RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764468|ref|YP_003064806.2| permease protein [Candidatus
Liberibacter asiaticus str. psy62]
         (361 letters)



>gnl|CDD|130897 TIGR01838, PHA_synth_I, poly(R)-hydroxyalkanoic acid synthase,
           class I.  This model represents the class I subfamily of
           poly(R)-hydroxyalkanoate synthases, which polymerizes
           hydroxyacyl-CoAs with three to five carbons in the
           hydroxyacyl backbone into aliphatic esters termed
           poly(R)-hydroxyalkanoic acids. These polymers accumulate
           as carbon and energy storage inclusions in many species
           and can amount to 90 percent of the dry weight of cell.
          Length = 532

 Score = 27.3 bits (61), Expect = 5.6
 Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 25/84 (29%)

Query: 100 IKPVLFLAILL------SIFLFISENIIEPKCRSTIKQLSAKA-----QLALTFSYLEEN 148
           IK   F   LL       + +F+ E I+        +Q          Q+A+TFS L EN
Sbjct: 292 IKSATFFTTLLDFSDPGELGVFVDEEIV----AGIERQNGGGGYLDGRQMAVTFSLLREN 347

Query: 149 LFFRLDDDLYIKISKYNPNNTLQG 172
                  DL      Y  +N L+G
Sbjct: 348 -------DLIW---NYYVDNYLKG 361


>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase.
          Length = 309

 Score = 27.4 bits (61), Expect = 6.0
 Identities = 13/42 (30%), Positives = 25/42 (59%)

Query: 210 RKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLL 251
           RK  +SK++SI K ++  L+  +A    +++ AN  N + L+
Sbjct: 76  RKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTNALI 117


>gnl|CDD|107039 PHA01519, PHA01519, hypothetical protein.
          Length = 115

 Score = 27.5 bits (60), Expect = 6.0
 Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 253 PNP-NNPNYRPELLETYRSEFHKRLTQW 279
           P+  N+P+    ++E +R     +LT+W
Sbjct: 56  PDYCNDPSASWPIIEKHRISILDQLTEW 83


>gnl|CDD|173163 PRK14700, PRK14700, recombination factor protein RarA; Provisional.
          Length = 300

 Score = 26.9 bits (59), Expect = 9.5
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 151 FRLDDDLYIKISKYNPN------NTLQGIFIVDSRDTQTH 184
           F++DD LY  +  YN        N L+ +F++ +R  + +
Sbjct: 63  FKIDDGLYNAMHNYNEGDCRKILNLLERMFLISTRGDEIY 102


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.327    0.141    0.408 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,713,046
Number of extensions: 364657
Number of successful extensions: 1223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1218
Number of HSP's successfully gapped: 50
Length of query: 361
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 266
Effective length of database: 3,941,713
Effective search space: 1048495658
Effective search space used: 1048495658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.1 bits)