RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|255764468|ref|YP_003064806.2| permease protein [Candidatus
Liberibacter asiaticus str. psy62]
         (361 letters)



>2q9f_A Cytochrome P450 46A1; CYP46A1, monooxygenase, cholesterol
           metabolic enzyme, oxidoreductase, heme, cholesterol-3-
           sulphate; HET: HEM C3S; 1.90A {Homo sapiens} PDB:
           2q9g_A* (A:58-317,A:373-456)
          Length = 344

 Score = 30.9 bits (68), Expect = 0.24
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 270 SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIF 309
           S+ ++ L       +FG   +   +     +QR+ I   F
Sbjct: 1   SKMYRALQTVFGERLFGQGLVSECNYERWHKQRRVIDLAF 40


>3i57_A Mucus binding protein; beta grAsp fold, cell WALL,
           peptidoglycan-anchor, protein binding; 1.80A
           {Lactobacillus reuteri} (A:)
          Length = 185

 Score = 28.6 bits (63), Expect = 1.4
 Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + QT ++ + ++G +D     +    G+ +  S   K ++      Y         S+  
Sbjct: 112 EDQTAQVTFTRNGVLDDVTGIVA--WGKWNEASQSYKALTSPTIAGYAPSEAVVKRSSNS 169

Query: 240 LKANDQNLSFLLNPNP 255
                  L+ +   + 
Sbjct: 170 DAEQGPTLTVIYTADA 185


>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2,
           protein structure initiative, northeast structural
           genomics consortium, NESG; NMR {Allochromatium vinosum}
           (A:1-41,A:90-125)
          Length = 77

 Score = 28.1 bits (62), Expect = 1.7
 Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 1/22 (4%)

Query: 241 KANDQNLSFLLNPNPNNPNYRP 262
           +       F+   NP +P YRP
Sbjct: 53  ELEPGQFHFIFL-NPRDPTYRP 73


>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron
           tomography, contractIle protein/transport protein
           complex; 24.00A {Gallus gallus} (A:1-67)
          Length = 67

 Score = 27.4 bits (61), Expect = 2.8
 Identities = 8/30 (26%), Positives = 10/30 (33%)

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNP 253
           K   L+ E        L    + L  L NP
Sbjct: 36  KVLQLRLEEGKDLEYCLDPKTKELPPLRNP 65


>2owl_A Recombination-associated protein RDGC; replication, RECA;
           2.40A {Escherichia coli} (A:)
          Length = 303

 Score = 26.2 bits (58), Expect = 6.1
 Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKY 164
            +LAL +   ++ + F   DD  +K  K+
Sbjct: 230 TKLALDW---QQRIQFVXCDDGSLKRLKF 255


>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
           genomics, NPPSFA, national project on protein structural
           and functional analyses; 2.20A {Aeropyrum pernix}
           (A:233-338)
          Length = 106

 Score = 26.0 bits (57), Expect = 6.8
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 160 KISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEV 208
           K+SK  P      +F+VDS D    KI  A   +  +    ++     +
Sbjct: 6   KMSKSKPETA---VFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYI 51


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.327    0.141    0.408 

Gapped
Lambda     K      H
   0.267   0.0361    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,532,453
Number of extensions: 108369
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 20
Length of query: 361
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 271
Effective length of database: 1,913,599
Effective search space: 518585329
Effective search space used: 518585329
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (26.0 bits)