|gb|ABF44518.1| cation diffusion facilitator family transporter [Deinococcus
           geothermalis DSM 11300]
          Length = 299

 Score = 36.9 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 9/100 (9%), Positives = 32/100 (32%), Gaps = 6/100 (6%)

Query: 268 YRSEFHKRLTQWLFP-----VIFGLISIVAADKRALVRQRKKIHPIFI-SLSISFGVFWG 321
              E + RL + +       ++  L+ ++     A +        + + S  +       
Sbjct: 104 ILVEAYGRLREPVAVQTTPMLVVALLGLIVNLLSARILAGGAEDSLNVRSAYLEVLGDLL 163

Query: 322 FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTKI 361
            S  +           + ++     + I L ++ + ++ +
Sbjct: 164 GSVAVIIGALVIRLTGLTWVDPVLGAGIGLWVLPRAWSLL 203


>gi|121607297|ref|YP_995104.1| major facilitator superfamily transporter [Verminephrobacter
           eiseniae EF01-2]
 gi|121551937|gb|ABM56086.1| major facilitator superfamily MFS_1 [Verminephrobacter eiseniae
           EF01-2]
          Length = 396

 Score = 36.9 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 271 EFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE 330
           E H RL      + F  +  + A      R  +    +  ++++   V  G   +     
Sbjct: 243 EQHWRLYLPAVVLSFAALGGLFAL----ERAGRLRAALLGAIALVLLVQAGLGALAVSGA 298

Query: 331 QNPYYI--PILYLFLFCISSI 349
               ++  P++++F    +++
Sbjct: 299 TPTLWLLGPLMWVFFCGFNAL 319


>gi|308452863|ref|XP_003089210.1| hypothetical protein CRE_24889 [Caenorhabditis remanei]
 gi|308241643|gb|EFO85595.1| hypothetical protein CRE_24889 [Caenorhabditis remanei]
          Length = 684

 Score = 36.9 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/171 (5%), Positives = 43/171 (25%), Gaps = 2/171 (1%)

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                  +   +KA                      ++++     +     F+       
Sbjct: 191 QIINVKRRGRPSKADKRSPVDQFINLTPQSAQFQKLLEVTGTASTSFTAVSFLESDAPDD 250

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                   +  I++ ++   L   +    +  + ++    F   + +     + ++ ++ 
Sbjct: 251 LGFTPAMYNALIEMIQETPQL--WQNDHPNRKNGELRDKNFDDISRKLILKFNGSLDIQQ 308

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +++     +         + +  E        R    L  +   L+     
Sbjct: 309 SERMTGSFIRKIWETLKEKFQREEKLDKISQWRYYLPLQFLSNRLMPAFLL 359


>gi|294880545|ref|XP_002769056.1| hypothetical protein Pmar_PMAR027045 [Perkinsus marinus ATCC 50983]
 gi|239872155|gb|EER01774.1| hypothetical protein Pmar_PMAR027045 [Perkinsus marinus ATCC 50983]
          Length = 262

 Score = 36.5 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 6/87 (6%), Positives = 25/87 (28%), Gaps = 3/87 (3%)

Query: 277 TQWLFPVIFGLISIVA---ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
           +  +  +I   +++     A          K   I +             ++    +   
Sbjct: 23  SSPILILIIVALTLFFTFGALMALRAPAGSKWRAIILPKMGIIFCSLLVWFVFTGSDVYT 82

Query: 334 YYIPILYLFLFCISSIFLLMIKKKYTK 360
             I  + +     ++++L    ++  +
Sbjct: 83  VLILCIPVAGPMFAALWLWYRDRRQKR 109


>gi|261416817|ref|YP_003250500.1| adenylate/guanylate cyclase with Chase sensor [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373273|gb|ACX76018.1| adenylate/guanylate cyclase with Chase sensor [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302325711|gb|ADL24912.1| adenylate/guanylate cyclase domain protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 1010

 Score = 36.5 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/250 (8%), Positives = 69/250 (27%), Gaps = 25/250 (10%)

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
                  I +    ++         +N +         +I      +      I   +  
Sbjct: 451 YAYKDLKIGEHKHLSRSMDISYDKAKNKWSASIHFFTNQI--LQDISNASDQQIASIKPG 508

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN------- 234
           +  +    +   I+   + +I   G  +   P ++    + +       ++ +       
Sbjct: 509 EELRFGPYKRIPINDHGRFLIKYKGRFNDLKPETRAFKHISYYDIYRDHKNLDQYAGKTV 568

Query: 235 --------SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
                      IV   +++N+  +L       N   +   T  +E ++R+   +  +I  
Sbjct: 569 ILGSSVSALFDIVNGPHEENIPAILVHANIIKNVLEDDYMTILNENYQRIAVIVLAIICM 628

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
           LI +          +      + I +++ + +F    +  +        +  +       
Sbjct: 629 LIGVYF--------RSFVSLILTIGIAVLYTLFAYICFKHNIYIGVSKQLLAIITPNIIA 680

Query: 347 SSIFLLMIKK 356
             +      K
Sbjct: 681 MVVQAYFENK 690


>gi|224062611|ref|XP_002197267.1| PREDICTED: transmembrane channel-like 3 [Taeniopygia guttata]
          Length = 1122

 Score = 36.5 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 45/161 (27%), Gaps = 6/161 (3%)

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +  +    Q+G           +D +   +   S D   + F++   Q E  ++      
Sbjct: 17  KKQRTVKRQTGIYTYQEPPHSNSDDDAAEEKAESHDPEQI-FQNIQYQKEIMSNIRCRPW 75

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLE-----TYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              Q L  L         Y   L          +E  K+  +  +  +   I      K+
Sbjct: 76  PMRQKLRALRQAKEIVLKYEGRLTRTRGYQAAGAELWKKFIRLAYNFVVIFIPWEMRIKK 135

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
                   +   FI L   FG+    + +       P  + 
Sbjct: 136 IESHFGSGVASYFIFLRWLFGINIVLTIMTGAFVVLPELLA 176


>gi|326561252|gb|EGE11611.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis 46P47B1]
          Length = 120

 Score = 36.5 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 1/117 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R    +   + + +  +  V   L  ++ +S  T +L   L    Y  P  L 
Sbjct: 5   ILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNISE-TYTLTDALLFILYRSPYFLV 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              P    +     L  +  ++EL+++   G S   ++   +  A++         +
Sbjct: 64  QFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGVNH 120


>gi|323351146|ref|ZP_08086802.1| hypothetical protein HMPREF9398_0850 [Streptococcus sanguinis
          VMC66]
 gi|322122370|gb|EFX94081.1| hypothetical protein HMPREF9398_0850 [Streptococcus sanguinis
          VMC66]
          Length = 689

 Score = 36.5 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 1  MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISG 54
          M+    Y+++   +SFL      +F+ +   +     L  S+  S   + + + 
Sbjct: 1  MEIIMKYLMKKYVKSFLFGL-TFIFVLFSSAVYAVTELTESTNLSTLDIYQFTL 53


>gi|307306416|ref|ZP_07586160.1| protein of unknown function DUF218 [Sinorhizobium meliloti BL225C]
 gi|306902258|gb|EFN32855.1| protein of unknown function DUF218 [Sinorhizobium meliloti BL225C]
          Length = 262

 Score = 36.5 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 16/59 (27%)

Query: 272 FHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE 330
               + Q L      L+  V        R    +    +++          SY +  +E
Sbjct: 7   IFWLVAQPLSLAFLALVVGVLLMLGRFRRSGGTLSAFGLAVLFVTLFTTAGSYFLQILE 65


>gi|320163247|gb|EFW40146.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 511

 Score = 36.5 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 274 KRLTQWLFPVIFGLIS--IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
           +RL    +     L     VA       R+R       + ++     F      +     
Sbjct: 270 ERLLMPWWCAFLPLCCTSFVALVSVVAQRRRSGSALPLLEITFIALFFVFLVVGLKLDGW 329

Query: 332 NPYYIPILYLFLFCISSIFLLMI 354
             +  PI+Y+ ++ +  I   ++
Sbjct: 330 INWSWPIVYIPIYGLLFIGSFIL 352


>gi|324991425|gb|EGC23358.1| hypothetical protein HMPREF9388_0267 [Streptococcus sanguinis
          SK353]
          Length = 689

 Score = 36.5 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 1  MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISG 54
          M+    Y+++   +SFL      +F+ +   +     L  S+  S   + + S 
Sbjct: 1  MEIIMKYLMKKYVKSFLFGL-TFIFVLFSSAVYAVTELTESTNLSTLDIYQFSL 53


>gi|307319303|ref|ZP_07598732.1| protein of unknown function DUF218 [Sinorhizobium meliloti AK83]
 gi|306895139|gb|EFN25896.1| protein of unknown function DUF218 [Sinorhizobium meliloti AK83]
          Length = 262

 Score = 36.5 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 16/59 (27%)

Query: 272 FHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE 330
               + Q L      L+  V        R    +    +++          SY +  +E
Sbjct: 7   IFWLVAQPLSLAFLALVVGVLLMLGRFRRSGGTLSAFGLAVLFVTLFTTAGSYFLQILE 65


>gi|258510579|ref|YP_003184013.1| hypothetical protein Aaci_0576 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477305|gb|ACV57624.1| hypothetical protein Aaci_0576 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 1007

 Score = 36.5 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 36/368 (9%), Positives = 97/368 (26%), Gaps = 38/368 (10%)

Query: 7   YILRCIGRSF--LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           YI   +  +F   +  + + F  W IQ             +L+ LL     +I   +  +
Sbjct: 32  YIFANLLWTFCTFLVQVSLAFFQWGIQ-----------GTALSGLLDAVLSVIHLGVNTL 80

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P  F +    +      +           + +      +   +                
Sbjct: 81  EPIAFVLALFVLAGMWVWDLLRK-----RPTVMWARFVKMCATLFAIWIYGHVNATFVNT 135

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI----VDSRD 180
             +   + +A     +     +          L  +I         +   +        D
Sbjct: 136 LNNATDETAASLGNVVLSLTHQGETVSSASTTLEQQIWSSLVQVPWEQGEMGGDLSIRSD 195

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             +     A SG      Q        + +    ++  + M      L +    ++    
Sbjct: 196 DLSSVEACATSGVDWNKVQTTDKWADALLQLPVGNQARNCMA---GILNSSKYPTAQQAF 252

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            + ++    L             L+    +   +    +L  ++ G+  +          
Sbjct: 253 SSGNRLSVTLAVGFNLLGPVLFLLVFGLLAMIAR--AGFLITLMLGVFVLPVELFPVTRT 310

Query: 301 QRKKIHPIFISLSISFGVFWGFSY----------IIHKIEQNPYYIPILYLFLFCISSIF 350
             + +     +L+   G      Y            + I+  P ++ +L+L +   ++IF
Sbjct: 311 YGRTLRWALTALAGLVGTAVIDLYVAVVIVVGDVFQNAIQGAPLFLSMLWLNVLYFAAIF 370

Query: 351 -LLMIKKK 357
               + ++
Sbjct: 371 VFFWLLRR 378


>gi|225637475|ref|NP_001139481.1| solute carrier organic anion transporter family member 5A1 isoform
           3 [Homo sapiens]
          Length = 793

 Score = 36.5 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 30/117 (25%), Gaps = 3/117 (2%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQ---ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
                FL+    + FI    Q   I+  +  V        + ++         +P    F
Sbjct: 591 NTLIPFLVFLFIVTFITACAQPSAIIVTLRSVEDEERPFALGMQFVLLRTLAYIPTPIYF 650

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
              ++TT +L       +    +   TS   +   +      +              
Sbjct: 651 GAVIDTTCMLWQQECGVQGSCWEYNVTSFRFVYFGLAAGLKFVGFIFIFLAWYSIKY 707


>gi|320033901|gb|EFW15847.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 311

 Score = 36.5 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 18/115 (15%)

Query: 258 PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG 317
           P    + L  YR   H     ++  +   ++ +V        R    +  IF ++S  F 
Sbjct: 127 PKALSKGLNAYRKVAHWLFVAYIIALASSVVQLVLGISAVFSRWGSLVTTIFATISTVFT 186

Query: 318 VFWGFSYII----HKIEQNPYYIPI--------------LYLFLFCISSIFLLMI 354
           +    +            N    P                   LF ++     + 
Sbjct: 187 ILASITASALYGILAGAINGGLKPFNIKASLGGRMFAITWLATLFAVAGGVFWLF 241


>gi|257793103|ref|YP_003186501.1| hypothetical protein Aaci_3116 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479795|gb|ACV60112.1| hypothetical protein Aaci_3116 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 996

 Score = 36.5 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 36/368 (9%), Positives = 97/368 (26%), Gaps = 38/368 (10%)

Query: 7   YILRCIGRSF--LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           YI   +  +F   +  + + F  W IQ             +L+ LL     +I   +  +
Sbjct: 32  YIFANLLWTFCTFLVQVSLAFFQWGIQ-----------GTALSGLLDAVLSVIHLGVNTL 80

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P  F +    +      +           + +      +   +                
Sbjct: 81  EPIAFVLALFVLAGMWVWDLLRK-----RPTVMWARFVKMCATLFAIWIYGHVNATFVNT 135

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI----VDSRD 180
             +   + +A     +     +          L  +I         +   +        D
Sbjct: 136 LNNATDETAASLGNVVLSLTHQGETVSSASTTLEQQIWSSLVQVPWEQGEMGGDLSIRSD 195

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             +     A SG      Q        + +    ++  + M      L +    ++    
Sbjct: 196 DLSSVEACATSGVDWNKVQTTDKWADALLQLPVGNQARNCMA---GILNSSKYPTAQQAF 252

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            + ++    L             L+    +   +    +L  ++ G+  +          
Sbjct: 253 SSGNRLSVTLAVGFNLLGPVLFLLVFGLLAMIAR--AGFLITLMLGVFVLPVELFPVTRT 310

Query: 301 QRKKIHPIFISLSISFGVFWGFSY----------IIHKIEQNPYYIPILYLFLFCISSIF 350
             + +     +L+   G      Y            + I+  P ++ +L+L +   ++IF
Sbjct: 311 YGRTLRWALTALAGLVGTAVIDLYVAVVIVVGDVFQNAIQGAPLFLSMLWLNVLYFAAIF 370

Query: 351 -LLMIKKK 357
               + ++
Sbjct: 371 VFFWLLRR 378


>gi|296817419|ref|XP_002849046.1| ATP-binding cassette transporter [Arthroderma otae CBS 113480]
 gi|238839499|gb|EEQ29161.1| ATP-binding cassette transporter [Arthroderma otae CBS 113480]
          Length = 1506

 Score = 36.5 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/184 (7%), Positives = 40/184 (21%), Gaps = 4/184 (2%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETT 74
            F    +    +  +  + + I  +S + +   +   I    +      V P  + +   
Sbjct: 628 FFFYLLVVFTIVLAMSGVFRFIGSLSRTEQQAMVPASIMLLALLIFTGFVVPIDYMLPWC 687

Query: 75  NVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSA 134
             +     N      +    +     + +    I       ++          +      
Sbjct: 688 RWI--NYLNPVAYGYEALMINEFHGREFLCTSYIPDYTNAAMNNVACNAVGAVSGSMYVN 745

Query: 135 KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI 194
                 T      +  +R      I +     +                 ++   + G I
Sbjct: 746 GDHYINTAYSYHHSHKWRNFG--IILVMAVFNHLIYFITSEYARAKKSKGEVLVFRRGFI 803

Query: 195 DLDR 198
               
Sbjct: 804 HRSP 807


>gi|189536631|ref|XP_684701.3| PREDICTED: solute carrier organic anion transporter family member
           5A1-like [Danio rerio]
          Length = 859

 Score = 36.5 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 32/129 (24%), Gaps = 3/129 (2%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQ---ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
                FL+    +  I    Q   I+  +  V        + ++         +P    F
Sbjct: 660 NTLIPFLIFLFIVTLITACAQPSAIIVTLRSVDEQERPFALGMQFVLLRTLAYIPTPIYF 719

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              ++TT +L   +        +   TS   +   +      +                 
Sbjct: 720 GAVIDTTCMLWQQDCGIHGSCWEYDVTSFRFVYFGLAASLKFVGFIFIFLTWYSIKYKED 779

Query: 128 TIKQLSAKA 136
            +K+     
Sbjct: 780 RLKRWQQHL 788


>gi|141796399|gb|AAI39756.1| SLCO5A1 protein [Homo sapiens]
          Length = 793

 Score = 36.5 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 30/117 (25%), Gaps = 3/117 (2%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQ---ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
                FL+    + FI    Q   I+  +  V        + ++         +P    F
Sbjct: 591 NTLIPFLVFLFIVTFITACAQPSAIIVTLRSVEDEERPFALGMQFVLLRTLAYIPTPIYF 650

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
              ++TT +L       +    +   TS   +   +      +              
Sbjct: 651 GAVIDTTCMLWQQECGVQGSCWEYNVTSFRFVYFGLAAGLKFVGFIFIFLAWYSIKY 707


>gi|149194453|ref|ZP_01871550.1| hypothetical protein CMTB2_07626 [Caminibacter mediatlanticus TB-2]
 gi|149135628|gb|EDM24107.1| hypothetical protein CMTB2_07626 [Caminibacter mediatlanticus TB-2]
          Length = 338

 Score = 36.5 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 114/353 (32%), Gaps = 18/353 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           +  YILR   ++F+++ +    +  ++        + +   S N+      Y+    + +
Sbjct: 2   YFWYILRNYLKNFVITLIGFALLFVLVDYSFNFAKLPN---SSNLQTLYIFYVFIDSIFI 58

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P          L  M +  EL+   + G     ++KP+++ ++   I +   ++    
Sbjct: 59  LYPLALVFAFLLTLNKMIKFNELVSFYSLGFKPFKILKPIIYFSLFFFILIMYLQSTKIA 118

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                 K +    QL     +L+ N       +L   + +           I   +D + 
Sbjct: 119 YVNQYAKAIKNNMQLKNKNLFLKYNNSVVYIKELNPILKEAYDVK------IFVVKDNKL 172

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            KI Y +      +             K    K+   + F         +N  T      
Sbjct: 173 IKIIYTKKAKFFKNHWISNKAVITTLSKDRWDKEEKKLVFLENFKPKILSNLKT------ 226

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             N   L +       ++   L    S    ++   L  +I  +  +        +R   
Sbjct: 227 -LNTISLSDAYIAIKYFKDIDLNRVLSIVFFKVFTPLSLIILII--LFFYTSPIHIRISN 283

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               +  S+S++  V+     +    +Q      ++ L  F +  +  L++++
Sbjct: 284 VSIFMIKSISLTIFVWGVELLLFKFTKQGVMPYYVIALPFFILIILTFLILRR 336


>gi|109086637|ref|XP_001099455.1| PREDICTED: solute carrier organic anion transporter family member
           5A1 isoform 1 [Macaca mulatta]
 gi|109086639|ref|XP_001099565.1| PREDICTED: solute carrier organic anion transporter family member
           5A1 isoform 2 [Macaca mulatta]
          Length = 846

 Score = 36.5 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 34/128 (26%), Gaps = 3/128 (2%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQ---ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
                FL+    + FI    Q   I+  +  V        + ++         +P    F
Sbjct: 644 NTLIPFLVFLFIVTFITACAQPSAIIVTLRSVEDEERPFALGMQFVLLRTLAYIPTPIYF 703

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              ++TT +L       +    +   TS   +   +      +                 
Sbjct: 704 GAVIDTTCMLWQQECGVQGSCWEYNVTSFRFVYFGLAAGLKFVGFIFIFLAWYSIKYKED 763

Query: 128 TIKQLSAK 135
            +++   +
Sbjct: 764 GLQRRRWR 771


>gi|303310359|ref|XP_003065192.1| hypothetical protein CPC735_020750 [Coccidioides posadasii C735
           delta SOWgp]
 gi|240104852|gb|EER23047.1| hypothetical protein CPC735_020750 [Coccidioides posadasii C735
           delta SOWgp]
          Length = 311

 Score = 36.5 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 18/115 (15%)

Query: 258 PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG 317
           P    + L  YR   H     ++  +   ++ +V        R    +  IF ++S  F 
Sbjct: 127 PKALSKGLNAYRKVAHWLFVAYIIALASSVVQLVLGISAVFSRWGSLVTTIFATISTVFT 186

Query: 318 VFWGFSYII----HKIEQNPYYIPI--------------LYLFLFCISSIFLLMI 354
           +    +            N    P                   LF ++     + 
Sbjct: 187 ILASITASALYGILAGAINGGLKPFNIKASLGGRMFAITWLATLFAVAGGVFWLF 241


>gi|229076764|ref|ZP_04209676.1| hypothetical protein bcere0024_55350 [Bacillus cereus Rock4-18]
 gi|228706326|gb|EEL58587.1| hypothetical protein bcere0024_55350 [Bacillus cereus Rock4-18]
          Length = 800

 Score = 36.5 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRK-KIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           +   L   +  L+++V A      R        + + ++I F +   F            
Sbjct: 337 IIVALMSPVMLLMALVPAWAGTAKRFLAELFRTLLMKVAIGFLLTLMFWVSSILYSATDK 396

Query: 335 YIPILYLFLFCISSIFLLMIKK 356
           Y  ++   L  +S + + + +K
Sbjct: 397 YGYLVVAALQVLSFLGVWLYRK 418


>gi|229106214|ref|ZP_04236757.1| hypothetical protein bcere0019_52700 [Bacillus cereus Rock3-28]
 gi|228677225|gb|EEL31559.1| hypothetical protein bcere0019_52700 [Bacillus cereus Rock3-28]
          Length = 812

 Score = 36.5 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRK-KIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           +   L   +  L+++V A      R        + + ++I F +   F            
Sbjct: 337 IIVALMSPVMLLMALVPAWAGTAKRFLAELFRTLLMKVAIGFLLTLMFWVSSILYSATDK 396

Query: 335 YIPILYLFLFCISSIFLLMIKK 356
           Y  ++   L  +S + + + +K
Sbjct: 397 YGYLVVAALQVLSFLGVWLYRK 418


>gi|269216931|ref|ZP_06160785.1| Fec-type ABC transporter, permease protein [Slackia exigua ATCC
           700122]
 gi|269129738|gb|EEZ60822.1| Fec-type ABC transporter, permease protein [Slackia exigua ATCC
           700122]
          Length = 364

 Score = 36.5 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 284 IFGLISIVAADKRALVRQ--RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
             GLIS +      + R+        +  +  +   V    S +  ++  +P  +PI  +
Sbjct: 286 FVGLISFIGLIAPHIARRVVGSDYRYLLPASLVLGAVIMLGSDLAARMVISPVILPIGAI 345

Query: 342 FLFCISSIFLLMIKKKYTK 360
             F  +  FL+++ + Y +
Sbjct: 346 TSFLGAPFFLVLLYRGYAR 364


>gi|224532217|ref|ZP_03672849.1| conserved hypothetical integral membrane protein [Borrelia
           valaisiana VS116]
 gi|224511682|gb|EEF82088.1| conserved hypothetical integral membrane protein [Borrelia
           valaisiana VS116]
          Length = 390

 Score = 36.5 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 1/108 (0%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           LN  P       + L  +  EF+++++  L  + F  ++                  I I
Sbjct: 282 LNFKPYQDKSMIQNLALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISI 341

Query: 311 SLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            + + +  +F G      +   NP  + IL   +  ++   L +   K
Sbjct: 342 IVCVFYWVMFIGGKVYTVQYAPNPIVVTILPNLILIVAGAILFLRLLK 389


>gi|296226656|ref|XP_002759023.1| PREDICTED: solute carrier organic anion transporter family member
           5A1 isoform 1 [Callithrix jacchus]
          Length = 848

 Score = 36.5 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 34/128 (26%), Gaps = 3/128 (2%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQ---ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
                FL+    + FI    Q   I+  +  V        + ++         +P    F
Sbjct: 646 NTLIPFLVFLFIVTFITACAQPSAIIVTLRSVEDEERPFALGMQFVLLRTLAYIPTPIYF 705

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              ++TT +L       +    +   TS   +   +      +                 
Sbjct: 706 GAVIDTTCMLWQQECGVQGSCWEYNVTSFRFVYFGLAAGLKFVGFIFIFLAWYSIKYKED 765

Query: 128 TIKQLSAK 135
            +++   +
Sbjct: 766 GLQRRRWR 773


>gi|257057508|ref|YP_003135340.1| hypothetical protein Svir_35570 [Saccharomonospora viridis DSM
           43017]
 gi|256587380|gb|ACU98513.1| predicted membrane protein [Saccharomonospora viridis DSM 43017]
          Length = 369

 Score = 36.5 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 8/86 (9%), Positives = 26/86 (30%), Gaps = 3/86 (3%)

Query: 279 WLF-PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
               P+   LI I             KI     +   +  +   ++          +   
Sbjct: 187 PFAHPLFTVLIGIGVGLVVRSRSSGAKIAVPLAAYVAAVLLHALWNASATLGGAEVFLNI 246

Query: 338 --ILYLFLFCISSIFLLMIKKKYTKI 361
             ++ + +F    + ++  +++  +I
Sbjct: 247 YFLIMVPIFTAVVLIMMWQRRREQRI 272


>gi|228949584|ref|ZP_04111827.1| hypothetical protein bthur0007_56890 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228810068|gb|EEM56446.1| hypothetical protein bthur0007_56890 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 737

 Score = 36.5 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 40/364 (10%), Positives = 97/364 (26%), Gaps = 62/364 (17%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN---ILLKISGYLIPTVLPM 63
           Y+LR     FL+       ++ V+  L+ +       +       +      L P  + +
Sbjct: 25  YVLR-WLGWFLIV-----GLSLVVDALEGVTDAILGIKGFFNSPEIQNFVDMLYPLFVVL 78

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           +      +    ++      ++++I      S + L   +      +  F   +  +++ 
Sbjct: 79  LAISFLYIGYMFIMNKQMNRSQIIINIFVTLSVLCL---LSTGMTKVDKFTDDAIAVVKS 135

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           + + ++     K  +       +     + D +    I + N         I        
Sbjct: 136 EQKGSLSDEIIKKNITDVAVIDQNGWKKKEDINPKNNIPEKNIRQIDITEKIDKDFAFTK 195

Query: 184 HKIYYAQSGSIDLDRQAI---------ILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
            K        I  +++ +          L DG      P         F +         
Sbjct: 196 DKNLSDDGQKILQNKRVMDALGVASLAELKDG-WFDFFPEKYYRWHWNFWNIFFTLLITG 254

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF-GLISIVAA 293
            + +++                                  +L +  + + F  L+  + A
Sbjct: 255 LTLLLVSI--------------------------------KLARLFYELAFNYLLVNIIA 282

Query: 294 DKRALVRQR-----KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
                  Q+       I  IFI+  + F     F      +        + YL      S
Sbjct: 283 PADVANGQKLKAVLSNILNIFIATIMIFLSLNLFIMGTTFLHDK--LSGVPYLIALAAFS 340

Query: 349 IFLL 352
           + +L
Sbjct: 341 MAVL 344


>gi|198422612|ref|XP_002122159.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
          Length = 1547

 Score = 36.5 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 22/247 (8%), Positives = 66/247 (26%), Gaps = 21/247 (8%)

Query: 127  STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
              ++             +  E+        +  +              +++       + 
Sbjct: 1133 QQVEVQQGVPIYPTLSRHTPEHPKHIEPVVVTSQSHFVQDRPISDEHVVIEVETMDRRRR 1192

Query: 187  YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
                 G        I L++           +   +         +  +S  ++ K   Q+
Sbjct: 1193 SSEGKGLRHGGDSGIDLSNY--------DNNRDRLSSDPSEYDIKRRSSKRVLTKDTLQS 1244

Query: 247  LSFLLNPNPNN---PNYRPELLETYRSEFHKRLTQWLFPVI-FGLISIVAADKRALVRQR 302
             S  +     +   P+     ++      +         ++  GL   ++    +  +  
Sbjct: 1245 SSPYMEWYKRHYLKPSCCHLFIKHILCAINIIFLIVGLCLVGLGLWGFISLLTSSNPKTW 1304

Query: 303  KKIHP--IFISLSISFGVFWGFSYIIHKIEQNP-------YYIPILYLFLFCISSIFLLM 353
            K      +FI L +   +    S  I  I ++          + I+   LF    I   +
Sbjct: 1305 KLFIFDPMFIVLIVGVIMTVVTSLAIVGIMKDSVCVIKCYITMLIILCILFIAGGIAFWI 1364

Query: 354  IKKKYTK 360
            ++ + ++
Sbjct: 1365 LRPQVSQ 1371


>gi|298245508|ref|ZP_06969314.1| hypothetical protein Krac_8170 [Ktedonobacter racemifer DSM 44963]
 gi|297552989|gb|EFH86854.1| hypothetical protein Krac_8170 [Ktedonobacter racemifer DSM 44963]
          Length = 658

 Score = 36.1 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 2/80 (2%)

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQ-RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           L      ++  ++++         R  R K    F+  +I   +                
Sbjct: 6   LALIGTVIVMVILTLGRLVFGRRERFERGKFTRWFLGYTIFNFLLSLLILYFSLPALTGP 65

Query: 335 YIPILY-LFLFCISSIFLLM 353
           +    + L+   +SS+  L 
Sbjct: 66  FWGWQWVLWPLFLSSLGNLF 85


>gi|222147838|ref|YP_002548795.1| hypothetical protein Avi_1105 [Agrobacterium vitis S4]
 gi|221734826|gb|ACM35789.1| hypothetical protein Avi_1105 [Agrobacterium vitis S4]
          Length = 347

 Score = 36.1 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 10/87 (11%), Positives = 30/87 (34%), Gaps = 1/87 (1%)

Query: 271 EFHKRLTQWLFPVIFGLISIVAA-DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
           E     T  ++ ++  ++ I  A       RQ      +F+ +     +F+   ++  + 
Sbjct: 93  ELGALFTFSVYDLVLAMLGIAVACAMMPSARQFAITIGVFLGVLSVMLLFFDPIFVAIRE 152

Query: 330 EQNPYYIPILYLFLFCISSIFLLMIKK 356
                 + ++      I+   L +  +
Sbjct: 153 SALGQVLYLIAPLAVAITGASLWLSGR 179


>gi|292610951|ref|XP_698555.4| PREDICTED: solute carrier organic anion transporter family member
           5A1 [Danio rerio]
          Length = 900

 Score = 36.1 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 3/111 (2%)

Query: 13  GRSFLMSCLFIVFIAWVIQ---ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCF 69
             +FL+    +  I    Q   I+  +  V        + ++         +P    F  
Sbjct: 700 LITFLIFLFIVTLITACAQPSVIIVTLRSVDEEDRPFALGMQFVLLRTLAYIPTPIYFGA 759

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
            ++TT +L   +        +   TS   +   +      L          
Sbjct: 760 VIDTTCMLWQQDCGFHGSCWEYDVTSLRFVYFGLAASLKFLGFLFIFLTWY 810


>gi|332251451|ref|XP_003274859.1| PREDICTED: solute carrier organic anion transporter family member
           5A1 [Nomascus leucogenys]
          Length = 848

 Score = 36.1 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 34/128 (26%), Gaps = 3/128 (2%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQ---ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
                FL+    + FI    Q   I+  +  V        + ++         +P    F
Sbjct: 646 NTLIPFLVFLFIVTFITACAQPSAIIVTLRSVEDEERPFALGMQFVLLRTLAYIPTPIYF 705

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              ++TT +L       +    +   TS   +   +      +                 
Sbjct: 706 GAVIDTTCMLWQQECGVQGSCWEYNVTSFRFVYFGLAAGLKFVGFVFIFLAWYSIKYKED 765

Query: 128 TIKQLSAK 135
            +++   +
Sbjct: 766 GLQRRRWR 773


>gi|167754784|ref|ZP_02426911.1| hypothetical protein CLORAM_00288 [Clostridium ramosum DSM 1402]
 gi|237735930|ref|ZP_04566411.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167705616|gb|EDS20195.1| hypothetical protein CLORAM_00288 [Clostridium ramosum DSM 1402]
 gi|229381675|gb|EEO31766.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 243

 Score = 36.1 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/158 (7%), Positives = 41/158 (25%), Gaps = 10/158 (6%)

Query: 214 ISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFH 273
            ++    +++    +   +   S  ++ A   +       + N+          +R    
Sbjct: 63  DNQFDQDIEYSEKGMDNSNYKQSREIIDAKIISEEETAADDNNDYQNNKRHKNNFRGNSD 122

Query: 274 K-RLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLS---------ISFGVFWGFS 323
           + R+      +    +++        +          + +          I   V +  +
Sbjct: 123 RNRILLIFIIIGAVFLALPVGGGILGLGLGFFGAVFGLGVGILCGGAACLIGAIVCFVKA 182

Query: 324 YIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTKI 361
           ++I         I +         +     + K   KI
Sbjct: 183 FMIIAAYPGAGLITMAAGCALIALAFVFFWLAKGLIKI 220


>gi|237723104|ref|ZP_04553585.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229447626|gb|EEO53417.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 789

 Score = 36.1 bits (81), Expect = 8.0,   Method: Composition-based stats.
 Identities = 26/277 (9%), Positives = 70/277 (25%), Gaps = 8/277 (2%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSR 96
           +  +    + +     + +     LP+  P  F          +      +         
Sbjct: 10  DRQTDLIITASDEAFYTLFACGDSLPLQIPVVFF-GIKYPDMELIATHPNVCGFTANPDF 68

Query: 97  ITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD 156
             +++    +       + + +N           +   K        Y  +    +    
Sbjct: 69  DVILRQAQKIFPQRKEVVCVIDNSFLSNKGLEDFEEEWKIFQKDNPDYRMKVYNTQNHTT 128

Query: 157 LYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK 216
            +I  +   P N+ + + +          +       +   +    L +G        S 
Sbjct: 129 SHIIAAICYPRNSYERLVVAPKWSPFLSFVGKNSKAPVFSSQNVG-LTNGVFCAYDSDSY 187

Query: 217 DISIMKFKSYTLQTESANSSTI------VLKANDQNLSFLLNPNPNNPNYRPELLETYRS 270
             ++   +   L  +  +   I           D       + +P+  +    ++     
Sbjct: 188 ASALSAAQRAALVLKDTSPQEIGVTEITQGFIYDYKQLDYFHIDPDKVSSSGTIVNEPYW 247

Query: 271 EFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHP 307
           E +K L   L+P I  L+           R+  K   
Sbjct: 248 EKYKYLFILLYPSILALLIASIVWLMRANRRESKRRI 284


>gi|86747428|ref|YP_483924.1| acyltransferase 3 [Rhodopseudomonas palustris HaA2]
 gi|86570456|gb|ABD05013.1| Acyltransferase 3 [Rhodopseudomonas palustris HaA2]
          Length = 660

 Score = 36.1 bits (81), Expect = 8.0,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
           +R+ +    +   LI+   A    L     +     I    +F       +     E + 
Sbjct: 69  RRINRIFPALALVLITCAVAGWFLLFPVDYRDAGKAIGFGAAFLSNLALLHGAGYFETSS 128

Query: 334 YYIPILYLFLFCISSIFLLM------IKKKYTK 360
              P+L+L+   +   F L+      +  ++ +
Sbjct: 129 ELDPLLHLWSLGVEEQFYLLWPPVIVLAWRWPR 161


>gi|330469145|ref|YP_004406888.1| cytochrome oxidase assembly [Verrucosispora maris AB-18-032]
 gi|328812116|gb|AEB46288.1| cytochrome oxidase assembly [Verrucosispora maris AB-18-032]
          Length = 321

 Score = 36.1 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 9/77 (11%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 280 LFPVIFGLISIVAADKRALVR-QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
           L   +  LI+          R +R+   P+ +++ +          I  + + +P  + I
Sbjct: 73  LLTFVLVLIAGATLLAVLAHRPRRRGALPLALAVVLGIVAQAVIGGITVRTQLHPSIVGI 132

Query: 339 LYLFLFCISSIFLLMIK 355
            ++    +  +   + +
Sbjct: 133 HFVVSMLLLLVSYALWR 149


>gi|82705193|ref|XP_726868.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23482453|gb|EAA18433.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 460

 Score = 36.1 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 21/227 (9%), Positives = 56/227 (24%), Gaps = 8/227 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y++        +  + +  +         + L        +++L + G     +
Sbjct: 242 MNKIYKYVVCSFFGELFVISIIVFSLFI-------LKLFIKDNNKFSVILTMYGIFY-KI 293

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              +      +    +L+          I     +          + I L +  +  +NI
Sbjct: 294 FCYIFAHYVLVMGLYILSIYYNIYVYRDIYEHSFNFFCYHYVYNNIHIHLLMLFYALQNI 353

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +     +      A   +      + E +  +     Y      +P +            
Sbjct: 354 VFTINDTFNCLRMAIIIIKHVIIKIYEKITCKNFITFYELEEDKSPLSLNCMNKFKCKHC 413

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
                      G ID+D              + I++    + F +  
Sbjct: 414 LNDKCCKDKNCGEIDIDEIHQFEYAKTKFSFTDINQKQYFLLFLTIE 460


>gi|295087894|emb|CBK69417.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 869

 Score = 36.1 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 26/277 (9%), Positives = 71/277 (25%), Gaps = 8/277 (2%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSR 96
           +  +    + +     + +    +LP+  P  F          +      +         
Sbjct: 90  DRQTDLIITASDEAFYTLFACGDLLPLQIPVVFF-GIKYPDMELIATHPNVCGFTANPDF 148

Query: 97  ITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD 156
             +++    +       + + +N           +   K        Y  +    +    
Sbjct: 149 DVILRQAQKIFPQRKEVVCVIDNSFLSNKGLEDFEEEWKIFQKDNPDYRMKVYNTQNHTT 208

Query: 157 LYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK 216
            +I  +   P N+ + + +          +       +   +    L +G        S 
Sbjct: 209 SHIIAAICYPRNSYERLVVAPKWSPFLSFVGKNSKAPVFSSQNVG-LTNGVFCAYDSDSY 267

Query: 217 DISIMKFKSYTLQTESANSSTI------VLKANDQNLSFLLNPNPNNPNYRPELLETYRS 270
             ++   +   L  +  +   I           D       + +P+  +    ++     
Sbjct: 268 ASALSAAQRAALVLKGTSPQEIGVTEITQGFIYDYKQLDYFHIDPDKVSSSGTIVNEPYW 327

Query: 271 EFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHP 307
           E +K L   L+P I  L+           R+  K   
Sbjct: 328 EKYKYLFILLYPSILALLIASIVWLMRANRRESKRRI 364


>gi|168210281|ref|ZP_02635906.1| putative membrane protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170711667|gb|EDT23849.1| putative membrane protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 718

 Score = 36.1 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 38/345 (11%), Positives = 92/345 (26%), Gaps = 17/345 (4%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +     +    +  VFI  +  ++ ++  V  S   +           P +  ++  
Sbjct: 16  YFSKSNFIIYGFRLVGWVFIKGLGFLVDKLEDVVKSVTVVTDFF-----NSPEITNLINK 70

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI-----SENII 121
           F   +    V + +    +L+I      S++ +   +    I++           +  +I
Sbjct: 71  FSPLLYLLLVASIIFIGYQLVINKKFDRSKLPMNIILALCIIVVMPLAMSKANILTNKVI 130

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF--IVDSR 179
                 +       +        L++  F   DD     I   N           I +  
Sbjct: 131 GEIQGESQFSDQIISNNVTDLYLLDQANFPIKDDGTVGDIDVKNNVGNNITKINPIEEID 190

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             + +     ++  I        LN      K         + + +  +         I 
Sbjct: 191 RDKVNNKKVFENEIIFDSNGEANLNKIVGLFKWDDEYYRYHINYMTIIVTLLITAFVMIF 250

Query: 240 LKANDQNLSFLLNPNP----NNPNYRPELLETYRSEFHKRLTQWLFPVI-FGLISIVAAD 294
                  LS  L  +               +  R   +  ++ ++  +    ++ +    
Sbjct: 251 TSVKMIKLSIELAFSKVMTTFVAVADLSNGQRMRQSVNGIISIFVAMISTMLMLKLYILG 310

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
              L  +   I  I   L  +  V  G +YI      +     + 
Sbjct: 311 TAYLSDKISGIGTICAMLGCAIFVIDGPNYIEKMFGVDAGLSSVW 355


>gi|289208256|ref|YP_003460322.1| peptidase M48 Ste24p [Thioalkalivibrio sp. K90mix]
 gi|288943887|gb|ADC71586.1| peptidase M48 Ste24p [Thioalkalivibrio sp. K90mix]
          Length = 657

 Score = 36.1 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 6/53 (11%), Positives = 15/53 (28%)

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
              ++  LI           R  +    I ++  +   V +   +    I  +
Sbjct: 198 FGILVMALIGQRVLLAMRFSRNNRNAGGIVVAGLVLMIVGYIGLFFGRWIRAS 250


>gi|271964963|ref|YP_003339159.1| arabinose efflux permease-like protein [Streptosporangium roseum
           DSM 43021]
 gi|270508138|gb|ACZ86416.1| Arabinose efflux permease-like protein [Streptosporangium roseum
           DSM 43021]
          Length = 738

 Score = 36.1 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 6/70 (8%), Positives = 25/70 (35%)

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
            AA   + + + +       S  +  G+    +Y+     +     P++  +   +  + 
Sbjct: 199 AAAPPPSDMPRARVGRLALFSFLLGCGIAAVNTYLALFGAERLGLGPVVAAWPVAVLGLA 258

Query: 351 LLMIKKKYTK 360
            +  +  +++
Sbjct: 259 GVAGRVGWSR 268


>gi|291294546|ref|YP_003505944.1| drug resistance transporter, EmrB/QacA subfamily [Meiothermus ruber
           DSM 1279]
 gi|290469505|gb|ADD26924.1| drug resistance transporter, EmrB/QacA subfamily [Meiothermus ruber
           DSM 1279]
          Length = 890

 Score = 36.1 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
           LF +    I+++        R+R ++   F ++   FGV       +  +  + +    +
Sbjct: 122 LFALALTTIAVLFPP-----RERGRVGGFFGAI---FGVSSAVGPWLGGLLTDHFSWHWV 173

Query: 340 YLFLFCISSIFLLMIKKKYTKI 361
           +     + ++ L  I +   ++
Sbjct: 174 FYINMPVGAVALWFILRYMPRL 195


>gi|47224729|emb|CAG00323.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 673

 Score = 36.1 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 47/161 (29%), Gaps = 4/161 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWV-IQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+   LY +  +    ++       + ++     +++ L  S   SL + L +   LIP+
Sbjct: 245 MQRLPLYFIVNVIIPCMLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPS 304

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF---LAILLSIFLFI 116
               V      M  T V    +    +++I+    S  T   P          +   +F 
Sbjct: 305 TSSAVPLIGKYMLFTMVFVIASIIITVIVINTHHRSPSTHTMPPWIRKVFIETIPNMMFF 364

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL 157
           S      +     +       ++                 +
Sbjct: 365 STMKCPSQEIRQKRLFPTDMDISDISGNPTPTSVTYQSPIV 405


>gi|223936328|ref|ZP_03628240.1| von Willebrand factor type A [bacterium Ellin514]
 gi|223894846|gb|EEF61295.1| von Willebrand factor type A [bacterium Ellin514]
          Length = 657

 Score = 36.1 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 25/97 (25%)

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPE 263
             G V             +     LQ  +  +    L         +L      P  + +
Sbjct: 238 ERGRVDYIRDEQGQPVKSRLNEKLLQEIAEATKGFYLPLRGTKTMDMLYEQGIAPLPKSD 297

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              T    FH+R    L   I  LI+      R   R
Sbjct: 298 KASTLLKRFHERYHWPLSIAIILLIAETFLPDRKRTR 334


>gi|148378894|ref|YP_001253435.1| hypothetical protein CBO0903 [Clostridium botulinum A str. ATCC
           3502]
 gi|153934207|ref|YP_001383275.1| hypothetical protein CLB_0941 [Clostridium botulinum A str. ATCC
           19397]
 gi|153935442|ref|YP_001386824.1| hypothetical protein CLC_0955 [Clostridium botulinum A str. Hall]
 gi|148288378|emb|CAL82455.1| putative membrane protein [Clostridium botulinum A str. ATCC 3502]
 gi|152930251|gb|ABS35751.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152931356|gb|ABS36855.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
          Length = 535

 Score = 36.1 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 32/84 (38%), Gaps = 3/84 (3%)

Query: 274 KRLTQWLFPVIFGL-ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
           K++      +   + ++++         +    + +FI +++   +    +      +  
Sbjct: 3   KKIYSSFIVLSLIISMALIYFLMPVFSVKFYSFYIVFIIIALLLSINVSLNKGKESSKIY 62

Query: 333 PYYIPILYLFLFCISSIFLLMIKK 356
              IP++ + LF +  I  L I +
Sbjct: 63  G--IPVILIGLFIVMFIISLSIFR 84


>gi|195440054|ref|XP_002067874.1| GK12679 [Drosophila willistoni]
 gi|194163959|gb|EDW78860.1| GK12679 [Drosophila willistoni]
          Length = 588

 Score = 36.1 bits (81), Expect = 9.5,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 29/89 (32%)

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
           + +     E H  +  W+  V   LI +        +     I  I + + I     + F
Sbjct: 295 QQVVDVYLETHLSVRVWIMIVTAPLILMCLVRNLKFLTPFSMIANILMFVGIVITFIYMF 354

Query: 323 SYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           S +    E++    P+ +   F      L
Sbjct: 355 SDLPAPAERSGIVSPLQWPLFFGTVIFAL 383


>gi|224106740|ref|XP_002314269.1| predicted protein [Populus trichocarpa]
 gi|222850677|gb|EEE88224.1| predicted protein [Populus trichocarpa]
          Length = 521

 Score = 36.1 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 10/85 (11%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           ++      +  L+   +     +VR+R       I  ++       F  +++        
Sbjct: 388 VSLPFSC-VLALL--SSMISSTMVRRRFVWVYASIQFALIVLFAHIFYTLVNVQAVLAIL 444

Query: 336 IPILYLFLFCISSIFLLMIKKKYTK 360
           +  L  F   +S   +L+   ++ +
Sbjct: 445 LATLSGFGVAMSGSSILVEFLRWRR 469


>gi|294872757|ref|XP_002766397.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239867221|gb|EEQ99114.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 1783

 Score = 35.7 bits (80), Expect = 9.8,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 56/199 (28%), Gaps = 19/199 (9%)

Query: 164 YNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF 223
           Y   +    + I+ +      + + A S     + +     +G++    P    +     
Sbjct: 200 YMDVSNPSELLIMGNATIGDRRQFSAISIDYSENNKFWYGENGDIQHGDPDENGLIYYS- 258

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
               L   +   + +  +  +      L P P N           +      L   L P 
Sbjct: 259 ---ALNFPAFFGAYMDFQRGEHRPIAGLYPVPYNAYSTRSSGSDLKL-----LGNVLGPF 310

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISF----------GVFWGFSYIIHKIEQNP 333
           ++   +   A K    R+ +    + I     F            F+    I+       
Sbjct: 311 LYTFSAFSVARKLISERKGRLREGMRIMGLYDFPYNVSWYLWYVTFYFVFSIVVAALSLI 370

Query: 334 YYIPILYLFLFCISSIFLL 352
               +  L+LF +S ++  
Sbjct: 371 VLPIVSALWLFILSLLYFF 389


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.107    0.238 

Lambda     K      H
   0.267   0.0328    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,463,822,735
Number of Sequences: 14124377
Number of extensions: 37126407
Number of successful extensions: 1393052
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 3872
Number of HSP's successfully gapped in prelim test: 11429
Number of HSP's that attempted gapping in prelim test: 1356158
Number of HSP's gapped (non-prelim): 37496
length of query: 361
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 221
effective length of database: 2,865,380,850
effective search space: 633249167850
effective search space used: 633249167850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 81 (36.1 bits)