RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|255764468|ref|YP_003064806.2| permease protein [Candidatus
Liberibacter asiaticus str. psy62]
(361 letters)
>gnl|CDD|146398 pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family. Members
of this family are predicted integral membrane proteins
of unknown function. They are about 350 amino acids long
and contain about 6 transmembrane regions. They are
predicted to be permeases although there is no
verification of this.
Length = 353
Score = 148 bits (375), Expect = 3e-36
Identities = 83/355 (23%), Positives = 160/355 (45%), Gaps = 13/355 (3%)
Query: 7 YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
YILR + FL+ L ++ + ++ +L+ ++L+ L +L++ L+P++L ++ P
Sbjct: 2 YILREFLKPFLLVLLVLLLLFLLVDLLRLLDLILGGGLPLADILRLLLLLLPSILELILP 61
Query: 67 FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
+ L + R++EL + G S L++PVL LA+LLS+ F+ + P
Sbjct: 62 LALLLAVLLTLGRLARDSELTALRAAGISLKRLLRPVLILALLLSLLSFLLSEYLVPYAN 121
Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDTQTHK 185
++QL A+ L LF R D L I + K +P+ L+G+FI D RD
Sbjct: 122 QKLEQLLAEILSKAPSLLLRPGLFLRDGDGLIIYVKKVDPDGRLLEGVFIYDFRDGGLTS 181
Query: 186 IYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
+ A+S ++D D IL +G ++R +++SI+ F Y + L A+
Sbjct: 182 VITAKSATLDSDPNGGVWILENGTIYRFDKDGEELSILSFDRYEIDLSLTPKDLSSLTAD 241
Query: 244 DQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
+ LS L + YR+E H+RL L ++ L+++ +
Sbjct: 242 PEELSLSELYAYIKRLKASGLDVRKYRAELHRRLALPLSCLVLALLALPLG---LGSPRS 298
Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL-----YLFLFCISSIFLL 352
+ + +++ + F +++ ++ + +N P+L L + LL
Sbjct: 299 GRGAGLVLAILLGF-LYYVLLFLGEALGENGVLPPLLAAWLPNLLFLLLGLYLLL 352
>gnl|CDD|31138 COG0795, COG0795, Predicted permeases [General function prediction
only].
Length = 364
Score = 123 bits (311), Expect = 6e-29
Identities = 81/366 (22%), Positives = 149/366 (40%), Gaps = 12/366 (3%)
Query: 1 MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRIN-LVSSSTESLNILLKISGYLIPT 59
M + Y+LR ++FL L ++ I +I +L+ +N +L + +PT
Sbjct: 1 MMLLDRYLLREYLKTFLAILLVLLAILLIIDLLELLNGKAVDGRYPALDVLLLLLLSLPT 60
Query: 60 VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
+LP+V P + L ++R +EL+++ +G S L++PVL LA+LLS+ F+
Sbjct: 61 LLPLVLPLALLIAALLTLGRLSRESELVVLRASGVSLKRLLRPVLILALLLSLLSFVLGL 120
Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD--LYIKISKYNPNNTLQGIFIVD 177
+ P ++L A+A+ E F+ D + L S N LQG+FI
Sbjct: 121 WLAPWAEQKARELLAQAKAGGPSLGSVEGGFWAKDGNDSLIFIESIDRDGNKLQGVFIKR 180
Query: 178 SRDTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
D + YA G++ + L DG + +P D I+ F YTL
Sbjct: 181 FDDNGRLSVVYAAEGALFELEDGSWILELVDGTRYEGTPKEGDSRIVDFDWYTLLLPDLL 240
Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
+L +LS L N + + +T +E ++RL L + L+++ +
Sbjct: 241 IREALLSPKALSLSELPTYILLNKD-NGQDRKTLLAELYRRLALPLLVLAMALLALPLS- 298
Query: 295 KRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYL--FLFCISSIFL 351
R + + + + + F + +L +F ++L
Sbjct: 299 -LRNPRSGRLGLRLLGGILLGLLFYVLLFLLGALALAGKLPPFLAAWLPNLVFLALGLWL 357
Query: 352 LMIKKK 357
L K++
Sbjct: 358 LRRKER 363
>gnl|CDD|38864 KOG3660, KOG3660, KOG3660, Sodium-neurotransmitter symporter
[Signal transduction mechanisms].
Length = 629
Score = 28.3 bits (63), Expect = 3.1
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 310 ISLSISFGVFWGFSYIIHKIEQNPYYIP-ILYLFLFCISSIFLLMIKKKYTK 360
+ ++ G W F Y+ +K + IP ++ LFLF + FL M ++T
Sbjct: 48 LGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTS 99
>gnl|CDD|38459 KOG3249, KOG3249, KOG3249, Uncharacterized conserved protein
[Function unknown].
Length = 181
Score = 28.5 bits (63), Expect = 3.2
Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 17/130 (13%)
Query: 207 EVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYR----- 261
K P+S MK + LQT + + + + PNP ++
Sbjct: 14 AKAEKGPVST--LKMKLRGKALQTTGDGDDLYITLKDQPSFIVAVIPNPRAESFDDDDDE 71
Query: 262 --PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV--------RQRKKIHPIFIS 311
PE + + ++L + P I+ + S+ ++ R +F
Sbjct: 72 DVPEKQPPSSTRWTRKLNKLKLPDIWLMFSLSLKMWVIVLLWFVLAPIAHRLDFGLVFFL 131
Query: 312 LSISFGVFWG 321
LS+ ++
Sbjct: 132 LSLFSIIYLN 141
>gnl|CDD|38272 KOG3062, KOG3062, KOG3062, RNA polymerase II elongator associated
protein [General function prediction only].
Length = 281
Score = 28.4 bits (63), Expect = 3.2
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 226 YTLQTESANSST---IVLKANDQNLSFLLN---PNPNNPNYRPELLE--TYRSEFHKRLT 277
Y L E+ + T +V A Q L N +P Y ELLE R E
Sbjct: 90 YELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPGEDGYDDELLEALVQRYEEPNSRN 149
Query: 278 QW---LFPVIFGLISIVAADKRALVRQRKKIHP 307
+W LF ++ +I++ D + + K + P
Sbjct: 150 RWDSPLFTLLPDVITLPIDDILKALFENKPLPP 182
>gnl|CDD|38166 KOG2955, KOG2955, KOG2955, Uncharacterized conserved protein
[Function unknown].
Length = 1069
Score = 27.8 bits (61), Expect = 4.9
Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Query: 82 RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII----EPKCRSTIKQLSAKAQ 137
R+ +I G RITL + L ++L + L I ++++ EP+ R+ ++ +
Sbjct: 205 RSAPARLITEDGKIRITLKRTALDSPVILEVQLHILDDVLWVLTEPQLRALLRFATG--- 261
Query: 138 LALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD--SRDTQTHKIYYAQSGSID 195
+ L + + + + + + Y + G+F D SR + ++ S
Sbjct: 262 MYLCLNRSDVDPKSQQACVSDTESANYLTKILIGGLFARDAFSRIPCALNQFSMKATSEH 321
Query: 196 L 196
L
Sbjct: 322 L 322
>gnl|CDD|144075 pfam00344, SecY, eubacterial secY protein.
Length = 340
Score = 27.5 bits (62), Expect = 6.2
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 308 IFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
+ I I + W + + + ILYL L I+++ ++++
Sbjct: 115 LIIFAGIVSSIPWAIINLFSLLSSGGGLLSILYLLLLLIATLAVILL 161
>gnl|CDD|39027 KOG3823, KOG3823, KOG3823, Uncharacterized conserved protein
[Function unknown].
Length = 630
Score = 27.0 bits (59), Expect = 7.6
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 62 PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLS 111
PMV + T+N L R +++ T+ + P L ++LS
Sbjct: 287 PMVLSYVIG--TSNTLFQQKRQLADVLVVIEDTANLDAHDPTLRRQLVLS 334
>gnl|CDD|147024 pfam04664, OGFr_N, Opioid growth factor receptor (OGFr) conserved
region. Opioid peptides act as growth factors in neural
and non-neural cells and tissues, in addition to serving
in neurotransmission/neuromodulation in the nervous
system. The Opioid growth factor receptor is an integral
membrane protein associated with the nucleus. The
conserved region is situated at the N-terminus of the
member proteins with a series of imperfect repeats lying
immediately to its C-terminus.
Length = 214
Score = 26.6 bits (59), Expect = 9.5
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 246 NLSFLLNPNPNNPN--YRPELLETYRS-----EFHKRLTQWLFPVIFG 286
NL F N P +P+ + ++L+ ++ E + QWLFP+
Sbjct: 12 NLRFYKNEIPFDPDGRHIEDILQNWKGNYDLLEHNHSYIQWLFPIREQ 59
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.327 0.141 0.408
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,348,696
Number of extensions: 236619
Number of successful extensions: 1122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1109
Number of HSP's successfully gapped: 62
Length of query: 361
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 266
Effective length of database: 4,210,882
Effective search space: 1120094612
Effective search space used: 1120094612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.1 bits)