BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|255764469|ref|YP_003064807.2| putative permease protein
[Candidatus Liberibacter asiaticus str. psy62]
(361 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|255764469|ref|YP_003064807.2| putative permease protein [Candidatus Liberibacter asiaticus str.
psy62]
gi|254547820|gb|ACT56867.2| putative permease protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 361
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/361 (100%), Positives = 361/361 (100%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP
Sbjct: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI
Sbjct: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT
Sbjct: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF
Sbjct: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR
Sbjct: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED
Sbjct: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
Query: 361 G 361
G
Sbjct: 361 G 361
>gi|315122194|ref|YP_004062683.1| putative permease protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495596|gb|ADR52195.1| putative permease protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 321
Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust.
Identities = 216/322 (67%), Positives = 271/322 (84%), Gaps = 1/322 (0%)
Query: 40 MGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW 99
M ELP YS SRGA+L+ TR+PLIIQQ IPFI+L+V+++VFFNLNRT+ELVI+RA+G+SIW
Sbjct: 1 MSELPGYSTSRGAMLSVTRLPLIIQQTIPFISLIVSMIVFFNLNRTNELVITRAVGVSIW 60
Query: 100 QLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ 159
QLL+PF GS LLG+FT+LVINP+A SGEK+GI ++ W+ + D++ +IIPW+ I N +
Sbjct: 61 QLLSPFTTGSFLLGMFTILVINPMAVSGEKMGISMVNNWRTH-DQKTLEIIPWIHIENKK 119
Query: 160 QDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI 219
+D FIGAKKILPE +I EDFT IT++K+N I R+DA AI+ + + LK+VVEY+YG +
Sbjct: 120 EDFFIGAKKILPEKNILEDFTFITVNKENDTIFRQDAHFAIVQKNNIYLKEVVEYKYGAL 179
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
P+ KNST LNI IKM+ FQKF+EQF S SFYEIIKK+ FS++S++F NY +ETQFYF+I
Sbjct: 180 PVFKNSTILNIAIKMNYFQKFTEQFTSHSFYEIIKKVIFSHQSSVFRNYFSETQFYFMIS 239
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
IP MLVAMTLIAA+VSLEF+RSNQPRIIV YG+ +GFMLYTIIT+MKSFGKSGILLP AA
Sbjct: 240 IPFMLVAMTLIAAAVSLEFNRSNQPRIIVTYGVCAGFMLYTIITLMKSFGKSGILLPFAA 299
Query: 340 ALIPVILTISLSILILLQKEDG 361
ALIP+I I LSI ILL+KEDG
Sbjct: 300 ALIPIISIICLSIFILLKKEDG 321
>gi|218460846|ref|ZP_03500937.1| putative permease protein [Rhizobium etli Kim 5]
Length = 362
Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 148/362 (40%), Positives = 219/362 (60%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ YL TT +FL+GA + F++D +E +M LP Y+I G V+ A R+P
Sbjct: 2 MFGTLSRYFFRRYLATTAWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ IPF+ L V + V LNR ELV++RA GIS+WQ + PFV GS+ LG+ T +
Sbjct: 62 LILQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFVAGSLALGVLTTTAL 121
Query: 121 NPIATSGEKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ +N +K+ IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLVDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGRVIMRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + KS ETQF L+ PL+LVAMTLIAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|325292486|ref|YP_004278350.1| permease protein [Agrobacterium sp. H13-3]
gi|325060339|gb|ADY64030.1| putative permease protein [Agrobacterium sp. H13-3]
Length = 362
Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 142/358 (39%), Positives = 219/358 (61%), Gaps = 2/358 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYF K YL T ++FLLG ++++ D +E +M +P YS+ L A R+PLI+Q
Sbjct: 6 LARYFLKRYLITAIWFLLGVSAIIYLADFSETARRMSSVPGYSVPGALGLTALRLPLILQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q IPFI L V + +LNR ELV++RA G+S WQ + PFV+G++ LGI +VLV+NPIA
Sbjct: 66 QTIPFIALFVGMTTLISLNRRYELVVTRAAGVSAWQFILPFVLGAVFLGILSVLVLNPIA 125
Query: 125 TSGEKIGIDLIQQWKDNGD-KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G+ + + W++ G ++ DIIPWM+ S+ QD IGAK + D I
Sbjct: 126 AWGQNRSLSMEAGWRNEGSGGRQQDIIPWMRQSSGGQDTIIGAKSFEDNGTMLLDVVLIH 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+DK I+ R+DA A + + L V E + G +P+ + ST ++ ++ + Q+ Q
Sbjct: 186 LDKDGNIVSRQDAKSAKLEDGYWLLNGVAETRAGHVPVRQESTRISTNLRREFVQERMTQ 245
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ +F+++ K+ + KS + ETQ++FL+ PL+LVAMTLIAA+VSL+FSR Q
Sbjct: 246 TETVAFFDLSHKIEVA-KSFGLSSKALETQYHFLLSTPLLLVAMTLIAATVSLKFSRFAQ 304
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
R ++ GI SGF+LY + ++++FG G++ P A +PVI+ ++L ILL +EDG
Sbjct: 305 SRSVILGGIVSGFVLYVVTVLVRAFGSGGVVPPTVAVWVPVIVALALGATILLHQEDG 362
>gi|86357091|ref|YP_468983.1| putative permease protein [Rhizobium etli CFN 42]
gi|86281193|gb|ABC90256.1| putative permease protein [Rhizobium etli CFN 42]
Length = 362
Score = 275 bits (704), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 147/362 (40%), Positives = 220/362 (60%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ YL TT +FL+GA + F++D +E +M LP Y+I G V+ A R+P
Sbjct: 2 MFGTLSRYFFRRYLATTGWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ IPF+ L V + V LNR ELV++RA GIS+WQ + PF+ GS++LG+ T +
Sbjct: 62 LILQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLVLGVLTTTAL 121
Query: 121 NPIATSGEKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ +N +K+ IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + KS ETQF L+ PL+LVAMTLIAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|327188011|gb|EGE55241.1| putative permease protein [Rhizobium etli CNPAF512]
Length = 362
Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 147/362 (40%), Positives = 219/362 (60%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ YL TT +FL+GA + F++D +E +M LP Y+I G V+ A R+P
Sbjct: 2 MFGTLSRYFFRRYLATTGWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ IPF+ L V + V LNR ELV++RA GIS+WQ + PF+ GS+ LG+ T +
Sbjct: 62 LILQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGVLTTTAL 121
Query: 121 NPIATSGEKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ +N +K+ IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + KS ETQF L+ PL+LVAMTLIAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|190891135|ref|YP_001977677.1| permease [Rhizobium etli CIAT 652]
gi|190696414|gb|ACE90499.1| putative permease protein [Rhizobium etli CIAT 652]
Length = 362
Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 146/362 (40%), Positives = 219/362 (60%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ Y+ TT +FL+GA + F++D +E +M LP Y+I G V+ A R+P
Sbjct: 2 MFGTLSRYFFRRYVATTGWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ IPF+ L V + V LNR ELV++RA GIS+WQ + PF+ GS+ LG+ T +
Sbjct: 62 LILQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGVLTTTAL 121
Query: 121 NPIATSGEKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ +N +K+ IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + KS ETQF L+ PL+LVAMTLIAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|241203948|ref|YP_002975044.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240857838|gb|ACS55505.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 362
Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 219/362 (60%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ YL TT +FL+G + F++D +E +M LP Y+I G ++ A R+P
Sbjct: 2 MFGTLSRYFFRRYLVTTGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGVLMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ +PFI L V + V LNR ELV++RA GIS+WQ + PF+ GS++LG+ T+ +
Sbjct: 62 LILQQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLVLGLLTMAAL 121
Query: 121 NPIATSGEKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ +N +K+ IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQESGTKLIDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGQVILRQDAATAKLEDGYWQLNNVVERKPGEIPVRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + KS ETQF L+ PL+LVAMT IAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTFIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|222085452|ref|YP_002543982.1| permease protein [Agrobacterium radiobacter K84]
gi|221722900|gb|ACM26056.1| permease protein [Agrobacterium radiobacter K84]
Length = 361
Score = 269 bits (688), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 143/357 (40%), Positives = 214/357 (59%), Gaps = 1/357 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF Y+ TTL+F LG LV++ID +E ++ LP Y++ G ++ A R+P I+Q
Sbjct: 6 LGRYFFTRYIITTLWFFLGVTSLVYLIDFSETAGRLAGLPGYTVKIGLLMTAVRLPFIMQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +PFI L V + V LNR ELVI+RA GIS+WQ + PFVVG+ +G+ T+L +NP+A
Sbjct: 66 QTVPFIALFVGMTVLIALNRRRELVIARAAGISVWQFMTPFVVGAFCVGLLTMLALNPVA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G++ + + + + + IPW++ S+ + DI IGAK +L + I
Sbjct: 126 AWGQRQAETMEADLRGDPSYRNTLSIPWLRQSDGKSDIIIGAKAVLDNGTTLMNVVFIHF 185
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D + II R+DA A + N L VVE G IP K++T + +K D + Q
Sbjct: 186 DSQGNIILRQDAQSAKLENGYWLLNSVVERAPGEIPAHKSTTQVRTNLKQDFVSERLAQP 245
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ +FY++ +++ + KS ETQF+ L+ P +LVAMTLIAA+VSL+FSR NQ
Sbjct: 246 ETIAFYDLSNRIAIA-KSFGISTKALETQFHSLLSQPFLLVAMTLIAATVSLKFSRFNQS 304
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
R ++ GI SGF+LY + ++K+FG SG++ P A IPVI+ ++ ILL +EDG
Sbjct: 305 RSVILGGILSGFVLYVVTVLVKAFGSSGVVPPFVATWIPVIVALAFGATILLHQEDG 361
>gi|116251334|ref|YP_767172.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115255982|emb|CAK07063.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 362
Score = 269 bits (687), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 218/362 (60%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ YL TT +FL+G + F++D +E +M LP Y+I G ++ A R+P
Sbjct: 2 MFGTLSRYFFRRYLVTTGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGVLMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ +PFI L V + V LNR ELV++RA GIS+WQ + PF+ GS+ LG+ T+ +
Sbjct: 62 LILQQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGLLTMAAL 121
Query: 121 NPIATSGEKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ +N +K+ IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGQVILRQDAATAKLEDGYWQLNTVVERKPGEIPVRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + KS ETQF L+ PL+LVAMT IAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTFIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|15888447|ref|NP_354128.1| hypothetical protein Atu1107 [Agrobacterium tumefaciens str. C58]
gi|15156139|gb|AAK86913.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 362
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 139/358 (38%), Positives = 218/358 (60%), Gaps = 2/358 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYF K YL TT++F+LG ++++ D +E +M LP YS+ L A R+PLI+Q
Sbjct: 6 LARYFLKRYLMTTIWFVLGVSSIIYLADFSETARRMSGLPGYSVPAALGLTALRLPLILQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +PFI L V + +LNR ELV++RA GIS WQ + PFV+G++ +GI +V+V+NPIA
Sbjct: 66 QTVPFIALFVGMTTLISLNRRYELVVTRAAGISAWQFILPFVLGAVFIGILSVMVLNPIA 125
Query: 125 TSGEKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G+ + + + D G ++ +IIPWM+ S+ +D IGAK + D I
Sbjct: 126 AWGQNKSLAMEAGLRNDAGGGRQQEIIPWMRQSSGGKDTIIGAKSFEDNGTMLLDVVLID 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+DK I+ RKDA A + + L V E + G +P+ + S ++ ++ + Q+ Q
Sbjct: 186 VDKDGNIVSRKDAKSAKLEDGYWLLNGVSETRAGHVPVRQESMQISTNLRREFVQERMTQ 245
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ +F+++ K+ + KS + ETQ++FL+ PL+LVAMTLIAA+VSL+FSR Q
Sbjct: 246 TETVAFFDLSHKIEVA-KSFGLSSKALETQYHFLLSTPLLLVAMTLIAATVSLKFSRFAQ 304
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
R ++ GI SGF+LY + ++++FG G++ P A +PVI+ ++L ILL +EDG
Sbjct: 305 SRSVILGGIVSGFVLYVVTVLVRAFGSGGVVPPTVAVWVPVIVALALGATILLHQEDG 362
>gi|15964906|ref|NP_385259.1| hypothetical protein SMc00583 [Sinorhizobium meliloti 1021]
gi|307300976|ref|ZP_07580745.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
gi|307317711|ref|ZP_07597149.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
gi|15074085|emb|CAC45732.1| Hypothetical, transmembrane protein [Sinorhizobium meliloti 1021]
gi|306896473|gb|EFN27221.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
gi|306903931|gb|EFN34517.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
Length = 360
Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 142/357 (39%), Positives = 214/357 (59%), Gaps = 2/357 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFFK Y +TT +FL+G L+F+ID +E+ ++M LP+Y++S ++ R+P I+Q
Sbjct: 6 LGRYFFKRYARTTFWFLVGIFALIFIIDFSELTSRMSNLPHYTVSGALLMTTFRIPTILQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +PF+ L + +LNR ELV++RA GIS+WQ L PFVVG++L G+ V+VINP+A
Sbjct: 66 QTVPFVALFAAMAALISLNRRYELVVTRAAGISVWQFLRPFVVGALLFGVLAVVVINPLA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G K L +W ++ IPW++ D IGA+ + + T I
Sbjct: 126 AWGTKKAEALEAEWGST-RSAAANSIPWLRQIYDGTDTIIGARSVQNGGTELINVTVIHF 184
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D + I R+DA A + + L VVE + GR+P + L +K D Q+ +
Sbjct: 185 DPQGAITLRQDAKSAKLEDGYWLLNGVVETEVGRLPRRMETAQLRTNLKPDFVQERLAKA 244
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S F+++ +K+ + +S F ETQF+ L+ +PL+LVAMTLIAA VSL+FSR NQ
Sbjct: 245 DSIQFFDLPRKIEVA-RSFGFSTNGLETQFHSLMSLPLLLVAMTLIAACVSLKFSRFNQS 303
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
R ++ GI SGF+LY + ++K+FG SGI+ P AA +PV++ ++L ILL +EDG
Sbjct: 304 RSVILGGILSGFVLYVVTVLVKAFGSSGIVPPFVAAWLPVVVAMALGSTILLHQEDG 360
>gi|209548670|ref|YP_002280587.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534426|gb|ACI54361.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 362
Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 217/362 (59%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ Y+ T +FL+G + F++D +E +M LP Y+I G ++ A R+P
Sbjct: 2 MFGTLSRYFFRRYMVTMGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGILMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ +PFI L V + V LNR ELV++RA GIS+WQ + PF+ GS++LG+ T+ +
Sbjct: 62 LILQQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLILGLLTMTAL 121
Query: 121 NPIATSGEKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ +N +K+ IPW++ + + D+ IGA + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAHTVQENGTKLIDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGQVILRQDAATAKLEDGYWQLNNVVERKPGEIPMRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + KS ETQF L+ PL+LVAMT IAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTFIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IP+I+ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPMIVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|150395988|ref|YP_001326455.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
gi|150027503|gb|ABR59620.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
Length = 360
Score = 261 bits (668), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 140/357 (39%), Positives = 213/357 (59%), Gaps = 2/357 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFFK Y +TT +FL+G L+F+ID +E+ ++M LP+Y++S ++ R+P I+Q
Sbjct: 6 LGRYFFKRYARTTFWFLIGIFALIFIIDFSELTSRMSNLPHYTVSGALLMTTFRIPTILQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +PF+ L + +LNR ELV++RA GIS+WQ L PFVVG+++ G V+VINP+A
Sbjct: 66 QTVPFVALFAAMAALISLNRRYELVVTRAAGISVWQFLRPFVVGALIFGALAVVVINPLA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G K L +W ++ IPW++ D IGA+ + + T I
Sbjct: 126 AWGTKKAEALEAEWGST-RSAAANSIPWLRQIYDGTDTIIGARSVQNGGTELINVTVIHF 184
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D + I R+DA A + + L VVE + GR+P + L ++ D Q+ +
Sbjct: 185 DPQGAITLRQDAKSAKLEDGYWLLNGVVETEVGRLPRRMETAQLRTNLRPDFVQERLAKA 244
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S F+++ +K+ + +S F ETQF+ L+ +PL+LVAMTLIAA VSL+FSR NQ
Sbjct: 245 DSIQFFDLPRKIEVA-RSFGFSTNGLETQFHSLMSLPLLLVAMTLIAACVSLKFSRFNQS 303
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
R ++ GI SGF+LY + ++K+FG SGI+ P AA +PV++ ++L ILL +EDG
Sbjct: 304 RSVILGGILSGFVLYVVTVLIKAFGSSGIVPPFVAAWLPVVVAMALGSTILLHQEDG 360
>gi|218672883|ref|ZP_03522552.1| putative permease protein [Rhizobium etli GR56]
Length = 340
Score = 252 bits (643), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 137/340 (40%), Positives = 204/340 (60%), Gaps = 2/340 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ YL TT +FL+G + F++D +E +M LP Y+I G V+ A R+P
Sbjct: 2 MFGTLSRYFFRRYLATTGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ IPFI L V + V LNR ELV++RA GIS+WQ + PF+ GS+ LG+ T+ +
Sbjct: 62 LILQQTIPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGLLTMTAL 121
Query: 121 NPIATSGEKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ +N +K+ IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLVDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + KS ETQF L+ PL+LVAMTLIAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A
Sbjct: 301 RFNQSRPVILGGILSGFMLYVITVLVKAFGSSGVVPPFVA 340
>gi|227821475|ref|YP_002825445.1| permease YjgP/YjgQ family protein [Sinorhizobium fredii NGR234]
gi|227340474|gb|ACP24692.1| permease YjgP/YjgQ family protein [Sinorhizobium fredii NGR234]
Length = 360
Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 138/357 (38%), Positives = 210/357 (58%), Gaps = 2/357 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFFK Y+ TT +FL+G L+F+ID +E+ ++M LP+Y++S ++ R+P I+Q
Sbjct: 6 LGRYFFKRYIVTTFWFLVGIFALIFIIDFSELASRMSALPHYTVSGALLMTTFRIPTILQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +PF+ L + +LNR ELV++RA GIS+WQ L PFV+G+ L+G+ V+ +NP+A
Sbjct: 66 QTVPFVALFSAMAALISLNRRYELVVTRAAGISVWQFLRPFVLGAFLVGVLAVVALNPLA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G K L +W + +S IPW++ D IGA+ + + T I
Sbjct: 126 AWGTKRAEALEAEWGSS-RSAQSSSIPWLRQIYDGTDTIIGARSVQNGGTELINVTVIHF 184
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D + I R+DA A + + L V E GR+P + L +K D Q+ +
Sbjct: 185 DPQGTITLRQDAKSAKLEDGYWLLNGVTESGNGRLPRRLETVQLRTNLKADFVQERLAKA 244
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S F+++ K+ + +S F ETQ + L+ +PL+LVAMTLIAA VSL+FSR NQ
Sbjct: 245 DSIQFFDLPHKIEVA-RSFGFSTDAMETQLHSLLSLPLLLVAMTLIAACVSLKFSRFNQS 303
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
R ++ GI SGF+LY + ++K+FG SGI+ P AA +PV++ ++L ILL +EDG
Sbjct: 304 RSVILGGILSGFVLYVVTVLVKAFGSSGIVPPFVAAWLPVVVAMALGSTILLHQEDG 360
>gi|222148152|ref|YP_002549109.1| hypothetical protein Avi_1542 [Agrobacterium vitis S4]
gi|221735140|gb|ACM36103.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 362
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/362 (37%), Positives = 210/362 (58%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RYF K Y T +F++G ++F+ID +E+ + + S+ +L R+P
Sbjct: 2 MLNTLSRYFLKRYAITVFWFVIGVAAIIFLIDFSEVSGRFSDNEQSSLFGVFLLTLMRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L++QQ +PFI L +V LNR SELVI+RA GIS+WQ + PF++G+ +LG T L+I
Sbjct: 62 LLLQQTVPFIALFSGMVTLITLNRRSELVIARAAGISVWQFMFPFLLGAFMLGCATSLLI 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKS-DIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G+K L ++ D G + + +PWM+ ++D IGA +L + +
Sbjct: 122 NPLAALGQKQAATLEAEYSDPGKASNNKNSVPWMRQITGKEDTIIGATSVLEDGTLLMQA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D + +I R+DA A + + LK VVE + G P + S ++ +K + Q+
Sbjct: 182 VFIHFDGQGRITSRQDARTAKLQDGYWLLKDVVETKPGETPKRETSAQVSTNLKQEFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + +FYE+ +K++ + KS ETQF+ L+ P + VAMTLIAA+VSL+FS
Sbjct: 242 RLAQPDTVAFYELSQKIAVA-KSYGVSTKNLETQFHTLLSTPFLFVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGF+LY ++K+FG SG++ P A +PVI+ +L ILL +E
Sbjct: 301 RFNQSRSVILGGIISGFVLYVATVLVKAFGSSGVVPPFVATWVPVIVATALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|218679276|ref|ZP_03527173.1| permease YjgP/YjgQ family protein [Rhizobium etli CIAT 894]
Length = 312
Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 188/312 (60%), Gaps = 2/312 (0%)
Query: 51 GAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI 110
G ++ A R+PLI+QQ +PFI L V + V LNR ELV++RA GIS+WQ ++PF+ GS+
Sbjct: 2 GILMTAVRLPLILQQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMSPFIAGSL 61
Query: 111 LLGIFTVLVINPIATSGEKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKI 169
LLGI T+ +NP+A G++ + + W+ +N +K+ IPW++ + + D+ IGA +
Sbjct: 62 LLGILTMTALNPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAHTV 121
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
D I D ++I R+DA A + + +L VVE + G IP+ K S L
Sbjct: 122 QENGTKLIDAVLIHFDSSGQVILRQDAATAKLEDGYWQLNNVVERKPGEIPVRKASVQLR 181
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+K D Q+ + F+++ +++ + KS ETQF L+ PL+LVAMT
Sbjct: 182 TNLKQDFVQERLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTF 240
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
IAA+VSL+FSR NQ R ++ GI SGF+LY I ++K+FG SG++ P A IPV++ ++
Sbjct: 241 IAATVSLKFSRFNQSRSVILGGILSGFVLYVITVLVKAFGSSGVVPPFVATWIPVVVALA 300
Query: 350 LSILILLQKEDG 361
L ILL +EDG
Sbjct: 301 LGATILLHREDG 312
>gi|319408319|emb|CBI81972.1| conserved membrane hypothetical protein [Bartonella schoenbuchensis
R1]
Length = 363
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 124/363 (34%), Positives = 196/363 (53%), Gaps = 11/363 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF Y+KTT YF+L IL +ID E ++ LP+Y+ +++A RVP I+Q
Sbjct: 6 LGRYFFVRYIKTTCYFVLSIFILALLIDFTENSGRLASLPHYTAKGALLISALRVPFIMQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+ PFI L + + +LN+ ELV++R+IG+S WQ L P +G+ L G+F++L INP+A
Sbjct: 66 QLFPFIALFSAMTMLISLNKKFELVVARSIGVSAWQFLIPACLGAFLFGLFSILFINPLA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQK--SDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
G +I +W+ N + + IPW+ IGA+ I + D T +
Sbjct: 126 AWGSSQAEKMIAEWRSNNVQTSINKNRIPWLTQHTNLGTTTIGARSITQQGLSLIDATFV 185
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + + A A + ND L Y+ G +P + +K + ++
Sbjct: 186 QYNDNATVKNWIHAKQATLTNDAWLLTNGTIYKTGYVPEKFTEFRIKTNLKPEFLTEYLA 245
Query: 243 QFASRSFYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
A+ FY++ +K+ SF +N F Y LI +P +LVAMTLIAA+VSL+F
Sbjct: 246 DPATIPFYKLPRKISAARSFGYSANKFDMYLQS-----LIALPALLVAMTLIAATVSLKF 300
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R Q + ++ G+ +GFMLY I ++++FG +G + PV AA PV++ + + LL K
Sbjct: 301 TRFGQSKALILGGVIAGFMLYVISVLVQAFGNAGYIPPVIAAWTPVVIALFFGVSFLLHK 360
Query: 359 EDG 361
EDG
Sbjct: 361 EDG 363
>gi|121601841|ref|YP_988822.1| YjgP/YjgQ permease [Bartonella bacilliformis KC583]
gi|120614018|gb|ABM44619.1| putative permease, YjgP/YjgQ family [Bartonella bacilliformis
KC583]
Length = 363
Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 131/364 (35%), Positives = 194/364 (53%), Gaps = 11/364 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYFF YL+ T YFLLGA IL F+ID E +++ LP+Y+ +++ R+PLI+
Sbjct: 5 ILGRYFFIQYLRITCYFLLGAFILAFLIDFIENSSRLTSLPHYTTKGALLISFLRIPLIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+ PFI L I + +LNR ELVI+R+IG+S WQ L P G+ LG+ + + NP
Sbjct: 65 QQLFPFIALFSAITMLISLNRKFELVIARSIGVSAWQFLMPACFGAFFLGLVAIFLFNPF 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQK--SDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A G +I +W N + + IPW IGAK I E +
Sbjct: 125 AAWGYSQAEKIIAEWHSNNVQTSLNNHRIPWFTQHTDLGTTTIGAKSITDEGLSLINAIF 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I + A A + N L Y+ G IP + +K + ++
Sbjct: 185 VQYNEDATIKNWIHAQKATLTNSAWFLTHGTIYKTGHIPEKFAEFWIETNLKPEFLTEYL 244
Query: 242 EQFASRSFYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
A+ SFY++ KK+ SF +N F Y LI +P +LVAMTLIAA+VSL+
Sbjct: 245 ADPATTSFYKLPKKIAVARSFGYSANKFDMYLQS-----LIALPALLVAMTLIAATVSLK 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F+R Q ++ G+ +GF+LY I ++++FG +G + P+ AA +PVI+ + L I LL
Sbjct: 300 FTRLEQSGKLILSGVIAGFVLYVISVLVRAFGNAGYIPPIIAAWVPVIIALFLGISFLLH 359
Query: 358 KEDG 361
KEDG
Sbjct: 360 KEDG 363
>gi|319784424|ref|YP_004143900.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317170312|gb|ADV13850.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 360
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 198/366 (54%), Gaps = 19/366 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF Y+ T++F +G + LVF+ID E+ + LP ++ ++ R+P+I+
Sbjct: 5 LGRYFFFRYVTITIWFFIGLLALVFLIDFTELSGRTTGLPGFTYGTAVAISGLRMPMIML 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +PF+ L + +LNR ELVI+R+ G+S WQ L P +G++L G+ +V VINP+A
Sbjct: 65 QTVPFVGLFSAMATLVSLNRRYELVIARSAGVSAWQFLLPCCIGALLFGVLSVGVINPLA 124
Query: 125 TSGEKIGIDLIQQWKDN-GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ Q + + +D PW++ D IGA+ IL + D
Sbjct: 125 AHAFSWSEQIETQLRSGKSNTVSADAAPWIRQKTSSGDTIIGARAILNQGLEMADVVFFI 184
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+D + I+ RKDA A + + +L+ V +Q G I + S T +P + +F ++
Sbjct: 185 LDPQGNIVERKDAARAFLRDGYWELQDVKTFQNGTI---QASATDRVPTNLK--PEFVQE 239
Query: 244 FASR----SFYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+R FY++ K+ SF K+N F QF L+ +P +LVAMTLIAA+VS
Sbjct: 240 RLARPETIPFYDLPGKIEVARSFGLKANAF-----AMQFDSLVALPFLLVAMTLIAATVS 294
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ F+R Q ++ GI +GF+LY + ++K+FG +G + V AA +PV++ + + L
Sbjct: 295 MRFARMGQSATMILGGIIAGFLLYVVSVLVKAFGVAGFVPTVVAAWVPVMVAMFFGVTFL 354
Query: 356 LQKEDG 361
L KEDG
Sbjct: 355 LYKEDG 360
>gi|13476525|ref|NP_108095.1| hypothetical protein mll7865 [Mesorhizobium loti MAFF303099]
gi|14027286|dbj|BAB54240.1| mll7865 [Mesorhizobium loti MAFF303099]
Length = 360
Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 118/366 (32%), Positives = 198/366 (54%), Gaps = 19/366 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF Y+ T++F LG + LVF+ID E+ + LP ++ ++ R+P+I+
Sbjct: 5 LGRYFFFRYVTITIWFFLGLLALVFLIDFTELSGRTTGLPGFTYGTAVAISGLRMPMIML 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +PF+ L + +LNR ELVI+R+ G+S WQ L P +G++L G +V +INP+A
Sbjct: 65 QTVPFVGLFSAMATLVSLNRRYELVIARSAGVSAWQFLLPCCIGALLFGFVSVGLINPLA 124
Query: 125 TSGEKIGIDLIQQWKDN-GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + Q + + +D PW++ D IGA+ IL + D
Sbjct: 125 AHAFSLSEQIETQLRSGKSNTVSADAAPWIRQKTSTGDTIIGARAILNQGLEMSDAVFFV 184
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+D++ I+ RKDA A + + +L+ V ++ G I + S + +P + +F ++
Sbjct: 185 LDQQGNIVERKDAAHAYLRDGYWELQDVKTFRNGTI---QPSASDRVPTNLK--PEFVQE 239
Query: 244 FASR----SFYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+R FY++ K+ SF K+N F QF L+ +P +LVAMTLIAA+VS
Sbjct: 240 RLARPETIPFYDLPGKIEVARSFGLKANAF-----AMQFDSLVALPFLLVAMTLIAATVS 294
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ F+R Q ++ G+ +GF+LY + ++K+FG +G + AA +PV++ + + L
Sbjct: 295 MRFARMGQSATMILGGVVAGFLLYVVSVLVKAFGVAGFVPTAIAAWVPVVVAMFFGVTFL 354
Query: 356 LQKEDG 361
L KEDG
Sbjct: 355 LYKEDG 360
>gi|319404055|emb|CBI77643.1| conserved membrane hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 363
Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 121/359 (33%), Positives = 197/359 (54%), Gaps = 3/359 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF YLKT +FLLG ILV +ID E +++ LP+Y+ +++ R+PLI+Q
Sbjct: 6 LGRYFFMLYLKTVCFFLLGVFILVLLIDFTENSSKLALLPHYTAKGAFLISLLRIPLIMQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+ PFI L I + +LN+ ELV++R+IGIS WQ L P G+ L G+F++L INP+A
Sbjct: 66 QLFPFIALFSAITMLISLNKKLELVVARSIGISAWQFLAPACFGAFLFGLFSILFINPLA 125
Query: 125 TSGEKIGIDLIQQWKDNGDK-QKSDI-IPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+I +W+ N + +D IPW+ I +GAK I+ ++ D T +
Sbjct: 126 AWSSSQAKKMIAEWRSNSAQISTTDTRIPWLTQHTNLGRITVGAKSIIYQDLSLIDATFV 185
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
++ + + + A + + L Y+ G+ P + +K + ++
Sbjct: 186 QYNENATVKNWINTKKATLTDGAWLLTNGTIYKIGQTPEKFTELRIKTHLKPEFLTEYLT 245
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ FY + KK++ + N + + LI +P++LVAMTLIAA+VSL+ R
Sbjct: 246 DPITIPFYTLPKKIAVARSLGYSAN-KFDMHLQSLIALPMLLVAMTLIAATVSLKIPRFG 304
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q R ++ G+ +GF+LY I +++SFG +G + P+ AA +PVI+ + +I LL EDG
Sbjct: 305 QSRTLILGGVIAGFILYVISMLVQSFGNAGYIPPIIAAWVPVIVALFFAISFLLYTEDG 363
>gi|319407067|emb|CBI80704.1| conserved membrane hypothetical protein [Bartonella sp. 1-1C]
Length = 363
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/359 (33%), Positives = 195/359 (54%), Gaps = 3/359 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF YLKT +FLLG ILV +ID E +++ LP+Y+ +++ R+PLI+Q
Sbjct: 6 LGRYFFMLYLKTVCFFLLGVFILVLLIDFTENSSKLAFLPHYTAKGAFLISLLRIPLIMQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+ PFI L I + +LN+ ELV++R+IGIS WQ L P G+ L G+F++L INP+A
Sbjct: 66 QLFPFIALFSAITMLISLNKKLELVVARSIGISAWQFLAPACFGAFLFGLFSILFINPLA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQK--SDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+I +W+ N + IPW+ I +GAK I+ ++ D T +
Sbjct: 126 AWSSFQAEKMIAEWRSNNAQTSITGTRIPWLTQHTNLGRITVGAKSIIYQDLSLIDATFV 185
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
++ + + + A + + L Y+ G+ P + +K + ++
Sbjct: 186 QYNENATVKNWINTKKATLTDGAWLLTNGTIYKIGQTPEKFTELRIKTHLKPEFLTEYLT 245
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ FY + KK++ + N + + LI +P++LVAMTLIAA+VSL+ R
Sbjct: 246 DPITIPFYNLPKKIAVARSLGYSAN-KFDMHLQSLIALPMLLVAMTLIAATVSLKIPRFG 304
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q R ++ G+ +GF+LY I +++SFG +G + P+ AA +PVI+ + +I LL EDG
Sbjct: 305 QSRTLILGGVIAGFILYVISMLVRSFGNAGYIPPIIAAWVPVIVALFFAISFLLYTEDG 363
>gi|319405492|emb|CBI79111.1| conserved membrane hypothetical protein [Bartonella sp. AR 15-3]
Length = 363
Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/359 (34%), Positives = 198/359 (55%), Gaps = 3/359 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF YLKTT FLLG ILV +ID E +++ LP Y+ +++ R PLIIQ
Sbjct: 6 LGRYFFMLYLKTTCCFLLGVFILVLLIDFTENFSKLALLPYYTAKGAFLISLLRTPLIIQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+ PFI L I + +LN+ ELVI+R+IGIS WQ L P G+ L G+F++L INP+A
Sbjct: 66 QLFPFIALFSAITMLISLNKRLELVIARSIGISAWQFLTPACFGAFLFGLFSILFINPLA 125
Query: 125 TSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
++ W+ N ++ + IPW+ IGAK I+ ++ D T +
Sbjct: 126 AWSSSQSEKIVAAWRSNNNQISISNTRIPWLTQHTNLGRTTIGAKSIIHKDLSLIDATFV 185
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
++ + + + A++ + L Y+ G+ P + + +K + ++
Sbjct: 186 QYNENATVKNWINTKKAMLTDGAWLLINGTIYKIGQPPKKFSELRIKTHLKPEFLTEYLA 245
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + FYE+ KK++ + +S + + + LI +P++LVAMTLIAA+VSL+ R
Sbjct: 246 EPVTIPFYELPKKIAVA-RSFGYSANKFDMHLQSLIALPMLLVAMTLIAATVSLKIPRFG 304
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q + ++ GI +GF+LY I +++SFG +G + P+ AA +PVI+ + I LL EDG
Sbjct: 305 QSKTLILGGIIAGFILYVISMLVRSFGNAGYIPPIIAAWVPVIVALFFGISFLLYTEDG 363
>gi|49474100|ref|YP_032142.1| hypothetical protein BQ04620 [Bartonella quintana str. Toulouse]
gi|49239604|emb|CAF25961.1| Hypothetical transmembrane protein [Bartonella quintana str.
Toulouse]
Length = 364
Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 122/364 (33%), Positives = 189/364 (51%), Gaps = 12/364 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF YLK T YF +L F+ID E +++ LP+Y+ +++ R+P I+Q
Sbjct: 6 LGRYFFVRYLKMTCYFFGSIFVLAFLIDFTENSSRLSYLPSYTAKDAFLISVLRIPFIMQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+IPFI L + + +LNR ELV++R+IG+S WQ L P G+ L G+F++L++NP+A
Sbjct: 66 QLIPFIALFSAMAMLISLNRKCELVVTRSIGVSAWQFLMPACFGAFLFGLFSILLVNPLA 125
Query: 125 TSGEKIGIDLIQQWKDNG---DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
G + +W+ N + IIPW+ IGAK I + D T
Sbjct: 126 AWGFSQAEKMTTEWRSNNVLTSFHNTRIIPWLTQRTNSDRTTIGAKSITDQGLSLIDATF 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + + + A + N L Y+ G P + +K + +
Sbjct: 186 VQYNDNATVKNWINTRKATLTNGVWLLTNGTIYKIGHPPEKFTEFQIKTNLKPEFLTERL 245
Query: 242 EQFASRSFYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
A+ FY++ KK+ SF +N F Y LI +P +L+AMTLIAA+VSL
Sbjct: 246 ANPATIPFYQLPKKIMIARSFGYSANNFDMYLQS-----LIALPALLIAMTLIAATVSLN 300
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F+R Q ++ G+ +GF LY I ++++FG +G + P+ AA PVI+ + L I LL
Sbjct: 301 FTRFGQSGTLIFGGVIAGFTLYVISVLVQAFGNAGYMPPIIAAWTPVIIALFLGISFLLH 360
Query: 358 KEDG 361
KEDG
Sbjct: 361 KEDG 364
>gi|62289648|ref|YP_221441.1| hypothetical protein BruAb1_0705 [Brucella abortus bv. 1 str.
9-941]
gi|82699576|ref|YP_414150.1| YjgP/YjgQ permease [Brucella melitensis biovar Abortus 2308]
gi|189023898|ref|YP_001934666.1| permease [Brucella abortus S19]
gi|254688958|ref|ZP_05152212.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 6
str. 870]
gi|254697092|ref|ZP_05158920.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 2
str. 86/8/59]
gi|254729988|ref|ZP_05188566.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 4
str. 292]
gi|256257206|ref|ZP_05462742.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 9
str. C68]
gi|260545600|ref|ZP_05821341.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
gi|260754447|ref|ZP_05866795.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
gi|260757666|ref|ZP_05870014.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
gi|260761493|ref|ZP_05873836.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260883476|ref|ZP_05895090.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
gi|297248056|ref|ZP_06931774.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
gi|62195780|gb|AAX74080.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
gi|82615677|emb|CAJ10664.1| Predicted permease YjgP/YjgQ family [Brucella melitensis biovar
Abortus 2308]
gi|189019470|gb|ACD72192.1| Predicted permease YjgP/YjgQ family [Brucella abortus S19]
gi|260097007|gb|EEW80882.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
gi|260667984|gb|EEX54924.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
gi|260671925|gb|EEX58746.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260674555|gb|EEX61376.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
gi|260873004|gb|EEX80073.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
gi|297175225|gb|EFH34572.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
Length = 362
Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 199/365 (54%), Gaps = 16/365 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF Y++ TLYFLLG L ++D E N++ LP Y++ L+A RVP I+Q
Sbjct: 6 LGRYFFTRYVQITLYFLLGIFALALLLDFTENANRLANLPAYTVWAALGLSAMRVPFIMQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ ++NP+A
Sbjct: 66 QMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPLA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G ++ WK S + PW++ + + IGAK IL + D T I
Sbjct: 126 AHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFIQ 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D++ I R DA A + + +L V+ + G+ P + T I ++ + E+
Sbjct: 186 FDEQKNIKDRYDARTATLQDGYWELTDVMRFARGQEP--QKLETFRISTQLRP-EYVEEK 242
Query: 244 FASRS---FYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
AS F ++ K+ SF +N F + Q+ L+ +P +L+AMTLIAA+VSL
Sbjct: 243 LASPETIPFTQLCHKIEVARSFGYSANAF-----DMQYQSLLALPALLMAMTLIAATVSL 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+F R Q ++ G+ +GF+LY + ++K+FG +G + P AA +PV++ + LL
Sbjct: 298 KFVRFGQSGAMILGGVIAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLL 357
Query: 357 QKEDG 361
KEDG
Sbjct: 358 HKEDG 362
>gi|17987546|ref|NP_540180.1| putative permeases [Brucella melitensis bv. 1 str. 16M]
gi|225852206|ref|YP_002732439.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
gi|254693440|ref|ZP_05155268.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
Tulya]
gi|256044379|ref|ZP_05447283.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|256113222|ref|ZP_05454090.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
Ether]
gi|256264286|ref|ZP_05466818.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
63/9]
gi|260563731|ref|ZP_05834217.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
16M]
gi|261213693|ref|ZP_05927974.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
Tulya]
gi|265990797|ref|ZP_06103354.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|265994633|ref|ZP_06107190.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
Ether]
gi|17983249|gb|AAL52444.1| putative permeases [Brucella melitensis bv. 1 str. 16M]
gi|225640571|gb|ACO00485.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
gi|260153747|gb|EEW88839.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
16M]
gi|260915300|gb|EEX82161.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
Tulya]
gi|262765746|gb|EEZ11535.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
Ether]
gi|263001581|gb|EEZ14156.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|263094546|gb|EEZ18355.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
63/9]
gi|326408705|gb|ADZ65770.1| permease YjgP/YjgQ family protein [Brucella melitensis M28]
gi|326538429|gb|ADZ86644.1| permease YjgP/YjgQ family protein [Brucella melitensis M5-90]
Length = 362
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 199/365 (54%), Gaps = 16/365 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF Y++ TLYFLLG L ++D E N++ LP Y++ L+A RVP I+Q
Sbjct: 6 LGRYFFTRYVQITLYFLLGIFALALLLDFTENANRLANLPAYTVWAALGLSAMRVPFIMQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ ++NP+A
Sbjct: 66 QMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPLA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G ++ WK S + PW++ + + IGAK IL + D T I
Sbjct: 126 AHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFIQ 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D++ I R DA A + + +L V+ + G+ P + T I ++ + E+
Sbjct: 186 FDEQKNIKDRYDARTATLQDGYWELTDVMRFARGQEP--QKLETFRISTQLRP-EYVEEK 242
Query: 244 FASRS---FYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
AS F ++ K+ SF +N F + Q+ L+ +P +L+AMTLIAA+VSL
Sbjct: 243 LASPETIPFTQLRHKIEVARSFGYSANAF-----DMQYQSLLALPALLMAMTLIAATVSL 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+F R Q ++ G+ +GF+LY + ++K+FG +G + P AA +PV++ + LL
Sbjct: 298 KFVRFGQSGAMILGGVIAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLL 357
Query: 357 QKEDG 361
KEDG
Sbjct: 358 HKEDG 362
>gi|319898730|ref|YP_004158823.1| hypothetical protein BARCL_0559 [Bartonella clarridgeiae 73]
gi|319402694|emb|CBI76240.1| conserved membrane protein of unknown function [Bartonella
clarridgeiae 73]
Length = 363
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/363 (33%), Positives = 192/363 (52%), Gaps = 11/363 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF YLK YFLLG IL +ID E +++ LP+Y++ +++ R+P I+Q
Sbjct: 6 LGRYFFVLYLKKICYFLLGVFILTLLIDFTENSSRLELLPHYTVKGAFLISLLRIPFIMQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+ PFI L + + +LN+ ELV++R+IGIS WQ L P G+ LLG+F++L +NP+A
Sbjct: 66 QLFPFIALFSAMTMLISLNQKLELVVARSIGISAWQFLMPACFGAFLLGLFSILFVNPLA 125
Query: 125 TSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+I W+ N + + IPW+ IGAK I + D +
Sbjct: 126 AWSSSQAEKMIAAWRSNNIEISTSNTRIPWLTQQTNLGRTTIGAKSITHQGLSLIDAIFV 185
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
++ + + + A + N L Y+ G+ P L +K + +
Sbjct: 186 QYNENATVKNWINTKKATLTNGAWLLTNGTIYKIGQTPEKFTELRLKTHLKPEFLTEHLA 245
Query: 243 QFASRSFYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ FY++ +K+ SF +N F + LI P++LVAMTLIAA+VSL+F
Sbjct: 246 DPVTIPFYKLPEKIAVARSFGYSANKF-----DMHLQSLIASPILLVAMTLIAATVSLKF 300
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R Q R ++ G+ +GF+LY I +++SFG +G + P+ AA +PV++ +S I LL
Sbjct: 301 TRFGQSRTLILGGVIAGFILYVISVLVRSFGNAGYIPPIIAAWVPVVVALSFGISFLLHT 360
Query: 359 EDG 361
EDG
Sbjct: 361 EDG 363
>gi|239831520|ref|ZP_04679849.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
3301]
gi|239823787|gb|EEQ95355.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
3301]
Length = 362
Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/362 (33%), Positives = 193/362 (53%), Gaps = 10/362 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF Y++ T YFLLG L ++D E +++ LP+YS+ L+A RVP I+Q
Sbjct: 6 LGRYFFIRYVQITFYFLLGIFALSLLLDFTENASKLSNLPDYSVWAALGLSAMRVPFIMQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+IPF+ L + +LNR ELV++R++G+S WQ L P G+ L G+ T+ ++NP A
Sbjct: 66 QMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGAFLFGLATIFILNPFA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G ++ WK S + PW++ + + IGAK IL + D T I
Sbjct: 126 AYGFAKADEIASTWKTGKTTDVSALRDPWLRQKTDEGETIIGAKSILDQGATLADATFIQ 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D+K I R DA A + + +L V + G P S + ++ + ++
Sbjct: 186 FDEKKNIRERFDARRAQLRDGHWELTDVTRFARGEEPQKMASFQIETQLRPEYVEEKLAT 245
Query: 244 FASRSFYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F ++ K+ SF +N F + Q+ L+ +P +L+AMTLIAA+VSL+F
Sbjct: 246 PDTIPFTQLRHKIEVARSFGYSANAF-----DMQYQSLLALPALLMAMTLIAATVSLKFV 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R Q ++ G+ +GFMLY + ++K+FG +G + P AA +PVI+ + LL KE
Sbjct: 301 RFGQSGAMILGGVIAGFMLYVVSVLVKAFGNAGFVPPFVAAWVPVIIATFFGVSFLLHKE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|148560142|ref|YP_001258668.1| hypothetical protein BOV_0678 [Brucella ovis ATCC 25840]
gi|148371399|gb|ABQ61378.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
Length = 362
Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 123/365 (33%), Positives = 199/365 (54%), Gaps = 16/365 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF Y++ TLYFLLG L ++D E +++ LP Y++ L+A RVP I+Q
Sbjct: 6 LGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIMQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ ++NP+A
Sbjct: 66 QMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPLA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G ++ WK S + PW++ + + IGAK IL + D T I
Sbjct: 126 AHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFIQ 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D++ I R DA A + + +L V+ + G+ P + T I ++ + E+
Sbjct: 186 FDEQKNIKDRYDARTATLQDGYWELTDVMRFARGQEP--QKLETFRISTQLRP-EYVEEK 242
Query: 244 FASRS---FYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
AS F ++ K+ SF +N F + Q+ L+ +P +L+A+TLIAA+VSL
Sbjct: 243 LASPETIPFTQLRHKIEVARSFGYSANAF-----DMQYQSLLALPALLMAITLIAATVSL 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+F R Q ++ G+ +GF+LY + ++K+FG +G + P AA +PV++ + LL
Sbjct: 298 KFVRFGQSGAMILGGVIAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLL 357
Query: 357 QKEDG 361
KEDG
Sbjct: 358 HKEDG 362
>gi|23501573|ref|NP_697700.1| hypothetical protein BR0686 [Brucella suis 1330]
gi|161618655|ref|YP_001592542.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
gi|163842956|ref|YP_001627360.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
gi|254701469|ref|ZP_05163297.1| hypothetical protein Bsuib55_11506 [Brucella suis bv. 5 str. 513]
gi|254704016|ref|ZP_05165844.1| hypothetical protein Bsuib36_08824 [Brucella suis bv. 3 str. 686]
gi|254707610|ref|ZP_05169438.1| hypothetical protein BpinM_11731 [Brucella pinnipedialis
M163/99/10]
gi|254709807|ref|ZP_05171618.1| hypothetical protein BpinB_05956 [Brucella pinnipedialis B2/94]
gi|256031298|ref|ZP_05444912.1| hypothetical protein BpinM2_11713 [Brucella pinnipedialis
M292/94/1]
gi|256060811|ref|ZP_05450971.1| hypothetical protein Bneo5_10662 [Brucella neotomae 5K33]
gi|256159412|ref|ZP_05457190.1| hypothetical protein BcetM4_10688 [Brucella ceti M490/95/1]
gi|256254706|ref|ZP_05460242.1| hypothetical protein BcetB_10505 [Brucella ceti B1/94]
gi|256369121|ref|YP_003106629.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
gi|260168437|ref|ZP_05755248.1| hypothetical protein BruF5_08723 [Brucella sp. F5/99]
gi|260566735|ref|ZP_05837205.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
gi|261221886|ref|ZP_05936167.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
gi|261315100|ref|ZP_05954297.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M163/99/10]
gi|261317345|ref|ZP_05956542.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
gi|261324803|ref|ZP_05964000.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
gi|261752012|ref|ZP_05995721.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
gi|261754671|ref|ZP_05998380.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
gi|261757899|ref|ZP_06001608.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
gi|265988383|ref|ZP_06100940.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M292/94/1]
gi|265997849|ref|ZP_06110406.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
gi|294852048|ref|ZP_06792721.1| hypothetical protein BAZG_00964 [Brucella sp. NVSL 07-0026]
gi|306845287|ref|ZP_07477863.1| hypothetical protein BIBO1_1972 [Brucella sp. BO1]
gi|23347486|gb|AAN29615.1| conserved hypothetical protein [Brucella suis 1330]
gi|161335466|gb|ABX61771.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
gi|163673679|gb|ABY37790.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
gi|255999281|gb|ACU47680.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
gi|260156253|gb|EEW91333.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
gi|260920470|gb|EEX87123.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
gi|261296568|gb|EEY00065.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
gi|261300783|gb|EEY04280.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
gi|261304126|gb|EEY07623.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M163/99/10]
gi|261737883|gb|EEY25879.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
gi|261741765|gb|EEY29691.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
gi|261744424|gb|EEY32350.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
gi|262552317|gb|EEZ08307.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
gi|264660580|gb|EEZ30841.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M292/94/1]
gi|294820637|gb|EFG37636.1| hypothetical protein BAZG_00964 [Brucella sp. NVSL 07-0026]
gi|306274446|gb|EFM56253.1| hypothetical protein BIBO1_1972 [Brucella sp. BO1]
Length = 362
Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/365 (33%), Positives = 199/365 (54%), Gaps = 16/365 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF Y++ TLYFLLG L ++D E +++ LP Y++ L+A RVP I+Q
Sbjct: 6 LGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIMQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ ++NP+A
Sbjct: 66 QMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPLA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G ++ WK S + PW++ + + IGAK IL + D T I
Sbjct: 126 AHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFIQ 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D++ I R DA A + + +L V+ + G+ P + T I ++ + E+
Sbjct: 186 FDEQKNIKDRYDARTATLQDGYWELTDVMRFARGQEP--QKLETFRISTQLRP-EYVEEK 242
Query: 244 FASRS---FYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
AS F ++ K+ SF +N F + Q+ L+ +P +L+AMTLIAA+VSL
Sbjct: 243 LASPETIPFTQLRHKIEVARSFGYSANAF-----DMQYQSLLALPALLMAMTLIAATVSL 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+F R Q ++ G+ +GF+LY + ++K+FG +G + P AA +PV++ + LL
Sbjct: 298 KFVRFGQSGAMILGGVIAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLL 357
Query: 357 QKEDG 361
KEDG
Sbjct: 358 HKEDG 362
>gi|225627183|ref|ZP_03785221.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|225618018|gb|EEH15062.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
Length = 397
Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 122/365 (33%), Positives = 200/365 (54%), Gaps = 16/365 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF Y++ TLYFLLG L ++D E +++ LP Y++ L+A RVP I+Q
Sbjct: 41 LGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIMQ 100
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ ++NP+A
Sbjct: 101 QMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPLA 160
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G ++ WK S + PW++ + + IGAK IL + D T I
Sbjct: 161 AHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFIQ 220
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D++ I R DA A + + +L V+ + G+ P + ++ ++ + + E+
Sbjct: 221 FDEQKNIKDRYDARTATLQDGYWELTDVMRFARGQEPQKLETFRISTQLRPEYVE---EK 277
Query: 244 FASRS---FYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
AS F ++ K+ SF +N F + Q+ L+ +P +L+AMTLIAA+VSL
Sbjct: 278 LASPETIPFTQLRHKIEVARSFGYSANAF-----DMQYQSLLALPALLMAMTLIAATVSL 332
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+F R Q ++ G+ +GF+LY + ++K+FG +G + P AA +PV++ + LL
Sbjct: 333 KFVRFGQSGAMILGGVIAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLL 392
Query: 357 QKEDG 361
KEDG
Sbjct: 393 HKEDG 397
>gi|254718822|ref|ZP_05180633.1| hypothetical protein Bru83_04670 [Brucella sp. 83/13]
gi|265983807|ref|ZP_06096542.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
gi|306838744|ref|ZP_07471578.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
gi|264662399|gb|EEZ32660.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
gi|306406146|gb|EFM62391.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
Length = 362
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/365 (33%), Positives = 198/365 (54%), Gaps = 16/365 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF Y++ TLYFLLG L ++D E +++ LP Y++ L+A RVP I+Q
Sbjct: 6 LGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIMQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ ++NP+A
Sbjct: 66 QMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPLA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G ++ WK S + PW++ + + IGAK IL + D T I
Sbjct: 126 AHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFIQ 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK+ I R DA A + + +L V+ + G+ P + T I ++ + E+
Sbjct: 186 FDKQKNIKDRYDARTATLQDGYWELTDVMRFARGQEP--QKLETFRISTQLRP-EYVEEK 242
Query: 244 FASRS---FYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
AS F ++ K+ SF +N F + Q+ L+ +P +L+AMTLIAA+VSL
Sbjct: 243 LASPETIPFTQLRHKIEVARSFGYSANAF-----DMQYQSLLALPALLMAMTLIAATVSL 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+F R Q ++ G+ +GF+LY + ++K+F +G + P AA +PV++ + LL
Sbjct: 298 KFVRFGQSGAMILGGVIAGFVLYVVSVLVKAFSDAGFVPPFVAAWVPVVIATFFGVSFLL 357
Query: 357 QKEDG 361
KEDG
Sbjct: 358 HKEDG 362
>gi|254713811|ref|ZP_05175622.1| hypothetical protein BcetM6_10740 [Brucella ceti M644/93/1]
gi|254717131|ref|ZP_05178942.1| hypothetical protein BcetM_12059 [Brucella ceti M13/05/1]
gi|261218946|ref|ZP_05933227.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
gi|261321555|ref|ZP_05960752.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
gi|260924035|gb|EEX90603.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
gi|261294245|gb|EEX97741.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
Length = 362
Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/365 (33%), Positives = 198/365 (54%), Gaps = 16/365 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF Y++ TLYFLLG L ++D E +++ LP Y++ L+A RVP I+Q
Sbjct: 6 LGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIMQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ ++NP+A
Sbjct: 66 QMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPLA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G ++ WK S + PW++ + + IGAK IL + D T I
Sbjct: 126 AHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFIQ 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D++ I R DA A + + +L V+ + G+ P + T I ++ + E+
Sbjct: 186 FDEQKNIKDRYDARTATLQDGYWELTDVMRFARGQEP--QKLETFRISTQLRP-EYVEEK 242
Query: 244 FASRS---FYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
AS F ++ K+ SF +N F + Q+ L+ +P +L+AMTLIAA+VSL
Sbjct: 243 LASPETIPFTQLRHKIEVARSFGYSANAF-----DMQYQSLLALPALLMAMTLIAATVSL 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+F R Q ++ G+ +GF+LY + ++K+FG +G + P AA +PV++ LL
Sbjct: 298 KFVRFGQSGAMILGGVIAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGASFLL 357
Query: 357 QKEDG 361
KEDG
Sbjct: 358 HKEDG 362
>gi|153009929|ref|YP_001371144.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
49188]
gi|151561817|gb|ABS15315.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
49188]
Length = 362
Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 122/362 (33%), Positives = 193/362 (53%), Gaps = 10/362 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF Y++ T YFLLG L ++D E +++ LP+YS+ L+A RVP I+Q
Sbjct: 6 LGRYFFIRYVQITFYFLLGIFALSLLLDFTENASKLSNLPDYSVWAALGLSAMRVPFIMQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+IPF+ L + +LNR ELV++R++G+S WQ L P G+ L G+ T+ ++NP A
Sbjct: 66 QMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGAFLFGLATIFILNPFA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G ++ WK S + PW++ + + IGAK IL + D T I
Sbjct: 126 AYGFAKADEIASTWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILDQGATLADATFIQ 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D+K I R DA A + + +L V + G P S + ++ + ++
Sbjct: 186 FDEKKNIKVRYDARTAQLKDGHWELTDVTRFARGEEPQKMASFQIETQLRPEYVEEKLAT 245
Query: 244 FASRSFYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F ++ K+ SF +N F + Q+ L+ +P +L+AMTLIAA+VSL+F
Sbjct: 246 PDTIPFTQLRHKIEVARSFGYSANAF-----DMQYQSLLALPALLMAMTLIAATVSLKFV 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R Q ++ G+ +GFMLY + ++K+FG +G + P AA +PV++ + LL KE
Sbjct: 301 RFGQSGAMILGGVIAGFMLYVVSVLVKAFGNAGFVPPFVAAWVPVVIATFFGVSFLLHKE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|49475338|ref|YP_033379.1| hypothetical protein BH05440 [Bartonella henselae str. Houston-1]
gi|49238144|emb|CAF27352.1| Hypothetical transmembrane protein [Bartonella henselae str.
Houston-1]
Length = 365
Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 121/365 (33%), Positives = 190/365 (52%), Gaps = 13/365 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +YFF YLK T YFL G +L +ID E ++ LP Y+ +++ R+P I+Q
Sbjct: 6 LGQYFFIRYLKMTCYFLGGIFVLALLIDFTENSGRLSSLPRYTAKDAFLISVLRIPFIMQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+IPFI L + + +LNR SELV++R+IGIS WQ L P G+ L G+F++L++NP+A
Sbjct: 66 QLIPFIALFSAMAMLISLNRKSELVVTRSIGISAWQFLMPACFGAFLFGLFSILLVNPLA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDI----IPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
G ++ +W+ + + + I W+ IGAK I + D T
Sbjct: 126 AWGFSQAERMMTEWRSKNNNVLTSLHNTRILWLTQRTHSGRTTIGAKSITDQGLSLIDAT 185
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + I + ++ A + N L Y+ G P + + +K + +
Sbjct: 186 FVQYNDNATIKNWINSRKATLINGAWLLTDGTIYKIGHPPEKFSELQIQTTLKPEFLTER 245
Query: 241 SEQFASRSFYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
A+ FY++ K+ SF +N F Y LI +P +L+AMTLIAA VSL
Sbjct: 246 LVNPATIPFYQLPTKIMIARSFGYSANNFDMYLQS-----LIALPALLIAMTLIAAVVSL 300
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
F+R Q +I++ G+ +GF LY I ++++FG +G + P+ AA PV + + L I LL
Sbjct: 301 NFTRFGQSKILILGGVIAGFSLYVISILVQAFGNAGYIPPIIAAWTPVFIALFLGISFLL 360
Query: 357 QKEDG 361
KEDG
Sbjct: 361 HKEDG 365
>gi|240850231|ref|YP_002971624.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
gi|240267354|gb|ACS50942.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
Length = 363
Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 194/366 (53%), Gaps = 17/366 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF YLK T YF +L +ID E ++ +P+++ L+ R+P I+Q
Sbjct: 6 LGRYFFIRYLKITCYFWGSIFVLALLIDFTENSGRLSSIPHHTAKDAFFLSVLRIPFIMQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q+IPFI L + +LN+ ELV++R+IG+S WQ L P +G+ LLG+F++L+INP+A
Sbjct: 66 QLIPFIALFSAMATLISLNKKLELVVTRSIGVSAWQFLMPACLGAFLLGLFSILLINPLA 125
Query: 125 TSGEKIGIDLIQQWKDNG--DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
G + +W++N + I W+ IGAK I + D T +
Sbjct: 126 AWGFSQAEKKMTEWRNNNVLTPLHNTDIHWLTQRTNLGRTTIGAKFITDQGLSLLDATFV 185
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + + + A + N L Y+ G P + T L I + + +E
Sbjct: 186 QYNDNATVKNWINTPKATLTNGSWLLTNGTIYKIGHPP--EKFTVLQIKTNLKP-EFLTE 242
Query: 243 QFASRS---FYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ A+ + FY++ KK+ SF +N F Y F LI +P +LVAMTLIAA+VS
Sbjct: 243 RLANPATIPFYQLPKKIMIARSFGYSANNFDMY-----FQSLIALPALLVAMTLIAATVS 297
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L F+R Q R ++ G+ +GFMLY I ++++FG +G + P+ AA PV++ + L I L
Sbjct: 298 LNFTRFGQSRTLILGGVIAGFMLYVISVLVQAFGNAGYIPPIIAAWTPVVIALFLGISFL 357
Query: 356 LQKEDG 361
L KEDG
Sbjct: 358 LHKEDG 363
>gi|163868027|ref|YP_001609231.1| hypothetical protein Btr_0826 [Bartonella tribocorum CIP 105476]
gi|161017678|emb|CAK01236.1| hypothetical transmembrane protein [Bartonella tribocorum CIP
105476]
Length = 363
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/361 (33%), Positives = 188/361 (52%), Gaps = 11/361 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYFF YLK T YF +L +ID E ++ LP+Y+ +L+ R+P I+QQ+
Sbjct: 8 RYFFIRYLKITCYFWGSIFVLALLIDFTENSGRLPSLPHYTAKDAFLLSVLRIPFIMQQL 67
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IPFI L + +LN+ ELV++R+IG+S WQ L P +G+ LLG+F++L+INP+A
Sbjct: 68 IPFIALFSAMTTLISLNKKLELVVTRSIGVSAWQFLMPACLGAFLLGLFSILLINPLAAW 127
Query: 127 GEKIGIDLIQQWKDNG--DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G ++ +W++N + I W+ IGAK I + D T +
Sbjct: 128 GFSQAEKMMTEWRNNNVLTSLHNTRIHWLTQRTDLGRTTIGAKFITDQGFSLLDATFVQY 187
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ + + A + + L Y+ G P + +K + +
Sbjct: 188 KDDATVKNWINTPKATLTHGAWFLTNGTIYKIGHPPEKFTVLKIKTNLKPEFLTERLVNP 247
Query: 245 ASRSFYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
A+ FY++ KK+ SF ++ F Y LI +P +LVAMTLIAA+VSL F+R
Sbjct: 248 ATIPFYQLPKKIMIARSFGYSAHNFDMYLQS-----LIALPALLVAMTLIAATVSLNFTR 302
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
Q R ++ G+ +GFMLY I ++++FG +G + P+ AA PV++ + L I LL KED
Sbjct: 303 FGQSRTLILGGVIAGFMLYVISVLVQAFGNAGYIPPIIAAWTPVVIALFLGISFLLHKED 362
Query: 361 G 361
G
Sbjct: 363 G 363
>gi|260466947|ref|ZP_05813129.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
WSM2075]
gi|259029244|gb|EEW30538.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
WSM2075]
Length = 360
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 118/366 (32%), Positives = 196/366 (53%), Gaps = 19/366 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF Y+ T++F LG + LVF+ID E+ + LP ++ ++ R+P+I+
Sbjct: 5 LGRYFFFRYVAITIWFFLGLLALVFLIDFTELSGRTTGLPGFTYGTAMAISGLRMPMIML 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +PF+ L + +LNR ELVI+R+ G+S WQ L P +G++L G+ +V +INP+A
Sbjct: 65 QTVPFVGLFSAMATLVSLNRRYELVIARSAGVSAWQFLLPCCIGALLFGVVSVGIINPLA 124
Query: 125 TSGEKIGIDLIQQWKDN-GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + Q + + +D PW++ D IGA+ IL + D
Sbjct: 125 AHAFSLSEQIETQLRSGKSNTVSADAAPWIRQKTSSGDTIIGARAILNQGLEMSDAVFFI 184
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+D++ I RKDA A + + +L+ V ++ G I N +P + +F ++
Sbjct: 185 LDQQGNIAERKDAVRAYLRDGYWELQDVKTFRNGVIQSAAND---RVPTNLK--PEFVQE 239
Query: 244 FASR----SFYEIIKKM----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+R FY++ K+ SF K+N F QF L+ +P +LVAMTLIAA+VS
Sbjct: 240 RLARPETIPFYDLPGKIEVARSFGLKANAF-----AMQFDSLVALPFLLVAMTLIAATVS 294
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ F+R Q ++ G+ +GF+LY + ++K+FG +G + AA +PV++ + + L
Sbjct: 295 MRFARMGQSATMILGGVVAGFLLYVVSVLVKAFGVAGFVPTAVAAWVPVVVAMFFGVTFL 354
Query: 356 LQKEDG 361
L KEDG
Sbjct: 355 LYKEDG 360
>gi|163759135|ref|ZP_02166221.1| putative permease [Hoeflea phototrophica DFL-43]
gi|162283539|gb|EDQ33824.1| putative permease [Hoeflea phototrophica DFL-43]
Length = 345
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/347 (31%), Positives = 186/347 (53%), Gaps = 4/347 (1%)
Query: 16 TTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVN 75
T L + L ++++ ++D NE ++ P Y+++ G +++A RVP I+Q IPF+ L+ +
Sbjct: 2 TFLTYCLAILVIILLVDFNESGRRLSAAPEYTVTTGLLVSALRVPTILQAAIPFVVLIAS 61
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
I LNR ELV++RA GIS WQ L P V ++L+G V +N A S + +I
Sbjct: 62 IATLLQLNRKYELVVARAAGISAWQFLAPLVAANLLIGFIAVAGLNTFAASAMQWAETII 121
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKD 195
+ ++ G Q SD PW++ Q D +GA+ T D+ I R +
Sbjct: 122 VE-RNLGSAQSSDSAPWLRQRTEQGDTVLGARASAAGGTRLSGATFFLFDEDQNIKERLE 180
Query: 196 ADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFSEQFASRSFYEIIK 254
A+ A++ + + L V + G P+++ S ++ +K + + + F+E+
Sbjct: 181 AETAVLGDGEWVLTNVRRIR-GSEPVEQVESASVPTSLKAEFVGESLTSPDTVPFFELRD 239
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
K++ + KS E QF+ L+ P +L AMTLIAA VSL+F R Q ++ GI +
Sbjct: 240 KIAVA-KSFGLSATSYEMQFHRLVAQPALLAAMTLIAAIVSLKFVRFGQSLTVILGGILA 298
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
GF+LY + ++++F +G + P+ AA +PV++ +L +LL KEDG
Sbjct: 299 GFVLYVVSELIQAFANAGTIPPIVAAWLPVLVASALGTTVLLHKEDG 345
>gi|110634109|ref|YP_674317.1| permease YjgP/YjgQ [Mesorhizobium sp. BNC1]
gi|110285093|gb|ABG63152.1| permease YjgP/YjgQ [Chelativorans sp. BNC1]
Length = 359
Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/368 (32%), Positives = 184/368 (50%), Gaps = 25/368 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYFF+ Y T + +G LV+++ EI + G+L ++ S LAA ++P+I+Q
Sbjct: 6 LGRYFFRRYAVITAWNFIGVAALVYIVTFTEITGRAGDLEGFTTSWALGLAALQLPIIMQ 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +PFI LV I +LNR ELVI+RA GIS WQ L P G+ + G+ TVLV+NPIA
Sbjct: 66 QAVPFIGLVAAIATLISLNRKYELVIARAAGISAWQFLTPIAFGAFVFGLLTVLVLNPIA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT- 183
+++ D + W++ Q + IGA L T +
Sbjct: 126 ARAFA-SAQMLEATVRGADTSNNAKERWIKQRTDQGETIIGADAALAGG------TELVR 178
Query: 184 ----IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG--- 236
I ++I R DA A + + +L VV Q G P + T +P +
Sbjct: 179 PVFFIIGDDRIAERLDAASAFLRDGYWELVDVVRRQGGNAP--EKIATARVPTNLKPEFV 236
Query: 237 FQKFSEQFASRSFY---EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
Q+ ++ A F I SF ++N F Q + LI +P +LVAMTLIAA+
Sbjct: 237 GQELTDPDAVSIFALPGMIETAHSFGLRANAF-----AMQLHSLITLPPLLVAMTLIAAT 291
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
VS+ F+R Q ++ G+ +GF+LY ++++FG +G + P AA PV++ + +
Sbjct: 292 VSMRFTRMGQSATVILGGVVAGFLLYVSSVLVRAFGDAGFVPPPIAAWTPVMVAMFFGVT 351
Query: 354 ILLQKEDG 361
LL +EDG
Sbjct: 352 FLLFREDG 359
>gi|90419501|ref|ZP_01227411.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90336438|gb|EAS50179.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 360
Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/355 (30%), Positives = 181/355 (50%), Gaps = 2/355 (0%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYFF+ Y+ + L LL L+++IDL E+ + + A+ + RVP I Q
Sbjct: 8 RYFFRLYVVSFLSTLLTVFALIYLIDLIEVSRR-SRFEDLGFGATALFSLLRVPSFIGQA 66
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
PFI L +I LNR ELV++RA G+SIWQ+L PFVVGS L+GI V NP+
Sbjct: 67 FPFIVLFSSIYTLLTLNRRLELVVARASGVSIWQILLPFVVGSFLIGIVATFVYNPLTAY 126
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ + D+ GD SD +PW++ +GAK + + D T+ ++
Sbjct: 127 TKTLSEDMQTTMTAGGDVSSSDRVPWLRQEGDGIQSILGAKTVARSGTVLGDITAFVMND 186
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
+ + R DA A++ ++ L+K + G P L ++ + ++ +
Sbjct: 187 EGIVKERIDAARAVLNDEYWLLEKPRVTRVGYRPEFPQEYKLPTSLRPEYVEQRIADPEA 246
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
S +++ K+ + S F+ Q++ L+ P + +AMTL+AA+V+ FSR+ Q
Sbjct: 247 ISIWQLGSKIDVA-ASLGFNTDAFRMQYHTLVAQPALFIAMTLLAATVATRFSRTGQSGR 305
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+A G+ +GF+LY + + K+ G + ++ PV AA PV+ + ILL +EDG
Sbjct: 306 TIAGGVMAGFVLYVVTFLAKALGSNDVVPPVMAAWFPVLAAGLSGVTILLHQEDG 360
>gi|118590093|ref|ZP_01547496.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
gi|118437065|gb|EAV43703.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
Length = 364
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 185/358 (51%), Gaps = 7/358 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
YF +LK L L A +L+++ D+ E+ + G+ +S+ R A+++A RVPL+++Q+I
Sbjct: 10 YFSGRFLKAILGLFLFAAVLIYLFDVLELVRRGGDREGFSVLRVAMISALRVPLLLEQVI 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT-- 125
PF L I F L+R ELV++RA GIS+WQ P ++ I+LGI ++ V NP A
Sbjct: 70 PFTVLFGAIAAFVTLSRALELVVARASGISVWQFSLPAILVGIILGILSITVYNPAAVWF 129
Query: 126 --SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+++ L + + +D+ W++ + + AK++L + T T
Sbjct: 130 QQKSDEVAAGLFGSEQSFLLQSSNDV--WVRQDGLDGESVLLAKQLLEGGTLLRGVTIFT 187
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
DK R +AD A + + L+ + Y + P ++ + ++
Sbjct: 188 FDKDGTFRERIEADEARLGDQIWYLENAIVYTTEQDPQPYGQYQISTFLTATEVRESIGS 247
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S SF+ + + + + + + YR Q+ L+ PL+LVAM LIAA+VSL+ SR
Sbjct: 248 PESISFWNLPRFIELARNAGL-PAYRYNLQYQTLLARPLLLVAMILIAAAVSLKVSRFGG 306
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++ GI SGF+LY + + K FG +GI+ P+ AA P I + + + ILL +EDG
Sbjct: 307 LGSMILGGILSGFVLYVLTELAKDFGGAGIVPPLVAAWAPGIFGVLMGLTILLNQEDG 364
>gi|218659050|ref|ZP_03514980.1| putative permease protein [Rhizobium etli IE4771]
Length = 272
Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/243 (37%), Positives = 140/243 (57%), Gaps = 2/243 (0%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
R+PL +QQ IPF+ L V + V LNR ELV++RA GIS+WQ + PFV GS+ LG+ T
Sbjct: 2 RLPLNLQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFVAGSLALGVLTT 61
Query: 118 LVINPIATSGEKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
+NP+A G++ + + W+ +N +K+ IPW++ + + D+ IGA+ +
Sbjct: 62 TALNPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKL 121
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
D I D ++I R+DA A + + +L VVE + G IP+ K S L +K D
Sbjct: 122 VDAVLIHFDSSGRVIMRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDF 181
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
Q+ + F+++ +++ + KS ETQF L+ PL+LVAMTLIAA+VSL
Sbjct: 182 VQERLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSL 240
Query: 297 EFS 299
+FS
Sbjct: 241 KFS 243
>gi|114704780|ref|ZP_01437688.1| hypothetical protein FP2506_07586 [Fulvimarina pelagi HTCC2506]
gi|114539565|gb|EAU42685.1| hypothetical protein FP2506_07586 [Fulvimarina pelagi HTCC2506]
Length = 360
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 178/357 (49%), Gaps = 6/357 (1%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYFF+ YL ++ LV +IDL E+ + L + S+ + +A RVP ++Q
Sbjct: 8 RYFFRLYLVNFFSTVVAVSALVLLIDLVEL-GRRSVLADQSLGVLLLFSALRVPAFMEQA 66
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA-- 124
PFI L +I +LNR ELV++RA G+S WQ+L PF+ GS+ LG+ NP++
Sbjct: 67 FPFIILFSSIFTLISLNRRLELVVARAAGVSAWQILMPFIAGSLFLGLLATFAYNPLSAY 126
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
T + I+ + ++ PW++ + +GA ++ + + ++ +
Sbjct: 127 TKAQAANIESAAEGREVASSALQT--PWLRQNADGVRSIMGATQVAENGRVLSNVSAFVM 184
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ R DA A + N + L + + G P D L ++ + ++
Sbjct: 185 ADDGSVETRIDAPRAELGNQEWILLRPRVTRIGYTPRDLVEYRLPTSLRPEYIEQRLADP 244
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S +E+ K+ + S F++ Q++ LI P + VAMTL+AA+V+ FSR+ QP
Sbjct: 245 ETISIWELGSKIDVA-ASLGFNSMAFSMQYHTLIAQPALFVAMTLLAATVATRFSRTGQP 303
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
I G+ +GF+LY + + K+ G + ++ P+ AA PV+ + ILL +EDG
Sbjct: 304 GRIFVGGVLAGFVLYVVTFLAKALGSNDVVPPIVAAWFPVLAAGLFGVTILLHQEDG 360
>gi|307946742|ref|ZP_07662077.1| permease [Roseibium sp. TrichSKD4]
gi|307770406|gb|EFO29632.1| permease [Roseibium sp. TrichSKD4]
Length = 364
Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 184/365 (50%), Gaps = 21/365 (5%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
YF + K+ L L A +L+F+ D+ E+ + G+ +++ R A+++ RVPL+++Q+I
Sbjct: 10 YFSARFFKSILGLFLLAAVLIFLFDVLELVRRGGDQEGFTVVRVALISILRVPLLLEQVI 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT-- 125
PF L +I+ F L+R ELV++RA GIS+WQ P VV +++G +V+ NP+A
Sbjct: 70 PFAVLFGSILAFVTLSRALELVVARASGISVWQFAAPAVVVGLIIGTLSVVAYNPLAVWL 129
Query: 126 --SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ L + + D+ W++ + + AK++L D T
Sbjct: 130 QHRSDEAAAGLFGSEQSFLLQTTQDV--WVRQDGLDGESVLLAKQLLDGGTRLLDVTIFA 187
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEY-------QYGRIPIDKNSTTLNIPIKMDG 236
DK+ R +A A + + L+ V Y QYGR + T + +
Sbjct: 188 FDKEGSFKERVEAATARLGDQIWFLEDVTVYTTERDPQQYGRYEVSTYLTATEVRESIGS 247
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S SF+ + + + + + + YR Q+ L+ PL+L AM +IAA+VSL
Sbjct: 248 PE-------SISFWSLPRFIELARNAGL-PAYRYTLQYQTLLARPLLLTAMIIIAAAVSL 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
SR ++ GI +GF+LY + + K FG +GI+ P+ AA P I + + + ILL
Sbjct: 300 RVSRFGGLGSMILGGIVAGFVLYVLSELAKDFGGAGIVPPIVAAWAPGIFGVLMGLTILL 359
Query: 357 QKEDG 361
++EDG
Sbjct: 360 KQEDG 364
>gi|254503227|ref|ZP_05115378.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
gi|222439298|gb|EEE45977.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
Length = 364
Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/358 (29%), Positives = 177/358 (49%), Gaps = 7/358 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
YF ++K L L A +L+F+ D+ E+ + + +++ R A ++ RVPL+++Q+I
Sbjct: 10 YFSGRFIKAILGLFLFAAVLLFLFDVLELVRRGSDREGFTVMRVAYISLLRVPLLLEQVI 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT-- 125
PF L I F L+R ELV++RA GIS+WQ P V+ + LGIF++ V NP A
Sbjct: 70 PFTVLFGAIAAFVTLSRALELVVTRAAGISVWQFSTPAVLVGLFLGIFSITVYNPAAVYL 129
Query: 126 --SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E+ L D +S W++ + + A ++L T T
Sbjct: 130 QQKSEEAAAGLFG--ADQTFLLQSSGEVWVRQDGLDGESVLRASQLLDNGTRLLRVTVFT 187
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D+ R +A+ A + N+ L + Y P + ++ + ++
Sbjct: 188 FDEDGTFRERIEAEQARLGNETWYLDNAIVYTTENDPQSYSVYQISTFLTATEVRESIGS 247
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S SF+ + + + + + + YR Q+ L+ PL+L+AM LIAA+VSL+ SR
Sbjct: 248 PESISFWNLPRFIDLARNAGL-PAYRYNLQYQSLLARPLLLIAMILIAAAVSLKVSRFGG 306
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++ GI SGF+LY + + K FG +GI+ P+ AA P I + + + ILL +EDG
Sbjct: 307 LGRMILGGILSGFVLYVLTELAKDFGGAGIVPPLVAAWAPGIFGVLMGLTILLHQEDG 364
>gi|254473284|ref|ZP_05086681.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
gi|211957400|gb|EEA92603.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
Length = 363
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/358 (27%), Positives = 183/358 (51%), Gaps = 7/358 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y K +LK+ L L A +L+ + D+ E+ + G+ +S+ R A ++A RVPL+++Q+I
Sbjct: 9 YISKRFLKSILALFLFAAVLILLFDVLELVRRGGDREGFSLLRIAAISALRVPLLLEQVI 68
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT-- 125
PF L +I F L+R+ ELV++RA GIS+WQ P ++ + +GI +V+ NP A
Sbjct: 69 PFAVLFGSIWAFVTLSRSLELVVARAAGISVWQFTAPALLTGLFIGIASVIGYNPGAVYL 128
Query: 126 --SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+++ L + + ++ W++ + + + A+ I + T +
Sbjct: 129 QQKSDEVAEGLFSVEQTYLLEGSGEV--WLRQNGTDGESVLHARHIGGQGATLNGVTIFS 186
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D++ + R +A A++ +L V Y P ++ +++ + ++
Sbjct: 187 FDRQGEFSERIEARRAVLAEGMWRLTDAVVYALDTDPQHYDNYSVSTFLTPTEVKESIGS 246
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S SF+ + + + S ++ + YR Q+ L+ PL+LVAM +IAA+VSL SR
Sbjct: 247 PESISFWSLPRFIELSQRAGL-PAYRYSLQYQTLLAKPLLLVAMIVIAAAVSLRVSRFGG 305
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++ +GI +GF+LY + I K G +GI+ AA P + + + ILL +EDG
Sbjct: 306 IGRLIIWGIIAGFVLYAVSEISKDLGGAGIVPTAVAAWAPGVFGVLMGFTILLNQEDG 363
>gi|218508596|ref|ZP_03506474.1| putative permease protein [Rhizobium etli Brasil 5]
Length = 239
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 135/236 (57%), Gaps = 2/236 (0%)
Query: 127 GEKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
G++ + + W+ +N +K+ IPW++ + + D+ IGA+ + D I D
Sbjct: 5 GQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDAVLIHFD 64
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 65 SSGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQERLTAPE 124
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ F+++ +++ + KS ETQF L+ PL+LVAMTLIAA+VSL+FSR NQ R
Sbjct: 125 TIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSLKFSRFNQSR 183
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +EDG
Sbjct: 184 SVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQEDG 239
>gi|39936125|ref|NP_948401.1| permease YjgP/YjgQ [Rhodopseudomonas palustris CGA009]
gi|39649979|emb|CAE28503.1| predicted permease [Rhodopseudomonas palustris CGA009]
Length = 361
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 181/364 (49%), Gaps = 15/364 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--RVPLI 62
L RYF + ++ +L G +L+ +D ++ + G L ++S V A+ RVP +
Sbjct: 6 LGRYFARRFVIASLGVFFGLFVLLVFVDYVDLLRRAGGL---AVSAFYVAQASFCRVPQL 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++++PF L+ + + L+R+ ELV++RA G+S W+ ++P + +I +GIF V NP
Sbjct: 63 LERLLPFCILIGGMTCYLALSRSLELVVARAAGLSAWEFISPALWSAIAIGIFATTVFNP 122
Query: 123 IATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ ++ + + ++ G Q ++ WM +P I A + + + T
Sbjct: 123 LSAHMQERAKQMEAEMFGENTGGLQDANGF-WMNQVSPDGQAIINAARSQQQGAVLTGIT 181
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + R +A A++ LK V Y P+D++ TL +P + +
Sbjct: 182 VFRFEPDFQFKDRIEAREAVLEPGHWLLKNVRRYTMDGAPVDQD--TLELPTSLT-LAQV 238
Query: 241 SEQFA---SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
FA S SF+++ + S S F Q++ L+ P +L AM ++AASVSL
Sbjct: 239 RNSFATPESVSFWQLPTYIKSSENSG-FATAGYRLQYHKLLAKPFLLAAMVMLAASVSLR 297
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F R + +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL
Sbjct: 298 FFRFGGVQKMVLSGVAAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFLALLY 357
Query: 358 KEDG 361
+EDG
Sbjct: 358 QEDG 361
>gi|192291843|ref|YP_001992448.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
TIE-1]
gi|192285592|gb|ACF01973.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
TIE-1]
Length = 362
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 181/364 (49%), Gaps = 15/364 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--RVPLI 62
L RYF + ++ +L G +L+ +D ++ + G L ++S V A+ RVP +
Sbjct: 7 LGRYFARRFVIASLGVFFGLFVLLVFVDYVDLLRRAGGL---AVSAFYVAQASFCRVPQL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++++PF L+ + + L+R+ ELV++RA G+S W+ ++P + +I +GIF V NP
Sbjct: 64 LERLLPFCILIGGMTCYLALSRSLELVVARAAGLSAWEFISPALWSAIAIGIFATTVFNP 123
Query: 123 IATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ ++ + + ++ G Q ++ WM +P I A + + + T
Sbjct: 124 LSAHMQERAKQMEAEMFGENTGGLQDANGF-WMNQVSPDGQAIINAARSQQQGAVLTGIT 182
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + R +A A++ LK V Y P+D++ TL +P + +
Sbjct: 183 VFRFEPDFQFKDRIEAREAVLEPGHWLLKNVRRYTMDGAPVDQD--TLELPTSLT-LAQV 239
Query: 241 SEQFA---SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
FA S SF+++ + S S F Q++ L+ P +L AM ++AASVSL
Sbjct: 240 RNSFATPESVSFWQLPTYIKSSENSG-FATAGYRLQYHKLLAKPFLLAAMVMLAASVSLR 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F R + +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL
Sbjct: 299 FFRFGGVQKMVLSGVAAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFLALLY 358
Query: 358 KEDG 361
+EDG
Sbjct: 359 QEDG 362
>gi|316933707|ref|YP_004108689.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
gi|315601421|gb|ADU43956.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
Length = 361
Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 97/364 (26%), Positives = 179/364 (49%), Gaps = 15/364 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--RVPLI 62
L RYF + ++ +L G +L+ +D ++ + G L ++S V A+ RVP +
Sbjct: 6 LGRYFARRFVVASLGVFFGLFVLLVFVDYVDLLRRAGGL---AVSAFYVAQASFCRVPQL 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++++PF L+ + + L+R+ ELV++RA G+S W+ ++P + +I +GI + NP
Sbjct: 63 LERLLPFCILIGGMTCYLALSRSLELVVARAAGLSAWEFISPALWSAIAIGIVATTIFNP 122
Query: 123 IATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ ++ + + ++ G Q ++ WM NP I A + + + T
Sbjct: 123 LSAHMQERAKQMEAEMFGENTGGLQDANGF-WMNQVNPDGQAIINAARSQQQGAVLTGIT 181
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
D + R +A A++ LK V Y P D++ T+ +P + +
Sbjct: 182 IFRFDPNFQFRDRIEAREAVLEPGHWLLKSVRRYTLDSAPTDQD--TMELPTSLT-LAQV 238
Query: 241 SEQFA---SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
FA S SF+++ + S S F Q++ L+ P +L AM ++AASVSL
Sbjct: 239 RNSFATPESVSFWQLPAYIKSSENSG-FATAGYRLQYHKLLAKPFLLAAMVMLAASVSLR 297
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F R + +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL
Sbjct: 298 FFRFGGVQKMVLSGVAAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFLALLY 357
Query: 358 KEDG 361
+EDG
Sbjct: 358 QEDG 361
>gi|306842049|ref|ZP_07474722.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
gi|306287890|gb|EFM59310.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
Length = 286
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 154/289 (53%), Gaps = 16/289 (5%)
Query: 81 NLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKD 140
+LNR ELV++R++G+S WQ L P G++L G+ T+ ++NP+A G ++ WK
Sbjct: 6 SLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPLAAHGFSKAEEIAAMWKT 65
Query: 141 NGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLA 199
S + PW++ + + IGAK IL + D T I D++ I R DA A
Sbjct: 66 GKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFIQFDEQKNIKDRYDARTA 125
Query: 200 IIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS---FYEIIKKM 256
+ + +L V+ + G+ P + T I ++ + E+ AS F ++ K+
Sbjct: 126 TLQDGYWELTDVMRFARGQEP--QKLETFRISTQLRP-EYVEEKLASPETIPFTQLRHKI 182
Query: 257 ----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
SF +N F + Q+ L+ +P +L+AMTLIAA+VSL+F R Q ++ G+
Sbjct: 183 EVARSFGYSANAF-----DMQYQSLLALPALLMAMTLIAATVSLKFVRFGQSGAMILGGV 237
Query: 313 FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+GF+LY + ++K+FG +G + P AA +PV++ + LL KEDG
Sbjct: 238 IAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLLHKEDG 286
>gi|146340303|ref|YP_001205351.1| putative permease [Bradyrhizobium sp. ORS278]
gi|146193109|emb|CAL77120.1| putative permease [Bradyrhizobium sp. ORS278]
Length = 365
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 177/364 (48%), Gaps = 13/364 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYF +L + + +L+ ++D E+ + L + S A + RVP +++
Sbjct: 8 LGRYFAGRFLVSAVGVFASIFLLLVLVDYIEMVRRTSGLASASALMVAETSLFRVPQLLE 67
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++PF L+ + + L+R ELV++RA G+S WQ + P + +I+LG+ + NP++
Sbjct: 68 KMMPFCVLIGAMTCYLALSRRLELVVARAAGVSAWQFIAPALASAIVLGLMATTLYNPMS 127
Query: 125 TS----GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +++ +L G + S W+ NP + I A + + T
Sbjct: 128 ANLRELSKRMEAELFGSAPGGGVQDASGF--WLNQLNPDGSVIINAARSEQQGVRLTGLT 185
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ-- 238
D KN+ R +A A + + + K V + P+D+ T +P + Q
Sbjct: 186 LFRFDTKNRFKDRIEAREASLEDGQWVFKSVRRFSLDAPPVDE--PTFILPTTLTPAQVR 243
Query: 239 -KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
FS + SF+++ + S++S+ F Q++ LI P +L AM ++AASVSL
Sbjct: 244 NSFSTP-ETVSFWQLPSYIR-SSESSGFATAGYRLQYHKLIAQPFLLAAMVMLAASVSLR 301
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F R + +V G+ +GF+LY + + + K+ ++ P+AAA +PV + + LL
Sbjct: 302 FFRMGGVQKMVLSGVGAGFLLYVLSKVTEDLSKAALMDPIAAAWLPVFVGGLTGFMALLY 361
Query: 358 KEDG 361
+EDG
Sbjct: 362 QEDG 365
>gi|209885475|ref|YP_002289332.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
gi|209873671|gb|ACI93467.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
Length = 364
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 183/363 (50%), Gaps = 14/363 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYF + ++ + LG +L+ ++D E+ + +P S A + RVP +++
Sbjct: 10 LARYFARRFIVASCAVFLGIFLLLVLVDYIEMVRRTSSIPTASAFMVAQTSLFRVPQLLE 69
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++PF L+ + + L+R+ ELV++RA GIS WQ + P +V ++++GI + NPI+
Sbjct: 70 RLMPFCILIGAMSCYLALSRSLELVVARAAGISAWQFITPALVSALVMGILATVAYNPIS 129
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDII-PWM-QISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ ++ ++ Q NG Q D+ W+ Q+++ Q I A L +N + +
Sbjct: 130 AAMQERSKEMEAQLFSNGGVQ--DVAQSWINQVTSEGQSIISAA---LSQNQ-GTRLSGV 183
Query: 183 TIDKKN---KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T+ + N R DA A + + +L Y PI +S L+ + +
Sbjct: 184 TVFRFNPDGSFRDRIDARDANLEPGQWRLGGARIYSMTAAPIPHDSFLLSTNLTPSQVRN 243
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIF-HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ SF+++ + + S S + YR Q+ L+ P +L +M L+AA+VSL F
Sbjct: 244 SFATPETVSFWQLPEYIRSSQSSGLATAGYR--LQYQKLLARPFLLASMVLVAAAVSLRF 301
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + +V G+ +GF+LY + + + K+ ++ P+AAA +PV + + L LL +
Sbjct: 302 FRFGGVQKMVLSGVAAGFLLYVLSKVTEDLSKAELMHPLAAAWLPVCVGGLIGFLALLHQ 361
Query: 359 EDG 361
EDG
Sbjct: 362 EDG 364
>gi|86749599|ref|YP_486095.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
gi|86572627|gb|ABD07184.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
Length = 361
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/366 (27%), Positives = 178/366 (48%), Gaps = 19/366 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--RVPLI 62
L RYF ++ + L G +L+ +D ++ + G L S+S + A+ RVP +
Sbjct: 6 LGRYFAARFVSSALGVFFGLFVLLVFVDYIDLLRRAGGL---SVSAFVIAQASFFRVPQL 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++++PF L+ + + L+R ELVI+RA G+S WQ + P + ++ LG+F V NP
Sbjct: 63 LERLLPFCILIGGMTCYLALSRRLELVIARAAGLSAWQFIAPALWSALALGVFASAVFNP 122
Query: 123 IAT----SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
++ +++ +L Q +G Q ++ WM +P+ I A + + +
Sbjct: 123 MSAYMQERAKQMEAELFGQ--GSGSLQDANGF-WMNQVSPEGQSIINAARSQQQGAVLSG 179
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + + R +A A++ LK V +Y P + TL +P +
Sbjct: 180 ISVFRFEPDFQFKDRIEAREAVLEPGYWLLKDVRKYTLDSAP--EEQATLRLPTALT-LA 236
Query: 239 KFSEQFA---SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ FA S SF+++ + S S F Q++ L+ P +L AM ++AASVS
Sbjct: 237 QVRNSFATPESVSFWQLPSYIKASESSG-FATAGYRLQYHKLLAKPFLLAAMVMLAASVS 295
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L F R + +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L L
Sbjct: 296 LRFFRFGGVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFLAL 355
Query: 356 LQKEDG 361
L +EDG
Sbjct: 356 LYQEDG 361
>gi|91977435|ref|YP_570094.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
gi|91683891|gb|ABE40193.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
Length = 361
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/363 (25%), Positives = 175/363 (48%), Gaps = 13/363 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--RVPLI 62
L RYF ++ + L G +L+ +D ++ + G L ++S + A+ RVP +
Sbjct: 6 LGRYFAARFVTSALGVFFGLFVLLVFVDYIDLLRRAGGL---AVSALVIAQASFYRVPQL 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++++PF L+ + + L+R+ ELVI+RA G+S W+ ++P + ++ LG+F V NP
Sbjct: 63 LERLMPFCILIGGMTCYLALSRSLELVIARAAGLSAWEFVSPALWSALALGVFASAVFNP 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIP-WMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ ++ + + G D WM +P+ I A + + + +
Sbjct: 123 MSAYMQERAKQMEAELFGQGSGSLQDASGFWMNQVSPEGQSIINAARSQQQGAVLSGISV 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + R +A A++ L+ V Y P+ ++ T +P + +
Sbjct: 183 FRFEPDFQFKDRIEAREAVLEPGHWLLRDVRRYTLDSAPVQED--TFRLPTALT-LAQVR 239
Query: 242 EQFA---SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
FA S SF+++ + S S F Q++ L+ P +L AM ++AASVSL F
Sbjct: 240 NSFATPESVSFWQLPSYIRASESSG-FATSGYRLQYHKLLAKPFLLAAMVMLAASVSLRF 298
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL +
Sbjct: 299 FRFGGVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFLALLYQ 358
Query: 359 EDG 361
EDG
Sbjct: 359 EDG 361
>gi|299133713|ref|ZP_07026907.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
gi|298591549|gb|EFI51750.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
Length = 360
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 183/362 (50%), Gaps = 12/362 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYF + ++ +L LG +L+ ++D E+ + +P S A + RVP +++
Sbjct: 6 LARYFARRFIIASLAVFLGIFLLLVLVDYIEMVRRTSSIPTASAIMVAETSLFRVPQLLE 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++PF L+ + + L+R+ ELV++RA GIS WQ + P +V ++L+G+ +V NPI+
Sbjct: 66 KLMPFCILIGAMSCYLALSRSLELVVARAAGISAWQFITPALVAALLMGVLATVVYNPIS 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWM-QISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ ++ + NG Q + W+ Q+++ Q I A L +N + +T
Sbjct: 126 AAMQERSKEMEAKLFSNGGVQNVE-QSWINQVTSEGQSIISAA---LSQNQ-GTRLSGVT 180
Query: 184 IDKKN---KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + N R DA+ A + + +L + P+ +++ L + +
Sbjct: 181 VFRFNPDGSFRDRIDANEANLEPGEWRLGGARIHSMTAAPVIQDNLLLKTNLTPAQVRNS 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIF-HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ SF+++ + S S + YR Q+ L+ P +L +M L+AA+VSL F
Sbjct: 241 FATPETVSFWQLPGYIQSSASSGLATAGYR--LQYQKLLARPFLLASMVLVAAAVSLRFF 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R + +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL +E
Sbjct: 299 RFGGVQKMVLSGVAAGFLLYVLSKVTEDLSKAELMYPLAAAWLPVCVGGLTGFLALLHQE 358
Query: 360 DG 361
DG
Sbjct: 359 DG 360
>gi|328544012|ref|YP_004304121.1| permease YjgP/YjgQ [polymorphum gilvum SL003B-26A1]
gi|326413756|gb|ADZ70819.1| Permease YjgP/YjgQ [Polymorphum gilvum SL003B-26A1]
Length = 363
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 187/357 (52%), Gaps = 5/357 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
YF + +LK L L A +L+F+ D+ E+ + GE ++S+ R +++ RVPL+++Q++
Sbjct: 9 YFSRRFLKAILGLFLLAAVLIFLFDVLELLRRAGERGDFSVLRITLISLLRVPLLLEQVL 68
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF L I F L+R ELV++RA GIS+WQ P V+ ++++G+ +V + NP+A
Sbjct: 69 PFAVLFGAIWAFVTLSRALELVVARAAGISVWQFGAPAVLVALIIGLVSVTLYNPMAVWM 128
Query: 128 EKIGIDLIQQWKDNGDK---QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ ++ + Q ++ + W++ + + A+++L T T
Sbjct: 129 QERSNEVAAGIFGTEETFLLQTTNAV-WIRQDGLDGESVLNAEQLLDHGERLLGVTIFTF 187
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D+ R +A A + N LK V+ Y P + ++ + ++
Sbjct: 188 DRAGSFQERIEAREARLRNQFWHLKDVIVYTTESDPQRYGTYEVSTYLTPTEVRESIGAP 247
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S SF+ + + + ++++ + YR Q++ L+ PL+L+AM LIAA+VSL SR
Sbjct: 248 ESISFWNLPRFIELASRAGL-PAYRYTLQYHSLLARPLLLLAMVLIAAAVSLRVSRFGGL 306
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++ GI +GF+LY + + + FG +GI+ P+ AA P + + + ILL +EDG
Sbjct: 307 GGMILGGIIAGFVLYVLSELGRDFGGAGIVPPLVAAWAPGAFGVLMGLTILLNREDG 363
>gi|75675870|ref|YP_318291.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
gi|74420740|gb|ABA04939.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
Length = 365
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 175/362 (48%), Gaps = 9/362 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYF ++ L +L+ ++D E+ + L + S A + RVP +++
Sbjct: 8 LGRYFAGRFMVAALGVFASIFLLLVLVDYIEMVRRTSGLASASALMVAETSLFRVPQLLE 67
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++ PF L+ + + L+R ELV++RA G+S WQ ++P + +I LG+F V NP++
Sbjct: 68 KLTPFCVLIGAMTCYLALSRKLELVVARAAGVSAWQFISPTLACAIALGVFATTVYNPLS 127
Query: 125 TS----GEKIGIDLIQQWKDNGDKQKSDIIPWM-QISNPQQDIFIGAKKILPENHIWEDF 179
++ +++ ++ G S W+ Q+++ Q I I A +
Sbjct: 128 SNLRELSKRMEAEMFGGASGGGLHDASGF--WINQVTDDGQAI-INAALSEQQGVRLTGL 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T D ++ R +A A + + + K V + P+++ + L + Q
Sbjct: 185 TVFRFDPDSRFRERIEAREAALEDGRWLFKGVRRFTLDNPPVEQETFVLPTSLTPAQVQN 244
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ SF+++ + S++S+ F Q++ LI P +L AM ++AASVSL F
Sbjct: 245 SFSTPETVSFWQLPDYIR-SSESSGFATAGYRLQYHKLIAQPFLLAAMVMLAASVSLRFF 303
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R + +V G+ SGF+LY + + + K+ ++ P+AAA +PV + L+LL +E
Sbjct: 304 RFGGVQKMVLSGVGSGFLLYVLSKVTEDLSKAELMNPIAAAWLPVCVGGLTGFLVLLHQE 363
Query: 360 DG 361
DG
Sbjct: 364 DG 365
>gi|288958014|ref|YP_003448355.1| hypothetical protein AZL_011730 [Azospirillum sp. B510]
gi|288910322|dbj|BAI71811.1| hypothetical protein AZL_011730 [Azospirillum sp. B510]
Length = 364
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 163/339 (48%), Gaps = 17/339 (5%)
Query: 32 DLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVIS 91
D E+ + G P+ + +A ++P I QQI PF+ L + F+ L R++ELV++
Sbjct: 34 DTVELLRRAGTKPHVTFGLVVEMALLKLPEIGQQIFPFVILFAGMFTFWRLTRSAELVVA 93
Query: 92 RAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIP 151
RA+G+S WQ L P + + +G+ V ++NP+ + I Q +D K +S +
Sbjct: 94 RAVGVSAWQFLMPVMFAAAAIGVVKVTLVNPVGA----VFIAKYDQLQDRYLKLQSSSLN 149
Query: 152 ------WMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK 205
W++ +N + FI A+ + P + D + R DA A++ K
Sbjct: 150 ISRSGLWLRQTNETEQFFIHAELVNPATFELSNVVVFLFDADQNYLARVDAPSAVLRERK 209
Query: 206 VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA---SRSFYEIIKKMSFSNKS 262
+L+ + + + P +S T IP ++D E FA + SF+E + + + ++
Sbjct: 210 WELQDAILNRAKKDPEKLDSYT--IPTELD-MATIEESFAPPETISFWE-LPRFIHTLET 265
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
F R + L+ P + +AM L AA+ SL R +V G+ +GF+L+ +
Sbjct: 266 TGFPAVRHRLHYQSLLAQPFLFLAMVLFAAAFSLRLPRRGGTMAMVTGGVLTGFVLFVMT 325
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++++FG S + + AA P +++ L I LL EDG
Sbjct: 326 DVVRTFGMSETIPIIMAAWSPAGISLLLGIAALLHLEDG 364
>gi|300023218|ref|YP_003755829.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525039|gb|ADJ23508.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 364
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/362 (27%), Positives = 173/362 (47%), Gaps = 9/362 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEI---QNQMGELPNYSISRGAVLAATRVPL 61
L RY + ++ + L +L+F+ID E+ + G +P ++ R A+L R+P
Sbjct: 7 LTRYIARMFIVAIVTTLTVCALLIFMIDFVELLRMAGKYGAVPGTTLLRIALL---RLPA 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ +I F LV +I LNR SEL + RA G+S+WQ L P + + +GIF + V N
Sbjct: 64 YIEFLIGFAVLVGSISALIYLNRKSELAVMRAGGMSVWQFLGPGLFVGLAVGIFAMAVFN 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
P+A+ G L + N + W++ + + +GA +
Sbjct: 124 PLASRGRATSEKLYAKAFGNEANLLRAQGGGSWIRQNGADGESVLGAAAASNQGLTLTGV 183
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
D++ R DA A + + +L+ + G+ P S L+ + D Q
Sbjct: 184 LVFAYDREGHFSERIDAGSAELKDGYWELQDAWVTRLGQEPEKFKSYLLSTYLTPDRVQD 243
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S SF+++ + + ++K+ + R Q+ L+V P++ +AM L+AA+VSL
Sbjct: 244 ALGTVFSISFWDLPELIQAADKAKL-STERLRVQYQSLLVRPMLCLAMVLLAATVSLRSF 302
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
RS + +VA G+ G + + I + G +G+ AA +PV+L +++S +LL +E
Sbjct: 303 RSGGIQTMVATGMIGGVGFFLLSEIARQIGIAGLAPAWVAAWMPVVLVLAISTTVLLHQE 362
Query: 360 DG 361
DG
Sbjct: 363 DG 364
>gi|92117864|ref|YP_577593.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
gi|91800758|gb|ABE63133.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
Length = 365
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 178/365 (48%), Gaps = 15/365 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYF ++ L +L+ ++D E+ + L + S A + RVP +++
Sbjct: 8 LGRYFASRFVVAALGVFASIFLLLVLVDYIEMVRRTSGLASASAIMVAETSLFRVPQLLE 67
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++ PF L+ + + L+R ELV++RA GIS WQ ++P + +++LG+ NP++
Sbjct: 68 KLTPFCVLIGAMTCYLALSRRLELVVARAAGISAWQFISPALACALVLGVLATTAYNPMS 127
Query: 125 TS----GEKIGIDLIQQWKDNGDKQKSDIIPWM-QISNPQQDIFIGAKKILPENHIWEDF 179
+ +K+ +L G ++ S W+ Q+++ Q I I A + +
Sbjct: 128 ANLRELSKKMEAELFGSVSGGGLQEASGF--WINQVTDDGQAI-INAARSEQQGVRLTGL 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ- 238
T D + R +A A + + + K V + P+++ T +P + Q
Sbjct: 185 TVFRFDPDSTFRERIEAREATLEDGRWLFKGVRRFTLDSPPVEQE--TFVLPTSLTAAQV 242
Query: 239 --KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
FS + SF+++ + S++S+ F Q++ LI P +L AM ++AASVSL
Sbjct: 243 RNSFSTP-ETVSFWQLPGYIR-SSESSGFATAGYRLQYHKLIAQPFLLAAMVMLAASVSL 300
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
F R + +V G+ SGF+LY + + + K+ ++ P+AAA +PV + L+LL
Sbjct: 301 RFFRFGGVQKMVLSGVGSGFLLYVLSKVTEDLSKAELMNPIAAAWLPVCVGGLAGFLVLL 360
Query: 357 QKEDG 361
+EDG
Sbjct: 361 HQEDG 365
>gi|148255227|ref|YP_001239812.1| putative permease [Bradyrhizobium sp. BTAi1]
gi|146407400|gb|ABQ35906.1| putative permease [Bradyrhizobium sp. BTAi1]
Length = 365
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 174/364 (47%), Gaps = 13/364 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYF +L + + +L+ ++D E+ + L + S A + RVP +++
Sbjct: 8 LGRYFAGRFLVSAVGVFASIFVLLVLVDYIEMVRKTSGLASASALMVAETSLFRVPQLLE 67
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++PF L+ + + L+R ELV++RA G+S WQ + P + +I+LG+ + NP++
Sbjct: 68 KMMPFCVLIGAMTCYLALSRRLELVVARAAGVSAWQFIAPALASAIVLGLMATTLYNPMS 127
Query: 125 TS----GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +++ +L G + S W+ NP + I A + + T
Sbjct: 128 ANLRELSKRMEAELFGAAPGGGVQDASGF--WLNQINPDGSVIINAARSEQQGVRLTGLT 185
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ-- 238
D + R +A A + + + K V + P+D+ T +P + Q
Sbjct: 186 LFRFDTEKHFKDRIEAREATLEDGQWVFKSVRRFSLDAPPVDE--PTFILPTSLTPAQVR 243
Query: 239 -KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
FS + SF+++ + S++S+ F Q++ LI P +L AM ++AASVSL
Sbjct: 244 NSFSTP-ETVSFWQLPSYIR-SSESSGFATAGYRLQYHKLIAQPFLLAAMVMLAASVSLR 301
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F R + +V G+ +GF+LY + + + K+ ++ P+ AA +PV + + LL
Sbjct: 302 FFRMGGVQKMVLSGVGAGFLLYVLSKVTEDLSKAALMDPIVAAWLPVFVGGLTGFMALLY 361
Query: 358 KEDG 361
+EDG
Sbjct: 362 QEDG 365
>gi|90423815|ref|YP_532185.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
gi|90105829|gb|ABD87866.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
Length = 362
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/363 (25%), Positives = 176/363 (48%), Gaps = 12/363 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYF ++ L G +L+ +D ++ + G P+ S + RVP +++
Sbjct: 6 LSRYFAGRFVTAALAVFAGLFVLLVFVDYIDLLRRAGGRPSISALLIVQTSVYRVPQLLE 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++PF L+ + + L+R ELV++RA GIS WQ + P + ++ LG+F +V NP++
Sbjct: 66 RLMPFCILIGAMTCYLALSRRLELVVARAAGISAWQFMAPALWSALALGVFATVVFNPMS 125
Query: 125 TSGEKIGIDL-IQQWKDNGDKQKSDIIPWM-QISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ ++ + + + D+ + W+ Q++ Q I I A + + + +
Sbjct: 126 ANMQERAKQMEAEMFGDSSGSLQDASGFWINQVTTEGQAI-INAARSQQQGALLTGLSVF 184
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN----STTLNIPIKMDGFQ 238
+ R +A A + + K + Y P+D++ TTL + + F
Sbjct: 185 RFEPDFSFSERIEAREATLEPGFWRFKNLRRYTLDGPPVDQDVFLLPTTLTLAQVRNSFS 244
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ SF+++ + S++S+ F QF+ L+ P +L AM ++AASVSL F
Sbjct: 245 TPE----TVSFWQLPGYIR-SSESSGFATAGYRLQFHKLLARPFLLAAMVMLAASVSLRF 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL +
Sbjct: 300 FRFGGVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGSLAGFLALLHQ 359
Query: 359 EDG 361
EDG
Sbjct: 360 EDG 362
>gi|85716330|ref|ZP_01047303.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
gi|85696846|gb|EAQ34731.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
Length = 365
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 177/362 (48%), Gaps = 9/362 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYF +L L + +L+ ++D E+ + L + S A + RVP +++
Sbjct: 8 LGRYFAGRFLVAALGVFVSIFLLLVLVDYIEMVRRTSGLASASALVVAETSLFRVPQLLE 67
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++ PF L+ + + L+R ELV++RA G+S WQ ++P + +I+LG V NP++
Sbjct: 68 KLTPFCVLIGAMTCYLALSRQLELVVARAAGVSAWQFISPALACAIVLGALATTVYNPLS 127
Query: 125 TS----GEKIGIDLIQQWKDNGDKQKSDIIPWM-QISNPQQDIFIGAKKILPENHIWEDF 179
+ +++ +L G + S W+ Q+++ Q I I A + +
Sbjct: 128 ANLRELSKRMEAELFGGVSGGGLQDASGF--WINQVTDDGQAI-INAARSEQQGVRLTGL 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T + ++ R +A A + + + K V + P+++ + L+ + Q
Sbjct: 185 TVFRFNPHSRFEERIEAREAALEDGRWLFKGVRRFTLDNPPVEQETFVLSTSLTPAQVQN 244
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ SF+++ + S++S+ F Q++ LI P +L AM ++AASVSL F
Sbjct: 245 SFSTPETVSFWQLPGYIK-SSESSGFATAGYRLQYHKLIAQPFLLAAMVMLAASVSLRFF 303
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R + +V G+ SGF+LY + + + K+ ++ P+AAA +PV + L+LL +E
Sbjct: 304 RFGGVQKMVLSGVGSGFLLYVLSKVTEDLSKAELMNPIAAAWLPVCVGGLTGFLVLLYQE 363
Query: 360 DG 361
DG
Sbjct: 364 DG 365
>gi|296116657|ref|ZP_06835267.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
23769]
gi|295976869|gb|EFG83637.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
23769]
Length = 371
Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 174/362 (48%), Gaps = 15/362 (4%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
F Y + + FL G L+ + D ++ ++ PN S + +A +P + +I+PF
Sbjct: 15 FTYAVLAVIAFLTG---LITLFDFIDLLRRVSSRPNVPASLVSEIAVLHIPFAMLEILPF 71
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ I+ F+ L R+SELV++RA GIS WQ L V ++L+G + VI+P++++ +
Sbjct: 72 GVLLGGIICFWRLARSSELVVARAAGISAWQFLAGPVGCALLIGALSTTVISPLSSAMYR 131
Query: 130 IGIDLIQQWKDNGDKQK---SDIIPWMQISNP----QQDIFIGAKKILPENHIWEDFTSI 182
L QQ+ + S WM+ S+ I A+++ +++ + I
Sbjct: 132 RAEILDQQYLRESTVKTINMSGGALWMRQSDSGLVDHGVAIIHARRVRLRDNVMR-ISGI 190
Query: 183 TI---DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+I D ++ ++ R +A + N + L+ P+D TL + + G Q
Sbjct: 191 SIFRLDGQDHMLARIEAGHGYLGNGRWVLEGARLLHPDENPVDMGHMTLRADLTLAGVQD 250
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S + + + N+S F + R +F L+ +P++ M L+AA S+ +
Sbjct: 251 SLASPNTLSVWALPGFIKLLNRSG-FSSIRHRLRFQSLLTLPVLCGTMALVAAGFSMRPA 309
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R +++ G+ +GF L+ I I FG+SG L PV AA P + L++ +LL E
Sbjct: 310 RRGGVVRMISLGVGAGFALFAISKIAAQFGESGALPPVLAAWAPTGAGLCLAVSLLLHLE 369
Query: 360 DG 361
DG
Sbjct: 370 DG 371
>gi|158425948|ref|YP_001527240.1| permease precursor [Azorhizobium caulinodans ORS 571]
gi|158332837|dbj|BAF90322.1| permease precursor [Azorhizobium caulinodans ORS 571]
Length = 363
Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 166/372 (44%), Gaps = 35/372 (9%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
YF + + + + L+ ++D E+ + + S A+L R P +Q++
Sbjct: 9 YFARRFFASVTMIFFSCVGLIMLVDFLEMARRTADRDTVSAVTVALLTIYRTPAFTEQLL 68
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF L + F L+R ELV++RA+G+S+WQ +P ++ + L+G+F V NP++
Sbjct: 69 PFAVLFGGMATFVTLSRKLELVVARAVGLSVWQFTSPALLVAFLIGVFATCVFNPVSAD- 127
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIP-------------WMQISNPQQDIFIGAKKILPENH 174
+K+ ++ +++I W++ + I A
Sbjct: 128 ----------FKERANRMEAEIFNTASGVFTQGTSGFWIRQQSVDGQAIIQAAASQQGGR 177
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST--TLNIPI 232
T D+ K+ R +A AI+ + +K+ +P T T +
Sbjct: 178 QLTGVTVFEFDRNGKLTDRVEAKSAILGDGYWTMKEARVL----VPGSDQQTFETYLLAT 233
Query: 233 KMDGFQKFSEQFASR---SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
K+D ++ E S SF+++ +S + +S F R Q L+ P +LVAM L
Sbjct: 234 KLDP-KQIQESLVSPETVSFWQLPDAISNAEQSG-FGAARYRLQLQSLLARPFLLVAMVL 291
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
IAA V L R + G+ +GF+LY + + G +G++ P+AAA P + I
Sbjct: 292 IAAVVGLRVFRFGGVGQTILGGVLAGFLLYLGTKLAEDLGDAGVVHPIAAAWFPALAGIF 351
Query: 350 LSILILLQKEDG 361
+ +LILL +EDG
Sbjct: 352 MGVLILLHREDG 363
>gi|115525295|ref|YP_782206.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisA53]
gi|115519242|gb|ABJ07226.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
BisA53]
Length = 361
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 173/360 (48%), Gaps = 7/360 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMG--ELPNYSISRGAVLAATRVPLI 62
L RYF ++ + LG +L+ +D ++ + G +P I++ ++ RVP +
Sbjct: 6 LGRYFAGKFVTAAVGVFLGLFVLLVFVDYIDLLRRSGGRAIPALLIAQTSMF---RVPQL 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++++PF L+ + + L+R ELV++RA G+S WQ + P + ++LLG F +V NP
Sbjct: 63 LERLMPFCILIGAMTCYLALSRRLELVVARAAGVSAWQFMAPALWSALLLGTFATMVFNP 122
Query: 123 IATS-GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ + E+ + + D+ + W+ N + I A + + T
Sbjct: 123 VSANLQERAKQNEASMFGDSSGSLQDASGFWINQVNSEGQAIINASHSQQQGVLLTGLTV 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
R +A A + +LK V Y P+++++ L + +
Sbjct: 183 FRFATDFSFKDRLEAREATLEPGFWRLKSVRRYSLDAPPVEEDTLLLPTTLTQAQVRNSF 242
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ SF+++ + S++S+ F Q++ L+ P +L AM ++AASVSL F R
Sbjct: 243 STPETVSFWQLPSYIR-SSESSGFATAGYRLQYHKLLARPFLLAAMVMLAASVSLRFFRF 301
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + + LL +EDG
Sbjct: 302 GGVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVFVGGLAGFMALLYQEDG 361
>gi|312113657|ref|YP_004011253.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
17100]
gi|311218786|gb|ADP70154.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
17100]
Length = 363
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 168/376 (44%), Gaps = 42/376 (11%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY K + T L ++L+F +D E+ G + S A++ R+P+ +
Sbjct: 9 RYMAKRFAITILGVFFVTLLLIFFVDFVEVLRS-GARKDVSAGTLALITLLRIPIFAELT 67
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+PF L+ I F +L+RTSEL I RA G+S+WQ + P ++ +I G+F V V NP+A++
Sbjct: 68 LPFAILIGTIAAFLSLSRTSELTIMRAAGLSVWQFVQPALIVAIFFGVFAVTVYNPVASA 127
Query: 127 ----GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
EKI ++ Q K + + W++ + + AK T +
Sbjct: 128 MKAKSEKIQAEIFQSEKSFATSRGTG--SWLRQESVDGPTILHAKTSADRGLTLAGVTLL 185
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
D N+ + A+ A + +L+ V+ G D +++ E
Sbjct: 186 QFDPANRFYEQIQANKAELRQGYWRLEGVIVQSSG-----------------DAVRRYDE 228
Query: 243 QFASR-----------------SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
F S SF+++ ++F+ K+ + + E Q + P+++
Sbjct: 229 YFVSTYLGPAQIMNSLGSLETLSFWDLPGFIAFAGKAGL-PTRQYELQHQLFLARPILMA 287
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
AM LIAA+ SL+ R + + +V G+ GF + + + G SG++ AA P +
Sbjct: 288 AMVLIAATCSLKAFRFGKIQTMVLTGLTGGFGFFIFSELSRKVGASGLVPVTVAAWGPAL 347
Query: 346 LTISLSILILLQKEDG 361
+ + LS +LL +EDG
Sbjct: 348 VALLLSATVLLYQEDG 363
>gi|114328862|ref|YP_746019.1| hypothetical protein GbCGDNIH1_2198 [Granulibacter bethesdensis
CGDNIH1]
gi|114317036|gb|ABI63096.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
CGDNIH1]
Length = 370
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 166/353 (47%), Gaps = 39/353 (11%)
Query: 32 DLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVIS 91
D E+ + P+ S + +AA R+P + I+PF L+ I F+ L R+SELV++
Sbjct: 34 DFIELLRRAATKPDVSFGLVSTIAALRLPWMSITILPFAVLLGGIGAFWRLTRSSELVVA 93
Query: 92 RAIGISIWQLLNPFVVGSILLGIFTVLVINPIA----------------TSGEKIGIDLI 135
RA GIS WQ L V + LLG+ + VI+P++ TSG + +
Sbjct: 94 RAAGISAWQFLALPVGAAALLGMLAMTVISPLSSVMLSRAEQLDNTYLRTSGGPMRLAGG 153
Query: 136 QQW---KDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII 191
Q W D G D II MQ++ K L + I T +D +++++
Sbjct: 154 QLWLRQSDPGLDPHGVSIIHAMQVA--------AHKNSLQASSI----TVFRLDSEDRLV 201
Query: 192 HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR---S 248
R +A A + + + L + +P + T+ IP + ++ E FAS S
Sbjct: 202 QRIEAATARLVSGQWVLDNARVLRPSHLPDPPH--TVEIPTDLT-VRRIQESFASPDTLS 258
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
F+ + + ++S F + R +F L+ +PL+ M L+AA S+ SR ++
Sbjct: 259 FWSLPDFIRLLDRSG-FSSLRHRLRFQSLLALPLLCATMALVAAGFSMRPSRRGGVAKMI 317
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
G+ +GF L+ + + + FG+SG + V AA P + + L++ +LL EDG
Sbjct: 318 GSGVAAGFCLFVVSKVAEEFGQSGTVPVVLAAWAPSVAGLMLAVALLLHLEDG 370
>gi|27379217|ref|NP_770746.1| permease [Bradyrhizobium japonicum USDA 110]
gi|27352368|dbj|BAC49371.1| bll4106 [Bradyrhizobium japonicum USDA 110]
Length = 363
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/365 (26%), Positives = 177/365 (48%), Gaps = 15/365 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYF ++ L +L+ ++D E+ + L + S A + RVP +++
Sbjct: 6 LGRYFAGRFVVAALGVFASIFLLLVLVDYIEMVRKTSGLASASAIMVAETSLFRVPQLLE 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++ PF L+ + + L+R ELV++RA G+S WQ ++P + ++L+G+ + NP++
Sbjct: 66 KLTPFCMLIGAMTCYLALSRRLELVVARAAGVSAWQFISPALGSALLIGVIATVAYNPMS 125
Query: 125 TS----GEKIGIDLIQQWKDNGDKQKSDIIPWM-QISNPQQDIFIGAKKILPENHIWEDF 179
+ +++ +L G + S W+ Q++N Q I I A + +
Sbjct: 126 ANLRELSKRMEAELFGSAPGGGIQDASGF--WLNQVTNDGQTI-INAARSEQQGVRLTGL 182
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ- 238
T D + R +A A + + + V + PI++ L IP + Q
Sbjct: 183 TLFRFDTEQHFKERVEAREAELEVGQWIFRNVRRFSLDGPPIEQ--AVLAIPTTLTEAQV 240
Query: 239 --KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
FS + SF+++ + S++S+ F Q++ L+ P +L AM ++AASVSL
Sbjct: 241 RNSFSTP-ETVSFWQLPSYIR-SSESSGFATAGYRLQYHKLLAQPFLLAAMVMLAASVSL 298
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
F R + +V G+ +GF+LY + + + K+ ++ P+AAA +PV++ L LL
Sbjct: 299 RFFRMGGVQKMVLSGVGAGFLLYVLSKVTEDLSKAELMHPIAAAWLPVVVGGLTGFLALL 358
Query: 357 QKEDG 361
+EDG
Sbjct: 359 YQEDG 363
>gi|217978371|ref|YP_002362518.1| permease YjgP/YjgQ family protein [Methylocella silvestris BL2]
gi|217503747|gb|ACK51156.1| permease YjgP/YjgQ family protein [Methylocella silvestris BL2]
Length = 361
Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 177/363 (48%), Gaps = 13/363 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYF +L L + +VFV+D E+ + +LP+ S A+LA R P +
Sbjct: 6 LGRYFSARFLTLILAVFVTICGMVFVVDFVEMLRRTTDLPDASPRSVALLAMLRAPSASE 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q++PF L ++ F +L R EL+I+RA+G+S+W L P + +I++GI +V++ NP++
Sbjct: 66 QLMPFCVLCGSMAAFLDLTRKLELLIARAVGVSVWGFLVPPIAIAIVIGIGSVMLFNPVS 125
Query: 125 TS----GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +KI +++ + +Q +D W++ + D I A+ + + T
Sbjct: 126 AAMKQRADKIEVEIFGRLT----QQNADADIWIRQKSVDGDAIIKARTMSRDGSRLTKPT 181
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL--NIPIKMDGFQ 238
D +K +A+ A + + + ++ G I+ + L N+
Sbjct: 182 VYIYDDHDKFEAEVEAEHAQLSDGVWRFEQARILMPGEETIETSVYLLASNLTPAQVARG 241
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S Q S +F+++ ++++ + + + QF L+ PL+ VAM LIAA+ SL F
Sbjct: 242 PISPQ--SVAFWDLDAARRQTDRAGL-DSTAYKLQFQSLLARPLLFVAMVLIAAAFSLRF 298
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R +V G+ +GF+LY ++ G +G++ AA P ++ L L LL +
Sbjct: 299 FRFGGIEKMVGGGVAAGFVLYVATKLVGDLGGAGLVSAPVAAWSPAVIASMLGALALLNQ 358
Query: 359 EDG 361
EDG
Sbjct: 359 EDG 361
>gi|170743204|ref|YP_001771859.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
gi|168197478|gb|ACA19425.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
Length = 362
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 162/360 (45%), Gaps = 7/360 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY +L+ L LV+ +D E+ + GE P S A L+ R P + +
Sbjct: 7 LGRYIAARFLRMIAGVFLTVFALVYTLDFVELMRRAGEAPGASALTVAHLSLLRTPAVAE 66
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
QI+PF L + L+R ELV++RA GIS WQ L P V+ ++ +G V NP+A
Sbjct: 67 QIMPFAILFGAMGALLQLSRKLELVVARAAGISAWQFLQPGVLVAVGIGALMVGAYNPLA 126
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
S ++ + + K W++ + + A + T T
Sbjct: 127 ASLKQRSTQVEARIFARSTKGGLSNDLWIRQRSVDGQAIVRASTAIEGTTSLAGVTIFTF 186
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLK--KVVEYQYGRIPIDKNSTTLNI-PIKMDGFQKFS 241
D + + +A A +++ +L+ +V+ G D N+ P ++ Q+ +
Sbjct: 187 DAQGAFGQQIEARRATLHDGYWELQDARVLTQDSGPESYDTYLVASNLAPSQVR--QRVT 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S F+++ + ++ S ++ + R Q L+ P++ VAM L+AASVSL F R
Sbjct: 245 PP-DSVPFWQLSETIARSERAGL-DAARYRLQRAVLLARPMLFVAMVLVAASVSLRFFRF 302
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ G+ +GF LY +M+ G SGI+ AA P ++ L L LL +EDG
Sbjct: 303 GGIGRMALAGVAAGFALYVARQVMEGLGASGIVAAPVAAWFPAVVGSLLGTLALLYQEDG 362
>gi|323137698|ref|ZP_08072774.1| permease YjgP/YjgQ family protein [Methylocystis sp. ATCC 49242]
gi|322396995|gb|EFX99520.1| permease YjgP/YjgQ family protein [Methylocystis sp. ATCC 49242]
Length = 361
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 164/357 (45%), Gaps = 5/357 (1%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYF +++T L L+FV+ E+ + + P A++ A +VP + I
Sbjct: 8 RYFAWRFMRTILAIFFTIFCLMFVVVFVEMLRRASDNPQAGAGMVALMTAMKVPAAAEMI 67
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+PF L ++ F +L R EL+++RA G+S+WQ + P V+ ++L+G+F+V V NP++ S
Sbjct: 68 LPFAVLFGSMATFVDLTRKLELIVARAAGMSVWQFITPPVLTALLIGVFSVAVYNPLSAS 127
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ + + + D W++ + A + F S+ I
Sbjct: 128 MKQRSDQMELELFGVPGSLRIDHGVWLRQHGVDGLAVMHAMGT-AKGGTELTFVSVNIYS 186
Query: 187 KN-KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
N + R +A A + L + G S L + + +
Sbjct: 187 PNGGFLERVEAQSARLEPGVWVLNGAIVSAPGEPARPVASYMLATDLTPEQAAAATTPPQ 246
Query: 246 SRSFYEIIKKMSFSNKSNI-FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
F+E+ + + + ++ + YR QF L+ PL+LVAM L+AAS SL F R
Sbjct: 247 GTPFWELPEMTARTTEAGLDSTGYR--LQFQTLLARPLLLVAMVLVAASFSLRFFRFGGV 304
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++ G+ +GF+LY + ++ G +G++ P+ AA P ++ L L LL EDG
Sbjct: 305 AKTLSGGVAAGFVLYIVTKVLSDLGGAGLISPLVAAWSPALVGSMLGTLTLLYSEDG 361
>gi|298291095|ref|YP_003693034.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
gi|296927606|gb|ADH88415.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
Length = 361
Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/367 (26%), Positives = 167/367 (45%), Gaps = 27/367 (7%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
YF + +L L +G L+ +IDL E+ ++GE + +L R+P +Q++
Sbjct: 9 YFGRRFLGAVLGIFVGCAGLIMLIDLLELSRRVGE-RDVDFGTLMLLVVYRMPFFTEQLL 67
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF L I F L+R ELV++RA GIS WQ + P + ++LLG+F+ V NP++
Sbjct: 68 PFAVLFGAIGTFLTLSRRLELVVARAAGISAWQFIAPACLLALLLGVFSTTVYNPVSAD- 126
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIP-------------WMQISNPQQDIFIGAKKILPENH 174
+KD + +++I WM+ + I A
Sbjct: 127 ----------FKDRASRLEAEIFNRQTGLFAMTTGGFWMRQQSVDGQAIIQAAATSDGGR 176
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+K+ R +A AI+ +L+ G + ++ L +
Sbjct: 177 QLTGVNVFLFGADDKLTERIEAVRAILEPGAWRLEHARVLTPGIGLQEYDAYMLATNLTP 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ Q+ + Q + F+++ + + + F R Q+ L+ P++L+AM LIAASV
Sbjct: 237 NQVQE-TLQSDTVPFWQLPAAIDAATRVG-FGAERYRLQYQSLLARPMLLLAMVLIAASV 294
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
SL R + G+ +GF+LY + + G++GI+ PV AA P ++ + ILI
Sbjct: 295 SLRVFRFGGIGQTILGGVAAGFLLYVSTKLAEDLGEAGIVHPVIAAWFPAVVGALMGILI 354
Query: 355 LLQKEDG 361
LL +EDG
Sbjct: 355 LLHREDG 361
>gi|329114151|ref|ZP_08242913.1| Lipopolysaccharide export system permease protein LptG [Acetobacter
pomorum DM001]
gi|326696227|gb|EGE47906.1| Lipopolysaccharide export system permease protein LptG [Acetobacter
pomorum DM001]
Length = 370
Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/380 (23%), Positives = 178/380 (46%), Gaps = 39/380 (10%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + ++ + + + +V + D ++ ++ P+ S + +AA VP
Sbjct: 7 LSRYIARQFVFSVVAMIASLTGIVCLFDFIDLLRRVATKPDVSTNVVTEIAALHVPYFAT 66
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+I+PF L+ IV F+ L R+SEL+++RA GIS WQ L V ++L+G +I+P++
Sbjct: 67 EILPFGMLLGGIVCFWRLTRSSELIVARAAGISAWQFLTAPVACAMLIGALFTTLISPVS 126
Query: 125 TSGEKIGIDLIQQWKDN-----------GDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
+S + +L QQ+ ++SD +P + A+ + ++
Sbjct: 127 SSMYRRAEELDQQYLRTGGGPLSLSSGSLWLRQSD-----SQYDPHGVAMLHARGVQLKD 181
Query: 174 HIW--EDFTSITIDKKNKIIHRKDADLA-------IIYNDKVKLKKVVEYQYGRIPIDKN 224
+ + + +D ++K++ R +A I+ + V + + G+I + +
Sbjct: 182 GLLRIRNVSVFRLDHQDKLMMRIEAPEGYLGTLKWILSDASVVRPNDLLHHVGQIDLPTD 241
Query: 225 STTLNIPIKMDGFQKFSEQFASR---SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
T + E F+S S + + +S ++S F + R F L+ +P
Sbjct: 242 LTV----------NRVQESFSSPETLSVWALPGFISLLDRSG-FSSIRHRIHFQSLLALP 290
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
++ M L+AA S+ SR ++ G+ +GF+L+T+ + + FG SG L P+ AA
Sbjct: 291 MLAGTMALVAAGFSMRPSRRGGVARMIGSGVAAGFLLFTVSKVAEQFGNSGALPPMLAAW 350
Query: 342 IPVILTISLSILILLQKEDG 361
P + + L++ +LL EDG
Sbjct: 351 APTLAGLCLAVSLLLHLEDG 370
>gi|258542096|ref|YP_003187529.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
gi|256633174|dbj|BAH99149.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
gi|256636231|dbj|BAI02200.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
gi|256639286|dbj|BAI05248.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
gi|256642340|dbj|BAI08295.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
gi|256645395|dbj|BAI11343.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
gi|256648450|dbj|BAI14391.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
gi|256651503|dbj|BAI17437.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654494|dbj|BAI20421.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
Length = 370
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/380 (23%), Positives = 178/380 (46%), Gaps = 39/380 (10%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + ++ + + + +V + D ++ ++ P+ S + +AA VP
Sbjct: 7 LSRYIARQFVFSVVAMIASLTGIVCLFDFIDLLRRVATKPDVSTNVVTEIAALHVPYFAT 66
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+I+PF L+ IV F+ L R+SEL+++RA GIS WQ L V ++L+G +I+P++
Sbjct: 67 EILPFGMLLGGIVCFWRLTRSSELIVARAAGISAWQFLTAPVACAMLIGAVFTTLISPVS 126
Query: 125 TSGEKIGIDLIQQWKDN-----------GDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
+S + +L QQ+ ++SD +P + A+ + ++
Sbjct: 127 SSMYRRAEELDQQYLRTGGGPLSLSSGSLWLRQSD-----SQYDPHGVAMLHARGVQLKD 181
Query: 174 HIW--EDFTSITIDKKNKIIHRKDADLA-------IIYNDKVKLKKVVEYQYGRIPIDKN 224
+ + + +D ++K++ R +A I+ + V + + G+I + +
Sbjct: 182 GLLRIRNVSVFRLDHQDKLMMRIEAPEGYLGTLKWILSDASVVRPNDLLHHVGQIDLPTD 241
Query: 225 STTLNIPIKMDGFQKFSEQFASR---SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
T + E F+S S + + +S ++S F + R F L+ +P
Sbjct: 242 LTV----------NRVQESFSSPETLSVWALPGFISLLDRSG-FSSIRHRIHFQSLLALP 290
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
++ M L+AA S+ SR ++ G+ +GF+L+T+ + + FG SG L P+ AA
Sbjct: 291 MLAGTMALVAAGFSMRPSRRGGVARMIGSGVAAGFLLFTVSKVAEQFGNSGALPPMLAAW 350
Query: 342 IPVILTISLSILILLQKEDG 361
P + + L++ +LL EDG
Sbjct: 351 APTLAGLCLAVSLLLHLEDG 370
>gi|154246776|ref|YP_001417734.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
gi|154160861|gb|ABS68077.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
Length = 364
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/381 (26%), Positives = 166/381 (43%), Gaps = 44/381 (11%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + + + L + L+ ++D E+ + + ++ A++ R P
Sbjct: 5 ILGFYFARRFASAVVLIFLSCVTLIVLVDFLEMARRTADREQVTVGLLALVTLYRAPSFT 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+Q++PF L I F L+R ELV++RA+G+S+WQ + P V+ + L+G+F+ V NP+
Sbjct: 65 EQLMPFAVLFGAISTFVLLSRRLELVVARAVGLSVWQFITPPVLVAFLIGVFSTTVFNPV 124
Query: 124 AT---------SGEKIGIDLIQQWKDNGDKQKSDIIP------WMQISNPQQDIFIGAKK 168
+ GE G S ++P W++ + I A+
Sbjct: 125 SADFKERANQIEGEIFG------------SSSSGLLPQGKKEFWVRQQSVDGQSIIQAQA 172
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDA------DLAIIYNDKVKLKKVVEYQYGRIPID 222
DK ++++ R +A D A I D L +++Q+
Sbjct: 173 TRQGGRALSGVVVFEFDKADRLVERVEARSATLGDGAWILTDARVLVPGLDHQH------ 226
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASR--SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
T I +D Q A SF+++ + + +S F R Q L+
Sbjct: 227 --YDTYLIATNLDPKQIQESLIAPETVSFWQLPAAIRSAEQSG-FGAERYRLQLQSLLAR 283
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
P +LVAM LIAA V L R + G+ +GF+LY + + G +G + PVAAA
Sbjct: 284 PFLLVAMVLIAAVVGLRVFRFGGVGQTILGGVLAGFLLYVGTKLAEDLGDAGFVHPVAAA 343
Query: 341 LIPVILTISLSILILLQKEDG 361
P + I L +LILL +EDG
Sbjct: 344 WFPAVAGILLGVLILLHREDG 364
>gi|163853055|ref|YP_001641098.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
gi|218531865|ref|YP_002422681.1| permease YjgP/YjgQ family protein [Methylobacterium
chloromethanicum CM4]
gi|240140388|ref|YP_002964867.1| putative permease [Methylobacterium extorquens AM1]
gi|254562992|ref|YP_003070087.1| permease [Methylobacterium extorquens DM4]
gi|163664660|gb|ABY32027.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
gi|218524168|gb|ACK84753.1| permease YjgP/YjgQ family protein [Methylobacterium
chloromethanicum CM4]
gi|240010364|gb|ACS41590.1| putative permease [Methylobacterium extorquens AM1]
gi|254270270|emb|CAX26266.1| putative permease [Methylobacterium extorquens DM4]
Length = 362
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/361 (25%), Positives = 168/361 (46%), Gaps = 9/361 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYF +++T L L LV+ +D E+ + G+ S A LA R P + +
Sbjct: 7 LGRYFAWRFVRTILGVFLTVFALVYTLDFVELLRRAGDAEGASPGLMAQLALYRTPAVAE 66
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++PF L ++ L+R ELV++RA GIS WQ L P ++ +G + NP++
Sbjct: 67 SVLPFAVLFGSMAALLQLSRKLELVVARAAGISAWQFLQPGAFVALAIGALAIGAYNPLS 126
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ ++ ++ + K + W++ + I A+ + T
Sbjct: 127 AALKQRSSEIEAKIFAKSTKAGTGKDLWLRQRSIDGQAIIRAETAVEGTTTLAGVTVFQF 186
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN----STTLNIPIKMDGFQKF 240
D+ + +A A +++ +L+ V P ++TL+ P ++ Q+F
Sbjct: 187 DEAGAFAAQLEAARATLHDGWWELRDVRVLTRDEPPESHEVYLVASTLD-PSQIR--QRF 243
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S F+++ + ++ ++ + R Q+ L+ PL+ +AM L+AA+VSL F R
Sbjct: 244 TPP-ESVPFWQLPETIARHERAGL-DATRYRLQYDVLLATPLLYLAMVLVAATVSLRFFR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+V G+ +GF+LY +M+ G SG++ P AA P ++ L L LL +ED
Sbjct: 302 FGGVGKLVLGGVSAGFVLYVARQVMEGLGASGMVAPTVAAWFPAVVGSLLGTLTLLYQED 361
Query: 361 G 361
G
Sbjct: 362 G 362
>gi|114797396|ref|YP_760970.1| YjgP/YjgQ permease [Hyphomonas neptunium ATCC 15444]
gi|114737570|gb|ABI75695.1| putative permease, YjgP/YjgQ family [Hyphomonas neptunium ATCC
15444]
Length = 373
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/373 (24%), Positives = 164/373 (43%), Gaps = 26/373 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + L + L ++ + +ID+ E +G ++ L+ ++P+II+Q
Sbjct: 9 RYILRECLSGLVLVLGILLLAILMIDVVEQMRTIGGDVEITLLDALRLSLMKLPMIIEQT 68
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT- 125
+PF L ++ F LNR SEL I RA G+S W+ L P +V + LGIF+ L +NP+A
Sbjct: 69 LPFALLAATMMAFTRLNRRSELSIIRASGLSAWRFLTPVIVLGVALGIFSSLALNPLAAR 128
Query: 126 -----SGEK-----IGIDLIQ-----QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL 170
E+ +G +++Q W GD +I ++ + + + KI+
Sbjct: 129 LSQSFEAERARLLDVGREVVQVAETGVWLRQGDDSSQYVIHARRVEDGGRTLL--DVKII 186
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI 230
E ++ + R DA+ A++ +L+ +VE + P + TL I
Sbjct: 187 EEQRLYNGRQPT---NDFAFVRRIDAEKAVLNEGFWQLENLVENLPNQAP--ERRATLAI 241
Query: 231 PIKMDGFQKFSEQFASRS--FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
P +D + E + + F+E + + F ++ R + + L P++ AM
Sbjct: 242 PTSLDAVRLLDEYASPNTVGFWE-LPRFIFETRAAGLDTSRYTMRLFTLTATPVLFTAMA 300
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
LI A L R ++A G+ + LY S G +G V AA P + +
Sbjct: 301 LIGALACLRLQRLGGTSRLLATGVLAAIGLYFFTQFSSSLGSTGAAPAVVAAWSPPLFVL 360
Query: 349 SLSILILLQKEDG 361
+S+ + +EDG
Sbjct: 361 FVSLAFIAYREDG 373
>gi|220925666|ref|YP_002500968.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
2060]
gi|219950273|gb|ACL60665.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
2060]
Length = 362
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 159/360 (44%), Gaps = 7/360 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L+ L LV+ +D E+ + GE A L+ R P I +
Sbjct: 7 LGRYIAGRLLRMIAGVFLTVFALVYTLDFVELMRRAGETQGIGALTVARLSLLRTPSIAE 66
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
QI+PF L + L+R ELV++RA GIS WQ L P V ++ +G V NP+A
Sbjct: 67 QIMPFAILFGAMGALLQLSRKLELVVARAAGISAWQFLQPGVFVALAVGALMVGAYNPMA 126
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ ++ ++ + ++ S W++ + + A+ + +
Sbjct: 127 AALKQHSTEIEARIFSRSNRGGSGKDLWIRQRSVDGQAIVRAETAIEGTTTLAGVSVFAF 186
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN---IPIKMDGFQKFS 241
D + + +A A +++ +L+ P ++ + +P ++ Q+F+
Sbjct: 187 DDQGTFTQQIEARQATLHDGYWELQDARVLAKDSQPESYDTYLVASNLVPSQVR--QRFT 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S F+++ ++ S ++ + R Q L+ P++ VAM L+AASVSL F R
Sbjct: 245 PP-DSVPFWQLGDTIARSERAGL-DATRYRLQRAVLLARPMLFVAMVLVAASVSLRFFRF 302
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ G+ +GF LY +M+ G SGI+ AA P ++ L L LL +EDG
Sbjct: 303 GGIGRMALAGVAAGFALYVARQVMEGLGASGIVAAPVAAWFPAVVGSLLGTLALLYQEDG 362
>gi|330993928|ref|ZP_08317858.1| Lipopolysaccharide export system permease protein lptG
[Gluconacetobacter sp. SXCC-1]
gi|329758874|gb|EGG75388.1| Lipopolysaccharide export system permease protein lptG
[Gluconacetobacter sp. SXCC-1]
Length = 371
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/373 (25%), Positives = 174/373 (46%), Gaps = 30/373 (8%)
Query: 8 YFFKYYLKTTLY---FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
Y + + TL FL G L+ + D ++ ++ PN S + +A +P
Sbjct: 10 YIARQFTGATLAVIAFLTG---LITMFDFIDLLRRVSTRPNVPTSLVSQIAFLHIPFACL 66
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+I+PF L+ I+ F+ L R+SELV++RA GIS WQ L V+ ++L+G ++P++
Sbjct: 67 EILPFGVLLGGILCFWRLARSSELVVARAAGISAWQFLAGPVICAVLIGAMATTCVSPLS 126
Query: 125 TSGEKIGIDLIQQW-KDNGDKQ--KSDIIPWMQ-----ISNPQQDIFIGAKKILPENHIW 176
+ + L +Q+ +DN K S W++ + + DI I A+++ +
Sbjct: 127 SVMYRRAEALDRQYLRDNNGKSLNLSGGTLWLRQGDNGLVDHGVDI-IHARQVRLNGGVL 185
Query: 177 E--DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
T + + ++ R +A + + L+ + +P D TL+ + +
Sbjct: 186 HIGGITIFRLGPDDGLLTRIEAQSGYLGGGRWILEGARMLRPDEMPSDMGRFTLHADLTL 245
Query: 235 DGFQKFSEQFASRSFYEI------IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
G + E FAS + I++++ S S I H F L+ +P++ M
Sbjct: 246 AGVE---ESFASPDTLSVWALPGFIRQLNRSGFSTIRHRL----HFQSLLTLPVLSGTMA 298
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+AA S+ +R +++ G+ +GF L+ + I FG++G L PV AA P +
Sbjct: 299 LVAAGFSMRPARRGGVIRMISSGVAAGFALFALSKIAAQFGETGTLPPVLAAWAPTGAGL 358
Query: 349 SLSILILLQKEDG 361
L++ +LL EDG
Sbjct: 359 CLAVTLLLHLEDG 371
>gi|182677644|ref|YP_001831790.1| permease YjgP/YjgQ family protein [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182633527|gb|ACB94301.1| permease YjgP/YjgQ family protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 362
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 160/364 (43%), Gaps = 26/364 (7%)
Query: 13 YLKTTLYFLLGAMI-----LVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
YL + F++ A+ +++VIDL E+ + G P + S A L+ R P + +QI+
Sbjct: 10 YLSSRFLFMILAVFGTIFSMIYVIDLVEMLRRAGNRPGATASLIAFLSFLRAPSVSEQIL 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT-- 125
PF L + F NL R EL+++RA GISIWQL+ P + ++ +GIF+V + NPI+
Sbjct: 70 PFCVLFGTMATFINLTRRLELLVARAAGISIWQLMMPPLGIALAIGIFSVTLYNPISAMM 129
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
GI+ G + K + W++ ++ I A+ + T T
Sbjct: 130 KHRADGIETELFGGIGGQETKGGL--WIRQNSVDGQAIIRAETVEAGGSRLGGVTLYTYG 187
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKV------VEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
K R +A A + ++ + E Q + + + T +
Sbjct: 188 KDGSFEARIEARHAKLVPGVWQMTEARIIVPGEEIQEAGLYLLATNLTPG---------E 238
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNI--FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
SE + + SF + + + R QF L+ PL +AM LIAA+ SL
Sbjct: 239 VSENIVTPESVPFWELQSFRAATELAGLDSTRYRLQFQLLLARPLFFIAMVLIAAAFSLR 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F R +V G +GF+LY + G SG+L AA P ++ L L LL
Sbjct: 299 FFRFGGITKMVCGGAGAGFVLYIVSKFTGDLGTSGLLSAPIAAWSPAVVASMLGALALLN 358
Query: 358 KEDG 361
+EDG
Sbjct: 359 QEDG 362
>gi|188583149|ref|YP_001926594.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
gi|179346647|gb|ACB82059.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
Length = 362
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/361 (25%), Positives = 167/361 (46%), Gaps = 9/361 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYF +++T L L LV+ +D E+ + G+ S A LA R P + +
Sbjct: 7 LGRYFAWRFVRTILGVFLTVFALVYTLDFVELLRRAGDSEGASTGLMAQLALYRTPAVAE 66
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++PF L ++ L+R ELV++RA GIS WQ L P ++ +G + NP++
Sbjct: 67 SVLPFAVLFGSMAALLQLSRKLELVVARAAGISAWQFLQPGAFVALAIGALAIGAYNPLS 126
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ ++ ++ + K + W++ + I A+ + T
Sbjct: 127 AALKQRSSEIEAKIFAKSTKAGTGKDLWLRQRSVDGQAIIRAETAVEGTTTLAGVTVFQF 186
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN----STTLNIPIKMDGFQKF 240
D + +A A +++ +L+ V P ++TL+ P ++ Q+F
Sbjct: 187 DDAGVFTAQIEAARATLHDGWWELRDVRVLTRDEPPESHEVYLVASTLD-PSQIR--QRF 243
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S F+++ + ++ ++ + R Q+ L+ PL+ +AM L+AA+VSL F R
Sbjct: 244 TPP-ESVPFWQLPETIARHERAGL-DATRYRLQYDVLLATPLLYLAMVLVAATVSLRFFR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+V G+ +GF+LY +M+ G SG++ P AA P ++ L L LL +ED
Sbjct: 302 FGGVGKLVLGGVSAGFVLYVARQVMEGLGASGMVAPTVAAWFPAVVGSLLGTLTLLYQED 361
Query: 361 G 361
G
Sbjct: 362 G 362
>gi|163792837|ref|ZP_02186813.1| Predicted permease [alpha proteobacterium BAL199]
gi|159181483|gb|EDP65995.1| Predicted permease [alpha proteobacterium BAL199]
Length = 365
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 101/363 (27%), Positives = 173/363 (47%), Gaps = 20/363 (5%)
Query: 12 YYLKTTLYFLLGA----MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + ++++LG M +VF++DL E+ + +AA ++P + QQI+
Sbjct: 10 YIGRQFVFWVLGTFAAIMAIVFLLDLIELLRRGSGKDGAHFGVLVEMAALKLPNMGQQIL 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA--- 124
PF L +++ F L RT+ELV++RA GIS+WQ L P + ++LLG V V+NPI+
Sbjct: 70 PFAVLFGSMLAFTRLTRTNELVVARAAGISVWQFLMPAIAVALLLGALKVGVVNPISSVM 129
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
T+ + D I + + + W++ + A + + I
Sbjct: 130 TARFNVLEDTILRNRVDSFMTVGQGGLWIRERTESGQHVVHALAARQNDAELANVLVIRF 189
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
++ + R DA A + +L V P + S + IP ++ Q + F
Sbjct: 190 GHNDEFLERIDARTARLGAGYWELHDTVVTSVKGRPDQRGS--IRIPTRLT-IQNIQDSF 246
Query: 245 AS---RSFYEI---IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
AS SF+E+ I+ + + S + H ++ L+ PL+L+AM LIAA+ SL
Sbjct: 247 ASPETMSFWELPGFIRILENAGFSAVKHRL----YWHALLASPLLLIAMVLIAATFSLRL 302
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + G+F+GF+LY + I+ + G S + V AA P +T+ L + LL
Sbjct: 303 TRRGGTLLWASSGLFTGFLLYFMSDIVFALGLSARIPEVLAAWTPATVTMLLGLTSLLHL 362
Query: 359 EDG 361
EDG
Sbjct: 363 EDG 365
>gi|170746989|ref|YP_001753249.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
JCM 2831]
gi|170653511|gb|ACB22566.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
JCM 2831]
Length = 363
Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 165/360 (45%), Gaps = 7/360 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RYF +L+T L + LV+ +D E+ + GE S A L+ R P + +
Sbjct: 8 LGRYFAARFLRTVLGVFVTVFALVYTLDFVELLRRAGEAQGASAGLMAQLSLYRTPAVAE 67
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++PF L ++ L+R ELV++RA GIS WQ L P + ++ LG V V NP++
Sbjct: 68 GVLPFAVLFGSMAALLQLSRKLELVVARAAGISAWQFLQPGLFVALALGALAVGVYNPVS 127
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ ++ + K S W++ + + A+ + + T
Sbjct: 128 AMLKQRSTEIEAKIFAKSTKASSGKDLWIRQKGLDGEAILRAETAVEGTTTLAGVSVFTF 187
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF---QKFS 241
D K + A A++++ +L V P ++ T I +D Q+F+
Sbjct: 188 DAAGKFAEQLVAARAMLHDGYWELSDVRVLTPDAPP--ESFDTYLIASNLDPGQVRQRFT 245
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S F+++ ++ + ++ + R Q+ L P++ VAM ++AA+VSL F R
Sbjct: 246 PP-ESVPFWQLPTTIARTERAGL-DATRYRLQYDVLWARPVLFVAMVIVAATVSLRFFRF 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+V G+ +GF LY + +M+ G SG++ AA P ++ L L LL +EDG
Sbjct: 304 GGVGKLVLGGVAAGFALYVVRQVMEGLGASGLVAAPVAAWFPAVVGSLLGTLTLLYQEDG 363
>gi|162149096|ref|YP_001603557.1| hypothetical protein GDI_3326 [Gluconacetobacter diazotrophicus PAl
5]
gi|209545161|ref|YP_002277390.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787673|emb|CAP57269.1| putative membrane protein [Gluconacetobacter diazotrophicus PAl 5]
gi|209532838|gb|ACI52775.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 369
Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 87/368 (23%), Positives = 167/368 (45%), Gaps = 22/368 (5%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + + + +L LV + D ++ ++ P+ S + +A VP + +I+
Sbjct: 10 YIARQFTLAVMAMILSLTGLVSLFDFIDLLRRVATRPDVPTSLASEIALLHVPYFMIEIL 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF L+ IV F+ L R+SEL+++RA GIS WQ L + ++L+GI ++P+++
Sbjct: 70 PFGVLLGGIVCFWRLTRSSELIVARAAGISAWQFLTGPLSCALLIGILATGALSPLSSIM 129
Query: 128 EKIGIDLIQQW-KDNGDKQKSDIIPWMQISN----PQQDIFIGAKKILPENHIWE--DFT 180
+ L + + G SD W++ ++ P + A+ + + + +
Sbjct: 130 YRQAETLDHVYLRSGGPLNLSDGALWLRQADSGLVPHGVAILHARSVHLQGGVLRIGGIS 189
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS----TTLNIPIKMDG 236
+D + +I R +A + + + R+P+ T L +P
Sbjct: 190 LFRLDDTDHLIVRIEAPEGYLGRKVWIFQDARTIRPDRLPVPAGRFVMPTDLTVP----- 244
Query: 237 FQKFSEQFASR---SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ E FAS S + + ++ +S F + R F L+ +P++ M L+AA
Sbjct: 245 --RVQESFASPDTLSVWALPGFIALLERSG-FSSIRHRLHFQTLLTLPILAGTMALVAAG 301
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S+ +R ++ G+ +GF L+TI + FG+SG + P+ AA P + L++
Sbjct: 302 FSMRPTRRGGVARMIGSGVAAGFALFTISKVAAQFGESGAMPPLLAAWAPTGAGLCLAVS 361
Query: 354 ILLQKEDG 361
+LL EDG
Sbjct: 362 LLLHLEDG 369
>gi|296445732|ref|ZP_06887685.1| permease YjgP/YjgQ family protein [Methylosinus trichosporium OB3b]
gi|296256712|gb|EFH03786.1| permease YjgP/YjgQ family protein [Methylosinus trichosporium OB3b]
Length = 361
Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 165/377 (43%), Gaps = 41/377 (10%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + KT L L+FV+ E+ + G++P A++ RVP +
Sbjct: 6 LSRYLAARFAKTILAIFATMFCLMFVVYFVELLRRAGDIPQAGADTVALMTILRVPATAE 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I+PF L + F +L R ELV++RA G+S+WQ L P ++++G+ +V + NP++
Sbjct: 66 TILPFAVLFGAMTTFVDLTRKLELVVARASGVSVWQFLFPPAFVALVIGVVSVTLYNPVS 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQ--------KSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
+++Q D + + + D W++++ + A
Sbjct: 126 A--------VMKQRSDQMELELFGVQGSVRVDHSKWLRLTGVDGTAILHATDYQAGGARL 177
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI--PIDKNSTTLNIPIKM 234
+ + K+ + R +A A + L V + R+ P +++ T + +
Sbjct: 178 TEVSVNVYSKEGLFLERVEAARARL------LAGVFVLEEARVNAPGEESRTVGSYLLAT 231
Query: 235 DGFQKFSEQFASR----------SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
D EQ + S E+ +K + + + QF L+ PL+L
Sbjct: 232 D---LTPEQLVTATTPPQGAPFWSLLELGEKTADAGLDPTGYIL----QFQTLLARPLLL 284
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
VAM L+AAS SL F R V+ G+ +GF+LY + + G +G++ P+ AA P
Sbjct: 285 VAMVLVAASFSLRFFRMGGIARTVSGGVVAGFVLYIVTKLFSDLGGAGVISPLVAAWSPA 344
Query: 345 ILTISLSILILLQKEDG 361
++ L + LL EDG
Sbjct: 345 LVGSMLGAVSLLYSEDG 361
>gi|83594405|ref|YP_428157.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
gi|83577319|gb|ABC23870.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
Length = 366
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 183/377 (48%), Gaps = 33/377 (8%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMI----LVFVIDLNEIQNQMGELPNYSISRGAVL--AATR 58
++R Y +T L L+GA + L+ + D+ EI + G + +I VL A
Sbjct: 3 IYRTLTTYIARTYLTALVGATLVVGALLMLFDVIEITRRSG---SKAIGIDVVLEMALYH 59
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P+ +Q +PF+ + +++F+ L R+SELV+ RA G+S+WQ L P + ++LGI V
Sbjct: 60 LPMSLQSALPFVFMGGAVMIFWKLARSSELVVIRAAGLSVWQFLAPVIAVVVVLGIANVT 119
Query: 119 VINPIA----TSGEKIGIDLIQQWKDNGDKQK---SDIIPWMQISNPQQDIFIGAKKILP 171
++NP+A T E++ + D+G SD W++ +NP+ + + A+ +
Sbjct: 120 LLNPLAAHLYTKYERMDAGM-----DSGVANPLALSDGGLWLRENNPEGQVVMHAQGVRQ 174
Query: 172 ENHIWEDFTSITI---DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
++ T +TI + R DA+ A + + L VV GR + + + TL
Sbjct: 175 VDNALR-MTGVTIFRYGPDRRFESRIDAETAGLREGALVLTSVVTTYPGR--VGERAETL 231
Query: 229 NIPIKMDGFQKFSEQFA---SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+P + K + F+ + SF+E+ ++F + F + ++ LI PL+L+
Sbjct: 232 EVPSNLT-LPKIQDSFSPPETVSFWELPAFITFFEAAG-FSAHAHRLHWHSLIASPLLLI 289
Query: 286 AMTLIAASVSLEFS-RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
AM L+ A SL+ S RS + + +GF ++ I + G S L AA P
Sbjct: 290 AMVLMGAVFSLKPSQRSVNWLFRIVGAVAAGFGVFFFSKITYTLGLSQTLPVNLAAWSPA 349
Query: 345 ILTISLSILILLQKEDG 361
++T +++ L EDG
Sbjct: 350 LVTTMVALAALFHLEDG 366
>gi|58038774|ref|YP_190738.1| hypothetical protein GOX0299 [Gluconobacter oxydans 621H]
gi|58001188|gb|AAW60082.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
Length = 396
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/372 (26%), Positives = 169/372 (45%), Gaps = 29/372 (7%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + ++ +TL +L LV + D ++ + PN S +AA VP I ++
Sbjct: 36 YIARQFMLSTLSMVLALTGLVSLFDFIDLLRRAATRPNVPASLIVKIAALHVPYYIIYVL 95
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF L+ IV F L R+SEL+++RA GIS WQ L + ++L G+ T I+ ++++
Sbjct: 96 PFGILLGGIVCFSRLTRSSELIVARAAGISAWQFLASPLACALLTGLLTTTGISALSSTM 155
Query: 128 EKIGIDLIQQWKDNGD------------KQKSD-IIPWMQISNPQQDIFI--GAKKILPE 172
+ L Q + G +Q D ++P QD+ + GA K+
Sbjct: 156 FRSAEMLDQTYLRTGGGPLTLNGGALWLRQSDDGLVPHGVAILHAQDVHLIDGALKV--- 212
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
+ +D ++++I R +A + + + L +P TL +
Sbjct: 213 ----SGVSIFRLDDRDRLIVRVEAPQGALGDHQWILHGTSVLHPDHLPQQIGDMTLPSDL 268
Query: 233 KMDGFQKFSEQFASR---SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ Q E FAS S + + +S +S F + R F L+ +P++ M L
Sbjct: 269 TVGRVQ---ESFASPDTLSVFALPGFISLLERSG-FPSIRHRLHFQSLLALPILAGTMAL 324
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
++A S+ +R ++ GI +GF L+TI + + FG+SG L PV AA P +
Sbjct: 325 VSAGFSMRPTRRGGVARMLGSGIAAGFALFTISKVAEQFGESGALPPVLAAWAPTGAGLC 384
Query: 350 LSILILLQKEDG 361
L++ +LL EDG
Sbjct: 385 LAVALLLHMEDG 396
>gi|254418566|ref|ZP_05032290.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
gi|196184743|gb|EDX79719.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
Length = 378
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 156/343 (45%), Gaps = 13/343 (3%)
Query: 27 LVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTS 86
LV +ID E+ +G + S R L A + P +I Q++PF+ L + + LNR S
Sbjct: 41 LVMLIDFVEVSRGVGSDQDLSALRILGLVALKSPSVIVQLLPFVFLFGTLAAYIGLNRRS 100
Query: 87 ELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQK 146
ELV RA G+S W+ + P +++LG+ TV V+ P+A++G+ + +
Sbjct: 101 ELVAMRAAGVSAWRFVLPAAGMALVLGVLTVTVLGPLASAGDGLWQRERARISGTAPGAS 160
Query: 147 SDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT----SITIDKKNKIIHRKDADLAIIY 202
S+ W++ + Q+ + I A + N D T + + R DA A +
Sbjct: 161 SNDAIWLREGDDQRQMIIRAGRQDRANARLLDVTFFIYTTDAEGNRDFSERIDARSAALS 220
Query: 203 NDKVKLKKVVEYQYGRIPID-KNSTTLNIPIKMDGFQKFSEQFASRSFYEI---IKKMSF 258
+ +L V G+ + + L+ + F++F+ S F+ + IK++
Sbjct: 221 AGRWRLTDAVGASIGQRAVTYSSLDLLSSLADEEAFERFARP-QSTPFWSLPNQIKRIED 279
Query: 259 SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFML 318
+ ++ + R F L+V PL+ AM+++AA+ SL R + + GF
Sbjct: 280 AGFASTAYRLR----FQQLLVTPLVFAAMSILAAAFSLRLMRLGDLAKMSVAAVVLGFAF 335
Query: 319 YTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ + + G + ++ P AA +P ILT + +L EDG
Sbjct: 336 FFLNQFSSAMGSAEVVPPFVAAWLPPILTALAAFTLLFYTEDG 378
>gi|209964865|ref|YP_002297780.1| predicted permease YjgP [Rhodospirillum centenum SW]
gi|209958331|gb|ACI98967.1| predicted permease YjgP [Rhodospirillum centenum SW]
Length = 364
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 175/357 (49%), Gaps = 22/357 (6%)
Query: 18 LYFL--LGAMI-LVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVV 74
L+FL LG M+ +V+++D E+ + P+ + + ++P I Q+I+PF+ L
Sbjct: 17 LWFLAILGGMLAIVYLLDTVELLRRAANKPDAAFQIVLTMGLLKLPEIGQEIVPFVVLFG 76
Query: 75 NIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG----EKI 130
+ F+ L RT ELV+ RA GIS+WQ + P + + L+G+ V V+NPI ++ E++
Sbjct: 77 GMYTFWRLTRTQELVVVRASGISVWQFMAPVLTATFLIGMTLVGVLNPIFSAMLGRYEQL 136
Query: 131 GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
++ K + D +S I W++ Q I A I+P + + ++
Sbjct: 137 ENRYLRGMKSSLDVAESGI--WLRQVGEPQAYLIHADAIVPGTLELRQVMVLLNESDGQV 194
Query: 191 IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR--- 247
R DA A + + +L+ + GR + + +P ++ QK E FAS
Sbjct: 195 SGRFDAASATLRDGFWELRDAWFNRPGR--VGEFLPAYRLPTELTE-QKIQEAFASPDTL 251
Query: 248 SFYEI---IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
SF+E+ I + + S++ H ++ L+ P++L AM L+AA+ ++ R
Sbjct: 252 SFWELPGFIATLEATGLSSVRHRL----HWHSLLAQPVLLCAMILLAAAFAMRQVRRGGA 307
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++A GI + +L+ + I+ + G SG + + AA P +++ L LL EDG
Sbjct: 308 LTLIALGIAAALLLFVMQDIVLALGMSGTIPVLLAAWAPAGVSVMLGAAALLHLEDG 364
>gi|154253776|ref|YP_001414600.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
DS-1]
gi|154157726|gb|ABS64943.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
DS-1]
Length = 363
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 94/365 (25%), Positives = 166/365 (45%), Gaps = 16/365 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + +L L ++L+F+I+L E+ + + P+ + +A VP I
Sbjct: 7 LSRYLGRQFLGVVLLTFGVFIVLIFMIELVELLRRSADKPDVTFGLVVTIALMEVPRIGA 66
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +PF L + F L+R +ELV++RA G+S+WQ + P + + ++G F V NP++
Sbjct: 67 QTLPFAVLFGGMAAFLRLSRNNELVVARAAGVSVWQFIAPALAVAFVIGAFVTTVFNPVS 126
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIP-----WMQISNPQQDIFIGAKKILPENHIWEDF 179
+ L ++ +Q S + W++ ++ + A + + +
Sbjct: 127 ATLTTRAEQLESKYL---SRQASFVAVSANGLWLRQADSTGQSVVHALR-MDDGFRLRRV 182
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T D+ N+ R DA A + +L V G ++ + ++
Sbjct: 183 TIFLYDQGNRFSGRIDAATARLRPGYWELADVWVMMDGEQSRKYDTYRQETSLTQ---KQ 239
Query: 240 FSEQFA---SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E FA S SF+E+ ++ + + F R + F+ L+ P +L M LIAA+ SL
Sbjct: 240 IEESFAREESISFWELPHFIATAEAAG-FSARRYQIYFHQLLATPALLCTMVLIAAAFSL 298
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+R +V GIFSGF++Y + + + G SGIL AA P ++ L + +L
Sbjct: 299 RVTRMGGLLQMVLGGIFSGFLIYFLGNLAIALGLSGILPAALAAWAPSLVATLLGLAVLF 358
Query: 357 QKEDG 361
EDG
Sbjct: 359 HLEDG 363
>gi|260427738|ref|ZP_05781717.1| permease, YjgP/YjgQ family [Citreicella sp. SE45]
gi|260422230|gb|EEX15481.1| permease, YjgP/YjgQ family [Citreicella sp. SE45]
Length = 364
Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 168/368 (45%), Gaps = 15/368 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + + + L I V ++DL E + G + S ++ + A R+P +
Sbjct: 2 ILHRYFARRFFWMFMSILSVFAIFVGLVDLVEQIRKFGG--DISFAQKVQITALRLPEGM 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS-IWQLLNPFVVGSILLGIFTVLVINP 122
+I+P + ++ +F L R+SELV+ RA G S + L+ P +V + G+ TV ++NP
Sbjct: 60 YEILPLVMILATAALFLMLARSSELVVVRAAGRSGLTALMGPMMVALAISGV-TVAMLNP 118
Query: 123 IATSGEKIGIDLIQQWKDNGDK----QKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ + K DL + ++++G K + W++ + I A + P+ + D
Sbjct: 119 LVAATSKRASDLAESYENDGASVISIGKEGL--WLRQGSSDGQAVIRAARANPDATVLYD 176
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI--PIDKNSTTLNIPIKMDG 236
+ + + I R +A A + + L+ + G P + I D
Sbjct: 177 VSFLQYAEDGGPIRRVEAAEAALEDGAWALRDAKVWPLGTRANPEAAAERHDRLRIASDL 236
Query: 237 FQK-FSEQFASRSFYEIIKKMSFSN--KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
Q ++F S I F N + F R E F + P+ LVAM L+AA
Sbjct: 237 TQNDIRDRFGKPSAVAIWDLPDFINGLEQAGFSARRHEVWFQMELARPIFLVAMVLVAAG 296
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ +R + + V + GF LY + + G++G L P+ AA +P + ++ L++
Sbjct: 297 FTMRPARLGRTGLYVLAAVLLGFGLYYVRNFAQIMGENGQLPPLFAAWVPPVASLMLALG 356
Query: 354 ILLQKEDG 361
++LQ EDG
Sbjct: 357 LVLQMEDG 364
>gi|304392006|ref|ZP_07373948.1| permease [Ahrensia sp. R2A130]
gi|303296235|gb|EFL90593.1| permease [Ahrensia sp. R2A130]
Length = 372
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 170/367 (46%), Gaps = 16/367 (4%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y K +L+ T++ L L+ ++D+ E+ + + + + R P++ + I+
Sbjct: 9 YLAKNFLRNTMFVFLVFFFLIALVDMLELSRRTARIDDVGFFDVVSIVMLRAPVLSENIV 68
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA--T 125
PF L LN+ ELV++RA G+S+WQ L P + ++G+ L+ NP++
Sbjct: 69 PFAVLFGASASLLLLNKRLELVVARASGVSVWQFLAPICAAAAVVGLVMGLIYNPLSLRL 128
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ ++ + K+ G + W +I+ P D+ + A + D
Sbjct: 129 QASSLSLEGVVFAKNTGVTSDTTWNFWTRIARPDGDMVLRAAVAAERGKKLSGVSLYLFD 188
Query: 186 KKNKIIHRKDADL-----AIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDG 236
K K R DA A+ D + + V+E G P + + I +
Sbjct: 189 KDGKPEQRIDAASANFAEAVPGTDSLPNRYVLERANILTVGEKPKVVPVMVVPVSITAEL 248
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ SF+++ + + ++ +T+++ ++ +PL+ VAM L+A +VSL
Sbjct: 249 LEIRQTSAERVSFWDLDDQAELAERAG-RPPEPFQTRWHSVLALPLLFVAMVLLAGTVSL 307
Query: 297 EFSRS--NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
F+R N RI+ G+ +GF+LY + ++ +FG +G++ PV AA P + ++I +
Sbjct: 308 TFARFGINGKRILT--GVVAGFVLYVLTKLVVTFGSNGLVSPVIAAWSPATVGSLIAITV 365
Query: 355 LLQKEDG 361
LL +EDG
Sbjct: 366 LLHQEDG 372
>gi|310816138|ref|YP_003964102.1| putative permease [Ketogulonicigenium vulgare Y25]
gi|308754873|gb|ADO42802.1| putative permease [Ketogulonicigenium vulgare Y25]
Length = 360
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 174/374 (46%), Gaps = 31/374 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF Y K L G +++ +I+L E + G ++ L VP +
Sbjct: 2 ILHRYFALRYFKAFLGTAAGFFLMLVMIELIEQLRRFGGQSDFP-----ALTLLNVPATL 56
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS-IWQLLNPFVVGSILLGIFTVLVINP 122
Q++P I ++ +V+F L R+SE+V++RA G S + L+ P ++ +L+G+ V+ NP
Sbjct: 57 YQVLPLIVIISALVLFLGLARSSEMVVTRAAGRSALIALIAPVLI-VMLMGLLAVMAFNP 115
Query: 123 IATSGEKIGIDLIQQWKDNGD--KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I S + + I + + D I W++ + I A P+ T
Sbjct: 116 IVASTSREYDNRIATITGSSRILQIGGDAI-WLRQGDEDGQSVIRAAASDPDGTTLRGVT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLK--KVVEYQYGRIPIDKNST---TLNIPIKM- 234
++ R DA A + D +++ KV G+ P + ++T TL +P +
Sbjct: 175 MLSYTNDGIPARRIDAAAATLSGDHWQMQNAKVWPLNTGQNP-EASATIHATLAVPSNLS 233
Query: 235 -DGFQKFSEQFASRSFYEI---IKKM---SFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
D + AS S +E+ IK+M F+ + I H ++E + +P LVAM
Sbjct: 234 PDEIRNSFGNPASISVWELPAFIKRMEDAGFTAQRQIVH-LQSE------LALPAFLVAM 286
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
LIAA +L R + ++V + + F LY I + + G++G L P+ AA + +
Sbjct: 287 MLIAAVFTLRHQRGGRTGMMVLFAVLISFSLYFIRNLAQILGENGQLTPLLAAWVTPLAA 346
Query: 348 ISLSILILLQKEDG 361
I+L + +LL EDG
Sbjct: 347 IALGVGLLLHLEDG 360
>gi|148261610|ref|YP_001235737.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
gi|326405100|ref|YP_004285182.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
gi|146403291|gb|ABQ31818.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
gi|325051962|dbj|BAJ82300.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
Length = 376
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 145/354 (40%), Gaps = 40/354 (11%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + +L + G + + D ++ Q + P + R L RVP + QI+
Sbjct: 16 YIGRRFLGAVVAMQAGLTAIGALFDFLDLLRQSADKPQATFWRMLALEVLRVPWLGMQIL 75
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT-- 125
PF L+ I F+ L R+SELV++RA G S+WQ L V G+ L+G+ +PI+
Sbjct: 76 PFAVLLGGIFAFWRLTRSSELVVARATGTSVWQFLAVPVAGAALIGVLATTAGSPISAIM 135
Query: 126 -------SGEKIGID-----------LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK 167
+G+D ++Q D G K I+ D
Sbjct: 136 FARAEVLYSTYLGVDSGPLSLQGGQLWLRQADDAGGKGGIAIL--------HADAVHLHG 187
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT 227
K+L HI T + + + + R +A + +L+ P + +
Sbjct: 188 KVLTTGHI----TVLRLTAQTTLQERIEAARGQLEPGGWRLESARILTPDGEP--RAVSA 241
Query: 228 LNIPIKMDGFQKFSEQFASR---SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
L IP + + E FAS SF+ + + +S F + E F L+ +PL+
Sbjct: 242 LRIPTTLT-VGRVQESFASPSALSFWALPGFIRLLRRSG-FSATQHELAFQSLLALPLLC 299
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
M L+AA S+ SR ++ G+ GF+L+ + + GKSG LPV
Sbjct: 300 ATMVLVAAGFSMRPSRRGGAIQMIGAGVGCGFLLFMLSEVAAQLGKSGA-LPVG 352
>gi|302383688|ref|YP_003819511.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
15264]
gi|302194316|gb|ADL01888.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
15264]
Length = 381
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 162/351 (46%), Gaps = 30/351 (8%)
Query: 27 LVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTS 86
LV +ID EI +G + S R L + P +I Q++PF+ L + F LNR S
Sbjct: 45 LVMLIDFVEISRGLGSDTDLSGVRILGLMLIKSPAVIVQLLPFVFLFGTLAAFVGLNRRS 104
Query: 87 ELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN----- 141
EL+ RA G+S W+ + P ++ G+ TV VI P+A SG+ + Q+ +
Sbjct: 105 ELIAMRAAGVSAWRFVLPAAGAALAAGVLTVTVIGPLAASGD----GMFQRERGRISGAV 160
Query: 142 GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT----SITIDKKNKIIHRKDAD 197
G ++ I W++ Q+ + + A + N D T + + + R DA
Sbjct: 161 GGGEQEAI--WLREGEGQRQMVVRAARQDRANARLLDVTFFIYATDPEGRRAFTERIDAA 218
Query: 198 LAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA---SRSFYEI-- 252
A + + +L V Q G+ +TL++P + + F E+FA S F+ +
Sbjct: 219 SASLSAGRWRLVDAVGAQTGQRA--TRYSTLDLPSSLADDEAF-ERFARPQSTPFWSLPG 275
Query: 253 -IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR-SNQPRIIVAY 310
I+++ + S+ + R + L+ PL AMT++AA+ SL R + R+ VA
Sbjct: 276 QIQRIEAAGFSSTAYRLRLQQ----LLSTPLAFAAMTILAAAFSLRLMRLGDLARMAVA- 330
Query: 311 GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ GF + + + G + ++ P AA +P +LT + +L EDG
Sbjct: 331 AVVLGFAFFFLNQFSAAMGSAEVVPPFIAAWLPAVLTALAAFTLLFYTEDG 381
>gi|254294287|ref|YP_003060310.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
gi|254042818|gb|ACT59613.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
Length = 368
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 156/328 (47%), Gaps = 21/328 (6%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
TL +LGA++LV D+ E +G S+ L A + P +I + +PF LV ++
Sbjct: 21 TLGIILGAILLV---DMVEQLRTVGARTELSLLGAFQLTALKAPQLILETMPFAILVGSM 77
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT-------SGEK 129
+ + LNR+SEL RA G+S W+ L P + LG + +I+P+AT + +
Sbjct: 78 LAYSKLNRSSELSAIRASGVSAWRFLAPTFFLAAFLGCIAMTIIDPLATFSNAKYETEKT 137
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWM-QISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ +D KD+ +QK W+ Q ++ Q + G ++LP ++ I I +K+
Sbjct: 138 LLLDDTGAVKDSAKRQKK---VWLRQGTDTTQSVIHG--EVLPNDNSSLQNVEIFILEKD 192
Query: 189 ----KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ R DA A + +L+ V EY PI ++ L +
Sbjct: 193 GDEFEFQRRIDAKKATLRPGFWQLEGVTEYSSDNEPIKQDYLALTTTLDPSTILDRGTDE 252
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S SF+++ + + + ++ + + + + + L+ +P++L AM LI A V L RS
Sbjct: 253 KSISFWKLPQLIQDARRAGLDAD-KYILKLHTLLAMPVLLGAMALIGAVVCLRLRRSGGV 311
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSG 332
++A GI +GF+L+ + + K SG
Sbjct: 312 TQLLAAGIGAGFLLFFVNQVSKGLASSG 339
>gi|163746449|ref|ZP_02153807.1| permease YjgP/YjgQ family, putative [Oceanibulbus indolifex HEL-45]
gi|161380334|gb|EDQ04745.1| permease YjgP/YjgQ family, putative [Oceanibulbus indolifex HEL-45]
Length = 365
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 169/374 (45%), Gaps = 26/374 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--RVPL 61
IL YF + + + F++ +L ++ L + +Q + + VL T +P
Sbjct: 2 ILHFYFARRFFTS---FMVITAVLAALVMLVDGVDQARRFADDDVGWDQVLGMTLLNMPQ 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I I+P I ++ + +F L R+SE+V++RA G S + L VV ++++G V V+N
Sbjct: 59 TINMILPLIMILATVALFIGLARSSEMVVTRAAGRSALRALVAPVVVALIIGTLAVAVLN 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
PI + + L Q+++ NG SD W++ + I A + + + +
Sbjct: 119 PIVAATSERSEQLTQKYRSNGSSALSVSDEGLWLRQGTEEGQSVIRAWRTNSDASVLYNV 178
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKV----VEYQYGRIPIDKNSTTLNIP--IK 233
T I+ D + I R +A+ A + +L +E + TL IP +
Sbjct: 179 TIISYDAEKGPIRRIEAESAQLSGGDWQLTGAKIWPLEAGVNAEGAAEEHETLTIPSSLT 238
Query: 234 MDGFQKFSEQFASRSFYEI------IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
++ ++ + A+ S YE+ +++ FS + + E + P LVAM
Sbjct: 239 VERIRESIARVAAVSIYELPEFIRQLEQAGFSTRQH-------EVWLQAELARPFFLVAM 291
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
L+A++ ++ +R + V I GF LY I + + G++G + AA P +
Sbjct: 292 VLVASAFTMRHTRFGGTGVAVLASILLGFGLYFIRSFAQILGENGQIPVTLAAWAPPVAA 351
Query: 348 ISLSILILLQKEDG 361
I L++ +LL EDG
Sbjct: 352 IFLALGLLLHAEDG 365
>gi|16125935|ref|NP_420499.1| hypothetical protein CC_1690 [Caulobacter crescentus CB15]
gi|221234698|ref|YP_002517134.1| hypothetical protein CCNA_01761 [Caulobacter crescentus NA1000]
gi|13423101|gb|AAK23667.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220963870|gb|ACL95226.1| hypothetical membrane spanning protein [Caulobacter crescentus
NA1000]
Length = 368
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 166/367 (45%), Gaps = 24/367 (6%)
Query: 11 KYYLKTTLYFLLGAMI----LVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+Y LK T+ L+GA+ +V +I +I +G + S R L + P I +
Sbjct: 10 RYVLKRTMGALVGALAVLSAMVMLIAFVDIARNVGTRADASFLRLLYLTILQAPATILVL 69
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
PFI L + F LNR SEL+ RA GIS W+ + P S ++G+ T+ ++NP+ T+
Sbjct: 70 APFIFLFGTMWAFVELNRRSELIAMRAAGISAWRFIMPAAASSFVIGLLTITLLNPL-TT 128
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK-KILPENHIWEDFTSI--- 182
+ + NG +++ W++ + + I I A+ + L + + S+
Sbjct: 129 AMTAKFETERDRTMNGYLKEAPKGTWLRQGDDKTQIVIRARARELVDGSVRLRGVSLFVY 188
Query: 183 TIDKKN--KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
T++ K R +A+ A + +L V E G I +S L+IP +D +
Sbjct: 189 TLNAKGVMDFTRRIEANEARLEPGFWRLSGVREATPGAGAIRSDS--LSIPSNLDD-RTA 245
Query: 241 SEQFASRSFYEI------IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
SE+F + + I++ + + S + R + + PL+ AM+++AA+
Sbjct: 246 SERFNTPQAVALWRLPATIQRTADAGFSAVPFKLRLQQD----LATPLLFAAMSVLAAAF 301
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
SL R ++ G+ GF + + + G++ +L P AA P + + + +
Sbjct: 302 SLRLMRLGGLAMLAGSGVALGFGFFFFNELCSTLGRADVLAPFVAAWTPPTVALLVGFTL 361
Query: 355 LLQKEDG 361
L EDG
Sbjct: 362 LCYTEDG 368
>gi|126736392|ref|ZP_01752134.1| putative permease [Roseobacter sp. CCS2]
gi|126714213|gb|EBA11082.1| putative permease [Roseobacter sp. CCS2]
Length = 364
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/372 (24%), Positives = 166/372 (44%), Gaps = 23/372 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF +L++ L + +++ +DL + + G + + +L+ +P
Sbjct: 2 ILHRYFASRFLRSFLGVGMVFFLIMLFVDLVDQLRRFGS-KDATFVDLLMLSLLNIPQAF 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS-IWQLLNPFVVGSILLGIFTVLVINP 122
I+P I ++ I +F +L+R+SE+V++RA G S + LL P V ++L+GIF V V+NP
Sbjct: 61 YAILPLIMILATIALFLSLSRSSEMVVTRAAGRSALHSLLAPLTV-ALLVGIFAVGVMNP 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSD--IIP------WMQISNPQQDIFIGAKKILPENH 174
I K +++ D + D ++ W++ N I A+ +
Sbjct: 120 IVAGTSK-------EFEARSDALRGDSSVLSFGSSGLWLRQGNATGQTVIRAQSANLDGT 172
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ D T +T I R A A + L+ +Q + + S L+ +
Sbjct: 173 LLTDVTFLTFAPDGNPITRISAASAELTTGAWVLRDAKSWQLAGVTTPEASAQLDAERTV 232
Query: 235 DGF---QKFSEQFASRSFYEIIKKMSFSNK--SNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ + F + S I + +F ++ + F R F+ + +P+ LV+M L
Sbjct: 233 QSTLTPDQIRDSFGTPSSIPIWELPAFIDRLQTAGFSAQRHLVWFHTELALPIFLVSMVL 292
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
I AS +L R + ++V + + F+ Y I + G++G L + AA P I
Sbjct: 293 IGASFTLRHQRGGRTGMMVMFAVLLAFVTYFIRNFAQVLGENGQLPVLLAAWAPPFAAIG 352
Query: 350 LSILILLQKEDG 361
+S+ LL EDG
Sbjct: 353 ISMGFLLHHEDG 364
>gi|83313005|ref|YP_423269.1| permease [Magnetospirillum magneticum AMB-1]
gi|82947846|dbj|BAE52710.1| Predicted permease [Magnetospirillum magneticum AMB-1]
Length = 367
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 162/343 (47%), Gaps = 22/343 (6%)
Query: 32 DLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVIS 91
D+ E+ + P I+ ++A ++P ++ I+PF ++ ++V F+ L RT ELV++
Sbjct: 34 DVIELIRRAAGRPELGITPILLMAFFKLPQMLHTILPFAVMIGSMVCFWRLTRTHELVVA 93
Query: 92 RAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG----EKIGIDLIQQWKDNGDKQKS 147
RA GIS+WQ + P + + + GIF + NP+A + E++ +L+ D S
Sbjct: 94 RAAGISVWQFITPVLAVAGIFGIFEITTFNPMAAAMYGRYERLQDELLATKASAFD--IS 151
Query: 148 DIIPWMQISNPQQDIFIGAKKILPEN---HIWEDFTSITIDKKNKIIHRKDADLAIIYND 204
++ W++ + ++ + ++ + + HI D D+ + R A+ A + +
Sbjct: 152 EVGLWLREPHENGEMVVHSETVRQDGLVLHI-RDAHFFLYDRPDHFHQRISAESATLVDG 210
Query: 205 KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR---SFYEIIKKMSFSNK 261
++++ + G+ + K ++IP ++ + + FAS SF+++ + F +
Sbjct: 211 AFEVRRAWVMEGGKPSVFKEQ--MHIPTQLT-LDRIHDNFASPETLSFWQLPGFIRFFER 267
Query: 262 SNIFHNYRAETQFYF--LIVIPLMLVAMTLIAASVSLE-FSRSNQPRIIVAYGIFSGFML 318
+ N + + Y L+ P++ M L+AA SL +RS + G+ +GF +
Sbjct: 268 AGFTAN---KHRLYLQSLLASPVLYCGMVLMAAVFSLRPNTRSGGLLARIGAGVAAGFAV 324
Query: 319 YTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Y ++ + G S L AA P + + + L EDG
Sbjct: 325 YFFSKVIYALGLSATLPQTLAAWTPPLFAGLIGLSGLFHLEDG 367
>gi|83945295|ref|ZP_00957644.1| hypothetical protein OA2633_00970 [Oceanicaulis alexandrii
HTCC2633]
gi|83851465|gb|EAP89321.1| hypothetical protein OA2633_00970 [Oceanicaulis alexandrii
HTCC2633]
Length = 367
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 93/375 (24%), Positives = 166/375 (44%), Gaps = 22/375 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILV----FVIDLNEIQNQMGELPNYSISRGAVLAA 56
M G LWRY F TL L+GA +++ +ID E +G S + L+
Sbjct: 1 MIGRLWRYLFI----QTLIGLIGAAVIITAVILLIDFVETSRDIGTRVGISAFQALHLSL 56
Query: 57 TRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
+ PL++Q +PFI L + FF LNR SEL++ RA G S W++L P + + L G +
Sbjct: 57 LKAPLLVQDTLPFIVLFGVLFTFFRLNRRSELIVMRASGYSAWRILAPVAILAALTGAIS 116
Query: 117 VLVINPIATSG----EKIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP 171
L +NP+ + E L + + + +G Q I W++ + I I A++
Sbjct: 117 TLALNPLGAASNARFEATREALFEGEGQSSGANQSGPI--WLRETTATGYIMITAQQQGG 174
Query: 172 ENHIWED--FTSITIDKKNKII--HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT 227
++ + F + + + R A+ A + L +EY G +
Sbjct: 175 DDATLTEPVFRQYVLSESGAPLLDRRITAERAELNGGFWSLTNAIEYAPGGQATELGDVA 234
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
L + + + + SF+++ ++ + + + + E +++ L+ PLMLVA
Sbjct: 235 LPTNVGRQALFERARSPGAVSFWQLPAVIASARDAGL-SSLAYELRWHGLLAQPLMLVAA 293
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA-LIPVIL 346
L+ + +L R A G +GF+LY +M G SG + P+ AA P +
Sbjct: 294 ALMGIAATLRLHRLGGAAGFAAAGATAGFILYFSQELMLGLGASGAITPLTAAWTTPALF 353
Query: 347 TISLSILILLQKEDG 361
+++ + + EDG
Sbjct: 354 SLA-GLFFIAATEDG 367
>gi|329850878|ref|ZP_08265723.1| hypothetical protein ABI_37970 [Asticcacaulis biprosthecum C19]
gi|328841193|gb|EGF90764.1| hypothetical protein ABI_37970 [Asticcacaulis biprosthecum C19]
Length = 380
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 90/363 (24%), Positives = 162/363 (44%), Gaps = 19/363 (5%)
Query: 12 YYLKTTLYFLLGAMI----LVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y L+T + A++ L+ +I+ EI + + V+ R P I ++
Sbjct: 24 YILQTCVAMFASALMVVSALILLINYVEISRSVAARADLGGLEVLVMLFQRSPSAILILL 83
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF L ++ F NLNR SEL+ RA G+S W+ + P V + GI T+ V+NP+A+
Sbjct: 84 PFAFLFGSLFAFVNLNRRSELIAMRAAGVSAWRFVLPATVSAFAFGILTIGVLNPVASHL 143
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE-NHIWE-DFTSITID 185
+ + + + ++ I Q + +Q + + + H+ F T D
Sbjct: 144 QDVYERKVVAAEAFAPTDPAEAIYLRQGDSDRQVVIRADGQASAQIGHLRGVTFWIFTTD 203
Query: 186 KKN--KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQKF 240
++ I R DA AI+ +LK EY +DK + L + +D + F
Sbjct: 204 RRGAPSFIERVDAREAILRPGSWQLKDAREYT-----LDKPAQFYNVLTLSSNLDPQKAF 258
Query: 241 SEQFASRS--FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+++S F+ + + N+ + F E + + L+ PLM AMT + A SL
Sbjct: 259 KRYASTQSVPFWR-LPGLIRQNQISGFSTTSYELKLHQLLSTPLMFAAMTALGAVFSLRL 317
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R I+V G+ GF+++ + + S GK+ ++ A P +L + ++ +L+
Sbjct: 318 MRLGGLTILVTSGVSLGFVIFFVNQLFASMGKADVIPAALAGWSPAVLAMLGAMTLLVYT 377
Query: 359 EDG 361
EDG
Sbjct: 378 EDG 380
>gi|163735796|ref|ZP_02143225.1| permease YjgP/YjgQ family, putative [Roseobacter litoralis Och 149]
gi|161390882|gb|EDQ15222.1| permease YjgP/YjgQ family, putative [Roseobacter litoralis Och 149]
Length = 365
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/365 (26%), Positives = 164/365 (44%), Gaps = 20/365 (5%)
Query: 12 YYLKTTLYFLLGAMILVF-VIDLNEIQNQMGELPNYSISRGAV--LAATRVPLIIQQIIP 68
Y+ + +L+ A I +F +I L ++ +Q + +S + L P I QI+P
Sbjct: 6 YFARRFASWLMIAFIALFALIALVDLVDQTRRFADRGVSAAGIFELVILNTPQTISQILP 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
I L+ + F +L R+SEL+ +RA G S L V I+LG +NPI +
Sbjct: 66 LIVLLATVAFFLSLARSSELIATRASGRSAMGALIAPVGVVIVLGTLATTTLNPIVAATS 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIP--WMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
K +L Q ++ G S W++ + I A + P+ + D T + +
Sbjct: 126 KKYNELSQTYRTGGGSTFSISTEGLWLRQGTDDGQMVIRAWRSNPDASVLFDVTFLAYEV 185
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-IPIDKNST---TLNIPIKMDGFQKFSE 242
+ R AD A + + L+ V ++ R I + N+T +L IP + ++ E
Sbjct: 186 IGTPVRRIHADSAELKDGAWLLRNVKDWPLARGINSEGNATEHRSLTIPSSLT-VERIRE 244
Query: 243 QFASRSFYEI------IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F S I IK+++ + S++ H +++ + PL LVAM LIA++ ++
Sbjct: 245 SFGHPSTISIWEMNDFIKQLNQAGFSSLQHRVWLQSE----LARPLFLVAMVLIASAFTM 300
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+R + V + GF LY + + G++G L AA P I ++ L+ LL
Sbjct: 301 RHTRFGGTGVAVLAAVLLGFALYFVRSFGLILGENGQLPVYLAAWAPPIASVLLAFGPLL 360
Query: 357 QKEDG 361
EDG
Sbjct: 361 HAEDG 365
>gi|23013662|ref|ZP_00053531.1| COG0795: Predicted permeases [Magnetospirillum magnetotacticum
MS-1]
Length = 312
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 147/317 (46%), Gaps = 22/317 (6%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P ++ I+PF ++ +V F+ L RT ELV++RA GIS WQ + P + + + GIF +
Sbjct: 5 KLPQMLHTILPFAVMIGAMVCFWRLTRTHELVVARAAGISAWQFITPVLAVAGMFGIFEI 64
Query: 118 LVINPIATSG----EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
NP+A + E++ +L+ D S++ W++ + ++ + ++ + E
Sbjct: 65 TTFNPMAAAMYSRYERLQDELLAAKSSAFD--ISEVGLWLREPHDDGEMVVHSETVRQEG 122
Query: 174 ---HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI 230
HI D D+ + R A+ A + + ++++ + G+ + K +
Sbjct: 123 LVLHI-RDAHFFLYDRPDHFYQRIAAETASLEDGAFEVRRAWVMEGGKPSVFKEKMRIPT 181
Query: 231 PIKMDGFQKFSEQFASR---SFYEIIKKMSFSNKSNIFHNYRAETQFYF--LIVIPLMLV 285
+ +D + + FAS SF+++ + F ++ N + + Y L+ P++
Sbjct: 182 QLTLD---RIHDNFASPETLSFWQLPGFIRFFERAGFTAN---KHRLYLQSLLASPVLYC 235
Query: 286 AMTLIAASVSLE-FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
M L+AA SL +RS + G+ +GF +Y ++ + G S L AA P
Sbjct: 236 GMVLMAAVFSLRPNTRSGGLLARIGGGVAAGFAVYFFSKVIYALGLSATLPQTLAAWTPP 295
Query: 345 ILTISLSILILLQKEDG 361
+ + + L EDG
Sbjct: 296 LFAGLIGLSGLFHLEDG 312
>gi|86138692|ref|ZP_01057265.1| permease, YjgP/YjgQ family protein [Roseobacter sp. MED193]
gi|85824752|gb|EAQ44954.1| permease, YjgP/YjgQ family protein [Roseobacter sp. MED193]
Length = 367
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 160/351 (45%), Gaps = 20/351 (5%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--RVPLIIQQIIPFITLVVNIVVFFNL 82
M LV +IDLNE Q+ + +S ++ T P + + +P I ++ IV+F L
Sbjct: 23 MTLVMLIDLNE---QIRRFDEFDVSASEIVGLTLLNAPAALSEFLPLIMILTTIVLFVGL 79
Query: 83 NRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNG 142
R+SELV++RAIG S + L V+ + LLGI V +NPI + + L ++ G
Sbjct: 80 ARSSELVVTRAIGRSGIRALAAPVLVAGLLGILAVSTLNPIVAATTNLSKTLADTYRTGG 139
Query: 143 DKQK--SDIIPWMQISNPQQDIFIGAKKI--LPENHIWEDFTSITIDKKNKIIHRKDADL 198
S W++ +P I A +N + D T + + I + A+
Sbjct: 140 PSALSFSGEGLWLRQGSPSGQSVIHASSYGGGSDNIVLYDVTILAYAPQGGPIRQIIAES 199
Query: 199 AIIYNDKVKLKKVVEYQY--GRIPIDKNST--TLNIPIKMDGFQKFSEQFASR---SFYE 251
A + ++ L K + G P +T TL +P + + ++ S S Y+
Sbjct: 200 ARLDGEEWLLHKAKAWHMTAGLNPERSAATHETLRLPTTLTQ-DRIRDRLGSADGISVYD 258
Query: 252 IIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYG 311
+ + ++ F R + + + PL L+AM L+ A+ ++ +R + V
Sbjct: 259 LPTTIRDLAQAG-FSTKRYQVWYQVELARPLFLIAMVLVGAAFTMRHTRFGGTGLAVLTA 317
Query: 312 IFSGFMLYTIITIMKSFGKSGILLPVA-AALIPVILTISLSILILLQKEDG 361
+ GF LY + + G++G +PVA AA P + +I L++ +LL EDG
Sbjct: 318 VLLGFGLYFVRNFAQILGENG-QIPVALAAWAPPVASILLTMGLLLHAEDG 367
>gi|295689677|ref|YP_003593370.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
gi|295431580|gb|ADG10752.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
Length = 367
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 162/367 (44%), Gaps = 24/367 (6%)
Query: 11 KYYLKTTLYFLLGAMI----LVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+Y LK ++ L+GA+ +V +I +I +G + + + L + P I +
Sbjct: 9 RYVLKRSMSALVGALAVLGAMVMLIAFVDIARNVGTRADVNFFQLLYLTVLQAPATILVL 68
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
PF+ L + F LNR SEL+ RA G+S W+ + P S ++G+ T+ ++NP+ T+
Sbjct: 69 APFVFLFGTMWAFVELNRRSELIAMRAAGVSAWRFIMPAATASFVIGLLTITLLNPL-TT 127
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK-KILPENHIWEDFTSI--- 182
+ + NG + W++ + + I I A+ + + + + S+
Sbjct: 128 AMTARFETERDHMMNGYLNNAPRGTWLRQGDDKTQIVIRARGRDMIDGSVRLRGVSLFVY 187
Query: 183 TIDKKN--KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
T++KK R +A+ A + +L V E G I +S L+IP +D +
Sbjct: 188 TLNKKGVMDFTRRIEANEARLEPGFWRLTGVREATPGAGAIRSDS--LSIPSNLDD-RTA 244
Query: 241 SEQFASRSFYEI------IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
SE+F + + IK+ + S R + + PL+ AM+++AA+
Sbjct: 245 SERFNTPQAVALWRLPATIKRAEDAGFSAAPFKLRLQQD----LATPLLFSAMSVLAAAF 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
SL R + G+ GF + + + GK+ +L P AA P I+ I +
Sbjct: 301 SLRLMRLGGLAALAGSGVALGFGFFFFNELCSTLGKADVLAPSIAAWTPPIVAILAGFTL 360
Query: 355 LLQKEDG 361
L EDG
Sbjct: 361 LCYTEDG 367
>gi|114766152|ref|ZP_01445156.1| permease, YjgP/YjgQ family protein [Pelagibaca bermudensis
HTCC2601]
gi|114541612|gb|EAU44654.1| permease, YjgP/YjgQ family protein [Roseovarius sp. HTCC2601]
Length = 364
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 151/315 (47%), Gaps = 17/315 (5%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS-IWQLLNPFVVGSILLGIFTV 117
+P + +I+P + ++ +F + R+SELV+ RA G S + L P V ++ G+ +V
Sbjct: 55 LPSGLYEILPLVMILATAALFLMMARSSELVVVRAAGRSGLTALAGPVAVALVISGV-SV 113
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKS--DIIPWMQISNPQQDIFIGAKKILPENHI 175
++NPI + + DL + +K NG S W++ + D I A + P+ +
Sbjct: 114 AILNPIVAATSRQSSDLTESYKSNGASTISIGREGLWLRQGGDEGDTVIRAARANPDATV 173
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLK--KVVEYQYGRIP--IDKNSTTLNIP 231
+ + + + ++ + R +A+ A + + L+ K Q GR P + + L +P
Sbjct: 174 LYEVSFVEYEAESGPLRRIEAEEAALQDGAWVLRDAKAWPLQSGRSPEGMSERFERLELP 233
Query: 232 --IKMDGFQKFSEQFASRSFY---EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+ DG + + +S + + E I+ + + F R + P+ LVA
Sbjct: 234 SDLTQDGIRDRFGKPSSVAIWDLPEFIEGLEMAG----FSARRHVVWLQMELARPVFLVA 289
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
M L+AA ++ +R + + V + GF LY + + G++G L P+ AA IP I
Sbjct: 290 MVLVAAGFTMRPARLGRTGLHVLAAVLLGFGLYYVRNFAQIMGENGQLPPILAAWIPPIA 349
Query: 347 TISLSILILLQKEDG 361
++ L++ ++LQ EDG
Sbjct: 350 SLLLALGLVLQMEDG 364
>gi|159043738|ref|YP_001532532.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
gi|157911498|gb|ABV92931.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
Length = 365
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 147/316 (46%), Gaps = 27/316 (8%)
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS-IWQLLNPFVVGSILLGIFTVLVIN 121
I ++IP I ++ I +F + RTSEL+++RA G S I L+ P +V ++ GI + V+N
Sbjct: 60 IYEVIPLIMVLATITLFLKMARTSELIVTRAAGRSAIRSLIAPVIVAGLIGGI-GISVLN 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIP------WMQISNPQQDIFIGAKKILPENHI 175
PI + +I ++ +D + + ++ W++ + P+ I I A I
Sbjct: 119 PIVAATSRIA----EETRDEVRGRATSVLALSSEGLWLRQAAPEGQIVIHAAGASLGGTI 174
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-GRIPID---KNSTTLNIP 231
D T + D I R A A + L V + GR+ + + S + +P
Sbjct: 175 LYDVTFLRFDADALPIERVAASRAELVPGAWDLTGVKVWDLTGRLNPEAGVRTSAWMQVP 234
Query: 232 IKMDGFQKFSEQFASRSFYEI------IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+ + + F S I I ++ + + + H T+ + P+ LV
Sbjct: 235 SDLT-LDQIRDSFGDPSAIPIWELPAFIDQLEAAGFAALSHRVWLHTE----LASPVFLV 289
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
AM LI A+ ++ +R + ++V + + GF +Y + + + G++G + +AAA P +
Sbjct: 290 AMVLIGAAFTMRHTRFGRTGLMVLFAVLLGFSMYFLKSFAQVLGEAGKIPVLAAAWFPPL 349
Query: 346 LTISLSILILLQKEDG 361
+ LS+ +LL +EDG
Sbjct: 350 AGVFLSLALLLHQEDG 365
>gi|89070357|ref|ZP_01157664.1| putative permease [Oceanicola granulosus HTCC2516]
gi|89044004|gb|EAR50179.1| putative permease [Oceanicola granulosus HTCC2516]
Length = 366
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 94/379 (24%), Positives = 164/379 (43%), Gaps = 35/379 (9%)
Query: 4 ILWRYFFKYYLKTTL------YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGA-VLAA 56
IL RYF + YL + L + LLGAM LV Q E+ + + +R + VLA
Sbjct: 2 ILHRYFARRYLTSFLTVSGLFFVLLGAMDLV---------EQANEVSDEAAARWSDVLAL 52
Query: 57 T--RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI 114
T P + +I+P + ++ I +F L R+SELV++RA G S L V+ L+G
Sbjct: 53 TLLNAPASLYEILPLLVILSTIALFLGLARSSELVVTRAAGRSALHALVAPVLVVALIGA 112
Query: 115 FTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIP------WMQISNPQQDIFIGAKK 168
+ V+NP+ + K + +D G + I+ W++ P+ I A +
Sbjct: 113 VALAVLNPLVAATSKEYEARVSALEDRG----ASIVSVDAGGLWLRQGGPEGQSVIRAAR 168
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ T IT ++ + R DA A + +L + + G + + +
Sbjct: 169 ANTDGTELSGVTFITFAEEGRPSRRIDARRARLEAGVWRLVEAKSWPLGDAGVPEAAAEE 228
Query: 229 N----IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNK--SNIFHNYRAETQFYFLIVIPL 282
+ + + Q + F + S I + F ++ + F R + + P
Sbjct: 229 HDVYEVATSLTAAQ-IRDSFGAPSSIPIWELPRFIDRLQTAGFSARRHQVWLQTELAKPA 287
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
LVAM LI A+ ++ R + ++ I F LY + + G++G + + AA
Sbjct: 288 FLVAMLLIGAAFTMRHQRGGRTGLMALVAILLSFGLYFLRNFAQILGENGQIPVLLAAWA 347
Query: 343 PVILTISLSILILLQKEDG 361
P + I+ S+ +LL KEDG
Sbjct: 348 PPLAGIAASVALLLHKEDG 366
>gi|126725341|ref|ZP_01741183.1| putative permease [Rhodobacterales bacterium HTCC2150]
gi|126704545|gb|EBA03636.1| putative permease [Rhodobacterales bacterium HTCC2150]
Length = 365
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 168/375 (44%), Gaps = 28/375 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSIS--RGAVLAATRVPL 61
IL YF + ++ L L ++F+ID+ E Q+ + S+ A LA P
Sbjct: 2 ILHLYFARKFITNFLMILFVFFGIIFLIDMVE---QLRRFSSNSVGMKEAAQLALLNAPG 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +I+P + ++ + +F NL RTSELVI+RA G S L ++ + LG+F V V N
Sbjct: 59 NLYRILPLLVILSTLALFLNLTRTSELVIARASGRSALGALLAPLLVTFTLGVFGVSVWN 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIP------WMQISNPQQDIFIGAKKILPENHI 175
PI + +L + D + S+ + W++ N + I A + I
Sbjct: 119 PIGAATA----NLYETISDRHLGRASNALSIGAEGLWLRQGNVEGQTVIHANETNQNGTI 174
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI--PIDKNSTTLNIPIK 233
+ T + D +++I+R +A A + L + + P STT I ++
Sbjct: 175 LGNVTFLAFDINSQVIYRIEAKTAKLETGGWVLNDTKRWDFKDTLNPELSASTTDTIRLQ 234
Query: 234 MDGFQK-FSEQFASRS---FYEI---IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+ QK E F + S F+E+ I + + S+ H T+ + +P L+A
Sbjct: 235 SNLTQKEIQESFGAPSDIPFWELPAFIASLENAGFSSTQHRVWYATE----LALPAFLMA 290
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
M LI A ++ SR + I++ I GF L+ + + G SG + + AA P +
Sbjct: 291 MVLIGAMFTMRHSRFGKTGIMLLGAIVMGFGLFFLKNFAQVLGNSGQIPVLLAAWTPPLA 350
Query: 347 TISLSILILLQKEDG 361
I L++ +L E+G
Sbjct: 351 GILLALGFILHTEEG 365
>gi|56697305|ref|YP_167671.1| YjgP/YjgQ family permease [Ruegeria pomeroyi DSS-3]
gi|56679042|gb|AAV95708.1| permease, YjgP/YjgQ family [Ruegeria pomeroyi DSS-3]
Length = 365
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 173/372 (46%), Gaps = 22/372 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--RVPL 61
IL RYF + ++++ L L + LV +IDL E Q+ + +S G ++ T P
Sbjct: 2 ILDRYFARRFIQSFLVIGLVFLGLVLLIDLIE---QLRRFEGFEVSMGQLVGLTLLNAPA 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS-IWQLLNPFVVGSILLGIFTVLVI 120
I +I+P + ++ IV+F L R+SELV++RAIG S I L+ P +V ++++G+ V +
Sbjct: 59 AISEILPLLMILSTIVLFVGLARSSELVVTRAIGRSGIRALVGPVLV-ALVIGLLAVTTL 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
NPI + L +++ G SD W++ + I A + D
Sbjct: 118 NPIVAATAVRYQTLADTYRNGGPSVLSLSDEGLWLRQGDAGGQSVIHATGFGGDGVTLFD 177
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLK--KVVEYQYGRIPIDKNST---TLNIPIK 233
T ++ R A+ A + + K L+ KV + G+ P + N+ + +P
Sbjct: 178 VTILSYAPDGSAQRRTIAESAQLQDGKWLLQKAKVWPLKVGQNP-EANAVYHDRIEMPTS 236
Query: 234 MDGFQKFSEQFASR---SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ ++ + R S Y++ + + ++ F R + + PL LV+M L+
Sbjct: 237 LTQ-ERIRDSLGRRETVSIYDLPQTIEQLQQAG-FSTKRHKVWLQVELARPLFLVSMVLV 294
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA-AALIPVILTIS 349
A+ ++ +R + V + GF LY + G++G +PVA AA P + I
Sbjct: 295 GAAFTMRHTRFGGTGLAVLSAVLLGFTLYFTRNFAQILGENG-QIPVALAAWAPPVAAIM 353
Query: 350 LSILILLQKEDG 361
L+ +LL EDG
Sbjct: 354 LTFGLLLHAEDG 365
>gi|197105169|ref|YP_002130546.1| hypothetical protein PHZ_c1706 [Phenylobacterium zucineum HLK1]
gi|196478589|gb|ACG78117.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
Length = 367
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 93/369 (25%), Positives = 162/369 (43%), Gaps = 16/369 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G L RY L L ++ +I E+ +Q+G + S L R P +
Sbjct: 5 GRLERYVMGRMLAGVGAALAVISAVILLIQFVELSSQVGTRADVGASGIFALTLLRAPSL 64
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
IQ ++PF L I F LNR SELV RA G+S W+ + P + +LG+ V V+NP
Sbjct: 65 IQILLPFCFLFGGIGAFVGLNRKSELVAMRAAGVSAWRFILPSAALAAILGVLAVAVLNP 124
Query: 123 IATS-GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK-KILPENHIWEDFT 180
A + + + + ++ + D+ W++ + + I I AK + +
Sbjct: 125 FAAALNARFEAERARLMENYLGDRPQDV--WIRQGDERTQIVIHAKDRETVAGAVVLKGV 182
Query: 181 SITIDKKN-----KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
S+ I +K + R +A A + +L+ V E G I S +L+I +D
Sbjct: 183 SVFIYEKTPRGAPEFRRRLEAAEARLMPGFWRLRDVREAGVGESSI--RSESLSIRSTLD 240
Query: 236 GFQKFSEQFASR---SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ E+FAS +F+ + + + ++ F +F L+ P++ AMT++AA
Sbjct: 241 A-EAAMERFASPEAIAFWRLPAAIRLTEQAG-FSAAGYRLRFQQLLATPVLFAAMTVLAA 298
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ SL R + G+ GF+++ + K+ IL AAA P ++ + +
Sbjct: 299 AFSLRLVRLGGLAGLAGAGVALGFVMFFFNQFAGALAKADILPLFAAAWAPTLVALLAGV 358
Query: 353 LILLQKEDG 361
+L EDG
Sbjct: 359 TLLCYTEDG 367
>gi|296532232|ref|ZP_06894979.1| permease YjgP/YjgQ family protein [Roseomonas cervicalis ATCC
49957]
gi|296267439|gb|EFH13317.1| permease YjgP/YjgQ family protein [Roseomonas cervicalis ATCC
49957]
Length = 369
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 161/324 (49%), Gaps = 22/324 (6%)
Query: 52 AVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQ-LLNPFVVGSI 110
A +AA R+P ++ QI+PF L+ IV F+ L+R SELV++RA G+S W LL P +V ++
Sbjct: 54 ASIAALRLPYVVLQILPFAVLLGGIVAFWRLSRASELVVARAAGVSAWSFLLGPVLV-AL 112
Query: 111 LLGIFTVLVINPIATS----GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD----- 161
+G + V++P++ + E++ ++ G + W++ ++ +
Sbjct: 113 AMGTLAITVVSPLSAAMMARAERLDATYLRN--ATGLSSLAGGKLWLRQADESVEPGGVA 170
Query: 162 IFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI 221
I G ++ + + + ++ I R +A LA + L++ V + R P+
Sbjct: 171 ILAGVPEVGRDGFLLRGASLWRFSATDRPIGRAEAPLARLEPGAWVLQEAVSFGRDRQPL 230
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASR---SFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+ TL +P + + E FAS SF+ + ++ + F R F+ L+
Sbjct: 231 P--AATLRLPTSLTP-DRIEETFASPDTLSFWALPGFIAVLESAG-FSAVRHRLTFHSLL 286
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+PL+ AM L+AA S+ +R ++ GI +GF L+ + + + FG++G LPVA
Sbjct: 287 SLPLLAAAMALLAAGFSMRHARRGGVGRMLGLGIAAGFALFLLDKVAEEFGQAGT-LPVA 345
Query: 339 -AALIPVILTISLSILILLQKEDG 361
AA P + + ++ +LL EDG
Sbjct: 346 LAAWAPSVAGLLFALTLLLYTEDG 369
>gi|315500013|ref|YP_004088816.1| permease yjgp/yjgq family protein [Asticcacaulis excentricus CB 48]
gi|315418025|gb|ADU14665.1| permease YjgP/YjgQ family protein [Asticcacaulis excentricus CB 48]
Length = 379
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 149/341 (43%), Gaps = 11/341 (3%)
Query: 27 LVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTS 86
++F+ID EI +G+ + S + L + P II ++PF L + F LNR S
Sbjct: 44 IIFLIDYVEISKSLGQRGDLSSLQIVGLLMLKSPNIILVLLPFAFLFGTLSAFVGLNRRS 103
Query: 87 ELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQK 146
EL+ RA G+S W+ + P + +LG TV V++P AT Q + + K
Sbjct: 104 ELIAMRAAGMSAWRFVLPAAGMAAILGALTVTVLSPAATVLADQYDRFAAQQSQSDTRAK 163
Query: 147 SDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN--KIIHRKDADLAIIYND 204
+ I Q QQ + ++ I F + ++D+ + + R DA A++
Sbjct: 164 TGEIYLRQGDGKQQTVIHAREQSEDGRLIDASFWTFSLDEAEIPRFLTRIDASEAVLRPG 223
Query: 205 KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD-GFQKFSEQFASRSFYEI---IKKMSFSN 260
+LK + G + N+ ++ + + F +F+ S +F+++ I ++ S
Sbjct: 224 TWQLKSARVSKPGETTLYYNTLSIGSNLSPERAFNRFAAP-QSTNFWQLPGTIAQIESSG 282
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
S + R L+ PLM AMT + A+ SL R + GI GFM++
Sbjct: 283 FSAAGYVLRLNQ----LLATPLMFAAMTALGAAFSLRLMRIGGLARLTLSGIVLGFMVFF 338
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ + S GK+ ++ A ++ +L+ EDG
Sbjct: 339 LNQLCGSLGKAEVIPAFLAGWATPFAAFLTAMTLLVYTEDG 379
>gi|144900091|emb|CAM76955.1| permease YjgP/YjgQ family [Magnetospirillum gryphiswaldense MSR-1]
Length = 367
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 170/372 (45%), Gaps = 39/372 (10%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
F + L +LG + L +I+L G+L +++ A+L ++P ++ ++PF
Sbjct: 15 FLLAFASVLAVILGVVFLFDIIELIRRAAGRGDLGVFNLVAMALL---KLPQMMHTVLPF 71
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS--- 126
++ +V F+ L RT ELV++R+ GIS WQ L P +V LG+ + NP+A +
Sbjct: 72 AVMIGAMVAFWRLTRTHELVVARSAGISAWQFLTPVLVLVAGLGVIELTAFNPMAATMYG 131
Query: 127 -----------GEKIGIDLIQQ--WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
G+ +D+ + W GD Q+ ++ Q+ QQ++ L
Sbjct: 132 RFQKMEDEILLGKTSALDVSEMGLWLREGDAQRQIVLHADQV---QQELL---TLNLRGV 185
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
H++ ++ + R A + + ++L V E + G+ + + L +
Sbjct: 186 HVF------VLNAEEHFTRRLSAASGRLADGVLELTDVWEMEGGKSSVHHPALKLATELT 239
Query: 234 MDGFQKFSEQFAS---RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
++ + + FAS SF+++ ++F K+ F + F L+ PL+ AM L+
Sbjct: 240 LE---RVHDNFASPETMSFWQLPAFITFFEKAG-FAATKHRMHFQSLLSSPLLYCAMVLV 295
Query: 291 AASVSLEFS-RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
AA SL + R+ + V G+ +GF +Y I+ +FG S L AA P ++
Sbjct: 296 AAVFSLRPNMRAGGLLMRVGGGVAAGFGIYFFNKIIYAFGLSATLPQGLAAWSPALVAGL 355
Query: 350 LSILILLQKEDG 361
+ + LL EDG
Sbjct: 356 IGVSGLLHLEDG 367
>gi|254460215|ref|ZP_05073631.1| permease, YjgP/YjgQ family [Rhodobacterales bacterium HTCC2083]
gi|206676804|gb|EDZ41291.1| permease, YjgP/YjgQ family [Rhodobacteraceae bacterium HTCC2083]
Length = 365
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 168/380 (44%), Gaps = 48/380 (12%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R FF+ +L T L FL + +IDL E Q + + + S S L P I QI
Sbjct: 9 RRFFRVFLTTLLIFL----AFLTLIDLVE-QMRRFDSKDVSFSDIVFLTLFNAPGAIYQI 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGIS-IWQLLNPFVVGSILLGIFTVLVINPIAT 125
+P + ++ + +F L RTSELV++R+ G S + L +P V +++ GI TV + NPI
Sbjct: 64 LPLVMILSAVSLFLTLARTSELVVTRSAGRSALVTLASPMCVAAVI-GITTVTLFNPIVA 122
Query: 126 SGEKIGIDLIQQ----------------WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKI 169
S + I L Q+ W GD+ +I + S+ + +F +
Sbjct: 123 STTRQYITLEQEYKSQKKNTVSIGRDGLWLRQGDENGQTVIHALSTSDDMRTLF--DARF 180
Query: 170 LPENHIWEDFTSITIDKKN------KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
L N + T I D+ ++I K L N + ++ I +
Sbjct: 181 LQYNTDSQPKTRIIADEARLTNTGWQLIRAKHWSLDTSGNPEETARE--------IDVLM 232
Query: 224 NSTTLNIPIKMDGFQKFS--EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
TTL I D F + + + ++ E +++ FS + H + +F P
Sbjct: 233 LPTTLTIENIRDSFSEPAAISIWEMDAYIEGLEEAGFSTRR---HKVWQQMEF----ARP 285
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
L L+AM L+ AS ++ +R + + V I GF LY + + G++G L + AA
Sbjct: 286 LFLMAMVLVGASFTMRHTRFGKAGVAVLAAIMMGFGLYYVRNFAQILGENGQLPTMIAAW 345
Query: 342 IPVILTISLSILILLQKEDG 361
P I +I L++ +LL EDG
Sbjct: 346 TPPIASILLALGLLLHMEDG 365
>gi|126728788|ref|ZP_01744603.1| permease, YjgP/YjgQ family protein [Sagittula stellata E-37]
gi|126710718|gb|EBA09769.1| permease, YjgP/YjgQ family protein [Sagittula stellata E-37]
Length = 364
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 90/371 (24%), Positives = 167/371 (45%), Gaps = 33/371 (8%)
Query: 12 YYLKTTLYFLLG--AMILVF--VIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
YY + L LG A+ +F ++DL + Q+G+ S L ++P + +I+
Sbjct: 6 YYARRFLSLFLGIFAVFALFQGLLDLIDELRQLGD--EVSFGETLQLVILKLPEGLYEIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGIS-IWQLLNPFVVGSILLGIFTVLVINPIATS 126
P + ++ + +F L R+SELV +RA G S + L+ P V ++L+G V ++NPI +
Sbjct: 64 PLVMILATVAMFIGLARSSELVATRAAGRSGLTALMAPATV-ALLIGAIIVAMMNPIVAA 122
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIP---WMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K DL + + ++G+ P W++ I A + PE D + +T
Sbjct: 123 TSKRYADLRETY-ESGNTSAVSFGPEGLWLRQGGEDGQSVIRAARANPEATELYDVSIVT 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---------GRIPIDKN-STTLNIPIK 233
R A+ A + + L + R+ ++ +TL
Sbjct: 182 YAPDGGPAMRIQAESAALSDGAWHLTDAKAWPLTPGLNPELGARLHVEYELPSTLTRESI 241
Query: 234 MDGFQKFSEQ--FASRSFYEIIKKMSFSNKSNI-FHNYRAETQFYFLIVIPLMLVAMTLI 290
D F + S + F +++ FS + +I ++N + PL LVAM L+
Sbjct: 242 RDRFGRPSAVAIWDLPQFIAGLEESGFSARRHIVWYNME--------LARPLFLVAMVLV 293
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A+ +++ +R + + V + GF LY + + + G++G L PV AA +P ++ L
Sbjct: 294 GAAFTMQPTRLARTGLAVLSAVLLGFGLYYVRSFAQIMGENGQLAPVVAAWVPPTASVLL 353
Query: 351 SILILLQKEDG 361
++ ++L EDG
Sbjct: 354 ALGLVLHMEDG 364
>gi|110680307|ref|YP_683314.1| YjgP/YjgQ family permease [Roseobacter denitrificans OCh 114]
gi|109456423|gb|ABG32628.1| permease YjgP/YjgQ family, putative [Roseobacter denitrificans OCh
114]
Length = 365
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 96/372 (25%), Positives = 166/372 (44%), Gaps = 22/372 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAV--LAATRVPL 61
IL YF + + + L+ + L +I L ++ +Q + +S + L P
Sbjct: 2 ILHLYFARRFAS---WLLIAFIALSALIALVDLVDQTRRFADRGVSATGIFELVILNTPQ 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I QI+P I L+ + F +L R+SEL+ +RA G S L V ILLG +N
Sbjct: 59 TISQILPLIVLLATVAFFLSLARSSELIATRASGRSAMGALVAPVSVVILLGTLATTTLN 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIP--WMQISNPQQDIFIGAKKILPENHIWEDF 179
PI + K +L Q ++ G S W++ + + I A + P+ + D
Sbjct: 119 PIVAATSKKYNELSQIYRTGGVSTLSISTEGLWLRQATDDGQMVIRAWRSNPDASVLFDV 178
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-IPIDKNST---TLNIPIKMD 235
T + + + R AD A + + L+ V ++ R I + N+T +L IP +
Sbjct: 179 TFLAYEVIGTPVRRIHADSAELKDGAWLLRNVKDWPLARGINSEGNATEHRSLTIPSSLT 238
Query: 236 GFQKFSEQFASRS------FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
++ E F S + IK+++ + S++ H +++ + PL LVAM L
Sbjct: 239 -VERIRESFGHPSTISIWEMTDFIKQLNQAGFSSLQHRVWLQSE----LARPLFLVAMVL 293
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
IA++ ++ +R + V + GF LY + + G++G L AA P I ++
Sbjct: 294 IASAFTMRHTRFGGTGVAVLAAVLLGFALYFVRSFGLILGENGQLPVYLAAWAPPIASVL 353
Query: 350 LSILILLQKEDG 361
L+ LL EDG
Sbjct: 354 LAFGPLLHAEDG 365
>gi|254510403|ref|ZP_05122470.1| permease, YjgP/YjgQ family [Rhodobacteraceae bacterium KLH11]
gi|221534114|gb|EEE37102.1| permease, YjgP/YjgQ family [Rhodobacteraceae bacterium KLH11]
Length = 382
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 103/372 (27%), Positives = 177/372 (47%), Gaps = 21/372 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV--PL 61
IL RYF + ++++ + ++G + L +I ++ I+ Q+ + +S G +L T + P
Sbjct: 18 ILDRYFARRFVQS--FLVIGGIFLTLMILIDLIE-QVRRFDSVDLSFGQLLQLTLLNTPA 74
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS-IWQLLNPFVVGSILLGIFTVLVI 120
I +++P + ++ I +F L R+SELV++RAIG S I LL P + ++++G F V ++
Sbjct: 75 AISEMLPLLMILATIALFVGLARSSELVVTRAIGRSGIRALLAPVFI-ALMIGGFAVALL 133
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKS---DIIPWMQISNPQQDIFIGAKKILPENHIWE 177
NPIA + + L +++ G S + + Q S Q + + ++
Sbjct: 134 NPIAAATSEEFQRLADGYRNQGSSALSISGEGLWLRQASASGQSVIHATGTVNGDDFALH 193
Query: 178 DFTSITID---KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIP 231
D T T K N+ I + ADL Y ++ KV + P + N+TT LN+P
Sbjct: 194 DVTITTFSSDGKPNQQIAARQADLENGYW-TLRQAKVWTLEDDLNP-ETNATTHEVLNLP 251
Query: 232 IKM--DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ D Q S S Y++ + +S ++ F + E + PL LV+M L
Sbjct: 252 TTLTRDRILDTLGQQDSVSVYDLPQLISDLREAG-FATKQYEVWLQVQLARPLFLVSMVL 310
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
I A+ ++ R I V + GF +Y I + G++G L AA P I
Sbjct: 311 IGAAFTMRHVRFGGTGIAVLTAVLLGFGIYFIRNFAQILGENGQLPIFVAAWAPPFAGIL 370
Query: 350 LSILILLQKEDG 361
LS+ +LL EDG
Sbjct: 371 LSLGLLLHAEDG 382
>gi|259419234|ref|ZP_05743151.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
gi|259345456|gb|EEW57310.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
Length = 368
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/370 (23%), Positives = 161/370 (43%), Gaps = 23/370 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--RVPLIIQQ 65
Y+ K + + +FL+ A +L+ ++ L ++ Q + G +L T P + +
Sbjct: 6 YYAKRFFQ---WFLVIAAVLMSLVMLIDLSEQFRRFDGQDLQFGQLLELTLLNTPAALNE 62
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+P I ++ IV++ + R+SELV++RA+G S + L P VV +++LG V +NPI
Sbjct: 63 FLPLIMILTTIVLYVGMARSSELVVTRALGRSGIRALLPPVVVALILGGLAVSTLNPIVA 122
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIP---WMQIS--NPQQDIFIGAKKILPENHIWEDFT 180
+ L + ++ G + W++ N Q I + EN D +
Sbjct: 123 ATTNRFDSLSESYRQTGGPAAVSLSGEGLWLRQGGQNGQSVIHAANYRGDAENLFLYDVS 182
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY--GRIP--IDKNSTTLNIPIKMDG 236
+T R A A + + L+ +Q G P K+ L +P +
Sbjct: 183 ILTYTPDGGPTRRTIAAEARLDGEDWVLRDAKVWQLIVGVNPERSAKSYDELRLPTTLTN 242
Query: 237 FQ-----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ ++E + + IK +S + F R + + PL LVAM L+
Sbjct: 243 ERIRDTLGYAEGISIYELPQTIKSLSEAG----FSTTRFQVWLQVELARPLFLVAMVLVG 298
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
A+ ++ +R I V + GF LY + + G++G + + AA P + +I L+
Sbjct: 299 AAFTMRHTRLGGTGIAVLTSVLLGFALYFVHNFARILGENGQIPILLAAWAPPVASILLT 358
Query: 352 ILILLQKEDG 361
+ +LL EDG
Sbjct: 359 MGLLLHAEDG 368
>gi|254486546|ref|ZP_05099751.1| permease, YjgP/YjgQ family [Roseobacter sp. GAI101]
gi|214043415|gb|EEB84053.1| permease, YjgP/YjgQ family [Roseobacter sp. GAI101]
Length = 365
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/383 (24%), Positives = 164/383 (42%), Gaps = 44/383 (11%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--RVPL 61
IL YF + ++ T + L+ A++ +I L ++ Q + + I + T P
Sbjct: 2 ILHLYFARRFV--TGFVLISAVLFALLI-LVDMVEQARKFAEHDIGWQRLFGMTLLNTPE 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P I ++ +V+F +L R+SELV++RA G S L V + ++GI V ++N
Sbjct: 59 TLNLILPLIMILATVVLFLSLARSSELVVTRASGRSALSALQAPVWVAFIIGIMAVGMLN 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQK--SDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
PI + K I L + + G SD W++ Q I A + + + D
Sbjct: 119 PIVAATAKRYIQLSESIRAGGVSTLSISDEGLWLRQGGDQGQTVIRAWRSNADASVLYDV 178
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T +T + I R +A A + +D G + S L + + +G +
Sbjct: 179 TFLTYAAQGGPIRRIEASSAALEDD------------GWVLTGAKSWPLELGVNAEGNAE 226
Query: 240 FSEQFASR------------------SFYEI---IKKMSFSNKSNIFHNYRAETQFYFLI 278
E S Y++ I ++ + S H +T+ +
Sbjct: 227 VFETLTLPSTLTLDRIRESITDPGVVSIYDLPGFIHQLELAGFSPRRHKVWLQTE----L 282
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
P LVAM L+A++ ++ +R + V + GF LY I + + G++G + V
Sbjct: 283 ARPFFLVAMVLVASAFTMRHTRFGGTGVAVLASVLLGFGLYFIRSFAQILGENGQIPVVL 342
Query: 339 AALIPVILTISLSILILLQKEDG 361
AA P + +I L+I +LL EDG
Sbjct: 343 AAWAPPVASILLAIGLLLHAEDG 365
>gi|84516314|ref|ZP_01003674.1| permease, YjgP/YjgQ family [Loktanella vestfoldensis SKA53]
gi|84510010|gb|EAQ06467.1| permease, YjgP/YjgQ family [Loktanella vestfoldensis SKA53]
Length = 364
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 90/372 (24%), Positives = 160/372 (43%), Gaps = 23/372 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + +L T L L +++ +DL E Q++ + L +P I
Sbjct: 2 ILHRYFARRFLMTFLGVLAVFFLIMLFLDLVE-QSRRYASAEAGLRDLLTLTLLNIPRAI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS-IWQLLNPFVVGSILLGIFTVLVINP 122
+I+P I ++ I +F L R+SELV++RA G S + +L P VG +L+GI V V+NP
Sbjct: 61 YEILPLIMILAAIGLFLGLARSSELVVTRAAGRSALRAILAPLAVG-LLIGIVAVAVLNP 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIP--------WMQISNPQQDIFIGAKKILPENH 174
I + K +++ G + + W++ + I A +
Sbjct: 120 IVAATSK-------EYEARGGALRGNASALSIGSSGLWLRQGASDEQTVIRAAGANLDGT 172
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ D T +T R +A A++ + L+ + +G + +++
Sbjct: 173 VLTDVTFLTFTPDVGPARRVNAASAVLTDGAWVLRNAKVWTFGGTLTPEAGAVTQATMRI 232
Query: 235 DGF---QKFSEQFASRSFYEIIKKMSFSN--KSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ + F + S I + +F + + F R + I P+ L+AM +
Sbjct: 233 ASTLTPDQIRDSFGTPSSIPIWQLPAFIDRLREAGFSAQRHLVWLHSEIAQPVFLMAMVM 292
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
I AS ++ R + + V I F++Y I + G++G L AA P + ++
Sbjct: 293 IGASFTIRHQRGGRTGLAVMTAILLAFVIYFIRNFAQVLGENGQLPAALAAWAPPLAAMA 352
Query: 350 LSILILLQKEDG 361
LS+ ILL EDG
Sbjct: 353 LSLGILLHNEDG 364
>gi|84500988|ref|ZP_00999223.1| permease, YjgP/YjgQ family protein [Oceanicola batsensis HTCC2597]
gi|84391055|gb|EAQ03473.1| permease, YjgP/YjgQ family protein [Oceanicola batsensis HTCC2597]
Length = 365
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 166/381 (43%), Gaps = 49/381 (12%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
WR F + ++ FLL +M+ ID+ E ++ P ++S+ L P I
Sbjct: 9 WR-FLRIFIGLLAVFLLMSML----IDVAEHLRRLSSTPA-TLSQVLRLVLLNAPEGIYT 62
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGIS-IWQLLNPFVVGSILLGIFTVLVINPIA 124
I+P I ++ + +F L RTSELV++RA G S + L++P +V + +G+ V ++NPI
Sbjct: 63 ILPLIMILATVALFLGLARTSELVVTRAAGRSALRSLVSPVIV-AFAIGVIGVAMVNPIV 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIP------WMQISNPQQDIFIGAKKILPENHIWED 178
+ K L++ ++ G +D++ W++ + I A + P+ D
Sbjct: 122 AATSKRYAALLESYQSGG----ADVLSLSAEGLWLRQGGAEGQTVIRAARSNPQATELYD 177
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-PIDKNSTTLNIPIKMDGF 237
T I R +A A + + E RI P+ + + + + F
Sbjct: 178 VTMIAYAPDGGPEKRIEAARARL------IAGAWELHDARIWPLARGTNPEARTERRESF 231
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNI----------------FHNYRAETQFYFLIVIP 281
+ S S E + +F S I F R F + P
Sbjct: 232 EVPS------SLTEARIRDTFGEPSAIPVWDMPTYIGLLTEAGFSARRHAVWFQMELAKP 285
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA-AA 340
L LVAM LIAA+ ++ R + I V I GF LY + ++ G++G +PVA AA
Sbjct: 286 LFLVAMVLIAAAFTMRHVRFGKTGIAVLSAIMLGFALYYVRNFVQILGENG-QIPVALAA 344
Query: 341 LIPVILTISLSILILLQKEDG 361
P + ++ L++ +LL EDG
Sbjct: 345 WAPPVASVLLALGLLLHMEDG 365
>gi|89054304|ref|YP_509755.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
gi|88863853|gb|ABD54730.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
Length = 364
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 153/350 (43%), Gaps = 21/350 (6%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNIVVFFNL 82
M ++ ID+ + ++G +S AVL A +P I ++P ++ +V+F L
Sbjct: 23 MAILLPIDMADQLRRIGSDQGFS----AVLQLALLNLPRSITGLMPLFVMLATLVLFLGL 78
Query: 83 NRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP-IATSGEKIGIDLIQQWKDN 141
RTSELV+ RA G S + V+ ++++G ++L++NP +AT+ + + L + +
Sbjct: 79 ARTSELVVVRAAGRSALKSAASPVIVALIIGGLSLLILNPLVATTARQYDLTLA---RLS 135
Query: 142 GDKQKSDIIP----WMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDAD 197
G + +S + W++ + I A + D + T D ++ R DA
Sbjct: 136 GLESRSVSVTGEGFWLRQGTGSEQTVIRASATNSDGTHLFDASFFTFDADGALLERMDAR 195
Query: 198 LAIIYNDKVKLKKVVEY---QYGRIPIDKNS-TTLNIPIKMDGFQKFSEQFASRSFYEII 253
A++ L V + Q D TL +P + ++ + F + I
Sbjct: 196 EAVLARAAWTLTDVKRWPLAQSDNAEADAELFPTLTLPSTLTP-EQIRDSFGNPETVPIF 254
Query: 254 KKMSFSNKSNI--FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYG 311
+ F + N F + T F + PL+L AM LI A ++ +R + ++V
Sbjct: 255 ELPGFIRQLNDAGFAALQHRTWFQMQLSSPLLLAAMVLIGAGFTMRHTRFGKTGVMVLGA 314
Query: 312 IFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
I GF + + + G++G L A P I I L+I LL EDG
Sbjct: 315 ILLGFGVVFLRRFAEVLGETGQLAASLVAWTPPIAAILLAIGFLLHTEDG 364
>gi|163739705|ref|ZP_02147113.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
gi|163743162|ref|ZP_02150544.1| permease, YjgP/YjgQ family protein [Phaeobacter gallaeciensis 2.10]
gi|161383579|gb|EDQ07966.1| permease, YjgP/YjgQ family protein [Phaeobacter gallaeciensis 2.10]
gi|161386935|gb|EDQ11296.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
Length = 367
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 160/353 (45%), Gaps = 24/353 (6%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--RVPLIIQQIIPFITLVVNIVVFFNL 82
+ LV +IDLNE Q+ +S G + T P + + +P I ++ IV+F L
Sbjct: 23 LTLVMLIDLNE---QIRRFEAQDLSLGQLFGLTLLNTPAALSEFLPLIMILTTIVLFIGL 79
Query: 83 NRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNG 142
R+SELV++RAIG S + L V+ + L+G+ V +NPI + DL + +++ G
Sbjct: 80 ARSSELVVTRAIGRSGIRALAAPVLLAALIGVLAVSTLNPIVAATSNRYRDLAETYRNGG 139
Query: 143 DKQKSDIIP--WMQISNPQQDIFIGAKKILPENH--IWEDFTSITIDKKNKIIHRKDADL 198
S W++ Q I A + D T ++ + + I + A+
Sbjct: 140 PAALSLTGEGLWLRQGGAQGQSVIHATGYSGDTDDITLYDVTILSYGPEGRPIRQTLAEE 199
Query: 199 AII-YNDKVKLK-KVVEYQYGRIP---IDKNST-TLNIPIKMDGFQKFSEQFASRSFYEI 252
A + D V +K KV G P +++ST L+ + + + S Y++
Sbjct: 200 AALDGGDWVLIKAKVWPLIVGVNPETNAERHSTLRLSTTLTSERIRDTLGTATGISVYDL 259
Query: 253 ---IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVA 309
I+++S + F R E + PL L+AM L+ A+ ++ +R + V
Sbjct: 260 PATIRELSEAG----FSTKRYEVWLQVELARPLFLIAMALVGAAFTMRHARFGGTGLAVL 315
Query: 310 YGIFSGFMLYTIITIMKSFGKSGILLPVA-AALIPVILTISLSILILLQKEDG 361
+ GF LY + + G++G +PVA A P + I L++ +LL EDG
Sbjct: 316 TAVLLGFGLYFLRNFAQILGENG-QIPVALAGWAPPVAAILLTMGLLLHAEDG 367
>gi|126462313|ref|YP_001043427.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17029]
gi|126103977|gb|ABN76655.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17029]
Length = 364
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 88/374 (23%), Positives = 158/374 (42%), Gaps = 27/374 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSIS--RGAVLAATRVPL 61
IL RY + +L+ L L+ +ID + +QM + I+ + +L+ RVP
Sbjct: 2 ILSRYIARRFLRMVFIVFLAFFGLMMLID---VLDQMRRFSDEGITLVQAGLLSLLRVPA 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P I ++ + +F L R+SELV+ RA G S + L +V ++ LG V V+N
Sbjct: 59 TLYTILPLIVILAAVALFLGLARSSELVVVRAAGRSGLRFLVAPMVVALALGTVAVTVLN 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIP---WMQISNPQQDIFIGAKKILPENHIWED 178
PI +G D G+ I W++ + I A + +
Sbjct: 119 PI-VAGTSRQYDAAAGRLARGEASILSISKEGLWLRQGGSGEQTVIHALRSNTDGTRLYA 177
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-PIDKNSTTLNIPI----K 233
T +T D + + R A+ A + +L + P + S N+ +
Sbjct: 178 VTFLTFDAEGRPTGRIAAEQAALERGYWQLSGAKSWDLTEANPEARASLPGNLRVTSELT 237
Query: 234 MDGFQKFSEQFASRSFYEI------IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+G Q ++ +E+ +++ FS + +R Q F +P L AM
Sbjct: 238 REGIQDSFGDPSAIPIWELPAYVAGLERAGFSAR-----KHRVWMQMEF--ALPATLAAM 290
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
L+AA ++ SR +V + GF L+ + + G++G + + AA P ++
Sbjct: 291 VLVAAGFTMRHSRFGGTGRMVLLALLGGFSLFFLRNFAQVLGENGQIPILLAAWSPPLIG 350
Query: 348 ISLSILILLQKEDG 361
+ S+ +LL EDG
Sbjct: 351 VMGSLGLLLHLEDG 364
>gi|146277167|ref|YP_001167326.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17025]
gi|145555408|gb|ABP70021.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17025]
Length = 364
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 89/371 (23%), Positives = 155/371 (41%), Gaps = 21/371 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLL---GAMILVFVIDLNEIQNQMGELPNYSIS--RGAVLAATR 58
IL RY + +L+ L G M+L+ V+D QM + I+ + +L+ R
Sbjct: 2 ILSRYIARRFLRMVFIVFLVFFGLMMLIDVLD------QMRRFSDEGITLVQAGLLSLLR 55
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
VP I I+P I ++ + +F L RTSELV+ RA G S + L ++ ++ +G V
Sbjct: 56 VPATIYTILPLIVILAAVALFLGLARTSELVVVRAAGRSGLRFLVAPMIVALAIGAAAVT 115
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIP---WMQISNPQQDIFIGAKKILPENHI 175
V+NPI +G D G+ I W++ + I A + +
Sbjct: 116 VLNPI-VAGTSRQYDAAASRLARGEASILSISEEGLWLRQGGAEGQTVIHAARSNTDGTR 174
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-PIDKNSTTLNIPIKM 234
T +T D R A+ A + +L + P + NI +
Sbjct: 175 LYAVTFLTFDGNGLPRSRVAAEQAALETGYWQLSGAKSWDLTLANPEASANLEGNIRVPS 234
Query: 235 D----GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
D G Q ++ +E+ ++ ++ F + + +P ML AM L+
Sbjct: 235 DLTREGIQDSFGDPSAIPIWELPAYVAGLERAG-FSARKHRVWMQMELALPFMLAAMVLV 293
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
AA ++ SR +V + SGF L+ + + G++G + + AA P ++ +
Sbjct: 294 AAGFTMRHSRFGGTGRMVLLALLSGFGLFFLRNFAQVLGENGQIPILLAAWSPPLIGVMG 353
Query: 351 SILILLQKEDG 361
S+ +LL EDG
Sbjct: 354 SLGLLLHLEDG 364
>gi|304321347|ref|YP_003854990.1| putative permease [Parvularcula bermudensis HTCC2503]
gi|303300249|gb|ADM09848.1| predicted permease [Parvularcula bermudensis HTCC2503]
Length = 364
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/344 (20%), Positives = 151/344 (43%), Gaps = 12/344 (3%)
Query: 26 ILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRT 85
++V +DL E + +P L R P +I + PFI L + + + R
Sbjct: 25 LIVVSVDLIEAMRDIARIPGAGPIAALRLTLLRTPQLILSLSPFIFLFGTLWAYGQMARM 84
Query: 86 SELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQ 145
SE+ + RA G+S+W+L+ P V+ ++ G+ ++P+A + + + + +
Sbjct: 85 SEIAVLRAAGLSVWRLIFPPVILAVAAGLLIATTLDPLAARLAETAQTVKNEARSGEEAA 144
Query: 146 KSDIIPWMQISNPQQD--IFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYN 203
W++ + D + A++ + + E+ T + I R DA A+I
Sbjct: 145 AKRPHLWLRQNEIGSDGIALLHAERYRENDPVLEEVTVWRRTQDGAFIERLDAPRALIDA 204
Query: 204 DKVKLKKVVEYQYGRIPIDKNSTTLNIPIK-----MDGFQKFSEQFASRSFYEIIKKMSF 258
++L + + + +P+ +D ++ ++ + + E I+ M
Sbjct: 205 QVLRLMQARRSTSIATTAPQIEAEIEVPVAIDLRLLDQDRQTADTLSVWALPETIRLMGD 264
Query: 259 SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF-SRSNQPRIIVAYGIFSGFM 317
+ + R ++ L +PL L AM ++A + +L +R +++ GI +GF+
Sbjct: 265 AGMTTTKFRLR----YHALWSLPLKLAAMVILACAFALGMNARGGGTALLMGMGILAGFL 320
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
L+ + + + ++ I+ AA P +L + ++ +LL +EDG
Sbjct: 321 LFILSELSAAIAEAAIVPVGLAAWAPALLAVLFAVTLLLYREDG 364
>gi|77463458|ref|YP_352962.1| putative permease [Rhodobacter sphaeroides 2.4.1]
gi|221639316|ref|YP_002525578.1| permease Yjgp/YjgQ family protein [Rhodobacter sphaeroides KD131]
gi|332558335|ref|ZP_08412657.1| Permease YjgP/YjgQ family protein precursor [Rhodobacter
sphaeroides WS8N]
gi|77387876|gb|ABA79061.1| putative permease [Rhodobacter sphaeroides 2.4.1]
gi|221160097|gb|ACM01077.1| Permease YjgP/YjgQ family protein precursor [Rhodobacter
sphaeroides KD131]
gi|332276047|gb|EGJ21362.1| Permease YjgP/YjgQ family protein precursor [Rhodobacter
sphaeroides WS8N]
Length = 364
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 89/375 (23%), Positives = 159/375 (42%), Gaps = 29/375 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSIS--RGAVLAATRVPL 61
IL RY + +L+ L L+ +ID + +QM + I+ + +L+ RVP
Sbjct: 2 ILSRYIARRFLRMVFIVFLAFFGLMMLID---VLDQMRRFSDEGITLVQAGLLSLLRVPA 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQ-LLNPFVVGSILLGIFTVLVI 120
+ I+P I ++ + +F L R+SELV+ RA G S + L+ P VV ++ LG V V+
Sbjct: 59 TLYTILPLIVILAAVALFLGLARSSELVVVRAAGRSGLRFLVAPMVV-ALALGTVAVTVL 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIP---WMQISNPQQDIFIGAKKILPENHIWE 177
NPI +G D G+ I W++ + I A + +
Sbjct: 118 NPI-VAGTSRQYDAAAGRLARGEASILSISKEGLWLRQGGSGEQTVIHALRSNTDGTRLY 176
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-PIDKNSTTLNIPI---- 232
T +T D + + R A+ A + +L + P + N+ +
Sbjct: 177 AVTFLTFDAEGRPTGRIAAEQAALERGYWQLSGAKSWDLTEANPEARAGLPGNLRVTSEL 236
Query: 233 KMDGFQKFSEQFASRSFYEI------IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+G Q ++ +E+ +++ FS + +R Q F +P L A
Sbjct: 237 TREGIQDSFGDPSAIPIWELPAYVAGLERAGFSAR-----KHRVWMQMEF--ALPATLAA 289
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
M L+AA ++ SR +V + GF L+ + + G++G + + AA P ++
Sbjct: 290 MVLVAAGFTMRHSRFGGTGRMVLLALLGGFSLFFLRNFAQVLGENGQIPILLAAWSPPLI 349
Query: 347 TISLSILILLQKEDG 361
+ S+ +LL EDG
Sbjct: 350 GVMGSLGLLLHLEDG 364
>gi|255263663|ref|ZP_05343005.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
gi|255105998|gb|EET48672.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
Length = 363
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/375 (23%), Positives = 161/375 (42%), Gaps = 30/375 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAAT--RVP 60
IL RYF + + L FL G ++ F I ++ Q+G+ +S + T P
Sbjct: 2 ILHRYFARRFF---LAFL-GVFVIFFAILGFLDMVEQLGKFSGDDVSFTQTVGLTLLNTP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +I+P + ++ I +F +L R+SE+V++RA G S + L+ + ++L+G+F V V+
Sbjct: 58 QALYRILPLVMILSTIALFLSLARSSEMVVTRAAGRSAIRALSAPIFVAVLIGLFAVAVL 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIP---------WMQISNPQQDIFIGAKKILP 171
NPI + Q+++ +SD W++ + Q I A+
Sbjct: 118 NPIVAATS-------QEYEKRASDYRSDDAQVLSVSAEGLWLRQGDNTQQTVIRAEAATL 170
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TL 228
E T ++ I R +AD A + +L + + +ST L
Sbjct: 171 EGTELSRVTFLSFTDAGPIT-RIEADSARLTPGAWELTNAKSWPLDAPNPEASSTKHDVL 229
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNK--SNIFHNYRAETQFYFLIVIPLMLVA 286
+P + Q + F + S I + +F + + F R F + +P +V+
Sbjct: 230 RVPSTLTRDQ-IRDGFGTPSAIPIWELPAFIKQLETAGFSARRHAVWFNMELALPAFMVS 288
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
M ++AA +++ R + + V I GF Y + + G++G + AA
Sbjct: 289 MVMVAAGLTMRHQRGGRVGLSVLAAIMLGFAFYFLRNFAQILGENGQISATLAAWATPAA 348
Query: 347 TISLSILILLQKEDG 361
I L++ +LL EDG
Sbjct: 349 AICLALGMLLHLEDG 363
>gi|83942393|ref|ZP_00954854.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. EE-36]
gi|83846486|gb|EAP84362.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. EE-36]
Length = 365
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/376 (23%), Positives = 163/376 (43%), Gaps = 30/376 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--RVPL 61
IL YF + ++ + F+L + +L ++ L ++ +Q +Y I + T P
Sbjct: 2 ILHLYFARRFI---MGFILISAVLFSLLVLVDMVDQARRFSSYDIGWLRLFGMTLLNTPE 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P I ++ +V+F +L R+SELV++RA G S L + + ++G+ V ++N
Sbjct: 59 TMNLILPLIMILATVVLFLSLARSSELVVTRAAGRSALSALQAPIWVAFIIGVMAVGMLN 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
PI + K I L + G SD W++ + + I A + + + D
Sbjct: 119 PIVAATAKRYIQLSDSIRAGGTSVLSVSDEGLWLRQGSDEGQTVIRAWRSNKDASVLYDV 178
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T ++ + R +AD A + N L + P++ D
Sbjct: 179 TFLSYAPEGGPARRIEADSAALENGIWTLTDAKSW-----PLEVGVNAEGAAETFDTLTL 233
Query: 240 FSEQFASR-----------SFYEI---IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
S R S Y++ IK++ + S H +T+ + P LV
Sbjct: 234 PSTLTLDRIRDSITDPGAVSIYDLPDYIKQLELAGFSPRRHKVWLQTE----LARPFFLV 289
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
AM L+A++ ++ +R + V + GF LY I + + G++G + + AA P +
Sbjct: 290 AMVLVASAFTMRHTRFGGTGVAVLASVLMGFGLYFIRSFAQILGENGQIPVLLAAWAPPV 349
Query: 346 LTISLSILILLQKEDG 361
+I L++ +LL EDG
Sbjct: 350 ASILLALGLLLHSEDG 365
>gi|83953613|ref|ZP_00962334.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. NAS-14.1]
gi|83841558|gb|EAP80727.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. NAS-14.1]
Length = 365
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 165/376 (43%), Gaps = 30/376 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--RVPL 61
IL YF + ++ + F+L + +L ++ L ++ +Q +Y I + T + P
Sbjct: 2 ILHLYFARRFI---MGFILISAVLFSLLVLVDMVDQARRFSSYDIGWLRLFGMTLLKTPE 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P I ++ +V+F +L R+SELV++RA G S L + + ++G+ V ++N
Sbjct: 59 TMNLILPLIMILATVVLFLSLARSSELVVTRAAGRSALSALQAPIWVAFIIGVMAVGMLN 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
PI + K I L + G SD W++ + + I A + + + D
Sbjct: 119 PIVAATAKRYIQLSDSIRAGGTSVLSVSDEGLWLRQGSDEGQTVIRAWRSNKDASVLYDV 178
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T ++ ++ R +AD A + + L + P++ D
Sbjct: 179 TFLSYAPESGPARRIEADSAALEDGIWTLTDAKSW-----PLEVGVNAEGAAETFDTLTL 233
Query: 240 FSEQFASR-----------SFYEI---IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
S R S Y++ IK++ + S H +T+ + P LV
Sbjct: 234 PSTLTLDRIRDSITDPGAVSIYDLPDYIKQLELAGFSPRRHKVWLQTE----LARPFFLV 289
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
AM L+A++ ++ +R + V + GF LY I + + G++G + + AA P +
Sbjct: 290 AMVLVASAFTMRHTRFGGTGVAVLASVLMGFGLYFIRSFAQILGENGQIPVLLAAWAPPV 349
Query: 346 LTISLSILILLQKEDG 361
+I L++ +LL EDG
Sbjct: 350 ASILLALGLLLHSEDG 365
>gi|254453977|ref|ZP_05067414.1| permease, YjgP/YjgQ family [Octadecabacter antarcticus 238]
gi|198268383|gb|EDY92653.1| permease, YjgP/YjgQ family [Octadecabacter antarcticus 238]
Length = 362
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 161/371 (43%), Gaps = 27/371 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYF + + T G +L+ +IDL E + G + S+ L+ +P I I
Sbjct: 3 RYFARRFAWTFAATFGGFFVLMLLIDLVEQLRRYGG--DASLGDMFQLSLLNLPTGIYAI 60
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGIS-IWQLLNPFVVGSILLGIFTVLVINPIAT 125
+P I ++ + F L R+SEL+++RA G S + L+ P +V ++++G + V+NP+
Sbjct: 61 LPLIMVLATVTTFLGLARSSELIVTRAAGRSALNALIAPLIV-TLIIGAIAIGVLNPLVA 119
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIP---------WMQISNPQQDIFIGAKKILPENHIW 176
+ +++++ + +SD W++ + I A + +
Sbjct: 120 A-------TLKEYEARENALRSDGPSVLAISENGLWLRQGDDNSQTVIRAGRANLDGTQL 172
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY--QYGRIP--IDKNSTTLNIPI 232
+D T IT R +A A + +L + + GR+ + TTL IP
Sbjct: 173 QDVTFITFPPTGGPTRRIEAASANLTQGAWELSEAKAWPLNSGRVAESVATTHTTLRIPS 232
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI--FHNYRAETQFYFLIVIPLMLVAMTLI 290
+ Q + F S I + +F ++ + F R + F + P L+AM LI
Sbjct: 233 TLTADQ-IRDSFGVPSSIPIWELPAFIDRLEVAGFSAARHQVWFQMELAQPAFLLAMVLI 291
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A ++ R + ++V I F L+ + + G++G + AA P + I+
Sbjct: 292 GAGFTMRHQRGGRTGVMVLTAILICFALFFLRNFAQILGENGQISAGLAAWAPPLAAIAA 351
Query: 351 SILILLQKEDG 361
S+ +LL EDG
Sbjct: 352 SLGLLLHLEDG 362
>gi|85706341|ref|ZP_01037435.1| permease, YjgP/YjgQ family protein [Roseovarius sp. 217]
gi|85669114|gb|EAQ23981.1| permease, YjgP/YjgQ family protein [Roseovarius sp. 217]
Length = 363
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 163/366 (44%), Gaps = 12/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + + + FL + LV ++ L ++ +++G+ P + + + ++P
Sbjct: 2 ILERYFGRRFFMS---FLGVTVTLVVMLGLIDLMDELGDFPELAFGQVLGIVLLKLPEAY 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IIP + ++ ++ +F L RTSELV+ RA G S Q L ++ +G+ + V NP+
Sbjct: 59 YEIIPLVMILASVALFLRLARTSELVVLRASGRSALQGLLAPAAVALAIGLLGLAVGNPL 118
Query: 124 ATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K DL+ + + + D + W++ S + I A + + +
Sbjct: 119 VAATSKRHHDLVNSYSGQASSDLAIASEGLWLRQSAAEGQTVIYAARASSDLGTLYAPSF 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKL--KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ- 238
K + R A A + L K+ + G P + + D Q
Sbjct: 179 YDFAPDGKPLRRISATSAQLEEGAWVLTEAKIWDLAQGVNPEASAREDAQMTVPSDLTQD 238
Query: 239 KFSEQFASRSF---YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + F S + +E+ K ++ ++ F R F + P+ LVA+ LI+A+ +
Sbjct: 239 RILDSFGSPEYVPIWELPKFIAQLEEAG-FSARRYAIWFQSELAQPVFLVALVLISAAFT 297
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ +R + V + GF L+ I + G++G + + AA P + ++ + + IL
Sbjct: 298 MQHTRGANVGLSVLTAVLLGFGLHYIRNFAQILGENGQIPILLAAWAPPVASLFIGLGIL 357
Query: 356 LQKEDG 361
L EDG
Sbjct: 358 LHLEDG 363
>gi|254477617|ref|ZP_05091003.1| permease YjgP/YjgQ [Ruegeria sp. R11]
gi|214031860|gb|EEB72695.1| permease YjgP/YjgQ [Ruegeria sp. R11]
Length = 367
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 155/356 (43%), Gaps = 30/356 (8%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--RVPLIIQQIIPFITLVVNIVVFFNL 82
+ LV +IDLNE Q+ +S G + T P + + +P I ++ IV+F L
Sbjct: 23 LTLVMLIDLNE---QIRRFDAQDLSFGQLFGLTLLNAPAALSEFLPLIMILTTIVLFVGL 79
Query: 83 NRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNG 142
R+SELV++RAIG S + L VV + +G+ V +NPI + DL + +++ G
Sbjct: 80 ARSSELVVTRAIGRSGIRALAAPVVLAAFIGLLAVSTLNPIVAATSNHYRDLAETYRNGG 139
Query: 143 DKQKSDIIP--WMQISNPQQDIFIGAKKILPENHIWEDFT--SITI---DKKNKIIHRKD 195
S W++ Q I AK + ED T +TI + + I +
Sbjct: 140 PAALSLTGEGLWLRQGGAQGQSVIHAKGYSGDV---EDVTLLGVTILSYGPEGRPIRQTV 196
Query: 196 ADLAIIYNDKVKL--KKVVEYQYGRIP----IDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
A A + L KV G P + S L+ + + + S
Sbjct: 197 ARSATLDGSDWVLTNAKVWPLVTGVNPETNATEHASLRLSTTLTSERIRDTLGTATGISV 256
Query: 250 YEI---IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
Y++ I++++ + F R E + PL L+AM L+ A+ ++ +R +
Sbjct: 257 YDLPATIRELAEAG----FSTKRYEVWLQVELARPLFLIAMVLVGAAFTMRHARFGGTGL 312
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVA-AALIPVILTISLSILILLQKEDG 361
V + GF LY + + G++G +PVA A P + I L++ +LL EDG
Sbjct: 313 AVLMAVLLGFGLYFLRNFAQILGENG-QIPVALAGWAPPVAAILLTMGLLLHAEDG 367
>gi|260576762|ref|ZP_05844747.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
gi|259021014|gb|EEW24325.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
Length = 364
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/373 (22%), Positives = 161/373 (43%), Gaps = 37/373 (9%)
Query: 12 YYLKTTLYFLLG-----AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
Y + ++ LLG A IL+ + L++++ G+ S+ + +LAA +P + +I
Sbjct: 6 YIARRFVWLLLGIILGFATILLLIDSLDQLRRLSGQ--GISLGQATLLAAMNMPSSLYRI 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + ++ I +F L R+SELV+ RA G S + L V+ ++L G V V+NP+ +
Sbjct: 64 LPLLMILAAITLFMGLARSSELVVVRASGRSGLRFLATPVLAALLFGAVAVAVLNPLVAA 123
Query: 127 GEKIGIDLIQQWKDNGDKQKS--DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
K L+ ++ +G+ S D W++ P I A + + T ++
Sbjct: 124 TLKRYDTLLSKYAQDGESVLSINDDGLWLRQGGPDGQTVIHAARANADGTELFSVTFLSF 183
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID----------KNSTTLNIPIKM 234
D R +A A + + L + P++ + T L +
Sbjct: 184 DAAGLPSARTEAREARLGDGAWALVDAKTW-----PLNLANPEASAARETGTRLPSDLTR 238
Query: 235 DGFQKFSEQFASRSFYEI------IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
D + A+ S + + +++ FS +S H +T+ +++ AM
Sbjct: 239 DAIRDSFGTPAAISIWNLPSYIAGLERAGFSARS---HRVWLQTELALPLLL----AAMV 291
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
LIAA ++ +RS + V + GF ++ + + G++G + AA P +
Sbjct: 292 LIAAGFTMRPTRSGKTGTYVLLALLGGFGIFFLRNFAQVLGENGQIPIAMAAWSPPAAAV 351
Query: 349 SLSILILLQKEDG 361
++ +LL EDG
Sbjct: 352 LFAVGLLLHLEDG 364
>gi|294084201|ref|YP_003550959.1| permease YjgP/YjgQ [Candidatus Puniceispirillum marinum IMCC1322]
gi|292663774|gb|ADE38875.1| permease YjgP/YjgQ [Candidatus Puniceispirillum marinum IMCC1322]
Length = 368
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMG----ELPNYSISRGAVLAATR 58
G L+RYF YY + L L G +++ VI E+ Q ++ S+S VLA
Sbjct: 8 GTLFRYFAFYYTRWILLCLFGLTVIISVIQSVELMRQKSVNKSDVEEISVS---VLAMLN 64
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P II+ I+PF L+ ++ F N+++E V++R G SIW L+P +V ++ +G+ V+
Sbjct: 65 LPNIIEVILPFAVLIGTMLCFHAWNKSNEFVVTRGFGQSIWVSLSPVLVSALAIGVLFVM 124
Query: 119 VINPIATSGEK 129
VINPI K
Sbjct: 125 VINPIGAVTSK 135
>gi|126739400|ref|ZP_01755093.1| permease, YjgP/YjgQ family protein [Roseobacter sp. SK209-2-6]
gi|126719500|gb|EBA16209.1| permease, YjgP/YjgQ family protein [Roseobacter sp. SK209-2-6]
Length = 367
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 163/377 (43%), Gaps = 40/377 (10%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--RVPLIIQ 64
R F +++L T M LV +IDL+E Q+ + +S G +L T P +
Sbjct: 9 RRFAQWFLVITGVL----MTLVVLIDLSE---QIRRFDAFDLSAGQILGLTLLNAPAAMN 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ +P I ++ IV+F L R+SELV++RAIG S + L V+ + L+G+ V +NPI
Sbjct: 62 EFLPLIMILTTIVLFVGLARSSELVVTRAIGRSGIRALAAPVLVAALIGVLAVSTLNPIV 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIP--WMQISNP--QQDIFIGAKKILPENHIWEDFT 180
+ L ++ G S W++ +P Q + E I D T
Sbjct: 122 AATTNRYKSLSDSYRTGGPSVLSLTGEGLWLRQGSPSGQSVVHAAGYGGGREEIILYDVT 181
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLK---------------KVVEYQYGRIPIDKNS 225
+T K + R A A + L+ E+Q RIP
Sbjct: 182 ILTYGKDSGPRTRTQARSARLEGSDWVLQDAKVWPLSAWTNPEISAGEHQELRIP--TTL 239
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
T I ++D S+ + + I++++ + F + E + + P L+
Sbjct: 240 TQDRIRDRLDA----SDGISIYDLPQTIRELAEAG----FATKKHEVWYQVELARPFFLI 291
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA-AALIPV 344
AM L+ A+ ++ +R + V + GF LY I + G++G +PVA AA P
Sbjct: 292 AMVLVGAAFTMRHTRFGGTGMAVLTAVLLGFGLYFIRNFAQILGENG-EIPVALAAWAPP 350
Query: 345 ILTISLSILILLQKEDG 361
+ +I L++ +LL EDG
Sbjct: 351 VASILLTLGLLLHAEDG 367
>gi|99080789|ref|YP_612943.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
gi|99037069|gb|ABF63681.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
Length = 368
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/370 (23%), Positives = 160/370 (43%), Gaps = 23/370 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--RVPLIIQQ 65
Y+ + +L+ +F++ A +L+ ++ L ++ Q + G +L T P +
Sbjct: 6 YYARRFLQ---WFMVIAAVLMSLVMLIDLSEQFRRFDAQDLRFGQLLELTLLNAPAAFSE 62
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+P I ++ IV+F + R+SELV++RAIG S + L P VV +++LG V +NPI
Sbjct: 63 FLPLIMILTTIVLFVGMARSSELVVTRAIGRSGIRALVPPVVVALVLGGLAVSTLNPIVA 122
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIP---WMQIS--NPQQDIFIGAKKILPENHIWEDFT 180
+ L + ++ G + W++ N Q I + EN D +
Sbjct: 123 ATTNRFETLSESYRQTGGPAAVSLSGEGLWLRQGGQNGQSVIHAANYRGDAENLYLYDVS 182
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ--YGRIP--IDKNSTTLNIPIKMDG 236
+T R A A + D L+ +Q G P K L +P +
Sbjct: 183 ILTYAPDGGPTRRTVAAEARLEGDDWVLRDAKVWQLILGVNPERSAKRYDELRLPTTLTN 242
Query: 237 FQ-----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ ++E + + I+ +S + F R + + PL LVAM L+
Sbjct: 243 ERIRDTLGYAEGISIYDLPQTIQSLSEAG----FSTTRFQVWLQVELARPLFLVAMVLVG 298
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
A+ ++ +R + V + GF LY + + G++G + + AA P + +I L+
Sbjct: 299 AAFTMRHTRLGGTGVAVLTSVLLGFALYFVHNFARILGENGQIPILLAAWAPPVASILLT 358
Query: 352 ILILLQKEDG 361
+ +LL EDG
Sbjct: 359 MGLLLHAEDG 368
>gi|149914657|ref|ZP_01903187.1| permease, YjgP/YjgQ family protein [Roseobacter sp. AzwK-3b]
gi|149811450|gb|EDM71285.1| permease, YjgP/YjgQ family protein [Roseobacter sp. AzwK-3b]
Length = 363
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 92/371 (24%), Positives = 165/371 (44%), Gaps = 30/371 (8%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + +L T L +IL+F+ID I +M + P + S +A + P +I+
Sbjct: 6 YLARRFLLTFLAIFSVFVILLFLID---IVKEMQDFPAFPFSEILEIALLKAPSANYEIL 62
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGIS-IWQLLNPFVVGSILLGIFTVLVINPIATS 126
P I ++ + +F ++R SELV+ RA G S I L+ P VV L+G+ +V ++NPI +
Sbjct: 63 PLIVILATVALFLRMSRNSELVVVRASGRSAIRALVAPLVVAG-LIGVVSVTMLNPIVAA 121
Query: 127 GEKIGIDLIQQ---WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K DL+ W N + + W++ + I A++ + + T I
Sbjct: 122 SAKRHNDLMNSYLGWSINIMAIAPEGL-WLRQGSETGQTVIHAERASSDVSTLYNTTFIA 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKL--KKVVEYQYGRIPIDKNST-----TLNIPIKM-- 234
R A A + + + +L K+ + G I+ ST + ++P +
Sbjct: 181 FGLDGTPQRRITAASATLGDGEWRLADAKLWDLSSG---INPESTAQELDSYSVPSALTQ 237
Query: 235 ----DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
D F K E + + I ++ S S + +T+ + PL L+A+ +
Sbjct: 238 DRIIDSFGK-PEYISIWDLPKFIGQLEESGFSARRYAVWMQTE----LARPLFLIALVMA 292
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
AA+ ++ SR + + V I GF L+ I + G++G + + AA P + L
Sbjct: 293 AAAFTMRHSRLHNTGVSVLTAIMLGFGLHYIRNFAQILGENGQIPIMLAAWAPPVAAFLL 352
Query: 351 SILILLQKEDG 361
++ ILL E+G
Sbjct: 353 ALGILLHMEEG 363
>gi|167646491|ref|YP_001684154.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
gi|167348921|gb|ABZ71656.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
Length = 367
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 90/373 (24%), Positives = 152/373 (40%), Gaps = 36/373 (9%)
Query: 11 KYYLKTTLYFLLGAM----ILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+Y LK TL L A+ +LV +I +I +G L + P I +
Sbjct: 9 RYVLKKTLGSLAAALAVVSVLVMLIAFVDISKSVGTRAEVGFGELLFLTVLQAPATILLL 68
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG--------IFTVL 118
PFI L + F LNR SEL+ RA G+S W+ + P V + ++G T
Sbjct: 69 TPFIFLFGTLGAFVGLNRRSELIAMRAAGVSAWRFIMPAAVAAFVMGLLTLTLLNPLTAA 128
Query: 119 VINPIATSGEKIGIDLIQQ-----WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
+ TS + + ++ W GD K+ ++ I +D GA ++
Sbjct: 129 MSAQFETSRNAMMENYLKSAPKGLWLRQGD-DKTQVV----IRARARDQINGAVRL---R 180
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
+ ++ + + R +AD A + +L V G I S T +P
Sbjct: 181 GVSLFVYAVQPNGALQFSQRIEADEARLEPGFWQLSGVRVAMPGAGAI--RSETYTLPSN 238
Query: 234 MD---GFQKFS--EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+D ++FS + A E IK+ + S+I R + ++ PL+ AM+
Sbjct: 239 LDDRTASERFSNPQAIAVWRLPETIKRTEAAGFSSIPFRLRLQQ----VLATPLLFAAMS 294
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
++AA+ SL R + G+ GF + + + GK+ +L P AA P I+ +
Sbjct: 295 VLAAAFSLRLMRLGGLAGLAGAGVTLGFAFFFFNELCGALGKADVLTPAMAAWTPPIVAL 354
Query: 349 SLSILILLQKEDG 361
+ +L EDG
Sbjct: 355 LAGLTLLCYTEDG 367
>gi|260433487|ref|ZP_05787458.1| permease, YjgP/YjgQ family [Silicibacter lacuscaerulensis ITI-1157]
gi|260417315|gb|EEX10574.1| permease, YjgP/YjgQ family [Silicibacter lacuscaerulensis ITI-1157]
Length = 366
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 94/375 (25%), Positives = 160/375 (42%), Gaps = 27/375 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGA--MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RYF + +L++ + ++GA + L+ +IDL E + G+ + S + L P
Sbjct: 2 ILDRYFARRFLQS--FVVIGAIFLTLMILIDLIEQVRRFGD-ADLSFGQLLQLTLLNTPA 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I +++P + ++ I +F L R+SELV++RAIG S + L V ++ +G V ++N
Sbjct: 59 AISEMLPLLMILSTIALFVGLARSSELVVTRAIGRSGIRALAAPVALALGIGALAVALLN 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKS---DIIPWMQISNPQQDIFIGAKKILPENHIWED 178
PIA + + L Q+++ G S D + Q S Q + A + D
Sbjct: 119 PIAAATSEKYETLSDQYRNGGSSTLSLSRDGLWLRQGSKDGQSVIHAAGTENGDTLKLID 178
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP----IDKNSTTLNIPIKM 234
T IT + + A A + + + L+ V ++ R TL +P +
Sbjct: 179 VTIITFSPQGIPTRQIIAQSAELLDGQWLLRGVKDWSLSRAANPEFFSSEYDTLALPTTL 238
Query: 235 D--------GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
G Q + + + FS K + E + P LV+
Sbjct: 239 TRERILDRLGHQGLVSIYDLPQLIRDLAQAGFSTK-------QYEVWLQAQLARPFFLVS 291
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
M LI A+ ++ R I V + GF +Y + + G++G L + AA P
Sbjct: 292 MVLIGAAFTMRHVRFGGTGIAVLTAVLLGFAIYFVRNFAQILGENGQLPVMLAAWAPPFA 351
Query: 347 TISLSILILLQKEDG 361
I LS+ +LL EDG
Sbjct: 352 AILLSLGLLLHAEDG 366
>gi|254467255|ref|ZP_05080666.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
gi|206688163|gb|EDZ48645.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
Length = 367
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 149/345 (43%), Gaps = 32/345 (9%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y+ + +L+ L M LV +IDLNE Q + E + + L+ +P + + +
Sbjct: 6 YYARRFLQWFLVICAVLMTLVILIDLNE-QIRRFEGAGLGLPQLVGLSLLNIPAALSEFL 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P I ++ IV+F L R+SELV++RAIG S + L V+ + +G+ V ++NPIA +
Sbjct: 65 PLIMILTTIVLFVGLARSSELVVTRAIGRSGIRALAAPVLAAAGIGVLAVTMLNPIAAAT 124
Query: 128 EKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT----- 180
DL + + + G S W++ + I AK + D T
Sbjct: 125 ANRYQDLAETYHNGGPSALSLSGEGLWLRQGGARGQSVIHAKGYSGDA---ADITLHDVS 181
Query: 181 ----SITIDKKNKII---HRKDADLAIIYNDKV-KLKKVVEYQYGRIPIDKNSTTLNIPI 232
S +II R D I+ N K L + + G D+ L +P
Sbjct: 182 IHAYSTAGGPVRRIIAESARLDGSNWILTNAKSWPLTAGINPEAGAASHDE----LQLPT 237
Query: 233 KM--DGFQKFSEQFASRSFYEI---IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ D + + S Y++ I+++S + F R E ++ + PL L+AM
Sbjct: 238 TLTTDRIRDTLGTASGISIYDLPATIRELSAAG----FTTKRYEVRYQAELARPLFLIAM 293
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG 332
L+ AS ++ +R + V + GF LY I + G++G
Sbjct: 294 VLVGASFTMRHARFGGTGLAVLMAVLLGFGLYFIRNFAQILGENG 338
>gi|114569776|ref|YP_756456.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
gi|114340238|gb|ABI65518.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
Length = 365
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/367 (23%), Positives = 160/367 (43%), Gaps = 13/367 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G L RY L L ++ ++D E +G + S L R P +
Sbjct: 4 GRLNRYMASQTAGGLLLAFLTIATVIILVDFVEQSRAVGTRVDVSTLDLLGLTLLRAPAL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++ +PF+ L + F LNR+SEL++ RA GIS W++L +V ++ +GI +NP
Sbjct: 64 LESTLPFVFLFGTLTSLFRLNRSSELIVMRASGISAWRILTAPMVLAVGIGIIGATGLNP 123
Query: 123 IATS----GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+A + E L+ + G +Q W++ +N I A ++ + +
Sbjct: 124 LAATLNAEFEARRDSLMNVRRVEGAEQPV----WLRETNIDGFTVIAATQLEEARQVLRN 179
Query: 179 --FTSITIDKKN--KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
F D ++ R DA+ A + ++ +E +D + + I
Sbjct: 180 PVFLQFAEDASGTPRLERRIDAESAELRAGFWEVTGAIERTPTPSRLDLGAIAMPTSINR 239
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + +F+++ + ++ + ++ + R E + + L+ +PL L+A TLIAA+
Sbjct: 240 QALFERARSAEGVAFWDLPRLITSAREAGL-ATQRYELRLHALLALPLTLLASTLIAAAA 298
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+L R G +GF+++ ++ SFG SG L P AA LT L+++
Sbjct: 299 TLRLHRLGGAAAFAMAGGIAGFVMFFFQEMLSSFGVSGALPPATAAWSAPALTALLALIY 358
Query: 355 LLQKEDG 361
+ EDG
Sbjct: 359 IASTEDG 365
>gi|85859085|ref|YP_461287.1| permease [Syntrophus aciditrophicus SB]
gi|85722176|gb|ABC77119.1| permease [Syntrophus aciditrophicus SB]
Length = 359
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 157/346 (45%), Gaps = 26/346 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--RVPL 61
IL RY + +L+ L +L + L ++D E ++ L NYS + +LA R+P+
Sbjct: 3 ILDRYISREFLRFFLLVILSFLSLFLIVDFFE---KLKMLINYSATFYQILAFFFFRIPM 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL--- 118
++ IP L+ +++ F +L++ SE+V RA G+S+++ P ++ S L+ +FT +
Sbjct: 60 MLSLTIPAAVLLSSLLTFGSLSKNSEIVAMRASGVSLYRSSIPILLISFLIALFTFVFSE 119
Query: 119 VINPIATS-GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+I P A E I I++ + G ++ I W + + + K PE++
Sbjct: 120 LITPYANEKAEYIRKVEIEKKEIQGIFKQEQI--WYRGTRGIYNF----KLFDPEHNTLR 173
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKK--VVEYQYGRIPIDK--NSTTLNIPIK 233
T +D+K +I R DA+ A+ ++ +V + P+ + L+ P
Sbjct: 174 GITLNYMDRKMNLIMRVDAERAVWDRNQWVFYNLLIVRFDSAGFPVMERYGEKILDFPET 233
Query: 234 MDGF---QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
F QK SEQ + ++K+ ++ + R + I P + V + +I
Sbjct: 234 PSDFRVIQKDSEQMGYFELRKYVQKI----RTEGYDATRYLADLHGKIAFPFVCVLLAVI 289
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
S SL+ RS + G+ GF + + S G+SG L P
Sbjct: 290 GISFSLKTERSGGLAGSIFAGLIIGFSYWILFAFSMSLGRSGTLPP 335
>gi|51473938|ref|YP_067695.1| hypothetical protein RT0756 [Rickettsia typhi str. Wilmington]
gi|51460250|gb|AAU04213.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
Length = 362
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 151/314 (48%), Gaps = 22/314 (7%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P ++ Q+ I+ + NL +++EL+ + GI IWQ+L + +++LGI
Sbjct: 59 KIPYLLTQVSSLISFTSMLFFLRNLTKSNELIAILSSGIHIWQVLIIPCIVTLILGIICT 118
Query: 118 LVINPIATSG-EKIGI---DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
++NPI+T G +K I L ++ G +S ++ + ++ Q I + I
Sbjct: 119 TLLNPISTIGLQKYAILEAKLTKKALSGGLISESGLLFFESLNEHNQ--IIQTQFIDVAE 176
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKV------VEYQYGRIPIDKNSTT 227
+ T + ID N + R DA II N K+ L +V Y + I N
Sbjct: 177 QKLNNITILFIDNNNSFLKRIDALYGIIKNKKLYLNRVKVSMKDETKSYNNLTIQTN--- 233
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
L+I ++ F + E + + ++I ++ S S I NY + +Y + P+M++A
Sbjct: 234 LSINSLVNKFMR-PEMVSIWALPKLINELLNSGLSAI--NY--QIYYYKQLFKPIMMMAT 288
Query: 288 TLIAAS-VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
++A+ +SL+ R N I+ G+FSGF+ Y++ I+ L +AA L+P +L
Sbjct: 289 VILASCFISLK-QRCNAQEKILILGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSLL 347
Query: 347 TISLSILILLQKED 360
+S I+L ++
Sbjct: 348 IFFISNFIILHYKE 361
>gi|157804140|ref|YP_001492689.1| hypothetical protein A1E_04940 [Rickettsia canadensis str. McKiel]
gi|157785403|gb|ABV73904.1| hypothetical protein A1E_04940 [Rickettsia canadensis str. McKiel]
Length = 333
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 153/315 (48%), Gaps = 24/315 (7%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P ++ Q+ I+ + NL + +EL + + G+ IWQ+L + +++LGI
Sbjct: 30 KIPYLLGQVSSLISFTAMLFFLSNLTKNNELTVILSSGVHIWQVLVSPCIVTLILGIVFT 89
Query: 118 LVINPIATSG----EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI---FIG-AKKI 169
++NPI T G E + L ++ +G KS ++ + +++ Q I FI A+K
Sbjct: 90 TILNPIGTIGLQKYELLEAKLTKKALSDGIISKSGLLFFESLNDANQIIQTQFINVAEKK 149
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
L + T + +D N + R DA II N + L +V + N+ T+
Sbjct: 150 L------NNITVLFVDSNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETK-AYNTLTIQ 202
Query: 230 IPIKMDGF-QKFS--EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+ ++ KFS + + + ++I ++ S I NY + +Y + P+M++A
Sbjct: 203 TNLSINSLVNKFSRPDMVSIWALPKLINELLNSGLPAI--NY--QIYYYKQLFKPIMMMA 258
Query: 287 MTLIAAS-VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++A+ +SL+ R+N I+ G+FSGF+ Y++ I+ L +AA L+P +
Sbjct: 259 TVILASCFISLK-QRNNSQEKILILGLFSGFIAYSLSEILLKILAYNNLSLIAAILLPSM 317
Query: 346 LTISLSILILLQKED 360
L +S I+L ++
Sbjct: 318 LIFFISNFIILHYKE 332
>gi|294678215|ref|YP_003578830.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
gi|294477035|gb|ADE86423.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
Length = 366
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 122/269 (45%), Gaps = 22/269 (8%)
Query: 47 SISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFV 106
++S A LAA VP + I P + ++ +V F L R+SELV+ RA G S ++L V
Sbjct: 44 ALSDAAHLAALSVPSTLYTIFPLVVMLSGVVAFLGLARSSELVVIRAAGRSALRMLLAPV 103
Query: 107 VGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIP---WMQISNPQQDIF 163
++L+G+ V V NPI ++ K ++ Q + G +Q I WM +Q
Sbjct: 104 TVALLIGVLLVAVGNPIVSATSKRAEEIEGQLRAEG-RQTVSIGREGLWM-----RQGTA 157
Query: 164 IGAKKILPENHIWEDFTS------ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG 217
G + ++ D T+ + D K + R DA A + L + ++ G
Sbjct: 158 DGGQAVIHAMRGNADATALYQVTFLLFDAKAGPVRRIDAASAWLTPGAWVLSEAKDWPLG 217
Query: 218 R-IPIDKNST---TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSF--SNKSNIFHNYRAE 271
R ++++T T+++P + + ++ F + S I + F + ++ F R
Sbjct: 218 RSTNPERDATRAQTISLPSTLTA-ESIADSFGAPSAMPIWELPGFIRALEAAGFSARRHI 276
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ PLML AM L+AA ++ +R
Sbjct: 277 VWLQVELAQPLMLAAMVLVAAGFTMRPAR 305
>gi|308272620|emb|CBX29224.1| hypothetical protein N47_J02050 [uncultured Desulfobacterium sp.]
Length = 356
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 142/327 (43%), Gaps = 51/327 (15%)
Query: 57 TRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP-FVVGSILLG-- 113
+++P I Q IP L+ +V F +++ +E+V ++ GISI+ LL P ++GS+
Sbjct: 57 SKMP--IAQFIPLSVLLSILVTFGLMSKNNEIVAIKSGGISIYHLLRPILLIGSVFFCVV 114
Query: 114 IFTVLVINPIATS-GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE 172
IF + PI S EKI L Q +++K ++ ++DI+I ++
Sbjct: 115 IFLSEAVVPITKSKAEKI---LTQ-----ANRKK------FAMALKEKDIWIKGHNLI-- 158
Query: 173 NHI-WEDFTSITI--------DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
HI + D + TI D K +++ R D + + L ++E + +DK
Sbjct: 159 THIEYYDSSKKTIHGIKLYFFDDKFRVVRRIDCEKGVFNQGNWILYDIIEQK-----LDK 213
Query: 224 NSTTLNI-----------PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET 272
N++ ++ P + SE ++ Y+ IKK+ +S + T
Sbjct: 214 NNSEISFHKQLIEHLVFSPDDIGVVAVTSESMSAFELYDYIKKI----ESEGYDATTYRT 269
Query: 273 QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG 332
FY + P + + M + ++ + + YGI + F + S G+ G
Sbjct: 270 DFYAKLSFPFICIIMCFVGTGIAFRLGAKESLPVNIVYGIGAAFSYWVFFGFCISLGEGG 329
Query: 333 ILLPVAAALIPVILTISLSILILLQKE 359
IL P AALIP ++ + I +L E
Sbjct: 330 ILNPFFAALIPNLVFLGFGIFTVLNTE 356
>gi|229587132|ref|YP_002845633.1| Putative permease [Rickettsia africae ESF-5]
gi|228022182|gb|ACP53890.1| Putative permease [Rickettsia africae ESF-5]
Length = 362
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 149/315 (47%), Gaps = 24/315 (7%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P ++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI
Sbjct: 59 KIPYLLGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFT 118
Query: 118 LVINPIATSG----EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI---FIG-AKKI 169
++NPI T G E + L ++ G KS ++ + +++ Q I FI A+K
Sbjct: 119 TILNPIGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDETQIIQTQFINVAEKK 178
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---ST 226
L + T + +D N + R DA II N + L +V + N T
Sbjct: 179 L------NNITILFVDHNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETKAYNNLTMQT 232
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
L+I ++ F + E + + ++I ++ S I NY + +Y + P+M++A
Sbjct: 233 NLSINSLVNKFIR-PEMVSIWALPKLIHELLNSGLPAI--NY--QIYYYKQLFKPIMMMA 287
Query: 287 MTLIAAS-VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++A+ +SL+ R N I+ G+FSGF+ Y++ I+ L +AA L+P +
Sbjct: 288 TVILASCFISLK-QRDNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSM 346
Query: 346 LTISLSILILLQKED 360
L +S I+L ++
Sbjct: 347 LIFFISNFIMLHYKE 361
>gi|15893122|ref|NP_360836.1| hypothetical protein RC1199 [Rickettsia conorii str. Malish 7]
gi|238650591|ref|YP_002916443.1| hypothetical protein RPR_03025 [Rickettsia peacockii str. Rustic]
gi|15620329|gb|AAL03737.1| unknown [Rickettsia conorii str. Malish 7]
gi|238624689|gb|ACR47395.1| hypothetical protein RPR_03025 [Rickettsia peacockii str. Rustic]
Length = 362
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 149/315 (47%), Gaps = 24/315 (7%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P ++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI
Sbjct: 59 KIPYLLGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFT 118
Query: 118 LVINPIATSG----EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI---FIG-AKKI 169
++NPI T G E + L ++ G KS ++ + +++ Q I FI A+K
Sbjct: 119 TILNPIGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDETQIIQTQFINVAEKK 178
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---ST 226
L + T + +D N + R DA II N + L +V + N T
Sbjct: 179 L------NNITILFVDHNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETKAYNNLTMQT 232
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
L+I ++ F + E + + ++I ++ S I NY + +Y + P+M++A
Sbjct: 233 NLSINSLVNKFIR-PEMVSIWALPKLINELLNSGLPAI--NY--QIYYYKQLFKPIMMMA 287
Query: 287 MTLIAAS-VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++A+ +SL+ R N I+ G+FSGF+ Y++ I+ L +AA L+P +
Sbjct: 288 TVILASCFISLK-QRDNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSM 346
Query: 346 LTISLSILILLQKED 360
L +S I+L ++
Sbjct: 347 LIFFISNFIMLHYKE 361
>gi|157829030|ref|YP_001495272.1| hypothetical protein A1G_06555 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933754|ref|YP_001650543.1| hypothetical protein RrIowa_1403 [Rickettsia rickettsii str. Iowa]
gi|157801511|gb|ABV76764.1| hypothetical protein A1G_06555 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908841|gb|ABY73137.1| hypothetical membrane spanning protein [Rickettsia rickettsii str.
Iowa]
Length = 362
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 150/315 (47%), Gaps = 24/315 (7%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P ++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI
Sbjct: 59 KIPYLLGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFT 118
Query: 118 LVINPIATSG----EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI---FIG-AKKI 169
++NPI+T G E + L ++ G KS ++ + +++ Q I FI A+K
Sbjct: 119 TILNPISTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDETQIIQTQFINVAEKK 178
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---ST 226
L + T + +D N + R DA II N + L +V + N T
Sbjct: 179 L------NNITILFVDHNNSFLKRIDALYGIIENKMLHLSRVKVFTKEETKAYNNLTMQT 232
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
L+I ++ F + E + + ++I ++ S I NY + +Y + P+M++A
Sbjct: 233 NLSINSLVNKFIR-PEMVSIWALPKLINELLNSGLPAI--NY--QIYYYKQLFKPIMMMA 287
Query: 287 MTLIAAS-VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++A+ +SL+ R N I+ G+FSGF+ Y++ I+ L +AA L+P +
Sbjct: 288 TVILASCFISLK-QRDNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSM 346
Query: 346 LTISLSILILLQKED 360
L +S I+L ++
Sbjct: 347 LIFFISNFIMLHYKE 361
>gi|34581207|ref|ZP_00142687.1| hypothetical protein [Rickettsia sibirica 246]
gi|28262592|gb|EAA26096.1| unknown [Rickettsia sibirica 246]
Length = 362
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 149/315 (47%), Gaps = 24/315 (7%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P ++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI
Sbjct: 59 KIPYLLGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFT 118
Query: 118 LVINPIATSG----EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI---FIG-AKKI 169
++NPI T G E + L ++ G KS ++ + +++ Q I FI A+K
Sbjct: 119 TILNPIGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDKTQIIQTQFINVAEKK 178
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---ST 226
L + T + +D N + R DA II N + L +V + N T
Sbjct: 179 L------NNITILFVDHNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETKAYNNLTMQT 232
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
L+I ++ F + E + + ++I ++ S I NY + +Y + P+M++A
Sbjct: 233 NLSINSLVNKFIR-PEMVSIWALPKLINELLNSGLPAI--NY--QIYYYKQLFKPIMMMA 287
Query: 287 MTLIAAS-VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++A+ +SL+ R N I+ G+FSGF+ Y++ I+ L +AA L+P +
Sbjct: 288 TVILASCFISLK-QRDNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSM 346
Query: 346 LTISLSILILLQKED 360
L +S I+L ++
Sbjct: 347 LIFFISNFIMLHYKE 361
>gi|325295269|ref|YP_004281783.1| permease YjgP/YjgQ family protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065717|gb|ADY73724.1| permease YjgP/YjgQ family protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 354
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/358 (22%), Positives = 156/358 (43%), Gaps = 16/358 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY F L+ + LL M+L VID ++M I+ G + R+PL ++
Sbjct: 7 RYVFIETLRYFVLTLLTFMVLFIVIDF---VSKMDTFLKSGIADGFLYVIYRLPLYTVRV 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP TL+ +V N + ++EL + +A+GIS+++ P + + L I + L+ +
Sbjct: 64 IPIATLIATMVTLSNFSFSNELTVVKALGISVYRFSFPIIFLAFLASILSFLIGELVVPK 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ + + K+N + S W + + F+ + + P + + + K
Sbjct: 124 SISLSKSIYYKVKENKNFHVSGKSIWFK---KDEKTFVFMEYVNPAKSEAKRISIFFLGK 180
Query: 187 KNKIIHRKDADLAI-IYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGF---QKFS 241
+ R DA I I +D KLK E + + K + +N+ I Q +
Sbjct: 181 EFSPTKRIDALYGINIKDDIWKLKNCFERKLKELKTTKISEKEINLGIGKKDLIFTQIET 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
E +S Y++IK++ K + Y + I L+ + + +I + + R+
Sbjct: 241 ETMSSFLLYKVIKQL----KRAGYDTTGYLVDLYSKLAISLLPLVVAVIGIPLGVFNPRN 296
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ +V FM T I+ S GKSG+L P +A P ++ +S+ +L+L + +
Sbjct: 297 KKGYTLVIAAALIVFMWIT-ISFFSSLGKSGVLPPFYSAFAPEVMFLSIGLLLLARMD 353
>gi|209964086|ref|YP_002297001.1| predicted permease YjgP [Rhodospirillum centenum SW]
gi|209957552|gb|ACI98188.1| predicted permease YjgP [Rhodospirillum centenum SW]
Length = 359
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/338 (19%), Positives = 142/338 (42%), Gaps = 34/338 (10%)
Query: 35 EIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAI 94
E +G+L Y++ R+P I+++++P LV ++ + L + +E+V R+
Sbjct: 42 ERGGALGDLGTYAL--------LRLPSIVERLVPLAVLVGSLTTLYGLVQNNEIVAMRSA 93
Query: 95 GISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIP--- 151
G++ +QLL + ++ + +F +++ + IA E+ + W + + D +P
Sbjct: 94 GLTPYQLLATLMPAAVAIAVFHLILSDQIAPRAERA---FLTWWAET-EPPTDDDLPLAE 149
Query: 152 ---WMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYN----- 203
W+++ N + A+++L E + D + ++ R A A+ +
Sbjct: 150 KKLWLRVGN----TIVAAERVLERGARLEQVSLYPRDDQGRVTERTRAAAAVYGDGNWTL 205
Query: 204 -DKVKLKKVVEYQYGRIPIDKNSTTLNI-PIKMDGFQKFSEQFASRSFYEIIKKMSFSNK 261
D +L + + P + + + P + + +E I++ +
Sbjct: 206 LDGTRL-DLTRGDFKAEPFARAPWPVRLHPANVVEVLQPTENIPLLRLRSILRGDWAGRQ 264
Query: 262 SNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTI 321
S ++ ET+ + PL + M L+AA V+ RS +A GI G
Sbjct: 265 SPAYY----ETRLHETYAGPLATLIMVLLAAPVAHGMRRSGAVGGSMALGIGIGLTYLLA 320
Query: 322 ITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
++ + G++G + V AA P + ++ IL+ E
Sbjct: 321 DGMLAALGEAGAMPAVIAAWAPTVFFAAVGGAILVHVE 358
>gi|15604603|ref|NP_221121.1| hypothetical protein RP769 [Rickettsia prowazekii str. Madrid E]
gi|3861298|emb|CAA15197.1| unknown [Rickettsia prowazekii]
gi|292572419|gb|ADE30334.1| Putative permease [Rickettsia prowazekii Rp22]
Length = 362
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 147/311 (47%), Gaps = 16/311 (5%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P ++ Q+ I+ + NL +++EL + GI IWQ+L + +++LGI
Sbjct: 59 KIPYLLSQVSSLISFTSMLFFLRNLTKSNELTAILSSGIHIWQVLIIPCIVTLILGIICT 118
Query: 118 LVINPIATSGEK----IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
++NPI+T G + + L ++ +S ++ + ++ Q I K I
Sbjct: 119 TILNPISTIGLQKYSLLEAKLTKKALSECLISESGLLFFESLNEHNQ--IIQTKFIDVAE 176
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNI 230
+ T + ID N + R DA II N K+ L +V I N T L+I
Sbjct: 177 KKLNNITILFIDNNNSFLKRIDALYGIIDNKKLYLNRVKVSTKDEIKSYSNLTIQTNLSI 236
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
++ F + E + + ++I ++ S S I NY + +Y + P+M++A ++
Sbjct: 237 NSLVNKFMR-PEMVSIWALPKLINELLNSGLSAI--NY--QIYYYKQLFKPIMMMATVIL 291
Query: 291 AAS-VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
A+ +SL+ R N I+ G+FSGF+ Y++ I+ L +AA L+P +L
Sbjct: 292 ASCFISLK-QRCNSQEKILILGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFF 350
Query: 350 LSILILLQKED 360
+S I+L ++
Sbjct: 351 ISNFIILHYKE 361
>gi|67459625|ref|YP_247249.1| permease [Rickettsia felis URRWXCal2]
gi|67005158|gb|AAY62084.1| Predicted permeases [Rickettsia felis URRWXCal2]
Length = 362
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 148/315 (46%), Gaps = 24/315 (7%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P ++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI
Sbjct: 59 KIPYLLGQVSSLISFTSMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLILGIVFT 118
Query: 118 LVINPIATSG----EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI---FIG-AKKI 169
++NPI T G E + L ++ G KS ++ + + + Q I FI A+K
Sbjct: 119 TILNPIGTIGLQKYELLEAKLTKKTLSEGIISKSGLLFFESLKDENQIIQTQFINIAEKK 178
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---ST 226
L + T + +D N + R DA II N + L +V + N T
Sbjct: 179 L------NNITILFVDSNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETKTYNNLTIQT 232
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
L+I ++ F + E + + ++I ++ S I NY + +Y + P+M++A
Sbjct: 233 NLSINSLVNKFIR-PEMVSIWALPKLINELLNSGLPAI--NY--QIYYYKQLFKPIMMMA 287
Query: 287 MTLIAAS-VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++A+ +SL+ R N I+ G+FSGF+ Y++ I+ L +AA L+P +
Sbjct: 288 TVILASCFISLK-QRDNSQEKILILGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSM 346
Query: 346 LTISLSILILLQKED 360
L +S I+L ++
Sbjct: 347 LIFFISNFIILHYKE 361
>gi|83952307|ref|ZP_00961039.1| permease, YjgP/YjgQ family protein [Roseovarius nubinhibens ISM]
gi|83837313|gb|EAP76610.1| permease, YjgP/YjgQ family protein [Roseovarius nubinhibens ISM]
Length = 363
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 84/368 (22%), Positives = 154/368 (41%), Gaps = 16/368 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + +L T + +L+ +IDL + +LP + + +L +P
Sbjct: 2 ILHFYFARKFLWTLIGIATVFSVLLGLIDLVDELQDFPDLPFFDVLEIVLL---NLPHAN 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ + +F L R+SELV+ RA G S L V + L+G+ V + NP+
Sbjct: 59 YEILPLVMILATVALFVRLARSSELVVLRASGRSALAGLAGPVAVAALVGLVGVTMFNPV 118
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K DL+ GD S W++ + I AK P+ T
Sbjct: 119 VAASAKRYNDLVNGHSGLGDNVLAISSEGLWLRQGTEEGQTVIHAKSATPDLSTLFGATF 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST------TLNIPIKMD 235
+ + + R A+ A + + L V + + S T+ + D
Sbjct: 179 TSFTPEGDPMRRLTAESAELGQGQWHLSDVKIWDLANTDNPEASARTQDRLTIRAALTRD 238
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNK--SNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + F + I +F ++ + F R F + PL L+A+ L+ A+
Sbjct: 239 ---RIIDSFGKPEYIPIWDLPAFIDQLETAGFSARRYAVWFQMELAQPLFLIALVLVGAA 295
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+++ +R V + GF L+ I + G++G + + AA P + ++ L++
Sbjct: 296 FTMKHARLANTGTSVLAAVMLGFTLHYIRNFAQVLGENGQIPILLAAWAPPVASLLLALG 355
Query: 354 ILLQKEDG 361
ILL EDG
Sbjct: 356 ILLHMEDG 363
>gi|114768925|ref|ZP_01446551.1| permease, YjgP/YjgQ family protein [alpha proteobacterium HTCC2255]
gi|114549842|gb|EAU52723.1| permease, YjgP/YjgQ family protein [alpha proteobacterium HTCC2255]
Length = 366
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 142/324 (43%), Gaps = 22/324 (6%)
Query: 53 VLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
+L+ R + +P I ++ + +L+R++E ++ RA G+S + L P + + L
Sbjct: 50 ILSLLRTTTYLSLAMPLIIMLSALAFSVSLSRSNEFIVLRASGVSALKGLFPVISSAFFL 109
Query: 113 GIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIP----WMQISNPQQDIFIGAKK 168
G+ ++ +++P+A G+ IG I+ K +Q +I WM+ + I A
Sbjct: 110 GLISIFMLDPLA--GKMIGYYNIKLDKLRSKEQSQVLINDNGYWMRQATLNGHQIIKAVN 167
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI---PIDKNS 225
+ T D+ + R ++ A + N+++ L +++ +I PI N
Sbjct: 168 VSNNGQRLHQVTIFNYDENGLVTERFFSESAALGNNELLLTNAIKWSDTKIKKNPIIANE 227
Query: 226 TTLNIPIK--------MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ IK +DG+ E + + + I+K+ S S + + + Q+
Sbjct: 228 KIKKLKIKTEITPTQLLDGYAS-PETISPWNMNKQIQKVKSSGFSVLKYQSKKMEQY--- 283
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
P + + M ++ +L+ SR+ I V + SGF L+ + G+SG + +
Sbjct: 284 -ARPFLFIVMVVLGTVFTLQNSRARNVGISVVLAVASGFFLHFFQNFCTTLGRSGEIPLI 342
Query: 338 AAALIPVILTISLSILILLQKEDG 361
A P++ +++ + L EDG
Sbjct: 343 IATWSPILSIGLIAMTLFLHYEDG 366
>gi|157826222|ref|YP_001493942.1| hypothetical protein A1C_06005 [Rickettsia akari str. Hartford]
gi|157800180|gb|ABV75434.1| hypothetical protein A1C_06005 [Rickettsia akari str. Hartford]
Length = 362
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 146/315 (46%), Gaps = 24/315 (7%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P ++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI
Sbjct: 59 KIPYLLGQVCSLISFTAMLFFLSNLTKNNELTAMLSSGIHIWQVLVIPCIVTLILGIVFT 118
Query: 118 LVINPIATSG----EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI---FIG-AKKI 169
++NPI T G E + L ++ G KS ++ + ++ Q I FI A+K
Sbjct: 119 TILNPIGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNGENQIIQTQFINVAEKK 178
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---ST 226
L + T + +D N + R DA II N + LK+V N T
Sbjct: 179 L------NNITILFVDSNNSFLKRIDALYGIIENKMLHLKRVKVCTKEETKAYNNLTIQT 232
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
L+I ++ F + E + S ++I ++ S I NY + +Y + P+M++A
Sbjct: 233 NLSINSLVNKFIR-PEMVSIWSLPKLINELFNSGLPAI--NY--QIYYYKQLFKPIMMMA 287
Query: 287 MTLIAAS-VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++A+ +SL+ R N I+ G+F GF+ Y++ I+ L AA L+P +
Sbjct: 288 TVILASCFISLK-QRDNSQEKILILGLFLGFIAYSLSEILLKILTYNNLSLTAAILLPSM 346
Query: 346 LTISLSILILLQKED 360
L +S I+L ++
Sbjct: 347 LIFFISNFIILHYKE 361
>gi|157964920|ref|YP_001499744.1| putative permease [Rickettsia massiliae MTU5]
gi|157844696|gb|ABV85197.1| Putative permease [Rickettsia massiliae MTU5]
Length = 370
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 148/315 (46%), Gaps = 24/315 (7%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P ++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI
Sbjct: 67 KIPYLLGQVSSLISFSAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFT 126
Query: 118 LVINPIATSG----EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI---FIG-AKKI 169
++NPI T G E + L ++ G KS ++ + +++ Q I FI A+K
Sbjct: 127 TILNPIGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFEALNDENQIIQTQFINVAEKK 186
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---ST 226
L + T + +D N + R DA II N + L +V + N T
Sbjct: 187 L------NNITILFVDHNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETKAYNNLTIQT 240
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
L+I ++ F + E + ++I ++ S I NY + +Y + P+M++A
Sbjct: 241 NLSINSLVNKFIR-PEMVSIWVLPKLINELLNSGLPVI--NY--QIYYYKQLFKPIMMMA 295
Query: 287 MTLIAAS-VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++A+ +SL+ R N I+ G+FSGF+ Y++ I+ L +AA L+P +
Sbjct: 296 TVILASCFISLK-QRDNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSM 354
Query: 346 LTISLSILILLQKED 360
L +S I+L ++
Sbjct: 355 LIFFISNFIMLHYKE 369
>gi|218778208|ref|YP_002429526.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
AK-01]
gi|218759592|gb|ACL02058.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
AK-01]
Length = 353
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 122/293 (41%), Gaps = 24/293 (8%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF----VVGSILLG 113
R+P + Q++P L+ +VV + R +E++ + G S + LL P V+ S+ L
Sbjct: 56 RIPYVAAQVLPVGVLLSAMVVIGLMARHNEIIAYASGGGSSFSLLKPIAVMGVIASLFLF 115
Query: 114 IFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG-AKKILPE 172
F +++ A +I +++ D G + W ++ IG K +PE
Sbjct: 116 AFNEIIVPAAAAEANQIWYQDVRKEGDVGTRT-----TWF-----HRNGLIGRVDKYIPE 165
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
H D T D K+I R DAD A I L+ +E GR + L + +
Sbjct: 166 THTARDITLNYYDPSFKLIKRIDADDATISGTVWTLRNAMESVSGRASDIRQHKELKVEM 225
Query: 233 KMDGFQ-----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
Q K S++ + E I K+ +S + R I PL+ + M
Sbjct: 226 DFTADQLHDRVKRSDEMSLVQLKEHIHKI----ESEGYKAVRFRVDLASKISFPLVCLIM 281
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+++ +++L R + + G+ F + + ++ S G +G+ P+ +A
Sbjct: 282 SVLGGAMALRGKRGEGLAVNIVMGMGLAFAYWVVHSLCLSLGYAGMYSPIFSA 334
>gi|239946701|ref|ZP_04698454.1| permease, YjgP/YjgQ family [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239920977|gb|EER21001.1| permease, YjgP/YjgQ family [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 362
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 151/318 (47%), Gaps = 30/318 (9%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P ++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI +
Sbjct: 59 KIPYLLGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLILGIVFM 118
Query: 118 LVINPIATSG----EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI---FIG-AKKI 169
++NPI T G E + L ++ G KS ++ + +++ Q I FI A+K
Sbjct: 119 TILNPIGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDENQIIQTQFINVAEKK 178
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDK 223
L + T + +D N + R DA II N + L +V + Y + I
Sbjct: 179 L------NNITILFVDSNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETKAYNNLTIQA 232
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
N L+I ++ F + E + + ++I ++ S I NY + +Y + P+M
Sbjct: 233 N---LSINSLVNKFIR-PEMVSIWALPKLINELLNSGLPAI--NY--QIYYYKQLFKPIM 284
Query: 284 LVAMTLIAAS-VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
++A ++A+ +SL+ R N I+ G+FSGF+ Y++ I+ L + A L+
Sbjct: 285 MMATVILASCFISLK-QRDNSQEKILILGLFSGFIAYSLSEILLKILTYNNLSLITAILL 343
Query: 343 PVILTISLSILILLQKED 360
P +L +S I+L ++
Sbjct: 344 PSMLIFFISNFIILHYKE 361
>gi|149201834|ref|ZP_01878808.1| permease, YjgP/YjgQ family protein [Roseovarius sp. TM1035]
gi|149144882|gb|EDM32911.1| permease, YjgP/YjgQ family protein [Roseovarius sp. TM1035]
Length = 378
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/366 (19%), Positives = 155/366 (42%), Gaps = 12/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + + + + + ++++ +IDL +++G+ P + + + ++P
Sbjct: 17 ILERYFGRRFFVSFMGVTITMLVIMGLIDL---MDELGDFPELAFGQVLGIVLLKLPEAY 73
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IIP + ++ ++ +F L R+SE+V+ RA G S + L ++ +G+ + V NP+
Sbjct: 74 YEIIPLVMILASVALFLRLARSSEMVVLRASGRSALRGLLAPAAVALAIGLLGLAVGNPL 133
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K DL+ + D + W++ I A + + +
Sbjct: 134 VAATAKRHHDLVNTYSGQTYSDLAIASEGLWLRQGGTAGQTVIYAARSSSDLSTLYGPSF 193
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR----IPIDKNSTTLNIPIKMDGF 237
+ + R A A + L+ + + + L++P +
Sbjct: 194 YDFAPDGQPLRRISASTARLETGAWLLEDAKIWDLAENINPEAMARQEAQLSVPSDLTQ- 252
Query: 238 QKFSEQFASRSFYEIIKKMSFSNK--SNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + F S + I + F ++ F R F + P+ LVA+ LI+A+++
Sbjct: 253 DRILDSFGSPEYIPIWELPKFIDQLEEAGFSARRYAIWFQSELAQPVFLVALVLISAALT 312
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + V + GF L+ + G++G L + AA P + ++ + + IL
Sbjct: 313 MGHTRGANVGLSVLTAVLLGFGLHYVRNFAHILGENGQLPILLAAWAPPVASLFIGLGIL 372
Query: 356 LQKEDG 361
L EDG
Sbjct: 373 LHLEDG 378
>gi|254436833|ref|ZP_05050327.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
307]
gi|198252279|gb|EDY76593.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
307]
Length = 364
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 90/374 (24%), Positives = 158/374 (42%), Gaps = 27/374 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + + T G +L+ +IDL E + G S+ L+ ++P ++
Sbjct: 2 ILHRYFARRFAWTFTATFGGFFVLMLLIDLVEQLRRYG--GEASLGDMLQLSLLKLPSLL 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS-IWQLLNPFVVGSILLGIFTVLVINP 122
I+P I ++ + F L R+SEL++SRA G S + L+ P +V ++++G T+ V NP
Sbjct: 60 YDILPLIMVLATVATFLGLARSSELIVSRAAGRSALRALVAPLIV-TVIIGAITIGVFNP 118
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIP---------WMQISNPQQDIFIGAKKILPEN 173
+ + K +++ +SD W++ + I A +
Sbjct: 119 LVAATSK-------EFEARKTTLRSDAPSVLAISENGLWLRQGDDNSQTVIRAGGANLDG 171
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKL--KKVVEYQYGRIP--IDKNSTTLN 229
+D T I K R +A A + L KV R+ + TTL
Sbjct: 172 TQLQDVTFIRFSKTGHPTRRIEAATANLTIGAWDLTDAKVWPLVGNRVAESVATIHTTLR 231
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI--FHNYRAETQFYFLIVIPLMLVAM 287
IP + + + F S I + +F ++ + F R + + P L+AM
Sbjct: 232 IPSTLTA-DEIRDSFGVPSSIAIWELPAFIDRLEVAGFSATRHQVWLQMELAQPAFLLAM 290
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
LI A ++ R + ++V I F L+ + + G++G + AA P +
Sbjct: 291 VLIGAGFTMRHQRGGRTGVMVLAAILICFALFFLRNFAQILGENGQISAGLAAWAPPLAA 350
Query: 348 ISLSILILLQKEDG 361
I+ S+ +LL EDG
Sbjct: 351 IAGSLGLLLHLEDG 364
>gi|295690098|ref|YP_003593791.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
gi|295432001|gb|ADG11173.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
Length = 353
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/343 (21%), Positives = 143/343 (41%), Gaps = 31/343 (9%)
Query: 12 YYLKTTLYFLLGA-MILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIP 68
Y L+T +LGA +IL+ ++ + ++ + ++ + + V AA R+P + +Q+ P
Sbjct: 6 YVLRTVATRILGAALILMSILQILDLLDVTTDILDRGLGMAGVAYYAALRLPRLFEQVAP 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN---PFVVGSILLGIFTVLVINPIAT 125
L + F L R S +V RA GIS ++++ P V+ +LL V+ P +
Sbjct: 66 IAVLAGGLFAFSQLARESAVVAMRASGISGYRIVGMAMPAVIAVMLLDALCGQVLAPRSD 125
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ W N P + D+ IGA I TS+TI
Sbjct: 126 P-------TLADWWRNTTPVAERKAPSPRTFRAGSDLVIGADASADGREI----TSLTIF 174
Query: 186 KKNK---IIHRKDADLAIIYNDKVKLKKVVEYQY-GRIPIDKNSTTLNIPIKMDGFQKFS 241
++N ++ + +A A+ + L+ ++ G + + ++N P + Q
Sbjct: 175 RRNAKGILVEKVEASKALYDGRRWTLQSPKTTRFAGDLAQTSTAASINWPTALRP-QDVQ 233
Query: 242 EQFASRSFYEIIK-----KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F S + S++ F+ T F P + + M L++A V+L
Sbjct: 234 GLFGDDSAPTAATARRALENGGSDRPESFY----ATHFQSAFASPFVSLVMLLLSAPVAL 289
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
RS Q +++ G+ +G + ++ + G+SG L P+ A
Sbjct: 290 ANFRSGQGAVLLTAGLGAGLLFLVANGMLTALGESGALSPLLA 332
>gi|91204945|ref|YP_537300.1| putative permeases [Rickettsia bellii RML369-C]
gi|91068489|gb|ABE04211.1| Putative permeases [Rickettsia bellii RML369-C]
Length = 362
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 141/318 (44%), Gaps = 30/318 (9%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQ-LLNPFVVGSILLGIFT 116
+VP ++ Q+ I+ + NL + +EL + GI IWQ L+ P++V +++LGI
Sbjct: 59 KVPYLLNQVSALISFTSMLFFLRNLTKNNELTAILSSGIHIWQVLIIPYIV-TLILGIVF 117
Query: 117 VLVINPIATSG----EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-----QDIFIGAK 167
++NPI G + + L ++ + KS ++ + ++ Q I I K
Sbjct: 118 TTILNPIGALGLQKYDLLEAKLTKKTHNEAVISKSGLLFFEALNGKNQIIQTQFINISEK 177
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT 227
K+ + T + ID N + R DA II N + L +V + N
Sbjct: 178 KL-------NNITVLFIDNNNNFLKRIDALYGIIENKSLHLNRVKVFTKDSTEAHNN--- 227
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIK--KM--SFSNKSNIFHNYRAETQFYFLIVIPLM 283
L IP + +F I K K+ N NY + +Y + P M
Sbjct: 228 LTIPTNL-SVNSLVNKFTHPEMVSIWKLPKLIDELLNSGLPITNY--QVYYYKQLFKPAM 284
Query: 284 LVAMTLIAAS-VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
++A ++A+ +SL+ R N I+ G+FSGF++Y++ I+ L +AA L+
Sbjct: 285 MIATIILASCFISLK-QRDNSQEKILILGLFSGFIVYSLSEILLKVLTYNNLSLIAAILL 343
Query: 343 PVILTISLSILILLQKED 360
P +L +S I+L ++
Sbjct: 344 PSMLIFFISNFIILHYKE 361
>gi|157827727|ref|YP_001496791.1| putative permeases [Rickettsia bellii OSU 85-389]
gi|157803031|gb|ABV79754.1| Putative permeases [Rickettsia bellii OSU 85-389]
Length = 362
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 138/317 (43%), Gaps = 28/317 (8%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
+VP ++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI
Sbjct: 59 KVPYLLNQVSALISFTSMLFFLRNLTKNNELTAILSSGIHIWQVLIIPCIVTLILGIVFT 118
Query: 118 LVINPIATSG----EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-----QDIFIGAKK 168
++NPI G + + L ++ + KS ++ + ++ Q I I KK
Sbjct: 119 TILNPIGALGLQKYDLLEAKLTKKTHNEAVISKSGLLFFEALNGKNQIIQTQFINISEKK 178
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ + T + ID N + R DA II N + L +V + N L
Sbjct: 179 L-------NNITVLFIDNNNNFLKRIDALYGIIENKSLHLNRVKVFTKDSTEAHNN---L 228
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIK--KM--SFSNKSNIFHNYRAETQFYFLIVIPLML 284
IP + +F I K K+ N NY + +Y + P M+
Sbjct: 229 TIPTNL-SVNSLVNKFTHPEMVSIWKLPKLIDELLNSGLPITNY--QVYYYKQLFKPAMM 285
Query: 285 VAMTLIAAS-VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+A ++A+ +SL+ R N I+ G+FSGF++Y++ I+ L +AA L+P
Sbjct: 286 IATIILASCFISLK-QRDNSQEKILILGLFSGFIVYSLSEILLKVLTYNNLSLIAAILLP 344
Query: 344 VILTISLSILILLQKED 360
+L +S I+L ++
Sbjct: 345 SMLIFFISNFIILHYKE 361
>gi|322418226|ref|YP_004197449.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
gi|320124613|gb|ADW12173.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
Length = 360
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 149/350 (42%), Gaps = 25/350 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVF-VIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K YL+ L LG+ I ++ V+D E ++ S + T++P +
Sbjct: 3 ILTRYVAKAYLRM-LGLCLGSFITIYLVVDFMEKVSRFTR-AGASWKYLVLFFITKIPEM 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ ++ + + +SEL R+ G+S+ ++ P + S+L+ + +++
Sbjct: 61 VVDSAPLAVLMATLLTLGSFSLSSELTAMRSCGVSLARISAPILAISVLMSLVVLMLGEF 120
Query: 123 I--ATSGEKIGID--LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ + ++I I LIQ+ K S I + ++ + A P + +
Sbjct: 121 VIPKSYAQRIYIQEVLIQK------KSPSTYFRQHNIWHREEGNVLRASLFEPSQNQLKG 174
Query: 179 FTSITIDKKNKI-IHRKDADLAIIYNDKVKLKKVV--EYQYGRIPIDKNSTTLNIPIKMD 235
T + K + + R DA L + N K VV E++ I + L P+K+
Sbjct: 175 VTLWEVQPKTGLPLRRTDAALGQLGNQGWVFKDVVVREFEGADISRTRKYPQLAAPLKLK 234
Query: 236 G-----FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
K+S+ R KK+ ++ + R TQF+ I +P M +
Sbjct: 235 PADLKVLGKYSDSMTLRELNRYCKKI----QAGGYDATRYITQFHSRISLPFGCAVMAFL 290
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+L RS+ + I GF+ I +++ S G+ G+L P+AAA
Sbjct: 291 GIPFALRGGRSSGIAFGIGLSIGVGFLYVIINSVIISVGQVGLLPPIAAA 340
>gi|189425644|ref|YP_001952821.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
gi|189421903|gb|ACD96301.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
Length = 359
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/371 (22%), Positives = 167/371 (45%), Gaps = 26/371 (7%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA--ATR 58
M GI+ RY +L+ L G + + ++D E ++G S A+L +
Sbjct: 1 MFGIVGRYLAGTWLRLFLLCQGGFLAVYLILDFME---KLGRFSKAGASLSAILQFFLFK 57
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF--- 115
+P ++ Q +PF L+ ++ L+R+SEL R+ G+SI +++ P ++ +L +
Sbjct: 58 IPEMLGQTMPFAVLMATLLALGMLSRSSELTALRSCGLSIPRIVLPILMLGLLGSLVLLV 117
Query: 116 -TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP--QQDIFIGAKKILPE 172
+ V+ E I +I++ N + ++I W + +N Q +F + L
Sbjct: 118 NSEFVVPKSYQQMEHIEKVVIKKQSVNTFFRLNNI--WFRSNNLILQAKVFEPLTRTLKG 175
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
+WE + + + R DA+ A+ + +L +V + S L++P+
Sbjct: 176 VTVWE------LSADMQPVRRMDAEQALYGSGGWELLQVRTRSFAGQGGVVASARLSVPL 229
Query: 233 --KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
K+D + + SF ++ ++ + S + + R T + + +P M ++
Sbjct: 230 TLKVDDLRILDNNADNFSFRKL-REYAVSLEKGGYPAGRYRTMMHAKLALPFGAFVMVVL 288
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA----LIPVIL 346
+L+ R++ + V G+ GF + I ++S+G+SG+L P AA LI V+
Sbjct: 289 GIPFALKTGRTSGVAMGVGAGVAIGFAYFIINAAVQSYGRSGVLPPFVAAWGANLIFVLT 348
Query: 347 TISLSILILLQ 357
I LS+ + Q
Sbjct: 349 GIWLSMTVKQQ 359
>gi|119383652|ref|YP_914708.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
gi|119373419|gb|ABL69012.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
Length = 373
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 162/376 (43%), Gaps = 22/376 (5%)
Query: 4 ILWRYFFKYYLK--TTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + +L+ + + GA++ F+ID+ E + + N +S A L+ +
Sbjct: 2 ILSTYVARRFLRMLVMIAAIFGAIL--FLIDIVEQIRRFSD-ENIGLSGAAGLSLLNITA 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+P IT++ I +F NL+R+SELV RA G S ++L V + L G+ V V+N
Sbjct: 59 SFYSILPLITVLAGIALFLNLSRSSELVAIRASGRSGIRVLAAPAVTAALAGMLAVAVLN 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKS--DIIPWMQISNPQQD---------IFIGAKKIL 170
P+ + K D + Q + G + S D W++ + P ++ + I A +
Sbjct: 119 PVVAATTKRYDDAVAQMRSGGGQTVSVGDNAVWLRQALPTRNGNGDETSGQVVIRASRAS 178
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY---QYGRIPIDKNSTT 227
P+ D T + R DA A + +L + E+ Q + + +
Sbjct: 179 PDATTLYDATFMVFAPDTGPTRRIDAATARLTQGAWELTDIKEWPLTQPNPETMARTAPR 238
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSF--SNKSNIFHNYRAETQFYFLIVIPLMLV 285
L +P + + + F + + +F + F R + F + PL+L
Sbjct: 239 LELPTDLTA-ARIRDSFGRPEAIPVWQLPAFIKGLERAGFSAQRHKVWFQMELARPLLLA 297
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
AM IAA ++ R + ++V G L+ + + + G +G + P A P I
Sbjct: 298 AMIAIAAVFTMRHMRGRRMGLLVLGAFGCGIGLFFLRNLAQVLGDNGGIPPALAGWAPPI 357
Query: 346 LTISLSILILLQKEDG 361
+ + ++ LL+ EDG
Sbjct: 358 VALLFALGALLRLEDG 373
>gi|224368912|ref|YP_002603074.1| putative permease [Desulfobacterium autotrophicum HRM2]
gi|223691629|gb|ACN14912.1| putative permease [Desulfobacterium autotrophicum HRM2]
Length = 359
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/377 (21%), Positives = 153/377 (40%), Gaps = 48/377 (12%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGEL-PNYSISRGAVLAATRVPLI 62
IL RY+ K + T + ++ ++L + ++ + N L N+S+ +G ++P +
Sbjct: 3 ILHRYWLKEF--TRFFAIVQMLLLCIFLAVDYLSNMEKFLRSNFSLIQGLGYILLKIPFM 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI-------- 114
Q P ++ IVVF +NR +EL+ + G+S++ LL P V+ ++L +
Sbjct: 61 FVQFTPAGVVLATIVVFSLMNRNNELLALKGSGVSVYHLLKPVVLVGVILAMTMIFLGET 120
Query: 115 ---FTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP 171
+T+ N I +S K + W++ + + II + NP + G
Sbjct: 121 IVPYTMAKANHIRSSTLKKNKKIYATWENIWIRDGNKIIH-INYFNPADNSISG------ 173
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
T + KI R DA+ + + +L V+E P D++ N
Sbjct: 174 -------ITITSFGADFKIATRVDAENGRFDSGQWQLSNVLEQNN---PGDEH----NAD 219
Query: 232 IKMDGFQKFSEQFASRSFYEIIKK---MSFSNKSNIFHNYRAE--------TQFYFLIVI 280
I+ + F+ + KK MS H E F+ I
Sbjct: 220 IQFYDHKAFALDVEPADLKTVAKKTDQMSIQELKAYIHKIENEGYDATHYIVDFWAKIAF 279
Query: 281 PLMLVAMTLIAASVS-LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
P++ + M L+ A L ++ N P + +A GI F + + S G G++ P +
Sbjct: 280 PIICLVMALVGAGAGMLSAAKENMP-LGIALGIGVAFCYWVVHGFCTSLGYGGMIPPFLS 338
Query: 340 ALIPVILTISLSILILL 356
A ++ I L+ + L+
Sbjct: 339 AWTADLIFICLTTIFLV 355
>gi|189345952|ref|YP_001942481.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
gi|189340099|gb|ACD89502.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
Length = 360
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/376 (22%), Positives = 163/376 (43%), Gaps = 49/376 (13%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPL 61
+L+R+ F+ ++ + FL ++ + L + + E + I ++ +P
Sbjct: 3 LLYRHIFRQFMTS---FLFASIAFAALFTLITMVENLDEFFDRGIGISGIVWYYLLALPS 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL--- 118
Q P L+ +I+ L+ +SEL R+ G+ + QL+ P+V+G +L+ +L
Sbjct: 60 TFQITAPVAALLASILTAGRLSASSELAAIRSAGVGMSQLMRPYVLGGLLISGINLLNAS 119
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW-- 176
+ P A + EKI + K ++ +S + + +I + I PEN I
Sbjct: 120 FLEP-AAAKEKISFE-----KQVLNETRSGL-------HEGTNIHV----IEPENRIVTI 162
Query: 177 EDF-------TSITIDKKN--KIIHRKDA-----DLAIIYNDKVKLKKVVEYQYGRIP-- 220
E F + +T+++ N ++I RKDA D AI D+ ++K +G P
Sbjct: 163 ESFDAKHLQASKVTVEQFNGSRLISRKDASRMVFDPAI---DRWIMQKAAIRSFGADPGE 219
Query: 221 --IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+ TLN+ + + Q+ S Q + + + + ++ RA + +
Sbjct: 220 ISFSTGNDTLNLLLSIQSLQELSLQPEEMNLMQHYRYVKEKMQAGFPGLDRARVKLHAKT 279
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+PL + + I +S RS I A +F GF+ + + S G +GI+ P
Sbjct: 280 ALPLASLVIIFIGVPLSTVKKRSGLAAEI-AIALFIGFLFLGMQKTVASLGYNGIIEPWI 338
Query: 339 AALIPVILTISLSILI 354
AA +P+IL + L+
Sbjct: 339 AAWLPIILFLGAGALL 354
>gi|16125407|ref|NP_419971.1| hypothetical protein CC_1155 [Caulobacter crescentus CB15]
gi|221234150|ref|YP_002516586.1| hypothetical protein CCNA_01213 [Caulobacter crescentus NA1000]
gi|13422473|gb|AAK23139.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220963322|gb|ACL94678.1| hypothetical membrane spanning protein [Caulobacter crescentus
NA1000]
Length = 353
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 75/344 (21%), Positives = 141/344 (40%), Gaps = 39/344 (11%)
Query: 12 YYLKTTLYFLLGA-MILVFVIDLNEIQNQMGELPNYSISRGAV--LAATRVPLIIQQIIP 68
Y L+T +LGA +IL+ V+ + ++ + ++ + + V AA R+P + +Q+ P
Sbjct: 6 YVLRTVATRILGAALILMSVLQILDLLDVTSDILDRGLGMAGVGYYAALRLPRLFEQVAP 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN---PFVVGSILLGIFTVLVINPIAT 125
L + F L R S +V RA GIS ++++ P V +LL V+ P A
Sbjct: 66 IAVLAGGLFAFSQLARESAIVAMRASGISGYRIVGMAVPAAVAVMLLDALCGQVLAPRAD 125
Query: 126 SGEKIGIDLIQQWKDNGD-KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L W++ ++ + +P + D+ IGA I T +TI
Sbjct: 126 P------TLADWWRNTTPVAERKEPVP--RTFRAGADLVIGANASADGRTI----TGVTI 173
Query: 185 ---DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-GRIPIDKNSTTLNIPIKMD----- 235
D K ++ + +A A L++ ++ G + + + P +
Sbjct: 174 FRRDSKGILVEKVEAPAARYDGKAWTLEQPKTTRFAGDLSQASTAAATSWPTALRPQDVQ 233
Query: 236 ---GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
G ++R E S++ F+ + F P + + M L++A
Sbjct: 234 GLFGDDSMPTAASARRALE----NGGSDRPESFYATHLQAAF----ASPFVSLVMLLLSA 285
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
V+L RS Q +++ G+ +G M ++ + G+SG L P
Sbjct: 286 PVALANFRSGQGAVLLTGGLAAGLMFLVANGMLTALGESGALTP 329
>gi|158521443|ref|YP_001529313.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
gi|158510269|gb|ABW67236.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
Length = 359
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 131/305 (42%), Gaps = 23/305 (7%)
Query: 48 ISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP-FV 106
+SR AV ++PLI+ Q P L+ ++VVF +NR +E+ ++ GI L P V
Sbjct: 46 LSRMAVFFLFKIPLIVVQTAPVGVLIASLVVFGLMNRRNEVTALKSSGIGPASLFKPAAV 105
Query: 107 VG---SILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
VG +LL I + +V+ + I + ++Q K + QK++I W++
Sbjct: 106 VGVGCCVLLLIVSEIVVPRTISRANYIWLQQVRQ-KTSSVDQKNNI--WLK----DDRTI 158
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GRIP 220
+ + P D +D+ ++ R DA + + L+ V++ Q+ G +
Sbjct: 159 VHIRHYQPREKKAFDVVLHDLDEGFRVTRRIDAARGLYDGGQWTLRNVLDQQFDVAGNVQ 218
Query: 221 IDKNSTTLNI-----PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY 275
+ + L I P +D + +++ + I+++ S + H +
Sbjct: 219 LVEFRERLKIELDLLPEDLDRAAESADEMGFVQLLDRIRQVERQGYSVVSHRVDLHAKLS 278
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
F P + + M LI A++ + AYG+ + F+ + + S G G+L
Sbjct: 279 F----PFVCLLMGLIGAALGIMGRTRGGITANAAYGVGASFVYWIFHSFCISLGYGGMLP 334
Query: 336 PVAAA 340
P+ AA
Sbjct: 335 PLIAA 339
>gi|117925963|ref|YP_866580.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
gi|117609719|gb|ABK45174.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
Length = 371
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 78/374 (20%), Positives = 152/374 (40%), Gaps = 21/374 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP IL+RY + +L+ + + L F++D E + G + L R+P
Sbjct: 1 MP-ILFRYLLQLFLQGFVKVFSIFIALFFLMDGAEQIRRFGGRDHVIWQDMVELIFLRMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
Q +P I L+ + V L R +EL + R+ G+S+ ++L PF++G +++ +L++
Sbjct: 60 HFFTQFLPPIALLTTLFVVTRLTRLNELTVIRSGGVSLVRILIPFLLGGVMVAGVQMLLL 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF--------IGAKKILPE 172
+ I I ++ N +Q + + + ++D + AK+ +
Sbjct: 120 DQIVPRTNAAAERSI--FRMNLPEQAALYESMVSLEGVRKDNLWIRDGGQILHAKRAYGD 177
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-GRIPIDKNSTTLNIP 231
+ + T ++ ++ R DA A N+ L Y++ G + T +
Sbjct: 178 KRLLLEVTIFRFTPEHDLLMRADAHKATWENEGWVLHNGQIYRFNGHTTQSEPFTRMPWA 237
Query: 232 IKMDGFQ--KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE---TQFYFLIVIPLMLVA 286
I ++ Q + + Q S + K + Y A Y + PL +A
Sbjct: 238 INLEKEQIKRATPQPEELSLQALWKHADRLARE----GYDATPYWVTLYRKLADPLTTLA 293
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
L+A +L R + G +GF ++ ++ + + G L P AA PV+
Sbjct: 294 AILLAFPFALRLHRMGGTFRSMLMGFITGFFMFVVVDLFTALGFGERLPPFLAAFAPVMF 353
Query: 347 TISLSILILLQKED 360
I + +LL E+
Sbjct: 354 FICIGGFLLLHLEE 367
>gi|95928710|ref|ZP_01311456.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
gi|95135055|gb|EAT16708.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
Length = 360
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 133/314 (42%), Gaps = 16/314 (5%)
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL-GI 114
A ++PLI+ Q++P L+ + +T+EL RA GI + +++ PF+V ++LL GI
Sbjct: 54 AWKIPLIVSQMLPLTILLGTFLTLGGFTKTNELTAMRAGGIGLQRIVTPFLVTAVLLTGI 113
Query: 115 FTVL--VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE 172
L + P+ T + K +++D+ W + +N I + LPE
Sbjct: 114 NFALNEFLVPVGTQRSNHIFRTEVKGKTQMLAKRNDL--WFREANTLYHIQLA----LPE 167
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVV----EYQYGRIPIDKNSTTL 228
+ +D + ++ R +A A D+ + + V + Q ++ K
Sbjct: 168 KKQLRGISLYLVDSQLNLLTRIEAQAATFKEDQWQAEHVTVRHFDPQSRQLTAQKEENLR 227
Query: 229 NIPIKM--DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+P+K + F S + SF + + K+S + R + + P +
Sbjct: 228 LLPLKKTPEDFGTVSGKNEELSFTQ-LSKISTQMQREGLDATRYRVDMHSRLSTPFACII 286
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
M +A +L+ SR+ + ++ + G + + + + + G S +L P AA I+
Sbjct: 287 MAFLAIPFALQKSRNVNLSLGISISVLIGISFFIVQSTLIALGYSTVLPPFIAAWAANII 346
Query: 347 TISLSILILLQKED 360
+ + +LL D
Sbjct: 347 FALVGLFLLLSTRD 360
>gi|296283031|ref|ZP_06861029.1| permease [Citromicrobium bathyomarinum JL354]
Length = 365
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/332 (20%), Positives = 136/332 (40%), Gaps = 19/332 (5%)
Query: 38 NQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS 97
Q+ E+P + + + A+ RVP++IQ+ +P+ L+ I+ LN+ SE++ +A G+S
Sbjct: 44 GQILEVPGNTEADLWLYASLRVPMLIQRFLPYSVLLATIITLVTLNQNSEVIAMKAAGLS 103
Query: 98 IWQLLNPFVVGSILL-GIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS 156
Q+L P +V ++L+ GI + + ++ ++ DK KS +++
Sbjct: 104 AHQVLAPLIVTALLVAGISFAFNERVVTRATAQLTAWEATEFGALPDKPKSKGSIYLEDG 163
Query: 157 NPQQDIFI-------GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLK 209
Q+I G L D T +I + DA +A+ D ++
Sbjct: 164 ---QNILTARSYSGGGPAPTL------RDVTYYRRSPTAEITQKVDAPMAVHGPDGWAMQ 214
Query: 210 KVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE-QFASRSFYEIIKKMSFSNKSNIFHNY 268
+ G + + S P + E ++ F+++ + ++
Sbjct: 215 NPSVFTVGTASLAQPSQLTVAPGITPATIELQEIDPTTQPFWQLGSSIEAYRQAG-RDTE 273
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
E ++ I PL V M ++ A +RS Q + G+ GF + I +
Sbjct: 274 ELEANYWHKISGPLAAVLMPILGAVAGFGLARSGQLFMRALIGMALGFAYFVIDNAALAM 333
Query: 329 GKSGILLPVAAALIPVILTISLSILILLQKED 360
G G P AA P +L + + +L++ E+
Sbjct: 334 GDFGGYPPFLAAWAPFLLFLMIGETVLVRTEE 365
>gi|319789792|ref|YP_004151425.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
gi|317114294|gb|ADU96784.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
Length = 354
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 140/309 (45%), Gaps = 15/309 (4%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
R+PL ++IP TL+ +V + TSEL ++RA+GIS ++ P V+ +L + +V
Sbjct: 55 RLPLYGVRVIPIATLIATMVTLSRFSETSELTVARALGISTYRFSAPLVILGVLASVASV 114
Query: 118 LVINPIATSGEKIGIDLIQQWKD---NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
V + +G K ++ + + NG ++ +P + + D F+ ++LP+N
Sbjct: 115 AVQETLLPAGLKRATEIALKAGEEVTNGPQK----VPGVWFKDRAGD-FVFFWELLPKNK 169
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK--LKKVVEYQYGRI-PIDKNSTTLNIP 231
E + I + K R DA+ A IY + L++V + + +K + +N+
Sbjct: 170 RAERVSIIKV-KDFSPTGRIDAEEA-IYKGGGRWLLREVFVRDFKELKSTEKETLPINLG 227
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + + E+ + +K N NY + Y + + L+ V +I
Sbjct: 228 VSVKELLLSVNNPEAMGLLELFLTIKRLSKLNYDTNY-LRVELYSKLALGLLPVITAIIG 286
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+ R+ + ++ I M T +++ S GKS +L P+ AA P++L ++
Sbjct: 287 IPFGVYNPRNKKGYTVLLAAIIVVSMWIT-VSLFLSLGKSEVLPPLYAAFAPLLLFGAVG 345
Query: 352 ILILLQKED 360
+ +L + E
Sbjct: 346 LFLLGRVES 354
>gi|242279363|ref|YP_002991492.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
2638]
gi|242122257|gb|ACS79953.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
2638]
Length = 376
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 79/370 (21%), Positives = 163/370 (44%), Gaps = 39/370 (10%)
Query: 1 MPGILWRYFFKYYLKTTLYFL---LGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA-- 55
+PG Y Y LK ++ + LG +++ L+++ +++ + + G +L
Sbjct: 6 LPG----YLASYVLKQNIFLMCVCLGVGTGIYL--LSDLFDRLDDFIEAGLGMGTILKYF 59
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
++PLI QI+P + L+ IV + R+ EL+ R G+S+ L FV+ +++
Sbjct: 60 LVKMPLIFSQILPAVFLISMIVQLCVMARSKELLALRTGGLSLIWFLRFFVIYAVIWSFG 119
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+L I GE+ + + WK++ K D I + + AK+++P +
Sbjct: 120 QLLFSQVIGVYGEQ---EAYRIWKEDVRKSMLDKRVLKNIWLKEGRFVVEAKEVMPFGNR 176
Query: 176 WEDFTSITIDKKN----KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST-TLNI 230
+D T + N ++I + A+++ Y KL+ VE + K+ T+ I
Sbjct: 177 AKDITVYEFAEGNGGIKRVITSESAEVSSKYG--WKLENAVELSPDKFASQKHPIFTMPI 234
Query: 231 PIKMDGFQKFS-----EQFASRSFYEIIKKMSFSNKS--NIFHNYRAETQFYF-LIVIPL 282
+ ++ F+ Q ++I+++ S S + + ++ + F L+ + L
Sbjct: 235 KLNLNVFKVVDPDIDPAQLPLWQLDQVIEQLKLSGSSVDRLITAWHSKWAYAFSLLTMAL 294
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ +A+ I ++ L + G+ F Y + + S G +G L P+ AA +
Sbjct: 295 VSLALVTITENIYLN----------IGLGLAIIFTYYALFMVGASAGDTGALPPIVAAWL 344
Query: 343 PVILTISLSI 352
IL SL++
Sbjct: 345 GNILVSSLAL 354
>gi|254468723|ref|ZP_05082129.1| permease YjgP/YjgQ [beta proteobacterium KB13]
gi|207087533|gb|EDZ64816.1| permease YjgP/YjgQ [beta proteobacterium KB13]
Length = 355
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/362 (22%), Positives = 154/362 (42%), Gaps = 29/362 (8%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN--YSISRGAVLAATRVPLIIQQII 67
F++++ +L A+ LVF+ + ++G L + Y +S+ V +P + +II
Sbjct: 9 FEFFINISLV----AIGLVFLFAFFDFLQEIGNLNSGKYDLSKIIVFITLSMPGHLYEII 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P L+ + L+ SELV+ R G+SI Q+ + ++ S+ G+ T +V N I
Sbjct: 65 PLSCLIGAMFTVGQLSGNSELVVMRTSGMSILQIASSLIIVSLFFGVLTFMVGNLITPVS 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN-----HIWE---DF 179
EK + D WM+ N F+ + +LP+ HI+E DF
Sbjct: 125 EKNAQQIKISSTDGSVTTDFKSGVWMKDGNN----FVNIENVLPDASLRNIHIYEFDNDF 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVE--YQYGRIPIDKNSTTLNIPIKMDGF 237
+ +I K + I +K+K +++ + +P S T IK +
Sbjct: 181 SLRSIVDAEKGRYEN----GIWELEKIKQSFILDEGFDVKTLP----SGTWKSMIKPEMM 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S +++ +++ K+N R E F+ I+ P+M + M L A
Sbjct: 233 NVLLISPDRMSIFDLNDFINYLKKNNQ-KTSRYEVSFWEKIIQPVMPIIMILFAVPFGFF 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + + GI G + + ++M+ G P+ A+IP I+ + ++I ++
Sbjct: 292 QERSGGKYLKMFLGIIFGIIYQIMNSMMRHIGVLNDWEPIITAIIPSIVILGIAIYLMFY 351
Query: 358 KE 359
E
Sbjct: 352 FE 353
>gi|323140935|ref|ZP_08075848.1| permease, YjgP/YjgQ family [Phascolarctobacterium sp. YIT 12067]
gi|322414673|gb|EFY05479.1| permease, YjgP/YjgQ family [Phascolarctobacterium sp. YIT 12067]
Length = 363
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 82/378 (21%), Positives = 151/378 (39%), Gaps = 46/378 (12%)
Query: 7 RYFFKYYLKTTLY---FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT------ 57
R +Y LK LY F + A +F+ + ++ Y GA L
Sbjct: 4 RLLDRYVLKELLYPFVFGIAAFSSIFIAS-----TMLFKITQYMTKYGAPLETVARLFMY 58
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
+P +I P L+ ++ F L+ +SE+ +A G+S ++++ P +V + +F++
Sbjct: 59 NLPEVINYTFPMSMLLAALMAFGKLSGSSEITAMKAGGVSYYRIVAPVLVVGFFVSMFSM 118
Query: 118 LVINPIA-TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
+ + TS K I L ++ + N + I IS Q + K +
Sbjct: 119 VWAEKVVPTSKAKASIILNEEIRHNTRPTTQNHIIIKTISGDTQRVTYANKF----DEKL 174
Query: 177 EDFTSITIDK--KNKIIHRKDADLAIIYN--------------DKVKLKKVVEYQYGRIP 220
T ITI++ K KI + A N DK ++ +++ IP
Sbjct: 175 GKMTDITIEEFNKGKIARIQTAKEGYWENGSWRIVDGNVFALDDKDGVQSSAKFKEQIIP 234
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
++ + P ++ QK E+ R E I + + S R + + I I
Sbjct: 235 LNFS------PKQISWEQKEPEEMTIRELREYISMLEEQHTSAA----RQWCEIFMRINI 284
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
PL +I A + + R++ I + I F+ Y I+T GK G + P+ A
Sbjct: 285 PLASFFFAMIGACLGTQKQRTSS-SIGLGISIIVIFIYYAIMTFTTGLGKGGAMPPLLAC 343
Query: 341 LIPVILTISLSILILLQK 358
+P IL + + + ++ +K
Sbjct: 344 ALPNILCLGVGVYLMKKK 361
>gi|291287414|ref|YP_003504230.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
12809]
gi|290884574|gb|ADD68274.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
12809]
Length = 361
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 81/371 (21%), Positives = 157/371 (42%), Gaps = 32/371 (8%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGE---LPNYSISRGAVLAA--TRVPLII 63
F KY +K L+ ++ VFV + I N L Y+IS ++ + P ++
Sbjct: 4 FNKYIIK--LFVQYTVIVQVFVAIITLIANTFQHTKMLSEYNISFMTLIVYDLMKTPYLL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI---FTVLVI 120
+P ++ ++V L + +EL+ ++G I L PF+V I L + F+ VI
Sbjct: 62 YTTMPMTIVISTMLVMVTLLKNNELIAYVSLGGKIRNLAYPFIVSGIFLSVLLYFSADVI 121
Query: 121 NP-IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP I E+ + I+ N + +D+ W++ S+ FI + P
Sbjct: 122 NPKIMLERERFAYENIKNRTFNVSGKLTDM--WLKESDSS---FININLMDPTEKKIIGI 176
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK-----M 234
T ++ ++ + D A Y K K + +P+ +S I + +
Sbjct: 177 TEYHLNNNFQVDYIVTYDSAEYYEGKWIEKNKKVFAMDPVPVMTDSAEEVIQERELFDEL 236
Query: 235 DGFQKFSEQFAS----RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
S +F S R EI+KK + Y++ +IVI L++ +
Sbjct: 237 TSLPVLSPKFLSLKEVRRTAEIMKKQDINTAKYYLQLYKSYAHALSVIVIILVIFPL--- 293
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ F+R++ + + +F+GF + ++ +S GK+G+ P+AA IP+ L
Sbjct: 294 ----CIGFNRNHSYIAVASKSLFTGFAYWMLMASFQSLGKTGLFSPLAANFIPIGAFFIL 349
Query: 351 SILILLQKEDG 361
++ ++ ++E
Sbjct: 350 ALALIYRRERA 360
>gi|289523522|ref|ZP_06440376.1| membrane protein, YjgP/YjgQ family [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289503214|gb|EFD24378.1| membrane protein, YjgP/YjgQ family [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 369
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 130/309 (42%), Gaps = 43/309 (13%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
R+P +I +P L+ I+ F L SEL RA GIS +++L P + SIL+G F +
Sbjct: 64 RLPGVIVLTLPMAALLATILSFGKLATQSELTALRASGISFYRILRPVFLASILIGGFAL 123
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD------IFIGAKKILP 171
L+ + ++ D I +++ +QK ++ ++D I+IG K+ P
Sbjct: 124 LLNETLVPLADR-AADNIMRYEVA--RQKPSLLKEQMFLKEERDGALSRVIYIG--KLFP 178
Query: 172 ENHIWED--FTSITIDKKNKIIHRKDADLA----IIYNDKV-KLKK--------VVEYQY 216
+ +D + +I+ K+ D +YN +V + K E Q
Sbjct: 179 QEGNMDDVLIQEFESGEITRILTAKNGDWKEGQWWLYNGQVFNVTKEGFVEPLFSFEKQQ 238
Query: 217 GRIPIDKNS--TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF 274
+P+ + T+ P KM F+ Y IK M+ S++ +
Sbjct: 239 LSLPLSPSQVVTSSQDPKKMSAFE----------LYNYIKLMNVQG-SDVNSLW---VLL 284
Query: 275 YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
+ + +P V + L+ ASV RS + + I F Y ++ +S G+ G +
Sbjct: 285 HLRLAVPWASVVLALVGASVGAGTRRSGSG-MGIGVSILLVFAYYVFMSFCRSLGQGGYI 343
Query: 335 LPVAAALIP 343
P+ AA +P
Sbjct: 344 PPLLAAWMP 352
>gi|149186432|ref|ZP_01864745.1| predicted permease [Erythrobacter sp. SD-21]
gi|148830021|gb|EDL48459.1| predicted permease [Erythrobacter sp. SD-21]
Length = 365
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/338 (19%), Positives = 139/338 (41%), Gaps = 39/338 (11%)
Query: 38 NQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS 97
N GEL Y A+ RVP +IQ+ +P+ L+ ++ LN+ SE++ +A G+S
Sbjct: 52 NGQGELLKY--------ASLRVPQLIQRFLPYSVLLATLISLVTLNQNSEVIAMKAAGLS 103
Query: 98 IWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN 157
Q+L P ++ ++++G + + + T ++ W +D P + S+
Sbjct: 104 AHQVLAPLLLTALVVGGVSFVFNERVVTRATAT----LKAW------DAADWGPVPEESS 153
Query: 158 PQQDIFIG-AKKILPENHI--------WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKL 208
+ ++++ +L + D T + I+ + DA A +L
Sbjct: 154 VRANVYLADGSNVLTAAQLTGSGDAIRMRDVTWYRRSPEGTIVEQVDAARATYAGPGWRL 213
Query: 209 KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA-----SRSFYEIIKKM-SFSNKS 262
+ + ++ S+T + + +G A + F+E+ +++ +F +
Sbjct: 214 ENIERFEVAA----AASSTGDSLVVGEGLTPDQIDLAKIDPDAVPFWELGERIDAFEDAG 269
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
RA +++ + PL M L+ A + +RS Q + G+ GF + +
Sbjct: 270 RRTGEMRA--KWWHKLSGPLSSFLMPLLGAVAAFGLARSGQLFVRALIGMALGFAYFVVD 327
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ G G P+ AA P L + +L++ E+
Sbjct: 328 NAALAMGNFGGYPPLLAAWAPFFLFALIGETVLIRTEE 365
>gi|197119770|ref|YP_002140197.1| membrane protein [Geobacter bemidjiensis Bem]
gi|197089130|gb|ACH40401.1| membrane protein, YjgQ-related protein [Geobacter bemidjiensis Bem]
Length = 360
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 151/354 (42%), Gaps = 33/354 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVF-VIDLNEIQNQMGELPNYSIS--RGAVLAATRVP 60
IL RY + Y+K L LG+ I ++ V+D E ++ Y S A+ T++P
Sbjct: 3 ILTRYIARAYVKM-LSLCLGSFIAIYLVVDFME---KVSRFTRYGASWKHLALFFITKIP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+I P L+ ++ L+ TSEL R+ G+S++++ P +V S+L+ + VL I
Sbjct: 59 EMIIDAAPLAVLMATLLTLGTLSLTSELTAIRSCGVSLFRISLPILVISVLMSL-GVLAI 117
Query: 121 NPIA---TSGEKIGID--LIQQWKDNGDKQKSDIIPWMQISNP--QQDIFIGAKKILPEN 173
T ++ I LIQ+ + ++ +I W + + +F A+ L
Sbjct: 118 GEFVLPKTYAQRTYIQEVLIQKKSPSAFFRQQNI--WFREEGTVLRASLFEPARNELKGI 175
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
+WE + + R +ADLAI+ + V Q+ + +P++
Sbjct: 176 TLWE-----LQPGTGEPLKRTEADLAILGAKGWMFRDAVVRQFRDGEVSSTQKYRELPVE 230
Query: 234 MD-------GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+ KFS+ + +K+ +++ + R TQ + I +P
Sbjct: 231 LQLKPADLKTLGKFSDSMSLVELSRYCRKL----RASGYDPTRYVTQMHSRISMPFGCAV 286
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
M + +L RS+ V I GF+ + +++ S G+ G+L PV AA
Sbjct: 287 MAFLGIPFALRGGRSSGIAFGVGLSIGVGFLYVIVNSVIISVGQVGLLPPVVAA 340
>gi|78222462|ref|YP_384209.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
gi|78193717|gb|ABB31484.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
Length = 359
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/350 (21%), Positives = 145/350 (41%), Gaps = 26/350 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSIS--RGAVLAATRVPL 61
IL RY YL+ L + + VID E ++G + A ++P
Sbjct: 3 ILTRYIASAYLRVFWLCLASFIAIYLVIDFLE---KIGRFLRFDPQWIHVAQFFLYKIPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV---- 117
I Q+IP L+ ++ L+R SE++ R+ G+S+ ++ P + + +F +
Sbjct: 60 IATQVIPLAVLMATLLTLGMLSRNSEIIAMRSCGVSLRKISAPILAIACAASLFVIVSNE 119
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
L++ + I LI++ N ++++I W + + A+ P++
Sbjct: 120 LILPKTYSQMRFIEEVLIRKKSSNTFLRQNNI--W----HKDNKAILMARAFDPDHQTLR 173
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVV--EYQYGRIP----IDKNSTTLNIP 231
T + + R DA+ + L KV ++Q G + I LN+
Sbjct: 174 GVTLWSFSEGMTPSRRIDAEQGSWDGGQWTLWKVTVRDFQGGGVANTTQIASMPVNLNLQ 233
Query: 232 IK-MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
I+ + K+++ E I+K+ K + R E Q + I +P + M +
Sbjct: 234 IEDLKVVDKYADNMGFLKLREYIQKL----KKGGYETTRYEAQMHSKISLPFASLIMAFL 289
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+L SRS+ + + I GF + I I+ SFG++G+L + +A
Sbjct: 290 GIPFALRGSRSSGVALGIGASIGFGFAYFIINAILISFGQTGVLPSLVSA 339
>gi|260886292|ref|ZP_05897555.1| membrane protein, YjgP/YjgQ family [Selenomonas sputigena ATCC
35185]
gi|330839725|ref|YP_004414305.1| permease YjgP/YjgQ family protein [Selenomonas sputigena ATCC
35185]
gi|260864011|gb|EEX78511.1| membrane protein, YjgP/YjgQ family [Selenomonas sputigena ATCC
35185]
gi|329747489|gb|AEC00846.1| permease YjgP/YjgQ family protein [Selenomonas sputigena ATCC
35185]
Length = 363
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 130/294 (44%), Gaps = 16/294 (5%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P I P L+ ++ F L+ +SE+ ++ G+S +++ P +V +++ IF++L
Sbjct: 60 LPAIAIYTFPMSMLLAALLTFGRLSSSSEITAMKSCGVSFYRIAAPVIVLGVVVSIFSIL 119
Query: 119 VINPIATSGEKIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
I ++I + + N + D I +I + + + A++ E
Sbjct: 120 FTEHIVPRANNAYENVIAYEIQGNAAPKSQDHIVIKEIKDGEMQRLMYARRYDAATETLE 179
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKK--VVEYQYGR----IPIDKNSTTLNI- 230
T + + + + + +DA A + + + + E G+ + DK +N
Sbjct: 180 GVTLQSFE-QGETKYVQDAAYAKWEGTQWTMYRGAIYEVSGGKSEHTMRFDKQVLPINAG 238
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P ++ QK E+ + + I+ M ++ + ET+ Y I IP+ + +I
Sbjct: 239 PGRIVREQKKPEELTMKELRQQIELM----RTQFVDTKKLETELYQRITIPMASLVFAII 294
Query: 291 AASVSLEFSRSNQPR-IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ ++ +RS+ R I ++ IF F Y ++T+ + G+SG L P A +P
Sbjct: 295 GVPLGIQPTRSSSSRGIGLSLLIF--FCYYVLMTLAGALGQSGALNPAYAVWLP 346
>gi|78188283|ref|YP_378621.1| hypothetical protein Cag_0302 [Chlorobium chlorochromatii CaD3]
gi|78170482|gb|ABB27578.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
Length = 359
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 84/361 (23%), Positives = 162/361 (44%), Gaps = 37/361 (10%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR----- 58
IL RY F+ ++K FL A++ V + + + ++G ++ +S L R
Sbjct: 3 ILERYIFQQFIKA---FLFTALVFVSLFIIINMIEKLGNFMDHHVS---ALEIARYYLLS 56
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P I P L+ +I+V L +EL R+ G+S+ QLL PF G++LL +F
Sbjct: 57 IPSIFLVTSPVSALLASILVAGKLATQNELPAIRSAGVSMRQLLTPFAWGALLLFLFNFF 116
Query: 119 VINPIA--TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
+A T + + K+ GD++ ++ + + + I IGA N I
Sbjct: 117 NAGWLAPTTYSHNRTFEQLYLGKNAGDQETRNL---HLLDSGNRFISIGAF-----NPIN 168
Query: 177 EDFTSITIDKKN--KIIHRKDADLAIIYNDKVK---LKKVVEYQYG---RIPIDKNSTTL 228
E +++I++ + +I R DAD ++ YN + K + +V E + + K + T+
Sbjct: 169 ESLNNVSIERLSGATMISRIDAD-SMHYNRRTKRWTMWRVTERYFSNGYQSFTTKPTATI 227
Query: 229 NIPIKMDGFQKFS---EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+ ++ + ++ Y+ +++ + S + R+ +F+ I +P +
Sbjct: 228 RLALRPKALHEMRLQPDEITLPRHYQFLREKEEAGFSGL---ERSAVKFHNKIAMPFASL 284
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+TLI ++ R I A +F GF+ I + G G+L P+ AA +P +
Sbjct: 285 IITLIGVPLAARKKRGGIAAEI-AITLFIGFLYLGIQRTIAIAGYQGVLPPIVAAWLPNL 343
Query: 346 L 346
L
Sbjct: 344 L 344
>gi|77919519|ref|YP_357334.1| hypothetical protein Pcar_1923 [Pelobacter carbinolicus DSM 2380]
gi|77545602|gb|ABA89164.1| conserved hypothetical membrane protein [Pelobacter carbinolicus
DSM 2380]
Length = 362
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/371 (20%), Positives = 142/371 (38%), Gaps = 35/371 (9%)
Query: 10 FKYYLKTTLYFLLGAMILVF--VIDLNEIQNQMGELPNYSISRGAVLA--ATRVPLIIQQ 65
+ Y+ T + L G I F + L E ++ + Y S +A + PLII Q
Sbjct: 5 YSRYILATFFRLFGLAIGAFAGLYLLVEFFERIDDFIEYHASVTLCVAYFLNKTPLIITQ 64
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P L+ + R+ ELV A GIS+ ++ P + +L + + I
Sbjct: 65 VAPLACLMAVFMTLGGFTRSGELVAMHAGGISLAKIAAPMLRMGLLFSLIILAANEVIVP 124
Query: 126 SGEKIGIDLIQQWKDNGD--KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ G K D I W++ + +I ++I P + T ++
Sbjct: 125 PSIQRARHILTTEVRGGPAVHYKQDKI-WLRHNRSILNI----RQIEPVQQTLKGITLLS 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-----------NIPI 232
DK +I R DA A+ + + V ++ D S L ++P+
Sbjct: 180 FDKNFRIQQRFDAGSAVYSGGRWYCQDAVTRRF-----DTTSGNLLTEQRLAEKIEDLPV 234
Query: 233 KMDGFQ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ F+ K +E F+ + KK+ K ++ R + + I P + MT
Sbjct: 235 VPEDFKVPGSKRNEDLPISEFHRLGKKL----KREGYNPTRFQVDMHARIAAPFGCLMMT 290
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+ ++ R + +A + G + + + + +FG SG P+ AA IL +
Sbjct: 291 FLGIPFAIRKGRGASMALGIAISVAIGALYFILNATLLAFGYSGTFPPIIAAWSANILFL 350
Query: 349 SLSILILLQKE 359
+ L E
Sbjct: 351 LFGTWLFLHSE 361
>gi|271498969|ref|YP_003331994.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech586]
gi|270342524|gb|ACZ75289.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech586]
Length = 356
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/363 (21%), Positives = 147/363 (40%), Gaps = 17/363 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY K T + L + L +I + ++G+ YS+ + VP I
Sbjct: 4 VLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GGYSVMGAGLYTLLSVPKDI 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ + +
Sbjct: 63 EIFFPMAALLGALLGLGALATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIGEWV 122
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A +GE++ + Q G + W + N F+ +++ +N + +
Sbjct: 123 APAGEQMARNYRSQMMYGGSMLSTQSGLWAKDGND----FVYIQRVAGDNEL-QGVNLYH 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-------GRIPIDKNSTTLNIPIKMDG 236
DK +K++ + A A+ N KL +V E G + T P K+
Sbjct: 178 FDKHSKLLSVRYAASAVYENGSWKLSQVEESDLNDSKQIGGSQTVSGEWKTNLTPDKLGV 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + R Y+ IK + S + R + + + PL + M L+A S
Sbjct: 238 VALDPDALSIRGLYDYIKYLRQSGQ----EANRYQLNMWSKLFAPLSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + + GI GF+ Y + I + PV AL+P L + +S+++LL
Sbjct: 294 GPLRSVPAGMRIVIGISFGFLFYVLDQIFGPLSLVYHMPPVLGALLPSALFLFISVMLLL 353
Query: 357 QKE 359
++
Sbjct: 354 KRR 356
>gi|332187143|ref|ZP_08388883.1| hypothetical protein SUS17_2304 [Sphingomonas sp. S17]
gi|332012843|gb|EGI54908.1| hypothetical protein SUS17_2304 [Sphingomonas sp. S17]
Length = 366
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/368 (21%), Positives = 140/368 (38%), Gaps = 31/368 (8%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y K +L T L +I++ +D+ + P ++ + R P II I+
Sbjct: 15 YMAKMFLLRTFAILFALVIVLQALDILSESGAILATPGNGEAQVWRYVSLRAPQIIAFIL 74
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV---INPIA 124
PF L+ I+ FF +N+ SE++ +A G+S Q+L P +V S + + + I P A
Sbjct: 75 PFSVLLGTILTFFTMNQNSEVIALKAAGLSAHQVLAPLLVASAGVAVLSFAFNDRIVPRA 134
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
T+ + W QK D P S + ++++ L + + + T
Sbjct: 135 TA-------TLSAW------QKVDYGPIPIDSGDRSNVWVRDGDDLISVDLVQGRGANTQ 181
Query: 185 DKKNKIIHRK-DADLAIIYNDKVKLKKVVEYQYG---RIPIDKNSTTLNIPIKMDGFQKF 240
+ RK L I + +Q G R + T +IP + G
Sbjct: 182 LGGVTLYDRKGGGSLQAIVRAPRGRRMGDGWQIGPATRFEVASGKLT-SIPSMIIGRGVT 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRA--------ETQFYFLIVIPLMLVAMTLIAA 292
EQ S +SF SN + R E + + P+ + M L+ A
Sbjct: 241 PEQLTLASVNA--DGLSFKGLSNAIDDLREAGRPTKTLEGSLWHKLSAPMSAILMPLLGA 298
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ +RS + + G+ GF + + G G P AA P++L +
Sbjct: 299 VAAFGIARSGKLFVRAVIGMALGFAFFVADNFSMAMGDLGAYPPFLAAWAPILLFFLIGE 358
Query: 353 LILLQKED 360
+L + E+
Sbjct: 359 AVLFRTEE 366
>gi|37528300|ref|NP_931645.1| hypothetical protein plu4479 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787738|emb|CAE16851.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 359
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 90/371 (24%), Positives = 157/371 (42%), Gaps = 25/371 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L+T L L + L +I E ++G+ +IS G + + VP
Sbjct: 1 MFGVLDRYIGRTILQTILMTLFMLVSLSGIIKFVEQLRKVGQGEYTTISAGLYVLLS-VP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IQ P L+ ++ L SELV+ +A G + Q+ + +I L I T+++
Sbjct: 60 KDIQIFFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAGSVMKTAIPLVILTMVIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN------- 173
+A GE++ + Q G ++ W D FI ++I+ +
Sbjct: 120 EWVAPQGEQMARNYRAQKMLGGSLVSTNKGMW----TIDGDDFIYIQRIVSDTEIKGVNI 175
Query: 174 -HIWEDFTSITIDKKNKIIHRKDADL----AIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
H +D +++ ++ KD DL + +D KK+ Q RI D L
Sbjct: 176 YHFNDDKKLLSVKYAASAVYDKDNDLWKLSQVEESDLTDSKKITGSQ--RISADWK--IL 231
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
P +++ E + Y+ IK + S + + R + + I PL + M
Sbjct: 232 LTPEQLNVVALEPEALSISGLYQYIKYLKQSEQ----ESGRYQLNMWKKIFAPLSVAVMM 287
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+A S RS + + GI GF+ Y + I + V AAL+P +L +
Sbjct: 288 LMALSFIFGPLRSVPMGVRIVTGISFGFLFYVLNEIFGPLSLVYSVPAVLAALLPSLLFL 347
Query: 349 SLSILILLQKE 359
++SI +LL++
Sbjct: 348 TVSIYLLLKRR 358
>gi|291532164|emb|CBL05277.1| Predicted permeases [Megamonas hypermegale ART12/1]
Length = 361
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 151/318 (47%), Gaps = 31/318 (9%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P II P L+ ++ F L+ SE++ +A G+S +L+ P + S+ + IF++
Sbjct: 58 LPGIIVWTFPMSMLLAALLTFGRLSGNSEIIAMKACGVSFKRLVTPVIAFSLGVSIFSIG 117
Query: 119 VINPIATSGEKIGIDLIQ---QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+ + + DL++ Q + + Q+ II +Q N Q+ ++ A+K E
Sbjct: 118 FNEYVVPASNQAYADLVRYEIQGNTSPESQEHIIIKQIQDGNIQRLVY--ARKYDAETGN 175
Query: 176 WEDFTSITIDKKNKIIHRKDADLA-------IIYN------DKVKLKKVVEYQYGRIPID 222
++ SI ++ K++ ++A+ A ++YN + ++++++ +PI+
Sbjct: 176 LDNL-SIQEFEQGKMVRVENAEYAKWSVDEWVMYNGVLYDLSQPNTERMMKFDSQVLPIN 234
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
+ P ++ QK ++ + E I M KS + E + Y +P+
Sbjct: 235 QT------PKQIIKSQKKPDEMTIKELREQINIM----KSQYVDTKKLEIELYQRFTVPM 284
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ LI A + ++ +RS+ I I F+ YT++T+ + G++ + PV A I
Sbjct: 285 ASLMFALIGAPLGIQPNRSSS-SIGFGISIIIIFIYYTLMTLAGAIGQNSFIPPVIAVWI 343
Query: 343 PVILTISLSILILLQKED 360
P I+T+ ++ + L++KE
Sbjct: 344 PNIVTL-IAGIYLIRKES 360
>gi|222054622|ref|YP_002536984.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
gi|221563911|gb|ACM19883.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
Length = 357
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/336 (21%), Positives = 137/336 (40%), Gaps = 27/336 (8%)
Query: 18 LYFLLGAMILVF-VID-LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVN 75
L LG I +F V+D L +I G P Y A+ TR+P +I Q L+
Sbjct: 16 LCLCLGTFIAIFLVVDFLEKIGRFAGANPAYI----ALFFLTRIPEVICQTSAMAVLMAT 71
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL----VINPIATSGEKIG 131
++ + +SEL R G+S+ ++ P +V + + I + V+ G+ I
Sbjct: 72 LLTLGMFSMSSELTAMRGCGLSLGRIAMPILVIAFSVSILNLAINEYVLPRCIVQGQYIR 131
Query: 132 IDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII 191
LI++ K + M I + + + A P + + T + +
Sbjct: 132 EVLIEK------KSPNLFFRQMNIWHRDDNFILKANLFDPASGQLKGITVWRMGAGMQPE 185
Query: 192 HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD-------GFQKFSEQF 244
R DA A + L VV ++ I K S ++P+ ++ +KFS+
Sbjct: 186 QRLDAATAKLDAGGWLLTDVVAREFSESNIIKTSEVASMPVPLNLRATDLKVMRKFSDNM 245
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
R +K+ + + R Q + I + + M + ++ SRS+
Sbjct: 246 GIRELAAYCEKL----RKGGYDPTRYLAQMHGRISLAFAPLVMAFLGVPFAVRGSRSSGI 301
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ ++ + GF + + +I+ SFG++G+L PV +A
Sbjct: 302 ALGISASLGIGFGFFVLNSIVLSFGQAGVLSPVISA 337
>gi|261401001|ref|ZP_05987126.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
gi|269209118|gb|EEZ75573.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
gi|309378517|emb|CBX22870.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 356
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/378 (21%), Positives = 160/378 (42%), Gaps = 54/378 (14%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + T+Y LL + L ++ +G+ +Y I A ++P ++
Sbjct: 6 RYIIRQMTAMTVYTLLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPARAYEL 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P TL+ ++ L SEL + +A G+S +LL+ +L F ++ A
Sbjct: 65 MPLATLIGGLLSLGRLAADSELTVIKAGGVSTRKLLS-------VLSQFGLIFALATAAL 117
Query: 127 GEKIGIDLIQQWKD------NGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN-----HI 175
GE I L Q+ ++ NG + W++ +Q+ I +++LP++ I
Sbjct: 118 GEWIAPALNQKAENIKAAAINGKISTGNTGLWLK----EQNSIINIREMLPDHTLLGIKI 173
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKV-KLKKVVEYQYGRIPIDKNSTT-LNIPIK 233
WE + KN+++ +A+ A++ +D +LK + G ++ +S N+PI
Sbjct: 174 WER------NDKNELVQATEAESAVLNDDGSWQLKNIRRSTLGEDKVETSSAAEENLPIS 227
Query: 234 MDGFQKFSEQFASRSFYEII----KKMSFSN-KSNIFH--NYRAETQFYFL-----IVIP 281
+ R+ E++ +MS + I H N R TQ Y + +V P
Sbjct: 228 VK-----------RNLMEVLLVKPDQMSVGELTAYISHLENNRQNTQIYAIALWHKLVYP 276
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ M L+A + + + +R + + GI G + + + + + P A +
Sbjct: 277 VAAWVMALVALAFTPQTTRHGNMGLKLFGGICLGLLFHFAGRLFGFTARLYGVPPFLAGI 336
Query: 342 IPVILTISLSILILLQKE 359
+P L + I ++ ++E
Sbjct: 337 LPTALFALIGIWLIRKQE 354
>gi|152985629|ref|YP_001346669.1| hypothetical protein PSPA7_1284 [Pseudomonas aeruginosa PA7]
gi|150960787|gb|ABR82812.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
Length = 355
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/357 (22%), Positives = 141/357 (39%), Gaps = 52/357 (14%)
Query: 24 AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLN 83
A++ F+ +LN+I +Y I A P ++P L+ +V L
Sbjct: 27 ALLFAFIDELNDIS------ASYGIGEALRFIALTAPRRAYDMLPMAALIGCLVGLGTLA 80
Query: 84 RTSELVISRAIGIS----IWQLLNPFVV---GSILLGIFTVLVINPIATSGEKIGIDLIQ 136
SEL I RA G+S +W ++ P +V IL+G + IA SG +
Sbjct: 81 SNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVGEYVAPWTENIAQSGRALA----- 135
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
+ GD Q S W + Q +I + P N + T D++ + A
Sbjct: 136 --QGGGDSQSSKRGLWHR----QGREYIHINAVQP-NGVLYGVTRYRFDEQRGLQSASFA 188
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEII--- 253
A D +L+ V P +K S + +P +++ Q + + ++
Sbjct: 189 KRARFETDHWQLEDVTTTLLH--PQEKRSEVVKLPT-----ERWDAQLSPQLLNTVVMEP 241
Query: 254 KKMSFSNKSNIFH--------NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ +S S H N R F+ ++ PL+ A+ L+A S RS
Sbjct: 242 EALSISGLWQYIHYLADQGLNNNRYWLAFWTKVLQPLVTAALVLMAISFIFGPLRS---- 297
Query: 306 IIVAYGIFSGFMLYTIITIMKS-FGKSGILL---PVAAALIPVILTISLSILILLQK 358
+ + IF+G ++ + I + G S ++ P+ A +IP +L+ L LL++
Sbjct: 298 VTLGQRIFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVVIPAS-ACALAGLWLLRR 353
>gi|148556807|ref|YP_001264389.1| permease YjgP/YjgQ family protein [Sphingomonas wittichii RW1]
gi|148501997|gb|ABQ70251.1| permease YjgP/YjgQ family protein [Sphingomonas wittichii RW1]
Length = 364
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 124/318 (38%), Gaps = 32/318 (10%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
R P II + +PF L+ ++ F LN+ SE++ +A GIS Q+L P VV S+ +GI +
Sbjct: 64 RTPQIIARFLPFAALLATLITFVTLNQNSEIISMKAAGISAHQILAPLVVASLGVGIVSF 123
Query: 118 LVINPIATSGEKI---GIDLIQQWKDNGDK---QKSDIIPWMQISNPQQDIFI------G 165
T E++ + W+D + I+P + + + I G
Sbjct: 124 -------TFNERVVARATATLTAWQDADYGPIPRDRGIVPNIWVRDGDDLIHATAVRGRG 176
Query: 166 AKKILPENHIWEDFTS--ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
A+ L I++ I+I K + + I + + K V + K
Sbjct: 177 AQARLDSVTIYDRDGGRLISIIKGERAVQAA-GGWRITGASRFDVAKGVTLRLAGFDFAK 235
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMS-FSNKSNIFHNYRAETQFYFLIVIPL 282
T D F + AS+S ++ ++ RA + + PL
Sbjct: 236 GVTA-------DRFTLANVDPASKSIVQLRTAIADLDAAGRPTGPLRA--GLWHKLSGPL 286
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
V M L+AA + +RS I G+ GF + + G G P AA
Sbjct: 287 SAVLMPLLAAVAAFGLARSGHLFIRAVIGMALGFAYFVADNFALAMGNLGAYPPFLAAWA 346
Query: 343 PVILTISLSILILLQKED 360
P +L + + +L++ E+
Sbjct: 347 PFLLFLLIGETVLIRTEE 364
>gi|297537469|ref|YP_003673238.1| permease [Methylotenera sp. 301]
gi|297256816|gb|ADI28661.1| permease YjgP/YjgQ family protein [Methylotenera sp. 301]
Length = 356
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 80/371 (21%), Positives = 156/371 (42%), Gaps = 34/371 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K + L +L + + DL + + +G+ +Y + + + P +
Sbjct: 3 ILNKYLLKEIVSNVLMVMLALIAMFSFFDLIQELDALGK-GSYGLGKILLFVLLSAPGHV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P LV + L R SELV+ R G+SI+ + + + I T L+ +
Sbjct: 62 YDVMPVAVLVGCMYSLGQLARYSELVVLRVSGLSIFDIAVLLLKIGAIFTIITFLIGELV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN-----HIWED 178
EK + + D+ Q+ W++ N FI +++LP+ HI+ D
Sbjct: 122 TPFSEKTAQRMRIKATDSVVAQEFRSGLWVKDGNS----FINVEEVLPDATLLNIHIF-D 176
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST------TLNIPI 232
F DK K+I ++A ++ KLK V + + + + + + +L P
Sbjct: 177 F-----DKNAKLISTRNAKAGEFKHESWKLKDVTDTSFDKDSVKVSQSLEATWHSLIRPE 231
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
++ E+ ++ + Y I +S + + R E + ++ PL + M ++A
Sbjct: 232 LLNVLLIMPEKMSAWNLYTYINHLSINKQKTT----RYEVALWAKMIYPLACMVMVVLA- 286
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM-KSFGKSGIL---LPVAAALIPVILTI 348
L F Q + IF G ML + I+ + F G+L P+ +A++P I+ +
Sbjct: 287 ---LPFGFVQQRAAGASTKIFVGIMLGVMYQILNRVFAHLGLLNDWPPLFSAIMPTIMFL 343
Query: 349 SLSILILLQKE 359
+ +L E
Sbjct: 344 MAGVAMLFYVE 354
>gi|289649165|ref|ZP_06480508.1| hypothetical protein Psyrpa2_15669 [Pseudomonas syringae pv.
aesculi str. 2250]
Length = 353
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 82/373 (21%), Positives = 156/373 (41%), Gaps = 50/373 (13%)
Query: 11 KYYLKTTLYFLLGAM-ILVFVIDLNEIQNQMGELPN-YSISRGAVLAATRVPLIIQQIIP 68
+Y K+ L +L + I++ ++ L ++MG++ + Y+++ P + +P
Sbjct: 6 RYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISDTYTLADALSYVMLTAPRRVYDTLP 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISI----WQLLNP---FVVGSILLGIFTVLVIN 121
L+ ++ L +SEL I RA G+SI W ++ P +V +L+G + +
Sbjct: 66 MAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVGEY----VA 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
P A + + L Q +GD Q + W + Q D FI + P N + T
Sbjct: 122 PYAENQAQAARSLAQ---GSGDAQSARHGLWHR----QGDEFIHINTVQP-NGLMLGVTR 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D + ++ A A D +LK V + D + +N P+ +++
Sbjct: 174 YRFDDQRHMLTSSFAKEANFKTDYWELKDVSTTHFN----DGRTEVINTPV-----ERWD 224
Query: 242 EQFASRSFYEII---KKMSFSNKSNIFH--------NYRAETQFYFLIVIPLMLVAMTLI 290
+ + +I + +S S N H N R F+ ++ P + VA+ L+
Sbjct: 225 VALSPQLLSTVIMPPESLSISGLWNYAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLM 284
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFML-YTIITIMKSFGKSGILL---PVAAALIPVIL 346
A S RS + + +F+G ++ +T I G S +L P+ A L+P
Sbjct: 285 AISFIFGPLRS----VTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLMPAA- 339
Query: 347 TISLSILILLQKE 359
+L+ + LL++
Sbjct: 340 ACALAGVYLLRRS 352
>gi|289623814|ref|ZP_06456768.1| hypothetical protein PsyrpaN_01505 [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|298485820|ref|ZP_07003898.1| putative membrane protein [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|298159644|gb|EFI00687.1| putative membrane protein [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|330867847|gb|EGH02556.1| hypothetical protein PSYAE_11466 [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330890524|gb|EGH23185.1| hypothetical protein PSYMO_17663 [Pseudomonas syringae pv. mori
str. 301020]
gi|330989712|gb|EGH87815.1| hypothetical protein PLA107_32131 [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331009019|gb|EGH89075.1| hypothetical protein PSYTB_04820 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 353
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 82/372 (22%), Positives = 156/372 (41%), Gaps = 50/372 (13%)
Query: 11 KYYLKTTLYFLLGAM-ILVFVIDLNEIQNQMGELPN-YSISRGAVLAATRVPLIIQQIIP 68
+Y K+ L +L + I++ ++ L ++MG++ + Y+++ P + +P
Sbjct: 6 RYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISDTYTLADALSYVMLTAPRRVYDTLP 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISI----WQLLNP---FVVGSILLGIFTVLVIN 121
L+ ++ L +SEL I RA G+SI W ++ P +V +L+G + +
Sbjct: 66 MAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVGEY----VA 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
P A + + L Q +GD Q + W + Q D FI + P N + T
Sbjct: 122 PYAENQAQAARSLAQ---GSGDAQSARHGLWHR----QGDEFIHINTVQP-NGLMLGVTR 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D + ++ A A D +LK V + D + +N P+ +++
Sbjct: 174 YRFDDQRHMLTSSFAKEANFKTDYWELKDVSTTHFN----DGRTEVINTPV-----ERWD 224
Query: 242 EQFASRSFYEII---KKMSFSNKSNIFH--------NYRAETQFYFLIVIPLMLVAMTLI 290
+ + +I + +S S N H N R F+ ++ P + VA+ L+
Sbjct: 225 VALSPQLLSTVIMPPESLSISGLWNYAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLM 284
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFML-YTIITIMKSFGKSGILL---PVAAALIPVIL 346
A S RS + + +F+G ++ +T I G S +L P+ A L+P
Sbjct: 285 AISFIFGPLRS----VTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLMPAA- 339
Query: 347 TISLSILILLQK 358
+L+ + LL++
Sbjct: 340 ACALAGVYLLRR 351
>gi|313668050|ref|YP_004048334.1| hypothetical protein NLA_7120 [Neisseria lactamica ST-640]
gi|313005512|emb|CBN86948.1| conserved hypothetical integral membrane protein [Neisseria
lactamica 020-06]
Length = 356
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 79/378 (20%), Positives = 160/378 (42%), Gaps = 54/378 (14%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + T+Y LL + L ++ +G+ +Y I A ++P ++
Sbjct: 6 RYIIRQMTAMTVYTLLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPARAYEL 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P TL+ ++ L SEL + +A G+S +LL+ +L F ++ A
Sbjct: 65 MPLATLIGGLLSLGRLAADSELTVIKAGGVSTRKLLS-------VLSQFGLIFALATAAL 117
Query: 127 GEKIGIDLIQQWKD------NGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN-----HI 175
GE I L Q+ ++ NG + W++ +Q+ I +++LP++ I
Sbjct: 118 GEWIAPALNQKAENIKAAAINGKISTGNTGLWLK----EQNSIINIREMLPDHTLLGIKI 173
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKV-KLKKVVEYQYGRIPIDKNSTT-LNIPIK 233
WE + KN+++ +A+ A++ +D +LK + G ++ ++ N+PI
Sbjct: 174 WER------NDKNELVQATEAESAVLNDDGSWQLKNIRRSTLGEDKVETSTAAEENLPIS 227
Query: 234 MDGFQKFSEQFASRSFYEII----KKMSFSN-KSNIFH--NYRAETQFYFL-----IVIP 281
+ R+ E++ +MS + I H N R TQ Y + +V P
Sbjct: 228 VK-----------RNLMEVLLVKPDQMSVGELTAYISHLENNRQNTQIYAIALWHKLVYP 276
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ M L+A + + + +R + + GI G + + + + + P A +
Sbjct: 277 VAAWVMALVALAFTPQTTRHGNMGLKLFGGICLGLLFHFAGRLFGFTARLYGVPPFLAGI 336
Query: 342 IPVILTISLSILILLQKE 359
+P L + I ++ ++E
Sbjct: 337 LPTALFALIGIWLIRKQE 354
>gi|91203264|emb|CAJ72903.1| hypothetical protein kustd2158 [Candidatus Kuenenia
stuttgartiensis]
Length = 357
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 89/370 (24%), Positives = 163/370 (44%), Gaps = 51/370 (13%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY K + T LL +IDL + + E+ S + A P+II Q
Sbjct: 7 RYLLKAFFPTFFLCLLIISGTYVIIDLLQKLDDFLEMGINSFGVASRYYAYLFPVIITQF 66
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P ITLV +V L+R E++ + GIS+++ ILL IF V V A+
Sbjct: 67 FPAITLVAVGIVLVRLSRNKEILAMQVAGISLYR---------ILLPIFVVTVFMGFASF 117
Query: 127 GEKIGI--------DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
G++ I + +QQ + D Q++ + + + + + I K + +
Sbjct: 118 GDQEWIVPRFAEKLEAMQQNTFDSDVQRN-----LLVHDDENNALIRIWKYSNKTQKMDS 172
Query: 179 FTSITID---KKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GR--IPIDKNSTTLNI 230
++ D KK ++ K A+ I N+ L K++++ Y GR P+ + T +
Sbjct: 173 VFILSRDENGKKRFTLNAKKAEW--IGNNTWVLSKILKHVYDERGRWVAPVHRLDTLEFV 230
Query: 231 ----PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI-FHNYRAETQFYFLIV---IPL 282
P+++ + S + E+ +K + K+ + FH+ A T + +++ IPL
Sbjct: 231 SSVTPLELGKKKLDSSLLSLEQLNELCEKEPDNPKNKVLFHSRIAYTLTHIVLLFLGIPL 290
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+V ++ ++ L S I+A G+F Y + I + G +G++ PV AA +
Sbjct: 291 -VVGFERMSKNIFLRVSLC-----ILACGVF-----YAVSFICSNLGNTGMVHPVLAAWM 339
Query: 343 PVILTISLSI 352
P++L S+ I
Sbjct: 340 PIVLFGSVGI 349
>gi|114798132|ref|YP_760297.1| putative permease [Hyphomonas neptunium ATCC 15444]
gi|114738306|gb|ABI76431.1| putative permease [Hyphomonas neptunium ATCC 15444]
Length = 351
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 132/312 (42%), Gaps = 29/312 (9%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW---QLLNPFVVGSILLGI 114
R+P + +I+ F L+ ++ + +L R +ELV A GIS++ + L P V + +
Sbjct: 56 RLPALFDRIVVFAFLLAALLTYASLIRRNELVAISAAGISVFGQMRTLIPVVFLTAVAAA 115
Query: 115 FTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE-- 172
F + + P A+ + W Q+ +P +++++ K L E
Sbjct: 116 FIIDTVGPPASRS-------LLAWLGPEALQEDAQVP--------EELWLSDGKFLIELK 160
Query: 173 NHIWEDFTSITIDKKNK---IIHRKDADLAIIYNDKVKLKKVVEYQY-GRIPIDKN-STT 227
+ E+ T ITI ++N ++ A+ A + L + ++ G P D T+
Sbjct: 161 SMQAEELTGITIFERNAEGAVVAITTAETARPADGGWALSGTGQRRFDGEPPTDMTFWTS 220
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
P + A + + + ++ + + A +F ++PL V
Sbjct: 221 PQTPESLQLLLSPPRDLAISNLIALSEMRGSGSRPSGAYELWALNRF----LLPLTAVGF 276
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
L+A V + R + I VA G+ GF + I+K+ ++G + P+ A +P++
Sbjct: 277 LLLAVPVMQVYGRRSNADIAVAAGVAVGFFYMVVDGILKTLAENGSISPILAVALPILAL 336
Query: 348 ISLSILILLQKE 359
S+ + L++E
Sbjct: 337 FLGSMWLALERE 348
>gi|332160138|ref|YP_004296715.1| hypothetical protein YE105_C0514 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318607296|emb|CBY28794.1| putative Permease [Yersinia enterocolitica subsp. palearctica Y11]
gi|325664368|gb|ADZ41012.1| hypothetical protein YE105_C0514 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859698|emb|CBX70034.1| lipopolysaccharide export system permease protein lptG [Yersinia
enterocolitica W22703]
Length = 356
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/377 (22%), Positives = 159/377 (42%), Gaps = 39/377 (10%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L T L L + L +I + ++G+ +YS + + +P
Sbjct: 1 MFGVLDRYIGRTILNTILMTLFMLVSLSGIIKFVDQLRKVGQ-GDYSAASAGMYTLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + + FI +++ + ++ T
Sbjct: 120 EWVAPQGEQMARNFRAQQMYGGSLLSTQSGLWAKDGSD----FIYIQRVSGD----KELT 171
Query: 181 SITI---DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ I DK+++++ + A A ++ +L +V E + L+ P K+ G
Sbjct: 172 GVNIYHFDKQDRLLSVRYAATATFEDNLWRLSQVDE------------SDLSNPNKVTGS 219
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKS---NIFHNY------------RAETQFYFLIVIPL 282
Q + ++ + E + ++ + S + H+Y R E + I P
Sbjct: 220 QTLTGEWKTNLTPEKLGVVAMNPDSLSISGLHDYSKYLRQSGQESSRYELNMWGKIFAPF 279
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ M L+A S RS + V GIF GF+ Y + I + PV AL+
Sbjct: 280 SVAVMMLMALSFIFGPLRSVPMGVRVVTGIFFGFVFYVLDQIFGPLSLVYNIPPVIGALL 339
Query: 343 PVILTISLSILILLQKE 359
P IL + +S+ +LL++
Sbjct: 340 PSILFLLISVYLLLKRR 356
>gi|39997021|ref|NP_952972.1| hypothetical protein GSU1923 [Geobacter sulfurreducens PCA]
gi|39983909|gb|AAR35299.1| membrane protein, putative [Geobacter sulfurreducens PCA]
gi|298506038|gb|ADI84761.1| membrane protein, YjgQ-related [Geobacter sulfurreducens KN400]
Length = 358
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/349 (20%), Positives = 142/349 (40%), Gaps = 25/349 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAA--TRVPL 61
IL RY YLK L + + VID E ++G L + ++ ++P
Sbjct: 3 ILTRYIAGAYLKILGLCLASFVAIYLVIDFLE---KIGRLLRFQPRWIDIIQYFICKLPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II Q+IP L+ ++ L+R SE+V R G+ + ++ P +V + + + T+
Sbjct: 60 IITQVIPLAVLMSTLLTLGMLSRNSEIVAMRGCGVGLGRISAPLIVIAAAVSLLTIFSNE 119
Query: 122 PIATSGEK----IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ S + + LI++ N ++++I W + + + A+ P
Sbjct: 120 FVLPSSYRQMRYVDQVLIRKQGTNTFFRQNNI--W----HKDESAIMMARVFDPGRQALR 173
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS-----TTLNIPI 232
T + + R DA + K V ++ + LN+ I
Sbjct: 174 GITLWRFSDGMRPVSRIDAAEGTWDGARWTFKTVTVRGLAGPSVETRTLASLPAELNLKI 233
Query: 233 K-MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + K+++ + ++K+ K+ + R E Q + I +P + M +
Sbjct: 234 EDLKVVDKYADNMGFFKLRDYVRKL----KAGGYDTTRYEAQMHSKISLPFASLIMAFLG 289
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+L RS+ + + I GF + +I+ SFG++GIL P+ +A
Sbjct: 290 IPFALRGGRSSGVALGITASIGIGFAYFITNSILISFGQTGILPPLISA 338
>gi|189219653|ref|YP_001940294.1| permease [Methylacidiphilum infernorum V4]
gi|189186511|gb|ACD83696.1| Predicted permease [Methylacidiphilum infernorum V4]
Length = 395
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 81/375 (21%), Positives = 154/375 (41%), Gaps = 58/375 (15%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDL-----NEIQNQM--GELPNYSISRGAV 53
M IL+RY FK +L L+ ++ LV + DL + IQN+ G++ +Y ++
Sbjct: 26 MKKILFRYLFKGFLFPLLFTIVAFCSLVIIADLFGSLEDFIQNKATPGQIFHYYLAY--- 82
Query: 54 LAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG 113
+P +I I+P +L ++ L+R EL+ +A G+ + ++ PF++ +L+
Sbjct: 83 -----LPAVIIMIVPPASLFSSLYFLMQLHRHGELIAMQACGVPLQKIFTPFLIIGVLVT 137
Query: 114 IF-TVLVINPIATS------------GEKIGIDLIQQ--WKDNGDKQKSDIIPWMQISNP 158
+F L + P S G K + ++ +K+ +K+ I N
Sbjct: 138 LFLAALQLGPGGNSQAKRDQILEDIKGNKTAVHALRGIIYKEEAEKRIWYFRQLDFIKNQ 197
Query: 159 QQDIFI--------GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKK 210
+D+ + KK W+D I + ++R D D A N+ ++
Sbjct: 198 GEDVEVVVQENSGKDLKKYFARKAAWKDNHWIFYE-----VNRIDYDSA---NNFLQ--- 246
Query: 211 VVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA 270
+ +P+ +T P +M +K + +++I K S + + Y
Sbjct: 247 --STYFETLPLVSWNTP---PRQMVALEKKPRDLNASELWKLINKPR-SIQKTLLAPY-- 298
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
+ QFY L+ PL ++ + LI + S S P V +F Y I + G+
Sbjct: 299 QVQFYTLVAEPLTILVLLLIGLAEGGRLS-SRHPTAGVFNALFILIAFYLIFHFFQILGQ 357
Query: 331 SGILLPVAAALIPVI 345
+ P A P++
Sbjct: 358 GSRIPPAVAIFSPLV 372
>gi|253702061|ref|YP_003023250.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
gi|251776911|gb|ACT19492.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
Length = 360
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 149/351 (42%), Gaps = 27/351 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVF-VIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY + YLK L LG+ + ++ V+D E ++ S A+ T++P +
Sbjct: 3 ILTRYIARAYLKM-LSLCLGSFLTIYLVVDFMEKVSRFTR-AGASWKHLALFFITKIPEM 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSIL--LGIFTV--L 118
I P L+ ++ L+ TSEL R+ G+S++++ P +V S+L LG+ +
Sbjct: 61 IIDAAPLAVLMATLLTLGTLSLTSELTAIRSCGVSLFRISLPILVISVLMSLGVLAIGEF 120
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP--QQDIFIGAKKILPENHIW 176
V+ I LIQ+ + ++ +I W + + +F A+ L +W
Sbjct: 121 VLPKSFAQRTYIQEVLIQKKSASAFFRQQNI--WFREEGTVLRASLFEPARNELKGITLW 178
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY--GRIPIDKNSTTLNI---- 230
D T + + R +ADLA++ L+ V Q+ G + + L +
Sbjct: 179 -DLQPGT----GEPLKRTEADLALLGPKGWVLRDAVVRQFRDGEVSATQKYRELPVQLQL 233
Query: 231 -PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
P + K+S+ + +K+ S + R TQ + I +P M
Sbjct: 234 KPADLKTLGKYSDSMSLVELNRYCRKLRASG----YDPTRYVTQMHSRISMPFGCAVMAF 289
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ +L RS+ V I GF+ + +++ S G+ G+L PV AA
Sbjct: 290 LGIPFALRGGRSSGIAFGVGLSIGVGFLYVIVNSVIISVGQVGLLPPVVAA 340
>gi|87121691|ref|ZP_01077578.1| permease YjgP/YjgQ [Marinomonas sp. MED121]
gi|86162942|gb|EAQ64220.1| permease YjgP/YjgQ [Marinomonas sp. MED121]
Length = 353
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 161/368 (43%), Gaps = 44/368 (11%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G++W +F ++ LLG L +V+ E ++ E Y+IS + R+P
Sbjct: 11 GVVWAFF------AVVFILLG---LDYVLTFIEQVKRISEF--YTISNLLEVLLLRLPSK 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL----LNPFVVGSILLGIFTVL 118
+ IP +L+ +V L TSEL + RA GI IW++ + P ++ S L+G+
Sbjct: 60 FAEYIPIASLIGTLVGLGALASTSELTVIRAAGIPIWRIGWSAIKPILIIS-LIGVGISE 118
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSD--IIPWMQISNPQQDIFIGAKKILPENHIW 176
I P A +LI+ K +Q SD I + I + ++ IFIGA +
Sbjct: 119 FIAPNADQRA----NLIENLK---KQQTSDNIISGGVWIRSEEKYIFIGAA-----DQKG 166
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDKNST---TLNIP 231
+ + KN+ + Y D+ L +V Q+ I+ N+T +L +
Sbjct: 167 TLYNVKVFNSKNQTLQSTQIAKTAQYKTADEWTLNQVTNTQFLADKIESNNTNFESLTMT 226
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K + +++ + S + I ++ ++ + R E +F+ + P+ +A+ LIA
Sbjct: 227 FKPEHLYLATQEPEALSLSQSISYQNYLEGQDL-NTSRYELEFWTKALRPVASIALVLIA 285
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTII-TIMKSFGKSGILL---PVAAALIPVILT 347
S RS+ + IFSG M+ I + FG+ + P+ LIP+ +
Sbjct: 286 LSSVFGPLRSS----TMGSRIFSGVMIGIIFQNGLNLFGRMSLAADFSPLLGVLIPIAIC 341
Query: 348 ISLSILIL 355
+++ L L
Sbjct: 342 LAIGTLQL 349
>gi|91774576|ref|YP_544332.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
gi|91708563|gb|ABE48491.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
Length = 356
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 151/364 (41%), Gaps = 34/364 (9%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + + + + +L + + DL + +G+ NY IS+ + P + ++
Sbjct: 6 RYLAQEIVSSIMLIMLALLAMFSFFDLIQELESLGK-GNYGISKVLLYVLLSAPGHVYEV 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P LV + +R SEL+I R GISI ++ + ++ + T LV IA
Sbjct: 65 VPVAVLVGTMYALGQFSRYSELIILRVSGISIRKIAFSLLRVGLVFAVITFLVGELIAPM 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN-----HIWEDFTS 181
EK + Q D+ Q W++ N F+ + ++P+ HI+E
Sbjct: 125 SEKAAQRIRIQATDSVVAQDFRSGLWVKDGNS----FVNVQNVMPDASLMDIHIYE---- 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS------TTLNIPIKMD 235
D + ++ +A + L +V + + I N +L P ++
Sbjct: 177 --FDNEFRLRTISNAKEGSFDGNSWNLHQVTQTHFEEQKIRTNVFQEATWQSLIRPELLN 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
E+ ++ + Y I ++ SNK R + + ++ PL + M ++A
Sbjct: 235 VLLVVPEKMSAWNLYFYINHLA-SNKQK---TSRHQIALWSKMIYPLACLVMVILA---- 286
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIM-KSFGKSGIL---LPVAAALIPVILTISLS 351
L F Q + IFSG ML + ++ + F G+L P+ +A++P +L ++
Sbjct: 287 LPFGFLQQRSSSASTKIFSGIMLGIVYQVLNRVFVHLGLLNDWSPLFSAVMPTLLFMAAG 346
Query: 352 ILIL 355
I +L
Sbjct: 347 IFML 350
>gi|123440875|ref|YP_001004866.1| hypothetical protein YE0502 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122087836|emb|CAL10622.1| putative membrane protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 356
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/377 (21%), Positives = 159/377 (42%), Gaps = 39/377 (10%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L T L L + L +I + ++G+ +YS + + +P
Sbjct: 1 MFGVLDRYIGRTILNTILMTLFMLVSLSGIIKFVDQLRKVGQ-GDYSAASAGMYTLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + + FI +++ + ++ T
Sbjct: 120 EWVAPQGEQMARNFRAQQMYGGSLLSTQSGLWAKDGSD----FIYIQRVSGD----KELT 171
Query: 181 SITI---DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ I D++++++ + A A ++ +L +V E + L+ P K+ G
Sbjct: 172 GVNIYHFDQQDRLLSVRYAATATFEDNLWRLSQVDE------------SDLSNPNKVTGS 219
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKS---NIFHNY------------RAETQFYFLIVIPL 282
Q + ++ + E + ++ + S + H+Y R E + I P
Sbjct: 220 QTLTGEWKTNLTPEKLGVVAMNPDSLSISGLHDYSKYLRQSGQESSRYELNMWGKIFAPF 279
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ M L+A S RS + V GIF GF+ Y + I + PV AL+
Sbjct: 280 SVAVMMLMALSFIFGPLRSVPMGVRVVTGIFFGFVFYVLDQIFGPLSLVYSIPPVIGALL 339
Query: 343 PVILTISLSILILLQKE 359
P IL + +S+ +LL++
Sbjct: 340 PSILFLLISVYLLLKRR 356
>gi|118580062|ref|YP_901312.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
gi|118502772|gb|ABK99254.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
Length = 359
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/316 (19%), Positives = 147/316 (46%), Gaps = 20/316 (6%)
Query: 38 NQMGELPNYSISRGAVLA-----ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
+ M +P + +GA++ A ++P +I Q F L+ ++ L R+SE+V R
Sbjct: 31 DMMERIPRFLRVQGALVDIARFFAWKLPEMIGQTAAFSVLMATLLTLGLLTRSSEIVAMR 90
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLVINPIA-TSGEKIG-IDLIQQWKDNGDK--QKSD 148
+ GIS+ ++ P ++ + + ++ I S E++ I+ + K G ++++
Sbjct: 91 SCGISLPRISLPMLLLGGGVSLLLLVNAELIVPDSYERMSRIERVDIKKQAGSAVFKRNN 150
Query: 149 IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKL 208
I W + N + A+ P + + ++D+ + R DA+ A + + L
Sbjct: 151 I--WFRSDNR----IMQARLFDPRSQVLRGVVVWSLDQYTNPLSRLDAESAELRGESWLL 204
Query: 209 KKVV--EYQYGRIPIDKN--STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI 264
+ V E+ G + + + ++++ +K+D + + + SF ++ ++ + + +
Sbjct: 205 RGVELKEFTAGEGVVVRKLPTRSIDLNLKVDDLRVLDKNADNLSFGKL-REYADNLRKGG 263
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
+ +++ T + PL + M ++ +L SRS + V + GF + + +
Sbjct: 264 YEDFKYRTMMHTKFAAPLSALVMVILGIPFALRGSRSGGVAMGVGASVTIGFAYFVVNAV 323
Query: 325 MKSFGKSGILLPVAAA 340
+ S+G+SG+L P+ AA
Sbjct: 324 LLSYGRSGVLPPLVAA 339
>gi|290968957|ref|ZP_06560492.1| YjgP/YjgQ family [Megasphaera genomosp. type_1 str. 28L]
gi|290780913|gb|EFD93506.1| YjgP/YjgQ family [Megasphaera genomosp. type_1 str. 28L]
Length = 362
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/323 (20%), Positives = 134/323 (41%), Gaps = 45/323 (13%)
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I+ P L+ ++ F L+ SE+++ RA G +L P +V + + + T
Sbjct: 59 PSIVVLTFPMSVLLGALMAFGRLSAASEIIVMRAGGQHFVRLAMPVLVAAFFISLGTTAF 118
Query: 120 ---INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ----ISNPQQDIFIGAKKILPE 172
+ P A + I+ ++ + +P Q I N G
Sbjct: 119 NEFVVPRANNAYNRIIN---------EEIRHHALPVSQEHVIIKNVHGQNIYGLLYARQY 169
Query: 173 NHIWEDFTSITIDK--KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT--- 227
+ ++F IT+ + +++++ + AD A K KK + +Q + N T
Sbjct: 170 DGTEKEFRDITVQEFEQDRLVRVEKADRA-----KWNGKKWIVHQGSIYDVSSNDNTSRT 224
Query: 228 ----------LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ P K+ QK E+ R + I+ ++ ++ + + + Y
Sbjct: 225 MTFENQELPFMQRPEKVQEAQKKPEELTIRELRQQIRVLT----AHGVDVNKLKVEMYNR 280
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI--FSGFMLYTIITIMKSFGKSGILL 335
+PL + LI A + L+ R + + +GI + F+ Y+I+T+ + G G +
Sbjct: 281 FALPLASLVCALIGAPLGLQKQRGSSS---IGFGISVVTIFIYYSIMTLADALGNGGTIA 337
Query: 336 PVAAALIPVILTISLSILILLQK 358
P AAA +P I+ S+ I ++++K
Sbjct: 338 PAAAAFLPDIICGSVGIFLMIRK 360
>gi|46446271|ref|YP_007636.1| hypothetical protein pc0637 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399912|emb|CAF23361.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 383
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQN--QMGELPNYSISRGAVLAATR 58
M ILWRY ++LK + + ++ + L+EI N +G IS + A +
Sbjct: 1 MIPILWRYSINHFLKIVFACVFAFISILLTMRLDEIANFAALGA----PISYILLFAFYQ 56
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P I+ +P L+ +++ L+ T EL RA G ++ LL P ++ + L IF
Sbjct: 57 IPYILPIALPLSCLIASLIFVQRLSNTHELTALRACGFALKDLLAPILLTAAFLTIFNFW 116
Query: 119 VINPIAT 125
+++ +AT
Sbjct: 117 IVSEVAT 123
>gi|71737643|ref|YP_273426.1| hypothetical protein PSPPH_1159 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71558196|gb|AAZ37407.1| membrane protein, putative [Pseudomonas syringae pv. phaseolicola
1448A]
gi|320322887|gb|EFW78978.1| hypothetical protein PsgB076_20532 [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329804|gb|EFW85792.1| hypothetical protein PsgRace4_11126 [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 353
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 81/372 (21%), Positives = 156/372 (41%), Gaps = 50/372 (13%)
Query: 11 KYYLKTTLYFLLGAM-ILVFVIDLNEIQNQMGELPN-YSISRGAVLAATRVPLIIQQIIP 68
+Y K+ L +L + I++ ++ L ++MG++ + Y+++ P + +P
Sbjct: 6 RYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISDTYTLADALSYVMLTAPRRVYDTLP 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISI----WQLLNP---FVVGSILLGIFTVLVIN 121
L+ ++ L +SEL I RA G+SI W ++ P +V +L+G + +
Sbjct: 66 MAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVGEY----VA 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
P A + + L Q +GD Q + W + Q + FI + P N + T
Sbjct: 122 PYAENQAQAARSLAQ---GSGDAQSARHGLWHR----QGEEFIHINTVQP-NGLMLGVTR 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D + ++ A A D +LK V + D + +N P+ +++
Sbjct: 174 YRFDDQRHMLTSSFAKEANFKTDYWELKDVSTTHFN----DGRTEVINTPV-----ERWD 224
Query: 242 EQFASRSFYEII---KKMSFSNKSNIFH--------NYRAETQFYFLIVIPLMLVAMTLI 290
+ + +I + +S S N H N R F+ ++ P + VA+ L+
Sbjct: 225 VALSPQLLSTVIMPPESLSISGLWNYAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLM 284
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFML-YTIITIMKSFGKSGILL---PVAAALIPVIL 346
A S RS + + +F+G ++ +T I G S +L P+ A L+P
Sbjct: 285 AISFIFGPLRS----VTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLMPAA- 339
Query: 347 TISLSILILLQK 358
+L+ + LL++
Sbjct: 340 ACALAGVYLLRR 351
>gi|326565139|gb|EGE15330.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis 103P14B1]
gi|326572842|gb|EGE22827.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis CO72]
gi|326574664|gb|EGE24600.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis 101P30B1]
Length = 369
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 83/377 (22%), Positives = 162/377 (42%), Gaps = 42/377 (11%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN----YSISRGAVLAATRVPLIIQQI 66
KY +++ L + GA++ ++++ + + + EL N Y+++ + R P + Q
Sbjct: 8 KYVIRSALLAMAGAVVGLWLVQM--VFAYLAELDNISETYTLTDALLFILYRSPYFLVQF 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISI-----WQLLNPFVVGSILLGI--FTVLV 119
IP TL+ ++ L SEL++ RA G+SI W +L + +I LG+ F +
Sbjct: 66 IPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGVNQFVLPT 125
Query: 120 INPIATS--GEKIGIDLIQ---QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
N AT+ + I LI W N D D++ IS + +G K +
Sbjct: 126 ANQYATAIRADTIYDKLITIDGYWSVNHDGDSQDVV---YISYADNEGGLGEVK----RY 178
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK----LKKVVEYQYGRIPIDKNSTT--- 227
+D I K ++ +D ++ K + L + E G + + +
Sbjct: 179 QLKDGQLIAALKAKSGVYLPQSD-DVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKI 237
Query: 228 LNIPIKMDG---FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
L +PI K E + S Y + M+ ++ H E F+ ++ P +
Sbjct: 238 LTLPIAPTDVYLLTKEPEDLSLSSLYAHRQLMAHQGTRSLRH----ELAFWQKLLSPFAV 293
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF-GKSGILLPVAAALIP 343
+++ L+A+S RS + V + +G +L++ +T + F + L P+ AL+P
Sbjct: 294 LSLVLVASSFVFGSLRSQGLGLRVVLALLTG-LLFSYLTDLTGFVALATGLSPLLMALVP 352
Query: 344 VILTISLSILILLQKED 360
++L+ + +L +K
Sbjct: 353 IVLSAMAGMYLLNRKSS 369
>gi|323144744|ref|ZP_08079321.1| lipopolysaccharide export system permease protein LptG
[Succinatimonas hippei YIT 12066]
gi|322415495|gb|EFY06252.1| lipopolysaccharide export system permease protein LptG
[Succinatimonas hippei YIT 12066]
Length = 355
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 133/318 (41%), Gaps = 34/318 (10%)
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGI-------SIWQLLNPFVVG 108
A VP I+ P L+ ++ NL RTSEL++ ++IGI S + + P ++
Sbjct: 56 ALEVPGIVVLFFPVAVLLGGVIALGNLARTSELIVMQSIGISRTGIVLSALKTVIPLILV 115
Query: 109 SILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK 168
+ LG F V + E+ + + NG+ ++ W++ + FIG +
Sbjct: 116 IVCLGEFVVPRV-------EQYAENRLNFASSNGNLSVTNDGLWLR----EGHSFIGIRY 164
Query: 169 ILPENHIWEDFTSITIDKKN-KIIHRKDADLAIIYND------KVKLKKVVEYQYGRIPI 221
+ + + D ++ KN K R + +Y+D V+ E + R +
Sbjct: 165 TMSDGSLL-DIVRYEVEGKNLKAFSRAKSG---VYSDGKWVMRDVRKTVFAENKVIRTSL 220
Query: 222 DKNSTTLNI-PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+ +LN+ P +++ +R + I + +N+ +YR E Y +
Sbjct: 221 AEEKWSLNLTPERVEVVGVKGYNLTARGLIDYINYLEENNQDA--SSYRLE--LYNKFMS 276
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
PL ++ M L+AAS RS V GI GF Y I F + P+ A
Sbjct: 277 PLTMIVMLLLAASTVFGPLRSMTMGARVLAGIALGFGFYLANQIGAPFALVYGIPPILGA 336
Query: 341 LIPVILTISLSILILLQK 358
+P ++ + L+I +L +K
Sbjct: 337 SLPTLVFMLLAIALLRRK 354
>gi|78186277|ref|YP_374320.1| hypothetical protein Plut_0389 [Chlorobium luteolum DSM 273]
gi|78166179|gb|ABB23277.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
Length = 360
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 82/376 (21%), Positives = 160/376 (42%), Gaps = 37/376 (9%)
Query: 4 ILWRYFFKYYLKT----TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
IL RY F+ ++KT +L F+ M++ V +L++ ++ N A +
Sbjct: 3 ILDRYIFRQFVKTFIFTSLAFVALFMLIHMVENLDDFMDK-----NQGFEAIAQYYLFAI 57
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV-- 117
P I P +L+ I+V L +SEL R+ G+S+ QLL PF++G +++ +
Sbjct: 58 PQTILITSPVSSLLAAILVAGKLAVSSELPAIRSAGVSMGQLLYPFLLGGMIISTINLTN 117
Query: 118 -LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
I P AT +L + D++ N I +I+ +
Sbjct: 118 SFWIAPAATLRNN-NFELTELGHQRRDEEG---------GNSNLHILEPGNRIITLGSLN 167
Query: 177 EDFTS---ITIDK--KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTL 228
D +S ++I++ + I+ R DAD + YN + K V+E R+ D + T
Sbjct: 168 PDMSSAREVSIEQFSQKGIVSRSDAD-GMRYNPEKK-AWVLENAAERMFEDGSERFWTEP 225
Query: 229 NIPIKMD-GFQKFSEQFASRSFYEIIKK---MSFSNKSNIFHNYRAETQFYFLIVIPLML 284
+P+++ Q +E I + +S + R+ + + + +P
Sbjct: 226 MLPVQLHLSLQSLAELNLRPDEMNIARHWQYLSEKKHAGFAGLERSSVKLHTKLSLPFAS 285
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ + +I +S + R I +F+GF+ + + +FG +G++ P+ AA +P
Sbjct: 286 LIIIIIGVPLSAKKKRGGLAAEI-GISLFAGFLFLGLQKTIATFGYNGVMPPMLAAWLPN 344
Query: 345 ILTISLSILILLQKED 360
+L + + +I D
Sbjct: 345 LLFLGVGYVIYRYSPD 360
>gi|94987323|ref|YP_595256.1| permease [Lawsonia intracellularis PHE/MN1-00]
gi|94731572|emb|CAJ54935.1| predicted permeases [Lawsonia intracellularis PHE/MN1-00]
Length = 366
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 138/305 (45%), Gaps = 24/305 (7%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
+ P I QI+PFI L+ ++ + + EL+ +A GIS ++ + ++ S+ G
Sbjct: 56 KTPFAIAQILPFIFLISTVIQLCIMAKKKELIALQAGGISFTRIASIIIIASLFWGTIQF 115
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKS---DIIPWMQISNPQQDIFIGAKKILPENH 174
+ I T+ + + + Q++ N K K+ DI W N +I + L +
Sbjct: 116 IFSEYIGTACGRKSLQIWQEYVHNQHKSKTILKDI--WFTDKN-----WIVSINTLKPDD 168
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAI-IYNDKVKLKKVVEYQ---YGRIPIDKNSTTLNI 230
F++ +DK I + L+ I+N++ LKKV + Y + + + + T N
Sbjct: 169 TGSGFSAYLLDKNGLTIEKIIWALSFSIHNNEWILKKVAVSEPALYSQEMLQELTLTFNQ 228
Query: 231 PIKMDGFQKFSEQFASRSFYEI---IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ F + + SF+E+ I K+ S SN+ +T ++ + LV M
Sbjct: 229 SSETLKFIQNNNAPQQLSFWELRETIHKLERSG-SNV---ELLKTSWHTKLSYSFSLVVM 284
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
L+A ++ + N I +A+ + F+ + TI S G GI+ P+ A I ++
Sbjct: 285 ALLATTI---VAWKNNIYIAIAFSLLYTFIYNALNTIGISLGNKGIISPIIGAWIANLVI 341
Query: 348 ISLSI 352
+S++I
Sbjct: 342 MSVTI 346
>gi|251791279|ref|YP_003006000.1| permease YjgP/YjgQ family protein [Dickeya zeae Ech1591]
gi|247539900|gb|ACT08521.1| permease YjgP/YjgQ family protein [Dickeya zeae Ech1591]
Length = 356
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 79/363 (21%), Positives = 145/363 (39%), Gaps = 17/363 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY K T + L + L +I + ++G+ YS+ + VP I
Sbjct: 4 VLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GGYSVMGAGLYTLLSVPKDI 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ + +
Sbjct: 63 EIFFPMAALLGALLGLGTLATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIGEWV 122
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A +GE++ + Q G + W + N F+ +++ E+ +
Sbjct: 123 APAGEQMARNYRSQMMYGGSMLSTQSGLWAKDGND----FVYIQRVAGESELL-GVNIYH 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-------GRIPIDKNSTTLNIPIKMDG 236
DK+NK++ + A A+ N KL +V E G + T P K+
Sbjct: 178 FDKQNKLLSVRYAASAVYENGGWKLSQVEESDLSDGKQIGGSQTVSGEWKTNLTPDKLGV 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + R Y+ I + S + R + + + PL + M L+A S
Sbjct: 238 VALEPDALSIRGLYDYINYLRQSGQ----EASRYQLNMWSKLFAPLSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + + GI GF+ Y + I + PV A +P L + +SI++LL
Sbjct: 294 GPLRSVPAGMRIVIGISFGFLFYVLDQIFGPLSLVYHIPPVLGASLPSALFLFISIMLLL 353
Query: 357 QKE 359
++
Sbjct: 354 KRR 356
>gi|107103347|ref|ZP_01367265.1| hypothetical protein PaerPA_01004416 [Pseudomonas aeruginosa PACS2]
Length = 355
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 78/357 (21%), Positives = 142/357 (39%), Gaps = 52/357 (14%)
Query: 24 AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLN 83
A++ F+ +LN+I +Y I P ++P L+ +V L
Sbjct: 27 ALLFAFIDELNDIS------ASYGIGDALRFIFLTAPRRAYDMLPMAALIGCLVGLGTLA 80
Query: 84 RTSELVISRAIGIS----IWQLLNPFVV---GSILLGIFTVLVINPIATSGEKIGIDLIQ 136
SEL I RA G+S +W ++ P +V IL+G + IA SG +
Sbjct: 81 SNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVGEYVAPWTENIAQSGRALA----- 135
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
+ GD Q S W + Q +I + P N + T D++ + A
Sbjct: 136 --QGGGDSQSSKRGLWHR----QGREYIHINAVQP-NGVLYGVTRYRFDEQRGLESASFA 188
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEII--- 253
A D +L++V P +K S + +P +++ Q + + ++
Sbjct: 189 KRARFETDHWQLEEVTTTLLH--PREKRSEVIKLPT-----ERWDAQLSPQLLNTVVMEP 241
Query: 254 KKMSFSNKSNIFH--------NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ +S S H N R F+ ++ PL+ A+ L+A S RS
Sbjct: 242 EALSISGLWQYIHYLADQGLNNNRYWLAFWTKVLQPLVTAALVLMAISFIFGPLRS---- 297
Query: 306 IIVAYGIFSGFMLYTIITIMKS-FGKSGILL---PVAAALIPVILTISLSILILLQK 358
+ + IF+G ++ + I + G S ++ P+ A +IP + +L+ + LL++
Sbjct: 298 VTLGQRIFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVVIPASIC-ALAGVWLLRR 353
>gi|165936803|ref|ZP_02225370.1| putative permease [Yersinia pestis biovar Orientalis str. IP275]
gi|167420748|ref|ZP_02312501.1| putative permease [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|165915452|gb|EDR34062.1| putative permease [Yersinia pestis biovar Orientalis str. IP275]
gi|166961554|gb|EDR57575.1| putative permease [Yersinia pestis biovar Orientalis str.
MG05-1020]
Length = 358
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 84/382 (21%), Positives = 160/382 (41%), Gaps = 47/382 (12%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L T L LL + L +I + ++G+ +YS + + +P
Sbjct: 1 MFGVLDRYIGRTILNTILMTLLMLVSLSGIIKFVDQLRKVGQ-GDYSAASAGMYTILSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIAVFFPMAALLGALLGLGTLASRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE+ + Q G + W + + FI +++ E+ + T
Sbjct: 120 EWVAPQGEQTARNFRTQQMYGGSLLSTQSGLWAKDGSD----FIYIQRVSGESEL----T 171
Query: 181 SITI---DKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ I DK+++++ + A A D +L +V E + L+ P ++
Sbjct: 172 GVNIYHFDKEDRLLSVRYAATATYEKDNKTWRLSQVDE------------SDLSNPTQVT 219
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKS---NIFHNY------------RAETQFYFLIVI 280
G Q + ++ + E + ++ S + H+Y R E + +
Sbjct: 220 GSQTLTGEWKTNLTSEKLGVVAMDPDSLSISGLHDYSKYLQQSGQESNRYELSMWSKVFA 279
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL---PV 337
P + M L+A S RS + V GIF GF+ Y + + FG+ ++ P+
Sbjct: 280 PFSVAVMMLMALSFIFGPLRSVPMGVRVVTGIFFGFVFYVLDQV---FGRLSLVYGIPPM 336
Query: 338 AAALIPVILTISLSILILLQKE 359
AL+P +L + +SI +LL++
Sbjct: 337 LGALLPSMLFLLISICLLLKRR 358
>gi|254242518|ref|ZP_04935840.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|126195896|gb|EAZ59959.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
Length = 355
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 78/357 (21%), Positives = 142/357 (39%), Gaps = 52/357 (14%)
Query: 24 AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLN 83
A++ F+ +LN+I +Y I P ++P L+ +V L
Sbjct: 27 ALLFAFIDELNDIS------ASYGIGDALRFIFLTAPRRAYDMLPMAALIGCLVGLGTLA 80
Query: 84 RTSELVISRAIGIS----IWQLLNPFVV---GSILLGIFTVLVINPIATSGEKIGIDLIQ 136
SEL I RA G+S +W ++ P +V IL+G + IA SG +
Sbjct: 81 SNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVGEYVAPWTENIAQSGRALA----- 135
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
+ GD Q S W + Q +I + P N + T D++ + A
Sbjct: 136 --QGGGDSQSSKRGLWHR----QGREYIHINAVQP-NGVLYGVTRYRFDEQRGLESASFA 188
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEII--- 253
A D +L++V P +K S + +P +++ Q + + ++
Sbjct: 189 KRARFETDHWQLEEVTTTLLH--PREKRSEVVKLPT-----ERWDAQLSPQLLNTVVMEP 241
Query: 254 KKMSFSNKSNIFH--------NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ +S S H N R F+ ++ PL+ A+ L+A S RS
Sbjct: 242 EALSISGLWQYIHYLADQGLNNNRYWLAFWTKVLQPLVTAALVLMAISFIFGPLRS---- 297
Query: 306 IIVAYGIFSGFMLYTIITIMKS-FGKSGILL---PVAAALIPVILTISLSILILLQK 358
+ + IF+G ++ + I + G S ++ P+ A +IP + +L+ + LL++
Sbjct: 298 VTLGQRIFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVVIPASIC-ALAGVWLLRR 353
>gi|15599022|ref|NP_252516.1| hypothetical protein PA3827 [Pseudomonas aeruginosa PAO1]
gi|116051855|ref|YP_789302.1| hypothetical protein PA14_14510 [Pseudomonas aeruginosa UCBPP-PA14]
gi|218889889|ref|YP_002438753.1| putative permease [Pseudomonas aeruginosa LESB58]
gi|254236731|ref|ZP_04930054.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|296387657|ref|ZP_06877132.1| putative permease [Pseudomonas aeruginosa PAb1]
gi|313109246|ref|ZP_07795214.1| hypothetical protein PA39016_001710055 [Pseudomonas aeruginosa
39016]
gi|9950002|gb|AAG07214.1|AE004800_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|115587076|gb|ABJ13091.1| putative permease [Pseudomonas aeruginosa UCBPP-PA14]
gi|126168662|gb|EAZ54173.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|218770112|emb|CAW25874.1| putative permease [Pseudomonas aeruginosa LESB58]
gi|310881716|gb|EFQ40310.1| hypothetical protein PA39016_001710055 [Pseudomonas aeruginosa
39016]
Length = 355
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 78/357 (21%), Positives = 142/357 (39%), Gaps = 52/357 (14%)
Query: 24 AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLN 83
A++ F+ +LN+I +Y I P ++P L+ +V L
Sbjct: 27 ALLFAFIDELNDIS------ASYGIGDALRFIFLTAPRRAYDMLPMAALIGCLVGLGTLA 80
Query: 84 RTSELVISRAIGIS----IWQLLNPFVV---GSILLGIFTVLVINPIATSGEKIGIDLIQ 136
SEL I RA G+S +W ++ P +V IL+G + IA SG +
Sbjct: 81 SNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVGEYVAPWTENIAQSGRALA----- 135
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
+ GD Q S W + Q +I + P N + T D++ + A
Sbjct: 136 --QGGGDSQSSKRGLWHR----QGREYIHINAVQP-NGVLYGVTRYRFDEQRGLESASFA 188
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEII--- 253
A D +L++V P +K S + +P +++ Q + + ++
Sbjct: 189 KRARFETDHWQLEEVTTTLLH--PREKRSEVVKLPT-----ERWDAQLSPQLLNTVVMEP 241
Query: 254 KKMSFSNKSNIFH--------NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ +S S H N R F+ ++ PL+ A+ L+A S RS
Sbjct: 242 EALSISGLWQYIHYLADQGLNNNRYWLAFWTKVLQPLVTAALVLMAISFIFGPLRS---- 297
Query: 306 IIVAYGIFSGFMLYTIITIMKS-FGKSGILL---PVAAALIPVILTISLSILILLQK 358
+ + IF+G ++ + I + G S ++ P+ A +IP + +L+ + LL++
Sbjct: 298 VTLGQRIFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVVIPASIC-ALAGVWLLRR 353
>gi|218438808|ref|YP_002377137.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
gi|218171536|gb|ACK70269.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
Length = 434
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 140/333 (42%), Gaps = 46/333 (13%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG---- 113
RVP +P L+ ++ + L+ SEL+ R+ GIS+W+ P V+ S+++
Sbjct: 118 RVPEFFAYALPISVLLTTLMTYGRLSSESELIALRSCGISLWRATVPAVILSVIVSGITF 177
Query: 114 IFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIP-WMQISNPQQDIFIGAKKIL-P 171
+F+ V+ +I + ++ + + N + K P + ++ F K +
Sbjct: 178 VFSEGVVPETNYRATEILVKVLHE-ERNFWQNKDIFYPNYEEVKLANGQTFRQLKTLFYA 236
Query: 172 ENHIWEDFTSITI-----DKKNKIIHRKDA------DLAIIYNDKVKL-------KKVVE 213
E + S+TI D N+I+ A ++ +N V L K+ V
Sbjct: 237 EKFDGQKMRSLTIINWLGDHLNEIVVSDSAQWNANQNIWDFFNGTVYLIDTDKSYKEAVP 296
Query: 214 YQYGRIPIDKN----STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR 269
+++ + P+ K +T P +M+ FQ Y+ + + S NK+ F + R
Sbjct: 297 FKHQQFPLPKEAFEFATQGRNPYEMNLFQALQ--------YKRLLEASGDNKNVRFFDVR 348
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG--FMLYTIITIMKS 327
+ I P + + ++ A++ ++ Q + G+ G F Y + S
Sbjct: 349 IHQK----IAFPFVCLVFGIMGAAIG---AKPQQMSRGTSLGLTVGIVFSYYMLNFFTGS 401
Query: 328 FGKSGILLPVAAALIPVILTISLSILILLQKED 360
FG G+L P+ AA +P + + + IL + E+
Sbjct: 402 FGMIGLLSPMMAAWLPNLFGVGIGGWILKKLEN 434
>gi|317494175|ref|ZP_07952591.1| inner membrane protein yjgQ [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316917948|gb|EFV39291.1| inner membrane protein yjgQ [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 356
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 81/366 (22%), Positives = 146/366 (39%), Gaps = 17/366 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + T + L + L +I + ++G+ +YS + + VP
Sbjct: 1 MLGVLDRYIGRTIFSTIMATLFMLVSLSGIIKFVDQLRKVGQ-GDYSAAGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + + +I L I T+ +
Sbjct: 60 KDIEVFFPMAALLGALLGLGMLAQRSELVVMQAAGYTRMQIASSVMKTAIPLVILTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE+ + Q G + W + FI +++ E I + +
Sbjct: 120 EWVAPQGEQAARNYRAQQMYGGSLLSTQTGLWAKDGTD----FIFIQRVTGEKSI-QGVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIK 233
+ D + + + A+ A + KL +V E S TLN P K
Sbjct: 175 IYSFDNERHLQKLRYANSATFEGHQWKLSQVEESNLTDSKRITGSQTLNGVWKTNLTPDK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + Y +K + S + + R + + I PL + M L+A S
Sbjct: 235 LGVVAMSPDSLSISGLYHYVKYLKQSGQ----ESSRYQLNMWSKIFAPLSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + V GI GF Y + I + PV A++P +L + +S+
Sbjct: 291 FIFGPLRSVPMGVRVLTGISFGFFFYVLDEIFGPLSLVYSVPPVLGAILPSLLFLLISVY 350
Query: 354 ILLQKE 359
+LL+K
Sbjct: 351 MLLRKS 356
>gi|260655096|ref|ZP_05860584.1| putative membrane protein [Jonquetella anthropi E3_33 E1]
gi|260630207|gb|EEX48401.1| putative membrane protein [Jonquetella anthropi E3_33 E1]
Length = 339
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 70/352 (19%), Positives = 147/352 (41%), Gaps = 61/352 (17%)
Query: 42 ELPNYSISRGAVLAAT------RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIG 95
+L + I RG LA +P ++ +P L+ ++ F ++ SE+V +A G
Sbjct: 15 KLADLIIERGVSLAVAGRLFVYELPGVVVLTLPMSCLLGALLGFGAMSTNSEVVALKASG 74
Query: 96 ISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI 155
IS W++ P + ++++ I ++++ + G++ +++ KQK +I
Sbjct: 75 ISFWRMNWPVIFWAVIISILSLILNETLVPLGQRAAENVM---TFEVAKQKPVLI----- 126
Query: 156 SNPQQDIFIGA--------KKILPENHIWED----------FTSITIDKKNK----IIHR 193
+Q++F+ A K+ P + + T IT+ + I +
Sbjct: 127 ---KQEVFLQAPGGRVVYVGKLDPSSGSMSNVIVQELASGKLTRITVAPNGQWVSGIWYL 183
Query: 194 KDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKFSEQFASRSFY 250
D D +Y K + + + +PI + N +K D ++ Y
Sbjct: 184 TDGD---VYEMKEPDGVAHLFHFAKQELPISLTPRQIANTSVKPD-------DLSASDLY 233
Query: 251 EIIKKMSFSNK--SNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
I M K S ++ +F+F + +P V ++LI S+ + R +
Sbjct: 234 RYIAAMKMQGKDISALW------VKFHFKLAVPWACVILSLIGTSLGVSHQRHGNRSVGF 287
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
I F+ Y ++++ KS G++ L PV A +P I+ + ++ + L+++ D
Sbjct: 288 GQSILIVFLYYVLMSVGKSLGQTNALPPVVAGWLPNIIFL-VAAVFLIRRAD 338
>gi|302188385|ref|ZP_07265058.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae 642]
Length = 353
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 99/229 (43%), Gaps = 19/229 (8%)
Query: 11 KYYLKTTLYFLLGAM-ILVFVIDLNEIQNQMGELPN-YSISRGAVLAATRVPLIIQQIIP 68
+Y K+ L +L + I++ ++ L ++MG++ + Y+++ P + +P
Sbjct: 6 RYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISDTYTLADALSYVMLTAPRRVYDTLP 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISI----WQLLNPFVVGSILLGIFTVLVINPIA 124
L+ ++ L +SEL I RA G+SI W ++ P +V ++ G+ + P A
Sbjct: 66 MAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLV-LMIAGVLVGEYVAPYA 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + L Q +GD Q + W + Q D FI + P N + T
Sbjct: 125 ENQAQAARSLAQ---GSGDAQSARHGLWHR----QGDEFIHINTVQP-NGLMLGVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
D++ ++ A A D +LK V + D ++ +N P++
Sbjct: 177 DEQRHMLTSSFAKEANFKTDYWELKDVATTHFN----DGSTEVVNTPVE 221
>gi|22124661|ref|NP_668084.1| hypothetical protein y0748 [Yersinia pestis KIM 10]
gi|45440497|ref|NP_992036.1| hypothetical protein YP_0645 [Yersinia pestis biovar Microtus str.
91001]
gi|51594885|ref|YP_069076.1| membrane protein, permease [Yersinia pseudotuberculosis IP 32953]
gi|108808931|ref|YP_652847.1| hypothetical protein YPA_2940 [Yersinia pestis Antiqua]
gi|108810814|ref|YP_646581.1| hypothetical protein YPN_0649 [Yersinia pestis Nepal516]
gi|145600503|ref|YP_001164579.1| hypothetical protein YPDSF_3249 [Yersinia pestis Pestoides F]
gi|153949000|ref|YP_001402495.1| permease [Yersinia pseudotuberculosis IP 31758]
gi|153997519|ref|ZP_02022619.1| putative membrane protein [Yersinia pestis CA88-4125]
gi|162420587|ref|YP_001608340.1| hypothetical protein YpAngola_A4049 [Yersinia pestis Angola]
gi|165925751|ref|ZP_02221583.1| putative permease [Yersinia pestis biovar Orientalis str. F1991016]
gi|166010149|ref|ZP_02231047.1| putative permease [Yersinia pestis biovar Antiqua str. E1979001]
gi|166214265|ref|ZP_02240300.1| putative permease [Yersinia pestis biovar Antiqua str. B42003004]
gi|167399516|ref|ZP_02305040.1| putative permease [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167423672|ref|ZP_02315425.1| putative permease [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|170025892|ref|YP_001722397.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
YPIII]
gi|186893895|ref|YP_001871007.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
PB1/+]
gi|218930455|ref|YP_002348330.1| hypothetical protein YPO3439 [Yersinia pestis CO92]
gi|229839083|ref|ZP_04459242.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229896571|ref|ZP_04511738.1| conserved inner membrane protein [Yersinia pestis Pestoides A]
gi|229899646|ref|ZP_04514787.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229901017|ref|ZP_04516141.1| conserved inner membrane protein [Yersinia pestis Nepal516]
gi|270489197|ref|ZP_06206271.1| inner membrane family protein [Yersinia pestis KIM D27]
gi|294505143|ref|YP_003569205.1| hypothetical protein YPZ3_3034 [Yersinia pestis Z176003]
gi|21957470|gb|AAM84335.1|AE013676_8 hypothetical protein y0748 [Yersinia pestis KIM 10]
gi|45435354|gb|AAS60913.1| putative membrane protein [Yersinia pestis biovar Microtus str.
91001]
gi|51588167|emb|CAH19773.1| putative membrane protein, permease [Yersinia pseudotuberculosis IP
32953]
gi|108774462|gb|ABG16981.1| membrane protein [Yersinia pestis Nepal516]
gi|108780844|gb|ABG14902.1| putative membrane protein [Yersinia pestis Antiqua]
gi|115349066|emb|CAL22028.1| putative membrane protein [Yersinia pestis CO92]
gi|145212199|gb|ABP41606.1| membrane protein [Yersinia pestis Pestoides F]
gi|149289156|gb|EDM39236.1| putative membrane protein [Yersinia pestis CA88-4125]
gi|152960495|gb|ABS47956.1| putative permease [Yersinia pseudotuberculosis IP 31758]
gi|162353402|gb|ABX87350.1| putative permease [Yersinia pestis Angola]
gi|165922363|gb|EDR39540.1| putative permease [Yersinia pestis biovar Orientalis str. F1991016]
gi|165991056|gb|EDR43357.1| putative permease [Yersinia pestis biovar Antiqua str. E1979001]
gi|166204497|gb|EDR48977.1| putative permease [Yersinia pestis biovar Antiqua str. B42003004]
gi|167052020|gb|EDR63428.1| putative permease [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167057842|gb|EDR67588.1| putative permease [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169752426|gb|ACA69944.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
YPIII]
gi|186696921|gb|ACC87550.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
PB1/+]
gi|229682356|gb|EEO78448.1| conserved inner membrane protein [Yersinia pestis Nepal516]
gi|229687138|gb|EEO79213.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695449|gb|EEO85496.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229700349|gb|EEO88381.1| conserved inner membrane protein [Yersinia pestis Pestoides A]
gi|262363204|gb|ACY59925.1| hypothetical protein YPD4_3021 [Yersinia pestis D106004]
gi|270337701|gb|EFA48478.1| inner membrane family protein [Yersinia pestis KIM D27]
gi|294355602|gb|ADE65943.1| hypothetical protein YPZ3_3034 [Yersinia pestis Z176003]
Length = 358
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 84/382 (21%), Positives = 160/382 (41%), Gaps = 47/382 (12%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L T L LL + L +I + ++G+ +YS + + +P
Sbjct: 1 MFGVLDRYIGRTILNTILMTLLMLVSLSGIIKFVDQLRKVGQ-GDYSAASAGMYTILSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIAVFFPMAALLGALLGLGTLASRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE+ + Q G + W + + FI +++ E+ + T
Sbjct: 120 EWVAPQGEQTARNFRTQQMYGGSLLSTQSGLWAKDGSD----FIYIQRVSGESEL----T 171
Query: 181 SITI---DKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ I DK+++++ + A A D +L +V E + L+ P ++
Sbjct: 172 GVNIYHFDKEDRLLSVRYAATATYEKDNKTWRLSQVDE------------SDLSNPTQVT 219
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKS---NIFHNY------------RAETQFYFLIVI 280
G Q + ++ + E + ++ S + H+Y R E + +
Sbjct: 220 GSQTLTGEWKTNLTPEKLGVVAMDPDSLSISGLHDYSKYLQQSGQESNRYELSMWSKVFA 279
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL---PV 337
P + M L+A S RS + V GIF GF+ Y + + FG+ ++ P+
Sbjct: 280 PFSVAVMMLMALSFIFGPLRSVPMGVRVVTGIFFGFVFYVLDQV---FGRLSLVYGIPPM 336
Query: 338 AAALIPVILTISLSILILLQKE 359
AL+P +L + +SI +LL++
Sbjct: 337 LGALLPSMLFLLISICLLLKRR 358
>gi|160872818|ref|ZP_02062950.1| permease [Rickettsiella grylli]
gi|159121617|gb|EDP46955.1| permease [Rickettsiella grylli]
Length = 355
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 78/360 (21%), Positives = 146/360 (40%), Gaps = 25/360 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + + TTL L +IL +I L +G +Y+++ +P
Sbjct: 6 RYLGRTIIHTTLSVLGILLILFALIQLISETRDIGT-GHYTLTSAFSYVLLTLPSQFYNF 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P L+ +I+ L++ SEL+I A G+S++Q+ + ++ + TVL+ +A
Sbjct: 65 FPIAILLGSILGLNVLSKHSELMILHANGVSLYQMAWSLIKATLWMVFITVLIGEGLAPH 124
Query: 127 GEKI-----------GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
++ G L Q + + I I +P + + +N++
Sbjct: 125 AARLAESHKFFLTTKGQTLTTQQGSVWIRDGHNFIYIQSILDPTHLNHVNCYQFDDDNNL 184
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + ++ K K H D ++I +KVK KK + ++ T++I IK
Sbjct: 185 LKASFAKQVNYKAKAWHAYDIATSLITLNKVK-KKFIAHEIWPFSFSPKLLTISI-IK-- 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
E+ + R +E I K N + F+ IV P+ L M +A S
Sbjct: 241 -----PEEMSLRQLHEYIHY----RKKNHLNTSPYSFAFWKRIVEPISLWVMMCLAIPFS 291
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ R+ + GI GF Y + + F P AAL+P+ + + ++IL++
Sbjct: 292 FKHLRTLATSLKTLAGITIGFSFYLLNNFLGPFAIVYQWPPFLAALLPLFIFMLIAILLM 351
>gi|145219259|ref|YP_001129968.1| permease YjgP/YjgQ family protein [Prosthecochloris vibrioformis
DSM 265]
gi|145205423|gb|ABP36466.1| permease YjgP/YjgQ family protein [Chlorobium phaeovibrioides DSM
265]
Length = 360
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 79/368 (21%), Positives = 156/368 (42%), Gaps = 39/368 (10%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR-VPLI 62
IL RY F+ ++KT ++ + + +F++ +N ++N + + VL R +P
Sbjct: 3 ILDRYIFQQFVKTFVFTTI-TFVSLFIL-INMVENLGDFMDRKLLFTDIVLYYLRAIPDT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSIL---LGIFTVLV 119
I P +L+ +I+V L +SEL R+ G+S+ QLL PF++G I+ L I
Sbjct: 61 ILITSPVSSLLASILVAGRLAGSSELPAIRSAGVSMRQLLYPFLLGGIIISTLNIINSFW 120
Query: 120 INPIAT-SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI---------FIGAKKI 169
+ PIA D + + + NG + S+ + I P + F GAK++
Sbjct: 121 LAPIAAVHNHAFERDHLGKSRRNGAAEGSN----LHIIEPGSRVVTIGRLNTSFTGAKEV 176
Query: 170 LPENHIWE------DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
E D S+ D NK ++A + EYQ +
Sbjct: 177 SIEEFSGTGLRGRIDAESMRYDTGNKEWTLQNAA------QRRFTPGGEEYQ------AR 224
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ +L + + + + + + F + + ++ + R + + I +P
Sbjct: 225 PALSLPLSLTLKSLAELNLRPDEMQFIQHWQYLAEKKHAGFAGLERTMVKLHTKIAVPFA 284
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ + LI +S + R I +F+GF+ + + +FG +G++ P+ AA +P
Sbjct: 285 SLIIILIGVPLSAKKKRGGLATEI-GISLFAGFLFLGLQKTIATFGYNGVVNPMLAAWLP 343
Query: 344 VILTISLS 351
+L +++
Sbjct: 344 NLLFLAIG 351
>gi|330899516|gb|EGH30935.1| permease YjgP/YjgQ [Pseudomonas syringae pv. japonica str.
M301072PT]
gi|330975730|gb|EGH75796.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 353
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 19/229 (8%)
Query: 11 KYYLKTTLYFLLGAM-ILVFVIDLNEIQNQMGELPN-YSISRGAVLAATRVPLIIQQIIP 68
+Y K+ L +L + I++ ++ L ++MG++ + Y+++ P + +P
Sbjct: 6 RYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISDTYTLADALSYVMLTAPRRVYDTLP 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISI----WQLLNPFVVGSILLGIFTVLVINPIA 124
L+ ++ L +SEL I RA G+SI W ++ P +V ++ G+ + P A
Sbjct: 66 MAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLV-LMIAGVLVGEYVAPYA 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + L Q +GD Q + W + Q D FI + P N + T
Sbjct: 125 ENQAQAARSLAQ---GSGDAQSARHGLWHR----QGDEFIHINTVQP-NGLMLGVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
D + ++ A A D +LK V + D ++ +N P++
Sbjct: 177 DDQRHMLTSSFAKEAHFKTDYWELKDVATTHFN----DGSTEVVNTPVE 221
>gi|297620918|ref|YP_003709055.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
86-1044]
gi|297376219|gb|ADI38049.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
86-1044]
Length = 371
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSI-SRGAVLAAT----R 58
I+WRY Y K ++G + F+ L + +++ E+ ++++ S LAA +
Sbjct: 4 IIWRYLLSQYFK-----VMGLCVAAFIAVL--LTSRLDEIAHFAVLSPTPALAAQFILLQ 56
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P I+ +IP L+ +I++ L+++ EL R+ GIS+ L P + S+L+
Sbjct: 57 IPYILPIVIPVSCLISSILLVQRLSKSHELTAFRSCGISLKDFLTPILFSSVLVAFINFY 116
Query: 119 VINPIAT 125
+I+ ++T
Sbjct: 117 IISELST 123
>gi|284929475|ref|YP_003421997.1| putative permease [cyanobacterium UCYN-A]
gi|284809919|gb|ADB95616.1| predicted permease [cyanobacterium UCYN-A]
Length = 382
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 135/315 (42%), Gaps = 38/315 (12%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVV-GSILLGIFT 116
++P + P L+ ++ + L+ SE++ R++G+ I++L+ P V+ G I+ G
Sbjct: 64 KIPGFLSLAFPMAILLAALMAYSRLSSDSEIIALRSLGVGIYRLVIPVVIFGFIVTGCAF 123
Query: 117 VL--VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI---SNPQQDIFIGAKKILP 171
V+ I P AT I ++ K K+ + + P + N Q+ + +
Sbjct: 124 VVNDWIAPAATHKAAIILEEAVSQKRPDFKRHNIVYPEYKTVKGKNGQESTML-TRLFHA 182
Query: 172 ENHIWEDFTSITI-----DKKNKIIHRKDADLAI------IYNDKVKL-------KKVVE 213
E + E+ +TI + N+I+ + A I +N + L + +V
Sbjct: 183 EEYNGEEMKGLTILDRTQEGVNQIVTSESATWNISSNTWDFFNGTIYLIAPDGSYRNIVR 242
Query: 214 YQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ 273
+Q+ ++ + + L D Q F+E S + E +K + FS + Q
Sbjct: 243 FQHQQLALPRAPLDL-----ADRRQNFTEMTISET-REYLKAVQFSGNEKRIRKVKVRLQ 296
Query: 274 FYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFML-YTIITIMK-SFGKS 331
+ +P + + L+ AS+ ++ +N+ ++G+ G + Y I+ M S G
Sbjct: 297 EKY--AMPFVCLIFGLVGASIGVKPQNTNRA---TSFGVCVGLIFGYYILAFMSTSLGIW 351
Query: 332 GILLPVAAALIPVIL 346
GIL P A +P I+
Sbjct: 352 GILTPFLGAWLPNIV 366
>gi|238927586|ref|ZP_04659346.1| permease YjgP/YjgQ family protein [Selenomonas flueggei ATCC 43531]
gi|238884511|gb|EEQ48149.1| permease YjgP/YjgQ family protein [Selenomonas flueggei ATCC 43531]
Length = 379
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/304 (18%), Positives = 126/304 (41%), Gaps = 25/304 (8%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P ++ P L+ +++ F L+ +SE+ ++ GI ++ P ++ ++ + VL
Sbjct: 75 LPGVVMWTFPMSMLLASLLTFGRLSSSSEITAMKSCGIGFGRIAAPAILLGFVVSVGAVL 134
Query: 119 VINPIATSGEKIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ ++I + + N + + + +I Q + A+ E
Sbjct: 135 FNEHVVPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEIEGGQIKRLVYARSYDAEQQHLT 194
Query: 178 DFTSITIDKKNKIIHRKDADLA-------IIYNDKV------KLKKVVEYQYGRIPIDKN 224
+ K+ H ++A+ A I++ V L++ + ++ +P++KN
Sbjct: 195 GVSLQIFGADGKVSHVENAEYAEWTGSEWIMHQGDVYDIADEHLERRMHFETQVLPVEKN 254
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
P ++ QK E+ R I M ++ + + E + Y + +P+
Sbjct: 255 ------PRQIIREQKAPEEMTMRELRHQITLM----QTQYVNTNKLEAELYQRVSVPMAS 304
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ TLI + L+ +R N A + F+ Y ++T+ + + G+L P+ A IP
Sbjct: 305 LIFTLIGVPLGLQPTR-NSSSAGFAMSVIIIFIYYALMTMGNALARGGVLPPMFAVWIPN 363
Query: 345 ILTI 348
I+ I
Sbjct: 364 IVGI 367
>gi|94495767|ref|ZP_01302347.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
gi|94425155|gb|EAT10176.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
Length = 366
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/382 (20%), Positives = 144/382 (37%), Gaps = 58/382 (15%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL---AATRVPLIIQ 64
Y + +L T L AM++V + L+ + N G++ Y + A L R P II
Sbjct: 14 YMARLFLTRTFAVL--AMLVVVLQTLDLLGNS-GDILAYPGNSDAQLWHYVGLRAPQIIA 70
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV-----LV 119
+PF L+ +V+ LN+ SE++ +A G+S Q+L P V+ ++ + I + +V
Sbjct: 71 TFLPFSVLLGTLVMLATLNQNSEIISMKAAGLSAHQILAPLVLAALGVSIISFVFNERIV 130
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ A +D D+G K PW++ N + I A +
Sbjct: 131 VRSTAALSAWEAVDYGPVPPDSGVKSN----PWVRDGNNLVNAAIVAGR----------G 176
Query: 180 TSITIDKKNKIIHRKDADLAIIYND-KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T++ + + IYN +L +V+ G + S L + D +
Sbjct: 177 TAVQLRQVE------------IYNRINNRLTTIVQAPKGHYDVASKSWVLEGARQFDVAR 224
Query: 239 KFSEQFASRSFYEIIKKMSFS-----NKSNIFHNYRA---------------ETQFYFLI 278
+ F I+ F+ + FH A E + +
Sbjct: 225 GTVSNIGTVRFGRDIRPDQFTLARVDPDALTFHELEAAIGDLRDAGRPTKELEGSLWHKL 284
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
PL + M ++ + + +RS Q + G+ GF + + G G PV
Sbjct: 285 SGPLSALLMPILGSVAAFGLARSGQLFMRAVLGMALGFAYFVADNFSLAMGNLGAYPPVL 344
Query: 339 AALIPVILTISLSILILLQKED 360
AA P L + + +L + E+
Sbjct: 345 AAWAPFFLFLLVGETVLFRTEE 366
>gi|262367136|gb|ACY63693.1| membrane protein [Yersinia pestis D182038]
Length = 358
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/382 (21%), Positives = 160/382 (41%), Gaps = 47/382 (12%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L T L LL + L +I + ++G+ +YS + + +P
Sbjct: 1 MFGVLDRYIGRTILNTILMTLLMLVSLSGIIKFVDQLRKVGQ-GDYSAASAGMYTILSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIAVFFPMAALLGALLGLGTLASRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE+ + Q G + W + + FI +++ E+ + T
Sbjct: 120 EWVAPQGEQTARNFRTQQMYGGSLLSTQSGLWAKDGSD----FIYIQRVSGESEL----T 171
Query: 181 SITI---DKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ I DK+++++ + A A D +L +V E + L+ P ++
Sbjct: 172 GVNIYHFDKEDRLLSVRYAATATYEKDNKTWRLSQVDE------------SDLSNPTQVT 219
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKS---NIFHNY------------RAETQFYFLIVI 280
G Q + ++ + E + ++ S + H+Y R E + +
Sbjct: 220 GSQTLTGEWKTNLTPEKLGVVAMDPDSLSISGLHDYSKYLQQSGQESNRYELSMWSKVFA 279
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL---PV 337
P + M L+A S RS + V GIF GF+ Y + + FG+ ++ P+
Sbjct: 280 PFSVAVMMLMALSFIFGPLRSVPMGVRVVTGIFFGFVFYVLDHV---FGRLSLVYGIPPM 336
Query: 338 AAALIPVILTISLSILILLQKE 359
AL+P +L + +SI +LL++
Sbjct: 337 LGALLPSMLFLLISICLLLKRR 358
>gi|296114025|ref|YP_003627963.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis RH4]
gi|295921719|gb|ADG62070.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis RH4]
gi|326566094|gb|EGE16251.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis BC1]
gi|326572162|gb|EGE22158.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis BC7]
gi|326573712|gb|EGE23670.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis O35E]
Length = 369
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/377 (22%), Positives = 162/377 (42%), Gaps = 42/377 (11%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN----YSISRGAVLAATRVPLIIQQI 66
KY +++ L + GA++ ++++ + + + EL N Y+++ + R P + Q
Sbjct: 8 KYVIRSALLAMAGAVVGLWLVQM--VFAYLAELDNISETYTLTDALLFILYRSPYFLVQF 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISI-----WQLLNP--FVVGSILLGIFTVLV 119
IP TL+ ++ L SEL++ RA G+SI W +L FVV S+ + F +
Sbjct: 66 IPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVVISLGVNQFVLPT 125
Query: 120 INPIATS--GEKIGIDLIQ---QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
N A + + I LI W N D D++ IS + +G K +
Sbjct: 126 ANQHAAAIRADTIYDKLITIDGYWSVNHDGDNQDVV---YISYADNEGGLGEVK----RY 178
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK----LKKVVEYQYGRIPIDKNSTT--- 227
+D IT K ++ +D ++ K + L + E G + + +
Sbjct: 179 QLKDGQLITALKAKSGVYLPQSD-DVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKI 237
Query: 228 LNIPIKMDG---FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
L +PI K E + S Y + M+ ++ H E F+ ++ P +
Sbjct: 238 LTLPIAPTDVYLLTKEPEDLSLSSLYAHRQLMAHQGTRSLRH----ELAFWQKLLSPFAV 293
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF-GKSGILLPVAAALIP 343
+++ L+A+S RS + V + +G +L++ +T + F + L P+ AL+P
Sbjct: 294 LSLVLVASSFVFGSLRSQGLGLRVVLALLTG-LLFSYLTDLTGFVALATGLSPLLMALVP 352
Query: 344 VILTISLSILILLQKED 360
++L+ + +L +K
Sbjct: 353 IVLSAMAGMYLLNRKSS 369
>gi|304437499|ref|ZP_07397457.1| permease YjgP/YjgQ family protein [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304369549|gb|EFM23216.1| permease YjgP/YjgQ family protein [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 376
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/311 (18%), Positives = 130/311 (41%), Gaps = 25/311 (8%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P ++ P L+ +++ F L+ +SE+ ++ GI ++ P ++ L+ + +L
Sbjct: 72 LPGVVMWTFPMSMLLASLLTFGRLSSSSEITAMKSCGIGFGRIAAPAILLGFLVSVGAIL 131
Query: 119 VINPIATSGEKIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ ++I + + N + + + +I Q + A+ E
Sbjct: 132 FNEHVVPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEIEGGQIKRLVYARSYNAEQQQLT 191
Query: 178 DFTSITIDKKNKIIHRKDADLA-------IIYNDKV------KLKKVVEYQYGRIPIDKN 224
+ K+ H ++A+ A I++ V L++ + ++ +P++K+
Sbjct: 192 GVSLQIFGADGKVSHVENAEYAEWTGSEWIMHKGDVYDIADEHLERRMRFETQVLPVEKD 251
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
P ++ QK E+ R I M ++ + + E + Y + +P+
Sbjct: 252 ------PRQIIREQKSPEEMTMRELRHQIALM----QTQYVNTSKLEAELYQRVSVPMAS 301
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ TLI + L+ +R N A + F+ Y ++T+ +F + +L P+ A IP
Sbjct: 302 LIFTLIGVPLGLQPTR-NSSSAGFAMSVIIIFIYYALMTMGNAFARGEVLPPMLAVWIPN 360
Query: 345 ILTISLSILIL 355
I+ I I++L
Sbjct: 361 IVGIIAGIILL 371
>gi|294793349|ref|ZP_06758494.1| membrane protein, YjgP/YjgQ family [Veillonella sp. 6_1_27]
gi|294455780|gb|EFG24145.1| membrane protein, YjgP/YjgQ family [Veillonella sp. 6_1_27]
Length = 363
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 126/307 (41%), Gaps = 30/307 (9%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P I+ P L+ +++ F L+ TSE+V+ RA G+S +L P + ++++ I V
Sbjct: 58 LPSIVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVA 117
Query: 119 VINPIATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ + ++ +Q N Q + I ++ + + AK E
Sbjct: 118 FNEFVVPRTNHMYQTIVREQIMKNASPQTQNHIVLKTMNGDELGTLLYAKSYDAETKQLS 177
Query: 178 DFTSITIDKKNKIIHRKDADLA------------IIYNDKV--KLKKVVEYQYGRIPIDK 223
T + K+ ++AD A IIY+ +++ ++++ +PI
Sbjct: 178 MITVQQFGEGGKLQQVENADTAIWNGQYWVMQNGIIYDLSAGNGVERTMKFKEQSLPIK- 236
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIK--KMSFSNKSNIFHNYRAETQFYFLIVIP 281
+ P + Q+ E+ + I+ K +++N + + E + Y IP
Sbjct: 237 -----SAPKDIQQDQRKPEELTIKELRHQIRAYKAAYTNANKL------EMEMYQRFTIP 285
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
L L+ A + L+ RS+ + F+ Y ++T + GK G L V AAL
Sbjct: 286 LASFVFALVGAPLGLQKQRSSSSIGFGISILII-FIYYGVMTFAGALGKGGALPTVLAAL 344
Query: 342 IPVILTI 348
IP L I
Sbjct: 345 IPDTLGI 351
>gi|289678193|ref|ZP_06499083.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae FF5]
Length = 321
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 125/300 (41%), Gaps = 35/300 (11%)
Query: 11 KYYLKTTLYFLLGAM-ILVFVIDLNEIQNQMGELPN-YSISRGAVLAATRVPLIIQQIIP 68
+Y K+ L +L + I++ ++ L ++MG++ + Y+++ P + +P
Sbjct: 6 RYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISDTYTLADALSYVMLTAPRRVYDTLP 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISI----WQLLNPFVVGSILLGIFTVLVINPIA 124
L+ ++ L +SEL I RA G+SI W ++ P +V ++ G+ + P A
Sbjct: 66 MAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLV-LMIAGVLVGEYVAPYA 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + L Q +GD Q + W + Q D FI + P N + T
Sbjct: 125 ENQAQAARSLAQ---GSGDAQSARHGLWHR----QGDEFIHINTVQP-NGLMLGVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D + ++ A A D +LK V + D ++ +N P+ +++
Sbjct: 177 DDQRHMLTSSFAKEAHFKTDYWELKDVATTHFN----DGSTEVVNTPV-----ERWDVAL 227
Query: 245 ASRSFYEII---KKMSFSNKSNIFH--------NYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + +I + +S S + H N R F+ ++ P + VA+ L+A S
Sbjct: 228 SPQLLSTVIMPPESLSISGLWSYAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAIS 287
>gi|292669943|ref|ZP_06603369.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292648414|gb|EFF66386.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 366
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/323 (21%), Positives = 139/323 (43%), Gaps = 44/323 (13%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG----- 113
+P ++ P L+ +++ F L+ SE+ ++ GI ++ P +ILLG
Sbjct: 62 LPGVVMWTFPMAMLLASLLTFGRLSSASEITAMKSCGIGFGRIAAP----AILLGFIVSV 117
Query: 114 --IFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP 171
IF + P A + + + + ++G K + +I +I Q + A+
Sbjct: 118 GAIFFNEHVVPRANTAYR-NVIYYEIEGNSGMKSQEHVI-IKEIEEGQIRRLVYARSYDA 175
Query: 172 ENHIWEDFTSITID---KKNKIIHRKDADLA-------IIYNDKV------KLKKVVEYQ 215
E E T I++ K+ H ++A+ A I++N V L++ + ++
Sbjct: 176 EQ---ERLTGISLQVFGDDGKVTHVENAEYAEWTGTEWIMHNGDVYDIADEHLERRMRFE 232
Query: 216 YGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY 275
+P+ K+ P ++ QK E+ R I M ++ + + E + Y
Sbjct: 233 TQVLPVQKD------PRQIIREQKVPEEMTMRELRHQIALM----QTQYVNTSKLEAELY 282
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ +P+ + TLI + L+ +R N A + F Y ++T+ +F + +L
Sbjct: 283 QRVSVPMASLIFTLIGVPLGLQPTR-NSSSAGFAMSVIIIFFYYALMTMGNAFARGEVLP 341
Query: 336 PVAAALIPVILTISLSILILLQK 358
P+ A IP I+ I ++ ILL++
Sbjct: 342 PMLAVWIPNIVGI-IAGTILLRR 363
>gi|282850060|ref|ZP_06259442.1| YjgP/YjgQ family [Veillonella parvula ATCC 17745]
gi|282580249|gb|EFB85650.1| YjgP/YjgQ family [Veillonella parvula ATCC 17745]
Length = 363
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 126/307 (41%), Gaps = 30/307 (9%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P I+ P L+ +++ F L+ TSE+V+ RA G+S +L P + ++++ I V
Sbjct: 58 LPSIVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVA 117
Query: 119 VINPIATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ + ++ +Q N Q + I ++ + + AK E
Sbjct: 118 FNEFVVPRTNHMYQTIVREQIMKNASPQTQNHIVLKTMNGDELGTLMYAKSYNAETKQLS 177
Query: 178 DFTSITIDKKNKIIHRKDADLA------------IIYNDKV--KLKKVVEYQYGRIPIDK 223
T + K+ ++AD A IIY+ +++ ++++ +PI
Sbjct: 178 MITVQQFGEGGKLQQVENADTAIWNGQYWVMQNGIIYDLSAGNGVERTMKFKEQSLPIK- 236
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIK--KMSFSNKSNIFHNYRAETQFYFLIVIP 281
+ P + Q+ E+ + I+ K +++N + + E + Y IP
Sbjct: 237 -----SAPKDIQQDQRKPEELTIKELRHQIRAYKAAYTNANKL------EMEMYQRFTIP 285
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
L L+ A + L+ RS+ + F+ Y ++T + GK G L V AAL
Sbjct: 286 LASFVFALVGAPLGLQKQRSSSSIGFGISILII-FIYYGVMTFAGALGKGGALPTVLAAL 344
Query: 342 IPVILTI 348
IP L I
Sbjct: 345 IPDTLGI 351
>gi|313895766|ref|ZP_07829321.1| permease, YjgP/YjgQ family [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312975595|gb|EFR41055.1| permease, YjgP/YjgQ family [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 366
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/310 (19%), Positives = 133/310 (42%), Gaps = 37/310 (11%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFV-------VGSIL 111
+P ++ P L+ +++ F L+ SE+ ++ GI+ ++ P V VG+IL
Sbjct: 62 LPGVVMWTFPMSMLLASLLTFGKLSSASEITAMKSCGINFTRIAAPAVLLGFVVSVGAIL 121
Query: 112 LGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP 171
+ V P A + + + + ++G K + +I +I++ Q + A+
Sbjct: 122 FNEYVV----PRANTAYR-NVIYYEIEGNSGMKSQEHVI-IKEITDGQIRRLVYARAYDA 175
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLA-------IIYNDKV------KLKKVVEYQYGR 218
E + + K+ H ++A+ A I+++ V +++ + ++
Sbjct: 176 EQQRLTNVSLQVFGDDGKVSHVENAEYAEWTGKEWIMHSGDVYDIADEHMERHMRFETQV 235
Query: 219 IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+P+ K+ P ++ QK E+ R I M ++ + + E + Y +
Sbjct: 236 LPVQKD------PRQIIREQKSPEEMTMRELRRQIALM----QTQYVNTNKLEAELYQRV 285
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+P+ + TLI + ++ +R N A + F Y ++T+ +F + G+L P+
Sbjct: 286 SVPMASLIFTLIGVPLGIQPTR-NSSSAGFAMSVIIIFFYYALMTMGNAFARGGVLPPML 344
Query: 339 AALIPVILTI 348
A IP I+ I
Sbjct: 345 AVWIPNIVGI 354
>gi|313894646|ref|ZP_07828209.1| permease, YjgP/YjgQ family [Veillonella sp. oral taxon 158 str.
F0412]
gi|313440836|gb|EFR59265.1| permease, YjgP/YjgQ family [Veillonella sp. oral taxon 158 str.
F0412]
Length = 363
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 126/307 (41%), Gaps = 30/307 (9%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P I+ P L+ +++ F L+ TSE+V+ RA G+S +L P + ++++ I V
Sbjct: 58 LPSIVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALMISIGAVA 117
Query: 119 VINPIATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ + ++ ++ N Q + I ++ + + AK E
Sbjct: 118 FNEFVVPRTNHMYQTIVREEIMKNATPQTQNHIVLKAMNGDELGTLMYAKSYNAETKQLS 177
Query: 178 DFTSITIDKKNKIIHRKDADLA------------IIYNDKV--KLKKVVEYQYGRIPIDK 223
T + K+ ++AD A IIY+ +++ ++++ +PI
Sbjct: 178 MITVQQFGEGGKLQQVENADTAIWNGQYWVMQNGIIYDVSAGDGVERTMKFKEQSLPIK- 236
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIK--KMSFSNKSNIFHNYRAETQFYFLIVIP 281
+ P + Q+ E+ + IK K +++N + + E + Y IP
Sbjct: 237 -----SAPKDIQQDQRKPEELTIKELRHQIKAYKAAYTNANKL------EMEMYQRFTIP 285
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
L L+ A + L+ RS+ + F+ Y ++T + GK G L V AAL
Sbjct: 286 LASFVFALVGAPLGLQKQRSSSSIGFGISILII-FIYYGVMTFAGALGKGGALPTVLAAL 344
Query: 342 IPVILTI 348
IP L I
Sbjct: 345 IPDTLGI 351
>gi|320530395|ref|ZP_08031454.1| hypothetical protein HMPREF9555_01558 [Selenomonas artemidis F0399]
gi|320137359|gb|EFW29282.1| hypothetical protein HMPREF9555_01558 [Selenomonas artemidis F0399]
Length = 369
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/310 (19%), Positives = 133/310 (42%), Gaps = 37/310 (11%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFV-------VGSIL 111
+P ++ P L+ +++ F L+ SE+ ++ GI+ ++ P V VG+IL
Sbjct: 65 LPGVVMWTFPMSMLLASLLTFGKLSSASEITAMKSCGINFTRIAAPAVLLGFVVSVGAIL 124
Query: 112 LGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP 171
+ V P A + + + + ++G K + +I +I++ Q + A+
Sbjct: 125 FNEYVV----PRANTAYR-NVIYYEIEGNSGMKSQEHVI-IKEITDGQIRRLVYARAYDA 178
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLA-------IIYNDKV------KLKKVVEYQYGR 218
E + + K+ H ++A+ A I+++ V +++ + ++
Sbjct: 179 EQQRLTNVSLQVFGDDGKVSHVENAEYAEWTGKEWIMHSGDVYDIADEHMERHMRFETQV 238
Query: 219 IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+P+ K+ P ++ QK E+ R I M ++ + + E + Y +
Sbjct: 239 LPVQKD------PRQIIREQKSPEEMTMRELRRQIALM----QTQYVNTNKLEAELYQRV 288
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+P+ + TLI + ++ +R N A + F Y ++T+ +F + G+L P+
Sbjct: 289 SVPMASLIFTLIGVPLGIQPTR-NSSSAGFAMSVIIIFFYYALMTMGNAFARGGVLPPML 347
Query: 339 AALIPVILTI 348
A IP I+ I
Sbjct: 348 AVWIPNIVGI 357
>gi|85374866|ref|YP_458928.1| permease [Erythrobacter litoralis HTCC2594]
gi|84787949|gb|ABC64131.1| predicted permease [Erythrobacter litoralis HTCC2594]
Length = 365
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/351 (20%), Positives = 135/351 (38%), Gaps = 65/351 (18%)
Query: 38 NQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS 97
N GEL Y A RVP ++Q+ +P+ L+ I+ LN+ SE++ +A G+S
Sbjct: 52 NGQGELLTY--------AGLRVPQLVQRFLPYSVLLATIITLIALNQNSEVIAMKAAGLS 103
Query: 98 IWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWK---------DNGDK---- 144
Q+L P ++ + L+ + + + T ++ W+ D+ K
Sbjct: 104 AHQVLAPLLLTAGLVALVSFGFNERVVTRATAT----LKAWEATEFGAVPPDSDVKANVY 159
Query: 145 --QKSDIIPWMQISNPQQDIFIGA---KKILPENHIWEDFTSIT---IDKKNKIIHRKDA 196
++I+ ++ DI +G + P I E +++ +D ++ + +
Sbjct: 160 ITDGTNILTARTVAGTGADIRLGDVTWYRRAPTGQIAEQVRAVSASFVDPGWQLENPQSF 219
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIP-------IDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
D+ + V E G P ID ++ +P F + S
Sbjct: 220 DITTANTTTSEAMVVGE---GLTPAQIELEAIDPDA----VP-----FWRLGSAIDS--- 264
Query: 250 YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVA 309
YE I + + ++ +H PL M L+ A + +RS Q I
Sbjct: 265 YEAIGRRTAELRAKWWHKLSG----------PLSAFLMPLLGAVAAFGLARSGQLFIRAV 314
Query: 310 YGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
G+ GF + + + G G P AA P +L + + +L++ E+
Sbjct: 315 IGMGLGFAYFVVDNAALAMGSFGGYPPFLAAWAPFLLFLLVGETVLIRTEE 365
>gi|193215417|ref|YP_001996616.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
35110]
gi|193088894|gb|ACF14169.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
35110]
Length = 360
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 87/381 (22%), Positives = 155/381 (40%), Gaps = 49/381 (12%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY F+ Y T + +L + L ++DL E + + N + A P II
Sbjct: 3 ILDRYIFREYFSTLGFAILAFVSLFILVDLIEKVDDFLD-KNVELKLIAQYYLYFTPEII 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP-FVVGSILLGIFTVLV--I 120
+ I+P TL+ ++ V L + +EL +A GIS+++LL P F+VG+I+ GI L +
Sbjct: 62 KLIVPISTLLASLFVTGKLAKQTELTAMKAGGISLYRLLLPFFLVGAIIGGIDFYLSGWV 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF- 179
P T ++K+ D W S ++ +I+ + +D
Sbjct: 122 VPETT-----------KFKEQFDATYLGKTKWKSSSFSNIELLENPNRIVRIGYFNKDTR 170
Query: 180 ----TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
S+ +K+ ++ R DA + Y+ L + + YQ + K+D
Sbjct: 171 TCQNVSLQNYQKSHMLWRIDA-AKMTYD--TSLSRWIFYQAYYRDFQSGKEQFSYAAKID 227
Query: 236 GFQ------KFSEQFASRS---------FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
Q + E A+ + E ++ FSN Y + F
Sbjct: 228 TVQLVFSAKELEENNAALDQMSLDEHWKYIEARRRAGFSNVDEALVKYHIKISF------ 281
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI--FSGFMLYTIITIMKSFGKSGILLPVA 338
P+ + + LI +S E RS I + GI GF+ + + G G + P+
Sbjct: 282 PIACLIVILIGVPLSAEKKRSG---IALEAGISLLIGFLYIILQKTFSTLGYKGAVDPIL 338
Query: 339 AALIPVILTISLSILILLQKE 359
+A IP L +++ ++ L + +
Sbjct: 339 SAWIPNFLFLTVGLVFLFKAK 359
>gi|118602882|ref|YP_904097.1| permease YjgP/YjgQ family protein [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
gi|118567821|gb|ABL02626.1| permease YjgP/YjgQ family protein [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
Length = 360
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 124/256 (48%), Gaps = 33/256 (12%)
Query: 13 YLKTTLYFLLGAMILVFV-----IDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y+ T+ F A++LV++ + E +G+ NY++ + +P ++
Sbjct: 7 YIVKTMAFYTSAVMLVWLGIYAFFNFLEEVTFIGQ-ANYTVFEVTKYVISDIPAVVYSYS 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
I L+ +++ +L TS+LV+ R+ G+SI Q+ N VV + L+ I V+ I + T
Sbjct: 66 SVIILLGSLLALGHLASTSQLVVIRSAGVSIMQISN-IVVRAALMFIAIVIFIGELVT-- 122
Query: 128 EKIGIDLIQQWKDNGDKQ----KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
I I+ + + + K+ W++ S ++FI KK + ++D T I
Sbjct: 123 -PITIEYAESLRAKALGENITFKNQQGFWLKDS----ELFIHVKKNF-DGKSFQDVTLIK 176
Query: 184 I---DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ D + I+H +D AI D ++L + + YQ+G+ D N TT + + F+K+
Sbjct: 177 LRAPDTLDSIVH---SDSAISNGDNLELSQSIHYQFGK---DGNLTTFS----ENNFEKY 226
Query: 241 SEQFA-SRSFYEIIKK 255
S Q + ++ E +KK
Sbjct: 227 SVQVSFNKKLIENLKK 242
>gi|242240954|ref|YP_002989135.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech703]
gi|242133011|gb|ACS87313.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech703]
Length = 356
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/366 (22%), Positives = 149/366 (40%), Gaps = 23/366 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY K T + L + L +I + ++G+ +YS+ + VP I
Sbjct: 4 VLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GSYSVLGAGLYTLLSVPKDI 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ ++ NL SELV+ +A G + Q+ + +I L + T+ + +
Sbjct: 63 EIFFPMAALLGALLGLGNLATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIGEWL 122
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A GE++ + Q G + W + N F+ +++ EN + +
Sbjct: 123 APPGEQMARNYRSQMMYGGSMLSTQSGLWAKDGND----FVYIQRVQGENEL----VGVN 174
Query: 184 I---DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-------GRIPIDKNSTTLNIPIK 233
I D ++K++ + A A+ N +L +V E G I T P K
Sbjct: 175 IYHFDNQSKLLSVRYAASAVYENGVWQLSQVEESDLRSNKQISGSQTISGEWKTGLTPDK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + R Y+ I + S++ R + + + PL + M L+A S
Sbjct: 235 LGVVALDPDALSIRGLYDYINYLKQSDQ----EASRYQLNMWSKLFAPLSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + + GI GF+ Y + I + PV AL+P L + +SI+
Sbjct: 291 FIFGPLRSVPAGVRIVIGISFGFLFYVLDQIFGPLSLVYRIPPVLGALLPSALFLFISIM 350
Query: 354 ILLQKE 359
+LL++
Sbjct: 351 LLLKRR 356
>gi|77457218|ref|YP_346723.1| permease YjgP/YjgQ [Pseudomonas fluorescens Pf0-1]
gi|77381221|gb|ABA72734.1| putative ABC transport system, membrane protein [Pseudomonas
fluorescens Pf0-1]
Length = 353
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/305 (20%), Positives = 125/305 (40%), Gaps = 41/305 (13%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI----WQLLNPFVVGSILLGI 114
P + ++P L+ ++ +L +SEL + RA G+SI W ++ P +V +L G+
Sbjct: 56 APRRLYDMLPMAALIGCLIGLGSLASSSELTVMRAAGVSIGRIVWAVMKPMLV-LMLAGV 114
Query: 115 FTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
+ P S + L Q +GD Q + W + Q D FI + P
Sbjct: 115 LIGEYVAPATESMAQANRSLAQ---GSGDAQSAKHGMWHR----QGDEFIHINSVQPNGR 167
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
++ T DK+ ++ A A D +L V ++ ++++ +N P+
Sbjct: 168 LY-GVTRYHFDKERHLLSSSFAKRAEFDTDHWQLTDVTTTKFH----ERSTEVVNTPV-- 220
Query: 235 DGFQKFSEQFASRSFYEII---KKMSFSNKSNIFH--------NYRAETQFYFLIVIPLM 283
+++ + + ++ + +S + H N R F+ ++ PL+
Sbjct: 221 ---ERWDVSLSPQLLSTVVMAPESLSITGLWGYIHYLADQGLSNGRYWLAFWVKVLQPLV 277
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFML-YTIITIMKSFGKSGILL---PVAA 339
A+ L+A S RS + + +F+G ++ +T + G S ++ P+ A
Sbjct: 278 TAALVLMAISFIFGPLRS----VTLGQRVFTGVLVGFTFRIVQDLLGPSSLVFGFSPLFA 333
Query: 340 ALIPV 344
L+P
Sbjct: 334 VLVPA 338
>gi|330950945|gb|EGH51205.1| permease YjgP/YjgQ [Pseudomonas syringae Cit 7]
Length = 353
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 25/232 (10%)
Query: 11 KYYLKTTLYFLLGAM-ILVFVIDLNEIQNQMGELPN-YSISRGAVLAATRVPLIIQQIIP 68
+Y K+ L +L + I++ ++ L ++MG++ + Y+++ P + +P
Sbjct: 6 RYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISDTYTLADALSYVMLTAPRRVYDTLP 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISI----WQLLNPFVVGSILLGIFTVLV---IN 121
L+ ++ L +SEL I RA G+SI W ++ P +LL I VLV +
Sbjct: 66 MAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPM----LLLMIAGVLVGEYVA 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
P A + + L Q +GD Q + W + Q D FI + P N + T
Sbjct: 122 PYAENQAQAARSLAQ---GSGDAQSARHGLWHR----QGDEFIHINTVQP-NGLMLGVTR 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
D + ++ A A D +LK V + D ++ +N P++
Sbjct: 174 YRFDDQRHMLTSSFAKEANFKTDYWELKDVTTTHFN----DGSTKVINTPVE 221
>gi|294795168|ref|ZP_06760302.1| putative membrane protein, YjgP/YjgQ family [Veillonella sp.
3_1_44]
gi|294453960|gb|EFG22335.1| putative membrane protein, YjgP/YjgQ family [Veillonella sp.
3_1_44]
Length = 363
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 125/307 (40%), Gaps = 30/307 (9%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P I+ P L+ +++ F L+ TSE+V+ RA G+S +L P + ++++ I V
Sbjct: 58 LPSIVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVA 117
Query: 119 VINPIATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ + ++ +Q N Q + I ++ + AK E
Sbjct: 118 FNEFVVPRTNNMYQTIVREQIMKNASPQTQNHIVLKTMNGNDLGTLMYAKSYNAETKKLS 177
Query: 178 DFTSITIDKKNKIIHRKDADLA------------IIYNDKV--KLKKVVEYQYGRIPIDK 223
T + K+ ++AD A IIY+ +++ ++++ +PI
Sbjct: 178 MITVQQFGEGGKLQQVENADTAVWNGQYWVMQNGIIYDISAGDGVERTMKFKEQSLPIK- 236
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIK--KMSFSNKSNIFHNYRAETQFYFLIVIP 281
+ P + Q+ E+ + IK K +++N + + E + Y IP
Sbjct: 237 -----SAPKDIQQDQRKPEELTIKELRHQIKAYKAAYTNANKL------EMEMYQRFTIP 285
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
L L+ A + L+ RS+ I F+ Y ++T + GK G L V AAL
Sbjct: 286 LASFVFALVGAPLGLQKQRSSSSISFGIS-ILIIFIYYGVMTFAGALGKGGALPTVFAAL 344
Query: 342 IPVILTI 348
IP L I
Sbjct: 345 IPDTLGI 351
>gi|159028498|emb|CAO87305.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 389
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 144/328 (43%), Gaps = 39/328 (11%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P I P L+ ++ + L SEL+ ++IGIS+++L+ P +V S+++ T
Sbjct: 72 KMPEFIVLAFPMSILLAALMAYSRLASDSELIAFKSIGISVYRLIIPAIVLSLIVTGLTY 131
Query: 118 LVINPIATSGE-KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL-----P 171
+ + +A + + + + + N D I + + + A+ +L
Sbjct: 132 IFNDYVAPAASYEANATMTKALRPNRKSFIEDNIIYPEYGKVRPPDGGEAQTVLRRLFYA 191
Query: 172 ENHIWEDFTSITIDKK-----NKIIHRKDADLAI------IYNDKVKL-------KKVVE 213
E ++ +TI + N+II + A I YN + L + +V
Sbjct: 192 ERFNGQEMLGLTILDRTQPEVNQIITSETASWNIEKNIWDFYNGTIYLIDPNGSYRNIVR 251
Query: 214 YQYGRIPIDKNSTTLNIPIK-MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET 272
+Q+ ++ + + T L++ + DG + Q +R + EI++ K+ + +
Sbjct: 252 FQHQQLALPR--TPLDLAFRGRDGSEMTLRQ--AREYLEILQLSGNPTKTR-----KLQV 302
Query: 273 QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG--FMLYTIITIMKSFGK 330
Q I +P + + +I A++ L SN+ ++GI F Y + + S G
Sbjct: 303 QIEQKISLPFVCLVFGMIGAALGLRPQNSNKA---TSFGICIVLIFSYYLLSFVTSSLGI 359
Query: 331 SGILLPVAAALIPVILTISLSILILLQK 358
G+L P+ AA +P IL ++ ++LLQ
Sbjct: 360 GGVLTPLMAAWLPNILGLTAGGILLLQS 387
>gi|238019692|ref|ZP_04600118.1| hypothetical protein VEIDISOL_01566 [Veillonella dispar ATCC 17748]
gi|237863733|gb|EEP65023.1| hypothetical protein VEIDISOL_01566 [Veillonella dispar ATCC 17748]
Length = 363
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 125/307 (40%), Gaps = 30/307 (9%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P I+ P L+ +++ F L+ TSE+V+ RA G+S +L P + ++++ I V
Sbjct: 58 LPSIVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVA 117
Query: 119 VINPIATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ + ++ +Q N Q + I ++ + AK E
Sbjct: 118 FNEFVVPRTNNMYQTIVREQIMKNASPQTQNHIVLKTMNGNDLGTLMYAKSYNAETKKLS 177
Query: 178 DFTSITIDKKNKIIHRKDADLA------------IIYNDKV--KLKKVVEYQYGRIPIDK 223
T + K+ ++AD A IIY+ +++ ++++ +PI
Sbjct: 178 MITVQQFGEGGKLQQVENADTAVWNGQYWVMQNGIIYDISAGDGVERTMKFKEQSLPIK- 236
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIK--KMSFSNKSNIFHNYRAETQFYFLIVIP 281
+ P + Q+ E+ + IK K +++N + + E + Y IP
Sbjct: 237 -----SAPKDIQQDQRKPEELTIKELRHQIKAYKAAYTNANKL------EMEMYQRFTIP 285
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
L L+ A + L+ RS+ + F+ Y ++T + GK G L V AAL
Sbjct: 286 LASFVFALVGAPLGLQKQRSSSSIGFGISILII-FIYYGVMTFAGALGKGGALPTVFAAL 344
Query: 342 IPVILTI 348
IP L I
Sbjct: 345 IPDTLGI 351
>gi|269797613|ref|YP_003311513.1| permease YjgP/YjgQ family protein [Veillonella parvula DSM 2008]
gi|269094242|gb|ACZ24233.1| permease YjgP/YjgQ family protein [Veillonella parvula DSM 2008]
Length = 363
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 126/307 (41%), Gaps = 30/307 (9%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P I+ P L+ +++ F L+ TSE+V+ RA G+S +L P + ++++ I V
Sbjct: 58 LPSIVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVA 117
Query: 119 VINPIATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ + ++ +Q N Q + I ++ + + AK E
Sbjct: 118 FNEFVVPRTNHMYQTIVREQIMKNASPQTQNHIVLKTMNGDELGTLMYAKSYDAETKQLS 177
Query: 178 DFTSITIDKKNKIIHRKDADLA------------IIYNDKV--KLKKVVEYQYGRIPIDK 223
T + K+ ++AD A IIY+ +++ ++++ +PI
Sbjct: 178 MITVQQFGEGGKLQQVENADTAIWNGQYWVMQNGIIYDLSAGNGVERTMKFKEQSLPIK- 236
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIK--KMSFSNKSNIFHNYRAETQFYFLIVIP 281
+ P + Q+ E+ + I+ K +++N + + E + Y IP
Sbjct: 237 -----SAPKDIQQDQRKPEELTIKELRHQIRAYKAAYTNANKL------EMEMYQRFTIP 285
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
L L+ A + L+ RS+ + F+ Y ++T + GK G L + AAL
Sbjct: 286 LASFVFALVGAPLGLQKQRSSSSIGFGISILII-FIYYGVMTFAGALGKGGALPTLLAAL 344
Query: 342 IPVILTI 348
IP L I
Sbjct: 345 IPDTLGI 351
>gi|307129164|ref|YP_003881180.1| hypothetical protein Dda3937_01300 [Dickeya dadantii 3937]
gi|306526693|gb|ADM96623.1| conserved inner membrane protein [Dickeya dadantii 3937]
Length = 356
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 78/363 (21%), Positives = 145/363 (39%), Gaps = 17/363 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY K T + L + L +I + ++G+ YS+ + VP I
Sbjct: 4 VLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GGYSVMGAGLYTLLSVPKDI 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ + +
Sbjct: 63 EIFFPMAALLGALLGLGTLATRSELVVMQASGFTRLQIAAAVMKTAIPLVLLTMAIGEWM 122
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A +GE++ + Q G + W + N F+ +++ EN +
Sbjct: 123 APAGEQMARNYRSQMMYGGSMLSTQGGLWAKDGND----FVYIQRVAGENEL-AGVNIYH 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-------GRIPIDKNSTTLNIPIKMDG 236
DK++K++ + A A+ N KL +V E G + T P K+
Sbjct: 178 FDKQSKLLSIRYAASALYENGTWKLSQVEESDLRDSKQIGGSQTVSGEWKTNLTPDKLGV 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + R ++ I + S + R + + + PL + M L+A S
Sbjct: 238 VALDPDALSIRGLFDYINYLHQSGQ----EASRYQLNMWSKLFAPLSVAVMMLMALSFIF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + + GI GF+ Y + I + PV A +P L + +SI++LL
Sbjct: 294 GPLRSVPAGVRIVIGISFGFLFYVLDQIFGPLSLVYHIPPVLGASLPSALFLFISIMLLL 353
Query: 357 QKE 359
++
Sbjct: 354 KRR 356
>gi|294102483|ref|YP_003554341.1| permease YjgP/YjgQ family protein [Aminobacterium colombiense DSM
12261]
gi|293617463|gb|ADE57617.1| permease YjgP/YjgQ family protein [Aminobacterium colombiense DSM
12261]
Length = 365
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 81/368 (22%), Positives = 165/368 (44%), Gaps = 45/368 (12%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP-NYSISRGAVLAA--TRV 59
GIL R+ +K + F+ G M V ++ Q+ + IS G VL +
Sbjct: 5 GILDRFIWKEMAGS---FVFGVMAFTMVFVAGDLLFQIASMIIEKGISIGVVLRLFIYSL 61
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P +I +P L+ ++ F L+ SE+V +A GIS ++L P +VGS+L+G+ + L+
Sbjct: 62 PEVIILTLPMACLLSALLTFGKLSTNSEIVALKASGISFQRILKPVIVGSLLVGL-SALI 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQK--SDIIPWMQISNPQQDIFIGAKKILPE----- 172
+N + + +++ +K + + SN Q + I +K+ P
Sbjct: 121 LNETVVPFSNRAAENLMRFEVMREKPSVLKEQVFLRDESNGQLNRVIYIEKLQPRKGTMT 180
Query: 173 NHIWEDFTS-----ITIDKKNKIIHRK----DADLAIIYN-DKVKLKKVVEYQYGRIPID 222
N + ++F IT+ K K D ++ + N KV+L +++ R D
Sbjct: 181 NVLVQEFEKGKLKRITVGKTGLWKDGKWWIDDGEVFQVTNGGKVELL----FRFERQQFD 236
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSF--SNKSNIFHNYRAETQFYFLIVI 280
N + + ++ S + + S E++ ++ + N+ + F+ +
Sbjct: 237 LNLSPQQV-------EQASRKPSEMSALELMAQIRLLQAQGGNLAPLW---VLFHLRFAV 286
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYG--IFSGFMLYTIITIMKSFGKSGILLPVA 338
P V + ++ AS+ + RS++ V +G + F+ Y ++++ K+FG++ + P+
Sbjct: 287 PWASVVLAILGASLGV---RSHRTGSGVGFGLSVMIVFVYYVVMSLCKAFGETEHMPPLL 343
Query: 339 AALIPVIL 346
AA +P +L
Sbjct: 344 AAWVPNVL 351
>gi|301060831|ref|ZP_07201645.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
gi|300445080|gb|EFK09031.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
Length = 383
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 82/382 (21%), Positives = 165/382 (43%), Gaps = 51/382 (13%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR------ 58
L+RY F+ T FL + +F++ + +M + ++RG L+
Sbjct: 3 LYRYIFREIWPT---FLASLFVFIFIM----MAARMLSITELIVTRGVHLSQVAGMVLFL 55
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P I+ +P +TL+ +V F L+ SE++ ++ GIS++Q+L P + S+ + V
Sbjct: 56 IPDILTFALPAVTLMSVVVAFLRLSADSEIIAMKSSGISLYQMLPPVIFFSLAACLACVA 115
Query: 119 VINPIATSGEKIGIDLI----QQWKDNGDKQKSDIIPWMQI-------SNPQQ---DIFI 164
+ A G + DL+ + D G K++ P+ + S ++ D+F+
Sbjct: 116 ISTFAAPWGNRSFKDLLFKIAETKADLGIKERIFCEPFENLVFYVNSFSREERMLKDVFV 175
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN 224
++ ++ T+ + + +II R + K + V + G I N
Sbjct: 176 VDRRD-------QEMTNTIVSDEAQIIPRPAERTITLLFLKGTIFMVEKNFEGSRTIKFN 228
Query: 225 STTLNIPIKMDGFQKFSEQFASR-------SFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ LNI G + ASR S ++I K+ + ++ ++ R +
Sbjct: 229 TYALNI-----GLKDVLADLASRKKAPHELSVNQLISKLKSTPNTDKEYS-RIMRELLEK 282
Query: 278 IVIPLMLVAMTLIAASVSLEF-SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
+ IPL + M +I + + R + V+ +F+ + Y + I++S +G L P
Sbjct: 283 LSIPLAVFFMGIIGVPLGAQIRGRGRSAGVGVSLVVFA--LYYLFLMIIRSIASTGALSP 340
Query: 337 VAAALIPVILTISLSILILLQK 358
A IP + I +S++ LL++
Sbjct: 341 AFAVWIPDLFLI-VSVVYLLRR 361
>gi|332307891|ref|YP_004435742.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175220|gb|AEE24474.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 353
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 79/358 (22%), Positives = 150/358 (41%), Gaps = 23/358 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMI-LVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
++ L +T LG ++ L +I E +G +Y ++ AV +P ++Q
Sbjct: 7 WYIARTLLSTTAMSLGVLVGLSALIKFIEQMKSVGR-GSYDMTVAAVYVFLSLPRELEQF 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P TL+ ++ L SELV+ ++ G S W ++ + +IL+ +F +++ +A
Sbjct: 66 FPMATLIGGLIGMGILASNSELVVMQSAGQSRWNIIISAMKSAILMVLFVMVIGEWVAPI 125
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E ++ Q G SD + W + D F+ +++ +N++ D + D
Sbjct: 126 SETKAKEIRTQAISGGSLFSSDRLVWAK----DGDNFVSIGEVVDKNNL-RDVSIYEFD- 179
Query: 187 KNKIIHRK--DADLAIIYNDKVKLKKV--VEYQYGRIPIDKN-----STTLNIPIKMDGF 237
N + RK A+ A +D +L V E+ RI ++ S++L P K+
Sbjct: 180 -NDLYLRKITTAEAANYQSDSWELSHVQSTEFSDNRIHVEDAADGAWSSSLT-PDKLGVV 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + R + + + N S YR + ++ P+ + M L+A S
Sbjct: 238 TVKPEALSIRGLIDYVNYL--ENNSQNSERYR--LALWRKVLQPISVGVMLLMALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS V G+ +GF + + S + P A++P I+ +SI +L
Sbjct: 294 PLRSVTMGARVIMGVLTGFGFFVSNEVFGSLSTVYHIPPFIGAILPSIVFTGISIHLL 351
>gi|330962174|gb|EGH62434.1| hypothetical protein PMA4326_26817 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 353
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 82/369 (22%), Positives = 151/369 (40%), Gaps = 49/369 (13%)
Query: 11 KYYLKTTLYFLLGAM-ILVFVIDLNEIQNQMGELPN-YSISRGAVLAATRVPLIIQQIIP 68
+Y K+ L +L + I++ ++ L ++MG++ + Y++ P + +P
Sbjct: 6 RYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISDTYTLPDALSYVMMTAPRRVYDTLP 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISI----WQLLNPFVVGSILLGIFTVLV---IN 121
L+ ++ +L +SEL I RA G+SI W ++ P +LL I VLV +
Sbjct: 66 MAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPM----LLLMIAGVLVGEYVA 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
P A + + L Q GD Q + W + Q + FI + P N + T
Sbjct: 122 PYAENKAQAARSLAQ---GLGDAQSAKHGLWHR----QGEEFIHINTVQP-NGLMLGVTR 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D + ++ A A D +LK V + D + +N P +++
Sbjct: 174 YRFDDQRHMLTSSFAKEAHFKTDYWELKDVTTTHFN----DGRTEVINTPD-----ERWD 224
Query: 242 EQFASRSFYEII---KKMSFSNKSNIFH--------NYRAETQFYFLIVIPLMLVAMTLI 290
+ + +I + +S S + H N R F+ ++ P + VA+ L+
Sbjct: 225 VSLSPQLLSTVIMPPESLSISGLWSYAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLM 284
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFML-YTIITIMKSFGKSGILL---PVAAALIPVIL 346
A S RS + + +F+G ++ +T I G S +L P+ A L+P +
Sbjct: 285 AISFIFGPLRS----VTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLLPAGV 340
Query: 347 TISLSILIL 355
+L+L
Sbjct: 341 CALAGVLLL 349
>gi|301059203|ref|ZP_07200141.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
gi|300446693|gb|EFK10520.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
Length = 358
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 80/361 (22%), Positives = 149/361 (41%), Gaps = 49/361 (13%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA--ATRVPL 61
+L RY K + K + L + L +ID + + + + ++A A ++P
Sbjct: 3 VLTRYLLKEFFKLLIVCQLVFIALYLMIDF---ASGIDDFIKAGAPKSVMIAYFAFKIPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI---FTVL 118
I Q++P L I++F + R +E+V +A G++ WQ+ P V+ + L + F
Sbjct: 60 IAGQMLPPAVLTTVIILFSLMKRNNEVVALKASGVNTWQVAQPLVLLAAFLSVVLFFFSE 119
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
I P A+S I I+ K++ + W + N I K+ + D
Sbjct: 120 TIVPYASSRCN-EIWRIEVKKEHPGRFHGQNHVWYKGKNCIYFI----KQFDSRKMMMVD 174
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVV-------------EYQYGRIPIDKNS 225
T D K KI R D AI + +++ + ++ + + +D+N
Sbjct: 175 PTFYFFDDKFKIARRIDGRRAIWKENGWQVQNGIVQNREKDGGYDLQKFDHLEVKLDENP 234
Query: 226 TTL---NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL---IV 279
N+ + G+++ ++FA R E Y A F L I
Sbjct: 235 KDFIRENVEPEEMGYRQL-KRFAQRLKLE---------------GYDANRYFVELNIKIA 278
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
P +++ MTL+ ++L P + V+ GI F+ I+ + ++ G +GIL P+ +
Sbjct: 279 FPFIVLIMTLMGIPIALWKKGMGTP-VAVSIGIALCFVYLLILGLARTLGFAGILPPLFS 337
Query: 340 A 340
A
Sbjct: 338 A 338
>gi|66044344|ref|YP_234185.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae B728a]
gi|63255051|gb|AAY36147.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae B728a]
gi|330969233|gb|EGH69299.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 353
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 19/229 (8%)
Query: 11 KYYLKTTLYFLLGAM-ILVFVIDLNEIQNQMGELPN-YSISRGAVLAATRVPLIIQQIIP 68
+Y K+ L +L + I++ ++ L ++MG++ + Y+++ P + +P
Sbjct: 6 RYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISDTYTLADALSYVMLTAPRRVYDTLP 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISI----WQLLNPFVVGSILLGIFTVLVINPIA 124
L+ ++ L +SEL I RA G+SI W ++ P +V ++ G+ + P A
Sbjct: 66 MAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLV-LMIAGVLVGEYVAPYA 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + L Q +GD Q + W + Q D FI + P N + T
Sbjct: 125 ENQAQAARSLAQ---GSGDAQSARHGLWHR----QGDEFIHINTVQP-NGLMLGVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
D + + A A D +LK V + D + +N P++
Sbjct: 177 DDQRHMQTSSFAKEANFKTDYWELKDVTTTHFN----DGRTEVINTPVE 221
>gi|74316600|ref|YP_314340.1| hypothetical protein Tbd_0582 [Thiobacillus denitrificans ATCC
25259]
gi|74056095|gb|AAZ96535.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 356
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/317 (18%), Positives = 126/317 (39%), Gaps = 38/317 (11%)
Query: 35 EIQNQMGEL-PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRA 93
++ ++G L Y + ++ VP + +I+P L+ + L SE + R
Sbjct: 31 DVVQELGNLRAGYGFGQATIVVLLNVPGHLYEILPVAALIGTLFALARLVGNSEYAVMRV 90
Query: 94 IGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM 153
G+S W++ F G+ V + + GE + W D Q+ +
Sbjct: 91 SGLSNWRVAAYF-------GVIGVWLALLVLLLGE-----YVAPWSDQA-AQRYKLSATR 137
Query: 154 QISNPQ---------QDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYND 204
+ Q FI ++++P+N + D++ ++ + A++A D
Sbjct: 138 SVVAQQFRSGLWVKDGSTFINVREVMPDNTL-RGIEIYGFDQEGRLDWIRAAEIATWRGD 196
Query: 205 KV-KLKKVVEYQYGRIPIDKNST------TLNIPIKMDGFQKFSEQFASRSFYEIIKKMS 257
K +L+ VVE ++ I + ++ P + E+ ++R+ + I +
Sbjct: 197 KTWQLQTVVETRFSADGIRAQRSANLAWRSVLTPEILSVLLVAPEKMSARALWRYIAHL- 255
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
K+N R E + + P ++ M LIA +++ R+ + V +GI +G
Sbjct: 256 ---KANGQKASRYELALWSKFISPFVIPIMMLIAMPFAIQSPRARGTSVKVFFGILAGLG 312
Query: 318 LYTIITIMKSFGKSGIL 334
+ + + FG G+L
Sbjct: 313 FHLLSRL---FGHLGLL 326
>gi|293610040|ref|ZP_06692341.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827272|gb|EFF85636.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325124205|gb|ADY83728.1| hypothetical protein BDGL_003142 [Acinetobacter calcoaceticus
PHEA-2]
Length = 356
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 11 KYYLKTTLYFLLGAMILVFVID-LNEIQNQMGEL-PNYSISRGAVLAATRVPLIIQQIIP 68
KY KTT + G +++ ++ L ++GEL P+Y+ + V P + +I+P
Sbjct: 9 KYVTKTTALAMFGTTVVLSILQVLFTYLGELGELKPDYNAWQALVYVLWGAPRYLYEILP 68
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
L+ ++ +L +SEL++ R++G+S+W+++ + ++LL I +
Sbjct: 69 ISALIGAVIGLGSLATSSELIVMRSVGVSLWRIVGWVMRSALLLIILS 116
>gi|166367866|ref|YP_001660139.1| hypothetical protein MAE_51250 [Microcystis aeruginosa NIES-843]
gi|166090239|dbj|BAG04947.1| hypothetical protein MAE_51250 [Microcystis aeruginosa NIES-843]
Length = 389
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 145/328 (44%), Gaps = 39/328 (11%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P I P L+ ++ + L SEL+ ++IGIS+++L+ P +V S+++ T
Sbjct: 72 KMPEFIVLAFPMSILLAALMAYSRLASDSELIALKSIGISVYRLIIPAIVLSLIVTGLTY 131
Query: 118 LVINPIATSGE-KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL-----P 171
+ + +A + + + + + N D I + + +Q + +L
Sbjct: 132 VFNDYVAPAASYEANATMTKALRPNRKSFIEDNIIYPEYGKVRQPDGGEPQTVLRRLFYA 191
Query: 172 ENHIWEDFTSITIDKK-----NKIIHRKDADLAI------IYNDKVKL-------KKVVE 213
E ++ +TI + N+II + A I YN + L + +V
Sbjct: 192 ERFNGQEMLGLTILDRTQPEVNQIITSESASWNIEKNIWDFYNGTIYLIDPKGSYRNIVR 251
Query: 214 YQYGRIPIDKNSTTLNIPIKM-DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET 272
+Q+ ++ + + T L++ + DG + Q +R + EI++ N + I + +
Sbjct: 252 FQHQQLALPR--TPLDLAFRARDGSEMTLRQ--AREYLEILQLSG--NPTKI---RKLQV 302
Query: 273 QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG--FMLYTIITIMKSFGK 330
Q I +P + + +I A++ L SN+ ++GI F Y + + S G
Sbjct: 303 QIEQKISLPFVCLVFGMIGAALGLRPQNSNKA---TSFGICIVLIFSYYLLSFVTSSLGI 359
Query: 331 SGILLPVAAALIPVILTISLSILILLQK 358
G+L P+ AA +P IL ++ ++LLQ
Sbjct: 360 GGVLTPLMAAWLPNILGLTAGGILLLQS 387
>gi|297569344|ref|YP_003690688.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
AHT2]
gi|296925259|gb|ADH86069.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
AHT2]
Length = 361
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/364 (18%), Positives = 149/364 (40%), Gaps = 21/364 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY F + + L G + + +ID E + + I ++PLI +Q+
Sbjct: 7 RYLFWQFTRNLALVLGGLVAIYLLIDFFERVDSFLD-AGLGIGTAITYLLLKIPLIFEQL 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV----LVINP 122
IP L+ I+ LNR +EL+ ++ G+S+ +++ P ++ ++ + ++ P
Sbjct: 66 IPVCLLLAGIITLGVLNRHNELMALKSGGLSVRRIIRPLLLAALFFSGLALAAGQWLLPP 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
++ + ++Q G ++ I + I+ A+ P + + DF+
Sbjct: 126 TLAETNRLWYEEVRQQTPEGIERNGRI-----YYRGAKGIYSFAQPDDPASGL-PDFSFT 179
Query: 183 TIDKKNKI-------IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+++ ++ I +A + + ++K+ + QY R I N T+ +P + +
Sbjct: 180 AWNEEYQLARLLTAAIAHWEAGRWTLLDGQLKV-LTADDQY-RTTI-FNEMTIELPERPE 236
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F A R E++ + S + R E Q + + + + I ++
Sbjct: 237 DFFLPPYALAERPLSELLARALAPEDSPRRYEARLELQQKISYIFLGLPLLLVGIPLLLA 296
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ R + V F ++ + +I ++ +G L P AA + +L SL +
Sbjct: 297 MHRGRGRDLALAVPASCIMAFAVWGLWSICQALASAGHLSPALAAWLVHLLAGSLGFYFI 356
Query: 356 LQKE 359
L+++
Sbjct: 357 LRQD 360
>gi|281357796|ref|ZP_06244282.1| permease YjgP/YjgQ family protein [Victivallis vadensis ATCC
BAA-548]
gi|281315743|gb|EFA99770.1| permease YjgP/YjgQ family protein [Victivallis vadensis ATCC
BAA-548]
Length = 371
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 35/172 (20%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFV------------ 106
+P+I+ +P+ +V ++VF L+ SE+ RA G+SI Q+++P +
Sbjct: 56 LPIILTFTVPWAVMVAVMLVFGRLSADSEITAMRACGVSILQIVSPILIITFFLMLFCLY 115
Query: 107 ----VGSILLG-----IFTVLVINPIA--TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI 155
VG LLG + T + P+A G++I + + D DK+ D I +QI
Sbjct: 116 LQVEVGPPLLGKSRTLMQTAAINQPLAIFEPGKQIEFENTIIYID--DKEGEDGIKGVQI 173
Query: 156 ---SNPQ---QDIFIGAKKILPENH----IWEDFTSITIDKKNKIIHRKDAD 197
S+PQ QDI K+L + I F + +DKK ++D D
Sbjct: 174 YTLSDPQTVAQDISAERGKLLVDKEKQLLIVRLFDCLVVDKKGAAEQQQDGD 225
>gi|86608831|ref|YP_477593.1| YjgP/YjgQ family protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557373|gb|ABD02330.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 370
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 71/353 (20%), Positives = 145/353 (41%), Gaps = 28/353 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATRVPL 61
+L RY F L L + G +L+ V L + ++ G +P ++ R VL +P
Sbjct: 10 LLERYLFGEMLTPVLAGVAGGTLLLLVGRLFTLAERLVEGSVPPLTVLRLLVL---DLPE 66
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P ++ L+ SE+ RA GI ++ P ++ + + + + N
Sbjct: 67 MVVLGMPIAAFFATMLTLGKLSGNSEITAMRAAGIPFSRIFRPLLLVGLAMSLSAFFISN 126
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K I I Q Q + + + + +++ +++ P + +D T
Sbjct: 127 -VLLPASKQQIRQIDQ--QALLAQATTPVQYDVFFKTEDNLWFFIRQVDPRLNTMQDVTI 183
Query: 182 ITIDK----KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT-----LNIPI 232
+ +D K +++ A A+ + L + + YG + T L +
Sbjct: 184 LRVDPLPGGKYQLVEVTLAAQAVWNGLEWSLSEGATHLYGPTGLSIAEQTFHRKPLQVSQ 243
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMTLIA 291
+ + + S E+ +++S +SN+ N +A T+F+ +PL + A
Sbjct: 244 DLAALMQPPVPPSELSLPELAERISRLARSNL--NTQALRTEFHMRFSLPLA----SFFA 297
Query: 292 ASVSLEFSRSNQPRII----VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+SL + R+ V +GI F Y ++++ +S G+ G L P AAA
Sbjct: 298 VLISLPLGSTTARRVGRYGGVVFGILLVFGYYVVLSVSRSLGEVGALPPWAAA 350
>gi|220932597|ref|YP_002509505.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
gi|219993907|gb|ACL70510.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
Length = 1040
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 135/310 (43%), Gaps = 17/310 (5%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P II Q P L + LNR +E R GIS+++L+ P ++ I++ T
Sbjct: 62 QLPEIIVQTFPIAILFATMSGMGRLNRENEFTALRMGGISLYRLILPLLILGIVISGMTY 121
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
L+ I + ++I+ K + DI + P +F + E++I +
Sbjct: 122 LLNEEIVPWTKHRAQNIIR--KSVLKEVPPDIKENVFFKGPDGRLFY-VGRFDKEDNIMK 178
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GRIPIDKNSTTLNIPIKM 234
T N A+L +Y +K LKK ++Y G + ++ + I I
Sbjct: 179 KIVVYTFKGDNGYPLIVTANLGEVYKEKWVLKKGFIHRYNGEGHLTMETRFDVMEIKINT 238
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ-----FYFLIVIPLMLVAMTL 289
+ F++Q + + + + ++F N + ++ + +PL + L
Sbjct: 239 EVHNFFADQKTP----DEMSREELKKEIDLFQNSGIDVHSLLVDYHLKLSMPLAALIFIL 294
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
I +SL S II + I F+ Y ++++ +SFG++G L PV AA +P I+
Sbjct: 295 IGTPLSLTSKDSRSFSII--FTIVVVFLYYFVMSLSRSFGRNGRLDPVLAAWLPNIIFSI 352
Query: 350 LSILILLQKE 359
+ I +L+ +E
Sbjct: 353 IGITLLIWRE 362
>gi|154707760|ref|YP_001424260.1| hypothetical membrane spanning protein [Coxiella burnetii Dugway
5J108-111]
gi|154357046|gb|ABS78508.1| hypothetical membrane spanning protein [Coxiella burnetii Dugway
5J108-111]
Length = 355
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 142/359 (39%), Gaps = 52/359 (14%)
Query: 21 LLG-AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVF 79
LLG M + F+ L++I L +Y + + + T++P + Q+ P + ++
Sbjct: 23 LLGIEMFMEFIGQLSQI-----GLVHYGLGQAFLYVLTQLPSDLYQLFPMAGFLGCLIGL 77
Query: 80 FNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI---FTVLVINP-IATSGEKIGIDLI 135
L +SEL++ R G+SI + V ++L+ + F VI P I SGE+ + +
Sbjct: 78 GRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVAMTFIGEVIAPQIEASGEETKLTAL 137
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI----- 190
K G K D+ W+ Q I IG ++D KNKI
Sbjct: 138 S--KAVGYKALGDV--WLH--GAQSFIHIG-----------------SVDAKNKISEVSQ 174
Query: 191 --IHRKDADLAIIYNDKVKLKKV--VEYQYGRIPIDKNSTT--------LNIPIKMDGFQ 238
I+ K L+ +Y K + K + Y + N TT L I D Q
Sbjct: 175 FFINNKHQLLSAVYAPKGEYVKGHWILYNVKQTQFTPNRTTEKKIAKFPLTIVFNPDHLQ 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + +S + + + ++ + R F+ + PL V M +
Sbjct: 235 QGRKMVDRQSIVGLYHTIRYRQQAGL-QTSRYVFAFWQRFIQPLTTVVMICLGVPFIFGS 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + GI GF Y + F + P+ AAL+P +L ++ +ILL+
Sbjct: 294 LRQASMGLRILTGIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVL-FAVGCVILLR 351
>gi|260551089|ref|ZP_05825293.1| permease YjgP/YjgQ family protein [Acinetobacter sp. RUH2624]
gi|260405856|gb|EEW99344.1| permease YjgP/YjgQ family protein [Acinetobacter sp. RUH2624]
Length = 356
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 11 KYYLKTTLYFLLGAMILVFVID-LNEIQNQMGEL-PNYSISRGAVLAATRVPLIIQQIIP 68
KY KTT + G I++ V+ L ++GEL P+Y+ + + P + +I+P
Sbjct: 9 KYVTKTTALAMFGTTIVLSVLQVLFTYLGELGELKPDYNAWQAFIYVLWGAPRYLYEILP 68
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
L+ ++ L SEL++ R++GIS+W+++ + ++LL
Sbjct: 69 ISALIGAVIGLGALASNSELIVMRSVGISLWRIVGWVMRSALLL 112
>gi|262373935|ref|ZP_06067212.1| permease YjgP/YjgQ family protein [Acinetobacter junii SH205]
gi|262310946|gb|EEY92033.1| permease YjgP/YjgQ family protein [Acinetobacter junii SH205]
Length = 356
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 11 KYYLKTTLYFLLGA-MILVFVIDLNEIQNQMGEL-PNYSISRGAVLAATRVPLIIQQIIP 68
K+ KTT+ +LG ++L F+ L ++G L PNY+ + + P + +I+P
Sbjct: 9 KHVTKTTVLAMLGTTLVLSFLQVLFTYLGELGSLKPNYNAWQAFLYVMWGAPRYLYEILP 68
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
L+ +++ L SEL++ R++GIS+W+++ + ++LL
Sbjct: 69 VAALIGSVLGLGALASNSELIVMRSVGISLWRIVGWVMRSALLL 112
>gi|332299879|ref|YP_004441800.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
DSM 20707]
gi|332176942|gb|AEE12632.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
DSM 20707]
Length = 361
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 75/359 (20%), Positives = 155/359 (43%), Gaps = 25/359 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL---AATRVPLII 63
RY F +L T YF +IL I ++ ++ +L + A++ A VP
Sbjct: 11 RYIFTQFLAT--YFFSIVLILAVAIAF-DVTEKLDKLLQPEVPLRAIIWDYYANFVPYYA 67
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P + I V L SE++ + G+S +LL P+++G+ ++ I T L+ + +
Sbjct: 68 NLFSPLFVFIAVIYVTSRLAENSEIIAILSCGVSFRRLLKPYMLGAAVIAILTFLLSSFV 127
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G +I ID ++ + ++ I MQ++ P+ +F+ E+ + F+
Sbjct: 128 IPPGNRIRIDFQNRYIKDKRITYANAIQ-MQVA-PETFMFMSYYN--DESKVGYTFSMDR 183
Query: 184 IDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGF- 237
+ K+ + R A+ +I+Y+ +L+ +G + N IPI F
Sbjct: 184 FEGKD-LKSRMMAN-SIVYDTLHNWQLQDYTITYFGERQDSLLRGNQLDTIIPITPKDFL 241
Query: 238 --QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ E ++ Y I++ + + + + +IP + +TL+ S+S
Sbjct: 242 VTEGDVEMLSTPQLYRSIQQQRMRGAATQLYAIELHKR---IAMIPASFI-LTLMGVSLS 297
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + +A G+ F+ +T+ SF +G + P+ AA +P ++ + +S ++
Sbjct: 298 AR-KRKGGMGLALAVGLSLSFLYILFMTVTSSFAVTGAMSPMVAAWLPNLVYLGISFVL 355
>gi|169634641|ref|YP_001708377.1| hypothetical protein ABSDF3306 [Acinetobacter baumannii SDF]
gi|169153433|emb|CAP02575.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter baumannii]
Length = 356
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 11 KYYLKTTLYFLLGAMILVFVID-LNEIQNQMGEL-PNYSISRGAVLAATRVPLIIQQIIP 68
KY KTT + G I++ V+ L ++GEL P+Y+ + + P + +I+P
Sbjct: 9 KYVTKTTALAMFGTTIVLSVLQILFTYLGELGELKPDYNAWQAFIYVLWGAPRYLYEILP 68
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
L+ ++ L SEL++ R++GIS+W+++ + ++LL
Sbjct: 69 ISALIGAVIGLGALASNSELIVMRSVGISLWRIVGWVMRSALLL 112
>gi|169797502|ref|YP_001715295.1| hypothetical protein ABAYE3538 [Acinetobacter baumannii AYE]
gi|184156574|ref|YP_001844913.1| permease [Acinetobacter baumannii ACICU]
gi|213155684|ref|YP_002317729.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB0057]
gi|215484938|ref|YP_002327177.1| hypothetical protein ABBFA_003301 [Acinetobacter baumannii
AB307-0294]
gi|239502070|ref|ZP_04661380.1| hypothetical protein AbauAB_07127 [Acinetobacter baumannii AB900]
gi|260556394|ref|ZP_05828613.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii ATCC
19606]
gi|301346543|ref|ZP_07227284.1| hypothetical protein AbauAB0_09866 [Acinetobacter baumannii AB056]
gi|301512955|ref|ZP_07238192.1| hypothetical protein AbauAB05_15269 [Acinetobacter baumannii AB058]
gi|301594833|ref|ZP_07239841.1| hypothetical protein AbauAB059_03452 [Acinetobacter baumannii
AB059]
gi|332851502|ref|ZP_08433499.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013150]
gi|332866798|ref|ZP_08437202.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013113]
gi|332874942|ref|ZP_08442793.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6014059]
gi|169150429|emb|CAM88326.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter baumannii AYE]
gi|183208168|gb|ACC55566.1| predicted permease [Acinetobacter baumannii ACICU]
gi|193076100|gb|ABO10704.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
gi|213054844|gb|ACJ39746.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB0057]
gi|213988459|gb|ACJ58758.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294]
gi|260410449|gb|EEX03748.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii ATCC
19606]
gi|322506461|gb|ADX01915.1| permease [Acinetobacter baumannii 1656-2]
gi|323516340|gb|ADX90721.1| permease [Acinetobacter baumannii TCDC-AB0715]
gi|332729955|gb|EGJ61286.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013150]
gi|332734406|gb|EGJ65526.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013113]
gi|332736885|gb|EGJ67861.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6014059]
Length = 356
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 11 KYYLKTTLYFLLGAMILVFVID-LNEIQNQMGEL-PNYSISRGAVLAATRVPLIIQQIIP 68
KY KTT + G I++ V+ L ++GEL P+Y+ + + P + +I+P
Sbjct: 9 KYVTKTTALAMFGTTIVLSVLQILFTYLGELGELKPDYNAWQAFIYVLWGAPRYLYEILP 68
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
L+ ++ L SEL++ R++GIS+W+++ + ++LL
Sbjct: 69 ISALIGAVIGLGALASNSELIVMRSVGISLWRIVGWVMRSALLL 112
>gi|254446878|ref|ZP_05060353.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
DG1235]
gi|198256303|gb|EDY80612.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
DG1235]
Length = 370
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 85/387 (21%), Positives = 160/387 (41%), Gaps = 65/387 (16%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQ 64
RY F +LK +L +M + + L EIQ+ +L +Y + G +L A P +
Sbjct: 7 RYVFTEWLKA-FALVLSSMFGLLI--LFEIQDSFTDLVSYDATGGQILFYYAILAPSFLT 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL-GIFTVLVINPI 123
+P LV + L+R +E V RA G+S++++ + S+L+ G L + I
Sbjct: 64 VTLPASILVSILYALGQLHRANEFVALRAAGMSVFRVTRSIWLASLLISGGLWYLNSSLI 123
Query: 124 ATSGEKIGIDLIQQWKDNG-----DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
S E+ LI + + D + ++ + N + EN +W
Sbjct: 124 PWSVEQSN-QLITTLRQDSEAKILDSDEIGVVEGLAFDNRR------------ENRMW-- 168
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
F + + K++ ++I+ ++ ++++V+ +YG D TL DG +
Sbjct: 169 FINRYSEYKSQAFG---ISVSIMDEERREVRRVMA-RYGYFDEDLGYWTL-----FDGRE 219
Query: 239 KFSEQFASRS----------------------FYEIIKKMSFSNKSNIFHNYRAETQ--- 273
+ ++ R F + K +SF I ++ E
Sbjct: 220 RLNDPDTGRERWPPFERLDAKDLTDDPTLMLLFGKRPKDLSFFQLRRITDSFTQEDNPNV 279
Query: 274 -FYFLIVIPLML-VAMTLIAASVSLEFSRSN---QPRIIVAYGIFSGFMLYTIITIMKSF 328
Y + + LM A LI A +++ F+ S P + V I F+ Y +++ +F
Sbjct: 280 LAYEVRLQALMASAASCLIVAGIAIPFAVSGVRTNPAVGVTKSIGLFFVFYIFTSVLNAF 339
Query: 329 GKSGILLPVAAALIPVILTISLSILIL 355
G+ G L P AA IP++ I L+ +++
Sbjct: 340 GREGALSPEMAAWIPMVAMILLAYVLM 366
>gi|227824355|ref|ZP_03989187.1| permease [Acidaminococcus sp. D21]
gi|226904854|gb|EEH90772.1| permease [Acidaminococcus sp. D21]
Length = 362
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 61/319 (19%), Positives = 127/319 (39%), Gaps = 33/319 (10%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P +I P L+ +++ L+ SE+ R+ G+S ++ P + ++ +F+V+
Sbjct: 58 MPEVINYTFPMSMLLASLLTMGQLSGNSEITAMRSGGMSFRRIAMPILAAGFVVSLFSVV 117
Query: 119 ----VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
V+ P E+I + Q+ K+N + D I IS Q A+ +
Sbjct: 118 WAEKVVPPAKAEYERI---IQQEIKNNTKPRTQDHILLKNISKGQLTRLTYARTFDEKAG 174
Query: 175 IWEDFTSITIDKKNKI-IHR-------------KDADLAIIYNDKVKLKKVVEYQYGRIP 220
+ +D T DK + I R + + I N++ L + + + +P
Sbjct: 175 VMKDITIEDWDKGRVVRIQRTPEAKWQNGTWIMEKGTITEITNEE-GLTRTMTFDKQVLP 233
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
I + T+ + K E + + I+++ + + Y +
Sbjct: 234 ITETPKTITLDQKDPDEMTIGEL---KMYIGILERQYQPTSKYVM-------EIYSRFTV 283
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
PL LI + ++ R+ + + + + F+ Y+I+T M G+ G++ P AA
Sbjct: 284 PLASFFFALIGVPLGVQSQRAGT-SMGLGFSVVIIFIYYSIMTFMTGLGQGGVIPPFIAA 342
Query: 341 LIPVILTISLSILILLQKE 359
+P L ++ QK+
Sbjct: 343 AVPNFLCGCAGAYLIWQKD 361
>gi|226951740|ref|ZP_03822204.1| permease YjgP/YjgQ-like protein [Acinetobacter sp. ATCC 27244]
gi|294648982|ref|ZP_06726430.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
gi|226837530|gb|EEH69913.1| permease YjgP/YjgQ-like protein [Acinetobacter sp. ATCC 27244]
gi|292825117|gb|EFF83872.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
Length = 356
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 11 KYYLKTTLYFLLGA-MILVFVIDLNEIQNQMGEL-PNYSISRGAVLAATRVPLIIQQIIP 68
K+ KTT+ +LG ++L F+ L ++G L PNY+ + + P + +I+P
Sbjct: 9 KHVTKTTVLAMLGTTLVLSFLQVLFTYLGELGSLKPNYNAWQAFLYVLWGAPRYLYEILP 68
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
L+ +++ L SEL++ R++GIS+W+++ + ++LL
Sbjct: 69 VAALIGSVLGLGALASNSELIVMRSVGISLWRIVGWVMRSALLL 112
>gi|313887034|ref|ZP_07820734.1| permease, YjgP/YjgQ family [Porphyromonas asaccharolytica
PR426713P-I]
gi|312923560|gb|EFR34369.1| permease, YjgP/YjgQ family [Porphyromonas asaccharolytica
PR426713P-I]
Length = 361
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 75/359 (20%), Positives = 154/359 (42%), Gaps = 25/359 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL---AATRVPLII 63
RY F +L T YF +IL I ++ ++ +L + A++ A VP
Sbjct: 11 RYIFTQFLAT--YFFSIVLILAVAIAF-DVTEKLDKLLQPEVPLRAIIWDYYANFVPYYA 67
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P + I V L SE++ + G+S +LL P+++G+ ++ I T L+ + +
Sbjct: 68 NLFSPLFVFIAVIYVTSRLAENSEIIAILSCGVSFRRLLKPYMLGAAVIAILTFLLSSFV 127
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G +I ID ++ + ++ I MQ++ P+ +F+ E+ + F+
Sbjct: 128 IPPGNRIRIDFQNRYIKDKRITYANAIQ-MQVA-PETFMFMSYYN--DESKVGYTFSMDR 183
Query: 184 IDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGF- 237
+ K+ + R A+ +I+Y+ +L+ +G + N IPI F
Sbjct: 184 FEGKD-LKSRMMAN-SIVYDTLHNWQLQDYTITYFGERQDSLLRGNQLDTIIPITPKDFL 241
Query: 238 --QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ E + Y I++ + + + + +IP + +TL+ S+S
Sbjct: 242 VTEGDVEMLTTPQLYRSIQQQRMRGAATQLYAIELHKR---IAMIPASFI-LTLMGVSLS 297
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + +A G+ F+ +T+ SF +G + P+ AA +P ++ + +S ++
Sbjct: 298 AR-KRKGGMGLALAVGLSLSFLYILFMTVTSSFAVTGAMSPMVAAWLPNLVYLGISFVL 355
>gi|299771879|ref|YP_003733905.1| hypothetical protein AOLE_18250 [Acinetobacter sp. DR1]
gi|298701967|gb|ADI92532.1| hypothetical protein AOLE_18250 [Acinetobacter sp. DR1]
Length = 356
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 11 KYYLKTTLYFLLGAMILVFVID-LNEIQNQMGEL-PNYSISRGAVLAATRVPLIIQQIIP 68
KY KTT + G +++ ++ L ++GEL P+Y+ + + P + +I+P
Sbjct: 9 KYVTKTTALAMFGTTVVLSILQILFTYLGELGELKPDYNAWQALIYVLWGAPRYLYEILP 68
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
L+ ++ +L +SEL++ R+ GIS+W+++ + ++LL I +
Sbjct: 69 ISALIGAVIGLGSLATSSELIVMRSAGISLWRIVGWVMRSALLLIILS 116
>gi|326559486|gb|EGE09909.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis 7169]
gi|326568201|gb|EGE18283.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis BC8]
Length = 369
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 82/376 (21%), Positives = 161/376 (42%), Gaps = 42/376 (11%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN----YSISRGAVLAATRVPLIIQQI 66
KY +++ L + GA++ ++++ + + + EL N Y+++ + R P + Q
Sbjct: 8 KYVIRSALLAMAGAVVGLWLVQM--VFAYLAELDNISETYTLTDALLFILYRSPYFLVQF 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISI-----WQLLNPFVVGSILLGI--FTVLV 119
IP TL+ ++ L SEL++ RA G+SI W +L + +I LG+ F +
Sbjct: 66 IPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGVNQFVLPT 125
Query: 120 INPIATS--GEKIGIDLIQ---QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
N A + + I LI W N D D++ IS + +G K +
Sbjct: 126 ANQHAAAIRADTIYDKLITIDGYWSVNHDGDNQDVV---YISYADNEGGLGEVK----RY 178
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK----LKKVVEYQYGRIPIDKNSTT--- 227
+D I K ++ +D ++ K + L + E G + + +
Sbjct: 179 QLKDGQLIAALKAKSGVYLPQSD-DVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKI 237
Query: 228 LNIPIKMDG---FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
L +PI K E + S Y + M+ ++ H E F+ ++ P +
Sbjct: 238 LTLPIAPTDVYLLTKEPEDLSLSSLYAHRQLMAHQGTRSLRH----ELAFWQKLLSPFAV 293
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF-GKSGILLPVAAALIP 343
+++ L+A+S RS + V + +G +L++ +T + F + L P+ AL+P
Sbjct: 294 LSLVLVASSFVFGSLRSQGLALRVVLALLTG-LLFSYLTDLTGFVALATGLSPLLMALVP 352
Query: 344 VILTISLSILILLQKE 359
++L+ + +L +K
Sbjct: 353 IVLSAMAGMYLLNRKS 368
>gi|262280664|ref|ZP_06058447.1| permease YjgP/YjgQ family protein [Acinetobacter calcoaceticus
RUH2202]
gi|262257564|gb|EEY76299.1| permease YjgP/YjgQ family protein [Acinetobacter calcoaceticus
RUH2202]
Length = 356
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 11 KYYLKTTLYFLLGAMILVFVID-LNEIQNQMGEL-PNYSISRGAVLAATRVPLIIQQIIP 68
KY KTT + G +++ ++ L ++GEL P+Y+ + + P + +I+P
Sbjct: 9 KYVTKTTALAMFGTTVVLSILQVLFTYLGELGELKPDYNAWQALIYVLWGAPRYLYEILP 68
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
L+ ++ +L +SEL++ R+ GIS+W+++ + ++LL I +
Sbjct: 69 ISALIGAVIGLGSLATSSELIVMRSAGISLWRIVGWVMRSALLLIILS 116
>gi|326567797|gb|EGE17901.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis 12P80B1]
Length = 369
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 82/376 (21%), Positives = 161/376 (42%), Gaps = 42/376 (11%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN----YSISRGAVLAATRVPLIIQQI 66
KY +++ L + GA++ ++++ + + + EL N Y+++ + R P + Q
Sbjct: 8 KYVIRSALLAMAGAVVGLWLVQM--VFAYLAELDNISETYTLTDALLFILYRSPYFLVQF 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISI-----WQLLNPFVVGSILLGI--FTVLV 119
IP TL+ ++ L SEL++ RA G+SI W +L + +I LG+ F +
Sbjct: 66 IPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGVNQFVLPT 125
Query: 120 INPIATS--GEKIGIDLIQ---QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
N A + + I LI W N D D++ IS + +G K +
Sbjct: 126 ANQHAATIRADTIYDKLITIDGYWSVNHDGDNQDVV---YISYADNEGGLGEVK----RY 178
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK----LKKVVEYQYGRIPIDKNSTT--- 227
+D I K ++ +D ++ K + L + E G + + +
Sbjct: 179 QLKDGQLIAALKAKSGVYLPQSD-DVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKI 237
Query: 228 LNIPIKMDG---FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
L +PI K E + S Y + M+ ++ H E F+ ++ P +
Sbjct: 238 LTLPIAPTDVYLLTKEPEDLSLSSLYAHRQLMAHQGTRSLRH----ELAFWQKLLSPFAV 293
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF-GKSGILLPVAAALIP 343
+++ L+A+S RS + V + +G +L++ +T + F + L P+ AL+P
Sbjct: 294 LSLVLVASSFVFGSLRSQGLALRVVLALLTG-LLFSYLTDLTGFVALATGLSPLLMALVP 352
Query: 344 VILTISLSILILLQKE 359
++L+ + +L +K
Sbjct: 353 IVLSAMAGMYLLNRKS 368
>gi|94266928|ref|ZP_01290581.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
gi|93452380|gb|EAT02999.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
Length = 359
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 70/139 (50%), Gaps = 10/139 (7%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI---LLGI 114
++PLII+Q++P L+ I+ LNR EL+ +A G+S +++ P ++ + LLG+
Sbjct: 56 KIPLIIEQLLPVALLLAGIITLGLLNRRHELMALQAAGLSTRRIIRPLLLAAFACTLLGM 115
Query: 115 FTV-LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
+ ++ P + ++ ++Q ++ G +++ I Q+ I+ EN
Sbjct: 116 ASSQWLLPPTMSELNRLWHQEVRQQENRGIERQGRI-----YYRGQEGIYSFRPAADSEN 170
Query: 174 HIWEDFTSITIDKKNKIIH 192
+ DF+ +T D+ ++
Sbjct: 171 RL-ADFSYLTWDRDYRLAQ 188
>gi|148265755|ref|YP_001232461.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
gi|146399255|gb|ABQ27888.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
Length = 359
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 134/349 (38%), Gaps = 24/349 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVF-VIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I RY Y K L LGA I ++ V+D E + N A+ TRVP I
Sbjct: 3 IFSRYIATAYAKM-LGLCLGAFIAIYLVVDFLEKIGRFAR-ANAEWKFIALFFLTRVPEI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV--- 119
I Q L+ ++ L+ SEL R G+S+ ++ P + + + T+ V
Sbjct: 61 ICQTASMAVLMATLLTLGMLSLNSELTAMRGCGLSLARITAPIFAIAFAVSLSTLFVSEF 120
Query: 120 INP-IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ P T G+ I LI + K S I + ++ + A+ P +
Sbjct: 121 VMPRCNTQGQYIREVLIDK------KSPSTFFRQQNIWHKDENYILKARLFDPATGNLKG 174
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVV--EYQYGRIPIDKNSTTLNIPIKMDG 236
T + + R +A + + + VV E G I K+ L + + +
Sbjct: 175 ITLWKTGTEMEPQQRIEATQGELRGNDWLFRDVVIREMAGGNIISTKSFPALLVKLNLKA 234
Query: 237 FQ-----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
KFS+ R K+ + + R Q + I + V M I
Sbjct: 235 ADLKVVGKFSDNMGIRELISYCDKL----RKGGYDPTRFLAQMHSRISLSFAPVIMAFIG 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
++ RS+ + + + GF + I +++ SFG++G+L P+ +A
Sbjct: 291 IPFAMRGGRSSGIALGIGTSLGIGFAYFIINSVILSFGQAGVLPPLVSA 339
>gi|94263394|ref|ZP_01287208.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
gi|93456230|gb|EAT06364.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
Length = 359
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 70/139 (50%), Gaps = 10/139 (7%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI---LLGI 114
++PLII+Q++P L+ I+ LNR EL+ +A G+S +++ P ++ + LLG+
Sbjct: 56 KIPLIIEQLLPVALLLAGIITLGLLNRRHELMALQAAGLSTRRIIRPLLLAAFACTLLGM 115
Query: 115 FTV-LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
+ ++ P + ++ ++Q ++ G +++ I Q+ I+ EN
Sbjct: 116 ASSQWLLPPTMSELNRLWHQEVRQQENRGIERQGRI-----YYRGQEGIYSFRPAADSEN 170
Query: 174 HIWEDFTSITIDKKNKIIH 192
+ DF+ +T D+ ++
Sbjct: 171 RL-ADFSYLTWDRDYRLAQ 188
>gi|220932585|ref|YP_002509493.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
gi|219993895|gb|ACL70498.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
Length = 365
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 125/297 (42%), Gaps = 22/297 (7%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P II P TL+ ++ F L+ E+ RA G+S+++++ P ++ +++ + T+
Sbjct: 57 KLPPIIVLTFPMATLMGTLMSFGRLSGDGEITAFRAGGVSVYKIVIPSLLVGLIMSVTTI 116
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSD-----IIPW-MQISNPQ----QDIFIGAK 167
+V + + ++ + K NG K + + P + P F G
Sbjct: 117 MVNEMVVPRANYLYDQIVWEIK-NGRKMPATQYDLTLTPLDRKYRRPDYILYTHRFNGET 175
Query: 168 KILPENHI--WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-N 224
I+ + ++ +E +T+ K K + + D YN + K E R+P K N
Sbjct: 176 GIMNDVYLQDYEKGVPVTLIKARKAVWQGDK--WHFYNGNIYYFKEGE----RVPALKFN 229
Query: 225 STTLNIPIKM-DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ PI K ++ SF E+ + + F + + +++ I IP
Sbjct: 230 EYVIKQPIYTPRRIGKMNKDIEDMSFKELGEYIQFLEEQGK-DTFEERVKYHQKIAIPFA 288
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
L+AA + ++ RS + I F+ YTI+T+ + G+ G + P A
Sbjct: 289 SFIFALLAAPLGIKPRRSGGTATGMGLSIIVIFIYYTIMTLGSALGERGTISPFFGA 345
>gi|68250306|ref|YP_249418.1| permease [Haemophilus influenzae 86-028NP]
gi|145633638|ref|ZP_01789365.1| predicted permease [Haemophilus influenzae 3655]
gi|148825754|ref|YP_001290507.1| leucyl aminopeptidase [Haemophilus influenzae PittEE]
gi|229847324|ref|ZP_04467426.1| leucyl aminopeptidase [Haemophilus influenzae 7P49H1]
gi|68058505|gb|AAX88758.1| predicted permease [Haemophilus influenzae 86-028NP]
gi|144985515|gb|EDJ92331.1| predicted permease [Haemophilus influenzae 3655]
gi|148715914|gb|ABQ98124.1| leucyl aminopeptidase [Haemophilus influenzae PittEE]
gi|229809749|gb|EEP45473.1| leucyl aminopeptidase [Haemophilus influenzae 7P49H1]
Length = 358
Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 81/362 (22%), Positives = 150/362 (41%), Gaps = 18/362 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY K L T L+ + L +I E +G+ Y I + + +P I+
Sbjct: 7 RYIGKSILGTIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIPKDIETF 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 66 FPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEWGIPQ 125
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E+ D+ + G W + + F+ +++ + + +D T D+
Sbjct: 126 TEQFARDMRAKALSGGSILSIKNGVWAKDGHH----FVFVRRVTDDTKL-DDIYIYTFDQ 180
Query: 187 KNKIIHRKDADLAIIYNDKVK--LKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQKFS 241
++ +I K A+ A D+ K L++V + I + S T + D S
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLRQVNHSTIMKDEIITTNHLSETWETSLTPDKLGAVS 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S S + +SF ++ R E F+ I P+ + M L+A S RS
Sbjct: 241 LRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRS 299
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA---ALIPVILTISLSILILLQK 358
+ GI GF+ Y + I+ G++ ++ + A ALIP +L I + +L +K
Sbjct: 300 VTAGARIVTGICVGFLFYVVNEIL---GQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRK 356
Query: 359 ED 360
D
Sbjct: 357 RD 358
>gi|192358887|ref|YP_001981939.1| putative permease, YjgP/YjgQ family [Cellvibrio japonicus Ueda107]
gi|190685052|gb|ACE82730.1| putative permease, YjgP/YjgQ family [Cellvibrio japonicus Ueda107]
Length = 352
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 82/371 (22%), Positives = 161/371 (43%), Gaps = 57/371 (15%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEI---QNQMGELPNYSISRGA-VLAATRVPLIIQQIIP 68
Y+ T++ + +LVF I L+ I +Q+G++ SR A + + VP + ++IP
Sbjct: 7 YISRTVFSAIALTLLVF-ISLDFIFSFIDQLGKIRGGYTSREAFIYMSLTVPRRLYELIP 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISI----WQLLNP---FVVGSILLGIFTVLVIN 121
+ L+ ++V L +SEL + RA G+S+ W L P F+V +++LG +
Sbjct: 66 YSCLIGSLVGLGLLANSSELTVIRAAGVSVKRIAWMALRPAFVFIVAAVILGEY------ 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A E++ + +DN + +++ W N + + ++ + +LP I+ T
Sbjct: 120 -VAPYTEQMADNRRLLVRDNWVRTTTNM--W----NREGNEYMHVQAVLPSGVIY-GLTR 171
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKV-KLKKVVEYQYGRIPIDKN---STTLNIPIKMDGF 237
D++ +++ AI + + + V + G + + S P+K +
Sbjct: 172 YQFDEQRRLVAASYTKQAIYQEEGYWQEEDVAVTRIGEQGVSNDLLPSRRWETPLKPNLL 231
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ---------FYFLIVIPLMLVAMT 288
+ MS SN N + NY E F+ + PL +++
Sbjct: 232 NILVMD---------PEDMSISNL-NYYSNYLKEQNLRPGNYALAFWQKTLQPLATMSLV 281
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM-KSFGKSGILL---PVAAALIPV 344
LIA S RS + + IF+G + ++ K G + ++ PV A LIP+
Sbjct: 282 LIAISFIFGPLRS----VTMGQRIFTGIVFGVGFQLLQKLMGPASMVFGFAPVFAVLIPI 337
Query: 345 ILTISLSILIL 355
++ I + + +L
Sbjct: 338 VICILVGVFLL 348
>gi|145635440|ref|ZP_01791141.1| predicted permease [Haemophilus influenzae PittAA]
gi|145641037|ref|ZP_01796618.1| predicted permease [Haemophilus influenzae R3021]
gi|145267314|gb|EDK07317.1| predicted permease [Haemophilus influenzae PittAA]
gi|145274198|gb|EDK14063.1| predicted permease [Haemophilus influenzae 22.4-21]
Length = 358
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 81/362 (22%), Positives = 150/362 (41%), Gaps = 18/362 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY K L T L+ + L +I E +G+ Y I + + +P I+
Sbjct: 7 RYIGKSILGTIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTMPKDIETF 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 66 FPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEWGIPQ 125
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E+ D+ + G W + + F+ +++ + + +D T D+
Sbjct: 126 TEQFARDMRAKALSGGSILSIKNGVWAKDGHH----FVFVRRVTDDTKL-DDIYIYTFDQ 180
Query: 187 KNKIIHRKDADLAIIYNDKVK--LKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQKFS 241
++ +I K A+ A D+ K L++V + I + S T + D S
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAVS 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S S + +SF ++ R E F+ I P+ + M L+A S RS
Sbjct: 241 LRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRS 299
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA---ALIPVILTISLSILILLQK 358
+ GI GF+ Y + I+ G++ ++ + A ALIP +L I + +L +K
Sbjct: 300 VTAGARIVTGICVGFLFYVVNEIL---GQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRK 356
Query: 359 ED 360
D
Sbjct: 357 RD 358
>gi|153209377|ref|ZP_01947372.1| putative permease [Coxiella burnetii 'MSU Goat Q177']
gi|165919052|ref|ZP_02219138.1| putative permease [Coxiella burnetii RSA 334]
gi|212218294|ref|YP_002305081.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuK_Q154]
gi|120575377|gb|EAX32001.1| putative permease [Coxiella burnetii 'MSU Goat Q177']
gi|165917247|gb|EDR35851.1| putative permease [Coxiella burnetii RSA 334]
gi|212012556|gb|ACJ19936.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuK_Q154]
Length = 355
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 80/359 (22%), Positives = 142/359 (39%), Gaps = 52/359 (14%)
Query: 21 LLG-AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVF 79
LLG M + F+ L++I + +Y + + + T++P + Q+ P + ++
Sbjct: 23 LLGIEMFMEFIGQLSQIGS-----VHYGLGQAFLYVLTQLPSDLYQLFPMAGFLGCLIGL 77
Query: 80 FNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI---FTVLVINP-IATSGEKIGIDLI 135
L +SEL++ R G+SI + V ++L+ + F VI P + SGE+ + +
Sbjct: 78 GRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVAMTFIGEVIAPQLGASGEETKLTAL 137
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI----- 190
K G K D+ W+ Q I IG ++D KNKI
Sbjct: 138 S--KAVGYKALGDV--WLH--GAQSFIHIG-----------------SVDAKNKISEVSQ 174
Query: 191 --IHRKDADLAIIYNDKVKLKKV--VEYQYGRIPIDKNSTT--------LNIPIKMDGFQ 238
I+ K L+ +Y K + K + Y + N TT L I D Q
Sbjct: 175 FFINNKHQLLSAVYAPKGEYVKGHWILYNVKQTQFTPNRTTEKKIAKFPLTIVFNPDHLQ 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + +S + + + ++ + R F+ + PL V M +
Sbjct: 235 QGRKMVDRQSIVGLYHTIRYRQQAGL-QTSRYVFAFWQRFIQPLTTVVMICLGVPFIFGS 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + GI GF Y + F + P+ AAL+P +L ++ +ILL+
Sbjct: 294 LRQASMGLRILTGIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVL-FAVGCVILLR 351
>gi|330873093|gb|EGH07242.1| hypothetical protein PSYMP_02386 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330963183|gb|EGH63443.1| hypothetical protein PSYAC_00745 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 353
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 79/358 (22%), Positives = 147/358 (41%), Gaps = 53/358 (14%)
Query: 26 ILVFVIDLNEIQNQMGELPN-YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
I++ ++ L ++MG++ + Y++ P + +P L+ ++ L
Sbjct: 22 IILGLVSLFAFIDEMGDINDTYTLLDALSYVMMTAPRRVYDTLPMAALIGCLIGLGTLAS 81
Query: 85 TSELVISRAIGISI----WQLLNP---FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ 137
+SEL I RA G+SI W ++ P +V +L+G + + P A + + L Q
Sbjct: 82 SSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVGEY----VAPYAENQAQAARSLAQ- 136
Query: 138 WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDAD 197
+GD Q + W + Q D FI + P N + T D + ++ A
Sbjct: 137 --GSGDAQSARHGLWHR----QGDEFIHINTVQP-NGLMLGVTRYRFDDQRHMLTSSFAK 189
Query: 198 LAIIYNDKVKLKKV--VEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEII-- 253
A D +LK V ++ GR + +N P +++ + + +I
Sbjct: 190 EAHFKTDYWELKDVSTTHFKEGRTEV------VNAPD-----ERWDVSLSPQLLSTVIMP 238
Query: 254 -KKMSFSNKSNIFH--------NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ +S S + H N R F+ ++ P + VA+ L+A S RS
Sbjct: 239 PESLSISGLWSYAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFGPLRS--- 295
Query: 305 RIIVAYGIFSGFML-YTIITIMKSFGKSGILL---PVAAALIPVILTISLSILILLQK 358
+ + +F+G ++ +T I G S +L P+ A LIP + + L LL++
Sbjct: 296 -VTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLIPAA-ACAFAGLYLLRR 351
>gi|313200016|ref|YP_004038674.1| permease [Methylovorus sp. MP688]
gi|312439332|gb|ADQ83438.1| permease YjgP/YjgQ family protein [Methylovorus sp. MP688]
Length = 356
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 78/376 (20%), Positives = 152/376 (40%), Gaps = 44/376 (11%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + + + + ++ + + DL + +G+ Y +++ V P +
Sbjct: 3 LLNRYLTQEIVSSIMLIMVALLAMFSFFDLIQELESIGK-GTYGLNKVLVFVLLSAPGHV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P LV + L+R SEL+I R GISI + + ++ + T V +
Sbjct: 62 YEVVPVAVLVGTMYALGQLSRHSELIILRVSGISIATIARSLLKVGLIFAVITFFVGEFV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN-----HIWE- 177
EK L Q D+ Q W++ F+ ++++P++ HI+E
Sbjct: 122 TPYSEKTAQRLRIQATDSVVAQDFRSGLWVKDGRS----FVNVEEVMPDSGLMNIHIYEF 177
Query: 178 ----------DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT 227
D + D +N H KD + VK + + Q+ +
Sbjct: 178 DDSFHLRTISDAKTGRFDGEN--WHLKDVQQTHFLDKTVKSEFFPQAQW---------QS 226
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
L P ++ E+ ++ + Y I +S +NK R E + +V PL + M
Sbjct: 227 LIRPELLNVLLVVPEKMSAWNLYFYIHHLS-ANKQK---TSRHEIALWSKMVYPLASLVM 282
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM-KSFGKSGIL---LPVAAALIP 343
++A L F Q + IF+G ML + ++ + F G+L P+ +A++P
Sbjct: 283 VVLA----LPFGFLQQRSGGASAKIFAGIMLGIVYQVLNRVFVHLGLLNDWSPLMSAVVP 338
Query: 344 VILTISLSILILLQKE 359
+L + + +L E
Sbjct: 339 TLLFLLAGLTMLFMAE 354
>gi|29654138|ref|NP_819830.1| putative permease [Coxiella burnetii RSA 493]
gi|161831591|ref|YP_001596891.1| putative permease [Coxiella burnetii RSA 331]
gi|29541404|gb|AAO90344.1| hypothetical membrane spanning protein [Coxiella burnetii RSA 493]
gi|161763458|gb|ABX79100.1| putative permease [Coxiella burnetii RSA 331]
Length = 355
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 135/341 (39%), Gaps = 47/341 (13%)
Query: 38 NQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS 97
+Q+G + +Y + + + T++P + Q+ P + ++ L +SEL++ R G+S
Sbjct: 37 SQIGSV-HYGLGQAFLYVLTQLPSDLYQLFPMAGFLGCLIGLGRLASSSELMVMRTAGVS 95
Query: 98 IWQLLNPFVVGSILLGI---FTVLVINP-IATSGEKIGIDLIQQWKDNGDKQKSDIIPWM 153
I + V ++L+ + F VI P + SGE+ L + K G K D+ W+
Sbjct: 96 IAGVTWAVVKAALLMMVVMTFIGEVIAPQLEASGEE--TKLTELSKAVGYKALGDV--WL 151
Query: 154 QISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI-------IHRKDADLAIIYNDKV 206
Q I IG ++D KNKI I+ K L+ +Y K
Sbjct: 152 H--GAQSFIHIG-----------------SVDAKNKISEVSQFFINNKHQLLSAVYAPKG 192
Query: 207 KLKKV--VEYQYGRIPIDKNSTT--------LNIPIKMDGFQKFSEQFASRSFYEIIKKM 256
+ K + Y + N TT L I D Q+ + +S + +
Sbjct: 193 EYVKGHWILYNVKQTQFTPNRTTEKKIAKFPLTIVFNPDHLQQGRKMVDRQSIVGLYHTI 252
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
+ ++ + R F+ + PL V M + R + + GI GF
Sbjct: 253 RYHQQAGL-QTSRYVFAFWQRFIQPLTTVVMICLGVPFIFGSLRQASMGLRILTGIVIGF 311
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
Y + F + P+ AAL+P +L ++ +ILL+
Sbjct: 312 AFYMLNQFFGPFAMVYQIPPIFAALMPTVL-FAVGCVILLR 351
>gi|85709345|ref|ZP_01040410.1| predicted permease [Erythrobacter sp. NAP1]
gi|85688055|gb|EAQ28059.1| predicted permease [Erythrobacter sp. NAP1]
Length = 365
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 59/319 (18%), Positives = 128/319 (40%), Gaps = 27/319 (8%)
Query: 55 AATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI 114
A+ R+P +I + +P+ L+ ++ LN+ SE+V +A G+S Q+L P ++ + ++ +
Sbjct: 61 ASLRIPQLIARFLPYSVLLATLITLVTLNQNSEVVAMKAAGLSAHQVLAPLLLTAAVVAL 120
Query: 115 FTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI-GAKKILPEN 173
+ + T ++ W + + P + S + ++++ IL +
Sbjct: 121 ISFAFNERVVTRANST----LKAW------EAVEYGPIPEQSGVRANVYLTDGDNILTAS 170
Query: 174 HIWEDFTSITIDK-------KNKIIHRK-DADLAIIYNDKVKLKKVVEYQYGRI---PID 222
+ I +D II + A A +L+ + G PID
Sbjct: 171 SLIGSGEDIELDNVTWYSRAPGGIISEQIKATGATYAAPGWRLENPKRFDVGSATTEPID 230
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKM-SFSNKSNIFHNYRAETQFYFLIVIP 281
+ + Q ++SF+E+ + + ++ RA +++ + P
Sbjct: 231 DVVVGEGLTPEQIDLQSVDPD--AQSFWELSETIDAYEAAGRRTSEMRA--KWWHRLSGP 286
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
L + M L+ + + +RS Q + G+ GF + + + G G P AA
Sbjct: 287 LSALLMPLLGSVAAFGLARSGQLFVRAVIGMALGFAYFVVDNAALAMGSFGGYPPFLAAW 346
Query: 342 IPVILTISLSILILLQKED 360
P L + + +L++ E+
Sbjct: 347 APFFLFLLVGETVLIRTEE 365
>gi|229588598|ref|YP_002870717.1| putative ABC transporter membrane protein [Pseudomonas fluorescens
SBW25]
gi|229360464|emb|CAY47321.1| putative ABC transport system, membrane protein [Pseudomonas
fluorescens SBW25]
Length = 359
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 21/185 (11%)
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI----WQLLNPFVV---G 108
A P + ++P L+ ++ +L +SEL I RA G+SI W ++ P ++
Sbjct: 53 ALTAPRRLYDMMPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMAC 112
Query: 109 SILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK 168
S+L+G + + P A + + L Q +GD Q S W + Q + FI
Sbjct: 113 SVLIGEY----VAPPAETTAQANRALAQ---GSGDAQSSKHGLWHR----QGEEFIHINA 161
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT- 227
+ P + T T DK+ ++ A A +K +L V + I N+ T
Sbjct: 162 VQPGGLL-IGVTRYTFDKERHLLESSFAKRAQYSGEKWQLSDVTTTYFRNIGQGTNARTE 220
Query: 228 -LNIP 231
+N+P
Sbjct: 221 VINVP 225
>gi|85060085|ref|YP_455787.1| putative transport protein [Sodalis glossinidius str. 'morsitans']
gi|84780605|dbj|BAE75382.1| putative transport protein [Sodalis glossinidius str. 'morsitans']
Length = 356
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 80/364 (21%), Positives = 143/364 (39%), Gaps = 17/364 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I E ++G+ YS + +P
Sbjct: 1 MFGVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVEQLRKVGQ-GGYSALGAGLFTLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ +L SELV+ +A G S Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMSALLGALLGLGSLATRSELVVMQASGFSRMQVAGSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +GE++ + Q G + W + N FI ++++ + +
Sbjct: 120 EWVAPAGEQMAYNYRTQMIYGGSMLSTQNGLWAKDGND----FIFIERVVGSDEL-AGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-------GRIPIDKNSTTLNIPIK 233
DK +++ + A A N KL +V E GR ++ T P K
Sbjct: 175 IYHFDKADRLQSLRYAATATFSNGSWKLSQVDESDLTNDKQITGRQTLNGEWKTNLTPDK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + Y + + S + + R + + I P + M L+A S
Sbjct: 235 LGVVALEPNSLSISGLYNYVNYLKQSGQ----ESNRYQLNMWSKIFSPFSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + V GI GF+ Y + I + PV AL+P + + +SI+
Sbjct: 291 FIFGPLRSVPMGVRVVIGISFGFLFYVLDQIFGPLSLVYNMPPVFGALLPSMAFLIISIV 350
Query: 354 ILLQ 357
+LL+
Sbjct: 351 MLLR 354
>gi|303258295|ref|ZP_07344302.1| permease YjgP/YjgQ [Burkholderiales bacterium 1_1_47]
gi|302859048|gb|EFL82132.1| permease YjgP/YjgQ [Burkholderiales bacterium 1_1_47]
Length = 378
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 71/358 (19%), Positives = 137/358 (38%), Gaps = 63/358 (17%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ R F +K++L+ LL + L DL +G +YS+ + +L A +P
Sbjct: 3 IVSRMIFAQIMKSSLFVLLTLVALFAFFDLIGQSGNIGT--SYSMGQAFLLTALILPTRC 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P ++ +I L TS+ + R GI W+ ++ I+L I L+ N +
Sbjct: 61 YEVLPIAVMLGSIFTLSRLASTSQFTVLRVSGIGPWRFCGMLLMPGIVLVICAYLLGNLV 120
Query: 124 ATSGEKIGIDL---IQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENH 174
A +++ + I G + S I W+ + P++ F+ +++ P
Sbjct: 121 APPAQRLAKEFKLDISGSAFTGKELDSGI--WVRDVQRNEAGEPKKISFVNVQRLRPGEA 178
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK--LKKVVEYQYGRIPIDKNSTTLNIPI 232
+ D+ D+ + + A Y+++ L VVE +P +
Sbjct: 179 AY-DWVVYVFDRPDHLTSIVTAKSG-TYSEQEGWVLHDVVEETVPTLPKESR-------- 228
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNK--SNIF---------------HNY------- 268
EQ +R +++K M + NIF H Y
Sbjct: 229 ---------EQTQARVERKVMKSMVWGKSLDGNIFGLLMIKPEDMSLQELHYYIEYLKEN 279
Query: 269 -----RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTI 321
R +T F+ PL ++ M L++ + + +R+ I + GI G Y +
Sbjct: 280 GQTYKRFDTAFWSKAFYPLAILVMLLLSMPFAYQNARAGGMAIKIFCGIMIGIFYYAL 337
>gi|21674368|ref|NP_662433.1| hypothetical protein CT1549 [Chlorobium tepidum TLS]
gi|21647546|gb|AAM72775.1| membrane protein, putative [Chlorobium tepidum TLS]
Length = 384
Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 84/371 (22%), Positives = 162/371 (43%), Gaps = 42/371 (11%)
Query: 1 MPG-----ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL- 54
+PG I+ RY + +L T F L + +F++ +N ++N + + IS G +L
Sbjct: 21 LPGFGNFTIIDRYIARQFL-TIFLFALASFAALFIL-INLVEN-LDRFLDRHISFGRILI 77
Query: 55 -AATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG 113
+ +P P L+ ++ V L+ SEL ++ G+S+ +L+ PF++ ++ +
Sbjct: 78 YYLSGLPDTFLLTSPLSVLLASLFVTGKLSMQSELPALKSAGMSLSRLMKPFLLVTMAIA 137
Query: 114 IFTVLVINPIATS----GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKI 169
+ IA + + +++ +DNG++ + I I A KI
Sbjct: 138 ALNTINSCFIAPAMYDWSKGFEKRYLKKQQDNGEEP-------LHIRESNNRILTVA-KI 189
Query: 170 LPENHIWEDFTSITIDKKN--KIIHRKDAD-LAII--------YNDKVK-LKKVVEYQYG 217
P+ + T+++++ N +I+ R DAD L II YN K + K E
Sbjct: 190 GPDK---KSATTVSLETFNGSQIVSRIDADSLRIITRHKYWIFYNTKQRTFSKGAETLVT 246
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
R D TL + + + F+ + + I + +S + RA + +
Sbjct: 247 RAGAD----TLKLSLAPNTFKMIDTDPDEMNIVQHIDFIWQKARSGLPGLERATVKLHTK 302
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
+ +PL + + LI +S + RS + ++ + G + ++ + S G G+L PV
Sbjct: 303 LALPLASMIIVLIGVPLSSKKKRSGLA-VEISISLLIGLLYLGMLKTIGSLGYDGLLNPV 361
Query: 338 AAALIPVILTI 348
AA +P IL I
Sbjct: 362 LAAWLPDILFI 372
>gi|303230241|ref|ZP_07317009.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-134-V-Col7a]
gi|303231004|ref|ZP_07317747.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-049-V-Sch6]
gi|302514386|gb|EFL56385.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-049-V-Sch6]
gi|302515167|gb|EFL57141.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-134-V-Col7a]
Length = 363
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 127/307 (41%), Gaps = 30/307 (9%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P II P L+ +++ F L+ TSE+V+ RA G+S +L P + ++L+ I V
Sbjct: 58 MPSIILLTFPMSVLLGSLMAFSRLSSTSEIVVMRAGGLSFLRLAMPVYILALLISIGAVA 117
Query: 119 VINPIATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ + ++ ++ N Q + I ++ + AK E+
Sbjct: 118 FNEFVVPRTNNMYQTIVREEIMKNASPQTQNHIVLKSMNGDNLSTLMYAKHYDSESKKLS 177
Query: 178 DFTSITIDKKNKIIHRKDADLA------------IIYNDKV--KLKKVVEYQYGRIPIDK 223
T + K ++ ++A+ A IIY+ +++ ++++ +PI
Sbjct: 178 MITVQQFNDKGELQQVENAENAEWNGQVWVMHSGIIYDVSAGEGVERTMKFKEQVLPIKS 237
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIK--KMSFSNKSNIFHNYRAETQFYFLIVIP 281
+ P ++ Q+ E+ + IK K +++N + + E + Y IP
Sbjct: 238 S------PNEVQQDQRKPEELTIKELRHQIKAYKAAYTNSNKL------EMEMYQRFTIP 285
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
L L+ A + L+ RS+ + F+ Y ++T + GK G L AA+
Sbjct: 286 LASFVFALVGAPLGLQKQRSSSSIGFGISILII-FIYYGVMTFAGALGKGGALPTWMAAM 344
Query: 342 IPVILTI 348
IP L I
Sbjct: 345 IPDTLGI 351
>gi|119503286|ref|ZP_01625370.1| hypothetical protein MGP2080_11498 [marine gamma proteobacterium
HTCC2080]
gi|119460932|gb|EAW42023.1| hypothetical protein MGP2080_11498 [marine gamma proteobacterium
HTCC2080]
Length = 353
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 86/205 (41%), Gaps = 7/205 (3%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGEL-PNYSISRGAVLAATRVPLIIQQI 66
F +Y L +G + ++ +D L+ + +++ +L P+Y + + A +P + +
Sbjct: 4 FDRYLAGNVLGATVGVLAVLVGLDALSSVIDELDDLSPDYGFTDALIYVAFTLPRRLHEY 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+PF L+ +V L TSEL + RA G S+ QL + ++LL + LV ++
Sbjct: 64 VPFAALIGALVGLGRLAATSELTVVRAAGRSLPQLALGTLRPALLLAVLGFLVGEFVSPV 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E+ + K +S + N D FI + I +T D+
Sbjct: 124 AEQFAVSH----KALAQGSQSSFTGRGGVWNRDGDTFIHVSAV-ERGGIIHGVQLLTFDE 178
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKV 211
+ ++ A+ + L+KV
Sbjct: 179 ERRLTRSLRAERGTYQGGQWLLEKV 203
>gi|302342717|ref|YP_003807246.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
gi|301639330|gb|ADK84652.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
Length = 359
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 121/301 (40%), Gaps = 29/301 (9%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
+VP II + P L+ I+ +++ E + ++ G+S+ + P V+ ++ + + T
Sbjct: 56 QVPEIISLLSPLAVLLGTIIALGLMSKRGETIAIKSSGVSVMRFTLPIVLLALTITLSTA 115
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL------P 171
L IN +A G K + I W +K+ S + ++ F G I P
Sbjct: 116 L-INEMALPGTKARTNHI--WNVMVEKRPSSAY------SHEKFWFKGNGSIYHIGLFDP 166
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK------VKLKKVVEYQYGRIPIDKNS 225
+ + D + R DA A K + +++ + Y + D+
Sbjct: 167 LGQVLSNVVYYRFDDHFNLAERIDARRATYIGGKWLFFLGLHQQRLPQGGYSAVVFDELE 226
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
N+P + + F + S+ E+ + + + R + + I P + V
Sbjct: 227 K--NLPERPEDFSRLSKPSEEMGLAELSDHVGKVDAEG-YDTRRYQVDMHCKISYPFICV 283
Query: 286 AMTLIAASVSL--EFSRSNQPRIIVAYGIFSGFMLYTIITIMKS-FGKSGILLPVAAALI 342
M LI ++L E R+ P I+V G+ + + +S FG G+L P+ AA +
Sbjct: 284 IMALIGIPLALFRERGRALAPGIVV--GMLVALVYWISFGYARSIFGYGGVLPPMMAAWL 341
Query: 343 P 343
P
Sbjct: 342 P 342
>gi|170079022|ref|YP_001735660.1| permease, YjgP/YjgQ family protein [Synechococcus sp. PCC 7002]
gi|169886691|gb|ACB00405.1| permease, YjgP/YjgQ family protein [Synechococcus sp. PCC 7002]
Length = 373
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 66/324 (20%), Positives = 143/324 (44%), Gaps = 37/324 (11%)
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
A ++P I +P L+ ++V+ L+ SE++ R++GIS+++L+ P ++ SIL
Sbjct: 62 ALKMPEFIGFALPMAVLLATLIVYSRLSGDSEIIALRSLGISVYRLVLPALIFSILATAI 121
Query: 116 TVLVIN---PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE 172
T + + P+A + ++ K + + I P N + +F A+ +
Sbjct: 122 TFVFKDQVIPLANAQATQTLEQAFLQKQAPFRDEKIIYPEYGEDNVLKRLFYAAEF---D 178
Query: 173 NHIWEDFTSITIDKKNKIIHR---KDA---DLA---------IIY--NDKVKLKKVVEYQ 215
+D T ID+ N +++ DA DLA IIY + + V+ +
Sbjct: 179 GQQMKDLT--IIDRSNGSLNQIVTADAAGWDLARNQWNFQNGIIYFIDIDGSYRNVLRF- 235
Query: 216 YGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY 275
D++ L+ +++D E + + ++ ++ + + +F
Sbjct: 236 ------DRHQIQLSNELRVDEELPKHEDMSLAQLQQYMQTVAADPDRDEAWLRKLRVRFQ 289
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG--FMLYTIITIMKSFGKSGI 333
I P + +A+ ++ A++ L R +G+ G F Y + ++ S G +G
Sbjct: 290 EKISFPFICLALGVVGAAIGL---RPQSAGKATGFGLCVGLIFGYYFLAFMISSVGVAGY 346
Query: 334 LLPVAAALIPVILTISLSILILLQ 357
L P+ AA +P ++ ++++ ++LQ
Sbjct: 347 LHPILAAWLPNLIVMAIASGLVLQ 370
>gi|194337384|ref|YP_002019178.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309861|gb|ACF44561.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 359
Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 137/315 (43%), Gaps = 37/315 (11%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P I+ + P L+ +I+V L+ + EL R+ G+S+ QLL PF+ G +L+ +F +L
Sbjct: 57 IPSILLVVSPVSALLSSILVAGKLSFSGELPAIRSAGVSMRQLLTPFITGGVLILLFNLL 116
Query: 119 VINPIATS--GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
I+ S EK + ++ Q++ I ++ N I + P+
Sbjct: 117 NAGWISPSTFAEKNHFEQRYLKRNPAQPQENRNIHILEPGNRMLSI----GTLDPDQ--- 169
Query: 177 EDFTSITIDK--KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ ++++I++ ++ R DAD ++ YN K + ++ R K+ T P+
Sbjct: 170 AEISAVSIEEFSGARLKSRTDAD-SMRYNQKTG-EWILLNAAKRSFTGKDETFHLTPV-- 225
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ---------------FYFLIV 279
+ RS E+ + ++ N+ +YR T+ F+ I
Sbjct: 226 ---TSVKLALSPRSLSELNLQ---PDEMNLIRHYRYLTEKEGAGFAGLERSTVKFHNKIA 279
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
+P + + LI +S + R I + +F+GF+ + + G G++ P+ A
Sbjct: 280 LPFASLIIILIGVPLSAKKKRGGLASEI-SITLFAGFLFMGVQKTIAIAGYQGMINPMLA 338
Query: 340 ALIPVILTISLSILI 354
A +P IL + + I
Sbjct: 339 AWLPNILFLGIGYAI 353
>gi|218246939|ref|YP_002372310.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8801]
gi|257060003|ref|YP_003137891.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8802]
gi|218167417|gb|ACK66154.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8801]
gi|256590169|gb|ACV01056.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8802]
Length = 393
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 136/314 (43%), Gaps = 37/314 (11%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P I P L+ ++ + L+ SEL+ R++GISI++L+ P ++ S+L+
Sbjct: 74 KMPGFIVLAFPMAMLLAALMAYSRLSSDSELIAMRSLGISIYRLVIPAILFSLLVTGLAF 133
Query: 118 LV---INPIATSGEKIGID-LIQQWKDNGDKQKSDIIPWMQISNPQ--QDIFIGAKKILP 171
+V I P AT + ++ + + + + +Q++ I P +I + ++ + ++
Sbjct: 134 IVNDWIAPAATHEAAVTLEKAVSKERPSFAEQRNIIYPEYRIIQQEDGKETTVLSRLFYA 193
Query: 172 ENHIWEDFTSITI-----DKKNKIIHRKDADLAIIYND-------------KVKLKKVVE 213
EN E+ +TI + N+I+ + A + N + +V
Sbjct: 194 ENFNGEEMEELTILDRSQEDVNQIVTSQSATWNVAQNTWDFFNGTIYIIAPDGSYRNIVR 253
Query: 214 YQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ 273
+Q+ ++ + + L++ + F + S A Y + K+S NK + + E +
Sbjct: 254 FQHQQLKLPR--APLDLANRRQNFTEMS--IAQTKEYLEVMKLS-GNKERV---RKVEVR 305
Query: 274 FYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG--FMLYTIITIMKSFGKS 331
+P + + L+ A++ + R ++GI G F Y + + S G
Sbjct: 306 IQEKYALPFVCLVFGLVGAAMGV---RPQNTSRATSFGICVGLIFSYYLLSFVTSSLGIW 362
Query: 332 GILLPVAAALIPVI 345
GIL P AA P I
Sbjct: 363 GILTPFLAAWAPNI 376
>gi|118594057|ref|ZP_01551404.1| hypothetical protein MB2181_00275 [Methylophilales bacterium
HTCC2181]
gi|118439835|gb|EAV46462.1| hypothetical protein MB2181_00275 [Methylophilales bacterium
HTCC2181]
Length = 344
Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 69/337 (20%), Positives = 136/337 (40%), Gaps = 33/337 (9%)
Query: 39 QMGELP--NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGI 96
++G+L Y IS +P I + +P L+ ++ L+ SEL + RA G
Sbjct: 23 EIGDLGKGGYGISHAMTFVILSIPGHIYETVPLAVLIGSMYTIGQLSYNSELNVIRASGF 82
Query: 97 SIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS 156
SI ++ ++ IFT+L+ + IA + EK + ++ Q+ W++
Sbjct: 83 SIKKIATSLMITGGFFAIFTLLIGDLIAPNSEKNAQQMKIGLTNSVVGQEFSSGFWIKDG 142
Query: 157 NPQQDIFIGAKKILPEN-----HIWE---DFTSITIDKKNKIIHR------KDADLAIIY 202
F+ + +LP+ +I+E F TI K + ++ I+Y
Sbjct: 143 GN----FVNIENVLPDATLERINIYEFDSQFNLRTIVNAEKGAYEEGEWRLENITQTILY 198
Query: 203 NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS 262
+ VK K IP+ + + P M+ E+ +S + Y+ I + +N+
Sbjct: 199 ENSVKKKS--------IPMGSWKSLMR-PEMMNALIISPEKMSSFNLYKFISYLKINNQK 249
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
+ + E + I+ PLM + M + A RS + GI G
Sbjct: 250 ST----KYEVALWEKIIHPLMPLVMIIFAVPFGFLQERSGGKFFKMFIGIIIGIAYQITN 305
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
T+++ P ++L+P ++ + L + ++ + E
Sbjct: 306 TLIRHLSLLNDWQPFISSLVPTLIFLCLGLYLIKRFE 342
>gi|331001131|ref|ZP_08324762.1| permease, YjgP/YjgQ family [Parasutterella excrementihominis YIT
11859]
gi|329569436|gb|EGG51214.1| permease, YjgP/YjgQ family [Parasutterella excrementihominis YIT
11859]
Length = 378
Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 71/358 (19%), Positives = 137/358 (38%), Gaps = 63/358 (17%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ R F +K++L+ LL + L DL +G +YS+ + +L A +P
Sbjct: 3 IVSRMIFAQIMKSSLFVLLTLVALFAFFDLIGQSGNIGT--SYSMGQAFLLTALILPTRC 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P ++ +I L TS+ + R GI W+ ++ I+L I L+ N +
Sbjct: 61 YEVLPIAVMLGSIFTLSRLASTSQFTVLRVSGIGPWRFCGMLLMPGIVLVICAYLLGNLV 120
Query: 124 ATSGEKIGIDL---IQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENH 174
A +++ + I G + S I W+ + P++ F+ +++ P
Sbjct: 121 APPAQRLAKEFKLDISGSAFTGKELDSGI--WVRDVQRNEAGEPKKISFVNVQRLRPGEA 178
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK--LKKVVEYQYGRIPIDKNSTTLNIPI 232
+ D+ D+ + + A Y+++ L VVE +P +
Sbjct: 179 AY-DWVIYVFDRPDHLTSIVTAKSG-TYSEQEGWVLHDVVEETVPTLPKESR-------- 228
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNK--SNIF---------------HNY------- 268
EQ +R +++K M + NIF H Y
Sbjct: 229 ---------EQTQARVERKVMKSMVWGKSLDGNIFGLLMIKPEDMSLQELHYYIEYLKEN 279
Query: 269 -----RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTI 321
R +T F+ PL ++ M L++ + + +R+ I + GI G Y +
Sbjct: 280 GQTYKRFDTAFWSKAFYPLAILVMLLLSMPFAYQNARAGGMAIKIFCGIMIGIFYYAL 337
>gi|110637606|ref|YP_677813.1| permease [Cytophaga hutchinsonii ATCC 33406]
gi|110280287|gb|ABG58473.1| conserved hypothetical protein; possible permease [Cytophaga
hutchinsonii ATCC 33406]
Length = 359
Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 75/367 (20%), Positives = 144/367 (39%), Gaps = 40/367 (10%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAA---TRVPLIIQ 64
Y K +L T + +L M+++ VID+ E +M + + +S +L +P +
Sbjct: 7 YIIKKFLVTYFFVVLMFMLVITVIDITE---KMEDFMKHKLSIWFILVEYYFAFIPYMAN 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ P + I V NL +E++ + G+S+ +++ P+++GSIL+ + +
Sbjct: 64 LLSPITIFIATIFVTANLAARTEIIAMLSSGMSLTRIMYPYLIGSILIAFMVFYMSGWLI 123
Query: 125 TSGEKIGIDLIQQ-------WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
G K +D ++ ++ K+ ++ I + +I +G +
Sbjct: 124 PHGNKKRVDFEKKYIKSTFFYEGRNVHMKTAPTTYVYIESYNSEINVGYQ---------- 173
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---------TTL 228
FT TI + K A + +ND K ++ EY R D T L
Sbjct: 174 -FTLETIIDNRLVSKLKAARMN--WNDSTKKWRMEEYFIRRFTEDGKEEVFKGRGLDTAL 230
Query: 229 NI-PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
I P + E + I + NI + Q Y P ++ +
Sbjct: 231 TITPKDFEDTYMLFETYDMGELNNQIALLEARGSENISTYITEKYQRY---TYPFSVIIL 287
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
TLI S SR + +A+G F+ + +S G + P+ A+ IP I+
Sbjct: 288 TLIGVIASSRKSREGAG-LTIAFGFLLAFVYIIFMITSRSLANVGGIGPLFASWIPNIVF 346
Query: 348 ISLSILI 354
I + +++
Sbjct: 347 IVIGLIM 353
>gi|307155108|ref|YP_003890492.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
gi|306985336|gb|ADN17217.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
Length = 405
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 70/333 (21%), Positives = 134/333 (40%), Gaps = 48/333 (14%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG---- 113
RVP +P L+ ++ + L+ SEL+ R+ GIS+W+ P V+ S+++
Sbjct: 89 RVPEFFSYALPISVLLTTLMTYGRLSSESELIALRSCGISLWRATIPAVMLSLIVTGLTF 148
Query: 114 IFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDII--PWMQISNPQQDIFIGAKKIL- 170
IF V+ I + ++ + + Q DI + QI P K +
Sbjct: 149 IFNECVVPETNYRATGILVKVLHE--ERHFWQNKDIFYPNYEQIKLPNGQTLRQLKSLFY 206
Query: 171 PENHIWEDFTSITI-----DKKNKII------HRKDADLAIIYNDKVKL-------KKVV 212
E + S+TI ++ N+I+ D ++ ++ V L K+ V
Sbjct: 207 AEKFDGQKMQSLTIINWLGERLNEIVVSDTAQWNSDQNIWDFFDGTVYLIDGNAAYKEAV 266
Query: 213 EYQYGRIPIDKN----STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNY 268
+++ + P+ K ++ P +M+ FQ Y+ + + S K+ F
Sbjct: 267 TFKHQQFPLPKEAFEFASQGRSPYEMNLFQAVQ--------YKNLLQESGDTKNVRFFEV 318
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG--FMLYTIITIMK 326
R + + I P + + ++ A++ ++ Q + G+ G F Y +
Sbjct: 319 RIQQK----IAFPFICLVFGVMGAAIG---AKPQQMSRGTSLGLTVGIVFAYYMVNFFTG 371
Query: 327 SFGKSGILLPVAAALIPVILTISLSILILLQKE 359
SFG G+L P AA +P + + IL + E
Sbjct: 372 SFGMIGLLSPSMAAWLPNFFGVGIGGWILKKLE 404
>gi|77361338|ref|YP_340913.1| hypothetical protein PSHAa2422 [Pseudoalteromonas haloplanktis
TAC125]
gi|76876249|emb|CAI87471.1| putative membrane protein [Pseudoalteromonas haloplanktis TAC125]
Length = 370
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 63/330 (19%), Positives = 136/330 (41%), Gaps = 36/330 (10%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA--ATRVPL 61
+++RY LK+ + L M + L I +G+ SI VL+ A ++P
Sbjct: 2 LIFRYLTAEVLKSQVAVFLTLMTIFLSQKLVSI---LGDASEGSIPAKLVLSMIALKLPQ 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P + I+ + + SE+ + +A G+S W ++ ++ S+ L I +
Sbjct: 59 LASLILPLSIFLGIILAYSRIYADSEMTVLKACGVSEWYVVRVTLISSVGLAILAAALTM 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI-----GAKKI------- 169
+A + L +Q K + + Q N + +FI G K++
Sbjct: 119 HVAPWASEQEYQLKEQAKADAGLSALRAGRFQQTGNEKAVVFIHNIENGGKELNKVFVAQ 178
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
LP++ ++ + ++ +I ++ + ++ +D R D + LN
Sbjct: 179 LPDSEK-DNLARLVYAEQGVVIEAQNGEQQLVLSDG-----------KRYETDGLTPALN 226
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSF--SNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ F +S Q + +K+ +N+ + A Q+ + I IPL + +
Sbjct: 227 ----LTEFDGYSVQIREQEIEHQRRKLEAIPTNQLLALNTPEATAQWQWRIAIPLSIPLL 282
Query: 288 TLIAASVSLEFSRSNQ-PRIIVAYGIFSGF 316
TL+A +S+ R + +++ A ++ G+
Sbjct: 283 TLLAVPLSVVNPRQGKFAKLVPAISLYLGY 312
>gi|312959169|ref|ZP_07773688.1| membrane protein [Pseudomonas fluorescens WH6]
gi|311286939|gb|EFQ65501.1| membrane protein [Pseudomonas fluorescens WH6]
Length = 359
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 72/324 (22%), Positives = 134/324 (41%), Gaps = 48/324 (14%)
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI----WQLLNP---FVVGSILL 112
P + +++P L+ ++ +L SEL I RA G+SI W ++ P +V S+L+
Sbjct: 57 PRRLYEMMPMAALIGCLIGLGSLASNSELTIMRAAGVSIGRIVWAVMKPMLLLMVCSVLI 116
Query: 113 GIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE 172
G + + P A + + L Q +GD Q + W + Q D FI + P
Sbjct: 117 GEY----VAPPAEATAQANRALAQ---GSGDAQSAKHGLWHR----QGDEFIHINAVQPG 165
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT--LNI 230
+ T DK+ ++ A A N+K +L + + + ++T +N+
Sbjct: 166 GLL-IGVTRYRFDKERHMLSSSFAKSAQYSNEKWQLTDITTTYFRNVGQGTQASTEVINV 224
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSN--------KSNIFHNYRAETQFYFLIVIPL 282
P + G E + I + + S K +N R F+ ++ P+
Sbjct: 225 PSEEWGISLKPELL--NTVVMIPESLPISGLWSYIHYLKDQGLNNGRYWLAFWVKVLQPV 282
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS--------FGKSGIL 334
+ A+ L+A S RS + + +F+G ++ I I ++ FG S
Sbjct: 283 VTAALVLMAISFVFGPLRS----VTLGQRVFTGVLVGFIFQIAQNLLGPLSLVFGFS--- 335
Query: 335 LPVAAALIPVILTISLSILILLQK 358
P+ A L+P + +L+ LL++
Sbjct: 336 -PLFAVLVPTTIC-ALAGFWLLRR 357
>gi|302037952|ref|YP_003798274.1| putative YjgP/YjgQ family permease [Candidatus Nitrospira defluvii]
gi|300606016|emb|CBK42349.1| putative Permease, YjgP/YjgQ family [Candidatus Nitrospira
defluvii]
Length = 363
Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 72/377 (19%), Positives = 150/377 (39%), Gaps = 42/377 (11%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA--ATRVPL 61
IL+RY + Y+K G M + VID E ++ Y VLA ++P
Sbjct: 3 ILFRYMLREYVKIFGMCFAGLMTIYLVIDFFE---KVRRFLRYDAHALDVLAYFVLKMPA 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I QI P L+ ++ L+R+ E+ R+ GIS++ + +PF + LG TVL +
Sbjct: 60 ISYQIAPLAVLMATLLTIGLLSRSHEITAMRSCGISLYWITSPF----LFLG--TVLALV 113
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL------PENHI 175
A S I + L + + + + +P + + Q + +G + ++ P +
Sbjct: 114 LFAFSSTVIPLALAKAEQIKTTRIEKRAVP-VSVKAAQPWVSLGGQTLMNIDTIDPGGAV 172
Query: 176 WEDFTSITIDKKNKIIHRKDADLAI------IYNDKVKLK-------KVVEYQYGRIPID 222
+ ++ +A A+ + D ++ V +Q +P+
Sbjct: 173 LRKIRLYRLSPTFELEQIAEAQRAVYSPQGWVLEDGIRRSFRQDGTVSVNSFQTEPLPLA 232
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
+ +++D SE + ++ I R T +Y I P
Sbjct: 233 QIPDDFTTWLELD-----SETMTLPEIRAYVDRLHLGG--TILP--RLLTDYYGRIAFPC 283
Query: 283 MLVAMTLIAASVSLEFS--RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ M ++ ++SL + R + + + + GF ++ ++ + G+ G L P+ A
Sbjct: 284 VTFIMVVVGIALSLRRTGVRGSGMAMGIGQAMAVGFFYWSTHSVAIALGRGGALAPMLAG 343
Query: 341 LIPVILTISLSILILLQ 357
+ ++ ++ +LL+
Sbjct: 344 WMANLVFLTFGFYLLLK 360
>gi|148265754|ref|YP_001232460.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
gi|146399254|gb|ABQ27887.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
Length = 389
Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 79/373 (21%), Positives = 151/373 (40%), Gaps = 53/373 (14%)
Query: 14 LKTTLY----------FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR----- 58
+K TLY FLLG FV+ + ++ L +++G LA
Sbjct: 1 MKKTLYLYIFKEIPPPFLLGVATFTFVL----LMGRLLRLAEMVVTKGVPLADVLRMVFY 56
Query: 59 -VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP---FVVGSILLGI 114
+P + IP L+ ++ F L+ SE+ +A G+S++ LL P F + + L G
Sbjct: 57 LLPSFLLVTIPMAFLLAILLAFGRLSGDSEITAMKASGVSLYGLLPPVFCFALIAYLAGA 116
Query: 115 FTVLVINPIA-TSGEKIGIDLIQQWKDNGDKQK--SDIIPWMQI----SNPQQDIFIG-- 165
F + P TS +K+ +++++ G K+K +D P + I N Q+ G
Sbjct: 117 FITVYAVPWGNTSFKKLLVEVVEARASLGIKEKIFNDDFPGLVIYTDRYNQQKQTMSGIL 176
Query: 166 ---AKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
+ L + I+ I D K I + + +I ++VE++ + I+
Sbjct: 177 IQDERDPLEPSTIYARSGVINSDPATKSIRLRLDNGSIHRTQGKTGYRLVEFRNYDLNIN 236
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSN-KSNIFHNYRAETQFYFLIVIP 281
N Q ++ S E+ ++ + + + R E F +P
Sbjct: 237 LNQAA----------QTVNKNELDMSLAELRANLASGRFDAKMMRDMRLEYHRRF--SLP 284
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFML--YTIITIMKSFGKSGILLPVAA 339
+ L+ + ++ RS + + + G +L Y +++ K+ G+ +L P+ A
Sbjct: 285 FACLIFALVGMPLGIQNQRSGKA---AGFTMSIGLLLAYYIVLSAGKALGERELLSPLLA 341
Query: 340 ALIPVILTISLSI 352
P +L +SL I
Sbjct: 342 VWAPNLLFVSLGI 354
>gi|28868484|ref|NP_791103.1| hypothetical protein PSPTO_1273 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213968382|ref|ZP_03396526.1| membrane protein [Pseudomonas syringae pv. tomato T1]
gi|301384648|ref|ZP_07233066.1| hypothetical protein PsyrptM_18507 [Pseudomonas syringae pv. tomato
Max13]
gi|302058899|ref|ZP_07250440.1| hypothetical protein PsyrptK_02847 [Pseudomonas syringae pv. tomato
K40]
gi|302133012|ref|ZP_07259002.1| hypothetical protein PsyrptN_16559 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28851722|gb|AAO54798.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213927020|gb|EEB60571.1| membrane protein [Pseudomonas syringae pv. tomato T1]
gi|331015231|gb|EGH95287.1| hypothetical protein PLA106_04712 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 353
Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 131/324 (40%), Gaps = 52/324 (16%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI----WQLLNP---FVVGSIL 111
P + +P L+ ++ L +SEL I RA G+SI W ++ P +V +L
Sbjct: 56 APRRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWSVMKPMLLLMVAGVL 115
Query: 112 LGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP 171
+G + + P A + + L Q +GD Q + W + Q D FI + P
Sbjct: 116 VGEY----VAPYAENQAQAARSLAQ---GSGDAQSARHGLWHR----QGDEFIHINTVQP 164
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKV--VEYQYGRIPIDKNSTTLN 229
N + T D + ++ A A D +LK V ++ GR + +N
Sbjct: 165 -NGLMLGVTRYRFDDQRHMLTSSFAKEAHFKTDYWELKDVSTTHFKEGRTEV------VN 217
Query: 230 IPIKMDGFQKFSEQFASRSFYEII---KKMSFSNKSNIFH--------NYRAETQFYFLI 278
P +++ + + +I + +S S + H N R F+ +
Sbjct: 218 APD-----ERWDVSLSPQLLSTVIMPPESLSISGLWSYAHYLADQGLSNGRYWLAFWTKV 272
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFML-YTIITIMKSFGKSGILL-- 335
+ P + VA+ L+A S RS + + +F+G ++ +T I G S +L
Sbjct: 273 LQPAVTVALVLMAISFIFGPLRS----VTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGF 328
Query: 336 -PVAAALIPVILTISLSILILLQK 358
P+ A LIP + + L LL++
Sbjct: 329 PPLLAVLIPAA-ACAFAGLYLLRR 351
>gi|302342716|ref|YP_003807245.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
gi|301639329|gb|ADK84651.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
Length = 397
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 79/380 (20%), Positives = 149/380 (39%), Gaps = 55/380 (14%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT---- 57
P I+ RY + + F + + F++ + +I EL + +SRG L
Sbjct: 4 PRIIHRYLLREMIGP---FFISLGVFTFMLLIAKIM----ELTDLVVSRGVGLDVVGRLL 56
Query: 58 --RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
+P IP TL+ ++ F ++ E+V +A G+S + L P V L I
Sbjct: 57 LYTLPYFFVFTIPMATLLGVLLAFLRMSGDMEVVALKAAGVSPYAFLPPVAV----LAIC 112
Query: 116 TVLVINPIATSG--------EKIGIDLIQQWKDNGDKQK--SDIIPWMQI---SNPQQ-- 160
LV + +A G E + + + D K++ D P M I P Q
Sbjct: 113 AWLVTSALAFWGLPWGNHRFENLVFQVAKAQTDLALKERVFMDTFPGMVIYISRLPGQGQ 172
Query: 161 --DIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADL------AIIYNDKVKLKKVV 212
D+FI ++ +H + K+ KI + L I++ L+
Sbjct: 173 MTDLFIVDEREKGRHHT-------IVAKRGKIFPANNDRLILRLYDGTIHSVGQNLRSAQ 225
Query: 213 EYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET 272
+ I +++TL+ Q+ ++ F E++ +M ++ H Y E
Sbjct: 226 TAAFVTYDIAVDASTLSA-----AHQRTTKHEKEMYFGELLAEMDKLPADSMQH-YLIEM 279
Query: 273 QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG 332
+ + +P + M LI + + + +A +F G+ Y +++ SFGK+G
Sbjct: 280 EMHKKFSVPFACLVMALIGLPLGMHSRGGRSWGVAIALVVFLGY--YLMLSAAWSFGKTG 337
Query: 333 ILLPVAAALIPVILTISLSI 352
P+ P +L +L++
Sbjct: 338 DYPPIVGMWAPNLLLGALAV 357
>gi|254460553|ref|ZP_05073969.1| permease YjgP/YjgQ family protein [Rhodobacterales bacterium
HTCC2083]
gi|206677142|gb|EDZ41629.1| permease YjgP/YjgQ family protein [Rhodobacteraceae bacterium
HTCC2083]
Length = 381
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
A +P +I+ ++P ++ V L SELV+ +A G S W+L P V+ ++G F
Sbjct: 58 ALSLPNVIRMVLPMSAFAASVYVTNRLASESELVVMQATGYSPWRLARPVVMFGFIVGTF 117
Query: 116 -TVLVINPIATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPE 172
VL + +S E++ ++++N S ++ + NP + + ++I PE
Sbjct: 118 MMVLTQYLVPSSLEQL------RFRENEITGSLSSQLLREGEFMNPTKGVTFYIREITPE 171
Query: 173 NHIWEDFTSITIDKKNK 189
+ + F S D++N+
Sbjct: 172 GVLKDVFLS---DRRNE 185
>gi|261364966|ref|ZP_05977849.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
gi|288566764|gb|EFC88324.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
Length = 356
Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 35/212 (16%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAA---TRVPLII 63
RY + +Y LL + L EI N++G+L S + GA +A ++P
Sbjct: 6 RYIIRQMAVMAVYALLAFLALY---SFFEIINEVGDLGKGSYN-GATMAQYVLMQMPARA 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P L+ +V L SEL + +A G+S +LL ++L F ++
Sbjct: 62 YELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLL-------LVLSQFGLIFALAT 114
Query: 124 ATSGEKIGIDLIQQWKD------NGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN---- 173
A GE I L Q+ ++ NG + W++ +++ I +++LP++
Sbjct: 115 AALGEWIAPVLSQKAENIKSTAINGKISTGNTGLWLK----EKNSIINVREMLPDHTLLG 170
Query: 174 -HIWEDFTSITIDKKNKIIHRKDADLAIIYND 204
IWE + KN++ +A+ A++ ND
Sbjct: 171 IKIWER------NDKNELTQATEAESAVLNND 196
>gi|301170458|emb|CBW30065.1| conserved inner membrane protein [Haemophilus influenzae 10810]
Length = 358
Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 149/362 (41%), Gaps = 18/362 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY K L L+ + L +I E +G+ Y I + + +P I+
Sbjct: 7 RYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIPKDIETF 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 66 FPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEWGIPQ 125
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E+ D+ + G W + + F+ +++ + + +D T D+
Sbjct: 126 TEQFARDMRAKALSGGSILSIKNGVWAKDGHH----FVFVRRVTDDTKL-DDIYIYTFDQ 180
Query: 187 KNKIIHRKDADLAIIYNDKVK--LKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQKFS 241
++ +I K A+ A D+ K L++V + I + S T + D S
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKEEIITTNHLSETWETSLTPDKLGAVS 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S S + +SF ++ R E F+ I P+ + M L+A S RS
Sbjct: 241 LRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRS 299
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA---ALIPVILTISLSILILLQK 358
+ GI GF+ Y + I+ G++ ++ + A ALIP +L I + +L +K
Sbjct: 300 VTAGARIVTGICVGFLFYVVNEIL---GQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRK 356
Query: 359 ED 360
D
Sbjct: 357 RD 358
>gi|86605800|ref|YP_474563.1| YjgP/YjgQ family protein [Synechococcus sp. JA-3-3Ab]
gi|86554342|gb|ABC99300.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
JA-3-3Ab]
Length = 376
Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 68/357 (19%), Positives = 146/357 (40%), Gaps = 30/357 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATRVPL 61
+L RY F L L + G +L+ L + ++ G +P ++ R +L +P
Sbjct: 10 LLERYLFGQMLTPVLAGIAGGTLLLLAGRLFTLAERLVEGSVPPLTVLRLLIL---DLPE 66
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P ++ L+ SE+ RA GI ++ P ++ +L+ + + N
Sbjct: 67 MVLLGMPIAAFFATMLTLGKLSGNSEITAMRAAGIPFTRIFRPLLLVGLLMSLSAFWISN 126
Query: 122 PIATSGEKIGIDLIQQW---KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ + ++ + QQ + Q ++ + +++ +++ P + +D
Sbjct: 127 VLLPASKREIRQIDQQALLARATTPVQYDVFFRTARVGGTEDNLWFFIRQVDPRLNTMQD 186
Query: 179 FTSITIDK----KNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNSTT 227
T + +D K ++ A A+ L + V ++YG P D+
Sbjct: 187 VTILQVDPLPGGKYQLAEVTLAAQAVWNGLDWTLSEGVTHRYGPDGLSLAEEPFDRKP-- 244
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
L + + + S E+ +++S +SN+ + T+F+ +PL
Sbjct: 245 LEVSQDLAALMQPPVPPNELSLPELAERISRLARSNL-NTQPLRTEFHMRFSLPLA---- 299
Query: 288 TLIAASVSLEFSRSNQPRII----VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ A +SL + R+ V +GI F Y ++++ +S G++G L P AAA
Sbjct: 300 SFFAVLISLPLGSTTARRVGRYGGVVFGILLVFAYYVVLSVSRSLGEAGALPPWAAA 356
>gi|330938933|gb|EGH42432.1| permease YjgP/YjgQ [Pseudomonas syringae pv. pisi str. 1704B]
Length = 302
Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 25/232 (10%)
Query: 11 KYYLKTTLYFLLGAM-ILVFVIDLNEIQNQMGELPN-YSISRGAVLAATRVPLIIQQIIP 68
+Y K+ L +L + I++ ++ + ++M ++ + Y+++ P + +P
Sbjct: 6 RYIGKSVLLAILAVLGIILGLVSMFAFIDEMRDISDTYTLTDALSFVMLTAPRRVYDTLP 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISI----WQLLNPFVVGSILLGIFTVLV---IN 121
L+ ++ L +SEL I RA G+SI W ++ P +LL I VLV +
Sbjct: 66 MAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPM----LLLMIAGVLVGEYVA 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
P A + + L Q +GD Q + W + Q D FI + P N + T
Sbjct: 122 PYAENQAQAARSLAQ---GSGDAQSARHGLWHR----QGDEFIHINTVQP-NGLMLGVTR 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
D + ++ A A D +LK V + D ++ +N P++
Sbjct: 174 YHFDDQRHMLTSSFAKEANFKTDYWELKDVTTTHFN----DGSTEVVNTPVE 221
>gi|253997572|ref|YP_003049636.1| permease [Methylotenera mobilis JLW8]
gi|253984251|gb|ACT49109.1| permease YjgP/YjgQ family protein [Methylotenera mobilis JLW8]
Length = 356
Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 79/363 (21%), Positives = 147/363 (40%), Gaps = 44/363 (12%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY FK L L + + DL + +G +Y +S+ + A P +
Sbjct: 3 IITRYLFKEITVNVLLITLALIAMFSFFDLIQELESLGH-GSYGLSKILLFVALSAPGHV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P LV + L R SEL++ R GIS++ L + +L + T L+ I
Sbjct: 62 YEVMPVAVLVGCMYSLGQLARYSELIVLRVSGISLYSLAATLIKIGMLFTVITFLIGELI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN-----HIWED 178
EK+ + + D+ Q W++ + F+ +++L + HI+E
Sbjct: 122 TPLSEKMAQRIRIKATDSVIVQDFKSGLWVKDGHS----FVNVEEVLADTTLLNIHIYE- 176
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST-----------T 227
D K + A + +++ LK V + +DK+S +
Sbjct: 177 -----FDDKFNLRTVSHAHKGLYEDEQWHLKSVSQTH-----LDKDSNHVEHLDKATWRS 226
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
L P ++ E+ ++ + Y I ++ +NK R + + +V PL + M
Sbjct: 227 LIRPELLNVLLVLPEKMSAWNLYAYIDHLA-ANKQK---TTRYKMALWAKLVYPLASLVM 282
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII-TIMKSFGKSGIL---LPVAAALIP 343
++A L F+ Q + IF G ML + T+ ++F G+L P +A+ P
Sbjct: 283 VILA----LPFAFIQQRATGASTKIFIGIMLGILYQTLNQTFVHLGLLNDWAPAFSAITP 338
Query: 344 VIL 346
L
Sbjct: 339 TAL 341
>gi|228471152|ref|ZP_04055971.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
gi|228307092|gb|EEK16166.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
Length = 361
Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 76/359 (21%), Positives = 152/359 (42%), Gaps = 25/359 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL---AATRVPLII 63
RY F +L T YF +IL I ++ ++ L + A++ A VP
Sbjct: 11 RYIFIQFLAT--YFFSIVLILAVAIAF-DVTEKLDRLLQPDVPLRAIIWDYYANFVPYYA 67
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P + I V L SE++ + G+S +LL P+++G+ ++ I T L+ + +
Sbjct: 68 NLFSPLFVFIAVIYVTSRLAENSEIIAILSCGMSFRRLLKPYMLGAAVIAILTFLLSSFV 127
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G ++ ID ++ + ++ I MQ++ P+ +F+ E+ + F+
Sbjct: 128 IPPGNRVRIDFQNRYIKDKRITYANAIQ-MQVA-PETFMFMSYYN--DESKVGYTFSMDR 183
Query: 184 IDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGR---IPIDKNSTTLNIPIKMDGF- 237
+ K+ + R A+ +IIY+ +L+ +G N IPI F
Sbjct: 184 FEGKD-LKSRVMAN-SIIYDTLYNWQLQDYTITYFGERQDTLFRGNQLDTIIPITPRDFL 241
Query: 238 --QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ E + Y I++ + + + + +IP + +TL+ S+S
Sbjct: 242 VTEGDVEMLTTPELYHSIQQQRMRGAATQLYAIELHKR---IAMIPASFI-LTLMGVSLS 297
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + +A G+ F+ +T+ SF +G + PV AA +P ++ + +S ++
Sbjct: 298 AR-KRKGGMGLALAVGLSLSFIYILFMTVTASFAVTGAMAPVVAAWLPNLVYLGISFVL 355
>gi|325578599|ref|ZP_08148699.1| YjgP/YjgQ family membrane protein [Haemophilus parainfluenzae ATCC
33392]
gi|301156461|emb|CBW15932.1| conserved inner membrane protein [Haemophilus parainfluenzae T3T1]
gi|325159835|gb|EGC71965.1| YjgP/YjgQ family membrane protein [Haemophilus parainfluenzae ATCC
33392]
Length = 359
Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 74/356 (20%), Positives = 145/356 (40%), Gaps = 29/356 (8%)
Query: 17 TLYFLLG-AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVN 75
TL+ L+G + I+ FV + +Y I + +P ++ P L+
Sbjct: 21 TLFTLVGLSAIIKFVEQFRSVGK-----GSYDIWQAVAYTGLTIPKDVETFFPMAALLGA 75
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
++ NL SELV+ ++ G S +++ + ++ L +FT+++ E+ D+
Sbjct: 76 LIALGNLASRSELVVMQSAGFSRFKIGLAVMKTALPLVLFTMIIGEWGIPQTEQFARDMR 135
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKD 195
+ G W + N F+ ++I + + ED T D++ + H K
Sbjct: 136 TRALSGGSMLSVKNGVWAKDGNN----FVYVRRITDDAQL-EDIYIYTFDEQRNLTHLKH 190
Query: 196 ADLA--IIYNDKVKLKKVVEYQYGRIPI------DKNSTTLNIPIKMDGFQKFSEQFASR 247
A+ A N++ +L++V + I ++ T P K+ +
Sbjct: 191 ANQAQYSAENNQWQLRQVNNSAVSKEQITTTNRLTEDWATSLTPDKLGAVSLRPTSLSIS 250
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
YE I + + + + R E ++ I PL + M ++A S RS
Sbjct: 251 GLYEYIAFLKQTGQ----DSRRFELTYWRKIFQPLSVGVMMMLALSFIFGSLRSVTAGAR 306
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAA---ALIPVILTISLSILILLQKED 360
+ GI GF+ Y + I FG+ ++ A AL+P +L +++ +L +K D
Sbjct: 307 IVTGICFGFLFYVVNEI---FGQMSVVFNAPAFLGALMPSLLFMAIIWWLLARKRD 359
>gi|255320990|ref|ZP_05362163.1| permease YjgP/YjgQ family protein [Acinetobacter radioresistens
SK82]
gi|262379920|ref|ZP_06073075.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|255301954|gb|EET81198.1| permease YjgP/YjgQ family protein [Acinetobacter radioresistens
SK82]
gi|262298114|gb|EEY86028.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
Length = 356
Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN----YSISRGAVLAATRVPLIIQQI 66
K+ KTT +LGA +++ ++ + + +GEL N Y+ + + P I +I
Sbjct: 9 KHVTKTTALAMLGATVVLSILQV--LFTYLGELGNLKEGYNAWQALLYVLWSAPRYIYEI 66
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
+P L+ ++ L SEL+I RA GIS+W+++ + ++LL I +
Sbjct: 67 LPISALIGAVLGLGTLASNSELIIMRAAGISLWRIVGWVMRSALLLVILS 116
>gi|253997950|ref|YP_003050013.1| permease [Methylovorus sp. SIP3-4]
gi|253984629|gb|ACT49486.1| permease YjgP/YjgQ family protein [Methylovorus sp. SIP3-4]
Length = 356
Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 79/377 (20%), Positives = 152/377 (40%), Gaps = 46/377 (12%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + + + + ++ + + DL + +G+ Y +++ + P +
Sbjct: 3 LLNRYLTQEIVSSIMLIMVALLAMFSFFDLIQELESIGK-GTYGLNKVLMFVLLSAPGHV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P LV + L+R SEL+I R GISI + + ++ + T V +
Sbjct: 62 YEVVPVAVLVGTMYALGQLSRHSELIILRVSGISIATIARSLLKVGLIFAVITFFVGEFV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN-----HIWE- 177
EK L Q D+ Q W++ F+ ++++P++ HI+E
Sbjct: 122 TPYSEKTAQRLRIQATDSVVAQDFRSGLWVKDGRS----FVNVEEVMPDSELMNIHIYEF 177
Query: 178 ----------DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-GRIPIDKNST 226
D + D +N H KD + VK + + Q+ I + +
Sbjct: 178 DDTFHLRTISDAKTGRFDGEN--WHLKDVQQTHFLDKTVKSEFFPQAQWQSLIRPELLNV 235
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
L +P KM + + Y I +S +NK R E + +V PL +
Sbjct: 236 LLVVPEKMSAW----------NLYFYIHHLS-ANKQK---TSRHEIALWSKMVYPLASLV 281
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM-KSFGKSGIL---LPVAAALI 342
M ++A L F Q + IF+G ML + ++ + F G+L P+ +A++
Sbjct: 282 MVVLA----LPFGFLQQRSGGASAKIFAGIMLGIVYQVLNRVFVHLGLLNDWSPLMSAVV 337
Query: 343 PVILTISLSILILLQKE 359
P +L + + +L E
Sbjct: 338 PTLLFLLAGLTMLFMAE 354
>gi|121611823|ref|YP_999630.1| permease [Verminephrobacter eiseniae EF01-2]
gi|121556463|gb|ABM60612.1| permease YjgP/YjgQ family protein [Verminephrobacter eiseniae
EF01-2]
Length = 369
Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 58/341 (17%), Positives = 126/341 (36%), Gaps = 44/341 (12%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
Y +S + A +P + +++P L+ I V L ++SE I R G+ W+ L
Sbjct: 46 GYHLSHALLFVALGIPSHLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGMGPWRALRT 105
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN----------GDKQKSDIIPWMQ 154
+ LG F VL+ + D + W D G W++
Sbjct: 106 LLT----LGGFFVLLTFAVG--------DYLAPWTDRTAQRIKAHALGGLTSGATGAWLK 153
Query: 155 ISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKV-KLKKVVE 213
+ + + + P + D D + +++ + A + D +L +V
Sbjct: 154 ERQDRHSFAVNVRALTPNGGM-RDVRIFEFDDQGRLVTQTRATVGRFATDGAWELAQVRR 212
Query: 214 YQYGRIPIDKNST-------TLNIPIKMDGFQKFS-----EQFASRSFYEIIKKMSFSNK 261
++ R ++ L P ++ + ++ A+ ++ I+ ++ + +
Sbjct: 213 SRFARGDGQDDARVEHLDAPALRWPTRISADMVAASLLKPDRMATLDLFQFIRHLNANGQ 272
Query: 262 SNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTI 321
S R +F+ + PL + M ++A + RS V G+ +G + +
Sbjct: 273 S----TQRYAIEFWRKLFYPLSCLVMVVLALPFAYLHLRSGGTAGYVFGGVMAGISFFLL 328
Query: 322 ITIMKSFGK----SGILLPVAAALIPVILTISLSILILLQK 358
+ G S L A LI +L+++ ++L++
Sbjct: 329 NNVFGYAGNLQNWSPWLTAAAPGLIYSLLSLAAFGWLVLRR 369
>gi|121997476|ref|YP_001002263.1| permease [Halorhodospira halophila SL1]
gi|121588881|gb|ABM61461.1| permease YjgP/YjgQ family protein [Halorhodospira halophila SL1]
Length = 350
Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 55/303 (18%), Positives = 124/303 (40%), Gaps = 22/303 (7%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
P + + PF TL+ ++ L EL RA G+S+ Q+ +VG ++L +
Sbjct: 54 APALAYEAFPFATLIGALMGLGGLAARQELTAMRAAGVSVVQIAGAVLVGGVILALLATA 113
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
V + E+ + + + + D W + F+ A++ +H+
Sbjct: 114 VGELVVPPAERQAAAVRGLSEADELRTGPDGALWARDGRD----FLRAERPRSASHL--- 166
Query: 179 FTSITIDK--KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIK 233
S+T+ + + ++ R DAD A + + +L+ VV+ Y +++ + +
Sbjct: 167 -ESVTLYRFVEGQLTERIDADGAHYEDGQWRLEGVVKTVYADHRLERRELEAWAWQGALS 225
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN-YRAETQFYFLIVIPLMLVAMTLIAA 292
D ++ E+ + + + + + YR + + PL +AM L+
Sbjct: 226 PDVLAVVVADPSTLPVPELWTYIQYLDANELDSGPYR--LALWEKVATPLATLAMLLVTI 283
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL---PVAAALIPVILTIS 349
+ RS+ + G+ G + + ++ G++G++ P +AL+PV+ +
Sbjct: 284 PLVFTAVRSSGAGQRIVIGVLVGVAFF---LLNRALGQAGVVYGVPPSLSALLPVVAFAA 340
Query: 350 LSI 352
L +
Sbjct: 341 LGL 343
>gi|212212730|ref|YP_002303666.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuG_Q212]
gi|212011140|gb|ACJ18521.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuG_Q212]
Length = 355
Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 145/363 (39%), Gaps = 60/363 (16%)
Query: 21 LLG-AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVF 79
LLG M + F+ L++I + +Y + + + T++P + Q+ P + ++
Sbjct: 23 LLGIEMFMEFIGQLSQIGS-----VHYGLGQAFLYVLTQLPSDLYQLFPMAGFLGCLIGL 77
Query: 80 FNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI---FTVLVINP-IATSGEKIGIDLI 135
L +SEL++ R G+SI + V ++L+ + F VI P + SGE+ + +
Sbjct: 78 GRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVVMTFIGEVIAPQLEASGEETKLTAL 137
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI----- 190
K G K D+ W+ Q I IG ++D KNKI
Sbjct: 138 S--KAVGYKALGDV--WLH--GAQSFIHIG-----------------SVDAKNKISEVSQ 174
Query: 191 --IHRKDADLAIIYNDKVKLKKV--VEYQYGRIPIDKNSTT--------LNIPIKMDGFQ 238
I+ K L+ +Y K + K + Y + N TT L I D Q
Sbjct: 175 FFINNKHQLLSAVYAPKGEYVKGHWILYNVKQTQFTPNRTTEKKIAKFPLTIVFNPDHLQ 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + +S + + + ++ + R F+ + PL V M I V F
Sbjct: 235 QGRKMVDRQSIVGLYHTIRYRQQAGL-QTSRYVFAFWQRFIQPLTTVVM--ICLGVPFIF 291
Query: 299 SRSNQP----RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
Q RI+ GI GF Y + F + P+ AAL+P +L ++ +I
Sbjct: 292 GSLRQASMGWRILT--GIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVL-FAVGCVI 348
Query: 355 LLQ 357
LL+
Sbjct: 349 LLR 351
>gi|330811513|ref|YP_004355975.1| permease [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
gi|327379621|gb|AEA70971.1| Putative permease [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 353
Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 73/354 (20%), Positives = 142/354 (40%), Gaps = 48/354 (13%)
Query: 24 AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLN 83
A + F+ +++++ + Y+++ A P + ++P L+ ++ +L
Sbjct: 27 ATLFAFIDEMSDVSD------TYTLTDVASYVLLTAPRRLYDMLPMAALIGCLIGLGSLA 80
Query: 84 RTSELVISRAIGISI----WQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWK 139
SEL I RA G+SI W ++ P +V +L+G+ I P + + L Q
Sbjct: 81 SNSELTIMRAAGVSIGRIVWAVMKPMLV-LMLVGVLIGEYIAPATENTAQANRSLAQ--- 136
Query: 140 DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLA 199
GD Q + W + Q D FI + P N I T D + ++ A A
Sbjct: 137 GGGDAQSAKHGLWHR----QGDEFIHINSVQP-NGILYGVTRYRFDDQRHMLSSSFAKRA 191
Query: 200 IIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEII---KKM 256
D +L V + DK + + P +++ + + ++ + +
Sbjct: 192 NFAEDHWQLSDVTTTLFH----DKRTEVVAAPQ-----ERWDVSISPQLLSTVVMAPESL 242
Query: 257 SFSNKSNIFH--------NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
S + H N R F+ ++ PL+ A+ L+A S RS + +
Sbjct: 243 SITGLWGYIHYLADQGLNNGRYWLAFWVKVLQPLVTAALVLMAISFIFGPLRS----VTL 298
Query: 309 AYGIFSGFML-YTIITIMKSFGKSGILL---PVAAALIPVILTISLSILILLQK 358
+F+G ++ +T G S ++ P+ A L+P + +L+ L LL++
Sbjct: 299 GQRVFTGVLVGFTFRIAQDLLGPSSLVFGFSPLFAVLVPAGIC-ALAGLWLLRR 351
>gi|145631589|ref|ZP_01787355.1| predicted permease [Haemophilus influenzae R3021]
gi|144982789|gb|EDJ90315.1| predicted permease [Haemophilus influenzae R3021]
Length = 358
Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 79/362 (21%), Positives = 149/362 (41%), Gaps = 18/362 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY K L L+ + L +I E +G+ Y I + + +P I+
Sbjct: 7 RYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTMPKDIETF 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P L+ ++ NL SELV+ ++ G S +++ + ++ L +FT+++
Sbjct: 66 FPMAALLGALIALGNLASRSELVVMQSAGFSRFKIGMAVMKTALPLVVFTMIIGEWGIPQ 125
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E+ D+ + G W + + F+ +++ + + +D T D+
Sbjct: 126 TEQFARDMRAKALSGGSILSIKNGVWAKDGHH----FVFVRRVTDDTKL-DDIYIYTFDQ 180
Query: 187 KNKIIHRKDADLAIIYNDKVK--LKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQKFS 241
++ +I K A+ A D+ K L++V + I + S T + D S
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAVS 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S S + +SF ++ R E F+ I P+ + M L+A S RS
Sbjct: 241 LRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRS 299
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA---ALIPVILTISLSILILLQK 358
+ GI GF+ Y + I+ G++ ++ + A ALIP +L I + +L +K
Sbjct: 300 VTAGARIVTGICVGFLFYVVNEIL---GQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRK 356
Query: 359 ED 360
D
Sbjct: 357 RD 358
>gi|260582801|ref|ZP_05850587.1| permease [Haemophilus influenzae NT127]
gi|260094127|gb|EEW78029.1| permease [Haemophilus influenzae NT127]
Length = 358
Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 149/362 (41%), Gaps = 18/362 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY K L L+ + L +I E +G+ Y I + + +P I+
Sbjct: 7 RYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIPKDIETF 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 66 FPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEWGIPQ 125
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E+ D+ + G W + + F+ +++ + + +D T D+
Sbjct: 126 TEQFARDMRAKALSGGSILSIKNGVWAKDGHH----FVFVRRVTDDTKL-DDIYIYTFDQ 180
Query: 187 KNKIIHRKDADLAIIYNDKVK--LKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQKFS 241
++ +I K A+ A D+ K L++V + I + S T + D S
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLRQVNHSTIMKDEIITTNHLSETWETSLTPDKLGAVS 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S S + +SF ++ R E F+ I P+ + M L+A S RS
Sbjct: 241 LRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRS 299
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA---ALIPVILTISLSILILLQK 358
+ GI GF+ Y + I+ G++ ++ + A ALIP +L I + +L +K
Sbjct: 300 VTAGARIVTGICVGFLFYVVNEIL---GQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRK 356
Query: 359 ED 360
D
Sbjct: 357 RD 358
>gi|309972901|gb|ADO96102.1| Lipopolysaccharide export permease, LptG [Haemophilus influenzae
R2846]
Length = 358
Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 150/362 (41%), Gaps = 18/362 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY K L L+ + L +I E +G+ Y I + + +P I+
Sbjct: 7 RYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTMPKDIETF 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 66 FPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEWGIPQ 125
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E+ D+ + +G W + + F+ +++ + + +D T D+
Sbjct: 126 TEQFARDMRAKALSSGSILSIKNGVWAKDGHH----FVFVRRVTDDTKL-DDIYIYTFDQ 180
Query: 187 KNKIIHRKDADLAIIYNDKVK--LKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQKFS 241
++ +I K A+ A D+ K L++V + I + S T + D S
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAVS 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S S + +SF ++ R E F+ I P+ + M L+A S RS
Sbjct: 241 LRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRS 299
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA---ALIPVILTISLSILILLQK 358
+ GI GF+ Y + I+ G++ ++ + A ALIP +L I + +L +K
Sbjct: 300 VTAGARIVTGICVGFLFYVVNEIL---GQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRK 356
Query: 359 ED 360
D
Sbjct: 357 RD 358
>gi|257487385|ref|ZP_05641426.1| hypothetical protein PsyrptA_29198 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 205
Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 21/210 (10%)
Query: 11 KYYLKTTLYFLLGAM-ILVFVIDLNEIQNQMGELPN-YSISRGAVLAATRVPLIIQQIIP 68
+Y K+ L +L + I++ ++ L ++MG++ + Y+++ P + +P
Sbjct: 6 RYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISDTYTLADALSYVMLTAPRRVYDTLP 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISI----WQLLNP---FVVGSILLGIFTVLVIN 121
L+ ++ L +SEL I RA G+SI W ++ P +V +L+G + +
Sbjct: 66 MAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVGEY----VA 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
P A + + L Q +GD Q + W + Q D FI + P N + T
Sbjct: 122 PYAENQAQAARSLAQ---GSGDAQSARHGLW----HRQGDEFIHINTVQP-NGLMLGVTR 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKV 211
D + ++ A A D +LK V
Sbjct: 174 YRFDDQRHMLTSSFAKEANFKTDYWELKDV 203
>gi|327398670|ref|YP_004339539.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
gi|327181299|gb|AEA33480.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
Length = 348
Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 79/367 (21%), Positives = 169/367 (46%), Gaps = 53/367 (14%)
Query: 12 YYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA--ATRVPLIIQQIIPF 69
++LKT + L +L+FV L++ + + ++ +S +++ P II +PF
Sbjct: 11 FFLKT-FFISLAFFVLLFV--LSDFFSNLSDIVGNGVSIKYIISYYVYYTPFIIYFSLPF 67
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV----LVINPIAT 125
I + ++V L+ +E+++ R+ G+SI+++ P + SI++ + L++N
Sbjct: 68 IFALSSLVSLGYLSSKNEIIVMRSSGLSIFKIAKPVLFFSIIVAVLMFASKELIVN---- 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
G++ K K K + W ++ N +FI + N++ + T+ +D
Sbjct: 124 ----YGLEKASFVKHYYFKNKQFKLGWTKVGN----MFIKVNGLNVTNNMAYNVTAYRVD 175
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG--FQKFSEQ 243
K +R + AII +VK K + I + + N+P G F+ F +
Sbjct: 176 KD---FNRVE---AIITAKRVKFKP-------KEIIFIDGCSFNMPNFSQGRCFKDFKIK 222
Query: 244 FASRSFYEIIKKMSF---SNKSNIF-HNYRAETQFYFLIVI-----PLMLVAMTLIAASV 294
++SFY + F S KS +F + + + +Y ++I P + +TLI+
Sbjct: 223 -TNKSFYSLFSSSKFKEPSIKSLVFSYKHSLDKDYYLSLIIHRFVYPFSCIILTLISFVF 281
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTI----ITIMKSFGKSGILLPVAAALIPVILTISL 350
L ++N R +FS +++ + + ++ S G+ ++ P + +I ++ +S+
Sbjct: 282 VL---KTNPRRGGFVKNVFSSSLVFLVYIGSLELISSMGRYSMVDPNISIVIFILFWLSV 338
Query: 351 SILILLQ 357
S+ LL+
Sbjct: 339 SVYNLLK 345
>gi|148827126|ref|YP_001291879.1| permease [Haemophilus influenzae PittGG]
gi|148718368|gb|ABQ99495.1| predicted permease [Haemophilus influenzae PittGG]
Length = 358
Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 149/362 (41%), Gaps = 18/362 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY K L L+ + L +I E +G+ Y I + + +P I+
Sbjct: 7 RYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTMPKDIETF 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 66 FPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEWGIPQ 125
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E+ D+ + G W + + F+ +++ + + +D T D+
Sbjct: 126 TEQFARDMRAKALSGGSILSIKNGVWAKDGHH----FVFVRRVTDDTKL-DDIYIYTFDQ 180
Query: 187 KNKIIHRKDADLAIIYNDKVK--LKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQKFS 241
++ +I K A+ A D+ K L++V + I + S T + D S
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAVS 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S S + +SF ++ R E F+ I P+ + M L+A S RS
Sbjct: 241 LRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRS 299
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA---ALIPVILTISLSILILLQK 358
+ GI GF+ Y + I+ G++ ++ + A ALIP +L I + +L +K
Sbjct: 300 VTAGARIVTGICVGFLFYVVNEIL---GQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRK 356
Query: 359 ED 360
D
Sbjct: 357 RD 358
>gi|326388615|ref|ZP_08210208.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
gi|326206866|gb|EGD57690.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
Length = 356
Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 65/325 (20%), Positives = 129/325 (39%), Gaps = 44/325 (13%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
R P ++ + +P+ L+ I+ LN+ SE++ +A G+S Q+L P + S +FT
Sbjct: 54 RTPQLVSRFLPYSVLLATIITLMTLNQNSEVIAMKAAGLSAHQVLAPLFLVSAAASVFTF 113
Query: 118 -----LVINPIATSGEKIGIDLIQQWKD---NGDKQKSDIIPWMQISNPQQDIFIGAKKI 169
+V+ AT ++ W+D SD+ + + + +F K
Sbjct: 114 TFNERVVVRSTAT---------LKAWQDVDYGAVPTDSDVKSNVWLQDGPNIVF---AKT 161
Query: 170 LPENHIWEDFTSITIDKKN------KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
+ + ++ +++ +I+H A LA + + + +
Sbjct: 162 ISGRGTATRMSEVSWYRRDPTGVVTEIVH---APLATYTHPGWRFDHPTSFDVQSAAL-- 216
Query: 224 NSTTLNIP-IKMDGFQK----FSEQFASRSFYEIIKKMSFSNKSNIFHNYRA---ETQFY 275
TTL P + G + + A R E I ++S S YR + +++
Sbjct: 217 --TTLPGPKVYASGVEPTQIIIRKTDADR---ESITQLSQSIAEIQAAGYRTNELDGKWW 271
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
I PL V M L+ + + +RS + + G+ GF + + + G G
Sbjct: 272 HKISGPLSAVLMPLLGSVAAFGLARSGKLFVRAVIGMALGFAYFVVDNAALAMGNFGGYS 331
Query: 336 PVAAALIPVILTISLSILILLQKED 360
P AA P +L + + +L++ E+
Sbjct: 332 PFLAAWSPFLLFLLIGETVLIRTEE 356
>gi|254498610|ref|ZP_05111329.1| permease [Legionella drancourtii LLAP12]
gi|254352150|gb|EET10966.1| permease [Legionella drancourtii LLAP12]
Length = 354
Score = 42.7 bits (99), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 27/179 (15%)
Query: 21 LLGAMILVFVIDLNEIQNQMGELP--NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVV 78
L+G IL ++ D Q+G+L +Y I++ A ++P + P +L+ ++
Sbjct: 23 LVGLQILFYLFD------QLGDLGKLDYGITQAAFFVLMQMPYQVYLFFPMASLLGCLIG 76
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
+ SELV+ RA G+SI Q+ + S+LL IF V V+ GE + L
Sbjct: 77 LGAMANHSELVVMRASGMSILQITGAVLKASVLL-IFLVTVL------GETVVPYLSHYA 129
Query: 139 KD-------NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
D G ++ W++ N FI +ILP N++ ++ D+++ +
Sbjct: 130 NDYKTASVSGGQTIRTAKGFWLRHGND----FISVGRILP-NNVLQNIYQFRFDEQHHL 183
>gi|206889444|ref|YP_002249741.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206741382|gb|ACI20439.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 369
Score = 42.7 bits (99), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 111/251 (44%), Gaps = 35/251 (13%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNE-IQNQMGELPN--YSISRGAVLAATRVP 60
I+ + + K +++T L L L+ ++ L E I + M P+ + I G +P
Sbjct: 5 IVCKSYIKDFVRTFLVLLFSMSCLLSIVGLIEKIDDFMPYKPSTTFFIEYGLY----SIP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL-- 118
I +IPF+TLV ++ +F R+ E +I G + LL PF++ I++ I +
Sbjct: 61 RYIFYLIPFVTLVTSLFIFSIGVRSREFLILSVSGGRLRGLLKPFLILGIVISIVGFIFG 120
Query: 119 -VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK-----KI--L 170
+ P T I+ + Q K KS I Q+++F+ AK KI
Sbjct: 121 EFLQPEFTKKLNFMIEELTQ------KGKSSI---------QKELFVRAKDGTVIKIGKF 165
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY--GRIP-IDKNSTT 227
+ D I I K + +I R D+ A I D+ KLK + Y + G++ D
Sbjct: 166 SQQQKKADEVKIFIIKNDALIKRIDSQEAEIEQDQWKLKNSIVYDFVAGKVEKYDLMDYP 225
Query: 228 LNIPIKMDGFQ 238
LN+ I + F+
Sbjct: 226 LNLKISIAAFK 236
>gi|237799874|ref|ZP_04588335.1| hypothetical protein POR16_13650 [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022729|gb|EGI02786.1| hypothetical protein POR16_13650 [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 353
Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 24/214 (11%)
Query: 26 ILVFVIDLNEIQNQMGELPN-YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
I++ ++ L ++MG++ + Y+++ P + +P L+ ++ +L
Sbjct: 22 IILGLVSLFAFIDEMGDINDTYTLADALSYVFMTAPRRVYDTLPMAALIGCLIGLGSLAS 81
Query: 85 TSELVISRAIGISI----WQLLNP---FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ 137
+SEL I RA G+SI W ++ P +V +L+G + + P A + + L Q
Sbjct: 82 SSELTIMRAAGVSIGRIVWAVMKPMLFLMVAGVLVGEY----VAPYAENQAQAARSLAQ- 136
Query: 138 WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDAD 197
+GD Q + W + Q D FI + P N + T D + ++ A
Sbjct: 137 --GSGDAQSARHGLWHR----QGDEFIHINTVQP-NGLMLGVTRYRFDDQRHMLTSSFAK 189
Query: 198 LAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
A D +LK V + + ++ +N P
Sbjct: 190 EAHFKTDYWELKDVSTTHFN----EGSTQVINTP 219
>gi|90021021|ref|YP_526848.1| SecD export membrane protein [Saccharophagus degradans 2-40]
gi|89950621|gb|ABD80636.1| permease YjgP/YjgQ [Saccharophagus degradans 2-40]
Length = 352
Score = 42.4 bits (98), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 70/350 (20%), Positives = 147/350 (42%), Gaps = 35/350 (10%)
Query: 24 AMILVFVIDLNEIQNQMGELPN----YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVF 79
A +L+ ++ L+ I + + +L N Y+ S + +P +P LV ++
Sbjct: 17 ATVLLVILSLDAISDLVDQLSNLSGDYTFSEAIIFVLLYIPSSAYDYLPLSALVGCLIGL 76
Query: 80 FNLNRTSELVISRAIGIS----IWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
L +SELV+ RA G+S +W ++ P V +G+ VLV +A ++
Sbjct: 77 GVLASSSELVVMRAAGVSVLQLVWAVMRPVCV---FIGV-GVLVGEYVAPYSDQYADSRR 132
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKD 195
K + +++ W N + + ++ +LP ++ T D+K +++
Sbjct: 133 ALAKGHDRALQAERGVW----NREGNEYMHFNAVLPNGKLY-GITRYIFDEKGQLLEASF 187
Query: 196 ADLAIIYNDKVKLKK---VVEYQYGRIP----IDKNSTTLNIPIKMDGFQKFSEQFASRS 248
D A IY + ++ V ++ GRI + T P ++ +++ +
Sbjct: 188 VDSA-IYQGEFWFEQDGEVTSFEDGRIEKFGFATREWRTEVSPDLLNVLVLDADELPMKR 246
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
Y+ ++ +K + + + F+ PL + ++ +IA S L R V
Sbjct: 247 LYDY---STYLDKQGL-DSSEYKLAFWHKAFQPLAVASLVMIAISFILGPLRQTTMGFRV 302
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILL---PVAAALIPVILTISLSILIL 355
G+ G + T K G + I++ P+ A LIP+++ + L + ++
Sbjct: 303 FIGVIVGLVFQ---TSQKMLGPASIIMGFSPMFAVLIPIVVCLVLGVFLI 349
>gi|145629200|ref|ZP_01784999.1| hypothetical protein CGSHi22121_10370 [Haemophilus influenzae
22.1-21]
gi|145639140|ref|ZP_01794747.1| hypothetical protein CGSHiII_03859 [Haemophilus influenzae PittII]
gi|144978703|gb|EDJ88426.1| hypothetical protein CGSHi22121_10370 [Haemophilus influenzae
22.1-21]
gi|145271702|gb|EDK11612.1| hypothetical protein CGSHiII_03859 [Haemophilus influenzae PittII]
gi|309750721|gb|ADO80705.1| Lipopolysaccharide export permease, LptG [Haemophilus influenzae
R2866]
Length = 358
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 152/366 (41%), Gaps = 26/366 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY K L L+ + L +I E +G+ Y I + + +P I+
Sbjct: 7 RYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIPKDIETF 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 66 FPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMII------- 118
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISN----PQQDIFIGAKKILPENHIWEDFTSI 182
GE GI +Q+ + + + I N F+ +++ + + +D
Sbjct: 119 GE-WGIPQTEQFARDTRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKL-DDIYIY 176
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVK--LKKVVEYQYGR---IPIDKNSTTLNIPIKMDGF 237
T D+++ +I K A+ A D+ K L++V + I + S T + D
Sbjct: 177 TFDQQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKL 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + S S + +SF ++ R E F+ I P+ + M L+A S
Sbjct: 237 GAVSLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFG 295
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA---ALIPVILTISLSILI 354
RS + GI GF+ Y + I+ G++ ++ + A ALIP +L I + +
Sbjct: 296 SLRSVTAGARIVTGICVGFLFYVVNEIL---GQTSVVYGIPAIFGALIPSLLFIVMIWWL 352
Query: 355 LLQKED 360
L +K D
Sbjct: 353 LSRKRD 358
>gi|221133511|ref|ZP_03559816.1| predicted permease [Glaciecola sp. HTCC2999]
Length = 354
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 72/364 (19%), Positives = 147/364 (40%), Gaps = 41/364 (11%)
Query: 14 LKTTLYFLLGAMI-LVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITL 72
L +T++ L ++ L +I E ++GE +Y + + +P I+Q P TL
Sbjct: 13 LLSTIFVTLSTLVGLSALIKFVEQLRKVGE-GDYDLIVAGLFVFFSLPRDIEQFFPMATL 71
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
+ ++ L SEL++ +A G+S W ++ + ++++ +LV + E
Sbjct: 72 LGGLIGMGVLASNSELIVMQASGMSKWNIIQSAMKCAVVMVCIILLVGEFLTPVSEAKAK 131
Query: 133 DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE----------DFTSI 182
+ + G S+ I W + + F+ + + ++ + D T I
Sbjct: 132 QIRTEALSGGQVFTSNKIVWTKDGSD----FVSIGNVFNQENLGDVTIYKFNDDLDLTQI 187
Query: 183 TIDKKNKIIHR----KDADLAIIYNDKVKLKKV--VEYQYGRIPIDKNSTTLNIPIKMDG 236
K+ + +D + I + ++ ++ E++ P DK S P
Sbjct: 188 IAAKRATFVEESWALQDVHITYINDQRISTNRISLTEWRAALTP-DKLSVATVKP----- 241
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E + + YE + + ++N + R E + I+ P+ + M L+A S
Sbjct: 242 -----EALSIQGLYEYVGYL----QNNQQDSTRYELAMWRKILQPVSVCVMLLMAFSFVF 292
Query: 297 EFSRSNQ--PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS RIIV G +GF + + F L P+ A++P L +++L+
Sbjct: 293 GSLRSTTMGSRIIV--GTLTGFSFFIANEVFGPFAMVYNLPPMLGAIVPSALFAGVAVLL 350
Query: 355 LLQK 358
L ++
Sbjct: 351 LRRQ 354
>gi|225075101|ref|ZP_03718300.1| hypothetical protein NEIFLAOT_00100 [Neisseria flavescens
NRL30031/H210]
gi|224953585|gb|EEG34794.1| hypothetical protein NEIFLAOT_00100 [Neisseria flavescens
NRL30031/H210]
Length = 356
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 77/378 (20%), Positives = 156/378 (41%), Gaps = 54/378 (14%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP--NYSISRGAVLAATRVPLIIQ 64
RY + +Y LL + L EI N++G+L +Y+ + A ++P
Sbjct: 6 RYIIRQMAVMAVYALLAFLALY---SFFEIINEVGDLGKGSYNGTTMAQYVLMQMPARAY 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ +V L SEL + +A G+S ++L ++L F ++ A
Sbjct: 63 ELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKIL-------LILSQFGLIFAIATA 115
Query: 125 TSGEKIGIDLIQQWKD------NGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN----- 173
T GE I L Q+ ++ NG + W++ +++ I +++LP++
Sbjct: 116 TLGEWIAPVLSQKAENIKAAAINGKISTGNTGLWLK----EKNSIINVREMLPDHTLLGI 171
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKV-KLKKVVEYQYGRIPID-KNSTTLNIP 231
IW + KN++ +A+ A++ ND +LK + ++ + N P
Sbjct: 172 KIWAR------NDKNELTQATEAESAVLNNDGSWQLKNIRRSTLSEDKVEVSTAAEENWP 225
Query: 232 IK-----MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL-----IVIP 281
I MD +Q + I + +N++ TQ Y + +V P
Sbjct: 226 IAVKRNLMDVLLVKPDQMSVGELTTYISHLENNNQN---------TQIYAIAWWRKLVYP 276
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ M L+A + + + +R + + GI G + + + + +LP A
Sbjct: 277 VAAWVMALVAFAFTPQTTRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVLPFLAGA 336
Query: 342 IPVILTISLSILILLQKE 359
+P +L L++ ++ +E
Sbjct: 337 LPTVLFALLAVYLIRCQE 354
>gi|99080790|ref|YP_612944.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
gi|99037070|gb|ABF63682.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
Length = 379
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRG-AVLA-----ATRVP 60
RY YL L+F A+ILV V +N + L ++ I G +VLA A +P
Sbjct: 6 RYVLSQYL---LFFGFFALILVAVFWINRAVS----LFDWLIGDGQSVLAFLEISALSLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSIL 111
+++ ++P + V LN SEL + RA G S WQL P +V +L
Sbjct: 59 NLVRMVLPLAAFAATVWVTNRLNSESELTVLRATGSSPWQLARPAMVFGLL 109
>gi|109899861|ref|YP_663116.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
gi|109702142|gb|ABG42062.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
Length = 353
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 75/356 (21%), Positives = 145/356 (40%), Gaps = 19/356 (5%)
Query: 8 YFFKYYLKTTLYFLLGAMI-LVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
++ L +T LG ++ L +I E +G +Y ++ AV +P ++Q
Sbjct: 7 WYIARTLLSTTAMSLGVLVGLSALIKFIEQMKSVGR-GSYDMTVAAVYVFLSLPRELEQF 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P TL+ ++ L SELV+ ++ G S W ++ + +IL+ +F +++ +A
Sbjct: 66 FPMATLIGGLIGMGILASNSELVVMQSAGQSRWNIIISAMKSAILMVLFVMVIGEWVAPV 125
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E ++ Q G SD + W + D F+ +++ ++ + D + D
Sbjct: 126 SETKAKEIRTQAISGGSLFSSDRLVWAK----DGDNFVSIGEVVDKDTL-RDVSIYEFDN 180
Query: 187 KNKIIHRKDADLAIIYNDKV-KLKKV--VEYQYGRIPI----DKNSTTLNIPIKMDGFQK 239
+ + A+ A Y DK +L V E+ RI + D + P K+
Sbjct: 181 ELYLRQITTAESA-TYQDKTWELSHVQSTEFSDNRIQVQDAADGAWASSLTPDKLGVVTV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
E + R + + + N S YR + ++ P+ + M L+A S
Sbjct: 240 KPEALSIRGLIDYVNYL--ENNSQNSERYR--LALWRKVLQPISVGVMLLMALSFIFGPL 295
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS V G+ +GF + + S + P A++P ++ +SI +L
Sbjct: 296 RSVTMGARVIMGVLTGFGFFVSNEVFGSLSTVYHIPPFIGAILPSVVFTGISIHLL 351
>gi|189500954|ref|YP_001960424.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
gi|189496395|gb|ACE04943.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
Length = 360
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 62/307 (20%), Positives = 128/307 (41%), Gaps = 20/307 (6%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P I P +L+ ++ + L+ +SEL + G + QLL PF+ ++L+ F +L
Sbjct: 57 IPETILLTSPISSLLASLYITGRLSGSSELTAMKTAGAGMHQLLKPFLAVALLVSFFNIL 116
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGA---KKILPENHI 175
+ + Q+ D + S + + + + IG+ + N
Sbjct: 117 NAGWLYPKAAALKNRFETQYFDKTFENISSSNNLHILESRNRILSIGSLDQQNNTGLNIS 176
Query: 176 WEDFTSITIDKK---NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
E F I + KI + + D I++ + ++ Y ++ + TL + +
Sbjct: 177 LETFEGPEIASRIDAKKISYDETLDRWILHETRTRVFSQNGMSY---TLNPGNDTLTLSL 233
Query: 233 KMDGFQKFS---EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ S ++ Y I + + SN+ R +F+ + +PL V + L
Sbjct: 234 SATSLRDLSIQPDEMDIMQHYRYIDEKREAGFSNL---DRVIVKFHNKLALPLASVIVIL 290
Query: 290 IAASVSLEFSRSNQPRIIVAYGI--FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
+S +R + + + +GI F+GF+ + + + G G+L PV AA +P +L
Sbjct: 291 TGVPLS---ARKKRSGLAIEFGISLFTGFIYLGLQRTLSTAGYRGLLDPVLAAWLPDLLF 347
Query: 348 ISLSILI 354
+++ I I
Sbjct: 348 LAVGIAI 354
>gi|327398771|ref|YP_004339640.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
gi|327181400|gb|AEA33581.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
Length = 348
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 123/295 (41%), Gaps = 62/295 (21%)
Query: 59 VPLIIQQIIPF-ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP---FVVGSILLGI 114
V ++ I+P +T+ +N V+ +L+ SE+ R+ GIS++++ P F V +
Sbjct: 58 VVFLLAFIVPMALTIAIN-YVYSDLSNNSEITAIRSCGISLFRVYFPAFLFSVAVFVFLF 116
Query: 115 FTVLVINPIATSGEKIGI------DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK 168
+++ + P A ++ I + K N K D + W++ +P +
Sbjct: 117 YSIAFVAPKARLSYRVEIAKTFRNKVYAALKPNMFYDKVDGVMWIKNLSPDK-------- 168
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDAD--------LAIIYNDKVKLKKVVEYQYGRIP 220
H+ + F + +K KI K D LA +N K+ ++YG
Sbjct: 169 ----KHLKDVFFA----QKGKIFLAKKGDFKDIPSGILAEFFNVKMYSPSKSGFEYG--- 217
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQF-ASRSFYEIIKK----MSFSNKSNIFHNYRAETQFY 275
F ++ F R +++ K MSF N + +++ Y
Sbjct: 218 ---------------SFDRYELAFLTGRGYFKPNKNNTRFMSFGEVVNYYSKSKSKDALY 262
Query: 276 F---LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
++ + + + A++LIA S + FSRS + IVA +F FM Y I+ + +S
Sbjct: 263 RINKIVSMSMSVFALSLIAFSFGITFSRSGKSAGIVA-SLFLFFMFYIILMLSES 316
>gi|121594279|ref|YP_986175.1| permease [Acidovorax sp. JS42]
gi|120606359|gb|ABM42099.1| permease YjgP/YjgQ family protein [Acidovorax sp. JS42]
Length = 369
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 60/331 (18%), Positives = 131/331 (39%), Gaps = 24/331 (7%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
Y +S + A +P ++ +++P L+ I V L ++SE I R G+ W+ L+
Sbjct: 46 GYQLSHALLFVALSLPQLLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALST 105
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
++ + TV+V + IA + EK L++ + G W++ I +
Sbjct: 106 LLMLGCAFVMVTVIVGDYIAPASEK-AASLVKA-RRLGQISTGATGAWLKERQGDHSIAV 163
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQY-----G 217
+ + P N D + ++ A+ A D L++V + G
Sbjct: 164 NVRAVDP-NGAMRGVRVFEFDARGRVAATIQAEQATFDDARDAWNLQQVQRTLFEAEADG 222
Query: 218 RIPIDK-NSTTLNIPIKMDGFQKFS-----EQFASRSFYEIIKKMSFSNKSNIFHNYRAE 271
+ + + TL P ++ + ++ A+ + ++ + + +S R E
Sbjct: 223 GMRVSRLQEPTLRWPTRISPDMVAASLLKPDKMATIELFRFVRHLEANGQS----AQRYE 278
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK- 330
+F+ + PL + M +++ + RS V G+ +G + + + G
Sbjct: 279 IEFWRKVFYPLSCLVMVVLSLPFAYLHFRSGGIAGYVFGGVMAGISFFLLNNVFGFAGNL 338
Query: 331 ---SGILLPVAAALIPVILTISLSILILLQK 358
S L A LI +L+++ ++L++
Sbjct: 339 QNWSPWLTAAAPGLIYSVLSLAAFGWLVLRR 369
>gi|322834555|ref|YP_004214582.1| permease YjgP/YjgQ family protein [Rahnella sp. Y9602]
gi|321169756|gb|ADW75455.1| permease YjgP/YjgQ family protein [Rahnella sp. Y9602]
Length = 356
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 80/369 (21%), Positives = 149/369 (40%), Gaps = 23/369 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + T + L + L +I + ++G+ YS + + VP
Sbjct: 1 MFGVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GGYSAAGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + + FI +++ E ++ T
Sbjct: 120 EWVAPQGEQMARNYRAQQMYGGSLLSTQNGVWAKDGHD----FIYIERVAGE----KELT 171
Query: 181 SITI---DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-GRIPIDKNSTTLNI------ 230
+ I +++NK+ + A A N + KL +V E ++ I + T +
Sbjct: 172 GVNIYHFNEENKLQSVRYASSATFDNGEWKLSQVDESDLTDQLQITGSQTLTGVWKTNLT 231
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P K+ + + + +K + S + R + + I PL + M L+
Sbjct: 232 PDKLGVVALDPDALSISGLHNYVKYLKQSGQ----EAKRYQLNMWSKIFSPLSVAVMMLM 287
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A S RS + V GI GF+ Y + I + P+ AL+P L +
Sbjct: 288 ALSFIFGPLRSVPMGVRVVTGICFGFLFYVLDQIFGPLSLVYSIPPILGALLPSGLFFVI 347
Query: 351 SILILLQKE 359
S+ +LL+K
Sbjct: 348 SMFLLLKKR 356
>gi|88800548|ref|ZP_01116110.1| predicted Permease [Reinekea sp. MED297]
gi|88776693|gb|EAR07906.1| predicted Permease [Reinekea sp. MED297]
Length = 350
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGA--VLAATRVPLI 62
L+RY + +K F+ ++L+ ++ EI + + ++ S A V+ +VP++
Sbjct: 3 LYRYLYGQIMKP---FVFMTLVLLILLIATEISDTLTKILTGQFSDNALWVVIGFQVPIL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+Q+I+P + + L++ SE I AIGIS LL +V + L + VL +N
Sbjct: 60 LQEILPAAFFLACLTTLHRLSQDSERAILHAIGISDGDLLRFLLVFAALPAMLLVLALNH 119
Query: 123 IATSGEKIGIDL 134
T + ++L
Sbjct: 120 YITPKAQENLEL 131
>gi|331007486|ref|ZP_08330657.1| putative permease [gamma proteobacterium IMCC1989]
gi|330418710|gb|EGG93205.1| putative permease [gamma proteobacterium IMCC1989]
Length = 362
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 70/346 (20%), Positives = 145/346 (41%), Gaps = 39/346 (11%)
Query: 33 LNEIQNQMGEL-PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVIS 91
L ++ +++G L P Y+ + + +P Q +PF LV +V +L TSELV+
Sbjct: 29 LAKLIDELGNLTPAYTFAEALIYVVLAIPSSFYQYMPFAGLVGGLVGLGSLASTSELVVM 88
Query: 92 RAIGISI----WQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
RA G+S+ W +L P + + +F VI P++ + + Q + K
Sbjct: 89 RAAGVSLLRLTWAVLKPVLWFIAAMLVFAEYVI-PVSDQYAESRRSALLQGGNTALSAKG 147
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+ W N + +F+ + + T D K ++ A+ A+ D +
Sbjct: 148 GV--W----NREGTLFMHFNSVQANGKLL-GVTRYQYDDKQRLTLASFAETALYTADGWR 200
Query: 208 LKKVVEYQY--GRIPIDKNS--TTLNIPIK----------MDGFQKFSEQFASRSFYEII 253
+ VVE ++ + DK + TT P + + + ++ A Y+
Sbjct: 201 EENVVETRFLDAQSSSDKEALITTATYPSRPWQTELSPNLLTILVQDTDNLAITKLYDYA 260
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+ + N N + ++ ++ PL+++++ L+A S F + + Y IF
Sbjct: 261 QYLEKQN----LDNGKYLLAYWGKVLQPLVIISLVLVAIS----FIFGPLREVTMGYRIF 312
Query: 314 SGFMLYTIITI-MKSFGKSGILL---PVAAALIPVILTISLSILIL 355
+G ++ + + K G + +L P+ A L+P++ + + +L
Sbjct: 313 TGVVVGIVFQLTQKLLGPASLLYGISPLFAVLLPILFCFGVGLFLL 358
>gi|260221416|emb|CBA29957.1| hypothetical protein Csp_A14750 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 384
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 75/186 (40%), Gaps = 5/186 (2%)
Query: 22 LGAMILVFVIDLNEIQNQMGELPN--YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVF 79
LG M L F D+ E + + + Y + + + A +P + ++ P L+ I V
Sbjct: 37 LGFMALFFFFDVVEELQSVSRIASSGYQVPQALIYVALMIPAHVYELFPITVLIGTIFVM 96
Query: 80 FNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWK 139
L R+SE I R G+ W+ L + + +FT V + +A +K L +++
Sbjct: 97 ARLARSSEFTILRTSGLGPWRALRTLLALGLGFVLFTFAVGDYVAPLADKTAQLLKSRFQ 156
Query: 140 DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLA 199
K+ + + + +GA L + +D D + K++ +A
Sbjct: 157 GKISVGKTGAWLKERQAYGSYSVNVGA---LSSDATLKDVRVYEFDNQGKVVSLTEAKAG 213
Query: 200 IIYNDK 205
+D+
Sbjct: 214 TFGDDE 219
>gi|126658379|ref|ZP_01729528.1| hypothetical protein CY0110_27505 [Cyanothece sp. CCY0110]
gi|126620311|gb|EAZ91031.1| hypothetical protein CY0110_27505 [Cyanothece sp. CCY0110]
Length = 394
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 61/326 (18%), Positives = 140/326 (42%), Gaps = 38/326 (11%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P + P L+ ++ + L+ SE++ R++G+S+++L+ P ++ +++
Sbjct: 76 KMPGFVSLAFPMAMLLAALMAYSRLSSDSEIIALRSLGVSVYRLIIPVILFGLVVTGCAF 135
Query: 118 LV---INPIATSGEKIGIDLIQQWKDNGDKQKSDIIP---WMQISNPQQDIFIGAKKILP 171
+V I P AT + + + K+++ + P +Q + QQ + +
Sbjct: 136 IVNDWIAPAATHEAALTLQRAVNQERPDFKERNIVYPEYKTIQEEDGQQATVL-TRLFYA 194
Query: 172 ENHIWEDFTSITI-----DKKNKIIHRKDADLAI------IYNDKVKL-------KKVVE 213
E + + +TI + N+I+ + A I +N + L + +V
Sbjct: 195 EEYNGDKMKGLTILDRTQEGVNQIVTSESATWNISSNTWDFFNGTIYLIAPDGSYRNIVR 254
Query: 214 YQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ 273
+Q+ ++ + + L + Q F+E +++ E +K M S + Q
Sbjct: 255 FQHQQLALPRAPLDL-----ANRRQNFTEMTIAQT-KEYLKAMQLSGDEKRVRKVKVRLQ 308
Query: 274 FYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG--FMLYTIITIMKSFGKS 331
+ +P + + ++ A++ + +N+ ++G+ G F Y + + S G
Sbjct: 309 EKY--AMPFVCLIFGVVGAAIGVRPQNTNKA---TSFGVCVGLIFGYYLLAFMSTSLGIW 363
Query: 332 GILLPVAAALIPVILTISLSILILLQ 357
GIL P A +P IL ++ L+L+Q
Sbjct: 364 GILTPFLGAWLPNILGLTAGSLLLIQ 389
>gi|87302818|ref|ZP_01085629.1| possible permease [Synechococcus sp. WH 5701]
gi|87282701|gb|EAQ74659.1| possible permease [Synechococcus sp. WH 5701]
Length = 401
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 63/313 (20%), Positives = 126/313 (40%), Gaps = 36/313 (11%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
R+P + P TL+ ++ + L+ SEL+ R++G+S W+++ P ++ ++L+ + T
Sbjct: 83 RMPGFLVLSFPMATLMATLLAYSTLSSNSELIALRSVGVSTWRMVLPALIVAVLMSLLTF 142
Query: 118 LVINPIATSGEKIGIDLIQQ--WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+ + I S + + Q K ++ S+II P + G+++ L +
Sbjct: 143 VFNDLIVPSANLEATNTLNQALGKAIAAEKGSNIIYSRFSRRPSKLDESGSERYLSQLFY 202
Query: 176 WEDFTSITIDKKNKIIHRKDADLAII------YNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
F +++ + + + I+ +ND+ + E++ G+I + +S T
Sbjct: 203 SRQFKDGEMEEVTVLDFSRPSGTQILKAKTGTWNDEAGM---WEFRDGQIVLVGDSETTT 259
Query: 230 I-------------PIKMDGFQKFSEQFASRSFYEIIK-----KMSFSNKSNIFHNYRAE 271
P+K+ K AS S E ++ + + K R +
Sbjct: 260 SAKFDRYLYPLDQGPLKLAALPK---DAASMSVSEALRAETLLREAGDQKEARRLRVRIQ 316
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS 331
+F F P + + LI +S+ + + + F Y + I S G
Sbjct: 317 EKFAF----PAICLVFGLIGSSLGVRPNARTSRSQGFGISVLLIFSYYLMSFIFSSLGVK 372
Query: 332 GILLPVAAALIPV 344
G L PV AA PV
Sbjct: 373 GTLGPVLAAWSPV 385
>gi|16273590|ref|NP_439845.1| hypothetical protein HI1703 [Haemophilus influenzae Rd KW20]
gi|260581044|ref|ZP_05848866.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|1176473|sp|P45332|LPTG_HAEIN RecName: Full=Lipopolysaccharide export system permease protein
lptG
gi|1574557|gb|AAC23349.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|260092284|gb|EEW76225.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
Length = 358
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 152/366 (41%), Gaps = 26/366 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY K L L+ + L +I E +G+ Y I + + +P I+
Sbjct: 7 RYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIPKDIETF 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 66 FPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMII------- 118
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISN----PQQDIFIGAKKILPENHIWEDFTSI 182
GE GI +Q+ + + + I N F+ +++ + + +D
Sbjct: 119 GE-WGIPQTEQFARDTRAKALSGGSILSIKNGVWAKDGHHFVFVRRVTDDTKL-DDIYIY 176
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVK--LKKVVEYQYGR---IPIDKNSTTLNIPIKMDGF 237
T D+++ +I K A+ A D+ K L++V + I + S T + D
Sbjct: 177 TFDQQHNLIKLKHANQASYSEDEAKWTLRQVNHSTIMKDEIITTNHLSETWETSLTPDKL 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + S S + +SF ++ R E F+ I P+ + M L+A S
Sbjct: 237 GAVSLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFG 295
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA---ALIPVILTISLSILI 354
RS + GI GF+ Y + I+ G++ ++ + A ALIP +L I + +
Sbjct: 296 SLRSVTAGARIVTGICVGFLFYVVNEIL---GQTSVVYGIPAIFGALIPSLLFIVMIWWL 352
Query: 355 LLQKED 360
L +K D
Sbjct: 353 LSRKRD 358
>gi|119899192|ref|YP_934405.1| integral membrane protein [Azoarcus sp. BH72]
gi|119671605|emb|CAL95518.1| probable integral membrane protein [Azoarcus sp. BH72]
Length = 358
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGELPNYSISRGAVLAATRV 59
M IL RY K T L+ + L D +NE+ + +G+ Y + + + A V
Sbjct: 1 MSKILSRYLAKEIFGATATVLVAFLGLFAFFDFINEL-DSVGK-DGYQLYQAVIYVAMIV 58
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF-VVGSILLGIFTVL 118
P + +++P L+ ++ L R SE+ + RA G+S W++L ++GS+ + + T +
Sbjct: 59 PGRVYELLPIAVLIGSLYALTTLARHSEITVMRASGLSTWRMLRILGLIGSVFV-VLTFV 117
Query: 119 VINPIATSGEKIGIDLIQQWK 139
IA E QQW+
Sbjct: 118 FGEYIAPPAESAA----QQWR 134
>gi|170718033|ref|YP_001785073.1| permease YjgP/YjgQ family protein [Haemophilus somnus 2336]
gi|168826162|gb|ACA31533.1| permease YjgP/YjgQ family protein [Haemophilus somnus 2336]
Length = 356
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 88/370 (23%), Positives = 148/370 (40%), Gaps = 24/370 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L T L LL + L +I E +G+ Y + + + +P
Sbjct: 1 MMNTLDRYIGKNILGTILATLLMLVGLSAIIKFVEQFRSIGK-GTYDVIQATLFTLLTMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ +++ NL SEL++ ++ G S +++ + ++ L + T+++
Sbjct: 60 KDIETFFPMAALLGSLIALGNLASRSELIVIQSAGFSRFRIGLAVMKTALPLMLITMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E D+ + G W + N FI +I + + D
Sbjct: 120 EWGIPQTEHFARDMRAKAISGGSMLSVKNSIWAKDGND----FIYVGRITNDISL-NDIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-------DKNSTTLNIPIK 233
+ D K ++ A+ A + K KL + + Q I D STTL P K
Sbjct: 175 IYSFDDKRQLKQVTHANQASFEHGKWKLSGINQSQIFADEIKTINRLKDNWSTTLT-PDK 233
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + Y IK M + + R E F+ + P+ + M L+A S
Sbjct: 234 LGIASLRPTSLSMTGLYNYIKFMKETGQDA----KRFELTFWQKVFQPVSVAVMMLLALS 289
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL--LP-VAAALIPVILTISL 350
RS + GIF GF+ Y I I+ G+ +L +P V AALIP +L + L
Sbjct: 290 FIFGSLRSVTAGARIVTGIFFGFLFYVINEIL---GRLSLLYDIPIVLAALIPSLLFMIL 346
Query: 351 SILILLQKED 360
+L +K +
Sbjct: 347 IWWLLNRKRE 356
>gi|290473525|ref|YP_003466395.1| putative transmembrane protein, transport [Xenorhabdus bovienii
SS-2004]
gi|289172828|emb|CBJ79599.1| putative transmembrane protein, transport [Xenorhabdus bovienii
SS-2004]
Length = 358
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 131/330 (39%), Gaps = 19/330 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L+T L L + L +I + ++G+ YS + VP
Sbjct: 1 MFGVLDRYIGRTILQTILMTLFTLVSLSGIIKFVDQLRKVGQ-GEYSAFAAGIYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IQ P L+ ++ L SELV+ +A G + Q+ + +I L T+++
Sbjct: 60 KDIQIFFPMAALLGGLLGLGALATRSELVVMQASGFTRLQVAGSVMKTAIPLVFLTMVIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE+I + Q G + W + N F+ K + +N + D +
Sbjct: 120 EWVAPQGEQIARNYRSQKMFGGSLMSTAKGMWAKDGND----FVYIKSVDKDNAL-RDVS 174
Query: 181 SITIDKKNKIIHRKDADLAII--YNDKVKLKKVVE---YQYGRIP----IDKNSTTLNIP 231
D K++ K A A+ N + KL +V E Q GRI I +L P
Sbjct: 175 IYHFDDNKKLLSVKYAATAVYDQNNRQWKLSQVEESDLRQIGRITGSQRISAEWKSLLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + + R + I + K R + + + PL + M L+A
Sbjct: 235 EKLGVVALDPDALSIRGLQQYITYL----KQGQQDAGRYQLNMWKKVFAPLSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTI 321
S RS + V GI +GF+ Y +
Sbjct: 291 LSFIFGPLRSVAMGVRVIAGISTGFIFYVL 320
>gi|91788271|ref|YP_549223.1| permease YjgP/YjgQ [Polaromonas sp. JS666]
gi|91697496|gb|ABE44325.1| permease YjgP/YjgQ [Polaromonas sp. JS666]
Length = 381
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 58/327 (17%), Positives = 121/327 (37%), Gaps = 27/327 (8%)
Query: 46 YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF 105
Y I + A +P + +++P L+ I V L ++SE I R G+ W+ L
Sbjct: 52 YQIRHALLYVALLIPNHLYELLPISVLIGTIFVMARLAQSSEYTILRTSGLGPWRALRLL 111
Query: 106 VVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
+V + V + +A + E+ L +++ ++ W++ P +
Sbjct: 112 LVLGAAFVTLSFAVGDYVAPTSERAAQLLKARYQSKITVGQTG--AWLKEKQPYNSYVVN 169
Query: 166 AKKILPENHIWEDFTSITIDKKNKIIHRKDADLA-IIYNDKVKLKKV--VEYQYGRIPID 222
K++ P N + + D K I+ A +A D LK+ E+ P D
Sbjct: 170 VKELTPNNEM-KGVQIFEFDNKGLIVSTTQAPVAQFTGGDAWMLKQASRAEFDVPASPAD 228
Query: 223 KNSTTLNIPIKMDGFQKFS-----------------EQFASRSFYEIIKKMSFSNKSNIF 265
+ + Q F E+ ++ + ++ ++ + ++
Sbjct: 229 ISKPQNGARVSRTTLQTFRWPTEISAEMVSVALLKPERMSTLDLFNYVRHLNANGQT--- 285
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM 325
R E +F+ + PL + M ++A + RS V G+ G + + +
Sbjct: 286 -AQRYEIEFWKKVFYPLSCLVMVMLALPFAYLHFRSGGIASYVFAGVMIGISFFLLNNVF 344
Query: 326 KSFGKSGILLPVAAALIPVILTISLSI 352
G P AA P ++ +++S+
Sbjct: 345 GYIGNLRNWQPWLAAATPGLMYMAVSL 371
>gi|71277954|ref|YP_267493.1| putative permease [Colwellia psychrerythraea 34H]
gi|71143694|gb|AAZ24167.1| putative permease [Colwellia psychrerythraea 34H]
Length = 355
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 63/337 (18%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
NY ++ A+ VP ++ P L+ ++ L SEL++ +A G+S ++
Sbjct: 43 NYDLAHAALYVLYAVPRDVEVFFPMSALIGGLIGIGMLASNSELIVMQAAGLSRLDIIKS 102
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ--------------WKDNGDK--QKSD 148
+ ++LL I ++ + +A SGE ++ Q W +GD +
Sbjct: 103 VMKTAVLLIIVSMAIGEWLAPSGEAKAREIRAQAISGGSLIAAKNGVWAKDGDYFVNIGE 162
Query: 149 IIPWMQISNPQ---------QDIFIGAKKILPENHIW-----EDFTSITIDKKNKIIHRK 194
++ Q+ Q D ++ AK + ++ W E+F S+T +N+II +
Sbjct: 163 VLDRGQLKKVQIYGFNDELKIDSWLSAKSAIYQDKSWLLTDVEEF-SLT---ENEIITKS 218
Query: 195 DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIK 254
+ I+N + KK+ G + + S +L I + + +EQ SR
Sbjct: 219 HSQK--IWNSSLTPKKL-----GVVTVTPESLSLRGLIDYLDYLEANEQDPSR------Y 265
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
K++F K I+ PL + M L+A S RS + G+F+
Sbjct: 266 KLAFWRK----------------IMQPLTVAVMLLVALSFIFGPLRSVSMGARIMMGVFT 309
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
G + + ++ S L P+ A+IP + + ++
Sbjct: 310 GILFFISNEVLGSLSLVYQLPPILGAMIPSLFFVGIA 346
>gi|330994315|ref|ZP_08318243.1| Lipopolysaccharide export system permease protein lptG
[Gluconacetobacter sp. SXCC-1]
gi|329758782|gb|EGG75298.1| Lipopolysaccharide export system permease protein lptG
[Gluconacetobacter sp. SXCC-1]
Length = 369
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 72/356 (20%), Positives = 149/356 (41%), Gaps = 35/356 (9%)
Query: 24 AMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNIVVFFN 81
A+I+V ++++ + Q+ E+ + + VL A R+PL+ +P L+ ++
Sbjct: 29 AVIVVSLMEILSLLEQVTEIMHRHLGLTGVLYYAVMRLPLLFCNAMPIAVLIGALLALVQ 88
Query: 82 LNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN 141
+ ++E+ I RA G+S L+ F+ +I LGI LV + + E+ L Q W
Sbjct: 89 MTTSNEIAIMRAAGLSTPGLIKLFLPTTIALGILCGLVNDQVTPRTEQ---ALAQWWNVT 145
Query: 142 GDKQKSDIIP-WMQISNPQQDI-FIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLA 199
++ W++ N I F+G+ + D T D+++ + D A
Sbjct: 146 TPGAIAEAHNYWVRSGNDLISIHFLGSGA-----SVLGDVTVYHRDRQSLLQKVTTLDTA 200
Query: 200 II-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIP----IKMDGFQKFSEQFASR--- 247
Y ++ V+ RI + L++P I++D + + ++
Sbjct: 201 RYVHGHWYGTPTRMLSVISPT--RIDL------LDVPPGQSIRLDWPDTLTPGYITQLTI 252
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAE---TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
SF + I M + + T+ I++PL M L+A V R+
Sbjct: 253 SFTQSISTMLDEEAGRLPSSQSPSFFLTEILGRIMLPLTFTVMLLLAVPVVYIPPRAGIR 312
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ + + +G + ++++ G +G L + A + +++ I I +LL+ E+
Sbjct: 313 SWLPVWCLGAGLLFVVFQGLLRALGNAGTLPSLMAIFVGILIFILGVITVLLRIEE 368
>gi|149914658|ref|ZP_01903188.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Roseobacter sp.
AzwK-3b]
gi|149811451|gb|EDM71286.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Roseobacter sp.
AzwK-3b]
Length = 380
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 33/228 (14%)
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
A +P +I I+P + V L+ SEL + +A G S W+L+ P +V IL+ +
Sbjct: 47 ALTLPGVIGVILPMAAFAATVYVTNRLSTESELTVVQATGYSPWRLMRPVIVFGILIALM 106
Query: 116 TVLVIN---PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE 172
L+ + P + S ++ D + Q + ++ + +P I + I P+
Sbjct: 107 MSLLTHFLIPSSLSQLRLRQDEVSQ------NITAKLLTEGEFLHPAPGITFYIRDITPD 160
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
+ F S D +N + + + A + D K++ +D + T +
Sbjct: 161 GELHNVFMSDRRDSENTMTYTSNR--AYLIQDPEGGTKLLM-------VDGLAQT----V 207
Query: 233 KMDGFQKFSEQFASRSFYEI----------IKKMSFSNKSNIFHNYRA 270
+ DG + F+ F S Y+I + K++F++ +I + RA
Sbjct: 208 RRDGNRLFTTHFNDFS-YDISALIASEATSLDKVTFAHTLDIARDPRA 254
>gi|319776037|ref|YP_004138525.1| inner membrane protein [Haemophilus influenzae F3047]
gi|329123195|ref|ZP_08251764.1| YjgP/YjgQ family membrane protein [Haemophilus aegyptius ATCC
11116]
gi|317450628|emb|CBY86848.1| conserved inner membrane protein [Haemophilus influenzae F3047]
gi|327471540|gb|EGF16984.1| YjgP/YjgQ family membrane protein [Haemophilus aegyptius ATCC
11116]
Length = 358
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 79/362 (21%), Positives = 149/362 (41%), Gaps = 18/362 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY K L L+ + L +I E +G+ Y I + + +P I+
Sbjct: 7 RYIGKSILGAIFSTLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIPKDIETF 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 66 FPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEWGIPQ 125
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E+ D+ + G W + + F+ +++ + + +D T ++
Sbjct: 126 TEQFARDMRAKALSGGSILSIKNGVWAKDGHH----FVFVRRVTDDTKL-DDIYIYTFEQ 180
Query: 187 KNKIIHRKDADLAIIYNDKVK--LKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQKFS 241
++ +I K A+ A D+ K L++V + I + S T + D S
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPDKLGAVS 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S S + +SF ++ R E F+ I P+ + M L+A S RS
Sbjct: 241 LRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFIFGSLRS 299
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA---ALIPVILTISLSILILLQK 358
+ GI GF+ Y + I+ G++ ++ + A ALIP +L I + +L +K
Sbjct: 300 VTAGARIVTGICVGFLFYVVNEIL---GQTSVVYGIPAIFGALIPSLLFIVMIWWLLSRK 356
Query: 359 ED 360
D
Sbjct: 357 RD 358
>gi|288940379|ref|YP_003442619.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
gi|288895751|gb|ADC61587.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
Length = 354
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 65/322 (20%), Positives = 133/322 (41%), Gaps = 25/322 (7%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
Y ++ + +P + Q+ P TL+ ++ L SELV RA GIS+ +L+
Sbjct: 43 RYGLAEAMLFTLLSLPRYLYQLFPIATLIGALIGLGTLASRSELVAMRAAGISVGRLVRA 102
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
++G ++L V++ +A E+ ++L ++ +G+ + + I + ++
Sbjct: 103 ALLGGLVLATIAVVLGELVAPIAEQRAVEL-RRLALSGEAAQLTPYGFWAIDDGA---YV 158
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVV-------EYQYG 217
++I + D +D + A+ A + + L+ + Q
Sbjct: 159 NIREIRSGTSL-RDIDIYRVDAAAGTLEASHAEGARYEDGRWVLEGIALSRVDGEGVQVE 217
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
R+ + + L+ P + Y+ I+ MS + + + E F+
Sbjct: 218 RVEHAEWDSMLD-PGLLKVVVADPRALPVWGLYKYIRFMSVNKQDASAY----EIAFWSK 272
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLY----TIITIMKSFGKSGI 333
++ P++ ++M LIA + L SRS + GI G + Y T + FG +
Sbjct: 273 VLHPVLTLSMILIAIPMLLGSSRSTGMGRRMLAGILVGLVYYLVSRTFAYLALLFGMNAF 332
Query: 334 LLPVAAALIPVILTISLSILIL 355
L AA+ P +L I ++L+L
Sbjct: 333 L----AAIAPPVLFIGAAMLLL 350
>gi|260754017|ref|YP_003226910.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258553380|gb|ACV76326.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 364
Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
R P +I + +PF L+ ++ LN+ SE++ +A GIS Q+L P + L+G +
Sbjct: 64 RTPQLIARFLPFAVLLGVLITLSTLNQNSEIISMKAAGISAHQILMPLIASCFLIGCVS 122
>gi|56552290|ref|YP_163129.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ZM4]
gi|56543864|gb|AAV90018.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 364
Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
R P +I + +PF L+ ++ LN+ SE++ +A GIS Q+L P + L+G +
Sbjct: 64 RTPQLIARFLPFAVLLGVLITLSTLNQNSEIISMKAAGISAHQILMPLIASCFLIGCVS 122
>gi|241761652|ref|ZP_04759739.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|241373960|gb|EER63493.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 364
Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
R P +I + +PF L+ ++ LN+ SE++ +A GIS Q+L P + L+G +
Sbjct: 64 RTPQLIARFLPFAVLLGVLITLSTLNQNSEIISMKAAGISAHQILMPLIASCFLIGCVS 122
>gi|50083533|ref|YP_045043.1| hypothetical protein ACIAD0255 [Acinetobacter sp. ADP1]
gi|49529509|emb|CAG67221.1| conserved hypothetical protein; putative permease [Acinetobacter
sp. ADP1]
Length = 356
Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN----YSISRGAVLAATRVPLIIQQI 66
K+ KTT +LG I++ ++ + + +GEL N YS + + P + +I
Sbjct: 9 KHVTKTTALAMLGTTIVLVILQV--LFTYLGELSNLKADYSAWQAFLYVLWGAPRYLYEI 66
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
+P L+ I+ L SEL++ R++GIS+W+++ + +++L
Sbjct: 67 LPISALIGAILGLGTLASNSELIVMRSVGISLWRIVGWVIRSALVL 112
>gi|292493020|ref|YP_003528459.1| permease YjgP/YjgQ family protein [Nitrosococcus halophilus Nc4]
gi|291581615|gb|ADE16072.1| permease YjgP/YjgQ family protein [Nitrosococcus halophilus Nc4]
Length = 354
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 87/203 (42%), Gaps = 14/203 (6%)
Query: 29 FVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSEL 88
F+ +L E+ GE NY + A +P I ++P L+ +++ +L SEL
Sbjct: 32 FITELEEV----GE-GNYGVMDALRYTAYSIPQYIYDLLPVAALLGSVLGLGSLAGQSEL 86
Query: 89 VISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSD 148
V RA G S+ ++ + ++ + T+L+ +A ++ L K ++++
Sbjct: 87 VAMRAAGFSVGRITRSALATGMIFVVVTILMGEVLAPPAKQAANTLRSLAKTGHLSEQAE 146
Query: 149 IIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKL 208
W + +N I ++LP N ++D D+++++ A A + D L
Sbjct: 147 RGFWTRNNNNFNRI----GRVLP-NGQYQDIEIFEFDEQHRLRVISRAAGATYHRDGWHL 201
Query: 209 KKVVEYQYGRIPIDKNSTTLNIP 231
+ + RI + TT +P
Sbjct: 202 SDITQ----RIISSQGITTRRLP 220
>gi|299138457|ref|ZP_07031636.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX8]
gi|298599703|gb|EFI55862.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX8]
Length = 785
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 64/315 (20%), Positives = 128/315 (40%), Gaps = 22/315 (6%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG--IFT 116
+P I+ + P +LV ++ F L+RTSEL +A G+S++++ P ++ ++ L +F
Sbjct: 474 IPFILYNVTPLCSLVAVLITFGALSRTSELTAMKATGVSLYRIATPVLLVALALSAILFA 533
Query: 117 VLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ---ISNPQQDIFIGAKKILPEN 173
A + ++ + + + K ++D WM + N + + +
Sbjct: 534 FDETYLPAANRKQEALRSVIKGKPAQTFLRAD-RKWMSGQTLGNKEPTRIFYYQFFDSDK 592
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
+++ + T + R+ + ++D V + V E + R ++ + P
Sbjct: 593 NVFANLTVFEFQPGTFTLTRRIFATSARWDDSVN-RWVFENGWQRT-FSGDAISSYQPFT 650
Query: 234 MDGFQKFSEQ---FASRSFYEIIKKMSFSN--------KSNIFHNYRAETQFYFLIVIPL 282
++ F + EQ F ++MS+S K + F R Q I PL
Sbjct: 651 LNSFPEIHEQPGYFKKEDRQS--QEMSYSELSKYIRDLKQSGFDTTRLRVQLNRKIAYPL 708
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
M + M ++A +L + + A GI + I I ++ G L + AA
Sbjct: 709 MALVMAILAVPFALSTGKRGGLAGMGA-GIGVAISYWVIAAIFENLGNVNSLPSILAAWS 767
Query: 343 PVILTISLSILILLQ 357
P IL + +LL+
Sbjct: 768 PDILFAMVGTYLLLR 782
>gi|329894347|ref|ZP_08270217.1| putative permease [gamma proteobacterium IMCC3088]
gi|328923143|gb|EGG30466.1| putative permease [gamma proteobacterium IMCC3088]
Length = 353
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
NY+ S+ + A VP I ++ P L+ +V L TSELV+ R G+S W LL
Sbjct: 42 NYTFSKALLYVAASVPARIVELAPIGILIGVLVALGQLASTSELVVIRGAGLSSWHLLR 100
>gi|113460663|ref|YP_718729.1| permease [Haemophilus somnus 129PT]
gi|112822706|gb|ABI24795.1| conserved permease [Haemophilus somnus 129PT]
Length = 356
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 148/370 (40%), Gaps = 24/370 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L LL + L +I E +G+ Y + + + +P
Sbjct: 1 MMNTLDRYIGKNILGAILATLLMLVGLSAIIKFVEQFRSIGK-GTYDVIQATLFTLLTMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ +++ NL SEL++ ++ G S +++ + ++ L + T+++
Sbjct: 60 KDIETFFPMAALLGSLIALGNLASRSELIVIQSAGFSRFRIGLAVMKTALPLMLITMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E D+ + G W + SN FI +I + + D
Sbjct: 120 EWGIPQTEHFARDMRAKAISGGSMLSVKNSIWARDSND----FIYVGRITNDIRL-NDIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-------DKNSTTLNIPIK 233
+ D K ++ A+ A + K KL + + Q I D STTL P K
Sbjct: 175 IYSFDDKRQLKQVTHANQASFEHGKWKLSGINQSQIFADEIKTINRLKDNWSTTLT-PDK 233
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + Y IK M + + R E F+ + P+ + M ++A S
Sbjct: 234 LGIASLRPTSLSMTGLYNYIKFMKETGQDA----KRFELTFWQKVFQPVSVAVMMMLALS 289
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL--LP-VAAALIPVILTISL 350
RS + GIF GF+ Y I I+ G+ +L +P V AALIP +L + L
Sbjct: 290 FIFGSLRSVTAGARIVTGIFFGFLFYVINEIL---GRLSLLYDIPIVLAALIPSLLFMIL 346
Query: 351 SILILLQKED 360
+L +K +
Sbjct: 347 IWWLLNRKRE 356
>gi|330874293|gb|EGH08442.1| hypothetical protein Pgy4_05807 [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 213
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 21/210 (10%)
Query: 11 KYYLKTTLYFLLGAM-ILVFVIDLNEIQNQMGELPN-YSISRGAVLAATRVPLIIQQIIP 68
+Y K+ L +L + I++ ++ L ++MG++ + Y+++ P + +P
Sbjct: 6 RYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISDTYTLADALSYVMLTAPRRVYDTLP 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISI----WQLLNP---FVVGSILLGIFTVLVIN 121
L+ ++ L +SEL I RA G+SI W ++ P +V +L+G + +
Sbjct: 66 MAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVGEY----VA 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
P A + + L Q +GD Q + W + Q + FI + P N + T
Sbjct: 122 PYAENQAQAARSLAQ---GSGDAQSARHGLW----HRQGEEFIHINTVQP-NGLMLGVTR 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKV 211
D + ++ A A D +LK V
Sbjct: 174 YRFDDQRHMLTSSFAKEANFKTDYWELKDV 203
>gi|311694208|gb|ADP97081.1| permease YjgP/YjgQ family protein [marine bacterium HP15]
Length = 345
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 80/191 (41%), Gaps = 19/191 (9%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
+I F+ +L++I+N NY I +P I +P + +V ++
Sbjct: 20 LIFAFIAELDDIRN------NYQILDALWYVFLTLPRRIYDYLPLGAFMGCLVGLGSMAS 73
Query: 85 TSELVISRAIGIS----IWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKD 140
+SEL + RA G+S +W + P ++++ + VL+ +A E++ Q +K
Sbjct: 74 SSELTVVRAAGVSLKRIVWSAMKP----ALVIVVLGVLIGEYLAPPAERVA----QSYKA 125
Query: 141 NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAI 200
S++ + + + D +I + P N + + D +++ A+ AI
Sbjct: 126 VALGAGSNVASASGVWHKEGDSYIHLNAVQP-NGVLHGVSRFQFDDDRQLLAASFAERAI 184
Query: 201 IYNDKVKLKKV 211
D L+ V
Sbjct: 185 YQGDHWLLENV 195
>gi|145219916|ref|YP_001130625.1| permease YjgP/YjgQ family protein [Prosthecochloris vibrioformis
DSM 265]
gi|145206080|gb|ABP37123.1| permease YjgP/YjgQ family protein [Chlorobium phaeovibrioides DSM
265]
Length = 441
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 53/269 (19%), Positives = 105/269 (39%), Gaps = 48/269 (17%)
Query: 11 KYYLKTTLY-FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAV--LAATRVPLIIQQII 67
+Y LK + F + ++FV+ L + I GA+ L A + ++
Sbjct: 6 RYILKAHVGPFFFAFLTIIFVLILQFFASFADRFIGRGIGFGALVELIALQSAWMVGLAA 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL---VINPIA 124
P L+ ++ F L TSE+ + RA G+S+++L+ P ++ ++L F V+ P+A
Sbjct: 66 PMAVLIAVVMAFGALTTTSEMTVFRASGVSLYRLMIPILLAGLVLSFFVERFNNVVQPLA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ +D DI+ K P I E+ S +
Sbjct: 126 NYQARSLMD--------------DIV-----------------KAKPNFGITENAFSPLV 154
Query: 185 DKKNKIIHRKD------ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
D + ++ + D D+ I + + + V+ + GRI + L + ++
Sbjct: 155 DGYSILVRKSDERTGGIGDIIIYDSTRPDFRSVITAEEGRISFSDDGGYLLLTLRNGEIH 214
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
+ + Y + +KMSF +F +
Sbjct: 215 EVQQ-----PDYRLYRKMSFQQHRYVFES 238
>gi|148244955|ref|YP_001219649.1| permease [Candidatus Vesicomyosocius okutanii HA]
gi|146326782|dbj|BAF61925.1| permease [Candidatus Vesicomyosocius okutanii HA]
Length = 360
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 115/265 (43%), Gaps = 35/265 (13%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
NY++ +P ++ I L+ +++ NL TS+LVI R+ G+SI Q+ N
Sbjct: 43 NYTVFEATKYIILNIPAVMYSHSSVIILLGSLLALTNLASTSQLVIIRSSGVSIMQISNI 102
Query: 105 FVVGSILLGIFTVLV---INPIATS-GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ 160
V +++ +L+ + PI T E + ++Q ++Q+ W++
Sbjct: 103 VVWVALMFIAIIILIGELVAPITTEYAECLRSKALEQNMTCRNQQEF----WLK----DN 154
Query: 161 DIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP 220
+FI KK ++D T I + + +D A + ++L K + YQ +
Sbjct: 155 GLFIHVKKDFDAKS-FQDITFIKLRAPGVLDSIIYSDNATFNGNNLELNKPIHYQLSK-- 211
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFA--------------SRSFYEIIKKMSFSNKSNIFH 266
+ TT + + F+K+S Q + S + + K+MSF +N+
Sbjct: 212 -NGELTTFS----KNYFEKYSVQISFNQKLIKNLKKDPRKLSTWHLYKQMSFLTNNNLVA 266
Query: 267 NYRAETQFYFLIVIPLMLVAMTLIA 291
+ E + Y ++P+ LVAM L +
Sbjct: 267 DI-VEIEIYKRFMMPVTLVAMILFS 290
>gi|259419313|ref|ZP_05743230.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
gi|259345535|gb|EEW57389.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
Length = 379
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRG-AVLA-----ATRVP 60
RY YL L+F A+ILV V +N + L ++ I G +VLA A +P
Sbjct: 6 RYVLSQYL---LFFGFFALILVAVFWINRAVS----LFDWLIGDGQSVLAFLEISALSLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSIL 111
+++ ++P + V LN SEL + RA G S WQL P + +L
Sbjct: 59 NLVRMVLPLAAFAATVWVTNRLNSESELTVLRATGSSPWQLARPAMAFGVL 109
>gi|262370180|ref|ZP_06063507.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|262315219|gb|EEY96259.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 356
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV----PLIIQQI 66
K+ KTT +LGA ++ V+ + + +GEL + GA A V P + +I
Sbjct: 9 KHVTKTTAMAMLGATAILSVLQI--LFTYLGELGSLKEGYGAWDALRYVLWGAPQYLYEI 66
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
+P L+ +++ L SEL++ R++G+S+W+++ + +++L
Sbjct: 67 LPIAALIGSVLGLGTLASNSELIVMRSVGVSLWRIVGWVIRSALIL 112
>gi|296115280|ref|ZP_06833920.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
23769]
gi|295978183|gb|EFG84921.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
23769]
Length = 372
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 67/360 (18%), Positives = 144/360 (40%), Gaps = 43/360 (11%)
Query: 24 AMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNIVVFFN 81
A +++ ++++ + ++ E+ + + VL A R+PL+ +P L+ ++
Sbjct: 32 AAVIIALMEVLALLEEVTEIMSRHLGLSGVLYYAVIRLPLLFGNAMPLAVLIGALITLVQ 91
Query: 82 LNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN 141
L ++E+ I RA G+S L F+ + LG+ V+V + +A E I + W
Sbjct: 92 LTSSNEISIMRAAGLSTAGLFRLFLPAVLGLGVLCVVVDDQVAPRSE---IAQARWWNST 148
Query: 142 GDKQKS---DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN------KIIH 192
D+ W + + IG H + +T+ +++ K+IH
Sbjct: 149 APAPNGVTRDV--WFRTG--MTLVNIGGVA-----HGGRELHDVTVYRRDDEGALQKVIH 199
Query: 193 RKDA-----------DLAIIYNDKVKLKKVVEYQYGRIPID-KNSTTLNIPIKMDGFQKF 240
D A+ +++ V R+ +D + T ++ ++M
Sbjct: 200 LPTVRYFINRWSGVPDHALTVLSPTRVEDVALQDDTRLTLDWPRALTPDVLLQMSENTPL 259
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S R + S++S F T+ I++PL M L+A V R
Sbjct: 260 SIMTMVRVLHNAFP----SSQSPAFF----MTEILGRIMLPLTFTVMLLLAIPVVYIPPR 311
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ + + + +G + ++++ G +G L V A + +++ I + +LL+ E+
Sbjct: 312 AGARSWLPVWCLGAGLVFVVFQGLLRALGNAGTLPSVVAVFVGIVIFILGVVTVLLRIEE 371
>gi|34558361|ref|NP_908176.1| permease [Wolinella succinogenes DSM 1740]
gi|34484080|emb|CAE11076.1| conserved hypothetical protein-PREDICTED PEMEASE [Wolinella
succinogenes]
Length = 355
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 126/300 (42%), Gaps = 27/300 (9%)
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN--PI 123
I+P ++ I++F L RT+EL +IG S Q+ P ++G LL F +V+N P
Sbjct: 61 ILPIALVLAQILLFVVLLRTNELTALLSIGYSKRQITTP-LLGIALLFTFGFIVLNATPF 119
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + E++ L Q + N ++ + D +I KI P E
Sbjct: 120 AYAKERVDTILDQGYVGNFKRE---------LFVKYHDSYIYFDKIYPLLQKAEGVKVYR 170
Query: 184 I--DKKNKIIHRKDA---DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ D+ + I K+A D N+ + + E G P++ + ++GF+
Sbjct: 171 LEGDRVAQWIEAKEARFVDNHWRLNEAMVMTIPSELTLGGSPLEVEKV--DFMEVLEGFR 228
Query: 239 -----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML-VAMTLIAA 292
E+ + S + I+ MS + + ++ + Y L++ P + M L+A
Sbjct: 229 PRILDSIYERHGAVSIIDAIESMSLLLEQQV-NSQKIRGILYSLVLFPFFAPLCMVLVAY 287
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + N IIV I + + + + SG + P + LIP+IL +L++
Sbjct: 288 YMPITMRYGNLA-IIVFAAILGVLLFWGLFFALSRLSMSGFIHPEVSLLIPMILWTALAL 346
>gi|317486217|ref|ZP_07945051.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
gi|316922516|gb|EFV43768.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
Length = 385
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 83/388 (21%), Positives = 162/388 (41%), Gaps = 66/388 (17%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGEL---PNYSISRGAVLAAT 57
MP +L R FK + F+L +L+ +I ++ QM EL + I +L
Sbjct: 1 MPSLLQRQIFK---EIANLFVLAVGVLLTLILISR-AVQMRELFLGLDLGILDTVLLFGY 56
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
PL + +IP ++ + F ++ ELV RA GI+I+Q+L ++ S++ + T+
Sbjct: 57 MTPLFLMLVIPIACMLSVFLTFLRMSTDRELVALRAGGINIYQMLPAPLLFSVICMLLTL 116
Query: 118 LV---------------INPIATSGEKIGID------------LIQQWKDNGDKQKSDII 150
V I IA + ++ + L + + GD S ++
Sbjct: 117 WVSLHWLAWGMGHFRETILEIANTRARVVVQPGVFNTDFPNLVLFARQVNPGDGDMSQVL 176
Query: 151 PWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKK 210
S+P++ + I A PE D ++ + +D + +
Sbjct: 177 V-DDRSHPERHMTILA----PEGRFDTD-----TERGELVFLLEDGKIYTTDKKGASVLA 226
Query: 211 VVEYQYGRIPIDKNSTTLNI----PIKMDGFQKFSEQFASRSFYEIIK-KMSFSNKSNIF 265
EY+ R+P+D +L++ P +M + +S + E +K +++NK +
Sbjct: 227 FDEYKV-RLPLDSLFKSLDLGDVRPREMSW-----SKLSSITREEALKVDANYANKLEVE 280
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR-SNQPRIIVAYGIFSGFMLYTIITI 324
+ R P+ +A+TL ++ F Q +++A +F F+ Y+++++
Sbjct: 281 RHKR--------WAYPVACIALTLFVLPLASAFEGLHRQTGLMLALAMF--FVYYSLMSL 330
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSI 352
S G+SG + P +P IL + L I
Sbjct: 331 GFSTGESGAIPPSIGLWVPNILFLCLGI 358
>gi|189500558|ref|YP_001960028.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
gi|189495999|gb|ACE04547.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
Length = 441
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRG----AVLAATRV 59
IL+RY K ++ FL + ++F++ L + + G A L + +V
Sbjct: 3 ILYRYILKEHIGP---FLFSFITILFILTLQFVTRFFDRFAGKDL--GFIVIAELISLQV 57
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
++ +P LV ++ F NL +SE+ + RA G+S+++L+ P +V + LL
Sbjct: 58 AWMVVLALPMAVLVATLIAFGNLANSSEMTVMRAGGVSLYRLVFPVLVAAALL 110
>gi|222110916|ref|YP_002553180.1| permease yjgp/yjgq family protein [Acidovorax ebreus TPSY]
gi|221730360|gb|ACM33180.1| permease YjgP/YjgQ family protein [Acidovorax ebreus TPSY]
Length = 369
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 60/331 (18%), Positives = 131/331 (39%), Gaps = 24/331 (7%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
Y +S + A +P + +++P L+ I V L ++SE I R G+ W+ L+
Sbjct: 46 GYQLSHALLFVALSLPQHLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALST 105
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
++ + TV+V + IA + EK L++ + G W++ I +
Sbjct: 106 LLMLGCAFVMVTVIVGDYIAPASEK-AASLVKA-RRLGQISTGATGAWLKERQGDHSIAV 163
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQY-----G 217
+ + P N D + ++ A+ A + D L++V + G
Sbjct: 164 NVRAVDP-NGAMRGVRVFEFDARGRVAATIQAEQATFDDARDAWNLQQVERTLFEAEADG 222
Query: 218 RIPIDK-NSTTLNIPIKMDGFQKFS-----EQFASRSFYEIIKKMSFSNKSNIFHNYRAE 271
+ + + TL P ++ + ++ A+ + ++ + + +S R E
Sbjct: 223 GMRVSRLQEPTLRWPTRISPDMVAASLLKPDKMATIELFRFVRHLEANGQS----AQRYE 278
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK- 330
+F+ + PL + M +++ + RS V G+ +G + + + G
Sbjct: 279 IEFWRKVFYPLSCLVMVVLSLPFAYLHFRSGGIAGYVFGGVMAGISFFLLNNVFGFAGNL 338
Query: 331 ---SGILLPVAAALIPVILTISLSILILLQK 358
S L A LI +L+++ ++L++
Sbjct: 339 QNWSPWLTAAAPGLIYSVLSLAAFGWLVLRR 369
>gi|149186433|ref|ZP_01864746.1| predicted permease [Erythrobacter sp. SD-21]
gi|148830022|gb|EDL48460.1| predicted permease [Erythrobacter sp. SD-21]
Length = 409
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 67/329 (20%), Positives = 134/329 (40%), Gaps = 62/329 (18%)
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN-PFVVGSILLGI 114
AT +P IP L+ ++ F L TSEL + RA+G+S +LL PF++ +L+ +
Sbjct: 58 ATLLPEYASLAIPLGLLLGILLAFRKLATTSELDVFRAVGMSYGRLLRVPFLITGVLMTL 117
Query: 115 FTVLV--INPIAT-SGEKIGIDL------------------------IQQWKDNGDKQKS 147
LV I P++ + E++ +L I++ +D+G + K
Sbjct: 118 NVALVFFIQPVSRFTYERLEYELRSGALGASIKVGEFTTLADRMALRIEESEDDGRQLKG 177
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+ +++N + + SI+ + N + D D I+ ++
Sbjct: 178 I---FARVANDKGQVL-----------------SISAKEGNFLATTDDPDTIIL---RLT 214
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
+V+ + P T ++PI + ++F + Y + + + N +
Sbjct: 215 EGTIVQDTGSQTPRVLTFTRHDLPIDLPAIEEFRARGEDEREYILPELLRIGWADNQTES 274
Query: 268 YRAETQ--FYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM 325
R +Q F F +V +M+ M L+A ++ + RS A G+F ++ +
Sbjct: 275 KRDASQASFNFRLVEVVMMALMPLLAVALGIPPKRSTS-----ALGVFLSIIMVVAYHKV 329
Query: 326 KSFGKS----GILLPVAAALIPVILTISL 350
+G+ G+ P+ A +P L +L
Sbjct: 330 NQYGEDLAAIGMFDPILALWVPFFLFAAL 358
>gi|187250533|ref|YP_001875015.1| permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
gi|186970693|gb|ACC97678.1| Permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
Length = 370
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 167 KKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST 226
K+I+ N +W DK KI KD + + + + +++ V D +
Sbjct: 198 KQIVARNLVW--------DKDEKIWFYKDGVIRY-FEEGITIREEV--------FDTLES 240
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
L + K E+ + S E++KK+SF +S + Y+ +T + + +P+M +
Sbjct: 241 DLKVAPKDISVGDIEEK--AISVRELLKKISFLGRSGLV-TYKEKTNLHNKLAMPVMTII 297
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
M LI ++ + + I+A + S F + ++T+ + G++GIL P A V+L
Sbjct: 298 MCLIGMPFAVTVRKRGKVINIIAALVMS-FSFWWVMTMASTAGQNGILSPFIAGWGIVVL 356
Query: 347 TIS 349
+
Sbjct: 357 AAA 359
>gi|260427478|ref|ZP_05781457.1| permease YjgP/YjgQ [Citreicella sp. SE45]
gi|260421970|gb|EEX15221.1| permease YjgP/YjgQ [Citreicella sp. SE45]
Length = 379
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 84/200 (42%), Gaps = 17/200 (8%)
Query: 10 FKYYLKTTLYFLLG--AMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--RVPLIIQQ 65
F Y+ + L + G A++LV V LN EL + G L T +P ++
Sbjct: 4 FDRYMLSQLMVVFGFFALVLVMVYWLNRSVGLFDELIANGHTAGIFLEFTLLALPGVVAI 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P + V ++ SEL + +A G+S W+L P +V ++G ++ + +
Sbjct: 64 VLPMAAFGAAVYVTNRMSNESELTVLQATGLSPWRLARPVLVFGAIIGAMMAILSHVLVP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ IG L ++ + + ++ +P + + + I PE + + F S
Sbjct: 124 A--SIG-QLRERESEISGSVSARLLHEGTFLHPTRGVTFYIRDITPEGELRDVFLS---- 176
Query: 186 KKNKIIHRKDADLAIIYNDK 205
R+D D AI Y +
Sbjct: 177 ------DRRDPDRAIAYTAQ 190
>gi|126728787|ref|ZP_01744602.1| Predicted permease [Sagittula stellata E-37]
gi|126710717|gb|EBA09768.1| Predicted permease [Sagittula stellata E-37]
Length = 376
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 9/207 (4%)
Query: 10 FKYYLKTTLYFLLG--AMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQ 65
F Y+ + L L G A++LV V +N L N S VL A +P +I
Sbjct: 4 FDRYVLSQLMVLFGFFALVLVSVYWVNRAVVLFDRLINDGHSARIVLEFTALSLPAVIAL 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P T + V L+ SEL + +A G S W+L P +V I++ + ++ + +
Sbjct: 64 VLPMATFAAAVYVTNRLSGDSELTVVKATGFSPWRLARPVLVFGIMVTLMMSVLTHVLVP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
K L + ++ + ++ +P + I + I PE + + S +
Sbjct: 124 QSLK---QLRMREQELSSSVSARLLREGTFLHPSKGITFYIRDITPEGTLQDVLLSDRRE 180
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVV 212
+ ++I+ AD A + D K V+
Sbjct: 181 PEREVIY--TADRAYLIRDDEGPKMVM 205
>gi|110596903|ref|ZP_01385193.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
gi|110341590|gb|EAT60050.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
Length = 359
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 16/133 (12%)
Query: 4 ILWRYFFKYYLK------TTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT 57
IL RY F+ + K TT FL IL+ +++ + + MG N SI +
Sbjct: 3 ILDRYIFRQFAKAFIFTSTTFVFLF---ILITMVE--HLDDMMGR--NLSIFQIIGYYLL 55
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
+P + P +L+ +I+V L+ +SEL R+ G+S+ QLL PF+ G+ + +
Sbjct: 56 SIPSTVLVTAPVSSLLASILVAGRLSASSELSAIRSAGVSMRQLLYPFLAGASFIAAVNL 115
Query: 118 LV---INPIATSG 127
+ I P A SG
Sbjct: 116 VNSCWIAPAAFSG 128
>gi|320352233|ref|YP_004193572.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
2032]
gi|320120735|gb|ADW16281.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
2032]
Length = 360
Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 78/373 (20%), Positives = 160/373 (42%), Gaps = 32/373 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNE-IQNQMGELPNYSISRGAVLAATRVPLI 62
+L+RY ++L+ + + L +ID E I N + + ++S+ A +P I
Sbjct: 3 LLYRYILAHFLRNLGMIMASFITLYLLIDFFEKIDNFLEKGKSFSLI--ATFFFANIPFI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I + P L+ +V LN ++EL+ +A GI + ++ P ++G+ L L ++
Sbjct: 61 IDLMSPVCILLAGVVTLGVLNHSNELIALKACGIPLKKITVP-IIGAALACTLLFLAMDQ 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-----QDIFIGAKKILPENHIWE 177
+ I + Q W +K+ +P N + Q+ F + P+ ++++
Sbjct: 120 YVLP-KTIAVT-NQIW----NKEIKGKVPLGIYRNGRYYYRGQEGFYSFSRPDPQKNLFK 173
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT------LNIP 231
+F+ DK++ A++A ++N V + + Q D+ +T +N P
Sbjct: 174 NFSYTVWDKEHAANTLIAAEIA-VWNKGVWTLRNGQIQKA-AGGDRFATQVFTNRRINFP 231
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY----FLIVIPLMLVAM 287
D F + + S ++ K+ + +A FY + ++ +L+
Sbjct: 232 ETPDDFFVPAYRSMELSLVQLYKETQHTRSEE--ERSKAWADFYGRISYTLLGLPLLLLG 289
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
+ V ++ R I V+ G+ F+ + + T ++S K+ + P+AAA I V L
Sbjct: 290 LPLLLLVYRKWGRDLSLAIPVSCGM--AFLCWGVYTTLQSLAKASYIPPLAAA-ISVHLL 346
Query: 348 ISLSILILLQKED 360
+ LL +ED
Sbjct: 347 VGCVGFFLLLRED 359
>gi|78188415|ref|YP_378753.1| hypothetical protein Cag_0437 [Chlorobium chlorochromatii CaD3]
gi|78170614|gb|ABB27710.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
Length = 443
Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P LV ++ F L TSE+ + RA GIS+++++ P +V S+LL FTV N +
Sbjct: 65 LPMAVLVAVVMSFGTLTTTSEMTVCRASGISLYRVMVPVIVVSLLLS-FTVERFNNV 120
>gi|16332044|ref|NP_442772.1| hypothetical protein sll0496 [Synechocystis sp. PCC 6803]
gi|1001356|dbj|BAA10843.1| sll0496 [Synechocystis sp. PCC 6803]
Length = 394
Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 77/366 (21%), Positives = 146/366 (39%), Gaps = 59/366 (16%)
Query: 32 DLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVIS 91
+L+++ N++ E N +++ A + +VP + +P ++ ++ F L+ E++
Sbjct: 52 NLSDLGNKIVE-KNLPVAKAAEVLLLKVPEFLAYSLPVAVMLATMMTFGRLSGDCEIIAI 110
Query: 92 RAIGISIWQLLNPFVVGSIL-------LGIFTVLVINPIATSGEKIGIDLIQQWKDNGDK 144
R+ G+S+++L+ P VV S+L L + V V N ATS ID + N D
Sbjct: 111 RSCGVSLYRLILPAVVLSLLVTGWAFVLTEWVVPVANYRATSILIESIDEEHPFWQNRDV 170
Query: 145 QKSDIIPWMQISNPQQDIFIGAKK----ILPENHIWEDFTSITIDK--KNKIIHRKDADL 198
+ +++ N Q A++ + E ++ ++T+ + +N + H +D
Sbjct: 171 FYPEFEE-IKLDNGQT-----ARRLKSLVYAEKFDGKEMQNLTVLQWTENHLKHIVLSDN 224
Query: 199 AIIYNDK----------VKLKKVVEYQYGRIPIDKNSTTL---NIPIKMDGFQKFSEQFA 245
A ND +L + +YQ +P L G + A
Sbjct: 225 ATWNNDNKRWDFFHGTVYRLTETEDYQEA-VPFTNKQIALPQSAFDFARQGRDPYEMTIA 283
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
Y I K+ K F R E + F P + + ++ +++ R ++
Sbjct: 284 EAQDYIKILKLIGDEKKTQFFQVRTEQKLAF----PFVCIVFAVVGSAIGARPQRISRAT 339
Query: 306 -------IIVAY---GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
II AY G FSG S G G++ P AA +P + + + I +L
Sbjct: 340 GFGLTIVIIFAYYILGFFSG-----------SLGIVGLISPTLAAWLPNFVGLGVGIWLL 388
Query: 356 LQKEDG 361
+ G
Sbjct: 389 YEFNQG 394
>gi|15618903|ref|NP_225189.1| hypothetical protein CPn0995 [Chlamydophila pneumoniae CWL029]
gi|15836526|ref|NP_301050.1| hypothetical protein CPj0995 [Chlamydophila pneumoniae J138]
gi|16752032|ref|NP_445398.1| hypothetical protein CP0860 [Chlamydophila pneumoniae AR39]
gi|33242364|ref|NP_877305.1| hypothetical protein CpB1032 [Chlamydophila pneumoniae TW-183]
gi|4377324|gb|AAD19132.1| CT838 hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|7189772|gb|AAF38649.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
gi|8979368|dbj|BAA99202.1| CT838 hypothetical protein [Chlamydophila pneumoniae J138]
gi|33236875|gb|AAP98962.1| hypothetical protein CpB1032 [Chlamydophila pneumoniae TW-183]
gi|269302795|gb|ACZ32895.1| putative permease, YjgP/YjgQ family [Chlamydophila pneumoniae
LPCoLN]
Length = 366
Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 85/407 (20%), Positives = 169/407 (41%), Gaps = 117/407 (28%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT------------ 57
+K +L T +F L +++++ +I I + + L +GA AA+
Sbjct: 4 WKRHLLTRFWFALTSLLVLALIFYASIHHSLHTL------KGASTAASGASVKLSILYYL 57
Query: 58 -RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVV-GSILLGIF 115
++ L + ++P + V F + E+++ +A G+S+ L++P ++ G++++ +
Sbjct: 58 AQISLKAEFLMPQLVAVATTSTLFAMQNKREIILLQASGLSLKSLMHPLLLSGAVIMMVL 117
Query: 116 TVLV--INPIATSGEKIGIDLIQQWKDNGDKQKSDI----IPWMQISNPQQDIF--IGAK 167
++PI EKI I K+N D+ +D IP + + + ++ I K
Sbjct: 118 YANFQWLHPIC---EKISIT-----KENMDRGTTDKEQGKIPALYLKDQTVLLYSSIEPK 169
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT 227
+ N W K K I+ + LA TT
Sbjct: 170 TLTLNNVFW--------IKDPKTIYTME-KLAF-------------------------TT 195
Query: 228 LNIPIKMDGFQKFS---------EQFASRSFYEI---------IKKMSFSNKSNIFHNYR 269
L++PI ++ Q F+ E F + F EI K S NK+ + ++
Sbjct: 196 LSLPIGLNVTQFFANDSENLELKEFFDMKEFPEIEFNFYENPFSKLFSAGNKNRLSEFFK 255
Query: 270 A---------------------ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
A QFY++++ PL +A +++A + L FSR+ P + +
Sbjct: 256 AIPWNATGLGLSTQVPQRILSLLAQFYYVLISPLACMAAIILSAYLCLRFSRT--PTVTL 313
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
AY I G + I F K+GI+L +++++P + ++ +++L
Sbjct: 314 AYLIPLG-----TVNIFFVFLKAGIVL-ASSSVLPTLPVMAFPLIVL 354
>gi|126661397|ref|ZP_01732459.1| hypothetical protein CY0110_10922 [Cyanothece sp. CCY0110]
gi|126617328|gb|EAZ88135.1| hypothetical protein CY0110_10922 [Cyanothece sp. CCY0110]
Length = 353
Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 66/327 (20%), Positives = 142/327 (43%), Gaps = 44/327 (13%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG---- 113
+VP +P ++ ++ + L+ SEL+ R+ G+S+++L+ P +V S+ +
Sbjct: 36 KVPEFTAYALPISVMLSTLLTYGRLSNDSELIAFRSCGVSLYRLIIPAMVMSLAVTGVTF 95
Query: 114 IFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDII--PWMQISNPQQDIFIGAKKI-L 170
+ + LV+ I ++ +Q+ D+ Q DI + Q++ P D K +
Sbjct: 96 LMSELVVPAANYRATAILVEYLQE--DHPYWQNKDIFYPDYEQVTLPNGDQEKRLKHLFF 153
Query: 171 PENHIWEDFTSITI-----DKKNKIIHRKDADL-----------AIIY--NDKVKLKKVV 212
E + ++T+ ++ N+I+ A IY + K+
Sbjct: 154 AEQFDGQHLKTLTVLEWLEERLNRIVVSDSATWNGQEETWDFFNGTIYQLSSDASYKEAY 213
Query: 213 EYQYGRIPIDKNSTTLNI----PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNY 268
+++ ++P+ K + + P +M+ Q +R + +I+K M K +F
Sbjct: 214 PFEHRQLPLTKAAFEFALQGRDPYEMNIIQ-------ARQYMKILKMMGDDKKLRMFQ-V 265
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
R + + F + + V + + A+ + SR+ + V IFS ++L +I S
Sbjct: 266 RIQQKLAFPFICVVFGVVGSALGATPQ-QMSRATGFGLSVVI-IFSYYLLGFLI---GSL 320
Query: 329 GKSGILLPVAAALIPVILTISLSILIL 355
G G++ PV A +P +L +++ +L
Sbjct: 321 GLMGLISPVLAGWLPNLLGLAMGGWLL 347
>gi|193212079|ref|YP_001998032.1| permease YjgP/YjgQ family protein [Chlorobaculum parvum NCIB 8327]
gi|193085556|gb|ACF10832.1| permease YjgP/YjgQ family protein [Chlorobaculum parvum NCIB 8327]
Length = 383
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 76/367 (20%), Positives = 150/367 (40%), Gaps = 44/367 (11%)
Query: 1 MPG-----ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL- 54
+PG I+ RY + +L T +F L + +F+I +N I+N + + I G ++
Sbjct: 20 LPGLGKLSIIDRYIIRQFL-TIFFFSLASFAALFII-INLIEN-LDRFMSRQIPVGQIII 76
Query: 55 -AATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG 113
+ +P P L+ ++ V L+ SEL +A G+S+ +L+ PF++ + +
Sbjct: 77 YYLSGLPDTFLLTSPLSVLLASLFVTGKLSMQSELPALKAAGMSLSRLMKPFLLATFFIT 136
Query: 114 IFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
F ++ I + + +++ + +Q+ + + + N +IL
Sbjct: 137 AFNLVNSCFITPAMYDLSKGYEKRYLKSQKEQQEEAVHIRESKN----------RILTVG 186
Query: 174 HIWEDFTSI------TIDKKNKIIHRKDADLA---------IIYNDKVKLKKVVEYQYGR 218
I D S T D +++ R DAD + YN K + + GR
Sbjct: 187 QINRDRQSAVSVSLETFD-GSRLASRLDADSLRISSNGRHWVFYNTKQR-----TFVNGR 240
Query: 219 IPIDKN--STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYF 276
+ N + TL + + + F + + + ++ +S + RAE +
Sbjct: 241 ETLVANPGADTLKLALAKNTFTMIDADPDEMNLVQHLAFIAQKKRSGLPGLERAEVELQT 300
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
I +PL + + LI +S RS + A + G ++ + S G G++ P
Sbjct: 301 KIALPLASMLIVLIGVPLSTRKKRSGLA-LEAATSLLIGLFYLGMLKTIGSLGYDGLINP 359
Query: 337 VAAALIP 343
V AA +P
Sbjct: 360 VLAAWLP 366
>gi|261855830|ref|YP_003263113.1| permease YjgP/YjgQ family protein [Halothiobacillus neapolitanus
c2]
gi|261836299|gb|ACX96066.1| permease YjgP/YjgQ family protein [Halothiobacillus neapolitanus
c2]
Length = 376
Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 42 ELPNYSISRGAVLAATRV----PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS 97
ELP + S A+ A + V P + P LV ++ NL SEL + R G+S
Sbjct: 35 ELPKVNASYSAIDALSFVLMTTPGYLYDFYPAAVLVGGLLSLGNLAAHSELTVMRCSGMS 94
Query: 98 IWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNG 142
+++L P +VG+ +L + +L+ I G++ ++ + + +G
Sbjct: 95 MFRLARPVLVGATILALIGMLMGETIGAWGQEKANEMRAEAQGSG 139
>gi|323697853|ref|ZP_08109765.1| permease YjgP/YjgQ family protein [Desulfovibrio sp. ND132]
gi|323457785|gb|EGB13650.1| permease YjgP/YjgQ family protein [Desulfovibrio desulfuricans
ND132]
Length = 375
Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 62/293 (21%), Positives = 129/293 (44%), Gaps = 23/293 (7%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++PLI+ Q++P + L+ +V L R+ E++ RA G+S + FV+ +++ +
Sbjct: 57 KIPLIVSQLMPAVFLLAMVVQLGVLARSREMLALRAGGVSFAWFIRFFVIYALIWSCGQL 116
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ + GE+ + + WK++ K++ D + + + AK+ P
Sbjct: 117 VFSQFLGVFGEQ---EANRIWKEDVRKKQLDELTIHNLWFRDGPFIVQAKEAQPSKSRAS 173
Query: 178 DFT--SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-IPIDKNSTTLNIPIKM 234
D T T D + ++I +A A+I + L V E I +D+ S L++ +
Sbjct: 174 DITIYEFTTDNQ-ELIRILNAKKALIDDHGWGLLDVHELDTRTFITVDRPSQFLSVRQNL 232
Query: 235 DGFQ--KFSEQFASRSFYEIIKKM-----SFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ + A E+ + + S SN + + + + F +V+ + L+A+
Sbjct: 233 KAYAAVELKGDTAQLPLIELSRAIARLQESGSNVEMLLTIWHGKLSYAFSMVV-MALLAL 291
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
L+ FS + I +A + F+ Y + + + G+ G+L P+ AA
Sbjct: 292 VLVT------FSENVYANIGLALILI--FIQYGMHVVGATAGEKGVLPPILAA 336
>gi|291614864|ref|YP_003525021.1| permease YjgP/YjgQ family protein [Sideroxydans lithotrophicus
ES-1]
gi|291584976|gb|ADE12634.1| permease YjgP/YjgQ family protein [Sideroxydans lithotrophicus
ES-1]
Length = 358
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 75/363 (20%), Positives = 149/363 (41%), Gaps = 29/363 (7%)
Query: 13 YLKTTLY----FLLGAMILVF-VIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
YL+ +Y + A+I++F ++DL N MG +Y + + +P I ++
Sbjct: 7 YLRREIYASVALVFAALIMLFALLDLVNELNSMGR-GDYRLGYVLLFVTLTIPGHIYELF 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P L+ I + +SEL + R+ G+S+ Q++ V + L + L IA
Sbjct: 66 PVAVLIGTIFALVQMAASSELTVYRSSGVSLKQMIVMLVKIGLPLVVLCFLFGEVIAPPS 125
Query: 128 EKIGIDL---IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E++ +L Q K + + +S + W + + FI + +LP+ + D +
Sbjct: 126 ERMAQELRMKAQNLKVSVKEFRSGV--WAK----DERSFINVRSMLPDTSL-LDVSIYEF 178
Query: 185 DKKNKIIHRKDADLA-IIYNDKVKLKKVVEYQYGR-------IPIDKNSTTLNIPIKMDG 236
D + A+ A + D+ +L V + + + P + T+LN P +
Sbjct: 179 DATYHLRSITSAEHASYLDEDRWQLDGVRQTLFSKQGATTDNRPRAEWHTSLN-PDILSV 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
EQ ++ + Y+ + + N R E + +V PL ++ M L+A S
Sbjct: 238 LLVVPEQMSAWNLYQYTMHL----RENHQKTSRYEIAMWNKLVYPLAVLVMMLLALPFSA 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + GI G + + + + G P+ +A L ++L++ +L
Sbjct: 294 YQRREGGISGKIFMGIVLGLSFHFVGRLFANVGALNDWSPLLSATAMSWLFLALAMGMLW 353
Query: 357 QKE 359
+ E
Sbjct: 354 RTE 356
>gi|124009520|ref|ZP_01694195.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
gi|123984866|gb|EAY24834.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
Length = 371
Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 136/312 (43%), Gaps = 37/312 (11%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P + P + + + V L +E++ + G+S ++L P+++GS L+ + T
Sbjct: 59 IPYWANSLSPILIFIATVFVTARLATHTEIIAILSSGVSFKRMLVPYLLGSSLIAVLTFY 118
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQK---SDIIPWMQISNPQQDIFIGAKKILPENHI 175
+I + ++ + ++++ K K +D ++I+ P +I + +H+
Sbjct: 119 LIGWVIPKANRVRL----KFENTHIKDKFYFTDRNVHLKIA-PNTFAYIESYD--NTSHV 171
Query: 176 WEDFTSITID-------KKNKIIHRKDADLAIIYNDKVKLK------KVVEYQYG----- 217
FT I ++ K ++ K I++ DK + K K+ E+ G
Sbjct: 172 GYKFTLENISGFEYDGKRQQKKLNSKVECRRILW-DKDRKKWVMENYKITEFNRGDSLNY 230
Query: 218 RIPIDKN-STTLNI-PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY 275
+I ++ T +N+ P + F+EQ S I ++ + Y E Y
Sbjct: 231 KITYGQSLDTLMNLKPSDFESKYMFNEQLTSDQLEAYIAELKQRGVGKL-ETYLVER--Y 287
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQP-RIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
+ P ++ +T+I VS +R +I V +G+ F+ +I + +S GK+G L
Sbjct: 288 ERMAYPFAVIILTVIGVIVSSRKTREGAGLQIAVGFGL--AFIYVMLIMVSRSIGKNGEL 345
Query: 335 LPVAAALIPVIL 346
P+ AA +P IL
Sbjct: 346 PPLVAAWMPNIL 357
>gi|320107369|ref|YP_004182959.1| permease YjgP/YjgQ family protein [Terriglobus saanensis SP1PR4]
gi|319925890|gb|ADV82965.1| permease YjgP/YjgQ family protein [Terriglobus saanensis SP1PR4]
Length = 782
Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP-FVVGSIL-LGIFT 116
+P +I + P L+ +V LNR+SEL +A G+S+++++ P FV+ ++L +G+F
Sbjct: 472 IPYMIYSLTPLCALIAVLVTVGGLNRSSELTAMKASGMSLYRIVAPIFVLAAVLAVGLFA 531
>gi|332307892|ref|YP_004435743.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175221|gb|AEE24475.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 368
Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 134/325 (41%), Gaps = 53/325 (16%)
Query: 4 ILWRYFFKYYLKT-TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA--ATRVP 60
+++RY K +K+ T FL +L+ + N+ + E N I VL A +P
Sbjct: 2 LIFRYLVKETVKSQTAVFL----VLMAIFITNKFVRVLSEASNGDIPASLVLGFLALSMP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT---V 117
++ I+P + ++ L SE+ + RA GIS W + +V ++++ + T
Sbjct: 58 VLASLILPLSLFLGIMLAHGRLYVDSEMTVMRACGISEWYVTRVMLVLAVIMALITGAMT 117
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIP--WMQISNPQQDIFIG--AKKILPEN 173
L + P++ E L +Q D + +IP + Q +N + IF+ P
Sbjct: 118 LWVAPMSVERE---YQLEEQ--AGADTGLTTLIPGRFQQTANEKAVIFVHEIGNDSEPLK 172
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
++ T D +N +H ++Y + L++ +P + L I+
Sbjct: 173 RVFMAQHDTTTDSQN--VH-------LVYAKQGGLRE--------LPDGSETLVLGDGIQ 215
Query: 234 MDG-----------FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR----AETQFYFLI 278
+G F ++ Q A + + +K+S + +F++ AE Q+ F
Sbjct: 216 YEGTLGEKDYRVVEFGEYQIQIAEQEAEQKRRKLSAYTTAQLFNDPSIDAIAELQWRF-- 273
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQ 303
IPL L + +IA +S R +
Sbjct: 274 AIPLSLFFLVIIAVPLSAADPRQGR 298
>gi|109899862|ref|YP_663117.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
gi|109702143|gb|ABG42063.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
Length = 368
Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 132/325 (40%), Gaps = 53/325 (16%)
Query: 4 ILWRYFFKYYLKT-TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA--ATRVP 60
+++RY K +K+ T FL +L+ + N+ + E N I VL A +P
Sbjct: 2 LIFRYLVKETVKSQTAVFL----VLMAIFITNKFVRVLSEASNGDIPASLVLGFLALSMP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT---V 117
++ I+P + ++ L SE+ + RA GIS W + +V ++++ + T
Sbjct: 58 VLASLILPLSLFLGIMLAHGRLYVDSEMTVMRACGISEWYVTRVMLVLAVIMALITGAMT 117
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIP--WMQISNPQQDIFIG--AKKILPEN 173
L I P++ E L +Q D + +IP + Q +N + IF+ P
Sbjct: 118 LWIAPLSVERE---YQLEEQ--AGADTGLTTLIPGRFQQTANEKAVIFVHEIGNDSEPLK 172
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
++ T D +N +H ++Y + L++ +P + L I+
Sbjct: 173 RVFMAQHDTTTDSQN--VH-------LVYAKQGGLRE--------LPDGSETLVLGDGIQ 215
Query: 234 MDG-----------FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR----AETQFYFLI 278
+G F ++ Q A + + +K+S +F + AE Q+ F
Sbjct: 216 YEGTLGEKDYRVVEFGEYQIQIAEQEAEQKRRKLSAYTTMQLFEDSSIDAIAELQWRF-- 273
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQ 303
IPL L + +IA +S R +
Sbjct: 274 AIPLSLFFLVIIAVPLSAADPRQGR 298
>gi|163759136|ref|ZP_02166222.1| hypothetical protein HPDFL43_05210 [Hoeflea phototrophica DFL-43]
gi|162283540|gb|EDQ33825.1| hypothetical protein HPDFL43_05210 [Hoeflea phototrophica DFL-43]
Length = 385
Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 53 VLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
+LAAT +P +I + PF L+ V +N SELV+ A G +L P + S+ L
Sbjct: 40 LLAATIIPSVISVVAPFALLIGVSQVLSGMNSDSELVVIEAAGARPATVLRPVMALSVAL 99
Query: 113 GIFTVLVIN 121
I +LV N
Sbjct: 100 SIMVLLVAN 108
>gi|87198520|ref|YP_495777.1| permease YjgP/YjgQ [Novosphingobium aromaticivorans DSM 12444]
gi|87134201|gb|ABD24943.1| permease YjgP/YjgQ [Novosphingobium aromaticivorans DSM 12444]
Length = 366
Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 38 NQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS 97
N GEL Y + R+P ++ + +P+ L+ I+ LN+ SE++ +A G+S
Sbjct: 52 NGQGELLTY--------VSLRMPQLVSRFLPYSVLLATIITLMTLNQNSEVIAMKAAGLS 103
Query: 98 IWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKD 140
Q+L P + + + T I T ++ W+D
Sbjct: 104 AHQVLAPLFLVAAATSVVTFAFNERIVTRSTST----LKAWQD 142
>gi|224825294|ref|ZP_03698399.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
gi|224602215|gb|EEG08393.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
Length = 358
Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 68/330 (20%), Positives = 131/330 (39%), Gaps = 31/330 (9%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
+Y + + + A +P +++P + L+ +V L +SE I R G+++ Q
Sbjct: 43 SYGVPQMLLYIALLMPGHAYELMPLVVLIGGMVAMTQLATSSEYTIIRTSGVTLAQ---- 98
Query: 105 FVVGSIL-LGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQD 161
V G +L GI ++ + G ++ K + K + + + + Q
Sbjct: 99 -VAGVLLRFGIGFAVITGLLGEFGAPFSEKQAERMKLSATKSMVTQEFHSGIWVKDDQN- 156
Query: 162 IFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRI 219
FI ++LP+N + T DK +++ + A+ + +L+KV E G
Sbjct: 157 -FINVGEMLPDNTLL-GVRIYTYDKDYRLVQTRFAERGTYQRPQHVWRLEKVKETTLG-- 212
Query: 220 PIDKNSTTLNI----------PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR 269
DK +TT + P +D EQ ++ I+ + +SN R
Sbjct: 213 --DKATTTRQLNTLDWHSVIEPSILDVLLVVPEQMSAMDLTTYIEHL----RSNEQKTQR 266
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
E + PL ++M L+A + + R Q I + GI G + + + G
Sbjct: 267 YEIALWSKFFYPLACISMALVALAFTPRQRRHAQLGIRLFVGICLGVAFHFVNRLFAHLG 326
Query: 330 KSGILLPVAAALIPVILTISLSILILLQKE 359
+ AA +P +L + I I +++E
Sbjct: 327 LLYDWNAMFAATLPTLLFLLAGITITVRQE 356
>gi|172036161|ref|YP_001802662.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
gi|171697615|gb|ACB50596.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
Length = 401
Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 139/328 (42%), Gaps = 54/328 (16%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
+VP +P ++ ++ + L+ SEL+ R G+S+++L+ P VV S+++ T
Sbjct: 84 KVPEFTAYALPISVMLSTLLTYGRLSNDSELIAFRGCGVSLYRLIVPAVVMSLVVTGVTF 143
Query: 118 LV---INPIAT-SGEKIGIDLIQQWKDNGDKQKSDII--PWMQISNPQQDIFIGAKKI-L 170
LV + P A I ++ +Q+ ++ Q DI + Q+ P + K +
Sbjct: 144 LVSELVVPAANYRATAILVEYLQE--EHPYWQNKDIFYPDYEQVVLPNGEKEKRLKHLFF 201
Query: 171 PENHIWEDFTSITI-----DKKNKIIHRKDADL-----------AIIYN--DKVKLKKVV 212
E ++ ++T+ ++ N+I+ A IY K+
Sbjct: 202 AEQFDGQNLKTLTVLEWLEERLNRIVVSDSATWNGQEETWDFFDGTIYQLAPDASYKEAY 261
Query: 213 EYQYGRIPIDKNSTTLNI----PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNY 268
+++ ++P+ K + + P +M+ Q +R + +I+K M K +F
Sbjct: 262 PFEHRQLPLTKAAFEFALQGRDPYEMNIIQ-------ARQYMKILKMMGDDKKLRMFQ-V 313
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYG-----IFSGFMLYTIIT 323
R + + F P + V ++ +++ S Q +G IFS ++L +I
Sbjct: 314 RIQQKLAF----PFICVVFGVVGSALG---SMPQQMSRATGFGLSVVIIFSYYLLGFLIG 366
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLS 351
S G G++ PV A +P IL +++
Sbjct: 367 ---SLGLMGLISPVLAGWLPNILGLAMG 391
>gi|255066290|ref|ZP_05318145.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
gi|255049500|gb|EET44964.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
Length = 356
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 25/207 (12%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAA---TRVPLII 63
RY + +Y LL + L EI N++G+L S + GA +A ++P
Sbjct: 6 RYIIRQMAVMAVYALLAFLALY---SFFEIINEVGDLGKGSYN-GATMAQYVLMQMPARA 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P L+ +V L SEL + +A G+S +LL ++L F ++
Sbjct: 62 YELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLL-------LILSQFGLIFAIAT 114
Query: 124 ATSGEKIGIDLIQQWKD------NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
A GE I L Q+ ++ NG + W++ +++ I +++LP+ H
Sbjct: 115 AALGEWIAPVLSQKAENIKSAAINGKISTGNTGLWLK----EKNSIINVREMLPD-HTLL 169
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYND 204
+ KN++ +A+ A++ ND
Sbjct: 170 GIKIWVRNDKNELRQATEAESAVLNND 196
>gi|126031979|gb|ABN71555.1| putative permease [uncultured bacterium]
Length = 365
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 33/53 (62%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI 110
R+P ++ + +P+ L+ I+ LN+ SE+V +A G+S Q+L P ++ ++
Sbjct: 64 RLPQLVARFLPYSALLATIITLATLNQNSEVVAMKAAGLSAHQVLAPLLLTAL 116
>gi|332707452|ref|ZP_08427501.1| putative permease [Lyngbya majuscula 3L]
gi|332353803|gb|EGJ33294.1| putative permease [Lyngbya majuscula 3L]
Length = 388
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG---- 113
++P I +P L+ ++ + L+ SEL+ R+ G+SI++L+ P VV S+L+
Sbjct: 72 QIPQFISYALPMSMLLAALMAYSRLSSDSELIAMRSFGVSIYRLVIPAVVVSLLVTSLTF 131
Query: 114 IFTVLVINPIATSGEKIGID 133
+F LV+ P A KI +D
Sbjct: 132 VFNELVV-PAANYQSKITLD 150
>gi|327481778|gb|AEA85088.1| permease [Pseudomonas stutzeri DSM 4166]
Length = 353
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 65/347 (18%), Positives = 132/347 (38%), Gaps = 38/347 (10%)
Query: 16 TTLYFLLG-AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVV 74
T L ++G A++ F+ +L ++Q NY + P + ++P L+
Sbjct: 18 TVLGIIVGLALLFAFIDELGDVQG------NYGLGDALQYVLLTSPRRLYDMLPMAALIG 71
Query: 75 NIVVFFNLNRTSELVISRAIGISIWQL----LNP---FVVGSILLGIFTVLVINPIATSG 127
++ L +SEL I RA G+S+ ++ + P +V IL+G + + IA +
Sbjct: 72 CLIGLGTLASSSELTIMRAAGVSLGRIVLSVMKPMLVLLVAGILIGEYVAPLTEDIAQAR 131
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ + G+ Q S W + Q++ F+ + P + T D++
Sbjct: 132 RSLA-------QGAGEAQSSKRGLWHR----QENEFVHVNAVQPGG-VLVGVTRYRFDEE 179
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQY-------GRIPIDKNSTTLNIPIKMDGFQKF 240
+++ A A D +L+ + + R P ++ L P +
Sbjct: 180 RRLLSSSFARRASYQGDHWRLENIATTHFRGDHTEVARAPEERWDVQLT-PQLLGTVVME 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
E + + I + +N R F+ ++ P + VA+ L+A S R
Sbjct: 239 PEALSITGLWRYIHYLGEQG----LNNSRYWLAFWTKVLQPAVTVALVLLAISFIFGPLR 294
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
S + G+ GF+ I ++ + P+ A ++P +
Sbjct: 295 SVTLGQRIFTGVVVGFVFRIIQDLLGPASQVFGFSPLLAVVLPACVC 341
>gi|254282266|ref|ZP_04957234.1| permease YjgP/YjgQ family protein [gamma proteobacterium NOR51-B]
gi|219678469|gb|EED34818.1| permease YjgP/YjgQ family protein [gamma proteobacterium NOR51-B]
Length = 353
Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 124/312 (39%), Gaps = 27/312 (8%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P I + +PF L+ +V L +SELV+ R+ G+SI QL + ++L + +
Sbjct: 56 LPRRIHEFMPFAALIGALVGLGRLAGSSELVVVRSAGVSIGQLAISVMKPALLAAVVGFV 115
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
V + IA S E++ I + + +S + N FI + +
Sbjct: 116 VGDFIAPSSEQLAITQ----RALAQRSESTVSARHGSWNRDGGTFIHVSAV-QRGGVAYG 170
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL--------NI 230
+ + D+ ++ +A+ D L++VV Q ++ TT+ N
Sbjct: 171 LSLFSFDEDKHLVRSLNAERGTYRGDHWLLEEVVLTQ-----LESEKTTVSQYLTWRWNT 225
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
I D + S +++ F + + E F+ + PL + + L+
Sbjct: 226 QITPDLLVLEVVEPESLPVFKLWPWAKFLEQQGLTAT-DIELAFWRKVTQPLAIAGLVLV 284
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS-FGKSGILL---PVAAALIPVIL 346
A S R + IF+G ++ + I + FG + +L PV AA+ P++
Sbjct: 285 AMSFIFGPLREGS----MGARIFAGVIVGVMFRISQDFFGPASVLFGLPPVLAAITPILF 340
Query: 347 TISLSILILLQK 358
I +L ++
Sbjct: 341 CWLAGIWLLNRR 352
>gi|313206715|ref|YP_004045892.1| permease yjgp/yjgq family protein [Riemerella anatipestifer DSM
15868]
gi|312446031|gb|ADQ82386.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer DSM
15868]
gi|315023785|gb|EFT36787.1| hypothetical protein RAYM_00180 [Riemerella anatipestifer RA-YM]
gi|325335845|gb|ADZ12119.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer RA-GD]
Length = 364
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 75/369 (20%), Positives = 167/369 (45%), Gaps = 32/369 (8%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y K +L T ++ L+ I+V V+D IQ + + + G L +I I+
Sbjct: 7 YIIKKFLGTLVFMLVLLSIIVIVVD---IQAKAPNIEKSGYTVGDFLLHFYPFWMIYLIL 63
Query: 68 PFITLVVNIVVFFNLNR---TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
F++++V I V + +R +E+V + G S + P+ + ++ + +F +L++N A
Sbjct: 64 TFMSILVFISVIYFSSRMADNTEIVAIVSSGASFHRFARPYFMVAVGIALF-MLMLNHFA 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQDIFIGA---KKILPENHIWEDF 179
+ + + + ++ +Q K+ + +P + +FIG+ K+ +++++ F
Sbjct: 123 LPWANVKKNELMVFTESQVRQEEKNRSVAISAQMSPTEYVFIGSYHRKEARGSDYLYQKF 182
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVK---LKKVVEYQYGRIPIDK--NSTTLNIPIKM 234
DK NK+IH+ D + +++K + + E + G+ +K N T
Sbjct: 183 -----DKNNKLIHQIRGDY-VSWDEKKQAFSITSFYEKKAGKNETEKLSNGTQTYQSFGY 236
Query: 235 DGFQKFSEQF--ASRSFYEIIKKMSFSNKSNIFHNYRAET---QFYFLIVIPLMLVAMTL 289
+ F ++ +++ E++K F N+ I N T + + +P+ ++ +T+
Sbjct: 237 PPEELFPDELLGENKTTPELVK---FINREKIKGNGNINTYLNELHARTSMPVSIIILTI 293
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+ +++ E R + +A GI F+ +K S IL P A +P +
Sbjct: 294 LGLALASEKKRGGIG-VNLAVGIALAFVFIFSFEALKVVSSSKILTPFVAMWMPNFVFAP 352
Query: 350 LSILILLQK 358
L++L+ ++
Sbjct: 353 LALLLYFRR 361
>gi|149200566|ref|ZP_01877574.1| putative permease, YjgP/YjgQ family protein [Lentisphaera araneosa
HTCC2155]
gi|149136338|gb|EDM24783.1| putative permease, YjgP/YjgQ family protein [Lentisphaera araneosa
HTCC2155]
Length = 329
Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 134/326 (41%), Gaps = 40/326 (12%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSIL------- 111
+P I+ IP +LV +VF ++ +E+ RA GIS+WQ++NP ++ +++
Sbjct: 3 LPKILAYAIPIASLVSVTLVFSRMSAENEITAMRASGISLWQIVNPAILLALVSSACLFY 62
Query: 112 LGIFTV--------------LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN 157
L +F V L+ NP IDL + + G+K++ + +++
Sbjct: 63 LNMFAVPHLEATRKSMMKGELLSNPSTFLRGGTTIDLGKLSVEIGEKKEDGTLKDLRVIE 122
Query: 158 PQQDIFIGAKKILPENH--IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ 215
+ I + ++L ++ I S TI+ + II D + + NDK + K + +
Sbjct: 123 VDKATDIVSNQLLAQSGKIINTTENSFTIEFIDVII--LDNNWEFLKNDKGENKSLSGVK 180
Query: 216 YGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKM-----SFSNKSNIFHNYRA 270
R+P + T +++ S R+ Y IK+M NK R
Sbjct: 181 VTRLPNANTTYTFYTNDELN-----SGNLRKRAKYLNIKEMIARLAVLKNKEQTKTVRRE 235
Query: 271 ETQFYFLIVIPLML----VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
T + + L L +A L+A L SRS + I + + Y I I
Sbjct: 236 HTDLLYNLNKNLALSFSPLAFLLMALPFGLRSSRS-ETSIGLLISLIVMMTYYATILITG 294
Query: 327 SFGKSGILLPVAAALIPVILTISLSI 352
+F K + P +P I+ SL +
Sbjct: 295 AFDKHTAMHPEILVWLPNIIFQSLGL 320
>gi|262277385|ref|ZP_06055178.1| putative permease, YjgP/YjgQ family [alpha proteobacterium HIMB114]
gi|262224488|gb|EEY74947.1| putative permease, YjgP/YjgQ family [alpha proteobacterium HIMB114]
Length = 365
Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 273 QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG 332
+F+ + +P +L AM +++ +++ + + I GI +G ++Y + + GKSG
Sbjct: 278 KFHKYLSLPFLLFAMIVLSTFFTIKMNFTFNNFIYAFLGILTGIIVYFFYDLSIAVGKSG 337
Query: 333 ILLPVAAALIPVILTISLSILILLQKED 360
L + + +PVIL SI IL+ ED
Sbjct: 338 KLPLILSVWMPVILINVFSIYILINNED 365
>gi|37522902|ref|NP_926279.1| hypothetical protein gvip459 [Gloeobacter violaceus PCC 7421]
gi|35213904|dbj|BAC91274.1| ycf84 [Gloeobacter violaceus PCC 7421]
Length = 384
Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 63/335 (18%), Positives = 133/335 (39%), Gaps = 40/335 (11%)
Query: 47 SISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFV 106
S++ A + A R+P +I P L+ ++ + L+ +E V RA G+S+++L+ P +
Sbjct: 59 SVTVAAQVFALRLPSVIVITFPTAMLLATLLAYARLSGDAETVAMRACGMSVYRLVLPAL 118
Query: 107 VGSILLGIFTVLVINPIATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFI 164
+L+ T + + + L+ Q +D D QK +II P+ F+
Sbjct: 119 AVGLLVTGATFMCNELVVPASNAEASRLLFQAIDRDKPDFQKDNII------YPEYG-FV 171
Query: 165 GAKKILPENH--------------IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKK 210
+ P H I + T +D I++ A +Y+++
Sbjct: 172 TPRDGRPTYHTLVRLFYARQFAGGIMRELT--VLDYSQDAINQVITAAAAVYDNRSGSWT 229
Query: 211 VVEYQ-YGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS---------FYEIIKKMSFSN 260
+ + Y P L + + EQF + + I+++ S
Sbjct: 230 LQDGTVYVVAPDGSYRNVLRFKRQQVKLSERPEQFGGGARPEDLPIAQLSDYIRRLELSQ 289
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
+ + ++ IP+ L+ A++ L R++ + + I F Y
Sbjct: 290 QQVRTLQVSLQQKY----AIPVTCFVFALVGATLGLRRVRTSNA-LGLGLSILIIFGYYL 344
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ + ++ G++G++ P A P + T +L +L+L
Sbjct: 345 LMFVAQALGQTGVIAPWLGAWAPNLATGALGVLLL 379
>gi|323697852|ref|ZP_08109764.1| permease YjgP/YjgQ family protein [Desulfovibrio sp. ND132]
gi|323457784|gb|EGB13649.1| permease YjgP/YjgQ family protein [Desulfovibrio desulfuricans
ND132]
Length = 391
Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 131/313 (41%), Gaps = 29/313 (9%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
P + I P T++ + F ++ +ELV +A G+S++++L V+ L +F
Sbjct: 57 TPFFLLLITPIATMLSVFLTFLRMSTDNELVALKASGVSLYRMLPAPVLFCSLCTLFAFF 116
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-QDIFIGAKKILPENHIWE 177
I+ G G+D+ + K S + N + +I A ++ +N E
Sbjct: 117 ----ISFWGLAWGMDMFKTKLYYFAKTHSKFALQPGVFNKEFPNITFYAHQV--DNEKGE 170
Query: 178 -DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI------ 230
F + D A A + ++ + K V + GRI ++ LNI
Sbjct: 171 LKFAFVRDDSIKGTSVVVVAPEAEVVSNPQEAKIHVVFHNGRI-FRQSGDELNILKFRKY 229
Query: 231 PIKMD------GFQKFSEQFASR----SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
IK+D GF F+EQ A +I K S N + +T+FY + +
Sbjct: 230 SIKLDLGKLLTGFN-FAEQKAKDMPFFRLRDIRKDHSLMPHENERFFRKVDTEFYKRLTL 288
Query: 281 PLMLVAMTLIAASVSLEF-SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
PL + L A ++ F Q +++A G+F + YT+ +I S G+SG + P
Sbjct: 289 PLGCFILGLFAIPIASIFRGLRQQYGLLLAMGLF--MVYYTMFSIGVSMGESGTIPPEYG 346
Query: 340 ALIPVILTISLSI 352
P IL I +++
Sbjct: 347 MWAPDILFIFVAL 359
>gi|282860179|ref|ZP_06269254.1| putative membrane protein [Prevotella bivia JCVIHMP010]
gi|282587068|gb|EFB92298.1| putative membrane protein [Prevotella bivia JCVIHMP010]
Length = 633
Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 30/166 (18%)
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+++ Q +P L+ +++ + NL +SEL ++ GIS++Q + +IL+ I +
Sbjct: 62 MLVPQALPLAVLLSSLMTYGNLGESSELTAIKSAGISLFQSFRGLIATTILITILSFYFQ 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN-------PQQDIFIGAKKILPEN 173
N +A +K L+ KQKS P ++I PQ ++++ KK L
Sbjct: 122 NNVAPIAQKHIYQLLISM-----KQKS---PELEIPEGVFYDGIPQTNLYV-EKKDLNTG 172
Query: 174 HIWEDFTSITIDKKNKIIHRKD---ADLAIIYNDKVKLKKVVEYQY 216
H++ N +++R D AII D L+ E ++
Sbjct: 173 HLY-----------NIMVYRMTDSYEDQAIILADSGMLQSTAEKKH 207
>gi|78356992|ref|YP_388441.1| permease [Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
gi|78219397|gb|ABB38746.1| permease, putative [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 359
Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 72/347 (20%), Positives = 149/347 (42%), Gaps = 34/347 (9%)
Query: 11 KYYLKTTLYF-LLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA--ATRVPLIIQQII 67
+Y L+T L+ +L I + L+++ +++ + + +L A ++PLII QI+
Sbjct: 6 RYLLRTNLFLTMLTLTIGTGIYLLSDLFDRLDDFLGAGLGLKVILTYFAVKIPLIISQIL 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ ++ + R ELV +A GIS +L F++ +++ + + G
Sbjct: 66 PAVFLLSAVIQLCVMARDRELVALQAGGISFLRLARFFIIYALIWSAVQLGFSQVLGIYG 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT--SITID 185
E+ + + WK+ ++ D + + + I + + P T +T D
Sbjct: 126 ER---EASRIWKEQVRNREIDEVQLTNLWFTEHGRIIHLETLHPAAQKGSGITVYELTPD 182
Query: 186 KKN--KIIHRKD--ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++I K AD + D + Y+ S ++ +PI+ D + FS
Sbjct: 183 ELSVQRVIRGKSFRADSSGWTLDGCDILIPGSYEVA------TSESIVLPIEQD-VKAFS 235
Query: 242 --------EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + I +++ S SN+ T ++ + LV M L+A +
Sbjct: 236 IVDPRGDPSRLPLWQLQDAIARLTESG-SNV---EALRTAWHMKLSYAFSLVTMALLALA 291
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ + + I V + F+ YT+ T+ S G++GI+ P+ AA
Sbjct: 292 L---ITWRDSIYINVGTSLLLVFVFYTLFTVGGSLGENGIVPPLFAA 335
>gi|258645769|ref|ZP_05733238.1| membrane protein, YjgP/YjgQ family [Dialister invisus DSM 15470]
gi|260403140|gb|EEW96687.1| membrane protein, YjgP/YjgQ family [Dialister invisus DSM 15470]
Length = 361
Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 59/311 (18%), Positives = 125/311 (40%), Gaps = 26/311 (8%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P II P L+ ++ L+ +SEL++ R G S +L+ P + + L+ + V
Sbjct: 58 LPRIIVYTFPMAVLLGALMATSRLSGSSELIVMRTSGQSFSRLVMPIFILTFLISLCAVA 117
Query: 119 VINPIATSGEKIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ + +I + K N + +D + + N + + A++ PEN E
Sbjct: 118 FNEYVVPWTNRKYEQVINIEIKRNLNPGVTDHVILRDVQNGKIAHLLYARRYNPENKKLE 177
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-------------IPIDKN 224
+ T I + +I ++A A+ + K ++ Y G IP ++
Sbjct: 178 NIT-IQEFQNEAVIRVENAPNAVWKDGKWFMENGTIYDLGEDGISRTMRFKNQFIPYGQS 236
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
T+ K E F +R YE + + + I + +P
Sbjct: 237 PETIQKEHKDYDEMTIRELFTARKAYEAAHEDATAIVMEIHRRFS----------LPFAS 286
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
L+ A + ++ RS+ I + F+ Y ++T +++ GK ++ VAA +P
Sbjct: 287 FVFGLVGAPLGVQRERSSSS-IGFGLSVVIIFVYYAVMTFLEALGKGHVISAVAAVWLPN 345
Query: 345 ILTISLSILIL 355
++ + ++ ++
Sbjct: 346 LIALICAVYLI 356
>gi|257095655|ref|YP_003169296.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257048179|gb|ACV37367.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 357
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 63/324 (19%), Positives = 131/324 (40%), Gaps = 24/324 (7%)
Query: 33 LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
L EI+N +G+ Y + R+P + +++P L+ + L R SE+ + R
Sbjct: 33 LGEIRN-VGQ-GGYQLHHAFAFVLLRIPGRVYELMPIAVLIGTLYALSTLARHSEITVLR 90
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN--GDKQKSDII 150
G+S LL + +L + T L+ +A E+ L + + G +S +
Sbjct: 91 VSGLSSGGLLTVLFQVAGVLAVLTFLIGEYVAPPSERAAFQLRSKERTGMVGQDLRSGL- 149
Query: 151 PWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKD-ADLAIIYNDKVKLK 209
W++ + FI + +LP+ + D+ K+ + A+ + D +L
Sbjct: 150 -WVK----DERSFINVRIVLPDTRL-RGIRIFEFDEDAKLRSMTEAAEGEYVVPDSWRLT 203
Query: 210 KVVE--YQYGR-----IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS 262
VV+ + GR +P + + LN P + ++ + R K ++ ++++
Sbjct: 204 NVVQTVLEGGRAEVRSVPDMQWRSALN-PDILAVLLVSPDRMSLRHLSAYTKHLADNHQT 262
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
R + F+ ++ PL + M +A SR + + G+ G + + +
Sbjct: 263 ----TNRYDIAFWKKVIYPLAGLVMVALALPFGGAHSRVEGVGLKIFVGVMIGTLFHMLN 318
Query: 323 TIMKSFGKSGILLPVAAALIPVIL 346
+ + G P+ +A P IL
Sbjct: 319 GLFSNLGAINHWSPLLSAATPSIL 342
>gi|296272453|ref|YP_003655084.1| permease YjgP/YjgQ family protein [Arcobacter nitrofigilis DSM
7299]
gi|296096627|gb|ADG92577.1| permease YjgP/YjgQ family protein [Arcobacter nitrofigilis DSM
7299]
Length = 356
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 125/295 (42%), Gaps = 36/295 (12%)
Query: 84 RTSELVISRAIGISIWQLLNPFVVGSILLGIFTV-LVINPIATSGEKIGIDLIQQWKDNG 142
+T+E+V S ++G+ Q+ P V SI+L + + + P+A S E L + +
Sbjct: 79 KTNEMVASFSLGVGNRQIFMPVVNVSIILIVLLIGFQMTPLAYSYEYKEKILKNTYFTSS 138
Query: 143 DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED---FTSITIDKKNKIIHRKDADLA 199
KSDI D F+ KK+ P ED + + D + I+ +K A
Sbjct: 139 ---KSDIFV------KYNDYFVYFKKLYPLQKYAEDIHIYKVVDDDIEEGIVAKK----A 185
Query: 200 IIYNDK--------VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ-----KFSEQFAS 246
N++ K KV+++ +I I ++GF+ E +S
Sbjct: 186 YFQNNRWYVLDARITKKPKVIDWNNSKIEIHHEKFLYT----LEGFKPKILDSVYESTSS 241
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
S + I ++ N + + + Y+ IV PL V + ++ S + SR
Sbjct: 242 FSILDAITALTLLNDQEV-NTSKIRASLYYEIVAPLYFVPLIILIFSYTSFNSRFFNIGK 300
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++ I + +++ + ++ F G++ P + L+P+ L ++ IL++K+ G
Sbjct: 301 FTSFSIAATLVIWGVFFMLHKFSSGGVINPEISILLPIFLWYIIT-YILIKKQIG 354
>gi|116624897|ref|YP_827053.1| permease YjgP/YjgQ family protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116228059|gb|ABJ86768.1| permease YjgP/YjgQ family protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 777
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL--GIFT 116
P +I Q++P LV + F +++ +E+ +A G+S+++L P +VGS+LL G+F
Sbjct: 469 PQLIYQMLPVSILVAVLAAFGVMSKQNEITAFKACGVSLFRLAAPILVGSVLLSGGLFA 527
>gi|119357818|ref|YP_912462.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
266]
gi|119355167|gb|ABL66038.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
266]
Length = 358
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 128/304 (42%), Gaps = 27/304 (8%)
Query: 57 TRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
+ +P + P L+ I+V L+ SEL ++ GIS+ QLL PFV+G + I +
Sbjct: 55 SSIPSTLMVTSPVAALLSAILVAGKLSAMSELSAIKSAGISLKQLLKPFVLGGTI--ICS 112
Query: 117 VLVINPI----ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN---PQQDIFIGAKKI 169
+ ++N A + +KI + + + Q + + ++ N ++ I K
Sbjct: 113 INMLNSCWLGPAAAADKIAFERT-SFNRTQNLQANSNMHILESGNRIVSIGELLINQSKG 171
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK---LKKVVEYQYG----RIPID 222
L HI SI ++ R DA +I++ V LK+ + + ++
Sbjct: 172 L---HI-----SIEQFNGTRLSTRMDAP-EMIFDQNVHKWVLKETSSRSFTGNNEQYHLN 222
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
+ TL + + + +K + Q + E + +K+ RA+ + + I +P
Sbjct: 223 PGNDTLGMAMSLKSLRKLNVQPDEMNILEHYRYTREKDKAGFSGLDRAKVKLHAKIALPF 282
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ LI +S R + + +F GF+ + + + G +G+L P AA +
Sbjct: 283 ASLISILIGVPLSTIRKRGGKAAEF-SITLFIGFLYLGLQKTIATIGYTGLLEPWIAAWL 341
Query: 343 PVIL 346
P +L
Sbjct: 342 PNML 345
>gi|67922983|ref|ZP_00516478.1| permease YjgP/YjgQ [Crocosphaera watsonii WH 8501]
gi|67855202|gb|EAM50466.1| permease YjgP/YjgQ [Crocosphaera watsonii WH 8501]
Length = 394
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 60/312 (19%), Positives = 130/312 (41%), Gaps = 38/312 (12%)
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + P L+ ++ + L+ SE++ R++G+SI++L+ P ++ ++ +V
Sbjct: 78 PGFVSLAFPMAMLLAALMAYTRLSSDSEIIALRSLGVSIYRLIIPVILFGFMVTGCAFIV 137
Query: 120 ---INPIATSGEKIGIDLIQQWKDNGDKQKSDIIP---WMQISNPQQDIFIGAKKILPEN 173
I P AT + ++ + K+++ + P +Q N Q+ + ++ E
Sbjct: 138 NDWIAPAATHEAAVTLERAVNQERPDFKERNIVYPEYKTIQEENGQEATVL-SRLFYAEE 196
Query: 174 HIWEDFTSITI-----DKKNKIIHRKDADLAI------IYNDKVKL-------KKVVEYQ 215
+ E +TI + N+I+ + A I +N + L + +V +Q
Sbjct: 197 YNGEQMQGLTILDRTQEGVNQIVTSESATWNISSNTWDFFNGTIYLIAPDGSYRNIVRFQ 256
Query: 216 YGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY 275
+ ++ + + L + Q F+E + + E +K M S + Q
Sbjct: 257 HQQLALPRAPLDL-----ANRRQNFTEMTIAET-KEYLKAMQLSGNEKRIRKVQVRLQEK 310
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG--FMLYTIITIMKSFGKSGI 333
+ +P + + L+ A++ + +N+ ++G+ G F Y + + S G GI
Sbjct: 311 Y--ALPFVCLIFGLVGAAIGVRPQNTNKS---TSFGVCVGLIFGYYLLAFMSTSLGIWGI 365
Query: 334 LLPVAAALIPVI 345
L P A +P I
Sbjct: 366 LTPFLGAWLPNI 377
>gi|88810479|ref|ZP_01125736.1| putative permease [Nitrococcus mobilis Nb-231]
gi|88792109|gb|EAR23219.1| putative permease [Nitrococcus mobilis Nb-231]
Length = 358
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P Q PF TL+ +++ L SELV+ R G+S + P V+ + L + + V
Sbjct: 58 PYSAYQAFPFATLIGSLIGLGGLAARSELVVMRGTGMSALTIARPLVMAGLSLALLAMGV 117
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+A +++ +L + + W + D ++ A+++ PE + ED
Sbjct: 118 GEWLAPRTDRLATELQTRAVGGQLSAGGESGFWAR----DGDRYVHARQV-PEADVLEDL 172
>gi|317969817|ref|ZP_07971207.1| permease [Synechococcus sp. CB0205]
Length = 400
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 51 GAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI 110
G VLA R+P + P TL+ ++ F L+ +SEL R+IG+ W+++ P +V +
Sbjct: 75 GKVLA-LRMPGFLVLSFPMATLMATLLAFSRLSGSSELTALRSIGVKTWRMVVPALVLAA 133
Query: 111 LLGIFT 116
L+ + T
Sbjct: 134 LMTLLT 139
>gi|304413751|ref|ZP_07395195.1| inner membrane component LptG of LptABCFG lipopolysaccharide
transporter [Candidatus Regiella insecticola LSR1]
gi|304283842|gb|EFL92236.1| inner membrane component LptG of LptABCFG lipopolysaccharide
transporter [Candidatus Regiella insecticola LSR1]
Length = 358
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 75/334 (22%), Positives = 131/334 (39%), Gaps = 29/334 (8%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L T L L + L +I E ++GE +YS+ + VP
Sbjct: 3 MFGVLDRYIGRNILHTILMTLFMLVSLSGIIKFIEQLRKLGE-GSYSVLGAGIYTLLSVP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ + L SEL++ +A G + Q+ + + +I L + T+++
Sbjct: 62 KDIEIFFPMAALLGVLFGLGTLASRSELIVMQASGFTRTQIASAVMKTAIPLVLLTMVIG 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI-GAKKILPENHIWEDF 179
+A E+I D ++ +I I Q ++ + L NHI D
Sbjct: 122 EWVAPLSERIASD-----------YRTKMIFGGAILTTQSGLWARDGENFLYINHILNDN 170
Query: 180 TS-----ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN----- 229
T ID++N+++ + A A ++ +L +V E S TL
Sbjct: 171 TLSGVNIYHIDQENRLLSVRYAATATFKDNVWQLSQVDESDLSDAKKINGSKTLTGEWKI 230
Query: 230 --IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
P K+ + + I+ + K N + R + + I PL + M
Sbjct: 231 NLTPDKLGIVSVDPDSLPISGLRDYIQYL----KQNKQESLRYQLIMWNKIFSPLSVAVM 286
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTI 321
L+A S R+ + V GI GF+ Y +
Sbjct: 287 MLVALSFIFGPLRTVTMGVRVMVGIAVGFLFYVL 320
>gi|88703587|ref|ZP_01101303.1| Predicted permease YjgP/YjgQ family protein [Congregibacter
litoralis KT71]
gi|88702301|gb|EAQ99404.1| Predicted permease YjgP/YjgQ family protein [Congregibacter
litoralis KT71]
Length = 352
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P + + IPF L+ ++ L TSELV+ RA GIS +L + ++++ +F L
Sbjct: 56 MPRRVYEFIPFAALIGALIGLGQLASTSELVVMRAAGISNGRLAWMVLKQALVIAVFGFL 115
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ IA E+ + G + ++ W + +F + I P+N ++
Sbjct: 116 LGEYIAPKAEQQAQSGRAIARYAGRQVDTEQGIWRRDGA----VFFHVQAIAPDNEVF-G 170
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST 226
T+ ++ + AD + +L+ V ++ R + K S
Sbjct: 171 VTAYEFEEDGWMQRALFADSGRYDGEGWRLRDVQSSEFSRDRVRKASA 218
>gi|296532233|ref|ZP_06894980.1| permease YjgP/YjgQ [Roseomonas cervicalis ATCC 49957]
gi|296267440|gb|EFH13318.1| permease YjgP/YjgQ [Roseomonas cervicalis ATCC 49957]
Length = 381
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
+P I+P T VV + + LN ELV+ RA G+S WQL P
Sbjct: 57 LPSFFAVILPITTFVVTLFSYVRLNGDRELVVMRAAGLSDWQLSRP 102
>gi|253991456|ref|YP_003042812.1| hypothetical protein PAU_03983 [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782906|emb|CAQ86071.1| similar to putative membrane protein yjgq of escherichia coli
[Photorhabdus asymbiotica]
Length = 358
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 154/368 (41%), Gaps = 19/368 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L+T L L + L +I + ++G+ +IS G + A VP
Sbjct: 1 MFGVLDRYIGRTILQTILMTLFMLVSLSGIIKFVDQLRKVGQGEYTTISAG-LYALLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IQ P L+ ++ L SELV+ +A G + Q+ + +I L I T+++
Sbjct: 60 KDIQIFFPMAALLGALLGLGALATRSELVVMQASGFTRMQVAGSVMKTAIPLVILTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + FI ++++ + I +
Sbjct: 120 EWVAPQGEQMARNYRAQKMFGGSLVSTTKGMWAKDGAD----FIYIQRVMSDTEI-KGVN 174
Query: 181 SITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQY-------GRIPIDKNSTTLNIP 231
+ K++ K AD A+ ND KL +V E G I + T P
Sbjct: 175 IYHFNDDKKLLSVKYADSAVYDENNDLWKLSQVEESDLTDSKKITGSQRISADWKTRLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
++ E + Y+ I + S + + R + + I PL + M L+A
Sbjct: 235 EQLGVVALDPEALSISGLYQYISYLKQSEQ----ESGRYQLNMWKKIFAPLSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S R+ + + GI GF+ Y + I + V AAL+P +L ++LS
Sbjct: 291 LSFIFGPLRTVPMGVRIITGITLGFLFYLLNEIFGPLSLVYSMPAVLAALLPSLLFLTLS 350
Query: 352 ILILLQKE 359
I +LL+++
Sbjct: 351 IYLLLKRQ 358
>gi|90408709|ref|ZP_01216858.1| hypothetical protein PCNPT3_03815 [Psychromonas sp. CNPT3]
gi|90310191|gb|EAS38327.1| hypothetical protein PCNPT3_03815 [Psychromonas sp. CNPT3]
Length = 354
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 83/392 (21%), Positives = 147/392 (37%), Gaps = 74/392 (18%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
GIL RY K T L + L +I E +G+ +Y + ++P+
Sbjct: 2 GILDRYIGKTVFAATFLTLFVLLGLSSIIKFVEQMRSVGQ-GSYDVLAAGYFVLLKMPVE 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN-------PFVVGSILLGIF 115
+ P L+ ++ +L +SELV+ +A G+S +++ P V +LL F
Sbjct: 61 MTVFFPMAALIGALIGLGSLASSSELVVMQAAGMSKFRIAGAVLKTAVPMVFAVMLLAEF 120
Query: 116 TVLVINP-------IATSGEKIGIDLIQQWKDNGD--------KQKSDIIP---WMQISN 157
V + +A SG+ + W + D +S++ + +
Sbjct: 121 VAPVTDKEAYSMRDLARSGQSSVSNKYGVWVKDADAFISIGRMNSQSELFNVRFYFFNES 180
Query: 158 PQQDIFIGAKKILPENHIW--EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ 215
Q D + AKK+ W ED T + + KD+D+ +Q
Sbjct: 181 MQLDHAVLAKKVSYRGGYWLLEDSTWTKFESDRTNVEHKDSDV---------------WQ 225
Query: 216 YGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY 275
P K L+ P KM + R Y I + N + + Y
Sbjct: 226 TDLTP-KKLDVILSDPSKM----------SMRDIYGYITYL---------ENNQQDANRY 265
Query: 276 FLI-----VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
LI V+P +V M L++ S R+ + GI SGF + + FG
Sbjct: 266 LLILWRKAVLPFTVVVMMLLSVSFIFGGLRTVTMGTRLILGIASGFAFHVSGEL---FGP 322
Query: 331 SGI---LLPVAAALIPVILTISLSILILLQKE 359
+ + L P+ AL+P +L + +++ +L ++
Sbjct: 323 ASLVFGLSPLLGALLPSMLVLCIAMYLLRRQS 354
>gi|319954060|ref|YP_004165327.1| permease yjgp/yjgq family protein [Cellulophaga algicola DSM 14237]
gi|319422720|gb|ADV49829.1| permease YjgP/YjgQ family protein [Cellulophaga algicola DSM 14237]
Length = 359
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 169/392 (43%), Gaps = 75/392 (19%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFV-----IDLNEIQNQMGE-----------LPNYS 47
IL +Y K YL T M+L+F+ + L+E N+M + L N+S
Sbjct: 3 ILDKYILKRYLVT-----FSVMLLLFIPIGIMVHLSEQYNKMQDNEAPLNEILMYLGNFS 57
Query: 48 ISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFN--LNRTSELVISRAIGISIWQLLNPF 105
I G++L +P+ + F++ V+FF L +E+V + GIS + L P+
Sbjct: 58 IYIGSML----LPIFL-----FLS-----VIFFTSKLAGNTEIVAMLSSGISYGRFLRPY 103
Query: 106 VVGSILLGIFTVLV---INPIATSG-EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD 161
++G++++ F +L+ I P A+ G + +++ K D+ +I + ++
Sbjct: 104 LMGAVIVAAFMLLMGMFIVPNASKGFNEFKFKYLKKGKQ--DRVTENIFNQLNAND---- 157
Query: 162 IFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA------DLAIIYNDKVKLKKVVEYQ 215
FI + P I +F+ +K N + ++ A + IY +K+ ++
Sbjct: 158 -FIYVSRFDPTRDIGYNFSMEHFNKDNVLEYKLSAANIRWIEADSIYRLTSYVKRTLK-- 214
Query: 216 YGRIPIDKNSTTLN--IPIKMDGFQKFSEQFASRSFYEI------IKKMSFSN-KSNIFH 266
G I + L+ P K++ S +++ +E+ K+ SN + I
Sbjct: 215 -GDTEILETKRRLDTVFPFKINDLTPVSYVAETKNLFELNEFIANEKRKGASNINTYILV 273
Query: 267 NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
Y+ T +P+ +TLIA +VS + R + +A+GI F+ +
Sbjct: 274 KYKRWT-------MPITAFILTLIAVAVSSQKRRGGMG-VNLAFGILVAFVYIFFDRVFG 325
Query: 327 SFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + P+ A ++P +L L+ LLQK
Sbjct: 326 TLAEQSGFSPLLAVIVPNVLFGFLA-FYLLQK 356
>gi|307566095|ref|ZP_07628553.1| putative membrane protein [Prevotella amnii CRIS 21A-A]
gi|307345283|gb|EFN90662.1| putative membrane protein [Prevotella amnii CRIS 21A-A]
Length = 633
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+++ Q +P L+ +++ + NL +SEL +A GIS++Q + +IL+ + +
Sbjct: 62 MMVPQALPLAVLLSSLMTYGNLGESSELTAIKAAGISLFQSFRGLIGITILITLLSFYFQ 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN-------PQQDIFIGAKKILPEN 173
N IA +K LI KQKS P ++I PQ ++++ KK L
Sbjct: 122 NNIAPVAQKHLYQLIISM-----KQKS---PELEIPEGVFYSGIPQTNLYV-EKKNLKTG 172
Query: 174 HIW 176
H++
Sbjct: 173 HLY 175
>gi|77165378|ref|YP_343903.1| permease YjgP/YjgQ [Nitrosococcus oceani ATCC 19707]
gi|254434004|ref|ZP_05047512.1| putative permease, YjgP/YjgQ family [Nitrosococcus oceani AFC27]
gi|76883692|gb|ABA58373.1| permease YjgP/YjgQ [Nitrosococcus oceani ATCC 19707]
gi|207090337|gb|EDZ67608.1| putative permease, YjgP/YjgQ family [Nitrosococcus oceani AFC27]
Length = 354
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 150/375 (40%), Gaps = 50/375 (13%)
Query: 4 ILWRYFFKYYLKTTLY--FLLGAM--ILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
IL RY K + TL F+L A+ L FV +L ++ GE +Y + +
Sbjct: 3 ILDRYIAKAVISYTLLVLFILIALYTFLQFVTELEDV----GE-GDYGVMGALRYTTYSI 57
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL-LNPFVVGSILLGIFTVL 118
P I ++P L+ +++ L SELV RA G S+ ++ L+ G I + I TVL
Sbjct: 58 PQHIYDLLPVAALLGSVLGLGYLAGQSELVAMRAAGFSVGRITLSALATGMIFV-IVTVL 116
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ +A ++ L K + W + N F ++LP N +E
Sbjct: 117 MGEVVAPPAQQAANKLRSLAKTGHLSEDGGQGFWSRNGNN----FNHVGRVLP-NGQYEY 171
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI-------- 230
D + ++ A AI + D L V + R+ K TT +
Sbjct: 172 IEIFEFDDQRRLRIVTQAARAIYHKDGWHLYDVTQ----RLISTKGITTRRLDEALWESG 227
Query: 231 --PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP-----LM 283
P +D +Q ++ Y I + S ++ YR F+ IV P +M
Sbjct: 228 LNPEMLDVVMVDPQQLSAWGLYRYIGYLQKSKQAA--EQYR--QAFWSKIVAPFSTLIMM 283
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI---LLPVAAA 340
+A+ I + S S RI+V + GF L+ + F + G+ L P A
Sbjct: 284 FLAIPFIFGPLR---SVSVGQRILVGALVGIGFFLFN-----RLFNQLGLVFDLPPWLGA 335
Query: 341 LIPVILTISLSILIL 355
P +L ++L +++L
Sbjct: 336 AFPSLLCLALGVVML 350
>gi|330824939|ref|YP_004388242.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans
K601]
gi|329310311|gb|AEB84726.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans
K601]
Length = 366
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 3/146 (2%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
Y +S + A +P + +++P L+ I V L ++SE I R G+ W+ L+
Sbjct: 43 GYRMSHALLFVALSLPQHLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALST 102
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
+ T V + +A E+ + Q G W++ +
Sbjct: 103 LLALGCAFVALTFAVGDYLAPISERAAALVRAQ--QLGQISTGATGAWLKERQGDHSFAV 160
Query: 165 GAKKILPENHIWEDFTSITIDKKNKI 190
+ + P+ H+ D D + ++
Sbjct: 161 NVRALTPDGHM-RDVRVFEFDARGRV 185
>gi|319762859|ref|YP_004126796.1| permease yjgp/yjgq family protein [Alicycliphilus denitrificans BC]
gi|317117420|gb|ADU99908.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans BC]
Length = 366
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 3/146 (2%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
Y +S + A +P + +++P L+ I V L ++SE I R G+ W+ L+
Sbjct: 43 GYRMSHALLFVALSLPQHLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALST 102
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
+ T V + +A E+ + Q G W++ +
Sbjct: 103 LLTLGCAFVALTFAVGDYLAPISERAAALVRAQ--QLGQISTGATGAWLKERQGDHSFAV 160
Query: 165 GAKKILPENHIWEDFTSITIDKKNKI 190
+ + P+ H+ D D + ++
Sbjct: 161 NVRALTPDGHM-RDVRVFEFDARGRV 185
>gi|86141356|ref|ZP_01059902.1| putative membrane protein [Leeuwenhoekiella blandensis MED217]
gi|85831915|gb|EAQ50370.1| putative membrane protein [Leeuwenhoekiella blandensis MED217]
Length = 358
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 56/285 (19%), Positives = 118/285 (41%), Gaps = 22/285 (7%)
Query: 82 LNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN 141
L +E++ + G+S ++ L P+++G+ ++ + ++ +A + + + ++ N
Sbjct: 80 LANNTEVIAFLSSGVSFYRFLRPYLIGATIVCVGAYILGTYLAPAASQGFNEFTYEYLKN 139
Query: 142 GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII 201
G + + QI++ + +I + P + + ++FT + N + K +I+
Sbjct: 140 GKAARETRNVYRQIND---NDYIYVSRFTPSSKMGQNFTLEHFE--NNTLQYKIQARSIV 194
Query: 202 YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF-----------SEQFASRSFY 250
Y + L ++ Y+ RI + ++ P K+D F +E +
Sbjct: 195 YRPEDTLYRLNGYK-KRIVGKEGDILISEP-KLDTLFSFDLEDLTPLEYIAETLTTPRLR 252
Query: 251 EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY 310
E I K S I R E Y +P+ +T+IA +VS R I +A
Sbjct: 253 EFIDKERARGSSAI---NRYEVVLYKRYSLPVSAYILTIIAVAVS-SMKRRGGMGINLAL 308
Query: 311 GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
GI F+ + + + P+ A +P +L L+I +L
Sbjct: 309 GISLAFIFIFFDKVFGTISEQSDFSPMVAVWLPNVLFGILAIYLL 353
>gi|119476402|ref|ZP_01616753.1| hypothetical protein GP2143_08124 [marine gamma proteobacterium
HTCC2143]
gi|119450266|gb|EAW31501.1| hypothetical protein GP2143_08124 [marine gamma proteobacterium
HTCC2143]
Length = 353
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 20/186 (10%)
Query: 36 IQNQMGELP-NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAI 94
I ++MG L NY VP + ++PF LV + L SELV+ R+
Sbjct: 32 IVDEMGYLSGNYDFVAALRFVIYSVPATMFDLLPFAALVGCLAGLGTLASGSELVVMRSA 91
Query: 95 GIS----IWQLLNPFVV---GSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
G+S +W ++ P +V +L+ + V IA S I + K+
Sbjct: 92 GVSTLRIVWMVMRPIIVVMIAGMLVSEYVAPVTESIAKSERAIAL-----------KKSQ 140
Query: 148 DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+I+ + + + + F+ + P N I T D+++K A AI + +
Sbjct: 141 NIVSREGLWHREANRFMHFNAVQP-NGILYGVTMYQFDEQHKPQSTLYAQRAIYQSGEWL 199
Query: 208 LKKVVE 213
L+ VVE
Sbjct: 200 LEDVVE 205
>gi|318041350|ref|ZP_07973306.1| permease [Synechococcus sp. CB0101]
Length = 388
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
R+P + P TL+ ++ F L+ +SEL R+IG+ W+++ P +V + L+ + T
Sbjct: 67 RLPGFLVLSFPMATLMATLLAFSRLSSSSELTALRSIGVPTWRMVVPALVVAALMTVLT 125
>gi|282892298|ref|ZP_06300694.1| hypothetical protein pah_c221o032 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281497889|gb|EFB40240.1| hypothetical protein pah_c221o032 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 361
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 144/363 (39%), Gaps = 55/363 (15%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI--IQ 64
RYFF+ +K F+ L +ID + Q +S + + LI +
Sbjct: 13 RYFFREVVKLFCVFIGSFYGLYVLIDFSSHTTQFSTHFQWS----EIFSYYFYELIRRLD 68
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN--- 121
I+PF ++ I +L+ +ELV A G+S+ LL PF++ + FTVL+
Sbjct: 69 VILPFALMLATIKTLCSLSTNNELVALMASGMSLKSLLRPFIIIGLF---FTVLMYGNAE 125
Query: 122 ---PIATSGEKIGIDLIQQWKDNGDKQ----------KSDIIPWMQISNPQQDIFIGAKK 168
P A G K D K+ + + ++ I+ Q + ++ F +
Sbjct: 126 FLLPKAQKGLKQIHDRHTSLKNKLENRGFVQHIILDDQTQIL--FQYYDEERQFFFDSYW 183
Query: 169 ILPENHIWE---DFTSITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKN 224
I + I+ F + + + H L ND+ V+ VE ++ +I ++
Sbjct: 184 IKSADDIFRIKYLFPHLEVPLGRYVHH-----LTRNQNDELVESASFVEKEFPQIYFNQK 238
Query: 225 --STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE--TQFYFLIVI 280
TL++P +S ++++++ +N+ I H A+ + FY + +
Sbjct: 239 KLQETLSLP-------------EEQSLTDLVQQLPHNNR--ISHEKEAQVVSHFYHKMAL 283
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
P + + + A + FSR +I A IF Y + K +L P+ A
Sbjct: 284 PWLCLFAVIAPAPFCVRFSRGLPVFMIYACSIFGLITFYLTMDAALILAKRQVLDPIWAI 343
Query: 341 LIP 343
+P
Sbjct: 344 WMP 346
>gi|302879721|ref|YP_003848285.1| permease YjgP/YjgQ family protein [Gallionella capsiferriformans
ES-2]
gi|302582510|gb|ADL56521.1| permease YjgP/YjgQ family protein [Gallionella capsiferriformans
ES-2]
Length = 358
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 77/366 (21%), Positives = 145/366 (39%), Gaps = 33/366 (9%)
Query: 13 YLKTTLY----FLLGAMILVFVIDLNEIQNQMGELP--NYSISRGAVLAATRVPLIIQQI 66
YL +Y + A+I++F L+ I Q+G + YS+ + +P I ++
Sbjct: 7 YLAREIYASIALVFAALIMLFAF-LDFI-GQLGTMGYGQYSLGYVVLFVLLTIPGHIYEL 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P L+ IV + SEL I RA G S Q+L ++ + + + + IA
Sbjct: 65 FPVAVLIGTIVALVQMAARSELTIYRASGASTGQMLGALSKIAVPMILLSFICGELIAPP 124
Query: 127 GEKIGIDL-IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
E++ L ++ Q W++ F+ + ++P+ + D T D
Sbjct: 125 SERLAQKLRLKALNTQVSLQAFRSGVWVK----DDASFVNVRSVMPDTSL-SDIDIYTFD 179
Query: 186 KK---NKIIHRKDADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNSTTLNIPIKMD 235
K N +I K A + + +L V+E + +P+ + + L P +
Sbjct: 180 KSFHMNSVIRAKRA--SYLEPGVWQLHDVLETSFAARGVSTKSMPVREWQSALT-PGILS 236
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
EQ ++ Y+ + K N + R E + +V P L+ M ++A +
Sbjct: 237 VMLVVPEQMSALDLYKYASHL----KENKQQSARYEIAMWNKLVYPFALLVMMVLALPFA 292
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV--AAALIPVILTISLSIL 353
R+ I+V GI G + + ++ S G P+ A A+ V L I +L
Sbjct: 293 SYQRRAGGVSILVFMGIVLGLVFHFAGRLVGSLGSLNDWQPLFSATAMTGVFLLIGAFML 352
Query: 354 ILLQKE 359
+++
Sbjct: 353 WRVERR 358
>gi|227114630|ref|ZP_03828286.1| putative permease [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
gi|227327172|ref|ZP_03831196.1| putative permease [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 358
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 83/383 (21%), Positives = 158/383 (41%), Gaps = 49/383 (12%)
Query: 1 MPGILWRYFFKY---YLKTTLYFLLG-AMILVFVIDLNEIQNQMGELPNYSISRGAVLAA 56
M G+L RY K + TTL+ L+ + I+ FV L ++ GE YS +
Sbjct: 1 MFGVLDRYIGKTIFTTIMTTLFMLVSLSGIIKFVDQLRKVGQ--GE---YSALGAGLYTL 55
Query: 57 TRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
VP I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T
Sbjct: 56 LSVPKDIEIFFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLT 115
Query: 117 VLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
+ + ++ GE++ + Q G + W + N FI +++ +
Sbjct: 116 MAIGEWVSPQGEQMARNYRSQMISGGSMISTQGGLWAKDGND----FIYIERVTGD---- 167
Query: 177 EDFTSITI---DKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIP 231
++ + + I D KNK++ + A A +D+ KL +V E + L+
Sbjct: 168 KELSGVNIYHFDDKNKLLSVRYAASAEFEDDRNVWKLSQVDE------------SDLSDG 215
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKS---NIFHNY------------RAETQFYF 276
++ G Q FS ++ + + + ++ + HNY R + +
Sbjct: 216 KQIGGSQTFSGEWKTNLTPDKLGVVALEPDALSIRGLHNYAKYLKQSGQESNRYQLNMWS 275
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
I P+ + M L+A S RS + GI GF+ Y + I + + P
Sbjct: 276 KIFAPVSVAVMMLMAVSFIFGPLRSVSAGSRIVIGISFGFLFYLLNEIFRPLSLVYGIPP 335
Query: 337 VAAALIPVILTISLSILILLQKE 359
+ A++P + + +S+ +LL++
Sbjct: 336 ILGAILPSSVFLFISVALLLKRR 358
>gi|326796830|ref|YP_004314650.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
gi|326547594|gb|ADZ92814.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
Length = 353
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 63/313 (20%), Positives = 133/313 (42%), Gaps = 23/313 (7%)
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL----LNPFVVGSIL 111
A R P+ + IP +L+ ++ L TSEL + RA G+ IW++ P ++ S L
Sbjct: 53 AYRAPIKFAEYIPVASLIGTLIGLGALASTSELTVIRATGVPIWRIGFAACKPILLIS-L 111
Query: 112 LGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP 171
+G+ ++P AT DLI++ + + + + + + I + ++I A
Sbjct: 112 IGVGISEYVSPYATQQA----DLIERLRGQSEGRFA-LTGGVWIKSDGNFVYINAAD--- 163
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY--GRIPID-KNSTTL 228
+ D T + + +K + +++ +L++V E + RI K +
Sbjct: 164 REGVLYDIQIFTPNGQALEKIQKAKFARHLSDNQWRLEQVTETHFLGDRIETGYKETVPW 223
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+K S++ + S E+ + S+ + + +F+ ++P A+
Sbjct: 224 TASLKPSHLFLASQEPEALSLSELHQYQSYLTGQELNAGLY-QLEFWTKSLMPFACFALV 282
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL---PVAAALIPVI 345
++A S RS+ + G+ G M + + FGK + L P+ IP+
Sbjct: 283 IVALSSVFGPLRSSTMGGRIFSGVLIGIMFQNGLNL---FGKMSLALSFSPLIGVAIPIA 339
Query: 346 LTISLSILILLQK 358
L ++ +L++ +K
Sbjct: 340 LCFAIGLLLMSRK 352
>gi|312142810|ref|YP_003994256.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
gi|311903461|gb|ADQ13902.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
Length = 366
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 58/297 (19%), Positives = 111/297 (37%), Gaps = 24/297 (8%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P II P L+ I+ + L+ SE+ RA GISI ++ P ++ ++ T+
Sbjct: 58 LPEIIILTFPMAALLGTIMAYNRLSGDSEITAMRAGGISIMAIVLPALIMGLVTSGITIA 117
Query: 119 VINPIATSGEKIGIDLIQQWKDNG---DKQKSDIIPWMQISNPQQDIFIGAKKILPEN-- 173
+ I +I Q+K D Q + + + D + AK EN
Sbjct: 118 ITEFIVPGANYQAEQIIHQFKHGERRPDTQYDLFLTPLDSRTSRPDYMLYAKSFNAENGR 177
Query: 174 ------HIWEDFTSITIDKKNKIIHRKDA----DLAIIYNDKVKLKKVVEYQYGRIPIDK 223
+ED ++ + + + +D + + + D+ +E+ R D
Sbjct: 178 MTDVVLQSFEDGRPRSVLEAEEALWLRDGWSFFNGTVYFLDREDRSPSLEFSQYRSREDI 237
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+S P + K ++ R E I + ++ Y +F+ +P+
Sbjct: 238 HS-----PAQAGKLGKDIDEMNIRELNEHIALLEQQGRA----AYEERVEFHHRFSVPMA 288
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
L+AA + ++ RS I F+ Y ++TI + G G + P A
Sbjct: 289 SFIFALLAAPLGIKPQRSAGSATGFGISIIIIFIYYVLMTIGDALGSQGTIEPWLGA 345
>gi|53803847|ref|YP_114531.1| hypothetical protein MCA2101 [Methylococcus capsulatus str. Bath]
gi|53757608|gb|AAU91899.1| putative membrane protein [Methylococcus capsulatus str. Bath]
Length = 356
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 116/273 (42%), Gaps = 27/273 (9%)
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS----IWQLLNPFVVGSILLGIF 115
P + ++IP L+ +VV N+ ELV +A G+S +W +L +V S++ +
Sbjct: 58 PHSLYELIPSGALIGGLVVLGNMANNHELVAMQAAGVSRGRIVWAVLRAGIVISLISVVI 117
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKI-----L 170
+ VI P + + + +Q + K + W++ N +++ ++I L
Sbjct: 118 SEYVIPPAERAAQMLKATATRQ--QVASQTKYGV--WIRDGN----VYVNVREIENQERL 169
Query: 171 PENHIWEDFTSITIDKKNKI-IH--RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT 227
+ HI+E I+ D + + +H R D I + + L + I K
Sbjct: 170 GDIHIFE----ISPDGRPALAMHAARASFDRGIWKLEDIGLTRFDPAGNAAIAEHKEQED 225
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ + D F + + S ++ K M++ + N + E F+ +V PL+ +AM
Sbjct: 226 WSSVLSPDMLDVFIVRPENLSAQDLAKYMAYQTE-NAQKSLAVEQAFWGRMVNPLITLAM 284
Query: 288 TLIAASVSLEFSR--SNQPRIIVAYGIFSGFML 318
L+A R S+ RI++ I GF L
Sbjct: 285 LLLAIPFVFNARRDVSSGQRIVIGVTIGLGFYL 317
>gi|284037837|ref|YP_003387767.1| permease YjgP/YjgQ family protein [Spirosoma linguale DSM 74]
gi|283817130|gb|ADB38968.1| permease YjgP/YjgQ family protein [Spirosoma linguale DSM 74]
Length = 358
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 130/319 (40%), Gaps = 47/319 (14%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P I P + + + + L +E++ + G+S +LL P+V+G+ +L + T
Sbjct: 58 IPYWANYISPLMVFIATVFLTSRLAARTEIIAILSSGVSFVRLLLPYVLGATVLAVATYF 117
Query: 119 VINPIATSGEKIGIDLIQQWKDN-----GDKQKSDIIP----WMQISNPQQDIFIGAKKI 169
++N + K I ++ ++ G I P +++ N Q + G K
Sbjct: 118 MVNYVIPKANKTRIAFEIKYINDAYNFSGRNVHLKIAPNTYAYLESYNNQSN--TGYK-- 173
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI--------PI 221
FT ++ N++ + AD I ++ K K V +Y+ I P
Sbjct: 174 ---------FTMERVE-GNQLKQKLSAD-HIEWDAKKKKWTVFDYKIRTINGPQETLTPG 222
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI--- 278
K TTLN +K D FS F + YE + + ++ + + A+ +L+
Sbjct: 223 AKIDTTLN--LKPD---DFSSDF---NLYETLTRPELNDHIELLQSRGADGVETYLLEKY 274
Query: 279 ---VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
P ++ +T+I +S SR VA G F F + K +SG L
Sbjct: 275 SRDTRPFAIIILTVIGVIMSARKSRRGVG-WQVALGFFLAFTYLLFFMLAKGIAESGNLN 333
Query: 336 PVAAALIPVILTISLSILI 354
P+ A +P + ++ +L+
Sbjct: 334 PIVAVWLPNAIFAAIGVLL 352
>gi|253686793|ref|YP_003015983.1| permease YjgP/YjgQ family protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251753371|gb|ACT11447.1| permease YjgP/YjgQ family protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 358
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 81/375 (21%), Positives = 153/375 (40%), Gaps = 33/375 (8%)
Query: 1 MPGILWRYFFKY---YLKTTLYFLLG-AMILVFVIDLNEIQNQMGELPNYSISRGAVLAA 56
M G+L RY K + TTL+ L+ + I+ FV L ++ GE YS +
Sbjct: 1 MFGVLDRYIGKTIFTTIMTTLFMLVSLSGIIKFVDQLRKVGQ--GE---YSALGAGLYTL 55
Query: 57 TRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
VP I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T
Sbjct: 56 LSVPKDIEIFFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLT 115
Query: 117 VLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
+ + ++ GE++ + Q G + W + N FI +++ +
Sbjct: 116 MAIGEWVSPQGEQMARNYRSQMISGGSMISTQGGLWAKDGND----FIYIERVAGD---- 167
Query: 177 EDFTSITI---DKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-- 229
++ + + I D NK++ + A A +D+ +L +V E S TL+
Sbjct: 168 KELSGVNIYHFDDSNKLLSVRYAASAEFEDDRNVWRLSQVDESDLSDGKQIGGSQTLSGE 227
Query: 230 -----IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
P K+ + + R + K + S + + R + + I P+ +
Sbjct: 228 WKTNLTPDKLGVVALEPDALSIRGLHNYAKYLKQSGQ----ESSRYQLNMWSKIFAPVSV 283
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
M L+A S RS + GI GF+ Y + I + + P+ A++P
Sbjct: 284 AVMMLMAVSFIFGPLRSVSAGSRIVIGISFGFLFYLLNEIFRPLSLVYGIPPILGAILPS 343
Query: 345 ILTISLSILILLQKE 359
+ + +S+ +LL++
Sbjct: 344 SVFLCISVALLLKRR 358
>gi|229845238|ref|ZP_04465371.1| predicted permease [Haemophilus influenzae 6P18H1]
gi|229811833|gb|EEP47529.1| predicted permease [Haemophilus influenzae 6P18H1]
Length = 358
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 80/365 (21%), Positives = 149/365 (40%), Gaps = 24/365 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY K L L+ + L VI E +G+ Y I + + +P I+
Sbjct: 7 RYIGKSILGAIFATLMTLVGLSAVIKFVEQFRSVGK-GTYDIWQAVIFTGLTMPKDIETF 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P L+ ++ NL SELV+ ++ G S +++ + ++ L +FT+++
Sbjct: 66 FPMAALLGALIALGNLASRSELVVMQSAGFSRFKIGMAVMKTALPLVVFTMIIGEWGIPQ 125
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E+ D+ + G W + N F+ +++ + + +D T D+
Sbjct: 126 TEQFARDMRAKALSGGSILSIKNGVWAKDGNN----FVFVRRVTDDAKL-DDIYIYTFDQ 180
Query: 187 KNKIIHRKDADLAIIYNDKVK--LKKVVEYQYGRIPIDKNSTTLNI------PIKMDGFQ 238
++ + K ++ A D+ K L++V + I D+ TT ++ + D
Sbjct: 181 QHNLTELKHSNQASYSEDEAKWTLRQV---NHSTITKDEIITTNHLLETWETSLTPDKLG 237
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S + +SF ++ R E F+ I P+ + M L+A S
Sbjct: 238 AVSLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPISVGVMMLLALSFIFGS 296
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA---ALIPVILTISLSILIL 355
RS + GI GF+ Y + I+ G+ ++ + A ALIP +L I + +L
Sbjct: 297 LRSVTAGARIVTGICVGFLFYVVNEIL---GQMSVVYGIPAIFGALIPSLLFIVMIWWLL 353
Query: 356 LQKED 360
K D
Sbjct: 354 SHKRD 358
>gi|294012649|ref|YP_003546109.1| putative permease [Sphingobium japonicum UT26S]
gi|292675979|dbj|BAI97497.1| putative permease [Sphingobium japonicum UT26S]
Length = 367
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL---AATRVPLIIQ 64
Y + +L T L +LV V+ ++ + G++ Y+ + A L A R P I+
Sbjct: 15 YMARLFLTRTFAVL---AMLVAVLQTLDLLGESGDILAYAGNGDAQLWHYVALRAPQIVA 71
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL 101
+ +PF L+ +++ +LN+ SE++ +A G+S Q+
Sbjct: 72 RFLPFSVLLGTLIMLASLNQNSEIISMKAAGLSAHQI 108
>gi|332530549|ref|ZP_08406487.1| permease YjgP/YjgQ [Hylemonella gracilis ATCC 19624]
gi|332039995|gb|EGI76383.1| permease YjgP/YjgQ [Hylemonella gracilis ATCC 19624]
Length = 372
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/204 (18%), Positives = 80/204 (39%), Gaps = 10/204 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMG--ELPNYSISRGAVLAATRVPLIIQ 64
R F+ L T + L + L D + + +G + P + + + + P +
Sbjct: 9 RLLFREILFTASFVTLAFLALFVFFDFIDQLSAVGRPDRPGFELPQALIYVVLLAPGHLY 68
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ I V L ++SE I R G+ W+ L + + T ++ + ++
Sbjct: 69 ELLPITVLIGTIYVMTRLAQSSEFTILRTSGLGPWRALAMLLTAGGVFASATFVIGDYLS 128
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDII---PWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ Q ++ K+ + I W++ P I +LP+ + +
Sbjct: 129 PWSNQVA----QAYRAQFRKEGASTIKGGAWLREREPYAKYGINIGALLPDGTL-QRVRI 183
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK 205
ID ++ A A I ND+
Sbjct: 184 YEIDNAGNLVSTLQASTARINNDQ 207
>gi|255020900|ref|ZP_05292956.1| hypothetical protein ACA_1122 [Acidithiobacillus caldus ATCC 51756]
gi|254969691|gb|EET27197.1| hypothetical protein ACA_1122 [Acidithiobacillus caldus ATCC 51756]
Length = 357
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 70/353 (19%), Positives = 134/353 (37%), Gaps = 17/353 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R F+ L + L + L+FV +L G ++ + + + ++P + +
Sbjct: 6 RLLFRGMLGYSTLVLFVLLALMFVANLIAKSGGPGH-GSWDMGKLVTYISLQLPDLAYNL 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF----VVGSILLGIFTVLVINP 122
IP L+ ++ LN SELV R G S+W+L P + G++L V+
Sbjct: 65 IPLALLLGALIWVSLLNSHSELVALRMSGWSLWRLQRPLLWVGLWGALLTFALGEWVVPY 124
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT-S 181
A + E I W + G +P + Q D I + I + E
Sbjct: 125 TAPAAEAI-------WANGGQGSGFQALPDGGVWLRQGDQLIQIRAIAADGRRLEGLRIV 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP--IKMDGFQK 239
IT + + DA A+ + +L+ V + G I ++T + P +++D
Sbjct: 178 ITTPSLDAVTRMLDAREALYRDGAWQLQGVQSHVLGAQRI-VSTTLVQQPWDVRLDPGTL 236
Query: 240 FSEQFASRSFYEIIKKMSFSN-KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S +R+ S+ N + ++ R F+ + P + + M + +
Sbjct: 237 RSFSHPTRTMTLPALWESYQNLQGSVLSMNRFALAFWKRVTYPWVGLVMIWLVVPLVTRN 296
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
R + G+ G + + + SG + PV A + P+ L S++
Sbjct: 297 PRGGGLAGRILMGLVLGLAFHFLTEMSGFISISGGIPPVFATVFPLALFASIA 349
>gi|86609743|ref|YP_478505.1| YjgP/YjgQ permease [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558285|gb|ABD03242.1| putative permease, YjgP/YjgQ family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 362
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 120/302 (39%), Gaps = 27/302 (8%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSIL---LGIF 115
+P I+ P L ++ + SE+ RA GI ++ P + +L L +
Sbjct: 54 LPAILVVTFPIAGLFTTLLTLGKMGADSEITALRAAGIPYRKVFIPVLCIGLLISGLALL 113
Query: 116 TVLVINPIATSGEKI-GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
T VI P KI +LI Q + + +I D++ I P+
Sbjct: 114 TNEVIVPETNQKVKILNKNLIL-------AQDALLFNPEEIVRVDDDLWFHVGSIDPKTG 166
Query: 175 IWEDFTSITIDKKNKIIHRK-----DADLAIIYNDKVKLKKVVEYQY---GRIPIDK--N 224
+ +D + +D+K + H + A A +L+ VV +Y GR +
Sbjct: 167 LMQDL--LILDRKAETGHLRYPQVISAQTAQQVGQSWQLRDVVIRRYDEQGRTYYEGQVE 224
Query: 225 STTLNIPIKMDGF---QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
LNI K+ G +K ++ + +E ++ + + R T+++ IP
Sbjct: 225 EMQLNIVNKLVGLVYAEKVPQEQRAGELWEQCQRYRAEQRPSA-DVARCLTEYHLKFAIP 283
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
L L+AA + L+ R VA I F+ Y ++++ ++ G+ + P AA
Sbjct: 284 LASFFAILVAAPLGLQTVRQTGRYGGVALAIVLVFIYYVLMSLGRAMGRVEHIDPWLAAW 343
Query: 342 IP 343
+P
Sbjct: 344 LP 345
>gi|50119364|ref|YP_048531.1| putative permease [Pectobacterium atrosepticum SCRI1043]
gi|49609890|emb|CAG73325.1| putative permease [Pectobacterium atrosepticum SCRI1043]
Length = 358
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 81/372 (21%), Positives = 151/372 (40%), Gaps = 27/372 (7%)
Query: 1 MPGILWRYFFKY---YLKTTLYFLLG-AMILVFVIDLNEIQNQMGELPNYSISRGAVLAA 56
M G+L RY K + TTL+ L+ + I+ FV L ++ GE YS +
Sbjct: 1 MFGVLDRYIGKTIFTTIMTTLFMLVSLSGIIKFVDQLRKVGQ--GE---YSALGAGLYTL 55
Query: 57 TRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
VP I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T
Sbjct: 56 LSVPKDIEIFFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLT 115
Query: 117 VLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
+ + ++ GE++ + Q G + W + N FI +++ + +
Sbjct: 116 MAIGEWVSPQGEQMARNYRSQMISGGSMISTQGGLWAKDGNN----FIFIERVTGDKEL- 170
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN----- 229
+ D +NK++ + A A +D+ KL +V E S TL+
Sbjct: 171 SGVSIYRFDDQNKLLSVRYAASAEFEDDRNVWKLSQVDESDLSDGKQIGGSQTLSGEWKT 230
Query: 230 --IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
P K+ + + R + K + S + + R + + I P+ + M
Sbjct: 231 NLTPDKLGVVALEPDALSIRGLHNYAKYLKQSGQ----ESNRYQLNMWSKIFAPVSVAVM 286
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
L+A S RS + GI GF+ Y + I + + P+ A++P +
Sbjct: 287 MLMAVSFIFGPLRSVSAGSRIVIGISFGFLFYLLNEIFRPLSLVYGIPPILGAILPSSVF 346
Query: 348 ISLSILILLQKE 359
+ +S+ +LL++
Sbjct: 347 LFISVALLLKRR 358
>gi|163739704|ref|ZP_02147112.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
gi|161386934|gb|EDQ11295.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
Length = 376
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVV----GSIL 111
A +P +++ ++P ++ V LN SEL + RA G S WQ+ P +V +++
Sbjct: 47 ALALPNLVRMVLPVAAFAASVWVTNRLNSESELTVLRATGTSPWQMAKPAMVFGLITAVM 106
Query: 112 LGIFT-VLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL 170
+ I T VL+ IAT L Q+ + + ++ +P + + +I
Sbjct: 107 MSILTHVLLPASIAT--------LEQRESEVARNVTAKLLSEGDFLHPARGVTFYIGRID 158
Query: 171 PENHIWEDFTSITIDKKN 188
P+ + + F S D++N
Sbjct: 159 PDGTLNDVFLS---DRRN 173
>gi|163743163|ref|ZP_02150545.1| hypothetical protein RG210_14720 [Phaeobacter gallaeciensis 2.10]
gi|161383580|gb|EDQ07967.1| hypothetical protein RG210_14720 [Phaeobacter gallaeciensis 2.10]
Length = 376
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVV----GSIL 111
A +P +++ ++P ++ V LN SEL + RA G S WQ+ P +V +++
Sbjct: 47 ALALPNLVRMVLPVAAFAASVWVTNRLNSESELTVLRATGTSPWQMAKPALVFGLITAVM 106
Query: 112 LGIFT-VLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL 170
+ I T VL+ IAT L Q+ + + ++ +P + + +I
Sbjct: 107 MSILTHVLLPASIAT--------LEQRESEVARNVTAKLLSEGDFLHPARGVTFYIGRID 158
Query: 171 PENHIWEDFTSITIDKKN 188
P+ + + F S D++N
Sbjct: 159 PDGTLNDVFLS---DRRN 173
>gi|307294586|ref|ZP_07574428.1| permease YjgP/YjgQ family protein [Sphingobium chlorophenolicum
L-1]
gi|306879060|gb|EFN10278.1| permease YjgP/YjgQ family protein [Sphingobium chlorophenolicum
L-1]
Length = 367
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL---AATRVP 60
I W Y + +L T L +LV V+ ++ + G++ Y+ + A L A R P
Sbjct: 12 ISW-YMARLFLTRTFAVL---AMLVAVLQTLDLLGESGDILAYAGNGDAQLWHYVALRAP 67
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL 101
I+ + +PF L+ +++ +LN+ SE++ +A G+S Q+
Sbjct: 68 QIVARFLPFSVLLGTLIMLASLNQNSEIISMKAAGLSAHQI 108
>gi|254477380|ref|ZP_05090766.1| permease YjgP/YjgQ [Ruegeria sp. R11]
gi|214031623|gb|EEB72458.1| permease YjgP/YjgQ [Ruegeria sp. R11]
Length = 388
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 21/123 (17%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNE--------IQNQMGELPNYSISRGAVLAATR 58
RY YL L+F A+ILV V +N I + L + + A
Sbjct: 6 RYVLSQYL---LFFGFFALILVAVFWINRAVVLFDRLIGDGQSALVFFEFT------ALS 56
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P +I+ ++P ++ V LN SEL + RA G S WQ+ P ++ GI T +
Sbjct: 57 LPNLIRMVLPVAAFASSVWVTNRLNSESELTVLRATGTSPWQMAKP----ALAFGIITAI 112
Query: 119 VIN 121
+++
Sbjct: 113 MMS 115
>gi|325268898|ref|ZP_08135523.1| hypothetical protein HMPREF9141_0732 [Prevotella multiformis DSM
16608]
gi|324988870|gb|EGC20828.1| hypothetical protein HMPREF9141_0732 [Prevotella multiformis DSM
16608]
Length = 640
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+++ Q +P L+ +++ + NL +SEL R+ GIS+ Q +V S+L+ +
Sbjct: 62 MMVPQALPLAILLSSLISYGNLGESSELTAIRSAGISLVQSFRGLIVISVLIACGSFYFQ 121
Query: 121 NPIATSGEK 129
N + S +K
Sbjct: 122 NNVGPSAQK 130
>gi|284049007|ref|YP_003399346.1| permease YjgP/YjgQ family protein [Acidaminococcus fermentans DSM
20731]
gi|283953228|gb|ADB48031.1| permease YjgP/YjgQ family protein [Acidaminococcus fermentans DSM
20731]
Length = 363
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 56/322 (17%), Positives = 129/322 (40%), Gaps = 37/322 (11%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P +I P L+ ++ L+ SE+ R+ G+S ++ P + ++ +F+V+
Sbjct: 58 MPEVINYTFPMSMLLAALLTMGQLSSNSEITAMRSGGLSFRRIAAPILAAGFVVSLFSVV 117
Query: 119 ----VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
V+ P + E+I ++ +D + ++ ++ Q+S Q A+ +
Sbjct: 118 WAEKVVPPAKSEYERI--IKVEIKRDTKPRTQNHVL-IKQVSKGQLVRLTYARTFDEKQG 174
Query: 175 IWEDFTSITIDK-KNKIIHRK------------DADLAIIYNDKVKLKKVVEYQYGRIPI 221
+ +D T D K I R + K + + + + +PI
Sbjct: 175 MMKDITIEDWDNGKVARIQRTPQAKWTQGTWIMEGGTITDLTGKDGVARTMTFDKQVLPI 234
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFA---SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+ + + QK +Q + + +I+K+ + E + Y
Sbjct: 235 SETPKAITLD------QKDPDQMTIGELKMYIDILKR-------QYMPTSKYEMEIYRRF 281
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+PL LI + ++ R+ + + + + F+ Y+I+T M G+ G++ P+
Sbjct: 282 TVPLASFFFALIGVPLGVQSQRTGA-SMGLGFSVVIIFIYYSIMTFMTGLGQGGVIPPLL 340
Query: 339 AALIPVILTISLSILILLQKED 360
AA P +L + ++ +K++
Sbjct: 341 AAATPNLLCGAFGCWMIYKKDN 362
>gi|319941841|ref|ZP_08016163.1| hypothetical protein HMPREF9464_01382 [Sutterella wadsworthensis
3_1_45B]
gi|319804774|gb|EFW01641.1| hypothetical protein HMPREF9464_01382 [Sutterella wadsworthensis
3_1_45B]
Length = 377
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R F K L +T++ L+ + L DL + +G +Y+I R + + +P ++
Sbjct: 6 RQFAKDILLSTIFVLIVLIALFAFFDLIGQLDDLGA--DYTIGRAFLTTSLTLPSRAYEV 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ ++ TSE + RA G S W+L ++ ++ + T + +A +
Sbjct: 64 MPLAVLLASVYTMSKWASTSEFTVLRASGCSPWRLARSLLIPGVICVLATYGLGEIVAPA 123
Query: 127 GEK 129
++
Sbjct: 124 AQR 126
>gi|319637673|ref|ZP_07992439.1| hypothetical protein HMPREF0604_00062 [Neisseria mucosa C102]
gi|317400828|gb|EFV81483.1| hypothetical protein HMPREF0604_00062 [Neisseria mucosa C102]
Length = 356
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 78/382 (20%), Positives = 157/382 (41%), Gaps = 62/382 (16%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAA---TRVPLII 63
RY + +Y LL + L EI N++G+L S + GA L ++P
Sbjct: 6 RYIIRQMAVMAVYALLAFLALY---SFFEIINEVGDLGKGSYN-GAKLGQYVLMQMPARA 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P L+ ++ L SEL + +A G+S +LL ++L F ++
Sbjct: 62 YELMPLAVLIGGLISLSQLASGSELTVIKASGMSTKKLL-------LILSQFGLIFAIAT 114
Query: 124 ATSGEKIGIDLIQQWKD------NGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN---- 173
GE + L Q+ ++ NG + W++ +++ I +++LP++
Sbjct: 115 VALGEWVAPTLSQKAENIKAAAINGKISTGNTGLWLK----EKNSIINVREMLPDHTLLG 170
Query: 174 -HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKV-KLKKVVEYQYGRIPID-KNSTTLNI 230
IW+ + KN++ +A+ A++ D +LK + G ++ + N
Sbjct: 171 IKIWQR------NDKNELTQAAEAESAVLNPDGSWQLKNIRRSILGEDKVEVSTAAEENW 224
Query: 231 PIK-----MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL-----IVI 280
PI MD +Q + I + +N++ TQ Y + +V
Sbjct: 225 PISVKRNLMDVLLVKPDQMSVGELTTYIDHLEKNNQN---------TQVYAIAWWRKLVY 275
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL---PV 337
P+ M L+A + + + +R + + GI G + + + FG + L P
Sbjct: 276 PVAAWVMALVAFAFTPQTTRHGNMGLKLFGGICLGLLFHFAGRL---FGFTSQLYGVPPF 332
Query: 338 AAALIPVILTISLSILILLQKE 359
A +P +L L++ ++ ++E
Sbjct: 333 LAGALPTVLFALLAVYLIRRQE 354
>gi|304383499|ref|ZP_07365959.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
gi|304335309|gb|EFM01579.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
Length = 634
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 28/143 (19%)
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+++ Q +P L+ +++VF NL +SEL +A GIS+ Q ++ S L+ I +
Sbjct: 62 MLVPQALPLAILLSSLIVFGNLGESSELTAIKAAGISLMQSFRSLILLSCLIAIGSFYFQ 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N + LIQ M+ NP+ +I PE ++
Sbjct: 122 NNVGPEANSRLNVLIQS---------------MRHKNPELEI--------PEGIFYD--- 155
Query: 181 SITIDKKNKIIHRKDADLAIIYN 203
I + N + +K+ D ++Y
Sbjct: 156 --GIPQSNLYVQKKNRDTGVLYG 176
>gi|118580061|ref|YP_901311.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
gi|118502771|gb|ABK99253.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
Length = 382
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAA------TRVPLIIQQIIPFI 70
T FLLG I V+ + +M +L ISRG LA +P + IP
Sbjct: 14 TSLFLLGLGIFTLVL----LMGRMIKLTEMVISRGVALADMGRMIICLMPSFLVYTIPMA 69
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSIL---LGIFTVLVINPIATSG 127
L+ ++ F L+ SE+ + +A GIS+ Q++ P ++ +++ LG++ +V P
Sbjct: 70 FLLAVLLTFGRLSADSEITVMKACGISLVQIMPPVLLCALVAATLGLYAGVVGVPWGNRA 129
Query: 128 -EKIGIDLIQQWKDNGDKQKS--DIIPWMQISNPQQD 161
+ D++ Q + ++K D IP + + D
Sbjct: 130 FAAMSFDMLSQNVSSTIREKVFWDDIPGIVLYTDHYD 166
>gi|262376977|ref|ZP_06070203.1| permease YjgP/YjgQ family protein [Acinetobacter lwoffii SH145]
gi|262308015|gb|EEY89152.1| permease YjgP/YjgQ family protein [Acinetobacter lwoffii SH145]
Length = 356
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV----PLIIQQI 66
K+ +TT +LGA ++ L + +GEL + GA A V P + +I
Sbjct: 9 KHVTQTTALAMLGATAVL--AGLQVLFTYLGELGSLKDGYGAWDALKYVLWGAPNYLYEI 66
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
+P L+ ++ L SEL++ R++G+S+W+++ + ++LL
Sbjct: 67 LPISALIGAVLGLGTLASNSELIVMRSVGVSLWRIVGWVIRSALLL 112
>gi|306835543|ref|ZP_07468557.1| cell division protein FtsX [Corynebacterium accolens ATCC 49726]
gi|304568600|gb|EFM44151.1| cell division protein FtsX [Corynebacterium accolens ATCC 49726]
Length = 300
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 33 LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
+ E+ +Q E+ + + ++ AT + I+ I I LV N+V +RT E I R
Sbjct: 152 VEEVVDQQEEVREAASNLDSIRTATFIVAIVMSIAA-IFLVANMVQIAAFHRTRETEIMR 210
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLV 119
+G S W PFVV ++L + V++
Sbjct: 211 MVGASRWMTQAPFVVEAVLASLIGVVL 237
>gi|255323773|ref|ZP_05364899.1| cell division protein FtsX [Corynebacterium tuberculostearicum
SK141]
gi|255298953|gb|EET78244.1| cell division protein FtsX [Corynebacterium tuberculostearicum
SK141]
Length = 300
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 33 LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
+ ++ +Q E+ + + + A+ AT V I+ + I LV N+V +RT E I R
Sbjct: 152 VEDVVDQQQEVRDAASNLDAIRNATFVLAIVMSVAA-IFLVANMVQIAAFHRTRETEIMR 210
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLV 119
+G S W PFVV ++L + V++
Sbjct: 211 MVGASRWMTQAPFVVEAVLASLIGVVL 237
>gi|300857999|ref|YP_003782982.1| cell division protein [Corynebacterium pseudotuberculosis FRC41]
gi|300685453|gb|ADK28375.1| Cell division protein [Corynebacterium pseudotuberculosis FRC41]
gi|302205726|gb|ADL10068.1| Putative cell division protein FtsX [Corynebacterium
pseudotuberculosis C231]
gi|302330280|gb|ADL20474.1| Putative cell division protein - FtsX [Corynebacterium
pseudotuberculosis 1002]
gi|308275963|gb|ADO25862.1| Putative cell division protein - FtsX [Corynebacterium
pseudotuberculosis I19]
Length = 300
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 33 LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
++ I +Q+ +L + + A+ AT + IQ + + L+VN+V NR E+ I R
Sbjct: 152 VSTIVDQVDDLRGATDNLDAIRNATFIFAAIQAVAA-VFLIVNMVQIAAFNRREEISIMR 210
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
+G S W PFV+ +++ F V++ +A G K
Sbjct: 211 MVGASRWYTQAPFVLEAVIAAFFGA-VLSGVALFGGK 246
>gi|329943109|ref|ZP_08291883.1| hypothetical protein G5Q_0788 [Chlamydophila psittaci Cal10]
gi|332287691|ref|YP_004422592.1| conserved hypothetical membrane transport protein [Chlamydophila
psittaci 6BC]
gi|313848265|emb|CBY17266.1| conserved hypothetical membrane protein [Chlamydophila psittaci
RD1]
gi|325506677|gb|ADZ18315.1| conserved hypothetical membrane transport protein [Chlamydophila
psittaci 6BC]
gi|328814656|gb|EGF84646.1| hypothetical protein G5Q_0788 [Chlamydophila psittaci Cal10]
gi|328914944|gb|AEB55777.1| YjgP/YjgQ family protein [Chlamydophila psittaci 6BC]
Length = 367
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 74/368 (20%), Positives = 156/368 (42%), Gaps = 49/368 (13%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP--NYSISRGAVLAAT------RV 59
Y +K Y+ T +F L ++I++ + I + + + S++ GA L + ++
Sbjct: 2 YIWKRYVLTKFWFSLVSLIVLAFVFYASIHHSLHTIKGNTTSLASGASLKLSILYYLSQI 61
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
L + +IP + V + F++ E+++ +A G+S+ L P + S ++ +
Sbjct: 62 ALKAEFLIPQLVAVATTITLFSMQNKREVLLLQASGLSLKSLTAPLIHSSFIITLLLYAN 121
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQK-SDIIPWMQISNPQQDIFIG-AKKILPENHIWE 177
+ E+I I ++ D G K D +P + + + ++ +K L N ++
Sbjct: 122 FQWLHPICEQISIT--KEHMDRGTLDKVHDKVPALYLKDQTVLLYSSIEQKTLTLNQVFW 179
Query: 178 -------------DFTSITIDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIP 220
FT+ ++ +I + + I Y+D + + +E+ + P
Sbjct: 180 IKNPKTIYTMEKLAFTTPSLPIGLDVIRFSETESGSIELSEYSDMKEFPE-IEFGFYDNP 238
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
K T G + SE F + + +S + I + FY++++
Sbjct: 239 FSKIFTA-------GGKNRLSESFQAIPWNATGLGLSTTIPQRIL---SLLSTFYYMLIS 288
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
PL ++ +I+A + L FSR P + +AY + G I F K+G++L ++
Sbjct: 289 PLACISSMIISAYLCLRFSRV--PTVTLAYLVPLG-----TINTFFIFLKAGMVLSNSSV 341
Query: 341 L--IPVIL 346
L +PV+L
Sbjct: 342 LPILPVML 349
>gi|146283385|ref|YP_001173538.1| permease [Pseudomonas stutzeri A1501]
gi|145571590|gb|ABP80696.1| predicted permease [Pseudomonas stutzeri A1501]
Length = 353
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/193 (18%), Positives = 80/193 (41%), Gaps = 11/193 (5%)
Query: 24 AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLN 83
A++ F+ +L ++Q +Y + P + +++P L+ ++ L
Sbjct: 27 ALLFAFIDELGDVQG------SYGLGDALQYVLLTSPRRLYEMLPMAALIGCLIGLGTLA 80
Query: 84 RTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGD 143
+SEL I RA G+S+ +++ + ++L + +L+ +A E I + G+
Sbjct: 81 SSSELTIMRAAGVSLGRIVLSVMKPMLVLLVAGILIGEYVAPLSEDIAQARRSLAQGAGE 140
Query: 144 KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYN 203
Q S W + Q++ F+ + P + T D++ +++ A A
Sbjct: 141 AQSSKRGLW----HRQENEFVHVNAVQP-GGVLVGVTRYRFDEERRLLSSSFARRASYQG 195
Query: 204 DKVKLKKVVEYQY 216
D +L+ + +
Sbjct: 196 DHWRLENIATTHF 208
>gi|124514757|gb|EAY56269.1| putative permease, YjgP/YjgQ family [Leptospirillum rubarum]
Length = 362
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 120/302 (39%), Gaps = 45/302 (14%)
Query: 83 NRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNG 142
++ EL RA GIS+ + PF+ +L+ + ++ + + ++ D I+ + +
Sbjct: 81 SKNHELTAIRAAGISLVKATKPFLALGVLISLISIAMNYQLVPYAYQM-TDYIKDVRIDQ 139
Query: 143 DKQKSDIIP----WMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADL 198
K + W + N QDI+ GA+ I + + +D+ + + DA
Sbjct: 140 GKSGNVTFELNNVWFRHGN--QDIY-GARTIRDGGNELDKVVLYHLDRTFHLSWQVDA-- 194
Query: 199 AIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP---IKMDGFQKFSEQFASR-------- 247
K + Y G T +P +K++ FQK R
Sbjct: 195 -----------KTLRYHQGLWSFQDGHLTRFLPDGSLKIESFQKMDTTLTRRPVDFTYEK 243
Query: 248 ------SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S+ E+ + ++ KS++ + E +I P+ M L+A + R
Sbjct: 244 TRMTHLSYPELDRYIALLEKSHLPRE-KYEVTRDAMIAFPIAAFLMVLMAIPFGIREGR- 301
Query: 302 NQPRIIVAYGI--FSGFMLYTIITIMKSFGKSGILLPVAAALIP--VILTISLSILILLQ 357
Q I +GI +TI ++ + GK G+LLP +A ++ +S+S+ +LL
Sbjct: 302 -QVGIAKGFGISLLLSMSYWTIYSLGLALGKGGVLLPWISAWFANMIVFFVSISLFLLLN 360
Query: 358 KE 359
+
Sbjct: 361 RS 362
>gi|121534980|ref|ZP_01666798.1| permease YjgP/YjgQ family protein [Thermosinus carboxydivorans
Nor1]
gi|121306393|gb|EAX47317.1| permease YjgP/YjgQ family protein [Thermosinus carboxydivorans
Nor1]
Length = 361
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 57/306 (18%), Positives = 132/306 (43%), Gaps = 30/306 (9%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P II P L+ +++ F L+ +SE+ ++ G+S ++L P + + ++ I V+
Sbjct: 58 LPGIIVLTFPMSMLLASLLAFGRLSASSEITAMKSGGLSFFRLAAPVFIAAFVVSIVAVI 117
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ + ++++ + + + I + + + + A+K +
Sbjct: 118 LNEAVVPRANNAYQNVLRYEIEKSRPKTQEHIVIKDVKDGEIERLTYARKF---DEAANA 174
Query: 179 FTSITIDK--KNKIIHRKDADLAIIYNDK--------------VKLKKVVEYQYGRIPID 222
++T+ + K +++ ++A+ AI N + +L++ + + +P++
Sbjct: 175 MYAVTVQEFDKGRLVRVENAEKAIWDNGRWIMESGIIYDVAPEGQLQRTLRFDKQFMPVE 234
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
K+ P ++ QK E+ + + IK + + E + + + IP
Sbjct: 235 KS------PREIAREQKKPEEMTIKELKQHIKVL----QREYVKTSTYEVELHQRLAIPA 284
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ LI + L+ RS+ I + I F+ YTI+T+ + G+ G + V AA I
Sbjct: 285 ASLVFALIGTPLGLQPHRSSS-SIGLGISIIIIFIYYTIMTVFTALGQGGAIPAVLAAWI 343
Query: 343 PVILTI 348
P I+ I
Sbjct: 344 PNIVFI 349
>gi|241760405|ref|ZP_04758500.1| permease YjgP/YjgQ [Neisseria flavescens SK114]
gi|241319283|gb|EER55761.1| permease YjgP/YjgQ [Neisseria flavescens SK114]
Length = 356
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 75/381 (19%), Positives = 157/381 (41%), Gaps = 60/381 (15%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP--NYSISRGAVLAATRVPLIIQ 64
RY + +Y LL + L EI N++G+L +Y+ ++ ++P
Sbjct: 6 RYIIRQMAVMAVYALLAFLALY---SFFEIINEVGDLGKGSYNSAKLGQYVLMQMPARAY 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ ++ L SEL + +A G+S +LL ++L F ++
Sbjct: 63 ELMPLAVLIGGLISLSQLASGSELTVIKASGMSTKKLL-------LILSQFGLIFAIATV 115
Query: 125 TSGEKIGIDLIQQWKD------NGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN----- 173
GE + L Q+ ++ NG + W++ +++ I +++LP++
Sbjct: 116 ALGEWVAPTLSQKAENIKAAAINGKISTGNTGLWLK----EKNSIINVREMLPDHTLLGI 171
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKV-KLKKVVEYQYGRIPID-KNSTTLNIP 231
IW+ + KN++ +A+ A++ D +LK + G ++ + N P
Sbjct: 172 KIWQR------NDKNELTQAAEAESAVLNPDGSWQLKNIRRSILGEDKVEVSTAAEENWP 225
Query: 232 IK-----MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL-----IVIP 281
I MD +Q + I + +N++ TQ Y + +V P
Sbjct: 226 ISVKRNLMDVLLVKPDQMSVGELTTYIDHLEKNNQN---------TQVYAIAWWRKLVYP 276
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL---PVA 338
+ M L+A + + + +R + + GI G + + + FG + L P
Sbjct: 277 VAAWVMALVAFAFTPQTTRHGNMGLKLFGGICLGLLFHFAGRL---FGFTSQLYGVPPFL 333
Query: 339 AALIPVILTISLSILILLQKE 359
A +P +L L++ ++ ++E
Sbjct: 334 AGALPTVLFALLAVYLIRRQE 354
>gi|322435367|ref|YP_004217579.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX9]
gi|321163094|gb|ADW68799.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX9]
Length = 813
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVV 107
+P I+ + P LV +V F +L +TSE +A G+S+++++ P +V
Sbjct: 478 IPYILYNVTPLCVLVAVLVTFGSLAKTSEFTAMKASGVSLYRVVTPVLV 526
>gi|319789793|ref|YP_004151426.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
gi|317114295|gb|ADU96785.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
Length = 359
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 72/139 (51%), Gaps = 10/139 (7%)
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP-FVVGSI--LL 112
A +P + +IP ++ ++VF +N +EL +++ GIS+ +L P F++G I LL
Sbjct: 54 AKGLPAFLGIVIPMSFVLSVVIVFIGMNSNNELTAAKSCGISLKELSKPVFLLGLIFSLL 113
Query: 113 GIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE 172
++++ + P K + + ++ ++ K+ + I + S+ + +K+ PE
Sbjct: 114 SFYSLMFLAP------KSNVAMKRELEELLRKKITLSITEKRFSSNFPGVTFYVEKLYPE 167
Query: 173 NHIWEDFTSITIDKKNKII 191
+ +F + ++ KK K++
Sbjct: 168 KGLLVNFMA-SLQKKEKLV 185
>gi|119383653|ref|YP_914709.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
gi|119373420|gb|ABL69013.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
Length = 382
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+PL+I ++P + L+ SELV +A G+S W++ P +V +L+ + L
Sbjct: 57 LPLVISVVLPIAAFAASAYGTNRLSSESELVAMQATGMSPWRMARPVLVFGVLVALMVAL 116
Query: 119 VINPI 123
+++ +
Sbjct: 117 LVHAV 121
>gi|191169423|ref|ZP_03031162.1| putative permease, YjgP/YjgQ family [Escherichia coli B7A]
gi|309794090|ref|ZP_07688515.1| conserved hypothetical protein [Escherichia coli MS 145-7]
gi|190900537|gb|EDV60347.1| putative permease, YjgP/YjgQ family [Escherichia coli B7A]
gi|308122497|gb|EFO59759.1| conserved hypothetical protein [Escherichia coli MS 145-7]
Length = 359
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 135/335 (40%), Gaps = 46/335 (13%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
Y ++ ++ +P + ++ PFI L+ IV L++ SEL R++G SI+++
Sbjct: 43 GYRWTQAVLVVLMTLPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALV 102
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
+V IL + + I +W + +Q++ +QI + +
Sbjct: 103 ALVAGILW----------------TVSLGAIDEWVASPLQQQA-----LQIKSTATA--L 139
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDK 223
G + N +W + + K+ + + I Y D + L+ + + I DK
Sbjct: 140 GEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRDDLSLESYIYARSATIKDDK 199
Query: 224 NSTTLNIPIK--MDGFQ--------KFSEQFASRSFYEI-IKKMSFSNKS-NIFHNYRAE 271
+ K ++G + + F S + E+ + SFS + N + NY E
Sbjct: 200 TWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNLEELSMPGNSFSVRQLNHYINYLQE 259
Query: 272 T---------QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
T + + P++ +AM L+A + RS +A G+ G + +
Sbjct: 260 TGQPSSEYRLALWEKLGHPILTLAMILLAVPFTFSAPRSPGMGSRLAVGVIVGLLTWISY 319
Query: 323 TIMKSFGKS-GILLPVAAALIPVILTISLSILILL 356
IM + G + PVAA +P+ ++ IL+ L
Sbjct: 320 QIMVNLGLLFALSAPVAALGLPMAFVLAALILVYL 354
>gi|254465542|ref|ZP_05078953.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
gi|206686450|gb|EDZ46932.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
Length = 364
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
A +P +I+ ++P + V LN SEL + RA G S WQ+ P ++ GI
Sbjct: 46 ALTLPNLIRMVLPIAAFGAAVWVTNRLNSESELTVLRATGTSPWQMARP----ALAFGII 101
Query: 116 TVLVINPI 123
T L+++ +
Sbjct: 102 TALMMSAL 109
>gi|298291096|ref|YP_003693035.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
gi|296927607|gb|ADH88416.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
Length = 385
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG 113
+P +I + P + F +N SE+V+S A GIS W+ L P V+ ++++
Sbjct: 57 LPALILGLAPAALFMAVAYTLFRMNSDSEIVVSSAAGISTWRFLRPLVILALIVA 111
>gi|238064524|ref|ZP_04609233.1| hypothetical protein MCAG_05490 [Micromonospora sp. ATCC 39149]
gi|237886335|gb|EEP75163.1| hypothetical protein MCAG_05490 [Micromonospora sp. ATCC 39149]
Length = 852
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
+VN + L RT EL + RAIG+ Q + V ++++ +F L+ + T +G
Sbjct: 741 IVNTLALSVLERTRELGLLRAIGLRRAQTMRMITVEAVVISVFGALLGVAVGTG---LGA 797
Query: 133 DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
+++ KD G ++PW Q+ IF+G
Sbjct: 798 AVVRALKDEGITDL--VLPWSQMG-----IFLG 823
>gi|103487658|ref|YP_617219.1| permease YjgP/YjgQ [Sphingopyxis alaskensis RB2256]
gi|98977735|gb|ABF53886.1| permease YjgP/YjgQ [Sphingopyxis alaskensis RB2256]
Length = 366
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + +L T L ++++ +DL ++ +P S R+P II+ +
Sbjct: 15 YVGRLFLFRTFAILFALVLILQTLDLLGESGKILAVPGNGDSDVWRYVGMRMPQIIETFL 74
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQ 100
PF L+ I+ LN+ SE+V +A G+S Q
Sbjct: 75 PFSVLLGTILTMVTLNQNSEVVAMKAAGMSAHQ 107
>gi|227502943|ref|ZP_03932992.1| cell division protein [Corynebacterium accolens ATCC 49725]
gi|227076365|gb|EEI14328.1| cell division protein [Corynebacterium accolens ATCC 49725]
Length = 300
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 33 LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
+ E+ +Q E+ + + ++ AT + I+ I I LV N+V +RT E I R
Sbjct: 152 VEEVVDQQEEVREAASNLDSIRTATFIVAIVMSIAA-IFLVANMVQIAAFHRTRETEIMR 210
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLV 119
+G S W PFVV ++L + V++
Sbjct: 211 MVGASRWMTQAPFVVEAVLASLIGVVL 237
>gi|225871810|ref|YP_002753264.1| permease, YjgP/YjgQ family [Acidobacterium capsulatum ATCC 51196]
gi|225794430|gb|ACO34520.1| permease, YjgP/YjgQ family [Acidobacterium capsulatum ATCC 51196]
Length = 772
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI 114
P +I I P L+ +VVF +NR+SE+ +A GIS+++++ P +V + L+ +
Sbjct: 462 TPSMIYLITPLAVLIAVLVVFGLMNRSSEITAMKATGISLYRIVLPIMVIASLMAV 517
>gi|298529509|ref|ZP_07016912.1| permease YjgP/YjgQ family protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510945|gb|EFI34848.1| permease YjgP/YjgQ family protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 355
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 75/372 (20%), Positives = 152/372 (40%), Gaps = 44/372 (11%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV---- 59
+L RY + L T L ++ ++D N M E A L A +V
Sbjct: 3 VLNRYLLRQNLFYTAVLLFSGTMVYLIVDFVGRMNAMVE---------AGLGALQVLEYF 53
Query: 60 ----PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
PLI+ Q +P I ++ ++ ++R++ELV + IS ++ F +G L+ +F
Sbjct: 54 VFKMPLIVAQTLPAIFMLGVLIQMAMMHRSNELVAMESSAIS-FRKPAVFFIGYALV-VF 111
Query: 116 TVLVI--NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
+L + + GE++ Q W + +++ + + +D I ++
Sbjct: 112 MLLFVFSETLGVRGEQVT---RQIWNQDVRDREAAVEGLEDVWVKDRDYMIHIERAHINE 168
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
+DFT+ KI A ++ +++ L+ V ++ + ++ + + +K
Sbjct: 169 GRGKDFTAYKKSDPGKIQEIIKAPEFEVHKNRLLLRDVTVFKPHSLE-RQSLQEMEMEVK 227
Query: 234 MDGFQKFS--------EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+D + F+ + ++ + ++ ++ S S + T + I P LV
Sbjct: 228 ID-LRSFALVDSDLPYQAWSIFTLSALVNQLKESGAS----VEKISTALHSKIAYPFALV 282
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
MTL+A ++ F+R +V G+ F YT+ S+ + G+ P A
Sbjct: 283 VMTLLALAL---FTRIKNIYALVTLGLVIVFFYYTVYVFGVSYAEEGVTAPFVGAWTA-- 337
Query: 346 LTISLSILILLQ 357
+ IL LLQ
Sbjct: 338 -NVFFGILSLLQ 348
>gi|282892297|ref|ZP_06300693.1| hypothetical protein pah_c221o031 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281497888|gb|EFB40239.1| hypothetical protein pah_c221o031 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 359
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 42/72 (58%)
Query: 57 TRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
+++P I+ +IP +L+ ++++ L++T EL RA G +I +L P ++ + + +
Sbjct: 34 SQIPYILPIVIPISSLIASLLLIQRLSQTHELTALRASGWAIRDILYPILIAAAFIALLN 93
Query: 117 VLVINPIATSGE 128
+++ +AT+
Sbjct: 94 FYIVSELATNSH 105
>gi|149196258|ref|ZP_01873313.1| permease YjgP/YjgQ [Lentisphaera araneosa HTCC2155]
gi|149140519|gb|EDM28917.1| permease YjgP/YjgQ [Lentisphaera araneosa HTCC2155]
Length = 358
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI 114
+P I P L+ I F +LNR E++ R+ G+S+ +L P + S+L+GI
Sbjct: 58 IPDKFTYIAPMSLLLATIYCFSSLNRNHEVIAMRSAGLSLTKLSAPIYLFSVLVGI 113
>gi|32266995|ref|NP_861027.1| hypothetical protein HH1496 [Helicobacter hepaticus ATCC 51449]
gi|32263047|gb|AAP78093.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 359
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 76/358 (21%), Positives = 141/358 (39%), Gaps = 35/358 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSI---SRGAVLAATRVP 60
+++R+ YYLK LG ID+ + +++ + N I + A T
Sbjct: 1 MIFRFVGVYYLKYFFIIFLGLEGFFLAIDMLKYVDELPDSANLLILFLFYNGIFALTYT- 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP-FVVGSILLGIFTVLV 119
+P ++ +I+ + ++S+L A+G S Q+L P V+ S+ +G F L
Sbjct: 60 ------LPISLVLCSILFYMAFLKSSQLTALMALGYSKRQILAPLLVISSVFIGGFIGLN 113
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP---ENHIW 176
A + E + QQ N + + + + Q IFI +K+ P E
Sbjct: 114 TTSFAYAKEYAESIIYQQNTQNAREN-------LLLKSDNQYIFI--RKLYPLLNEQARA 164
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNI 230
E T+D ++K+ + +A A N+ LK V + G + K +T+ I
Sbjct: 165 EGIKVFTLDGEHKLKNYHEAQEAFFENNVWILKNVKSLEIASSLTLGEKAL-KITTSGEI 223
Query: 231 PIKMDGFQKFSEQFA----SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
I D K E A + S + I + ++K N+ + + + Y L+VIP +
Sbjct: 224 EILKDFSSKVLETIAQDKPTASVIDAIASLRIAHKQNVSSD-KIRSILYALLVIPFFVPL 282
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
I + R I I ++ + + +G++ P L+P+
Sbjct: 283 CIAIISYYIPSLPRYGNLTFISFVCIIGALAVWGLFFSLSQLSVAGLIYPEIGLLLPM 340
>gi|215488305|ref|YP_002330736.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
gi|215266377|emb|CAS10814.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
Length = 359
Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 69/325 (21%), Positives = 129/325 (39%), Gaps = 50/325 (15%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
Y ++ ++ +P + ++ PFI L+ IV L++ SEL R+ G SI+++
Sbjct: 43 GYRWTQAVLVVLMTLPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV 102
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
+V IL + + I +W + +Q++ +QI + +
Sbjct: 103 ALVAGILW----------------TVSLGAIDEWVASPLQQQA-----LQIKSTATA--L 139
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDK 223
G + N +W + + K+ + D+ I Y D + L+ + + I DK
Sbjct: 140 GEDDDITGNMLWARRGNEFVTVKSLNEQGQPVDVEIFHYRDDLSLESYIYARSATIEDDK 199
Query: 224 NSTTLNIPIK--MDG--FQKFSEQFASRSFYEIIKKMSFSNKSNIFH--------NYRAE 271
+ K ++G Q+ S+ A +S + + S N F +Y E
Sbjct: 200 TWILHGVNHKKWLNGKETQETSDYLAWQSTFTSMNLEELSMPGNTFSVRQLNHYIHYLQE 259
Query: 272 T---------QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI--IVAYGIFSGFMLYT 320
T + + P++ +AM L+A V FS PR+ +A G+ G + +
Sbjct: 260 TGQPSSEYRLALWEKLGQPILTLAMILLA--VPFTFSAPRSPRMGSRLAVGVIVGLLTWI 317
Query: 321 IITIMKSFGKS-GILLPVAAALIPV 344
IM + G + PV A +PV
Sbjct: 318 SYQIMVNLGLLFALSAPVTALGLPV 342
>gi|332296606|ref|YP_004438529.1| permease YjgP/YjgQ family protein [Thermodesulfobium narugense DSM
14796]
gi|332179709|gb|AEE15398.1| permease YjgP/YjgQ family protein [Thermodesulfobium narugense DSM
14796]
Length = 365
Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 65/318 (20%), Positives = 126/318 (39%), Gaps = 20/318 (6%)
Query: 51 GAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI 110
GA LAA +P I P TL+ ++ ++ ELV R+ G+SI++ PF++ I
Sbjct: 54 GAKLAACGLPYSIAFAFPMATLLGVLMAVSRISSNWELVALRSAGLSIFKFSLPFIIIGI 113
Query: 111 LLGIFTVLVINPIATS-GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKI 169
+ + +A +K + + K + ++ +++ + +PQ I AK
Sbjct: 114 IFSTVSFFTFEKLAYPLLDKSRYIIAKDLKKELNTERQNVLFKLPPDSPQPKFIIFAKDY 173
Query: 170 LPENHIWEDFTSITIDKKNKIIHRK--DADLAIIYNDKVKLKKVVEYQY-------GRIP 220
P +D D N+ + R ++L+ N V K + Y++ GR+
Sbjct: 174 KPATMSLQDVYIQEFD--NEFLKRTIYSSELSFTGNRWVA-SKGLSYEFSKDGIIVGRLD 230
Query: 221 IDKNSTTLNI-PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
+K L + P + +++ SF+E++ + SN +I Y +
Sbjct: 231 FEKLIVPLGVLPQTVKALP--TKKPRDMSFFELLSYL--SNSKDIVDK-SLYVDLYNKLS 285
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
+P A I + + R + I I + Y I ++ + G L P A
Sbjct: 286 LPFACFAFACIGVAFGIASERKSS-AIGFGIAITTVLFYYLIFSLFTTLGYMSYLPPFIA 344
Query: 340 ALIPVILTISLSILILLQ 357
+ IL I ++++
Sbjct: 345 SFGADILITIFGIFMVVK 362
>gi|257465008|ref|ZP_05629379.1| permease, inner membrane protein yjgQ [Actinobacillus minor 202]
gi|257450668|gb|EEV24711.1| permease, inner membrane protein yjgQ [Actinobacillus minor 202]
Length = 360
Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
R E F+ + P+ + M L+A S RS+ + GI +GFM Y + +
Sbjct: 268 RFEITFWRKVYQPISMAVMMLLAISFIFGPLRSSTMGAKIVIGIVAGFMFYVANIVFGNM 327
Query: 329 GKSGILLPVA-AALIPVILTISLSILILLQKED 360
LPV+ ALIP ++ +S+ +L +K D
Sbjct: 328 SLIATWLPVSIGALIPSLICLSIVWWLLTKKRD 360
>gi|325853208|ref|ZP_08171296.1| permease, YjgP/YjgQ family [Prevotella denticola CRIS 18C-A]
gi|325484384|gb|EGC87307.1| permease, YjgP/YjgQ family [Prevotella denticola CRIS 18C-A]
Length = 703
Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+++ Q +P L+ +++ + NL +SEL ++ GIS+ Q +V S+L+ +
Sbjct: 121 MMVPQALPLAILLSSLISYGNLGESSELTAIKSAGISLVQSFRGLIVISVLIACGSFYFQ 180
Query: 121 NPIATSGEK 129
N + S +K
Sbjct: 181 NNVGPSAQK 189
>gi|326561252|gb|EGE11611.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis 46P47B1]
Length = 120
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 11/113 (9%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN----YSISRGAVLAATRVPLIIQQI 66
KY +++ L + GA++ ++++ + + + EL N Y+++ + R P + Q
Sbjct: 8 KYVIRSALLAMAGAVVGLWLVQM--VFAYLAELDNISETYTLTDALLFILYRSPYFLVQF 65
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISI-----WQLLNPFVVGSILLGI 114
IP TL+ ++ L SEL++ RA G+SI W +L + +I LG+
Sbjct: 66 IPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGV 118
>gi|320539288|ref|ZP_08038958.1| putative conserved inner membrane protein [Serratia symbiotica str.
Tucson]
gi|320030680|gb|EFW12689.1| putative conserved inner membrane protein [Serratia symbiotica str.
Tucson]
Length = 356
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 79/380 (20%), Positives = 150/380 (39%), Gaps = 45/380 (11%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + ++G+ +Y++ + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIIMTLFMLVSLSGIIKFVDQLRRVGQ-GDYTVLGAGMFTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGQLATRSELVVMQASGFTRMQIAGSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A G+++ D Q G + W + N FI +++ E +
Sbjct: 120 EWVAPQGDQMAHDFRAQQMYGGSLLSTKSGLWAKDGND----FIYIERVSGEKEL----- 170
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKV-----VEYQYGRIPIDK-NSTTLNIPIKM 234
I H +ND+ +L+ V ++ G + + +++ L +
Sbjct: 171 -----AGVNIYH---------FNDRRRLETVRYAATASFEDGVWKLSQVDTSDLTNEELV 216
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKS---NIFHNY------------RAETQFYFLIV 279
G Q + ++ + E + ++ S HNY R + + I
Sbjct: 217 TGTQTLTGEWKTNLTPEKLGVVALDPTSLSIKGLHNYVKYLKQSGQEANRYQLNMWNKIF 276
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
PL + M L+A S RS I V GI GF+ Y + I + PV
Sbjct: 277 SPLSVAVMMLMALSFIFGPLRSVPMGIRVVTGISFGFLFYVLDQIFGQLSLVYNMPPVLG 336
Query: 340 ALIPVILTISLSILILLQKE 359
AL+P ++ + +S+ +LL+++
Sbjct: 337 ALLPSMMFLLISMYMLLKRK 356
>gi|242761384|ref|XP_002340169.1| chromate ion transporter, putative [Talaromyces stipitatus ATCC
10500]
gi|218723365|gb|EED22782.1| chromate ion transporter, putative [Talaromyces stipitatus ATCC
10500]
Length = 521
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 29 FVIDLNEIQNQMGELPNYSISRGAV-LAATRVPLIIQQI-------IPFITLVVNIVVFF 80
F+I L IQ G N+++ GA+ L A+R P ++ I IP ITL V + F+
Sbjct: 371 FLIGLAIIQAWPGPNFNFAVYLGALALRASRYPTVLGAILGFLGIFIPGITLAVAVQSFW 430
Query: 81 NLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN---PIATSGEKIGID 133
+ R ++ V+ G LN VG + ++ + I P ATSG+ + +D
Sbjct: 431 RVLRKNKWVVDLLHG------LNATAVGLVFTAVYRLWNIGYLTPEATSGQSLALD 480
>gi|193062018|ref|ZP_03043114.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
gi|300824069|ref|ZP_07104190.1| conserved hypothetical protein [Escherichia coli MS 119-7]
gi|331669796|ref|ZP_08370641.1| putative permease [Escherichia coli TA271]
gi|192932238|gb|EDV84836.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
gi|300523459|gb|EFK44528.1| conserved hypothetical protein [Escherichia coli MS 119-7]
gi|331062709|gb|EGI34623.1| putative permease [Escherichia coli TA271]
Length = 359
Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 134/335 (40%), Gaps = 46/335 (13%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
Y ++ ++ +P + ++ PFI L+ IV L++ SEL R+ G SI+++
Sbjct: 43 GYRWTQAVLVVLMTLPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV 102
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
+V IL + + I +W + +Q++ +QI + +
Sbjct: 103 ALVAGILW----------------TVSLGAIDEWVASPLQQQA-----LQIKSTATA--L 139
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDK 223
G + N +W + + K+ + + I Y D + L+ + + I DK
Sbjct: 140 GEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRDDLSLESYIYARSATIEDDK 199
Query: 224 NSTTLNIPIK--MDGFQ--------KFSEQFASRSFYEI-IKKMSFSNKS-NIFHNYRAE 271
+ K ++G + + F S + E+ + SFS + N + NY E
Sbjct: 200 TWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNLEELSMPGNSFSVRQLNHYINYLQE 259
Query: 272 T---------QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
T + + P++ +AM L+A + RS +A G+ G + +
Sbjct: 260 TGQPSSEYRLALWEKLGHPILTLAMILLAVPFTFSAPRSPGMGSRLAVGVIVGLLTWISY 319
Query: 323 TIMKSFGKS-GILLPVAAALIPVILTISLSILILL 356
IM + G + PVAA +P+ ++ IL+ L
Sbjct: 320 QIMVNLGLLFALSAPVAALGLPMAFVLAALILVYL 354
>gi|240948567|ref|ZP_04752940.1| permease, inner membrane protein yjgQ [Actinobacillus minor NM305]
gi|240297075|gb|EER47646.1| permease, inner membrane protein yjgQ [Actinobacillus minor NM305]
Length = 360
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
R E F+ + P+ + M L+A S RS+ + GI +GFM Y + +
Sbjct: 268 RFEITFWRKVYQPISMAVMMLLAISFIFGPLRSSTMGAKIVIGIVAGFMFYVANIVFGNM 327
Query: 329 GKSGILLPVA-AALIPVILTISLSILILLQKED 360
LPV+ ALIP ++ +S+ +L +K D
Sbjct: 328 SLIATWLPVSIGALIPSLICLSIVWWLLTKKRD 360
>gi|293449327|ref|ZP_06663748.1| hypothetical protein ECCG_02358 [Escherichia coli B088]
gi|291322417|gb|EFE61846.1| hypothetical protein ECCG_02358 [Escherichia coli B088]
Length = 359
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 134/335 (40%), Gaps = 46/335 (13%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
Y ++ ++ +P + ++ PFI L+ IV L++ SEL R+ G SI+++
Sbjct: 43 GYRWTQAVLVVLMTLPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV 102
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
+V IL + + I +W + +Q++ +QI + +
Sbjct: 103 ALVAGILW----------------TVSLGAIDEWVASPLQQQA-----LQIKSTATA--L 139
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDK 223
G + N +W + + K+ + + I Y D + L+ + + I DK
Sbjct: 140 GEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRDDLSLESYIYARSATIEDDK 199
Query: 224 NSTTLNIPIK--MDGFQ--------KFSEQFASRSFYEI-IKKMSFSNKS-NIFHNYRAE 271
+ K ++G + + F S + E+ + SFS + N + NY E
Sbjct: 200 TWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNLEELSMPGNSFSVRQLNHYINYLQE 259
Query: 272 T---------QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
T + + P++ +AM L+A + RS +A G+ G + +
Sbjct: 260 TGQPSSEYRLALWEKLGHPILTLAMILLAVPFTFSAPRSPGMGSRLAVGVIVGLLTWISY 319
Query: 323 TIMKSFGKS-GILLPVAAALIPVILTISLSILILL 356
IM + G + PVAA +P+ ++ IL+ L
Sbjct: 320 QIMVNLGLLFALSAPVAALGLPMAFVLAALILVYL 354
>gi|325279047|ref|YP_004251589.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
20712]
gi|324310856|gb|ADY31409.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
20712]
Length = 487
Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 54 LAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG 113
+A T VP+ + P L+ +I+ F +L EL+ ++ GIS+++++ P ++ I L
Sbjct: 56 VATTLVPMAL----PLAVLLSSIMTFGSLGENYELIALKSAGISLYRIMKPLIILIICLT 111
Query: 114 IFTVLVINPI 123
+F + N I
Sbjct: 112 VFAFVFSNNI 121
>gi|82701537|ref|YP_411103.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
gi|82409602|gb|ABB73711.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
Length = 354
Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL-LN 103
YS+ + A +P Q+ PFI L+ N+ L SEL R G+S + L
Sbjct: 43 TYSVKDAFLYTALLLPRRFIQLAPFIALMGNVTALGRLAVGSELTALRGAGVSPLGISLA 102
Query: 104 PFVVGSILLGIFTVL 118
P VVG ILL TVL
Sbjct: 103 PVVVGIILLLFITVL 117
>gi|33151746|ref|NP_873099.1| hypothetical protein HD0552 [Haemophilus ducreyi 35000HP]
gi|33147967|gb|AAP95488.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 360
Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 79/363 (21%), Positives = 150/363 (41%), Gaps = 16/363 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K + LL + LVF+I L E +GE NY A +P I
Sbjct: 8 ILERYIGKTIIMMMFAVLLMSSGLVFIIKLVEEFKNVGE-GNYDALTATYYALLMLPSDI 66
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ +P + L+ ++ NL SELV+ ++ G S +++ + +I + I T+ I
Sbjct: 67 KEFVPVVLLIGGLLGLSNLASHSELVVMQSTGFSRFRIGLAVMKTAIPIIILTMSASEWI 126
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E+ ++ + G ++ W + N F+ + I E+ + +I+
Sbjct: 127 IPKVEQFARNMRSVAQSGGSMLSTNGGFWAKDGNN----FLYIRHIENEHQL----NNIS 178
Query: 184 IDK-KNKIIHRKDADLAIIYNDK----VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
I +NK++ + ++N K L+ +G + + I
Sbjct: 179 IYHFENKVLTSVSQADSALFNGKDWTLQNLQTATITDHGIQTTHQANQNWQTTITPSKLG 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + S S + +SF ++ + R + F+ + P+ + M L+A S
Sbjct: 239 IVSLKPESLSIAGLADYVSFLTETGQ-DSKRFQIAFWRKVYQPISMAVMMLLAISFIFGP 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA-AALIPVILTISLSILILLQ 357
RS+ + GI +GF+ Y + + LP+A ALIP ++ +++ +L +
Sbjct: 298 LRSSAMGTKLFIGIIAGFIFYVSNIVFGNMTLVFSWLPIAIGALIPSLICLAIVWWLLTK 357
Query: 358 KED 360
K D
Sbjct: 358 KRD 360
>gi|218696688|ref|YP_002404355.1| hypothetical protein EC55989_3395 [Escherichia coli 55989]
gi|218353420|emb|CAU99485.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli 55989]
Length = 386
Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 134/335 (40%), Gaps = 46/335 (13%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
Y ++ ++ +P + ++ PFI L+ IV L++ SEL R+ G SI+++
Sbjct: 70 GYRWTQAVLVVLMTLPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV 129
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
+V IL + + I +W + +Q++ +QI + +
Sbjct: 130 ALVAGILW----------------TVSLGAIDEWVASPLQQQA-----LQIKSTATA--L 166
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDK 223
G + N +W + + K+ + + I Y D + L+ + + I DK
Sbjct: 167 GEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRDDLSLESYIYARSATIEDDK 226
Query: 224 NSTTLNIPIK--MDGFQ--------KFSEQFASRSFYEI-IKKMSFSNKS-NIFHNYRAE 271
+ K ++G + + F S + E+ + SFS + N + NY E
Sbjct: 227 TWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNLEELSMPGNSFSVRQLNHYINYLQE 286
Query: 272 T---------QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
T + + P++ +AM L+A + RS +A G+ G + +
Sbjct: 287 TGQPSSEYRLALWEKLGHPILTLAMILLAVPFTFSAPRSPGMGSRLAVGVIVGLLTWISY 346
Query: 323 TIMKSFGKS-GILLPVAAALIPVILTISLSILILL 356
IM + G + PVAA +P+ ++ IL+ L
Sbjct: 347 QIMVNLGLLFALSAPVAALGLPMAFVLAALILVYL 381
>gi|327314112|ref|YP_004329549.1| permease [Prevotella denticola F0289]
gi|326944181|gb|AEA20066.1| permease, YjgP/YjgQ family [Prevotella denticola F0289]
Length = 645
Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+++ Q +P L+ +++ + NL +SEL ++ GIS+ Q +V S+L+ +
Sbjct: 63 MMVPQALPLAILLSSLISYGNLGESSELTAIKSAGISLVQSFRGLIVISVLIACGSFYFQ 122
Query: 121 NPIATSGEK 129
N + S +K
Sbjct: 123 NNVGPSAQK 131
>gi|317486218|ref|ZP_07945052.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
gi|316922517|gb|EFV43769.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
Length = 357
Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 72/366 (19%), Positives = 146/366 (39%), Gaps = 27/366 (7%)
Query: 9 FFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLA--ATRVPLIIQQ 65
F+Y K LL + + + + L ++ ++ +S G VL ++PL+I Q
Sbjct: 4 LFRYLTKNNAMILLPTLAVGIGLYVLTDLFERLDNFIEAGLSVGMVLTYFVVKMPLVISQ 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
I+P I L+ ++ + R+ EL +A GIS+ + N ++ I G + +
Sbjct: 64 ILPVIFLLSTVIQLCIMARSRELTALQAGGISLGVVANSMILCGIFWGGVQLGFSEYLGV 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+GE+ + + W++ K+ + D + + P+ H F+ +
Sbjct: 124 AGER---ESARIWQEEVRKKNLAATVLKDVWFTDGDWIVSLGTLDPQAHG-TGFSGYELS 179
Query: 186 KKNKIIHR-KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD--GFQKFS- 241
I R A + L+ V Y ++ + +P++ D F+ S
Sbjct: 180 DDGLSIKRIVQASTFTAEPNHWALQDVRVYTPDTFTQEQEPDFV-LPLRQDPETFRLVST 238
Query: 242 ----EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+Q + I ++ S+ SN+ T ++ + ++ M +A ++
Sbjct: 239 GTKPQQLPLWQLGDAISQLK-SSGSNV---EALRTAWHAKLAYAASILVMAFVATAI--- 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA----LIPVILTISLSIL 353
S + I V + F+ + + T+ + G+ GIL P AA LI + I
Sbjct: 292 VSWKDNIYIAVTVALLCTFLYFAVYTLGTTLGQRGILHPFLAAWTANLIALFFAFWRLIP 351
Query: 354 ILLQKE 359
+LL++E
Sbjct: 352 LLLRRE 357
>gi|13476526|ref|NP_108096.1| hypothetical protein mll7866 [Mesorhizobium loti MAFF303099]
gi|14027287|dbj|BAB54241.1| mll7866 [Mesorhizobium loti MAFF303099]
Length = 400
Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 54 LAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG 113
+AA +P II ++PF +V +N SELV+ A G S W ++ P ++ ++
Sbjct: 52 VAALILPSIIPIVVPFALVVAVAQTLSVMNSDSELVVVNAAGASRWTIVRPIMLLALAAS 111
Query: 114 IFTVLVINPIATSGEKIGIDLIQQ 137
+F+ V N I + L+ Q
Sbjct: 112 VFSFAVDNGIDPYARQKNRALVAQ 135
>gi|126441903|ref|YP_001058063.1| hypothetical protein BURPS668_1013 [Burkholderia pseudomallei 668]
gi|126221396|gb|ABN84902.1| putative membrane protein [Burkholderia pseudomallei 668]
Length = 383
Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 RYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQAPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN-------PFVVGSILLGIF 115
IP L+ I VF + SE I R G++ Q L P V+ + L+G F
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEF 120
>gi|331679053|ref|ZP_08379725.1| putative permease [Escherichia coli H591]
gi|331073118|gb|EGI44441.1| putative permease [Escherichia coli H591]
Length = 386
Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 134/335 (40%), Gaps = 46/335 (13%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
Y ++ ++ +P + ++ PFI L+ IV L++ SEL R+ G SI+++
Sbjct: 70 GYRWTQAVLVVLMTLPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV 129
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
+V IL + + I +W + +Q++ +QI + +
Sbjct: 130 ALVAGILW----------------TVSLGAIDEWVASPLQQQA-----LQIKSTATA--L 166
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDK 223
G + N +W + + K+ + + I Y D + L+ + + I DK
Sbjct: 167 GEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRDDLSLESYIYARSATIEDDK 226
Query: 224 NSTTLNIPIK--MDGFQ--------KFSEQFASRSFYEI-IKKMSFSNKS-NIFHNYRAE 271
+ K ++G + + F S + E+ + SFS + N + NY E
Sbjct: 227 TWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNLEELSMPGNSFSVRQLNHYINYLQE 286
Query: 272 T---------QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
T + + P++ +AM L+A + RS +A G+ G + +
Sbjct: 287 TGQPSSEYRLALWEKLGHPILTLAMILLAVPFTFSAPRSPGMGSRLAVGVIVGLLTWISY 346
Query: 323 TIMKSFGKS-GILLPVAAALIPVILTISLSILILL 356
IM + G + PVAA +P+ ++ IL+ L
Sbjct: 347 QIMVNLGLLFALSAPVAALGLPMAFVLAALILVYL 381
>gi|53718605|ref|YP_107591.1| putative permease [Burkholderia pseudomallei K96243]
gi|167814687|ref|ZP_02446367.1| putative permease protein [Burkholderia pseudomallei 91]
gi|167909936|ref|ZP_02497027.1| putative permease protein [Burkholderia pseudomallei 112]
gi|52209019|emb|CAH34959.1| putative permease protein [Burkholderia pseudomallei K96243]
Length = 383
Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 RYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQAPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN-------PFVVGSILLGIF 115
IP L+ I VF + SE I R G++ Q L P V+ + L+G F
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEF 120
>gi|332535155|ref|ZP_08410964.1| putative permease [Pseudoalteromonas haloplanktis ANT/505]
gi|332035425|gb|EGI71924.1| putative permease [Pseudoalteromonas haloplanktis ANT/505]
Length = 370
Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 61/323 (18%), Positives = 133/323 (41%), Gaps = 22/323 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA--ATRVPL 61
+++RY LK+ + L M + L I +G+ SI VL+ A ++P
Sbjct: 2 LIFRYLTAEVLKSQVAVFLTLMTIFLSQKLVGI---LGDASEGSIPAKLVLSMIALKLPQ 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P + I+ + + SE+ + +A G+S W ++ ++ S+ L I +
Sbjct: 59 LASLILPLSIFLGIILAYSRIYADSEMTVLKACGVSEWYVVRVTLISSVGLAILAAALTM 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI-----GAKKILPENHIW 176
IA + L +Q K + + + N + +FI G K++ N ++
Sbjct: 119 YIAPWASEQEYQLKEQAKADAGLSALRAGRFQETGNEKAVVFIHNIEKGGKEL---NKVF 175
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ +K + A+ ++ +++V R D + LN +
Sbjct: 176 --VAQLPDSEKGNLARLVYAEQGVVVEAVNGEQQLVLTDGKRYETDGTTPALN----LTE 229
Query: 237 FQKFSEQFASRSFYEIIKKMSF--SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
F +S Q + +K+ +N+ + + Q+ + + IPL + +TL+A +
Sbjct: 230 FDGYSVQIREQEIEHQRRKLEAVPTNQLLAINTPESIAQWQWRLAIPLSIPLLTLLAVPL 289
Query: 295 SLEFSRSNQ-PRIIVAYGIFSGF 316
S+ R + +++ A ++ G+
Sbjct: 290 SVVNPRQGKFAKLVPAISLYLGY 312
>gi|153007032|ref|YP_001381357.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
gi|152030605|gb|ABS28373.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
Length = 358
Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 54 LAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG 113
L A + ++++Q+ P ++ + RT E RA+G+ W+L P ++L G
Sbjct: 50 LYANKTAVVVRQVAPAAMVLGAAIAVSTFRRTREYTAMRALGLGPWRLAGPVAAVTLLAG 109
Query: 114 IFTVLV 119
V+V
Sbjct: 110 AALVVV 115
>gi|332292438|ref|YP_004431047.1| permease YjgP/YjgQ family protein [Krokinobacter diaphorus
4H-3-7-5]
gi|332170524|gb|AEE19779.1| permease YjgP/YjgQ family protein [Krokinobacter diaphorus
4H-3-7-5]
Length = 358
Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 57/290 (19%), Positives = 120/290 (41%), Gaps = 32/290 (11%)
Query: 82 LNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW--K 139
L +E++ + G+S ++ L P+++G+ ++ + + +A K + I ++ K
Sbjct: 80 LANNTEVIAFLSSGVSFYRFLRPYLIGATIVCVGAFFLGTYLAPRANKGYNEFIFEYLKK 139
Query: 140 DNGDKQKSDIIPWMQISNPQQDIFIGA---KKILPENHIWEDFTSITIDKKNKIIHRKDA 196
+ D++ ++ + QI I++ + + N WE F + NK+ ++ A
Sbjct: 140 NKKDRETQNV--YRQIDTGDY-IYVSSFTPRTKTGRNFTWEHF------EGNKMTYKMSA 190
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF-----------SEQFA 245
+ I YN++ + ++ + I +N L K+D F +E +
Sbjct: 191 -IRIRYNEEDTTYTLNSFK--KRTITENGDILESKAKLDTVFNFDMDDLTPVEYIAETLS 247
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ + I K S S+ Y Q + +P+ +T+IA +VS R
Sbjct: 248 TPELRKFIAKEK-SRGSSYISRYEVTLQKRY--SLPVAAYILTIIAVAVS-AMKRRGGMG 303
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
I +A+GI F+ + + + P+ A P IL L++ +L
Sbjct: 304 INLAFGIVLAFVFIFFDKVFGTLAEQSDFPPLVAVWTPNILFAILAVYLL 353
>gi|172036942|ref|YP_001803443.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
gi|171698396|gb|ACB51377.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
Length = 394
Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 54/313 (17%), Positives = 131/313 (41%), Gaps = 36/313 (11%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P + P L+ ++ + L+ SE++ R++G+S+++L+ P ++ +++
Sbjct: 76 KMPGFVSLAFPMAMLLAALMAYSRLSSDSEIIALRSLGVSVYRLIIPVILFGLVVTGCAF 135
Query: 118 LV---INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ--QDIFIGAKKILPE 172
+V I P AT + + + K+++ + P + + Q + + + E
Sbjct: 136 IVNDWIAPAATHEAAVTLQRAVNQERPDFKERNIVYPEYKTVQEEDGQQVTVLTRLFYAE 195
Query: 173 NHIWEDFTSITI-----DKKNKIIHRKDADLAI------IYNDKVKL-------KKVVEY 214
+ + +TI + N+I+ + A I +N + L + +V +
Sbjct: 196 EYNGDKMQGLTILDRTQEGVNQIVTSESATWNISSNTWDFFNGTIYLIAPDGSYRNIVRF 255
Query: 215 QYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF 274
Q+ ++ + + L + Q F+E +++ E +K M S + Q
Sbjct: 256 QHQQLALPRAPLDL-----ANRRQNFTEMTIAQT-QEYLKAMQLSGNEKRVRKVKVRLQE 309
Query: 275 YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG--FMLYTIITIMKSFGKSG 332
+ +P + + ++ A++ + +N+ ++G+ G F Y + + S G G
Sbjct: 310 KY--AMPFVCLIFGVVGAAIGVRPQNTNKA---TSFGVCVGLIFGYYLLAFMSTSLGIWG 364
Query: 333 ILLPVAAALIPVI 345
+L P A +P I
Sbjct: 365 VLTPFLGAWLPNI 377
>gi|311739766|ref|ZP_07713600.1| probable cell division protein [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311304839|gb|EFQ80908.1| probable cell division protein [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 300
Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 33 LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
+ ++ +Q E+ + + + ++ AT V I+ + I LV N+V +RT E I R
Sbjct: 152 VEDVVDQQQEVRDAASNLDSIRNATFVLAIVMSVAA-IFLVANMVQIAAFHRTRETEIMR 210
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLV 119
+G S W PFVV ++L + V++
Sbjct: 211 MVGASRWMTQAPFVVEAVLASLIGVVL 237
>gi|162148705|ref|YP_001603166.1| permease [Gluconacetobacter diazotrophicus PAl 5]
gi|209545528|ref|YP_002277757.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787282|emb|CAP56876.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
gi|209533205|gb|ACI53142.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 377
Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 12/140 (8%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAV-LAATRVPL 61
G+L RY + L GA++L + L ++ L + RGA+ A PL
Sbjct: 15 GVLTRYLTRELAGRILTA--GAILLALMEILALLEQLTPILERHQGLRGALYFMALHAPL 72
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGI---SIWQLLNPFVVGSILLGIFTVL 118
++ I P L+ ++V+ ++ SE+ I RA G+ ++ +L+ P V+G LG+ L
Sbjct: 73 LLGSIFPLAVLIGSLVMLVHMTTASEIAILRAAGLTTPALVRLMLPAVLG---LGLAATL 129
Query: 119 VINPIATSGEKIGIDLIQQW 138
+ + + E + L + W
Sbjct: 130 IDDQVTPRAE---LALARWW 146
>gi|226227979|ref|YP_002762085.1| hypothetical protein GAU_2573 [Gemmatimonas aurantiaca T-27]
gi|226091170|dbj|BAH39615.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 362
Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGE--LPNYSISRGAVLAATRVPLI 62
L RY + + +LG +LVFVIDL + + E LP ++ A+ +P
Sbjct: 9 LDRYIATEFTRIFGVTILGFPVLVFVIDLVDNLRKYTERKLPAKAV---ALSYFYWIPDT 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP-FVVGSILLGIFTVLVIN 121
+ ++P L + R SE+ ++A GIS ++ + P V+ ++ LG+ L
Sbjct: 66 LFMVLPAAVLFATVFSIGTFTRYSEITAAKASGISFYRFIAPILVMATLALGL--DLAFG 123
Query: 122 PIATSGEKIGIDLIQ 136
IA I +DL++
Sbjct: 124 EIAPPANAIRLDLLE 138
>gi|71908693|ref|YP_286280.1| permease YjgP/YjgQ [Dechloromonas aromatica RCB]
gi|71848314|gb|AAZ47810.1| permease YjgP/YjgQ [Dechloromonas aromatica RCB]
Length = 362
Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLL 102
YS+ A+ A +P ++ ++IP TL+ + L R SE+ + RA G++ LL
Sbjct: 47 GYSVVHAALFVALSMPGLVYELIPIATLIGTLYALSTLARHSEITVLRASGLATSDLL 104
>gi|170723396|ref|YP_001751084.1| permease YjgP/YjgQ family protein [Pseudomonas putida W619]
gi|169761399|gb|ACA74715.1| permease YjgP/YjgQ family protein [Pseudomonas putida W619]
Length = 353
Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 14/179 (7%)
Query: 38 NQMGELPN-YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGI 96
++M +L + Y++ P + ++P L+ ++ +L +SEL I RA G+
Sbjct: 34 DEMSDLSDTYTVMDAGWFTLLTAPRRLYDMLPMAALIGCLIGLGSLASSSELTIMRAAGV 93
Query: 97 SI----WQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
SI W ++ P +V ++ + V PI+ + + L Q G+ Q S W
Sbjct: 94 SIGRIVWAVMKPMLVLMLVGLLIGEYV-APISENKAQADRSLAQ---GGGEAQSSKRGMW 149
Query: 153 MQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKV 211
+ Q D F+ + P N + T D + KI+ A A ND L V
Sbjct: 150 HR----QGDEFVHINSVQP-NGLLLGVTRYRFDDERKIVTSSFARRARYENDHWVLSDV 203
>gi|297171743|gb|ADI22735.1| predicted permeases [uncultured verrucomicrobium HF0500_27H16]
Length = 412
Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 69/357 (19%), Positives = 135/357 (37%), Gaps = 57/357 (15%)
Query: 23 GAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV--PLIIQQIIPFITLVVNIVVFF 80
GA++ +F I + + +G+L + +L + P ++ ++P LV + +
Sbjct: 67 GAILGLFYI--QNLYDNLGDLLEHGAGAAEILQYYLILTPALLSPVLPLSVLVATLFSYG 124
Query: 81 NLNRTSELVISRAIGISIWQLL--NPFVVG--SILLGIFTVLVINPIATSGEKIGIDLIQ 136
+L+R E+ R++G S+W L+ N F+ S+ L + ++ A + +L+Q
Sbjct: 125 SLHRNQEITAMRSMGRSVWSLMRVNMFLAALLSVGLFLLGNGGLSKSAEKSREFYEELMQ 184
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH---------------IWEDFTS 181
D + + I + N + P H E FTS
Sbjct: 185 PPFDPASAEVA-TIKHLTFENASSHRLWVMNRYDPSKHKGHGVYLYLRYVSGKARERFTS 243
Query: 182 ITID----------KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
T + ++ + + +A L++ + D +LK L P
Sbjct: 244 RTAEFMPETATWVFREGRQVFFDEAGLSLRFVDFEELKM---------------EGLESP 288
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + QK + + S E+ + S R +++ + P + L+
Sbjct: 289 LTLLARQK---KLSDLSLRELRELAEVSQGGQGSEARRYGVRYHQALAGPFNCMLALLVG 345
Query: 292 ASVSLEFSRSNQPRIIV--AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
++ +R N P + A GIF G+ L + M G+ GIL P A +P+ L
Sbjct: 346 VPFAIAGTRVN-PMVGATKAIGIFVGYFLLGGASRM--LGQQGILEPAVAGWLPMGL 399
>gi|218961270|ref|YP_001741045.1| putative Permease YjgP/YjgQ [Candidatus Cloacamonas
acidaminovorans]
gi|167729927|emb|CAO80839.1| putative Permease YjgP/YjgQ [Candidatus Cloacamonas
acidaminovorans]
Length = 442
Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA--ATRVPL 61
IL RY K ++ F + M++ FV+ + I + M + + V +P
Sbjct: 3 ILKRYLLKEHIAP---FFIALMVVTFVLLSDRIIDLMNLIIEKKLPWQTVFEVFGLSLPY 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
++ IP LV I+ F ++ E+ ++ GI+++ L+ P V+ ++LL
Sbjct: 60 MLALSIPMAVLVATILAFGRMSVDREITAIKSSGINVYSLIGPLVIAALLL 110
>gi|297620917|ref|YP_003709054.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
86-1044]
gi|297376218|gb|ADI38048.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
86-1044]
Length = 359
Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYF K LKT + L +ID S A L +
Sbjct: 8 RYFIKETLKTFFFISFCFYGLYVLIDYASHSGARHHQSMMEWSELIKFYANEWILRADVL 67
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF-----TVLVIN 121
+PF ++ I +LN +ELV +A GIS+ ++L PF+ +L + L+ N
Sbjct: 68 VPFALMIATIRTLCDLNIHNELVALQASGISLKKILRPFIFLGLLFTLLIYANTEFLLPN 127
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQ 145
+A S IQ K+N +K+
Sbjct: 128 AMAASRHLRNQKEIQ--KNNKNKK 149
>gi|255535566|ref|YP_003095937.1| hypothetical protein FIC_01427 [Flavobacteriaceae bacterium
3519-10]
gi|255341762|gb|ACU07875.1| membrane protein, putative [Flavobacteriaceae bacterium 3519-10]
Length = 484
Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 20 FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA--ATRVPLIIQQIIPFITLVVNIV 77
FL +L F+ +N I Q+ + +S +L A ++Q ++P L+ +I+
Sbjct: 17 FLFIFSVLFFIFVVNIIWIQLAQFTGKGLSYWEILKLLAYLSVKVVQLVLPLTILLSSIM 76
Query: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
F + EL +A GIS+ +++ P V SI L F L N +
Sbjct: 77 TFGDFGERYELAAMKAAGISLTRIMMPLFVVSIALSFFLFLFSNNV 122
>gi|308272621|emb|CBX29225.1| hypothetical protein N47_J02060 [uncultured Desulfobacterium sp.]
Length = 409
Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 77/379 (20%), Positives = 159/379 (41%), Gaps = 36/379 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSIS--RGAVLAATRVPL 61
I+ RY FK L F + + F+ + +I + NY++S + ++ +P
Sbjct: 21 IVSRYLFKEILSP---FAINTLFFTFLFLMAKILFITNLVVNYNMSLPKIGLMLLYIIPN 77
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFV----VGSILLGIFTV 117
+ +IP ++ ++ F + +E++ + GISI+ LL P + +G IL + ++
Sbjct: 78 FLVFVIPMSVMMAILLTFLRFSSDNEIIALKTGGISIYGLLPPVLIFCFIGCILTFLISL 137
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKS------DIIPWMQISNPQQDIFIGAKKILP 171
I S EK+ +++ Q + G K+++ DI+ ++ + ++D I +
Sbjct: 138 YAIPWGRLSIEKLTMEIAQSNFEIGLKERTFNDNFKDIMLYVNKVDLKKDELI---DVFV 194
Query: 172 ENHIWEDFTSITIDKK-------NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN 224
E+ ED S I K N++ R +I K K V I D
Sbjct: 195 EDGRSEDMASTIIAPKGVLLFEENRLSFRLRLYDGVINQVNTKNKSV-----NSIGFDTY 249
Query: 225 STTLNIPIKMDGFQKFSEQFASRS--FYEIIKKM-SFSNKSNIFHNYRAETQFYFLIVIP 281
L++ +K ++ + FYE++ + SF K++ ++N E F +
Sbjct: 250 DINLDLKNAFSEMEKTGQRKNEKKMYFYELLDYIDSFKIKNSRYYNALFELHKKFSVPFA 309
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
++ + +A L +S + G+ + Y I+++ + G++G P
Sbjct: 310 CFVLGILSVALGTQL---KSATRSFGLGLGLIFFLLYYLILSVGYALGETGFYPPFIGMW 366
Query: 342 IPVILTISLSILILLQKED 360
P IL S+ I + ++ +
Sbjct: 367 APNILIGSIGIYLFIRTAN 385
>gi|312142844|ref|YP_003994290.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
gi|311903495|gb|ADQ13936.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
Length = 1063
Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
R+P ++ + P L + LNR +E+ R G+SI++L+ P + +L+ FT
Sbjct: 58 RLPGVMVETFPIAVLFATMTAINRLNRENEITALRMGGVSIFRLVLPLFILGLLISSFTF 117
Query: 118 LV 119
L+
Sbjct: 118 LL 119
>gi|296118847|ref|ZP_06837423.1| cell division protein FtsX [Corynebacterium ammoniagenes DSM 20306]
gi|295968336|gb|EFG81585.1| cell division protein FtsX [Corynebacterium ammoniagenes DSM 20306]
Length = 300
Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
Q I I L+ N+V NR++E+ I R +G S W PFV+ ++L + V++
Sbjct: 183 QAIAAIFLIANMVQIAAFNRSTEIGIMRMVGASRWITQAPFVLEAVLASVIGVIL 237
>gi|294341187|emb|CAZ89588.1| putative permease YjgP/YjgQ [Thiomonas sp. 3As]
Length = 365
Score = 36.2 bits (82), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
R+ + L L + L+F ID LN++ N +G+ P +S+S + A +P +
Sbjct: 6 RFLLLHVLSAVGLVTLAFLALLFFIDMLNDLSN-LGK-PGFSLSGTLLHVALSMPSRAYE 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGIS 97
++P TLV + +L +SE I R G+S
Sbjct: 64 VLPIATLVGGVFALASLAASSEFTILRISGLS 95
>gi|296137010|ref|YP_003644252.1| permease YjgP/YjgQ family protein [Thiomonas intermedia K12]
gi|295797132|gb|ADG31922.1| permease YjgP/YjgQ family protein [Thiomonas intermedia K12]
Length = 365
Score = 36.2 bits (82), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
R+ + L L + L+F ID LN++ N +G+ P +S+S + A +P +
Sbjct: 6 RFLLLHVLSAVGLVTLAFLALLFFIDMLNDLSN-LGK-PGFSLSGTLLHVALSMPSRAYE 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGIS 97
++P TLV + +L +SE I R G+S
Sbjct: 64 VLPIATLVGGVFALASLAASSEFTILRISGLS 95
>gi|154246777|ref|YP_001417735.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
gi|154160862|gb|ABS68078.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
Length = 405
Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P ++ I P + LN SE+V+ + G+ W+LL P ++ ++L+ F L
Sbjct: 57 MPTLVLVIAPAALFIATAYTLLKLNGDSEIVVMASAGMGPWRLLRPLIILALLVSAFCAL 116
Query: 119 V 119
+
Sbjct: 117 L 117
>gi|83952306|ref|ZP_00961038.1| Predicted permease [Roseovarius nubinhibens ISM]
gi|83837312|gb|EAP76609.1| Predicted permease [Roseovarius nubinhibens ISM]
Length = 372
Score = 36.2 bits (82), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 54 LAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVV-GSILL 112
L A +P +I ++P + V L+ SEL + +A G S W+L P ++ G I+
Sbjct: 45 LTALTLPGVIAVVLPIAGFAGAVYVTNRLSTESELTVMQATGYSPWRLARPVLIYGVIVA 104
Query: 113 GIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE 172
+ ++L + TS ++ + ++ K ++ + +P + ++I PE
Sbjct: 105 AMMSLLTHVLVPTSLHRLETRKAEVSRNVTAKLLTE----GEFLHPAGGVTFYIREITPE 160
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKV 206
+ + F S R+D +IY K+
Sbjct: 161 GELRDVFLS----------DRRDIQAPVIYTSKM 184
>gi|222054621|ref|YP_002536983.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
gi|221563910|gb|ACM19882.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
Length = 389
Score = 35.8 bits (81), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 85/390 (21%), Positives = 164/390 (42%), Gaps = 74/390 (18%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR-- 58
M L+RY FK + F LG FV+ + ++ L + +++G L
Sbjct: 1 MNSTLYRYIFK---EIPPPFFLGVATFTFVL----LMGRLLRLTDMVVTKGVPLGDVLRM 53
Query: 59 ----VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI 114
+P + IP L+ ++ F L+ SE++ +A GIS++ LL P +
Sbjct: 54 ILYLLPSFLLVTIPMAFLLAILLAFGRLSGDSEIIAMKASGISLYGLLPP---------V 104
Query: 115 FTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
F++ VI +A G I I + + G+ D++ ++ + + +G K E
Sbjct: 105 FSLAVITYLA--GAFITIYAVPK----GNSAFKDLL----VTVVENRVSLGVK----EKV 150
Query: 175 IWEDFTSITI-----DKKNKIIHRKDADLAIIYNDKVKLK-KVVEYQYGRIPIDKNSTTL 228
DF I I D++ +++ II +++ L+ + +G I D S ++
Sbjct: 151 FNGDFPGIVIYCDGYDERTQVMSG-----IIIQDERDPLEPSTIMAGHGTINADHASRSV 205
Query: 229 NIPIK---------MDGFQ--KFSE-------QFASRSFYEIIKKMSFSN-----KSNIF 265
+ + +G++ +FS+ AS++ + MS + SN F
Sbjct: 206 RLHLASGSIHRTAGREGYRLVQFSDYDLHINLSQASQAVKRDERDMSLAELRTNWNSNHF 265
Query: 266 HNY-RAET--QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
N R E +++ +P + TL+ + ++ RS + A IF + Y I+
Sbjct: 266 DNKGRLEMRLEYHRRFSLPFACLIFTLVGMPLGIQNQRSGKAAGF-AISIFLLLLYYIIL 324
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ K+ G+ +L P AA +P +L ++ I
Sbjct: 325 SACKTLGEKELLNPFLAAWVPNMLFVAFGI 354
>gi|282915635|ref|ZP_06323406.1| concentrative nucleoside transporter [Staphylococcus aureus subsp.
aureus D139]
gi|282320451|gb|EFB50790.1| concentrative nucleoside transporter [Staphylococcus aureus subsp.
aureus D139]
Length = 406
Score = 35.8 bits (81), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 15/143 (10%)
Query: 31 IDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVI 90
I +N+I +MG L +Y A+ V L I+ IIP ++ + + + I
Sbjct: 122 ITINKI-TRMGRLESYFAISTAMFGQPEVYLTIKDIIPKLSRAK----LYTIATSGMSAI 176
Query: 91 SRAIGISIWQLLNP-FVVGSILLGIFTVL----VINPIATSGEKIGIDLIQQWKD----N 141
S A+ S Q++ P FVV +++L IF+ L VINP + + ID + + + N
Sbjct: 177 SMAMLGSYMQMIEPKFVVTAVMLNIFSALIIASVINPYKSDDTDVEIDNLTKSTETKTLN 236
Query: 142 GDKQKSDIIPWMQ-ISNPQQDIF 163
G K + + Q I + D F
Sbjct: 237 GKTGKPKKVAFFQMIGDSAMDGF 259
>gi|254424599|ref|ZP_05038317.1| putative permease, YjgP/YjgQ family [Synechococcus sp. PCC 7335]
gi|196192088|gb|EDX87052.1| putative permease, YjgP/YjgQ family [Synechococcus sp. PCC 7335]
Length = 397
Score = 35.8 bits (81), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 68/319 (21%), Positives = 127/319 (39%), Gaps = 65/319 (20%)
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL-GI-FTV-LVINPIA 124
P TL+ ++ + + SEL+ R G+SI +++ P V+ S+L+ G+ F+V +I P +
Sbjct: 89 PMSTLLATMMTYSRFSSDSELIAMRGCGVSINRIVAPAVILSLLVTGLSFSVNEIIAPAS 148
Query: 125 TSGE---------------KIGIDLIQQWKDNGDKQKSDIIPWMQISN------------ 157
T + G + QQ + D +++ + N
Sbjct: 149 TERAALLLARALDDEKPPFREGNIVFQQQEPAADGSGDELVRFFYARNFDGTTMRDITVV 208
Query: 158 --PQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLA---IIYNDKVKLKKVV 212
Q+D G K+I+ + DFT + N I+ + II DK L
Sbjct: 209 DFSQEDSEDGLKQIVSADAATWDFTRNLWEFTNGTIYAVSPTGSFRQIIRFDKQDL---- 264
Query: 213 EYQYGRIPID-KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE 271
Q R P+D N T + + +++ + ++K++ + I Y
Sbjct: 265 --QLPRTPLDLANRTKKQEEMNIAETKEYLTILQQTGDEKAVRKLAVA----IQRKY--- 315
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI----FSGFMLYTIITIMKS 327
IP V L+ A+V + R+ + ++GI G+ L + IT +
Sbjct: 316 -------AIPFACVVFGLVGAAVGVRPQRTGK---ATSFGISVVIIFGYYLLSFIT--SA 363
Query: 328 FGKSGILLPVAAALIPVIL 346
G+SG++ P A +P+ +
Sbjct: 364 MGESGVITPFLAGWVPLFI 382
>gi|114768924|ref|ZP_01446550.1| Predicted permease [alpha proteobacterium HTCC2255]
gi|114549841|gb|EAU52722.1| Predicted permease [alpha proteobacterium HTCC2255]
Length = 407
Score = 35.8 bits (81), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 37/224 (16%)
Query: 5 LWRYFFKYYLKTTLYFLL---GAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY FK + +F G ++L + + +I + G+ P Y + + L +V +
Sbjct: 36 LDRYLFKQLIGPFAFFCFIISGILLLNQALGIIDIVTENGQ-PAYIVFELSFLILPKVLI 94
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI- 120
I FI V+ I +N EL++ +IG S +L PF++ IL+ LV+
Sbjct: 95 TAISISGFIASVLIINRLYN---EEELLVMMSIGRSFIELSKPFLLFGILIASLLFLVVH 151
Query: 121 --NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI--------FIGAK--- 167
NP A S ++ + ++ K + + QI P Q I F G K
Sbjct: 152 NLNPYAHS----------KFIEAQERIKKEYVT--QIIKPDQFISYQNKYTFFFGDKGNN 199
Query: 168 ----KILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK 207
+IL E I D T I K ++I KD++ ++ N +
Sbjct: 200 GELSEILIEEQITPDTTLTHIAKNGQVIANKDSNALLLRNGSTQ 243
>gi|269121333|ref|YP_003309510.1| permease YjgP/YjgQ family protein [Sebaldella termitidis ATCC
33386]
gi|268615211|gb|ACZ09579.1| permease YjgP/YjgQ family protein [Sebaldella termitidis ATCC
33386]
Length = 364
Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSIL---LGIF 115
VP ++ Q IP + ++ + N + T+E++ + G S++++ P ++ IL LG+F
Sbjct: 57 VPGVLTQTIPMGAFLGVMLTYGNFSETNEIIAIESAGTSLFRITRPAIIFGILLTVLGLF 116
Query: 116 TVLVINPIA 124
+ +NP A
Sbjct: 117 MEIEVNPRA 125
>gi|332991780|gb|AEF01835.1| permease YjgP/YjgQ [Alteromonas sp. SN2]
Length = 366
Score = 35.8 bits (81), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 129/321 (40%), Gaps = 62/321 (19%)
Query: 4 ILWRYFFKYYLKTTL--YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA--ATRV 59
+++RY K LK+ L +F+L A+ + +G+ + I G VL
Sbjct: 2 LIFRYLLKETLKSQLAIFFILMAIFVTL-----RFVRVLGDASDGDIPAGLVLGFLGLYA 56
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT--- 116
P++ ++P + ++ L SE+ + RA GIS W + + S+L+ I T
Sbjct: 57 PILASLVLPISAYLGIMLAHGRLYVDSEMTVMRACGISEWYITRVMLFLSVLIMIVTGAI 116
Query: 117 VLVINPIATSGEKIGIDLIQQWKDNGDKQK--SDIIP--WMQISNPQQDIFIGAKKILPE 172
L P+A E Q ++ + S IIP + Q N + IF+ I +
Sbjct: 117 TLYFAPMAAENE-------YQLREKARNEAGLSAIIPGRFQQTGNAKAVIFV--HDIDTD 167
Query: 173 NHIWEDFTS--ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---T 227
+ + F S T + +N++ +VV Q G++ + + T
Sbjct: 168 DQLRRVFLSQNKTENGENQV-------------------QVVYAQTGQVASNPDGTRNLV 208
Query: 228 LNIPIKMDG-----------FQKFSEQFASRSFYEIIKKMSFSNKSNIF--HNYRAETQF 274
L ++ +G F ++ Q A + E +K+S + ++ + A +
Sbjct: 209 LKQGVQYEGQQSQKSYRKVEFDEYQIQIADKPAEEARRKVSVLPTTELWGDESIEARAEL 268
Query: 275 YFLIVIPLMLVAMTLIAASVS 295
+ I IPL L + LIA +S
Sbjct: 269 QWRIAIPLSLPFLILIAVPLS 289
Searching..................................................done
Results from round 2
>gi|255764469|ref|YP_003064807.2| putative permease protein [Candidatus Liberibacter asiaticus str.
psy62]
gi|254547820|gb|ACT56867.2| putative permease protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 361
Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats.
Identities = 361/361 (100%), Positives = 361/361 (100%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP
Sbjct: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI
Sbjct: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT
Sbjct: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF
Sbjct: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR
Sbjct: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED
Sbjct: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
Query: 361 G 361
G
Sbjct: 361 G 361
>gi|15964906|ref|NP_385259.1| hypothetical protein SMc00583 [Sinorhizobium meliloti 1021]
gi|307300976|ref|ZP_07580745.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
gi|307317711|ref|ZP_07597149.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
gi|15074085|emb|CAC45732.1| Hypothetical, transmembrane protein [Sinorhizobium meliloti 1021]
gi|306896473|gb|EFN27221.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
gi|306903931|gb|EFN34517.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
Length = 360
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 142/361 (39%), Positives = 216/361 (59%), Gaps = 2/361 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ L RYFFK Y +TT +FL+G L+F+ID +E+ ++M LP+Y++S ++ R+P
Sbjct: 2 IFNTLGRYFFKRYARTTFWFLVGIFALIFIIDFSELTSRMSNLPHYTVSGALLMTTFRIP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+QQ +PF+ L + +LNR ELV++RA GIS+WQ L PFVVG++L G+ V+VI
Sbjct: 62 TILQQTVPFVALFAAMAALISLNRRYELVVTRAAGISVWQFLRPFVVGALLFGVLAVVVI 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
NP+A G K L +W + ++ IPW++ D IGA+ + + T
Sbjct: 122 NPLAAWGTKKAEALEAEW-GSTRSAAANSIPWLRQIYDGTDTIIGARSVQNGGTELINVT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
I D + I R+DA A + + L VVE + GR+P + L +K D Q+
Sbjct: 181 VIHFDPQGAITLRQDAKSAKLEDGYWLLNGVVETEVGRLPRRMETAQLRTNLKPDFVQER 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S F+++ +K+ + +S F ETQF+ L+ +PL+LVAMTLIAA VSL+FSR
Sbjct: 241 LAKADSIQFFDLPRKIEVA-RSFGFSTNGLETQFHSLMSLPLLLVAMTLIAACVSLKFSR 299
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
NQ R ++ GI SGF+LY + ++K+FG SGI+ P AA +PV++ ++L ILL +ED
Sbjct: 300 FNQSRSVILGGILSGFVLYVVTVLVKAFGSSGIVPPFVAAWLPVVVAMALGSTILLHQED 359
Query: 361 G 361
G
Sbjct: 360 G 360
>gi|150395988|ref|YP_001326455.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
gi|150027503|gb|ABR59620.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
Length = 360
Score = 370 bits (950), Expect = e-100, Method: Composition-based stats.
Identities = 140/361 (38%), Positives = 215/361 (59%), Gaps = 2/361 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ L RYFFK Y +TT +FL+G L+F+ID +E+ ++M LP+Y++S ++ R+P
Sbjct: 2 IFNTLGRYFFKRYARTTFWFLIGIFALIFIIDFSELTSRMSNLPHYTVSGALLMTTFRIP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+QQ +PF+ L + +LNR ELV++RA GIS+WQ L PFVVG+++ G V+VI
Sbjct: 62 TILQQTVPFVALFAAMAALISLNRRYELVVTRAAGISVWQFLRPFVVGALIFGALAVVVI 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
NP+A G K L +W + ++ IPW++ D IGA+ + + T
Sbjct: 122 NPLAAWGTKKAEALEAEW-GSTRSAAANSIPWLRQIYDGTDTIIGARSVQNGGTELINVT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
I D + I R+DA A + + L VVE + GR+P + L ++ D Q+
Sbjct: 181 VIHFDPQGAITLRQDAKSAKLEDGYWLLNGVVETEVGRLPRRMETAQLRTNLRPDFVQER 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S F+++ +K+ + +S F ETQF+ L+ +PL+LVAMTLIAA VSL+FSR
Sbjct: 241 LAKADSIQFFDLPRKIEVA-RSFGFSTNGLETQFHSLMSLPLLLVAMTLIAACVSLKFSR 299
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
NQ R ++ GI SGF+LY + ++K+FG SGI+ P AA +PV++ ++L ILL +ED
Sbjct: 300 FNQSRSVILGGILSGFVLYVVTVLIKAFGSSGIVPPFVAAWLPVVVAMALGSTILLHQED 359
Query: 361 G 361
G
Sbjct: 360 G 360
>gi|222085452|ref|YP_002543982.1| permease protein [Agrobacterium radiobacter K84]
gi|221722900|gb|ACM26056.1| permease protein [Agrobacterium radiobacter K84]
Length = 361
Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats.
Identities = 143/361 (39%), Positives = 215/361 (59%), Gaps = 1/361 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ L RYFF Y+ TTL+F LG LV++ID +E ++ LP Y++ G ++ A R+P
Sbjct: 2 IFSTLGRYFFTRYIITTLWFFLGVTSLVYLIDFSETAGRLAGLPGYTVKIGLLMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+QQ +PFI L V + V LNR ELVI+RA GIS+WQ + PFVVG+ +G+ T+L +
Sbjct: 62 FIMQQTVPFIALFVGMTVLIALNRRRELVIARAAGISVWQFMTPFVVGAFCVGLLTMLAL 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
NP+A G++ + + + + + IPW++ S+ + DI IGAK +L +
Sbjct: 122 NPVAAWGQRQAETMEADLRGDPSYRNTLSIPWLRQSDGKSDIIIGAKAVLDNGTTLMNVV 181
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
I D + II R+DA A + N L VVE G IP K++T + +K D +
Sbjct: 182 FIHFDSQGNIILRQDAQSAKLENGYWLLNSVVERAPGEIPAHKSTTQVRTNLKQDFVSER 241
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
Q + +FY++ +++ + KS ETQF+ L+ P +LVAMTLIAA+VSL+FSR
Sbjct: 242 LAQPETIAFYDLSNRIAIA-KSFGISTKALETQFHSLLSQPFLLVAMTLIAATVSLKFSR 300
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
NQ R ++ GI SGF+LY + ++K+FG SG++ P A IPVI+ ++ ILL +ED
Sbjct: 301 FNQSRSVILGGILSGFVLYVVTVLVKAFGSSGVVPPFVATWIPVIVALAFGATILLHQED 360
Query: 361 G 361
G
Sbjct: 361 G 361
>gi|325292486|ref|YP_004278350.1| permease protein [Agrobacterium sp. H13-3]
gi|325060339|gb|ADY64030.1| putative permease protein [Agrobacterium sp. H13-3]
Length = 362
Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats.
Identities = 142/362 (39%), Positives = 220/362 (60%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ L RYF K YL T ++FLLG ++++ D +E +M +P YS+ L A R+P
Sbjct: 2 IFSTLARYFLKRYLITAIWFLLGVSAIIYLADFSETARRMSSVPGYSVPGALGLTALRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ IPFI L V + +LNR ELV++RA G+S WQ + PFV+G++ LGI +VLV+
Sbjct: 62 LILQQTIPFIALFVGMTTLISLNRRYELVVTRAAGVSAWQFILPFVLGAVFLGILSVLVL 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGD-KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NPIA G+ + + W++ G ++ DIIPWM+ S+ QD IGAK + D
Sbjct: 122 NPIAAWGQNRSLSMEAGWRNEGSGGRQQDIIPWMRQSSGGQDTIIGAKSFEDNGTMLLDV 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I +DK I+ R+DA A + + L V E + G +P+ + ST ++ ++ + Q+
Sbjct: 182 VLIHLDKDGNIVSRQDAKSAKLEDGYWLLNGVAETRAGHVPVRQESTRISTNLRREFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + +F+++ K+ + KS + ETQ++FL+ PL+LVAMTLIAA+VSL+FS
Sbjct: 242 RMTQTETVAFFDLSHKIEVA-KSFGLSSKALETQYHFLLSTPLLLVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R Q R ++ GI SGF+LY + ++++FG G++ P A +PVI+ ++L ILL +E
Sbjct: 301 RFAQSRSVILGGIVSGFVLYVVTVLVRAFGSGGVVPPTVAVWVPVIVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|218460846|ref|ZP_03500937.1| putative permease protein [Rhizobium etli Kim 5]
Length = 362
Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats.
Identities = 148/362 (40%), Positives = 218/362 (60%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ YL TT +FL+GA + F++D +E +M LP Y+I G V+ A R+P
Sbjct: 2 MFGTLSRYFFRRYLATTAWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ IPF+ L V + V LNR ELV++RA GIS+WQ + PFV GS+ LG+ T +
Sbjct: 62 LILQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFVAGSLALGVLTTTAL 121
Query: 121 NPIATSGEKIGIDLIQQWKD-NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ N +K+ IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLVDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGRVIMRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + KS ETQF L+ PL+LVAMTLIAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|86357091|ref|YP_468983.1| putative permease protein [Rhizobium etli CFN 42]
gi|86281193|gb|ABC90256.1| putative permease protein [Rhizobium etli CFN 42]
Length = 362
Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats.
Identities = 147/362 (40%), Positives = 219/362 (60%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ YL TT +FL+GA + F++D +E +M LP Y+I G V+ A R+P
Sbjct: 2 MFGTLSRYFFRRYLATTGWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ IPF+ L V + V LNR ELV++RA GIS+WQ + PF+ GS++LG+ T +
Sbjct: 62 LILQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLVLGVLTTTAL 121
Query: 121 NPIATSGEKIGIDLIQQWKD-NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ N +K+ IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + KS ETQF L+ PL+LVAMTLIAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|327188011|gb|EGE55241.1| putative permease protein [Rhizobium etli CNPAF512]
Length = 362
Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats.
Identities = 147/362 (40%), Positives = 218/362 (60%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ YL TT +FL+GA + F++D +E +M LP Y+I G V+ A R+P
Sbjct: 2 MFGTLSRYFFRRYLATTGWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ IPF+ L V + V LNR ELV++RA GIS+WQ + PF+ GS+ LG+ T +
Sbjct: 62 LILQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGVLTTTAL 121
Query: 121 NPIATSGEKIGIDLIQQWKD-NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ N +K+ IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + KS ETQF L+ PL+LVAMTLIAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|190891135|ref|YP_001977677.1| permease [Rhizobium etli CIAT 652]
gi|190696414|gb|ACE90499.1| putative permease protein [Rhizobium etli CIAT 652]
Length = 362
Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats.
Identities = 146/362 (40%), Positives = 218/362 (60%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ Y+ TT +FL+GA + F++D +E +M LP Y+I G V+ A R+P
Sbjct: 2 MFGTLSRYFFRRYVATTGWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ IPF+ L V + V LNR ELV++RA GIS+WQ + PF+ GS+ LG+ T +
Sbjct: 62 LILQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGVLTTTAL 121
Query: 121 NPIATSGEKIGIDLIQQWKD-NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ N +K+ IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + KS ETQF L+ PL+LVAMTLIAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|241203948|ref|YP_002975044.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240857838|gb|ACS55505.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 362
Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats.
Identities = 144/362 (39%), Positives = 218/362 (60%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ YL TT +FL+G + F++D +E +M LP Y+I G ++ A R+P
Sbjct: 2 MFGTLSRYFFRRYLVTTGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGVLMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ +PFI L V + V LNR ELV++RA GIS+WQ + PF+ GS++LG+ T+ +
Sbjct: 62 LILQQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLVLGLLTMAAL 121
Query: 121 NPIATSGEKIGIDLIQQWKD-NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ N +K+ IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQESGTKLIDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGQVILRQDAATAKLEDGYWQLNNVVERKPGEIPVRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + KS ETQF L+ PL+LVAMT IAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTFIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|116251334|ref|YP_767172.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115255982|emb|CAK07063.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 362
Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats.
Identities = 144/362 (39%), Positives = 217/362 (59%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ YL TT +FL+G + F++D +E +M LP Y+I G ++ A R+P
Sbjct: 2 MFGTLSRYFFRRYLVTTGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGVLMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ +PFI L V + V LNR ELV++RA GIS+WQ + PF+ GS+ LG+ T+ +
Sbjct: 62 LILQQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGLLTMAAL 121
Query: 121 NPIATSGEKIGIDLIQQWKD-NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ N +K+ IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGQVILRQDAATAKLEDGYWQLNTVVERKPGEIPVRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + KS ETQF L+ PL+LVAMT IAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTFIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|15888447|ref|NP_354128.1| hypothetical protein Atu1107 [Agrobacterium tumefaciens str. C58]
gi|15156139|gb|AAK86913.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 362
Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats.
Identities = 139/362 (38%), Positives = 219/362 (60%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ L RYF K YL TT++F+LG ++++ D +E +M LP YS+ L A R+P
Sbjct: 2 IFNTLARYFLKRYLMTTIWFVLGVSSIIYLADFSETARRMSGLPGYSVPAALGLTALRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ +PFI L V + +LNR ELV++RA GIS WQ + PFV+G++ +GI +V+V+
Sbjct: 62 LILQQTVPFIALFVGMTTLISLNRRYELVVTRAAGISAWQFILPFVLGAVFIGILSVMVL 121
Query: 121 NPIATSGEKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NPIA G+ + + + D G ++ +IIPWM+ S+ +D IGAK + D
Sbjct: 122 NPIAAWGQNKSLAMEAGLRNDAGGGRQQEIIPWMRQSSGGKDTIIGAKSFEDNGTMLLDV 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I +DK I+ RKDA A + + L V E + G +P+ + S ++ ++ + Q+
Sbjct: 182 VLIDVDKDGNIVSRKDAKSAKLEDGYWLLNGVSETRAGHVPVRQESMQISTNLRREFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + +F+++ K+ + KS + ETQ++FL+ PL+LVAMTLIAA+VSL+FS
Sbjct: 242 RMTQTETVAFFDLSHKIEVA-KSFGLSSKALETQYHFLLSTPLLLVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R Q R ++ GI SGF+LY + ++++FG G++ P A +PVI+ ++L ILL +E
Sbjct: 301 RFAQSRSVILGGIVSGFVLYVVTVLVRAFGSGGVVPPTVAVWVPVIVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|209548670|ref|YP_002280587.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534426|gb|ACI54361.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 362
Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats.
Identities = 142/362 (39%), Positives = 216/362 (59%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ Y+ T +FL+G + F++D +E +M LP Y+I G ++ A R+P
Sbjct: 2 MFGTLSRYFFRRYMVTMGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGILMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ +PFI L V + V LNR ELV++RA GIS+WQ + PF+ GS++LG+ T+ +
Sbjct: 62 LILQQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLILGLLTMTAL 121
Query: 121 NPIATSGEKIGIDLIQQWKD-NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ N +K+ IPW++ + + D+ IGA + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAHTVQENGTKLIDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGQVILRQDAATAKLEDGYWQLNNVVERKPGEIPMRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + KS ETQF L+ PL+LVAMT IAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTFIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A IP+I+ ++L ILL +E
Sbjct: 301 RFNQSRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPMIVALALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|319408319|emb|CBI81972.1| conserved membrane hypothetical protein [Bartonella schoenbuchensis
R1]
Length = 363
Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats.
Identities = 123/364 (33%), Positives = 199/364 (54%), Gaps = 4/364 (1%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RYFF Y+KTT YF+L IL +ID E ++ LP+Y+ +++A RV
Sbjct: 1 MIGWTLGRYFFVRYIKTTCYFVLSIFILALLIDFTENSGRLASLPHYTAKGALLISALRV 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I+QQ+ PFI L + + +LN+ ELV++R+IG+S WQ L P +G+ L G+F++L
Sbjct: 61 PFIMQQLFPFIALFSAMTMLISLNKKFELVVARSIGVSAWQFLIPACLGAFLFGLFSILF 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQK--SDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
INP+A G +I +W+ N + + IPW+ IGA+ I +
Sbjct: 121 INPLAAWGSSQAEKMIAEWRSNNVQTSINKNRIPWLTQHTNLGTTTIGARSITQQGLSLI 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
D T + + + + A A + ND L Y+ G +P + +K +
Sbjct: 181 DATFVQYNDNATVKNWIHAKQATLTNDAWLLTNGTIYKTGYVPEKFTEFRIKTNLKPEFL 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ A+ FY++ +K+S + +S + + + LI +P +LVAMTLIAA+VSL+
Sbjct: 241 TEYLADPATIPFYKLPRKIS-AARSFGYSANKFDMYLQSLIALPALLVAMTLIAATVSLK 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F+R Q + ++ G+ +GFMLY I ++++FG +G + PV AA PV++ + + LL
Sbjct: 300 FTRFGQSKALILGGVIAGFMLYVISVLVQAFGNAGYIPPVIAAWTPVVIALFFGVSFLLH 359
Query: 358 KEDG 361
KEDG
Sbjct: 360 KEDG 363
>gi|49474100|ref|YP_032142.1| hypothetical protein BQ04620 [Bartonella quintana str. Toulouse]
gi|49239604|emb|CAF25961.1| Hypothetical transmembrane protein [Bartonella quintana str.
Toulouse]
Length = 364
Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats.
Identities = 120/365 (32%), Positives = 190/365 (52%), Gaps = 5/365 (1%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RYFF YLK T YF +L F+ID E +++ LP+Y+ +++ R+
Sbjct: 1 MIGWTLGRYFFVRYLKMTCYFFGSIFVLAFLIDFTENSSRLSYLPSYTAKDAFLISVLRI 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I+QQ+IPFI L + + +LNR ELV++R+IG+S WQ L P G+ L G+F++L+
Sbjct: 61 PFIMQQLIPFIALFSAMAMLISLNRKCELVVTRSIGVSAWQFLMPACFGAFLFGLFSILL 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQK---SDIIPWMQISNPQQDIFIGAKKILPENHIW 176
+NP+A G + +W+ N + IIPW+ IGAK I +
Sbjct: 121 VNPLAAWGFSQAEKMTTEWRSNNVLTSFHNTRIIPWLTQRTNSDRTTIGAKSITDQGLSL 180
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
D T + + + + + A + N L Y+ G P + +K +
Sbjct: 181 IDATFVQYNDNATVKNWINTRKATLTNGVWLLTNGTIYKIGHPPEKFTEFQIKTNLKPEF 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ A+ FY++ KK+ + +S + + LI +P +L+AMTLIAA+VSL
Sbjct: 241 LTERLANPATIPFYQLPKKIMIA-RSFGYSANNFDMYLQSLIALPALLIAMTLIAATVSL 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
F+R Q ++ G+ +GF LY I ++++FG +G + P+ AA PVI+ + L I LL
Sbjct: 300 NFTRFGQSGTLIFGGVIAGFTLYVISVLVQAFGNAGYMPPIIAAWTPVIIALFLGISFLL 359
Query: 357 QKEDG 361
KEDG
Sbjct: 360 HKEDG 364
>gi|222148152|ref|YP_002549109.1| hypothetical protein Avi_1542 [Agrobacterium vitis S4]
gi|221735140|gb|ACM36103.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 362
Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats.
Identities = 136/362 (37%), Positives = 210/362 (58%), Gaps = 2/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RYF K Y T +F++G ++F+ID +E+ + + S+ +L R+P
Sbjct: 2 MLNTLSRYFLKRYAITVFWFVIGVAAIIFLIDFSEVSGRFSDNEQSSLFGVFLLTLMRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L++QQ +PFI L +V LNR SELVI+RA GIS+WQ + PF++G+ +LG T L+I
Sbjct: 62 LLLQQTVPFIALFSGMVTLITLNRRSELVIARAAGISVWQFMFPFLLGAFMLGCATSLLI 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKS-DIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G+K L ++ D G + + +PWM+ ++D IGA +L + +
Sbjct: 122 NPLAALGQKQAATLEAEYSDPGKASNNKNSVPWMRQITGKEDTIIGATSVLEDGTLLMQA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D + +I R+DA A + + LK VVE + G P + S ++ +K + Q+
Sbjct: 182 VFIHFDGQGRITSRQDARTAKLQDGYWLLKDVVETKPGETPKRETSAQVSTNLKQEFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + +FYE+ +K++ + KS ETQF+ L+ P + VAMTLIAA+VSL+FS
Sbjct: 242 RLAQPDTVAFYELSQKIAVA-KSYGVSTKNLETQFHTLLSTPFLFVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R NQ R ++ GI SGF+LY ++K+FG SG++ P A +PVI+ +L ILL +E
Sbjct: 301 RFNQSRSVILGGIISGFVLYVATVLVKAFGSSGVVPPFVATWVPVIVATALGATILLHQE 360
Query: 360 DG 361
DG
Sbjct: 361 DG 362
>gi|240850231|ref|YP_002971624.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
gi|240267354|gb|ACS50942.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
Length = 363
Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats.
Identities = 120/364 (32%), Positives = 190/364 (52%), Gaps = 4/364 (1%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RYFF YLK T YF +L +ID E ++ +P+++ L+ R+
Sbjct: 1 MIGWTLGRYFFIRYLKITCYFWGSIFVLALLIDFTENSGRLSSIPHHTAKDAFFLSVLRI 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I+QQ+IPFI L + +LN+ ELV++R+IG+S WQ L P +G+ LLG+F++L+
Sbjct: 61 PFIMQQLIPFIALFSAMATLISLNKKLELVVTRSIGVSAWQFLMPACLGAFLLGLFSILL 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
INP+A G + +W++N + I W+ IGAK I +
Sbjct: 121 INPLAAWGFSQAEKKMTEWRNNNVLTPLHNTDIHWLTQRTNLGRTTIGAKFITDQGLSLL 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
D T + + + + + A + N L Y+ G P + +K +
Sbjct: 181 DATFVQYNDNATVKNWINTPKATLTNGSWLLTNGTIYKIGHPPEKFTVLQIKTNLKPEFL 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ A+ FY++ KK+ + +S + + F LI +P +LVAMTLIAA+VSL
Sbjct: 241 TERLANPATIPFYQLPKKIMIA-RSFGYSANNFDMYFQSLIALPALLVAMTLIAATVSLN 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F+R Q R ++ G+ +GFMLY I ++++FG +G + P+ AA PV++ + L I LL
Sbjct: 300 FTRFGQSRTLILGGVIAGFMLYVISVLVQAFGNAGYIPPIIAAWTPVVIALFLGISFLLH 359
Query: 358 KEDG 361
KEDG
Sbjct: 360 KEDG 363
>gi|39936125|ref|NP_948401.1| permease YjgP/YjgQ [Rhodopseudomonas palustris CGA009]
gi|39649979|emb|CAE28503.1| predicted permease [Rhodopseudomonas palustris CGA009]
Length = 361
Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats.
Identities = 92/360 (25%), Positives = 170/360 (47%), Gaps = 3/360 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RYF + ++ +L G +L+ +D ++ + G L S A + RVP +
Sbjct: 4 NTLGRYFARRFVIASLGVFFGLFVLLVFVDYVDLLRRAGGLA-VSAFYVAQASFCRVPQL 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++++PF L+ + + L+R+ ELV++RA G+S W+ ++P + +I +GIF V NP
Sbjct: 63 LERLLPFCILIGGMTCYLALSRSLELVVARAAGLSAWEFISPALWSAIAIGIFATTVFNP 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ ++ + + D WM +P I A + + + T
Sbjct: 123 LSAHMQERAKQMEAEMFGENTGGLQDANGFWMNQVSPDGQAIINAARSQQQGAVLTGITV 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + R +A A++ LK V Y P+D+++ L + + +
Sbjct: 183 FRFEPDFQFKDRIEAREAVLEPGHWLLKNVRRYTMDGAPVDQDTLELPTSLTLAQVRNSF 242
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S SF+++ + S S F Q++ L+ P +L AM ++AASVSL F R
Sbjct: 243 ATPESVSFWQLPTYIKSSENSG-FATAGYRLQYHKLLAKPFLLAAMVMLAASVSLRFFRF 301
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL +EDG
Sbjct: 302 GGVQKMVLSGVAAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFLALLYQEDG 361
>gi|192291843|ref|YP_001992448.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
TIE-1]
gi|192285592|gb|ACF01973.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
TIE-1]
Length = 362
Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats.
Identities = 92/360 (25%), Positives = 170/360 (47%), Gaps = 3/360 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RYF + ++ +L G +L+ +D ++ + G L S A + RVP +
Sbjct: 5 NTLGRYFARRFVIASLGVFFGLFVLLVFVDYVDLLRRAGGLA-VSAFYVAQASFCRVPQL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++++PF L+ + + L+R+ ELV++RA G+S W+ ++P + +I +GIF V NP
Sbjct: 64 LERLLPFCILIGGMTCYLALSRSLELVVARAAGLSAWEFISPALWSAIAIGIFATTVFNP 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ ++ + + D WM +P I A + + + T
Sbjct: 124 LSAHMQERAKQMEAEMFGENTGGLQDANGFWMNQVSPDGQAIINAARSQQQGAVLTGITV 183
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + R +A A++ LK V Y P+D+++ L + + +
Sbjct: 184 FRFEPDFQFKDRIEAREAVLEPGHWLLKNVRRYTMDGAPVDQDTLELPTSLTLAQVRNSF 243
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S SF+++ + S S F Q++ L+ P +L AM ++AASVSL F R
Sbjct: 244 ATPESVSFWQLPTYIKSSENSG-FATAGYRLQYHKLLAKPFLLAAMVMLAASVSLRFFRF 302
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL +EDG
Sbjct: 303 GGVQKMVLSGVAAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFLALLYQEDG 362
>gi|163868027|ref|YP_001609231.1| hypothetical protein Btr_0826 [Bartonella tribocorum CIP 105476]
gi|161017678|emb|CAK01236.1| hypothetical transmembrane protein [Bartonella tribocorum CIP
105476]
Length = 363
Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats.
Identities = 120/364 (32%), Positives = 191/364 (52%), Gaps = 4/364 (1%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RYFF YLK T YF +L +ID E ++ LP+Y+ +L+ R+
Sbjct: 1 MIGWTLGRYFFIRYLKITCYFWGSIFVLALLIDFTENSGRLPSLPHYTAKDAFLLSVLRI 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I+QQ+IPFI L + +LN+ ELV++R+IG+S WQ L P +G+ LLG+F++L+
Sbjct: 61 PFIMQQLIPFIALFSAMTTLISLNKKLELVVTRSIGVSAWQFLMPACLGAFLLGLFSILL 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQK--SDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
INP+A G ++ +W++N + I W+ IGAK I +
Sbjct: 121 INPLAAWGFSQAEKMMTEWRNNNVLTSLHNTRIHWLTQRTDLGRTTIGAKFITDQGFSLL 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
D T + + + + A + + L Y+ G P + +K +
Sbjct: 181 DATFVQYKDDATVKNWINTPKATLTHGAWFLTNGTIYKIGHPPEKFTVLKIKTNLKPEFL 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ A+ FY++ KK+ + +S + + + LI +P +LVAMTLIAA+VSL
Sbjct: 241 TERLVNPATIPFYQLPKKIMIA-RSFGYSAHNFDMYLQSLIALPALLVAMTLIAATVSLN 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F+R Q R ++ G+ +GFMLY I ++++FG +G + P+ AA PV++ + L I LL
Sbjct: 300 FTRFGQSRTLILGGVIAGFMLYVISVLVQAFGNAGYIPPIIAAWTPVVIALFLGISFLLH 359
Query: 358 KEDG 361
KEDG
Sbjct: 360 KEDG 363
>gi|316933707|ref|YP_004108689.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
gi|315601421|gb|ADU43956.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
Length = 361
Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats.
Identities = 92/360 (25%), Positives = 168/360 (46%), Gaps = 3/360 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RYF + ++ +L G +L+ +D ++ + G L S A + RVP +
Sbjct: 4 NTLGRYFARRFVVASLGVFFGLFVLLVFVDYVDLLRRAGGLA-VSAFYVAQASFCRVPQL 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++++PF L+ + + L+R+ ELV++RA G+S W+ ++P + +I +GI + NP
Sbjct: 63 LERLLPFCILIGGMTCYLALSRSLELVVARAAGLSAWEFISPALWSAIAIGIVATTIFNP 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ ++ + + D WM NP I A + + + T
Sbjct: 123 LSAHMQERAKQMEAEMFGENTGGLQDANGFWMNQVNPDGQAIINAARSQQQGAVLTGITI 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D + R +A A++ LK V Y P D+++ L + + +
Sbjct: 183 FRFDPNFQFRDRIEAREAVLEPGHWLLKSVRRYTLDSAPTDQDTMELPTSLTLAQVRNSF 242
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S SF+++ + S S F Q++ L+ P +L AM ++AASVSL F R
Sbjct: 243 ATPESVSFWQLPAYIKSSENSG-FATAGYRLQYHKLLAKPFLLAAMVMLAASVSLRFFRF 301
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL +EDG
Sbjct: 302 GGVQKMVLSGVAAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFLALLYQEDG 361
>gi|209885475|ref|YP_002289332.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
gi|209873671|gb|ACI93467.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
Length = 364
Score = 344 bits (884), Expect = 9e-93, Method: Composition-based stats.
Identities = 91/358 (25%), Positives = 171/358 (47%), Gaps = 2/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF + ++ + LG +L+ ++D E+ + +P S A + RVP ++
Sbjct: 9 TLARYFARRFIVASCAVFLGIFLLLVLVDYIEMVRRTSSIPTASAFMVAQTSLFRVPQLL 68
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++++PF L+ + + L+R+ ELV++RA GIS WQ + P +V ++++GI + NPI
Sbjct: 69 ERLMPFCILIGAMSCYLALSRSLELVVARAAGISAWQFITPALVSALVMGILATVAYNPI 128
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++ ++ Q NG Q W+ + I A + T
Sbjct: 129 SAAMQERSKEMEAQLFSNGGVQDVAQS-WINQVTSEGQSIISAALSQNQGTRLSGVTVFR 187
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ R DA A + + +L Y PI +S L+ + +
Sbjct: 188 FNPDGSFRDRIDARDANLEPGQWRLGGARIYSMTAAPIPHDSFLLSTNLTPSQVRNSFAT 247
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ SF+++ + + S++S+ Q+ L+ P +L +M L+AA+VSL F R
Sbjct: 248 PETVSFWQLPEYIR-SSQSSGLATAGYRLQYQKLLARPFLLASMVLVAAAVSLRFFRFGG 306
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + + L LL +EDG
Sbjct: 307 VQKMVLSGVAAGFLLYVLSKVTEDLSKAELMHPLAAAWLPVCVGGLIGFLALLHQEDG 364
>gi|75675870|ref|YP_318291.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
gi|74420740|gb|ABA04939.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
Length = 365
Score = 344 bits (884), Expect = 9e-93, Method: Composition-based stats.
Identities = 90/363 (24%), Positives = 166/363 (45%), Gaps = 3/363 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ L RYF ++ L +L+ ++D E+ + L + S A + RVP
Sbjct: 4 LTNTLGRYFAGRFMVAALGVFASIFLLLVLVDYIEMVRRTSGLASASALMVAETSLFRVP 63
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+++++ PF L+ + + L+R ELV++RA G+S WQ ++P + +I LG+F V
Sbjct: 64 QLLEKLTPFCVLIGAMTCYLALSRKLELVVARAAGVSAWQFISPTLACAIALGVFATTVY 123
Query: 121 NPIATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
NP++++ ++ + + G W+ I A +
Sbjct: 124 NPLSSNLRELSKRMEAEMFGGASGGGLHDASGFWINQVTDDGQAIINAALSEQQGVRLTG 183
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T D ++ R +A A + + + K V + P+++ + L + Q
Sbjct: 184 LTVFRFDPDSRFRERIEAREAALEDGRWLFKGVRRFTLDNPPVEQETFVLPTSLTPAQVQ 243
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ SF+++ + S S+ F Q++ LI P +L AM ++AASVSL F
Sbjct: 244 NSFSTPETVSFWQLPDYIRSSE-SSGFATAGYRLQYHKLIAQPFLLAAMVMLAASVSLRF 302
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + +V G+ SGF+LY + + + K+ ++ P+AAA +PV + L+LL +
Sbjct: 303 FRFGGVQKMVLSGVGSGFLLYVLSKVTEDLSKAELMNPIAAAWLPVCVGGLTGFLVLLHQ 362
Query: 359 EDG 361
EDG
Sbjct: 363 EDG 365
>gi|319898730|ref|YP_004158823.1| hypothetical protein BARCL_0559 [Bartonella clarridgeiae 73]
gi|319402694|emb|CBI76240.1| conserved membrane protein of unknown function [Bartonella
clarridgeiae 73]
Length = 363
Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats.
Identities = 120/364 (32%), Positives = 194/364 (53%), Gaps = 4/364 (1%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RYFF YLK YFLLG IL +ID E +++ LP+Y++ +++ R+
Sbjct: 1 MIGWTLGRYFFVLYLKKICYFLLGVFILTLLIDFTENSSRLELLPHYTVKGAFLISLLRI 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I+QQ+ PFI L + + +LN+ ELV++R+IGIS WQ L P G+ LLG+F++L
Sbjct: 61 PFIMQQLFPFIALFSAMTMLISLNQKLELVVARSIGISAWQFLMPACFGAFLLGLFSILF 120
Query: 120 INPIATSGEKIGIDLIQQWKDNG--DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+NP+A +I W+ N + IPW+ IGAK I +
Sbjct: 121 VNPLAAWSSSQAEKMIAAWRSNNIEISTSNTRIPWLTQQTNLGRTTIGAKSITHQGLSLI 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
D + ++ + + + A + N L Y+ G+ P L +K +
Sbjct: 181 DAIFVQYNENATVKNWINTKKATLTNGAWLLTNGTIYKIGQTPEKFTELRLKTHLKPEFL 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + FY++ +K++ + +S + + + LI P++LVAMTLIAA+VSL+
Sbjct: 241 TEHLADPVTIPFYKLPEKIAVA-RSFGYSANKFDMHLQSLIASPILLVAMTLIAATVSLK 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F+R Q R ++ G+ +GF+LY I +++SFG +G + P+ AA +PV++ +S I LL
Sbjct: 300 FTRFGQSRTLILGGVIAGFILYVISVLVRSFGNAGYIPPIIAAWVPVVVALSFGISFLLH 359
Query: 358 KEDG 361
EDG
Sbjct: 360 TEDG 363
>gi|90423815|ref|YP_532185.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
gi|90105829|gb|ABD87866.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
Length = 362
Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats.
Identities = 87/360 (24%), Positives = 166/360 (46%), Gaps = 2/360 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RYF ++ L G +L+ +D ++ + G P+ S + RVP +
Sbjct: 4 NTLSRYFAGRFVTAALAVFAGLFVLLVFVDYIDLLRRAGGRPSISALLIVQTSVYRVPQL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++++PF L+ + + L+R ELV++RA GIS WQ + P + ++ LG+F +V NP
Sbjct: 64 LERLMPFCILIGAMTCYLALSRRLELVVARAAGISAWQFMAPALWSALALGVFATVVFNP 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ + ++ + + + D W+ + I A + + + +
Sbjct: 124 MSANMQERAKQMEAEMFGDSSGSLQDASGFWINQVTTEGQAIINAARSQQQGALLTGLSV 183
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ R +A A + + K + Y P+D++ L + + +
Sbjct: 184 FRFEPDFSFSERIEAREATLEPGFWRFKNLRRYTLDGPPVDQDVFLLPTTLTLAQVRNSF 243
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ SF+++ + S S+ F QF+ L+ P +L AM ++AASVSL F R
Sbjct: 244 STPETVSFWQLPGYIRSSE-SSGFATAGYRLQFHKLLARPFLLAAMVMLAASVSLRFFRF 302
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL +EDG
Sbjct: 303 GGVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGSLAGFLALLHQEDG 362
>gi|225627183|ref|ZP_03785221.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|225618018|gb|EEH15062.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
Length = 397
Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats.
Identities = 118/363 (32%), Positives = 199/363 (54%), Gaps = 3/363 (0%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RYFF Y++ TLYFLLG L ++D E +++ LP Y++ L+A RV
Sbjct: 36 MIGWTLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRV 95
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I+QQ+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ +
Sbjct: 96 PFIMQQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFI 155
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWED 178
+NP+A G ++ WK S + PW++ + + IGAK IL + D
Sbjct: 156 LNPLAAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLAD 215
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T I D++ I R DA A + + +L V+ + G+ P + ++ ++ + +
Sbjct: 216 ATFIQFDEQKNIKDRYDARTATLQDGYWELTDVMRFARGQEPQKLETFRISTQLRPEYVE 275
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + F ++ K+ + +S + + Q+ L+ +P +L+AMTLIAA+VSL+F
Sbjct: 276 EKLASPETIPFTQLRHKIEVA-RSFGYSANAFDMQYQSLLALPALLMAMTLIAATVSLKF 334
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R Q ++ G+ +GF+LY + ++K+FG +G + P AA +PV++ + LL K
Sbjct: 335 VRFGQSGAMILGGVIAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLLHK 394
Query: 359 EDG 361
EDG
Sbjct: 395 EDG 397
>gi|227821475|ref|YP_002825445.1| permease YjgP/YjgQ family protein [Sinorhizobium fredii NGR234]
gi|227340474|gb|ACP24692.1| permease YjgP/YjgQ family protein [Sinorhizobium fredii NGR234]
Length = 360
Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats.
Identities = 138/361 (38%), Positives = 211/361 (58%), Gaps = 2/361 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ L RYFFK Y+ TT +FL+G L+F+ID +E+ ++M LP+Y++S ++ R+P
Sbjct: 2 ILSTLGRYFFKRYIVTTFWFLVGIFALIFIIDFSELASRMSALPHYTVSGALLMTTFRIP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+QQ +PF+ L + +LNR ELV++RA GIS+WQ L PFV+G+ L+G+ V+ +
Sbjct: 62 TILQQTVPFVALFSAMAALISLNRRYELVVTRAAGISVWQFLRPFVLGAFLVGVLAVVAL 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
NP+A G K L +W + +S IPW++ D IGA+ + + T
Sbjct: 122 NPLAAWGTKRAEALEAEW-GSSRSAQSSSIPWLRQIYDGTDTIIGARSVQNGGTELINVT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
I D + I R+DA A + + L V E GR+P + L +K D Q+
Sbjct: 181 VIHFDPQGTITLRQDAKSAKLEDGYWLLNGVTESGNGRLPRRLETVQLRTNLKADFVQER 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S F+++ K+ + +S F ETQ + L+ +PL+LVAMTLIAA VSL+FSR
Sbjct: 241 LAKADSIQFFDLPHKIEVA-RSFGFSTDAMETQLHSLLSLPLLLVAMTLIAACVSLKFSR 299
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
NQ R ++ GI SGF+LY + ++K+FG SGI+ P AA +PV++ ++L ILL +ED
Sbjct: 300 FNQSRSVILGGILSGFVLYVVTVLVKAFGSSGIVPPFVAAWLPVVVAMALGSTILLHQED 359
Query: 361 G 361
G
Sbjct: 360 G 360
>gi|92117864|ref|YP_577593.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
gi|91800758|gb|ABE63133.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
Length = 365
Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats.
Identities = 87/363 (23%), Positives = 166/363 (45%), Gaps = 3/363 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ L RYF ++ L +L+ ++D E+ + L + S A + RVP
Sbjct: 4 LTNTLGRYFASRFVVAALGVFASIFLLLVLVDYIEMVRRTSGLASASAIMVAETSLFRVP 63
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+++++ PF L+ + + L+R ELV++RA GIS WQ ++P + +++LG+
Sbjct: 64 QLLEKLTPFCVLIGAMTCYLALSRRLELVVARAAGISAWQFISPALACALVLGVLATTAY 123
Query: 121 NPIATSGEKIGIDLIQQWKD--NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
NP++ + ++ + + +G + W+ I A + +
Sbjct: 124 NPMSANLRELSKKMEAELFGSVSGGGLQEASGFWINQVTDDGQAIINAARSEQQGVRLTG 183
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T D + R +A A + + + K V + P+++ + L + +
Sbjct: 184 LTVFRFDPDSTFRERIEAREATLEDGRWLFKGVRRFTLDSPPVEQETFVLPTSLTAAQVR 243
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ SF+++ + S S+ F Q++ LI P +L AM ++AASVSL F
Sbjct: 244 NSFSTPETVSFWQLPGYIRSSE-SSGFATAGYRLQYHKLIAQPFLLAAMVMLAASVSLRF 302
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + +V G+ SGF+LY + + + K+ ++ P+AAA +PV + L+LL +
Sbjct: 303 FRFGGVQKMVLSGVGSGFLLYVLSKVTEDLSKAELMNPIAAAWLPVCVGGLAGFLVLLHQ 362
Query: 359 EDG 361
EDG
Sbjct: 363 EDG 365
>gi|85716330|ref|ZP_01047303.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
gi|85696846|gb|EAQ34731.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
Length = 365
Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats.
Identities = 89/363 (24%), Positives = 168/363 (46%), Gaps = 3/363 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ L RYF +L L + +L+ ++D E+ + L + S A + RVP
Sbjct: 4 LTNTLGRYFAGRFLVAALGVFVSIFLLLVLVDYIEMVRRTSGLASASALVVAETSLFRVP 63
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+++++ PF L+ + + L+R ELV++RA G+S WQ ++P + +I+LG V
Sbjct: 64 QLLEKLTPFCVLIGAMTCYLALSRQLELVVARAAGVSAWQFISPALACAIVLGALATTVY 123
Query: 121 NPIATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
NP++ + ++ + + G + W+ I A + +
Sbjct: 124 NPLSANLRELSKRMEAELFGGVSGGGLQDASGFWINQVTDDGQAIINAARSEQQGVRLTG 183
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T + ++ R +A A + + + K V + P+++ + L+ + Q
Sbjct: 184 LTVFRFNPHSRFEERIEAREAALEDGRWLFKGVRRFTLDNPPVEQETFVLSTSLTPAQVQ 243
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ SF+++ + S S+ F Q++ LI P +L AM ++AASVSL F
Sbjct: 244 NSFSTPETVSFWQLPGYIKSSE-SSGFATAGYRLQYHKLIAQPFLLAAMVMLAASVSLRF 302
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + +V G+ SGF+LY + + + K+ ++ P+AAA +PV + L+LL +
Sbjct: 303 FRFGGVQKMVLSGVGSGFLLYVLSKVTEDLSKAELMNPIAAAWLPVCVGGLTGFLVLLYQ 362
Query: 359 EDG 361
EDG
Sbjct: 363 EDG 365
>gi|121601841|ref|YP_988822.1| YjgP/YjgQ permease [Bartonella bacilliformis KC583]
gi|120614018|gb|ABM44619.1| putative permease, YjgP/YjgQ family [Bartonella bacilliformis
KC583]
Length = 363
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 127/360 (35%), Positives = 195/360 (54%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYFF YL+ T YFLLGA IL F+ID E +++ LP+Y+ +++ R+PLI+
Sbjct: 5 ILGRYFFIQYLRITCYFLLGAFILAFLIDFIENSSRLTSLPHYTTKGALLISFLRIPLIM 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ+ PFI L I + +LNR ELVI+R+IG+S WQ L P G+ LG+ + + NP
Sbjct: 65 QQLFPFIALFSAITMLISLNRKFELVIARSIGVSAWQFLMPACFGAFFLGLVAIFLFNPF 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQK--SDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A G +I +W N + + IPW IGAK I E +
Sbjct: 125 AAWGYSQAEKIIAEWHSNNVQTSLNNHRIPWFTQHTDLGTTTIGAKSITDEGLSLINAIF 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I + A A + N L Y+ G IP + +K + ++
Sbjct: 185 VQYNEDATIKNWIHAQKATLTNSAWFLTHGTIYKTGHIPEKFAEFWIETNLKPEFLTEYL 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
A+ SFY++ KK++ + +S + + + LI +P +LVAMTLIAA+VSL+F+R
Sbjct: 245 ADPATTSFYKLPKKIAVA-RSFGYSANKFDMYLQSLIALPALLVAMTLIAATVSLKFTRL 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q ++ G+ +GF+LY I ++++FG +G + P+ AA +PVI+ + L I LL KEDG
Sbjct: 304 EQSGKLILSGVIAGFVLYVISVLVRAFGNAGYIPPIIAAWVPVIIALFLGISFLLHKEDG 363
>gi|158425948|ref|YP_001527240.1| permease precursor [Azorhizobium caulinodans ORS 571]
gi|158332837|dbj|BAF90322.1| permease precursor [Azorhizobium caulinodans ORS 571]
Length = 363
Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats.
Identities = 91/364 (25%), Positives = 163/364 (44%), Gaps = 4/364 (1%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L YF + + + + L+ ++D E+ + + S A+L R
Sbjct: 1 MIGRTLGFYFARRFFASVTMIFFSCVGLIMLVDFLEMARRTADRDTVSAVTVALLTIYRT 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P +Q++PF L + F L+R ELV++RA+G+S+WQ +P ++ + L+G+F V
Sbjct: 61 PAFTEQLLPFAVLFGGMATFVTLSRKLELVVARAVGLSVWQFTSPALLVAFLIGVFATCV 120
Query: 120 INPIATSGEKIGIDLIQQWKD--NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
NP++ ++ + + + +G + W++ + I A
Sbjct: 121 FNPVSADFKERANRMEAEIFNTASGVFTQGTSGFWIRQQSVDGQAIIQAAASQQGGRQLT 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
T D+ K+ R +A AI+ + +K+ G + L +
Sbjct: 181 GVTVFEFDRNGKLTDRVEAKSAILGDGYWTMKEARVLVPGSDQQTFETYLLATKLDPKQI 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q+ + SF+++ +S + +S F R Q L+ P +LVAM LIAA V L
Sbjct: 241 QESLVSPETVSFWQLPDAISNAEQSG-FGAARYRLQLQSLLARPFLLVAMVLIAAVVGLR 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + G+ +GF+LY + + G +G++ P+AAA P + I + +LILL
Sbjct: 300 VFRFGGVGQTILGGVLAGFLLYLGTKLAEDLGDAGVVHPIAAAWFPALAGIFMGVLILLH 359
Query: 358 KEDG 361
+EDG
Sbjct: 360 REDG 363
>gi|299133713|ref|ZP_07026907.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
gi|298591549|gb|EFI51750.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
Length = 360
Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats.
Identities = 89/358 (24%), Positives = 171/358 (47%), Gaps = 2/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF + ++ +L LG +L+ ++D E+ + +P S A + RVP ++
Sbjct: 5 TLARYFARRFIIASLAVFLGIFLLLVLVDYIEMVRRTSSIPTASAIMVAETSLFRVPQLL 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++++PF L+ + + L+R+ ELV++RA GIS WQ + P +V ++L+G+ +V NPI
Sbjct: 65 EKLMPFCILIGAMSCYLALSRSLELVVARAAGISAWQFITPALVAALLMGVLATVVYNPI 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++ ++ + NG Q + W+ + I A + T
Sbjct: 125 SAAMQERSKEMEAKLFSNGGVQNVEQS-WINQVTSEGQSIISAALSQNQGTRLSGVTVFR 183
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ R DA+ A + + +L + P+ +++ L + +
Sbjct: 184 FNPDGSFRDRIDANEANLEPGEWRLGGARIHSMTAAPVIQDNLLLKTNLTPAQVRNSFAT 243
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ SF+++ + S S + Q+ L+ P +L +M L+AA+VSL F R
Sbjct: 244 PETVSFWQLPGYIQSSASSGL-ATAGYRLQYQKLLARPFLLASMVLVAAAVSLRFFRFGG 302
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL +EDG
Sbjct: 303 VQKMVLSGVAAGFLLYVLSKVTEDLSKAELMYPLAAAWLPVCVGGLTGFLALLHQEDG 360
>gi|62289648|ref|YP_221441.1| hypothetical protein BruAb1_0705 [Brucella abortus bv. 1 str.
9-941]
gi|82699576|ref|YP_414150.1| YjgP/YjgQ permease [Brucella melitensis biovar Abortus 2308]
gi|189023898|ref|YP_001934666.1| permease [Brucella abortus S19]
gi|254688958|ref|ZP_05152212.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 6
str. 870]
gi|254697092|ref|ZP_05158920.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 2
str. 86/8/59]
gi|254729988|ref|ZP_05188566.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 4
str. 292]
gi|256257206|ref|ZP_05462742.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 9
str. C68]
gi|260545600|ref|ZP_05821341.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
gi|260754447|ref|ZP_05866795.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
gi|260757666|ref|ZP_05870014.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
gi|260761493|ref|ZP_05873836.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260883476|ref|ZP_05895090.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
gi|297248056|ref|ZP_06931774.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
gi|62195780|gb|AAX74080.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
gi|82615677|emb|CAJ10664.1| Predicted permease YjgP/YjgQ family [Brucella melitensis biovar
Abortus 2308]
gi|189019470|gb|ACD72192.1| Predicted permease YjgP/YjgQ family [Brucella abortus S19]
gi|260097007|gb|EEW80882.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
gi|260667984|gb|EEX54924.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
gi|260671925|gb|EEX58746.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260674555|gb|EEX61376.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
gi|260873004|gb|EEX80073.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
gi|297175225|gb|EFH34572.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
Length = 362
Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats.
Identities = 119/363 (32%), Positives = 199/363 (54%), Gaps = 3/363 (0%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RYFF Y++ TLYFLLG L ++D E N++ LP Y++ L+A RV
Sbjct: 1 MIGWTLGRYFFTRYVQITLYFLLGIFALALLLDFTENANRLANLPAYTVWAALGLSAMRV 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I+QQ+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ +
Sbjct: 61 PFIMQQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFI 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWED 178
+NP+A G ++ WK S + PW++ + + IGAK IL + D
Sbjct: 121 LNPLAAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLAD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T I D++ I R DA A + + +L V+ + G+ P + ++ ++ + +
Sbjct: 181 ATFIQFDEQKNIKDRYDARTATLQDGYWELTDVMRFARGQEPQKLETFRISTQLRPEYVE 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + F ++ K+ + +S + + Q+ L+ +P +L+AMTLIAA+VSL+F
Sbjct: 241 EKLASPETIPFTQLCHKIEVA-RSFGYSANAFDMQYQSLLALPALLMAMTLIAATVSLKF 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R Q ++ G+ +GF+LY + ++K+FG +G + P AA +PV++ + LL K
Sbjct: 300 VRFGQSGAMILGGVIAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLLHK 359
Query: 359 EDG 361
EDG
Sbjct: 360 EDG 362
>gi|90419501|ref|ZP_01227411.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90336438|gb|EAS50179.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 360
Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats.
Identities = 110/358 (30%), Positives = 182/358 (50%), Gaps = 2/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF+ Y+ + L LL L+++IDL E+ + + A+ + RVP I
Sbjct: 5 TLNRYFFRLYVVSFLSTLLTVFALIYLIDLIEVSRR-SRFEDLGFGATALFSLLRVPSFI 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q PFI L +I LNR ELV++RA G+SIWQ+L PFVVGS L+GI V NP+
Sbjct: 64 GQAFPFIVLFSSIYTLLTLNRRLELVVARASGVSIWQILLPFVVGSFLIGIVATFVYNPL 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + D+ GD SD +PW++ +GAK + + D T+
Sbjct: 124 TAYTKTLSEDMQTTMTAGGDVSSSDRVPWLRQEGDGIQSILGAKTVARSGTVLGDITAFV 183
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
++ + + R DA A++ ++ L+K + G P L ++ + ++
Sbjct: 184 MNDEGIVKERIDAARAVLNDEYWLLEKPRVTRVGYRPEFPQEYKLPTSLRPEYVEQRIAD 243
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S +++ K+ + S F+ Q++ L+ P + +AMTL+AA+V+ FSR+ Q
Sbjct: 244 PEAISIWQLGSKIDVAA-SLGFNTDAFRMQYHTLVAQPALFIAMTLLAATVATRFSRTGQ 302
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+A G+ +GF+LY + + K+ G + ++ PV AA PV+ + ILL +EDG
Sbjct: 303 SGRTIAGGVMAGFVLYVVTFLAKALGSNDVVPPVMAAWFPVLAAGLSGVTILLHQEDG 360
>gi|49475338|ref|YP_033379.1| hypothetical protein BH05440 [Bartonella henselae str. Houston-1]
gi|49238144|emb|CAF27352.1| Hypothetical transmembrane protein [Bartonella henselae str.
Houston-1]
Length = 365
Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats.
Identities = 119/366 (32%), Positives = 190/366 (51%), Gaps = 6/366 (1%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L +YFF YLK T YFL G +L +ID E ++ LP Y+ +++ R+
Sbjct: 1 MIGWTLGQYFFIRYLKMTCYFLGGIFVLALLIDFTENSGRLSSLPRYTAKDAFLISVLRI 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I+QQ+IPFI L + + +LNR SELV++R+IGIS WQ L P G+ L G+F++L+
Sbjct: 61 PFIMQQLIPFIALFSAMAMLISLNRKSELVVTRSIGISAWQFLMPACFGAFLFGLFSILL 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGD----KQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+NP+A G ++ +W+ + + I W+ IGAK I +
Sbjct: 121 VNPLAAWGFSQAERMMTEWRSKNNNVLTSLHNTRILWLTQRTHSGRTTIGAKSITDQGLS 180
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
D T + + I + ++ A + N L Y+ G P + + +K +
Sbjct: 181 LIDATFVQYNDNATIKNWINSRKATLINGAWLLTDGTIYKIGHPPEKFSELQIQTTLKPE 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ A+ FY++ K+ + +S + + LI +P +L+AMTLIAA VS
Sbjct: 241 FLTERLVNPATIPFYQLPTKIMIA-RSFGYSANNFDMYLQSLIALPALLIAMTLIAAVVS 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L F+R Q +I++ G+ +GF LY I ++++FG +G + P+ AA PV + + L I L
Sbjct: 300 LNFTRFGQSKILILGGVIAGFSLYVISILVQAFGNAGYIPPIIAAWTPVFIALFLGISFL 359
Query: 356 LQKEDG 361
L KEDG
Sbjct: 360 LHKEDG 365
>gi|86749599|ref|YP_486095.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
gi|86572627|gb|ABD07184.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
Length = 361
Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 92/361 (25%), Positives = 169/361 (46%), Gaps = 3/361 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RYF ++ + L G +L+ +D ++ + G L S A + RVP
Sbjct: 3 LNTLGRYFAARFVSSALGVFFGLFVLLVFVDYIDLLRRAGGLS-VSAFVIAQASFFRVPQ 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++++++PF L+ + + L+R ELVI+RA G+S WQ + P + ++ LG+F V N
Sbjct: 62 LLERLLPFCILIGGMTCYLALSRRLELVIARAAGLSAWQFIAPALWSALALGVFASAVFN 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
P++ ++ + + G D WM +P+ I A + + + +
Sbjct: 122 PMSAYMQERAKQMEAELFGQGSGSLQDANGFWMNQVSPEGQSIINAARSQQQGAVLSGIS 181
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + R +A A++ LK V +Y P ++ + L + + +
Sbjct: 182 VFRFEPDFQFKDRIEAREAVLEPGYWLLKDVRKYTLDSAPEEQATLRLPTALTLAQVRNS 241
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S SF+++ + S S+ F Q++ L+ P +L AM ++AASVSL F R
Sbjct: 242 FATPESVSFWQLPSYIKASE-SSGFATAGYRLQYHKLLAKPFLLAAMVMLAASVSLRFFR 300
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL +ED
Sbjct: 301 FGGVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFLALLYQED 360
Query: 361 G 361
G
Sbjct: 361 G 361
>gi|91977435|ref|YP_570094.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
gi|91683891|gb|ABE40193.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
Length = 361
Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 90/360 (25%), Positives = 171/360 (47%), Gaps = 3/360 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RYF ++ + L G +L+ +D ++ + G L S A + RVP +
Sbjct: 4 NTLGRYFAARFVTSALGVFFGLFVLLVFVDYIDLLRRAGGLA-VSALVIAQASFYRVPQL 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++++PF L+ + + L+R+ ELVI+RA G+S W+ ++P + ++ LG+F V NP
Sbjct: 63 LERLMPFCILIGGMTCYLALSRSLELVIARAAGLSAWEFVSPALWSALALGVFASAVFNP 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ ++ + + G D WM +P+ I A + + + +
Sbjct: 123 MSAYMQERAKQMEAELFGQGSGSLQDASGFWMNQVSPEGQSIINAARSQQQGAVLSGISV 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + R +A A++ L+ V Y P+ +++ L + + +
Sbjct: 183 FRFEPDFQFKDRIEAREAVLEPGHWLLRDVRRYTLDSAPVQEDTFRLPTALTLAQVRNSF 242
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S SF+++ + S S+ F Q++ L+ P +L AM ++AASVSL F R
Sbjct: 243 ATPESVSFWQLPSYIRASE-SSGFATSGYRLQYHKLLAKPFLLAAMVMLAASVSLRFFRF 301
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + L LL +EDG
Sbjct: 302 GGVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFLALLYQEDG 361
>gi|319404055|emb|CBI77643.1| conserved membrane hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 363
Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats.
Identities = 122/364 (33%), Positives = 200/364 (54%), Gaps = 4/364 (1%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RYFF YLKT +FLLG ILV +ID E +++ LP+Y+ +++ R+
Sbjct: 1 MIGLTLGRYFFMLYLKTVCFFLLGVFILVLLIDFTENSSKLALLPHYTAKGAFLISLLRI 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
PLI+QQ+ PFI L I + +LN+ ELV++R+IGIS WQ L P G+ L G+F++L
Sbjct: 61 PLIMQQLFPFIALFSAITMLISLNKKLELVVARSIGISAWQFLAPACFGAFLFGLFSILF 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKS--DIIPWMQISNPQQDIFIGAKKILPENHIWE 177
INP+A +I +W+ N + + IPW+ I +GAK I+ ++
Sbjct: 121 INPLAAWSSSQAKKMIAEWRSNSAQISTTDTRIPWLTQHTNLGRITVGAKSIIYQDLSLI 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
D T + ++ + + + A + + L Y+ G+ P + +K +
Sbjct: 181 DATFVQYNENATVKNWINTKKATLTDGAWLLTNGTIYKIGQTPEKFTELRIKTHLKPEFL 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + FY + KK++ + +S + + + LI +P++LVAMTLIAA+VSL+
Sbjct: 241 TEYLTDPITIPFYTLPKKIAVA-RSLGYSANKFDMHLQSLIALPMLLVAMTLIAATVSLK 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R Q R ++ G+ +GF+LY I +++SFG +G + P+ AA +PVI+ + +I LL
Sbjct: 300 IPRFGQSRTLILGGVIAGFILYVISMLVQSFGNAGYIPPIIAAWVPVIVALFFAISFLLY 359
Query: 358 KEDG 361
EDG
Sbjct: 360 TEDG 363
>gi|319784424|ref|YP_004143900.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317170312|gb|ADV13850.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 360
Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats.
Identities = 116/362 (32%), Positives = 193/362 (53%), Gaps = 3/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RYFF Y+ T++F +G + LVF+ID E+ + LP ++ ++ R+P
Sbjct: 1 MGWTLGRYFFFRYVTITIWFFIGLLALVFLIDFTELSGRTTGLPGFTYGTAVAISGLRMP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+I+ Q +PF+ L + +LNR ELVI+R+ G+S WQ L P +G++L G+ +V VI
Sbjct: 61 MIMLQTVPFVGLFSAMATLVSLNRRYELVIARSAGVSAWQFLLPCCIGALLFGVLSVGVI 120
Query: 121 NPIATSGEKIGIDLIQQWKDN-GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A + Q + + +D PW++ D IGA+ IL + D
Sbjct: 121 NPLAAHAFSWSEQIETQLRSGKSNTVSADAAPWIRQKTSSGDTIIGARAILNQGLEMADV 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+D + I+ RKDA A + + +L+ V +Q G I + + +K + Q+
Sbjct: 181 VFFILDPQGNIVERKDAARAFLRDGYWELQDVKTFQNGTI-QASATDRVPTNLKPEFVQE 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + FY++ K+ + +S QF L+ +P +LVAMTLIAA+VS+ F+
Sbjct: 240 RLARPETIPFYDLPGKIEVA-RSFGLKANAFAMQFDSLVALPFLLVAMTLIAATVSMRFA 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R Q ++ GI +GF+LY + ++K+FG +G + V AA +PV++ + + LL KE
Sbjct: 299 RMGQSATMILGGIIAGFLLYVVSVLVKAFGVAGFVPTVVAAWVPVMVAMFFGVTFLLYKE 358
Query: 360 DG 361
DG
Sbjct: 359 DG 360
>gi|17987546|ref|NP_540180.1| putative permeases [Brucella melitensis bv. 1 str. 16M]
gi|225852206|ref|YP_002732439.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
gi|254693440|ref|ZP_05155268.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
Tulya]
gi|256044379|ref|ZP_05447283.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|256113222|ref|ZP_05454090.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
Ether]
gi|256264286|ref|ZP_05466818.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
63/9]
gi|260563731|ref|ZP_05834217.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
16M]
gi|261213693|ref|ZP_05927974.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
Tulya]
gi|265990797|ref|ZP_06103354.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|265994633|ref|ZP_06107190.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
Ether]
gi|17983249|gb|AAL52444.1| putative permeases [Brucella melitensis bv. 1 str. 16M]
gi|225640571|gb|ACO00485.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
gi|260153747|gb|EEW88839.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
16M]
gi|260915300|gb|EEX82161.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
Tulya]
gi|262765746|gb|EEZ11535.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
Ether]
gi|263001581|gb|EEZ14156.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|263094546|gb|EEZ18355.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
63/9]
gi|326408705|gb|ADZ65770.1| permease YjgP/YjgQ family protein [Brucella melitensis M28]
gi|326538429|gb|ADZ86644.1| permease YjgP/YjgQ family protein [Brucella melitensis M5-90]
Length = 362
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 119/363 (32%), Positives = 199/363 (54%), Gaps = 3/363 (0%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RYFF Y++ TLYFLLG L ++D E N++ LP Y++ L+A RV
Sbjct: 1 MIGWTLGRYFFTRYVQITLYFLLGIFALALLLDFTENANRLANLPAYTVWAALGLSAMRV 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I+QQ+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ +
Sbjct: 61 PFIMQQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFI 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWED 178
+NP+A G ++ WK S + PW++ + + IGAK IL + D
Sbjct: 121 LNPLAAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLAD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T I D++ I R DA A + + +L V+ + G+ P + ++ ++ + +
Sbjct: 181 ATFIQFDEQKNIKDRYDARTATLQDGYWELTDVMRFARGQEPQKLETFRISTQLRPEYVE 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + F ++ K+ + +S + + Q+ L+ +P +L+AMTLIAA+VSL+F
Sbjct: 241 EKLASPETIPFTQLRHKIEVA-RSFGYSANAFDMQYQSLLALPALLMAMTLIAATVSLKF 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R Q ++ G+ +GF+LY + ++K+FG +G + P AA +PV++ + LL K
Sbjct: 300 VRFGQSGAMILGGVIAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLLHK 359
Query: 359 EDG 361
EDG
Sbjct: 360 EDG 362
>gi|239831520|ref|ZP_04679849.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
3301]
gi|239823787|gb|EEQ95355.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
3301]
Length = 362
Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats.
Identities = 122/363 (33%), Positives = 194/363 (53%), Gaps = 3/363 (0%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RYFF Y++ T YFLLG L ++D E +++ LP+YS+ L+A RV
Sbjct: 1 MIGWTLGRYFFIRYVQITFYFLLGIFALSLLLDFTENASKLSNLPDYSVWAALGLSAMRV 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I+QQ+IPF+ L + +LNR ELV++R++G+S WQ L P G+ L G+ T+ +
Sbjct: 61 PFIMQQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGAFLFGLATIFI 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWED 178
+NP A G ++ WK S + PW++ + + IGAK IL + D
Sbjct: 121 LNPFAAYGFAKADEIASTWKTGKTTDVSALRDPWLRQKTDEGETIIGAKSILDQGATLAD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T I D+K I R DA A + + +L V + G P S + ++ + +
Sbjct: 181 ATFIQFDEKKNIRERFDARRAQLRDGHWELTDVTRFARGEEPQKMASFQIETQLRPEYVE 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + F ++ K+ + +S + + Q+ L+ +P +L+AMTLIAA+VSL+F
Sbjct: 241 EKLATPDTIPFTQLRHKIEVA-RSFGYSANAFDMQYQSLLALPALLMAMTLIAATVSLKF 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R Q ++ G+ +GFMLY + ++K+FG +G + P AA +PVI+ + LL K
Sbjct: 300 VRFGQSGAMILGGVIAGFMLYVVSVLVKAFGNAGFVPPFVAAWVPVIIATFFGVSFLLHK 359
Query: 359 EDG 361
EDG
Sbjct: 360 EDG 362
>gi|319407067|emb|CBI80704.1| conserved membrane hypothetical protein [Bartonella sp. 1-1C]
Length = 363
Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats.
Identities = 122/364 (33%), Positives = 199/364 (54%), Gaps = 4/364 (1%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RYFF YLKT +FLLG ILV +ID E +++ LP+Y+ +++ R+
Sbjct: 1 MIGLTLGRYFFMLYLKTVCFFLLGVFILVLLIDFTENSSKLAFLPHYTAKGAFLISLLRI 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
PLI+QQ+ PFI L I + +LN+ ELV++R+IGIS WQ L P G+ L G+F++L
Sbjct: 61 PLIMQQLFPFIALFSAITMLISLNKKLELVVARSIGISAWQFLAPACFGAFLFGLFSILF 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQK--SDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
INP+A +I +W+ N + IPW+ I +GAK I+ ++
Sbjct: 121 INPLAAWSSFQAEKMIAEWRSNNAQTSITGTRIPWLTQHTNLGRITVGAKSIIYQDLSLI 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
D T + ++ + + + A + + L Y+ G+ P + +K +
Sbjct: 181 DATFVQYNENATVKNWINTKKATLTDGAWLLTNGTIYKIGQTPEKFTELRIKTHLKPEFL 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + FY + KK++ + +S + + + LI +P++LVAMTLIAA+VSL+
Sbjct: 241 TEYLTDPITIPFYNLPKKIAVA-RSLGYSANKFDMHLQSLIALPMLLVAMTLIAATVSLK 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R Q R ++ G+ +GF+LY I +++SFG +G + P+ AA +PVI+ + +I LL
Sbjct: 300 IPRFGQSRTLILGGVIAGFILYVISMLVRSFGNAGYIPPIIAAWVPVIVALFFAISFLLY 359
Query: 358 KEDG 361
EDG
Sbjct: 360 TEDG 363
>gi|153009929|ref|YP_001371144.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
49188]
gi|151561817|gb|ABS15315.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
49188]
Length = 362
Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats.
Identities = 121/363 (33%), Positives = 194/363 (53%), Gaps = 3/363 (0%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RYFF Y++ T YFLLG L ++D E +++ LP+YS+ L+A RV
Sbjct: 1 MIGWTLGRYFFIRYVQITFYFLLGIFALSLLLDFTENASKLSNLPDYSVWAALGLSAMRV 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I+QQ+IPF+ L + +LNR ELV++R++G+S WQ L P G+ L G+ T+ +
Sbjct: 61 PFIMQQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGAFLFGLATIFI 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWED 178
+NP A G ++ WK S + PW++ + + IGAK IL + D
Sbjct: 121 LNPFAAYGFAKADEIASTWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILDQGATLAD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T I D+K I R DA A + + +L V + G P S + ++ + +
Sbjct: 181 ATFIQFDEKKNIKVRYDARTAQLKDGHWELTDVTRFARGEEPQKMASFQIETQLRPEYVE 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + F ++ K+ + +S + + Q+ L+ +P +L+AMTLIAA+VSL+F
Sbjct: 241 EKLATPDTIPFTQLRHKIEVA-RSFGYSANAFDMQYQSLLALPALLMAMTLIAATVSLKF 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R Q ++ G+ +GFMLY + ++K+FG +G + P AA +PV++ + LL K
Sbjct: 300 VRFGQSGAMILGGVIAGFMLYVVSVLVKAFGNAGFVPPFVAAWVPVVIATFFGVSFLLHK 359
Query: 359 EDG 361
EDG
Sbjct: 360 EDG 362
>gi|148560142|ref|YP_001258668.1| hypothetical protein BOV_0678 [Brucella ovis ATCC 25840]
gi|148371399|gb|ABQ61378.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
Length = 362
Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats.
Identities = 117/363 (32%), Positives = 199/363 (54%), Gaps = 3/363 (0%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RYFF Y++ TLYFLLG L ++D E +++ LP Y++ L+A RV
Sbjct: 1 MIGWTLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRV 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I+QQ+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ +
Sbjct: 61 PFIMQQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFI 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWED 178
+NP+A G ++ WK S + PW++ + + IGAK IL + D
Sbjct: 121 LNPLAAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLAD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T I D++ I R DA A + + +L V+ + G+ P + ++ ++ + +
Sbjct: 181 ATFIQFDEQKNIKDRYDARTATLQDGYWELTDVMRFARGQEPQKLETFRISTQLRPEYVE 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + F ++ K+ + +S + + Q+ L+ +P +L+A+TLIAA+VSL+F
Sbjct: 241 EKLASPETIPFTQLRHKIEVA-RSFGYSANAFDMQYQSLLALPALLMAITLIAATVSLKF 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R Q ++ G+ +GF+LY + ++K+FG +G + P AA +PV++ + LL K
Sbjct: 300 VRFGQSGAMILGGVIAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLLHK 359
Query: 359 EDG 361
EDG
Sbjct: 360 EDG 362
>gi|23501573|ref|NP_697700.1| hypothetical protein BR0686 [Brucella suis 1330]
gi|161618655|ref|YP_001592542.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
gi|163842956|ref|YP_001627360.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
gi|254701469|ref|ZP_05163297.1| hypothetical protein Bsuib55_11506 [Brucella suis bv. 5 str. 513]
gi|254704016|ref|ZP_05165844.1| hypothetical protein Bsuib36_08824 [Brucella suis bv. 3 str. 686]
gi|254707610|ref|ZP_05169438.1| hypothetical protein BpinM_11731 [Brucella pinnipedialis
M163/99/10]
gi|254709807|ref|ZP_05171618.1| hypothetical protein BpinB_05956 [Brucella pinnipedialis B2/94]
gi|256031298|ref|ZP_05444912.1| hypothetical protein BpinM2_11713 [Brucella pinnipedialis
M292/94/1]
gi|256060811|ref|ZP_05450971.1| hypothetical protein Bneo5_10662 [Brucella neotomae 5K33]
gi|256159412|ref|ZP_05457190.1| hypothetical protein BcetM4_10688 [Brucella ceti M490/95/1]
gi|256254706|ref|ZP_05460242.1| hypothetical protein BcetB_10505 [Brucella ceti B1/94]
gi|256369121|ref|YP_003106629.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
gi|260168437|ref|ZP_05755248.1| hypothetical protein BruF5_08723 [Brucella sp. F5/99]
gi|260566735|ref|ZP_05837205.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
gi|261221886|ref|ZP_05936167.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
gi|261315100|ref|ZP_05954297.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M163/99/10]
gi|261317345|ref|ZP_05956542.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
gi|261324803|ref|ZP_05964000.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
gi|261752012|ref|ZP_05995721.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
gi|261754671|ref|ZP_05998380.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
gi|261757899|ref|ZP_06001608.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
gi|265988383|ref|ZP_06100940.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M292/94/1]
gi|265997849|ref|ZP_06110406.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
gi|294852048|ref|ZP_06792721.1| hypothetical protein BAZG_00964 [Brucella sp. NVSL 07-0026]
gi|306845287|ref|ZP_07477863.1| hypothetical protein BIBO1_1972 [Brucella sp. BO1]
gi|23347486|gb|AAN29615.1| conserved hypothetical protein [Brucella suis 1330]
gi|161335466|gb|ABX61771.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
gi|163673679|gb|ABY37790.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
gi|255999281|gb|ACU47680.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
gi|260156253|gb|EEW91333.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
gi|260920470|gb|EEX87123.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
gi|261296568|gb|EEY00065.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
gi|261300783|gb|EEY04280.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
gi|261304126|gb|EEY07623.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M163/99/10]
gi|261737883|gb|EEY25879.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
gi|261741765|gb|EEY29691.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
gi|261744424|gb|EEY32350.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
gi|262552317|gb|EEZ08307.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
gi|264660580|gb|EEZ30841.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M292/94/1]
gi|294820637|gb|EFG37636.1| hypothetical protein BAZG_00964 [Brucella sp. NVSL 07-0026]
gi|306274446|gb|EFM56253.1| hypothetical protein BIBO1_1972 [Brucella sp. BO1]
Length = 362
Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats.
Identities = 118/363 (32%), Positives = 199/363 (54%), Gaps = 3/363 (0%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RYFF Y++ TLYFLLG L ++D E +++ LP Y++ L+A RV
Sbjct: 1 MIGWTLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRV 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I+QQ+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ +
Sbjct: 61 PFIMQQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFI 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWED 178
+NP+A G ++ WK S + PW++ + + IGAK IL + D
Sbjct: 121 LNPLAAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLAD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T I D++ I R DA A + + +L V+ + G+ P + ++ ++ + +
Sbjct: 181 ATFIQFDEQKNIKDRYDARTATLQDGYWELTDVMRFARGQEPQKLETFRISTQLRPEYVE 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + F ++ K+ + +S + + Q+ L+ +P +L+AMTLIAA+VSL+F
Sbjct: 241 EKLASPETIPFTQLRHKIEVA-RSFGYSANAFDMQYQSLLALPALLMAMTLIAATVSLKF 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R Q ++ G+ +GF+LY + ++K+FG +G + P AA +PV++ + LL K
Sbjct: 300 VRFGQSGAMILGGVIAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLLHK 359
Query: 359 EDG 361
EDG
Sbjct: 360 EDG 362
>gi|163746449|ref|ZP_02153807.1| permease YjgP/YjgQ family, putative [Oceanibulbus indolifex HEL-45]
gi|161380334|gb|EDQ04745.1| permease YjgP/YjgQ family, putative [Oceanibulbus indolifex HEL-45]
Length = 365
Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats.
Identities = 82/366 (22%), Positives = 162/366 (44%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + + + + LV ++D + + + + + + +P I
Sbjct: 2 ILHFYFARRFFTSFMVITAVLAALVMLVDGVDQARRFAD-DDVGWDQVLGMTLLNMPQTI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ + +F L R+SE+V++RA G S + L VV ++++G V V+NPI
Sbjct: 61 NMILPLIMILATVALFIGLARSSEMVVTRAAGRSALRALVAPVVVALIIGTLAVAVLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + L Q+++ NG SD W++ + I A + + + + T
Sbjct: 121 VAATSERSEQLTQKYRSNGSSALSVSDEGLWLRQGTEEGQSVIRAWRTNSDASVLYNVTI 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR------IPIDKNSTTLNIPIKMD 235
I+ D + I R +A+ A + +L + + + T+ + ++
Sbjct: 181 ISYDAEKGPIRRIEAESAQLSGGDWQLTGAKIWPLEAGVNAEGAAEEHETLTIPSSLTVE 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
++ + A+ S YE+ + + ++ F + E + P LVAM L+A++ +
Sbjct: 241 RIRESIARVAAVSIYELPEFIRQLEQAG-FSTRQHEVWLQAELARPFFLVAMVLVASAFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + V I GF LY I + + G++G + AA P + I L++ +L
Sbjct: 300 MRHTRFGGTGVAVLASILLGFGLYFIRSFAQILGENGQIPVTLAAWAPPVAAIFLALGLL 359
Query: 356 LQKEDG 361
L EDG
Sbjct: 360 LHAEDG 365
>gi|319405492|emb|CBI79111.1| conserved membrane hypothetical protein [Bartonella sp. AR 15-3]
Length = 363
Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats.
Identities = 125/364 (34%), Positives = 200/364 (54%), Gaps = 4/364 (1%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RYFF YLKTT FLLG ILV +ID E +++ LP Y+ +++ R
Sbjct: 1 MIGLTLGRYFFMLYLKTTCCFLLGVFILVLLIDFTENFSKLALLPYYTAKGAFLISLLRT 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
PLIIQQ+ PFI L I + +LN+ ELVI+R+IGIS WQ L P G+ L G+F++L
Sbjct: 61 PLIIQQLFPFIALFSAITMLISLNKRLELVIARSIGISAWQFLTPACFGAFLFGLFSILF 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
INP+A ++ W+ N ++ + IPW+ IGAK I+ ++
Sbjct: 121 INPLAAWSSSQSEKIVAAWRSNNNQISISNTRIPWLTQHTNLGRTTIGAKSIIHKDLSLI 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
D T + ++ + + + A++ + L Y+ G+ P + + +K +
Sbjct: 181 DATFVQYNENATVKNWINTKKAMLTDGAWLLINGTIYKIGQPPKKFSELRIKTHLKPEFL 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + + FYE+ KK++ + +S + + + LI +P++LVAMTLIAA+VSL+
Sbjct: 241 TEYLAEPVTIPFYELPKKIAVA-RSFGYSANKFDMHLQSLIALPMLLVAMTLIAATVSLK 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R Q + ++ GI +GF+LY I +++SFG +G + P+ AA +PVI+ + I LL
Sbjct: 300 IPRFGQSKTLILGGIIAGFILYVISMLVRSFGNAGYIPPIIAAWVPVIVALFFGISFLLY 359
Query: 358 KEDG 361
EDG
Sbjct: 360 TEDG 363
>gi|13476525|ref|NP_108095.1| hypothetical protein mll7865 [Mesorhizobium loti MAFF303099]
gi|14027286|dbj|BAB54240.1| mll7865 [Mesorhizobium loti MAFF303099]
Length = 360
Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats.
Identities = 114/362 (31%), Positives = 193/362 (53%), Gaps = 3/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RYFF Y+ T++F LG + LVF+ID E+ + LP ++ ++ R+P
Sbjct: 1 MGWTLGRYFFFRYVTITIWFFLGLLALVFLIDFTELSGRTTGLPGFTYGTAVAISGLRMP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+I+ Q +PF+ L + +LNR ELVI+R+ G+S WQ L P +G++L G +V +I
Sbjct: 61 MIMLQTVPFVGLFSAMATLVSLNRRYELVIARSAGVSAWQFLLPCCIGALLFGFVSVGLI 120
Query: 121 NPIATSGEKIGIDLIQQWKDN-GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A + + Q + + +D PW++ D IGA+ IL + D
Sbjct: 121 NPLAAHAFSLSEQIETQLRSGKSNTVSADAAPWIRQKTSTGDTIIGARAILNQGLEMSDA 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+D++ I+ RKDA A + + +L+ V ++ G I S + +K + Q+
Sbjct: 181 VFFVLDQQGNIVERKDAAHAYLRDGYWELQDVKTFRNGTI-QPSASDRVPTNLKPEFVQE 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + FY++ K+ + +S QF L+ +P +LVAMTLIAA+VS+ F+
Sbjct: 240 RLARPETIPFYDLPGKIEVA-RSFGLKANAFAMQFDSLVALPFLLVAMTLIAATVSMRFA 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R Q ++ G+ +GF+LY + ++K+FG +G + AA +PV++ + + LL KE
Sbjct: 299 RMGQSATMILGGVVAGFLLYVVSVLVKAFGVAGFVPTAIAAWVPVVVAMFFGVTFLLYKE 358
Query: 360 DG 361
DG
Sbjct: 359 DG 360
>gi|254713811|ref|ZP_05175622.1| hypothetical protein BcetM6_10740 [Brucella ceti M644/93/1]
gi|254717131|ref|ZP_05178942.1| hypothetical protein BcetM_12059 [Brucella ceti M13/05/1]
gi|261218946|ref|ZP_05933227.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
gi|261321555|ref|ZP_05960752.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
gi|260924035|gb|EEX90603.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
gi|261294245|gb|EEX97741.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
Length = 362
Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats.
Identities = 118/363 (32%), Positives = 198/363 (54%), Gaps = 3/363 (0%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RYFF Y++ TLYFLLG L ++D E +++ LP Y++ L+A RV
Sbjct: 1 MIGWTLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRV 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I+QQ+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ +
Sbjct: 61 PFIMQQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFI 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWED 178
+NP+A G ++ WK S + PW++ + + IGAK IL + D
Sbjct: 121 LNPLAAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLAD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T I D++ I R DA A + + +L V+ + G+ P + ++ ++ + +
Sbjct: 181 ATFIQFDEQKNIKDRYDARTATLQDGYWELTDVMRFARGQEPQKLETFRISTQLRPEYVE 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + F ++ K+ + +S + + Q+ L+ +P +L+AMTLIAA+VSL+F
Sbjct: 241 EKLASPETIPFTQLRHKIEVA-RSFGYSANAFDMQYQSLLALPALLMAMTLIAATVSLKF 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R Q ++ G+ +GF+LY + ++K+FG +G + P AA +PV++ LL K
Sbjct: 300 VRFGQSGAMILGGVIAGFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGASFLLHK 359
Query: 359 EDG 361
EDG
Sbjct: 360 EDG 362
>gi|254718822|ref|ZP_05180633.1| hypothetical protein Bru83_04670 [Brucella sp. 83/13]
gi|265983807|ref|ZP_06096542.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
gi|306838744|ref|ZP_07471578.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
gi|264662399|gb|EEZ32660.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
gi|306406146|gb|EFM62391.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
Length = 362
Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 118/363 (32%), Positives = 198/363 (54%), Gaps = 3/363 (0%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RYFF Y++ TLYFLLG L ++D E +++ LP Y++ L+A RV
Sbjct: 1 MIGWTLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRV 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I+QQ+IPF+ L + +LNR ELV++R++G+S WQ L P G++L G+ T+ +
Sbjct: 61 PFIMQQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFI 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWED 178
+NP+A G ++ WK S + PW++ + + IGAK IL + D
Sbjct: 121 LNPLAAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLAD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T I DK+ I R DA A + + +L V+ + G+ P + ++ ++ + +
Sbjct: 181 ATFIQFDKQKNIKDRYDARTATLQDGYWELTDVMRFARGQEPQKLETFRISTQLRPEYVE 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + F ++ K+ + +S + + Q+ L+ +P +L+AMTLIAA+VSL+F
Sbjct: 241 EKLASPETIPFTQLRHKIEVA-RSFGYSANAFDMQYQSLLALPALLMAMTLIAATVSLKF 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R Q ++ G+ +GF+LY + ++K+F +G + P AA +PV++ + LL K
Sbjct: 300 VRFGQSGAMILGGVIAGFVLYVVSVLVKAFSDAGFVPPFVAAWVPVVIATFFGVSFLLHK 359
Query: 359 EDG 361
EDG
Sbjct: 360 EDG 362
>gi|118590093|ref|ZP_01547496.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
gi|118437065|gb|EAV43703.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
Length = 364
Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats.
Identities = 109/360 (30%), Positives = 184/360 (51%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L YF +LK L L A +L+++ D+ E+ + G+ +S+ R A+++A RVPL++
Sbjct: 6 TLSLYFSGRFLKAILGLFLFAAVLIYLFDVLELVRRGGDREGFSVLRVAMISALRVPLLL 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+Q+IPF L I F L+R ELV++RA GIS+WQ P ++ I+LGI ++ V NP
Sbjct: 66 EQVIPFTVLFGAIAAFVTLSRALELVVARASGISVWQFSLPAILVGIILGILSITVYNPA 125
Query: 124 ATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A ++ ++ + +S W++ + + AK++L + T
Sbjct: 126 AVWFQQKSDEVAAGLFGSEQSFLLQSSNDVWVRQDGLDGESVLLAKQLLEGGTLLRGVTI 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
T DK R +AD A + + L+ + Y + P ++ + ++
Sbjct: 186 FTFDKDGTFRERIEADEARLGDQIWYLENAIVYTTEQDPQPYGQYQISTFLTATEVRESI 245
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S SF+ + + + + ++ YR Q+ L+ PL+LVAM LIAA+VSL+ SR
Sbjct: 246 GSPESISFWNLPRFIELA-RNAGLPAYRYNLQYQTLLARPLLLVAMILIAAAVSLKVSRF 304
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++ GI SGF+LY + + K FG +GI+ P+ AA P I + + + ILL +EDG
Sbjct: 305 GGLGSMILGGILSGFVLYVLTELAKDFGGAGIVPPLVAAWAPGIFGVLMGLTILLNQEDG 364
>gi|148255227|ref|YP_001239812.1| putative permease [Bradyrhizobium sp. BTAi1]
gi|146407400|gb|ABQ35906.1| putative permease [Bradyrhizobium sp. BTAi1]
Length = 365
Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 87/361 (24%), Positives = 167/361 (46%), Gaps = 3/361 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RYF +L + + +L+ ++D E+ + L + S A + RVP +
Sbjct: 6 NTLGRYFAGRFLVSAVGVFASIFVLLVLVDYIEMVRKTSGLASASALMVAETSLFRVPQL 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++++PF L+ + + L+R ELV++RA G+S WQ + P + +I+LG+ + NP
Sbjct: 66 LEKMMPFCVLIGAMTCYLALSRRLELVVARAAGVSAWQFIAPALASAIVLGLMATTLYNP 125
Query: 123 IATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ + ++ + + G + W+ NP + I A + + T
Sbjct: 126 MSANLRELSKRMEAELFGAAPGGGVQDASGFWLNQINPDGSVIINAARSEQQGVRLTGLT 185
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
D + R +A A + + + K V + P+D+ + L + +
Sbjct: 186 LFRFDTEKHFKDRIEAREATLEDGQWVFKSVRRFSLDAPPVDEPTFILPTSLTPAQVRNS 245
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ SF+++ + S S+ F Q++ LI P +L AM ++AASVSL F R
Sbjct: 246 FSTPETVSFWQLPSYIRSSE-SSGFATAGYRLQYHKLIAQPFLLAAMVMLAASVSLRFFR 304
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ +V G+ +GF+LY + + + K+ ++ P+ AA +PV + + LL +ED
Sbjct: 305 MGGVQKMVLSGVGAGFLLYVLSKVTEDLSKAALMDPIVAAWLPVFVGGLTGFMALLYQED 364
Query: 361 G 361
G
Sbjct: 365 G 365
>gi|254503227|ref|ZP_05115378.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
gi|222439298|gb|EEE45977.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
Length = 364
Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 107/364 (29%), Positives = 180/364 (49%), Gaps = 7/364 (1%)
Query: 4 ILWR----YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
IL R YF ++K L L A +L+F+ D+ E+ + + +++ R A ++ RV
Sbjct: 2 ILGRTLSVYFSGRFIKAILGLFLFAAVLLFLFDVLELVRRGSDREGFTVMRVAYISLLRV 61
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
PL+++Q+IPF L I F L+R ELV++RA GIS+WQ P V+ + LGIF++ V
Sbjct: 62 PLLLEQVIPFTVLFGAIAAFVTLSRALELVVTRAAGISVWQFSTPAVLVGLFLGIFSITV 121
Query: 120 INPIATSGEKIGIDLIQQWK--DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
NP A ++ + D +S W++ + + A ++L
Sbjct: 122 YNPAAVYLQQKSEEAAAGLFGADQTFLLQSSGEVWVRQDGLDGESVLRASQLLDNGTRLL 181
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
T T D+ R +A+ A + N+ L + Y P + ++ +
Sbjct: 182 RVTVFTFDEDGTFRERIEAEQARLGNETWYLDNAIVYTTENDPQSYSVYQISTFLTATEV 241
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ S SF+ + + + + ++ YR Q+ L+ PL+L+AM LIAA+VSL+
Sbjct: 242 RESIGSPESISFWNLPRFIDLA-RNAGLPAYRYNLQYQSLLARPLLLIAMILIAAAVSLK 300
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
SR ++ GI SGF+LY + + K FG +GI+ P+ AA P I + + + ILL
Sbjct: 301 VSRFGGLGRMILGGILSGFVLYVLTELAKDFGGAGIVPPLVAAWAPGIFGVLMGLTILLH 360
Query: 358 KEDG 361
+EDG
Sbjct: 361 QEDG 364
>gi|146340303|ref|YP_001205351.1| putative permease [Bradyrhizobium sp. ORS278]
gi|146193109|emb|CAL77120.1| putative permease [Bradyrhizobium sp. ORS278]
Length = 365
Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats.
Identities = 90/361 (24%), Positives = 171/361 (47%), Gaps = 3/361 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RYF +L + + +L+ ++D E+ + L + S A + RVP +
Sbjct: 6 NTLGRYFAGRFLVSAVGVFASIFLLLVLVDYIEMVRRTSGLASASALMVAETSLFRVPQL 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++++PF L+ + + L+R ELV++RA G+S WQ + P + +I+LG+ + NP
Sbjct: 66 LEKMMPFCVLIGAMTCYLALSRRLELVVARAAGVSAWQFIAPALASAIVLGLMATTLYNP 125
Query: 123 IATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ + ++ + + + G + W+ NP + I A + + T
Sbjct: 126 MSANLRELSKRMEAELFGSAPGGGVQDASGFWLNQLNPDGSVIINAARSEQQGVRLTGLT 185
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
D KN+ R +A A + + + K V + P+D+ + L + +
Sbjct: 186 LFRFDTKNRFKDRIEAREASLEDGQWVFKSVRRFSLDAPPVDEPTFILPTTLTPAQVRNS 245
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ SF+++ + S S+ F Q++ LI P +L AM ++AASVSL F R
Sbjct: 246 FSTPETVSFWQLPSYIRSSE-SSGFATAGYRLQYHKLIAQPFLLAAMVMLAASVSLRFFR 304
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + + LL +ED
Sbjct: 305 MGGVQKMVLSGVGAGFLLYVLSKVTEDLSKAALMDPIAAAWLPVFVGGLTGFMALLYQED 364
Query: 361 G 361
G
Sbjct: 365 G 365
>gi|27379217|ref|NP_770746.1| permease [Bradyrhizobium japonicum USDA 110]
gi|27352368|dbj|BAC49371.1| bll4106 [Bradyrhizobium japonicum USDA 110]
Length = 363
Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats.
Identities = 83/363 (22%), Positives = 165/363 (45%), Gaps = 3/363 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ L RYF ++ L +L+ ++D E+ + L + S A + RVP
Sbjct: 2 LTNTLGRYFAGRFVVAALGVFASIFLLLVLVDYIEMVRKTSGLASASAIMVAETSLFRVP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+++++ PF L+ + + L+R ELV++RA G+S WQ ++P + ++L+G+ +
Sbjct: 62 QLLEKLTPFCMLIGAMTCYLALSRRLELVVARAAGVSAWQFISPALGSALLIGVIATVAY 121
Query: 121 NPIATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
NP++ + ++ + + + G + W+ I A + +
Sbjct: 122 NPMSANLRELSKRMEAELFGSAPGGGIQDASGFWLNQVTNDGQTIINAARSEQQGVRLTG 181
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T D + R +A A + + + V + PI++ + + +
Sbjct: 182 LTLFRFDTEQHFKERVEAREAELEVGQWIFRNVRRFSLDGPPIEQAVLAIPTTLTEAQVR 241
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ SF+++ + S S+ F Q++ L+ P +L AM ++AASVSL F
Sbjct: 242 NSFSTPETVSFWQLPSYIRSSE-SSGFATAGYRLQYHKLLAQPFLLAAMVMLAASVSLRF 300
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + +V G+ +GF+LY + + + K+ ++ P+AAA +PV++ L LL +
Sbjct: 301 FRMGGVQKMVLSGVGAGFLLYVLSKVTEDLSKAELMHPIAAAWLPVVVGGLTGFLALLYQ 360
Query: 359 EDG 361
EDG
Sbjct: 361 EDG 363
>gi|182677644|ref|YP_001831790.1| permease YjgP/YjgQ family protein [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182633527|gb|ACB94301.1| permease YjgP/YjgQ family protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 362
Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats.
Identities = 96/359 (26%), Positives = 156/359 (43%), Gaps = 1/359 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY +L L +++VIDL E+ + G P + S A L+ R P +
Sbjct: 5 PTLGRYLSSRFLFMILAVFGTIFSMIYVIDLVEMLRRAGNRPGATASLIAFLSFLRAPSV 64
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+QI+PF L + F NL R EL+++RA GISIWQL+ P + ++ +GIF+V + NP
Sbjct: 65 SEQILPFCVLFGTMATFINLTRRLELLVARAAGISIWQLMMPPLGIALAIGIFSVTLYNP 124
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I+ + + + Q++ W++ ++ I A+ + T
Sbjct: 125 ISAMMKHRADGIETELFGGIGGQETKGGLWIRQNSVDGQAIIRAETVEAGGSRLGGVTLY 184
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
T K R +A A + ++ + G + L + +
Sbjct: 185 TYGKDGSFEARIEARHAKLVPGVWQMTEARIIVPGEEIQEAGLYLLATNLTPGEVSENIV 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S F+E+ + + + + + R QF L+ PL +AM LIAA+ SL F R
Sbjct: 245 TPESVPFWELQSFRAATELAGL-DSTRYRLQFQLLLARPLFFIAMVLIAAAFSLRFFRFG 303
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+V G +GF+LY + G SG+L AA P ++ L L LL +EDG
Sbjct: 304 GITKMVCGGAGAGFVLYIVSKFTGDLGTSGLLSAPIAAWSPAVVASMLGALALLNQEDG 362
>gi|154246776|ref|YP_001417734.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
gi|154160861|gb|ABS68077.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
Length = 364
Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats.
Identities = 91/365 (24%), Positives = 164/365 (44%), Gaps = 5/365 (1%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G IL YF + + + L + L+ ++D E+ + + ++ A++ R
Sbjct: 1 MIGRILGFYFARRFASAVVLIFLSCVTLIVLVDFLEMARRTADREQVTVGLLALVTLYRA 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P +Q++PF L I F L+R ELV++RA+G+S+WQ + P V+ + L+G+F+ V
Sbjct: 61 PSFTEQLMPFAVLFGAISTFVLLSRRLELVVARAVGLSVWQFITPPVLVAFLIGVFSTTV 120
Query: 120 INPIATSGEKIGIDLIQQW---KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
NP++ ++ + + +G + W++ + I A+
Sbjct: 121 FNPVSADFKERANQIEGEIFGSSSSGLLPQGKKEFWVRQQSVDGQSIIQAQATRQGGRAL 180
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
DK ++++ R +A A + + L G ++ + +
Sbjct: 181 SGVVVFEFDKADRLVERVEARSATLGDGAWILTDARVLVPGLDHQHYDTYLIATNLDPKQ 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
Q+ + SF+++ + + +S F R Q L+ P +LVAM LIAA V L
Sbjct: 241 IQESLIAPETVSFWQLPAAIRSAEQSG-FGAERYRLQLQSLLARPFLLVAMVLIAAVVGL 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + G+ +GF+LY + + G +G + PVAAA P + I L +LILL
Sbjct: 300 RVFRFGGVGQTILGGVLAGFLLYVGTKLAEDLGDAGFVHPVAAAWFPAVAGILLGVLILL 359
Query: 357 QKEDG 361
+EDG
Sbjct: 360 HREDG 364
>gi|307946742|ref|ZP_07662077.1| permease [Roseibium sp. TrichSKD4]
gi|307770406|gb|EFO29632.1| permease [Roseibium sp. TrichSKD4]
Length = 364
Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats.
Identities = 105/364 (28%), Positives = 183/364 (50%), Gaps = 7/364 (1%)
Query: 4 ILWR----YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
IL R YF + K+ L L A +L+F+ D+ E+ + G+ +++ R A+++ RV
Sbjct: 2 ILGRTLAIYFSARFFKSILGLFLLAAVLIFLFDVLELVRRGGDQEGFTVVRVALISILRV 61
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
PL+++Q+IPF L +I+ F L+R ELV++RA GIS+WQ P VV +++G +V+
Sbjct: 62 PLLLEQVIPFAVLFGSILAFVTLSRALELVVARASGISVWQFAAPAVVVGLIIGTLSVVA 121
Query: 120 INPIATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
NP+A + + + ++ W++ + + AK++L
Sbjct: 122 YNPLAVWLQHRSDEAAAGLFGSEQSFLLQTTQDVWVRQDGLDGESVLLAKQLLDGGTRLL 181
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
D T DK+ R +A A + + L+ V Y R P ++ +
Sbjct: 182 DVTIFAFDKEGSFKERVEAATARLGDQIWFLEDVTVYTTERDPQQYGRYEVSTYLTATEV 241
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ S SF+ + + + + ++ YR Q+ L+ PL+L AM +IAA+VSL
Sbjct: 242 RESIGSPESISFWSLPRFIELA-RNAGLPAYRYTLQYQTLLARPLLLTAMIIIAAAVSLR 300
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
SR ++ GI +GF+LY + + K FG +GI+ P+ AA P I + + + ILL+
Sbjct: 301 VSRFGGLGSMILGGIVAGFVLYVLSELAKDFGGAGIVPPIVAAWAPGIFGVLMGLTILLK 360
Query: 358 KEDG 361
+EDG
Sbjct: 361 QEDG 364
>gi|254473284|ref|ZP_05086681.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
gi|211957400|gb|EEA92603.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
Length = 363
Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats.
Identities = 100/360 (27%), Positives = 182/360 (50%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y K +LK+ L L A +L+ + D+ E+ + G+ +S+ R A ++A RVPL++
Sbjct: 5 TLSLYISKRFLKSILALFLFAAVLILLFDVLELVRRGGDREGFSLLRIAAISALRVPLLL 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+Q+IPF L +I F L+R+ ELV++RA GIS+WQ P ++ + +GI +V+ NP
Sbjct: 65 EQVIPFAVLFGSIWAFVTLSRSLELVVARAAGISVWQFTAPALLTGLFIGIASVIGYNPG 124
Query: 124 ATSGEKIGIDLIQQWKD--NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A ++ ++ + + W++ + + + A+ I + T
Sbjct: 125 AVYLQQKSDEVAEGLFSVEQTYLLEGSGEVWLRQNGTDGESVLHARHIGGQGATLNGVTI 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ D++ + R +A A++ +L V Y P ++ +++ + ++
Sbjct: 185 FSFDRQGEFSERIEARRAVLAEGMWRLTDAVVYALDTDPQHYDNYSVSTFLTPTEVKESI 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S SF+ + + + S ++ + YR Q+ L+ PL+LVAM +IAA+VSL SR
Sbjct: 245 GSPESISFWSLPRFIELSQRAGL-PAYRYSLQYQTLLAKPLLLVAMIVIAAAVSLRVSRF 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++ +GI +GF+LY + I K G +GI+ AA P + + + ILL +EDG
Sbjct: 304 GGIGRLIIWGIIAGFVLYAVSEISKDLGGAGIVPTAVAAWAPGVFGVLMGFTILLNQEDG 363
>gi|218672883|ref|ZP_03522552.1| putative permease protein [Rhizobium etli GR56]
Length = 340
Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 137/340 (40%), Positives = 203/340 (59%), Gaps = 2/340 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RYFF+ YL TT +FL+G + F++D +E +M LP Y+I G V+ A R+P
Sbjct: 2 MFGTLSRYFFRRYLATTGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+QQ IPFI L V + V LNR ELV++RA GIS+WQ + PF+ GS+ LG+ T+ +
Sbjct: 62 LILQQTIPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGLLTMTAL 121
Query: 121 NPIATSGEKIGIDLIQQWKD-NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A G++ + + W+ N +K+ IPW++ + + D+ IGA+ + D
Sbjct: 122 NPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLVDA 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 182 VLIHFDSSGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQE 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+++ +++ + KS ETQF L+ PL+LVAMTLIAA+VSL+FS
Sbjct: 242 RLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSLKFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
R NQ R ++ GI SGFMLY I ++K+FG SG++ P A
Sbjct: 301 RFNQSRPVILGGILSGFMLYVITVLVKAFGSSGVVPPFVA 340
>gi|323137698|ref|ZP_08072774.1| permease YjgP/YjgQ family protein [Methylocystis sp. ATCC 49242]
gi|322396995|gb|EFX99520.1| permease YjgP/YjgQ family protein [Methylocystis sp. ATCC 49242]
Length = 361
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 88/362 (24%), Positives = 162/362 (44%), Gaps = 2/362 (0%)
Query: 1 MPGI-LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G+ + RYF +++T L L+FV+ E+ + + P A++ A +V
Sbjct: 1 MIGVTITRYFAWRFMRTILAIFFTIFCLMFVVVFVEMLRRASDNPQAGAGMVALMTAMKV 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + I+PF L ++ F +L R EL+++RA G+S+WQ + P V+ ++L+G+F+V V
Sbjct: 61 PAAAEMILPFAVLFGSMATFVDLTRKLELIVARAAGMSVWQFITPPVLTALLIGVFSVAV 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP++ S ++ + + + D W++ + A
Sbjct: 121 YNPLSASMKQRSDQMELELFGVPGSLRIDHGVWLRQHGVDGLAVMHAMGTAKGGTELTFV 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ + R +A A + L + G S L + +
Sbjct: 181 SVNIYSPNGGFLERVEAQSARLEPGVWVLNGAIVSAPGEPARPVASYMLATDLTPEQAAA 240
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+E+ + + + ++ + + QF L+ PL+LVAM L+AAS SL F
Sbjct: 241 ATTPPQGTPFWELPEMTARTTEAGL-DSTGYRLQFQTLLARPLLLVAMVLVAASFSLRFF 299
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R ++ G+ +GF+LY + ++ G +G++ P+ AA P ++ L L LL E
Sbjct: 300 RFGGVAKTLSGGVAAGFVLYIVTKVLSDLGGAGLISPLVAAWSPALVGSMLGTLTLLYSE 359
Query: 360 DG 361
DG
Sbjct: 360 DG 361
>gi|220925666|ref|YP_002500968.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
2060]
gi|219950273|gb|ACL60665.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
2060]
Length = 362
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 88/358 (24%), Positives = 154/358 (43%), Gaps = 1/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY L+ L LV+ +D E+ + GE A L+ R P I
Sbjct: 6 TLGRYIAGRLLRMIAGVFLTVFALVYTLDFVELMRRAGETQGIGALTVARLSLLRTPSIA 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+QI+PF L + L+R ELV++RA GIS WQ L P V ++ +G V NP+
Sbjct: 66 EQIMPFAILFGAMGALLQLSRKLELVVARAAGISAWQFLQPGVFVALAVGALMVGAYNPM 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + ++ ++ + ++ S W++ + + A+ + +
Sbjct: 126 AAALKQHSTEIEARIFSRSNRGGSGKDLWIRQRSVDGQAIVRAETAIEGTTTLAGVSVFA 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D + + +A A +++ +L+ P ++ + + ++
Sbjct: 186 FDDQGTFTQQIEARQATLHDGYWELQDARVLAKDSQPESYDTYLVASNLVPSQVRQRFTP 245
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S F+++ ++ S ++ + R Q L+ P++ VAM L+AASVSL F R
Sbjct: 246 PDSVPFWQLGDTIARSERAGL-DATRYRLQRAVLLARPMLFVAMVLVAASVSLRFFRFGG 304
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ G+ +GF LY +M+ G SGI+ AA P ++ L L LL +EDG
Sbjct: 305 IGRMALAGVAAGFALYVARQVMEGLGASGIVAAPVAAWFPAVVGSLLGTLALLYQEDG 362
>gi|260427738|ref|ZP_05781717.1| permease, YjgP/YjgQ family [Citreicella sp. SE45]
gi|260422230|gb|EEX15481.1| permease, YjgP/YjgQ family [Citreicella sp. SE45]
Length = 364
Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats.
Identities = 81/366 (22%), Positives = 167/366 (45%), Gaps = 11/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + + + L I V ++DL E + G + S ++ + A R+P +
Sbjct: 2 ILHRYFARRFFWMFMSILSVFAIFVGLVDLVEQIRKFG--GDISFAQKVQITALRLPEGM 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ +F L R+SELV+ RA G S L ++ ++ + TV ++NP+
Sbjct: 60 YEILPLVMILATAALFLMLARSSELVVVRAAGRSGLTALMGPMMVALAISGVTVAMLNPL 119
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKS--DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K DL + ++++G S W++ + I A + P+ + D +
Sbjct: 120 VAATSKRASDLAESYENDGASVISIGKEGLWLRQGSSDGQAVIRAARANPDATVLYDVSF 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG------RIPIDKNSTTLNIPIKMD 235
+ + I R +A A + + L+ + G + + + +
Sbjct: 180 LQYAEDGGPIRRVEAAEAALEDGAWALRDAKVWPLGTRANPEAAAERHDRLRIASDLTQN 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + ++ + +++ ++ ++ F R E F + P+ LVAM L+AA +
Sbjct: 240 DIRDRFGKPSAVAIWDLPDFINGLEQAG-FSARRHEVWFQMELARPIFLVAMVLVAAGFT 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + + V + GF LY + + G++G L P+ AA +P + ++ L++ ++
Sbjct: 299 MRPARLGRTGLYVLAAVLLGFGLYYVRNFAQIMGENGQLPPLFAAWVPPVASLMLALGLV 358
Query: 356 LQKEDG 361
LQ EDG
Sbjct: 359 LQMEDG 364
>gi|56697305|ref|YP_167671.1| YjgP/YjgQ family permease [Ruegeria pomeroyi DSS-3]
gi|56679042|gb|AAV95708.1| permease, YjgP/YjgQ family [Ruegeria pomeroyi DSS-3]
Length = 365
Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats.
Identities = 84/366 (22%), Positives = 157/366 (42%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + ++++ L L + LV +IDL E + S+ + L P I
Sbjct: 2 ILDRYFARRFIQSFLVIGLVFLGLVLLIDLIEQLRRFEGF-EVSMGQLVGLTLLNAPAAI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ IV+F L R+SELV++RAIG S + L V+ ++++G+ V +NPI
Sbjct: 61 SEILPLLMILSTIVLFVGLARSSELVVTRAIGRSGIRALVGPVLVALVIGLLAVTTLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ L +++ G SD W++ + I A + D T
Sbjct: 121 VAATAVRYQTLADTYRNGGPSVLSLSDEGLWLRQGDAGGQSVIHATGFGGDGVTLFDVTI 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPIKMD 235
++ R A+ A + + K L+K + + + + + +
Sbjct: 181 LSYAPDGSAQRRTIAESAQLQDGKWLLQKAKVWPLKVGQNPEANAVYHDRIEMPTSLTQE 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + + S Y++ + + ++ F R + + PL LV+M L+ A+ +
Sbjct: 241 RIRDSLGRRETVSIYDLPQTIEQLQQAG-FSTKRHKVWLQVELARPLFLVSMVLVGAAFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + V + GF LY + G++G + AA P + I L+ +L
Sbjct: 300 MRHTRFGGTGLAVLSAVLLGFTLYFTRNFAQILGENGQIPVALAAWAPPVAAIMLTFGLL 359
Query: 356 LQKEDG 361
L EDG
Sbjct: 360 LHAEDG 365
>gi|115525295|ref|YP_782206.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisA53]
gi|115519242|gb|ABJ07226.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
BisA53]
Length = 361
Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats.
Identities = 87/360 (24%), Positives = 163/360 (45%), Gaps = 3/360 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RYF ++ + LG +L+ +D ++ + G A + RVP +
Sbjct: 4 NTLGRYFAGKFVTAAVGVFLGLFVLLVFVDYIDLLRRSGGRA-IPALLIAQTSMFRVPQL 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++++PF L+ + + L+R ELV++RA G+S WQ + P + ++LLG F +V NP
Sbjct: 63 LERLMPFCILIGAMTCYLALSRRLELVVARAAGVSAWQFMAPALWSALLLGTFATMVFNP 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ + ++ + D W+ N + I A + + T
Sbjct: 123 VSANLQERAKQNEASMFGDSSGSLQDASGFWINQVNSEGQAIINASHSQQQGVLLTGLTV 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
R +A A + +LK V Y P+++++ L + +
Sbjct: 183 FRFATDFSFKDRLEAREATLEPGFWRLKSVRRYSLDAPPVEEDTLLLPTTLTQAQVRNSF 242
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ SF+++ + S S+ F Q++ L+ P +L AM ++AASVSL F R
Sbjct: 243 STPETVSFWQLPSYIRSSE-SSGFATAGYRLQYHKLLARPFLLAAMVMLAASVSLRFFRF 301
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +V G+ +GF+LY + + + K+ ++ P+AAA +PV + + LL +EDG
Sbjct: 302 GGVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVFVGGLAGFMALLYQEDG 361
>gi|163735796|ref|ZP_02143225.1| permease YjgP/YjgQ family, putative [Roseobacter litoralis Och 149]
gi|161390882|gb|EDQ15222.1| permease YjgP/YjgQ family, putative [Roseobacter litoralis Och 149]
Length = 365
Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats.
Identities = 86/366 (23%), Positives = 155/366 (42%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + + + + L+ ++DL + + + S + L P I
Sbjct: 2 ILHLYFARRFASWLMIAFIALFALIALVDLVDQTRRFADR-GVSAAGIFELVILNTPQTI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QI+P I L+ + F +L R+SEL+ +RA G S L V I+LG +NPI
Sbjct: 61 SQILPLIVLLATVAFFLSLARSSELIATRASGRSAMGALIAPVGVVIVLGTLATTTLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K +L Q ++ G S W++ + I A + P+ + D T
Sbjct: 121 VAATSKKYNELSQTYRTGGGSTFSISTEGLWLRQGTDDGQMVIRAWRSNPDASVLFDVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR------IPIDKNSTTLNIPIKMD 235
+ + + R AD A + + L+ V ++ R + S T+ + ++
Sbjct: 181 LAYEVIGTPVRRIHADSAELKDGAWLLRNVKDWPLARGINSEGNATEHRSLTIPSSLTVE 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
++ ++ S +E+ + N++ F + + + PL LVAM LIA++ +
Sbjct: 241 RIRESFGHPSTISIWEMNDFIKQLNQAG-FSSLQHRVWLQSELARPLFLVAMVLIASAFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + V + GF LY + + G++G L AA P I ++ L+ L
Sbjct: 300 MRHTRFGGTGVAVLAAVLLGFALYFVRSFGLILGENGQLPVYLAAWAPPIASVLLAFGPL 359
Query: 356 LQKEDG 361
L EDG
Sbjct: 360 LHAEDG 365
>gi|170743204|ref|YP_001771859.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
gi|168197478|gb|ACA19425.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
Length = 362
Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats.
Identities = 92/358 (25%), Positives = 156/358 (43%), Gaps = 1/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY +L+ L LV+ +D E+ + GE P S A L+ R P +
Sbjct: 6 TLGRYIAARFLRMIAGVFLTVFALVYTLDFVELMRRAGEAPGASALTVAHLSLLRTPAVA 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+QI+PF L + L+R ELV++RA GIS WQ L P V+ ++ +G V NP+
Sbjct: 66 EQIMPFAILFGAMGALLQLSRKLELVVARAAGISAWQFLQPGVLVAVGIGALMVGAYNPL 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A S ++ + + K W++ + + A + T T
Sbjct: 126 AASLKQRSTQVEARIFARSTKGGLSNDLWIRQRSVDGQAIVRASTAIEGTTSLAGVTIFT 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D + + +A A +++ +L+ P ++ + + ++
Sbjct: 186 FDAQGAFGQQIEARRATLHDGYWELQDARVLTQDSGPESYDTYLVASNLAPSQVRQRVTP 245
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S F+++ + ++ S ++ + R Q L+ P++ VAM L+AASVSL F R
Sbjct: 246 PDSVPFWQLSETIARSERAGL-DAARYRLQRAVLLARPMLFVAMVLVAASVSLRFFRFGG 304
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ G+ +GF LY +M+ G SGI+ AA P ++ L L LL +EDG
Sbjct: 305 IGRMALAGVAAGFALYVARQVMEGLGASGIVAAPVAAWFPAVVGSLLGTLALLYQEDG 362
>gi|86138692|ref|ZP_01057265.1| permease, YjgP/YjgQ family protein [Roseobacter sp. MED193]
gi|85824752|gb|EAQ44954.1| permease, YjgP/YjgQ family protein [Roseobacter sp. MED193]
Length = 367
Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats.
Identities = 89/367 (24%), Positives = 155/367 (42%), Gaps = 12/367 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y+ + +L+ M LV +IDLNE + E + S S L P +
Sbjct: 3 LDLYYARRFLQWFAVICGVLMTLVMLIDLNEQIRRFDEF-DVSASEIVGLTLLNAPAALS 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ +P I ++ IV+F L R+SELV++RAIG S + L V+ + LLGI V +NPI
Sbjct: 62 EFLPLIMILTTIVLFVGLARSSELVVTRAIGRSGIRALAAPVLVAGLLGILAVSTLNPIV 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKS--DIIPWMQISNPQQDIFIGAKKILP--ENHIWEDFT 180
+ + L ++ G S W++ +P I A +N + D T
Sbjct: 122 AATTNLSKTLADTYRTGGPSALSFSGEGLWLRQGSPSGQSVIHASSYGGGSDNIVLYDVT 181
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPIKM 234
+ + I + A+ A + ++ L K + R + L +
Sbjct: 182 ILAYAPQGGPIRQIIAESARLDGEEWLLHKAKAWHMTAGLNPERSAATHETLRLPTTLTQ 241
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D + S Y++ + ++ F R + + + PL L+AM L+ A+
Sbjct: 242 DRIRDRLGSADGISVYDLPTTIRDLAQAG-FSTKRYQVWYQVELARPLFLIAMVLVGAAF 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ +R + V + GF LY + + G++G + AA P + +I L++ +
Sbjct: 301 TMRHTRFGGTGLAVLTAVLLGFGLYFVRNFAQILGENGQIPVALAAWAPPVASILLTMGL 360
Query: 355 LLQKEDG 361
LL EDG
Sbjct: 361 LLHAEDG 367
>gi|254486546|ref|ZP_05099751.1| permease, YjgP/YjgQ family [Roseobacter sp. GAI101]
gi|214043415|gb|EEB84053.1| permease, YjgP/YjgQ family [Roseobacter sp. GAI101]
Length = 365
Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats.
Identities = 87/366 (23%), Positives = 155/366 (42%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + ++ + L+ ++D+ E + E + R + P +
Sbjct: 2 ILHLYFARRFVTGFVLISAVLFALLILVDMVEQARKFAEH-DIGWQRLFGMTLLNTPETL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ +V+F +L R+SELV++RA G S L V + ++GI V ++NPI
Sbjct: 61 NLILPLIMILATVVLFLSLARSSELVVTRASGRSALSALQAPVWVAFIIGIMAVGMLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K I L + + G SD W++ Q I A + + + D T
Sbjct: 121 VAATAKRYIQLSESIRAGGVSTLSISDEGLWLRQGGDQGQTVIRAWRSNADASVLYDVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG------RIPIDKNSTTLNIPIKMD 235
+T + I R +A A + +D L + + TL + +D
Sbjct: 181 LTYAAQGGPIRRIEASSAALEDDGWVLTGAKSWPLELGVNAEGNAEVFETLTLPSTLTLD 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
++ S Y++ + + F R + + P LVAM L+A++ +
Sbjct: 241 RIRESITDPGVVSIYDLPGFIHQLELAG-FSPRRHKVWLQTELARPFFLVAMVLVASAFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + V + GF LY I + + G++G + V AA P + +I L+I +L
Sbjct: 300 MRHTRFGGTGVAVLASVLLGFGLYFIRSFAQILGENGQIPVVLAAWAPPVASILLAIGLL 359
Query: 356 LQKEDG 361
L EDG
Sbjct: 360 LHAEDG 365
>gi|298291095|ref|YP_003693034.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
gi|296927606|gb|ADH88415.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
Length = 361
Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats.
Identities = 98/364 (26%), Positives = 167/364 (45%), Gaps = 6/364 (1%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L YF + +L L +G L+ +IDL E+ ++GE + +L R+
Sbjct: 1 MIGRTLGVYFGRRFLGAVLGIFVGCAGLIMLIDLLELSRRVGER-DVDFGTLMLLVVYRM 59
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P +Q++PF L I F L+R ELV++RA GIS WQ + P + ++LLG+F+ V
Sbjct: 60 PFFTEQLLPFAVLFGAIGTFLTLSRRLELVVARAAGISAWQFIAPACLLALLLGVFSTTV 119
Query: 120 INPIATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
NP++ + L + + G + WM+ + I A
Sbjct: 120 YNPVSADFKDRASRLEAEIFNRQTGLFAMTTGGFWMRQQSVDGQAIIQAAATSDGGRQLT 179
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+K+ R +A AI+ +L+ G + ++ L + +
Sbjct: 180 GVNVFLFGADDKLTERIEAVRAILEPGAWRLEHARVLTPGIGLQEYDAYMLATNLTPNQV 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q+ + + F+++ + + + F R Q+ L+ P++L+AM LIAASVSL
Sbjct: 240 QETLQS-DTVPFWQLPAAIDAATR-VGFGAERYRLQYQSLLARPMLLLAMVLIAASVSLR 297
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + G+ +GF+LY + + G++GI+ PV AA P ++ + ILILL
Sbjct: 298 VFRFGGIGQTILGGVAAGFLLYVSTKLAEDLGEAGIVHPVIAAWFPAVVGALMGILILLH 357
Query: 358 KEDG 361
+EDG
Sbjct: 358 REDG 361
>gi|259419234|ref|ZP_05743151.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
gi|259345456|gb|EEW57310.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
Length = 368
Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats.
Identities = 86/369 (23%), Positives = 152/369 (41%), Gaps = 13/369 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y+ K + + L M LV +IDL+E + + + L P +
Sbjct: 2 ILDLYYAKRFFQWFLVIAAVLMSLVMLIDLSEQFRRFDG-QDLQFGQLLELTLLNTPAAL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P I ++ IV++ + R+SELV++RA+G S + L P VV +++LG V +NPI
Sbjct: 61 NEFLPLIMILTTIVLYVGMARSSELVVTRALGRSGIRALLPPVVVALILGGLAVSTLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK---QKSDIIPWMQISNPQQDIFIGAKKI--LPENHIWED 178
+ L + ++ G S W++ I A EN D
Sbjct: 121 VAATTNRFDSLSESYRQTGGPAAVSLSGEGLWLRQGGQNGQSVIHAANYRGDAENLFLYD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPI 232
+ +T R A A + + L+ +Q R + L +
Sbjct: 181 VSILTYTPDGGPTRRTIAAEARLDGEDWVLRDAKVWQLIVGVNPERSAKSYDELRLPTTL 240
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + S YE+ + + +++ F R + + PL LVAM L+ A
Sbjct: 241 TNERIRDTLGYAEGISIYELPQTIKSLSEAG-FSTTRFQVWLQVELARPLFLVAMVLVGA 299
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ ++ +R I V + GF LY + + G++G + + AA P + +I L++
Sbjct: 300 AFTMRHTRLGGTGIAVLTSVLLGFALYFVHNFARILGENGQIPILLAAWAPPVASILLTM 359
Query: 353 LILLQKEDG 361
+LL EDG
Sbjct: 360 GLLLHAEDG 368
>gi|288958014|ref|YP_003448355.1| hypothetical protein AZL_011730 [Azospirillum sp. B510]
gi|288910322|dbj|BAI71811.1| hypothetical protein AZL_011730 [Azospirillum sp. B510]
Length = 364
Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats.
Identities = 87/361 (24%), Positives = 170/361 (47%), Gaps = 3/361 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY + ++ ++ + +V ++D E+ + G P+ + +A ++P I
Sbjct: 5 PTLSRYIGRQFIFWFCLLMVILLAIVLLLDTVELLRRAGTKPHVTFGLVVEMALLKLPEI 64
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
QQI PF+ L + F+ L R++ELV++RA+G+S WQ L P + + +G+ V ++NP
Sbjct: 65 GQQIFPFVILFAGMFTFWRLTRSAELVVARAVGVSAWQFLMPVMFAAAAIGVVKVTLVNP 124
Query: 123 IATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ L ++ + S W++ +N + FI A+ + P +
Sbjct: 125 VGAVFIAKYDQLQDRYLKLQSSSLNISRSGLWLRQTNETEQFFIHAELVNPATFELSNVV 184
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
D + R DA A++ K +L+ + + + P +S T+ + M ++
Sbjct: 185 VFLFDADQNYLARVDAPSAVLRERKWELQDAILNRAKKDPEKLDSYTIPTELDMATIEES 244
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ SF+E+ + + + ++ F R + L+ P + +AM L AA+ SL R
Sbjct: 245 FAPPETISFWELPRFI-HTLETTGFPAVRHRLHYQSLLAQPFLFLAMVLFAAAFSLRLPR 303
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+V G+ +GF+L+ + ++++FG S + + AA P +++ L I LL ED
Sbjct: 304 RGGTMAMVTGGVLTGFVLFVMTDVVRTFGMSETIPIIMAAWSPAGISLLLGIAALLHLED 363
Query: 361 G 361
G
Sbjct: 364 G 364
>gi|89070357|ref|ZP_01157664.1| putative permease [Oceanicola granulosus HTCC2516]
gi|89044004|gb|EAR50179.1| putative permease [Oceanicola granulosus HTCC2516]
Length = 366
Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats.
Identities = 83/366 (22%), Positives = 152/366 (41%), Gaps = 9/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + YL + L +L+ +DL E N++ + S L P +
Sbjct: 2 ILHRYFARRYLTSFLTVSGLFFVLLGAMDLVEQANEVSDEAAARWSDVLALTLLNAPASL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ I +F L R+SELV++RA G S L V+ L+G + V+NP+
Sbjct: 62 YEILPLLVILSTIALFLGLARSSELVVTRAAGRSALHALVAPVLVVALIGAVALAVLNPL 121
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K + +D G W++ P+ I A + + T
Sbjct: 122 VAATSKEYEARVSALEDRGASIVSVDAGGLWLRQGGPEGQSVIRAARANTDGTELSGVTF 181
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS------TTLNIPIKMD 235
IT ++ + R DA A + +L + + G + + + + +
Sbjct: 182 ITFAEEGRPSRRIDARRARLEAGVWRLVEAKSWPLGDAGVPEAAAEEHDVYEVATSLTAA 241
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +S +E+ + + ++ F R + + P LVAM LI A+ +
Sbjct: 242 QIRDSFGAPSSIPIWELPRFIDRL-QTAGFSARRHQVWLQTELAKPAFLVAMLLIGAAFT 300
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ R + ++ I F LY + + G++G + + AA P + I+ S+ +L
Sbjct: 301 MRHQRGGRTGLMALVAILLSFGLYFLRNFAQILGENGQIPVLLAAWAPPLAGIAASVALL 360
Query: 356 LQKEDG 361
L KEDG
Sbjct: 361 LHKEDG 366
>gi|126736392|ref|ZP_01752134.1| putative permease [Roseobacter sp. CCS2]
gi|126714213|gb|EBA11082.1| putative permease [Roseobacter sp. CCS2]
Length = 364
Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats.
Identities = 86/365 (23%), Positives = 155/365 (42%), Gaps = 9/365 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF +L++ L + +++ +DL + + G + + +L+ +P
Sbjct: 2 ILHRYFASRFLRSFLGVGMVFFLIMLFVDLVDQLRRFGSK-DATFVDLLMLSLLNIPQAF 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ I +F +L+R+SE+V++RA G S L + ++L+GIF V V+NPI
Sbjct: 61 YAILPLIMILATIALFLSLSRSSEMVVTRAAGRSALHSLLAPLTVALLVGIFAVGVMNPI 120
Query: 124 ATSGEKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
K + D+ W++ N I A+ + + D T +
Sbjct: 121 VAGTSKEFEARSDALRGDSSVLSFGSSGLWLRQGNATGQTVIRAQSANLDGTLLTDVTFL 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL------NIPIKMDG 236
T I R A A + L+ +Q + + S L + D
Sbjct: 181 TFAPDGNPITRISAASAELTTGAWVLRDAKSWQLAGVTTPEASAQLDAERTVQSTLTPDQ 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ +S +E+ + ++ F R F+ + +P+ LV+M LI AS +L
Sbjct: 241 IRDSFGTPSSIPIWELPAFIDRL-QTAGFSAQRHLVWFHTELALPIFLVSMVLIGASFTL 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + ++V + + F+ Y I + G++G L + AA P I +S+ LL
Sbjct: 300 RHQRGGRTGMMVMFAVLLAFVTYFIRNFAQVLGENGQLPVLLAAWAPPFAAIGISMGFLL 359
Query: 357 QKEDG 361
EDG
Sbjct: 360 HHEDG 364
>gi|217978371|ref|YP_002362518.1| permease YjgP/YjgQ family protein [Methylocella silvestris BL2]
gi|217503747|gb|ACK51156.1| permease YjgP/YjgQ family protein [Methylocella silvestris BL2]
Length = 361
Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats.
Identities = 94/362 (25%), Positives = 174/362 (48%), Gaps = 2/362 (0%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RYF +L L + +VFV+D E+ + +LP+ S A+LA R
Sbjct: 1 MIGWTLGRYFSARFLTLILAVFVTICGMVFVVDFVEMLRRTTDLPDASPRSVALLAMLRA 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P +Q++PF L ++ F +L R EL+I+RA+G+S+W L P + +I++GI +V++
Sbjct: 61 PSASEQLMPFCVLCGSMAAFLDLTRKLELLIARAVGVSVWGFLVPPIAIAIVIGIGSVML 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP++ + ++ + + +Q +D W++ + D I A+ + +
Sbjct: 121 FNPVSAAMKQRADKIEVEIFGRLTQQNADADIWIRQKSVDGDAIIKARTMSRDGSRLTKP 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T D +K +A+ A + + + ++ G I+ + L + +
Sbjct: 181 TVYIYDDHDKFEAEVEAEHAQLSDGVWRFEQARILMPGEETIETSVYLLASNLTPAQVAR 240
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S +F+++ ++++ + + + QF L+ PL+ VAM LIAA+ SL F
Sbjct: 241 GPISPQSVAFWDLDAARRQTDRAGL-DSTAYKLQFQSLLARPLLFVAMVLIAAAFSLRFF 299
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R +V G+ +GF+LY ++ G +G++ AA P ++ L L LL +E
Sbjct: 300 RFGGIEKMVGGGVAAGFVLYVATKLVGDLGGAGLVSAPVAAWSPAVIASMLGALALLNQE 359
Query: 360 DG 361
DG
Sbjct: 360 DG 361
>gi|146277167|ref|YP_001167326.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17025]
gi|145555408|gb|ABP70021.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17025]
Length = 364
Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats.
Identities = 77/365 (21%), Positives = 150/365 (41%), Gaps = 9/365 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + +L+ L L+ +ID+ + + + ++ + +L+ RVP I
Sbjct: 2 ILSRYIARRFLRMVFIVFLVFFGLMMLIDVLDQMRRFSD-EGITLVQAGLLSLLRVPATI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ + +F L RTSELV+ RA G S + L ++ ++ +G V V+NPI
Sbjct: 61 YTILPLIVILAAVALFLGLARTSELVVVRAAGRSGLRFLVAPMIVALAIGAAAVTVLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + S+ W++ + I A + + T
Sbjct: 121 VAGTSRQYDAAASRLARGEASILSISEEGLWLRQGGAEGQTVIHAARSNTDGTRLYAVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ-----YGRIPIDKNSTTLNIPIKMDG 236
+T D R A+ A + +L + + + + + +G
Sbjct: 181 LTFDGNGLPRSRVAAEQAALETGYWQLSGAKSWDLTLANPEASANLEGNIRVPSDLTREG 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
Q ++ +E+ ++ ++ F + + +P ML AM L+AA ++
Sbjct: 241 IQDSFGDPSAIPIWELPAYVAGLERAG-FSARKHRVWMQMELALPFMLAAMVLVAAGFTM 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
SR +V + SGF L+ + + G++G + + AA P ++ + S+ +LL
Sbjct: 300 RHSRFGGTGRMVLLALLSGFGLFFLRNFAQVLGENGQIPILLAAWSPPLIGVMGSLGLLL 359
Query: 357 QKEDG 361
EDG
Sbjct: 360 HLEDG 364
>gi|163759135|ref|ZP_02166221.1| putative permease [Hoeflea phototrophica DFL-43]
gi|162283539|gb|EDQ33824.1| putative permease [Hoeflea phototrophica DFL-43]
Length = 345
Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats.
Identities = 107/346 (30%), Positives = 181/346 (52%), Gaps = 2/346 (0%)
Query: 16 TTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVN 75
T L + L ++++ ++D NE ++ P Y+++ G +++A RVP I+Q IPF+ L+ +
Sbjct: 2 TFLTYCLAILVIILLVDFNESGRRLSAAPEYTVTTGLLVSALRVPTILQAAIPFVVLIAS 61
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
I LNR ELV++RA GIS WQ L P V ++L+G V +N A S + +I
Sbjct: 62 IATLLQLNRKYELVVARAAGISAWQFLAPLVAANLLIGFIAVAGLNTFAASAMQWAETII 121
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKD 195
+ ++ G Q SD PW++ Q D +GA+ T D+ I R +
Sbjct: 122 VE-RNLGSAQSSDSAPWLRQRTEQGDTVLGARASAAGGTRLSGATFFLFDEDQNIKERLE 180
Query: 196 ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKK 255
A+ A++ + + L V + S ++ +K + + + F+E+ K
Sbjct: 181 AETAVLGDGEWVLTNVRRIRGSEPVEQVESASVPTSLKAEFVGESLTSPDTVPFFELRDK 240
Query: 256 MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG 315
++ + KS E QF+ L+ P +L AMTLIAA VSL+F R Q ++ GI +G
Sbjct: 241 IAVA-KSFGLSATSYEMQFHRLVAQPALLAAMTLIAAIVSLKFVRFGQSLTVILGGILAG 299
Query: 316 FMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
F+LY + ++++F +G + P+ AA +PV++ +L +LL KEDG
Sbjct: 300 FVLYVVSELIQAFANAGTIPPIVAAWLPVLVASALGTTVLLHKEDG 345
>gi|330993928|ref|ZP_08317858.1| Lipopolysaccharide export system permease protein lptG
[Gluconacetobacter sp. SXCC-1]
gi|329758874|gb|EGG75388.1| Lipopolysaccharide export system permease protein lptG
[Gluconacetobacter sp. SXCC-1]
Length = 371
Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats.
Identities = 84/367 (22%), Positives = 166/367 (45%), Gaps = 10/367 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + + TL + L+ + D ++ ++ PN S + +A +P
Sbjct: 6 TLSLYIARQFTGATLAVIAFLTGLITMFDFIDLLRRVSTRPNVPTSLVSQIAFLHIPFAC 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+PF L+ I+ F+ L R+SELV++RA GIS WQ L V+ ++L+G ++P+
Sbjct: 66 LEILPFGVLLGGILCFWRLARSSELVVARAAGISAWQFLAGPVICAVLIGAMATTCVSPL 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQK---SDIIPWMQISN----PQQDIFIGAKKILPENHIW 176
++ + L +Q+ + + + S W++ + I A+++ +
Sbjct: 126 SSVMYRRAEALDRQYLRDNNGKSLNLSGGTLWLRQGDNGLVDHGVDIIHARQVRLNGGVL 185
Query: 177 E--DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
T + + ++ R +A + + L+ + +P D TL+ + +
Sbjct: 186 HIGGITIFRLGPDDGLLTRIEAQSGYLGGGRWILEGARMLRPDEMPSDMGRFTLHADLTL 245
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
G ++ + S + + + N+S F R F L+ +P++ M L+AA
Sbjct: 246 AGVEESFASPDTLSVWALPGFIRQLNRSG-FSTIRHRLHFQSLLTLPVLSGTMALVAAGF 304
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S+ +R +++ G+ +GF L+ + I FG++G L PV AA P + L++ +
Sbjct: 305 SMRPARRGGVIRMISSGVAAGFALFALSKIAAQFGETGTLPPVLAAWAPTGAGLCLAVTL 364
Query: 355 LLQKEDG 361
LL EDG
Sbjct: 365 LLHLEDG 371
>gi|110680307|ref|YP_683314.1| YjgP/YjgQ family permease [Roseobacter denitrificans OCh 114]
gi|109456423|gb|ABG32628.1| permease YjgP/YjgQ family, putative [Roseobacter denitrificans OCh
114]
Length = 365
Score = 312 bits (801), Expect = 5e-83, Method: Composition-based stats.
Identities = 88/366 (24%), Positives = 156/366 (42%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + + L + L+ ++DL + + + S + L P I
Sbjct: 2 ILHLYFARRFASWLLIAFIALSALIALVDLVDQTRRFADR-GVSATGIFELVILNTPQTI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QI+P I L+ + F +L R+SEL+ +RA G S L V ILLG +NPI
Sbjct: 61 SQILPLIVLLATVAFFLSLARSSELIATRASGRSAMGALVAPVSVVILLGTLATTTLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K +L Q ++ G S W++ + + I A + P+ + D T
Sbjct: 121 VAATSKKYNELSQIYRTGGVSTLSISTEGLWLRQATDDGQMVIRAWRSNPDASVLFDVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR------IPIDKNSTTLNIPIKMD 235
+ + + R AD A + + L+ V ++ R + S T+ + ++
Sbjct: 181 LAYEVIGTPVRRIHADSAELKDGAWLLRNVKDWPLARGINSEGNATEHRSLTIPSSLTVE 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
++ ++ S +E+ + N++ F + + + PL LVAM LIA++ +
Sbjct: 241 RIRESFGHPSTISIWEMTDFIKQLNQAG-FSSLQHRVWLQSELARPLFLVAMVLIASAFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + V + GF LY + + G++G L AA P I ++ L+ L
Sbjct: 300 MRHTRFGGTGVAVLAAVLLGFALYFVRSFGLILGENGQLPVYLAAWAPPIASVLLAFGPL 359
Query: 356 LQKEDG 361
L EDG
Sbjct: 360 LHAEDG 365
>gi|218679276|ref|ZP_03527173.1| permease YjgP/YjgQ family protein [Rhizobium etli CIAT 894]
Length = 312
Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats.
Identities = 123/312 (39%), Positives = 187/312 (59%), Gaps = 2/312 (0%)
Query: 51 GAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI 110
G ++ A R+PLI+QQ +PFI L V + V LNR ELV++RA GIS+WQ ++PF+ GS+
Sbjct: 2 GILMTAVRLPLILQQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMSPFIAGSL 61
Query: 111 LLGIFTVLVINPIATSGEKIGIDLIQQWKD-NGDKQKSDIIPWMQISNPQQDIFIGAKKI 169
LLGI T+ +NP+A G++ + + W+ N +K+ IPW++ + + D+ IGA +
Sbjct: 62 LLGILTMTALNPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAHTV 121
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
D I D ++I R+DA A + + +L VVE + G IP+ K S L
Sbjct: 122 QENGTKLIDAVLIHFDSSGQVILRQDAATAKLEDGYWQLNNVVERKPGEIPVRKASVQLR 181
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+K D Q+ + F+++ +++ + KS ETQF L+ PL+LVAMT
Sbjct: 182 TNLKQDFVQERLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTF 240
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
IAA+VSL+FSR NQ R ++ GI SGF+LY I ++K+FG SG++ P A IPV++ ++
Sbjct: 241 IAATVSLKFSRFNQSRSVILGGILSGFVLYVITVLVKAFGSSGVVPPFVATWIPVVVALA 300
Query: 350 LSILILLQKEDG 361
L ILL +EDG
Sbjct: 301 LGATILLHREDG 312
>gi|83942393|ref|ZP_00954854.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. EE-36]
gi|83846486|gb|EAP84362.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. EE-36]
Length = 365
Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats.
Identities = 79/366 (21%), Positives = 154/366 (42%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + ++ + L+ ++D+ + + + R + P +
Sbjct: 2 ILHLYFARRFIMGFILISAVLFSLLVLVDMVDQARRFSSY-DIGWLRLFGMTLLNTPETM 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ +V+F +L R+SELV++RA G S L + + ++G+ V ++NPI
Sbjct: 61 NLILPLIMILATVVLFLSLARSSELVVTRAAGRSALSALQAPIWVAFIIGVMAVGMLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K I L + G SD W++ + + I A + + + D T
Sbjct: 121 VAATAKRYIQLSDSIRAGGTSVLSVSDEGLWLRQGSDEGQTVIRAWRSNKDASVLYDVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG------RIPIDKNSTTLNIPIKMD 235
++ + R +AD A + N L + ++ TL + +D
Sbjct: 181 LSYAPEGGPARRIEADSAALENGIWTLTDAKSWPLEVGVNAEGAAETFDTLTLPSTLTLD 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + S Y++ + + F R + + P LVAM L+A++ +
Sbjct: 241 RIRDSITDPGAVSIYDLPDYIKQLELAG-FSPRRHKVWLQTELARPFFLVAMVLVASAFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + V + GF LY I + + G++G + + AA P + +I L++ +L
Sbjct: 300 MRHTRFGGTGVAVLASVLMGFGLYFIRSFAQILGENGQIPVLLAAWAPPVASILLALGLL 359
Query: 356 LQKEDG 361
L EDG
Sbjct: 360 LHSEDG 365
>gi|114704780|ref|ZP_01437688.1| hypothetical protein FP2506_07586 [Fulvimarina pelagi HTCC2506]
gi|114539565|gb|EAU42685.1| hypothetical protein FP2506_07586 [Fulvimarina pelagi HTCC2506]
Length = 360
Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats.
Identities = 101/358 (28%), Positives = 177/358 (49%), Gaps = 2/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYFF+ YL ++ LV +IDL E+ + L + S+ + +A RVP +
Sbjct: 5 TLNRYFFRLYLVNFFSTVVAVSALVLLIDLVELGRR-SVLADQSLGVLLLFSALRVPAFM 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+Q PFI L +I +LNR ELV++RA G+S WQ+L PF+ GS+ LG+ NP+
Sbjct: 64 EQAFPFIILFSSIFTLISLNRRLELVVARAAGVSAWQILMPFIAGSLFLGLLATFAYNPL 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++ + + PW++ + +GA ++ + + ++
Sbjct: 124 SAYTKAQAANIESAAEGREVASSALQTPWLRQNADGVRSIMGATQVAENGRVLSNVSAFV 183
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + R DA A + N + L + + G P D L ++ + ++
Sbjct: 184 MADDGSVETRIDAPRAELGNQEWILLRPRVTRIGYTPRDLVEYRLPTSLRPEYIEQRLAD 243
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S +E+ K+ + S F++ Q++ LI P + VAMTL+AA+V+ FSR+ Q
Sbjct: 244 PETISIWELGSKIDVAA-SLGFNSMAFSMQYHTLIAQPALFVAMTLLAATVATRFSRTGQ 302
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
P I G+ +GF+LY + + K+ G + ++ P+ AA PV+ + ILL +EDG
Sbjct: 303 PGRIFVGGVLAGFVLYVVTFLAKALGSNDVVPPIVAAWFPVLAAGLFGVTILLHQEDG 360
>gi|296116657|ref|ZP_06835267.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
23769]
gi|295976869|gb|EFG83637.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
23769]
Length = 371
Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats.
Identities = 92/367 (25%), Positives = 171/367 (46%), Gaps = 10/367 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + + L + L+ + D ++ ++ PN S + +A +P +
Sbjct: 6 TLSLYIARQFTYAVLAVIAFLTGLITLFDFIDLLRRVSSRPNVPASLVSEIAVLHIPFAM 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+PF L+ I+ F+ L R+SELV++RA GIS WQ L V ++L+G + VI+P+
Sbjct: 66 LEILPFGVLLGGIICFWRLARSSELVVARAAGISAWQFLAGPVGCALLIGALSTTVISPL 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQK---SDIIPWMQISN----PQQDIFIGAKKILPENHIW 176
+++ + L QQ+ + S WM+ S+ I A+++ +++
Sbjct: 126 SSAMYRRAEILDQQYLRESTVKTINMSGGALWMRQSDSGLVDHGVAIIHARRVRLRDNVM 185
Query: 177 E--DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ +D ++ ++ R +A + N + L+ P+D TL + +
Sbjct: 186 RISGISIFRLDGQDHMLARIEAGHGYLGNGRWVLEGARLLHPDENPVDMGHMTLRADLTL 245
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
G Q + S + + + N+S F + R +F L+ +P++ M L+AA
Sbjct: 246 AGVQDSLASPNTLSVWALPGFIKLLNRSG-FSSIRHRLRFQSLLTLPVLCGTMALVAAGF 304
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S+ +R +++ G+ +GF L+ I I FG+SG L PV AA P + L++ +
Sbjct: 305 SMRPARRGGVVRMISLGVGAGFALFAISKIAAQFGESGALPPVLAAWAPTGAGLCLAVSL 364
Query: 355 LLQKEDG 361
LL EDG
Sbjct: 365 LLHLEDG 371
>gi|300023218|ref|YP_003755829.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525039|gb|ADJ23508.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 364
Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats.
Identities = 95/360 (26%), Positives = 168/360 (46%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + ++ + L +L+F+ID E+ G+ + +A R+P I
Sbjct: 6 TLTRYIARMFIVAIVTTLTVCALLIFMIDFVELLRMAGKYGAVPGTTLLRIALLRLPAYI 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +I F LV +I LNR SEL + RA G+S+WQ L P + + +GIF + V NP+
Sbjct: 66 EFLIGFAVLVGSISALIYLNRKSELAVMRAGGMSVWQFLGPGLFVGLAVGIFAMAVFNPL 125
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A+ G L + N + W++ + + +GA +
Sbjct: 126 ASRGRATSEKLYAKAFGNEANLLRAQGGGSWIRQNGADGESVLGAAAASNQGLTLTGVLV 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D++ R DA A + + +L+ + G+ P S L+ + D Q
Sbjct: 186 FAYDREGHFSERIDAGSAELKDGYWELQDAWVTRLGQEPEKFKSYLLSTYLTPDRVQDAL 245
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S SF+++ + + ++K+ + R Q+ L+V P++ +AM L+AA+VSL RS
Sbjct: 246 GTVFSISFWDLPELIQAADKAKL-STERLRVQYQSLLVRPMLCLAMVLLAATVSLRSFRS 304
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ +VA G+ G + + I + G +G+ AA +PV+L +++S +LL +EDG
Sbjct: 305 GGIQTMVATGMIGGVGFFLLSEIARQIGIAGLAPAWVAAWMPVVLVLAISTTVLLHQEDG 364
>gi|254460215|ref|ZP_05073631.1| permease, YjgP/YjgQ family [Rhodobacterales bacterium HTCC2083]
gi|206676804|gb|EDZ41291.1| permease, YjgP/YjgQ family [Rhodobacteraceae bacterium HTCC2083]
Length = 365
Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats.
Identities = 89/366 (24%), Positives = 157/366 (42%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + + + L LL + + +IDL E + + + S S L P I
Sbjct: 2 ILHFYFARRFFRVFLTTLLIFLAFLTLIDLVEQMRRF-DSKDVSFSDIVFLTLFNAPGAI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QI+P + ++ + +F L RTSELV++R+ G S L + + ++GI TV + NPI
Sbjct: 61 YQILPLVMILSAVSLFLTLARTSELVVTRSAGRSALVTLASPMCVAAVIGITTVTLFNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKS--DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
S + I L Q++K S W++ + I A + D
Sbjct: 121 VASTTRQYITLEQEYKSQKKNTVSIGRDGLWLRQGDENGQTVIHALSTSDDMRTLFDARF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG------RIPIDKNSTTLNIPIKMD 235
+ + ++ R AD A + N +L + + + + L + ++
Sbjct: 181 LQYNTDSQPKTRIIADEARLTNTGWQLIRAKHWSLDTSGNPEETAREIDVLMLPTTLTIE 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + A+ S +E+ + ++ F R + PL L+AM L+ AS +
Sbjct: 241 NIRDSFSEPAAISIWEMDAYIEGLEEAG-FSTRRHKVWQQMEFARPLFLMAMVLVGASFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + + V I GF LY + + G++G L + AA P I +I L++ +L
Sbjct: 300 MRHTRFGKAGVAVLAAIMMGFGLYYVRNFAQILGENGQLPTMIAAWTPPIASILLALGLL 359
Query: 356 LQKEDG 361
L EDG
Sbjct: 360 LHMEDG 365
>gi|126462313|ref|YP_001043427.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17029]
gi|126103977|gb|ABN76655.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17029]
Length = 364
Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats.
Identities = 78/365 (21%), Positives = 150/365 (41%), Gaps = 9/365 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + +L+ L L+ +ID+ + + + ++ + +L+ RVP +
Sbjct: 2 ILSRYIARRFLRMVFIVFLAFFGLMMLIDVLDQMRRFSD-EGITLVQAGLLSLLRVPATL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ + +F L R+SELV+ RA G S + L +V ++ LG V V+NPI
Sbjct: 61 YTILPLIVILAAVALFLGLARSSELVVVRAAGRSGLRFLVAPMVVALALGTVAVTVLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + S W++ + I A + + T
Sbjct: 121 VAGTSRQYDAAAGRLARGEASILSISKEGLWLRQGGSGEQTVIHALRSNTDGTRLYAVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-PIDKNSTTLNIP----IKMDG 236
+T D + + R A+ A + +L + P + S N+ + +G
Sbjct: 181 LTFDAEGRPTGRIAAEQAALERGYWQLSGAKSWDLTEANPEARASLPGNLRVTSELTREG 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
Q ++ +E+ ++ ++ F + +P L AM L+AA ++
Sbjct: 241 IQDSFGDPSAIPIWELPAYVAGLERAG-FSARKHRVWMQMEFALPATLAAMVLVAAGFTM 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
SR +V + GF L+ + + G++G + + AA P ++ + S+ +LL
Sbjct: 300 RHSRFGGTGRMVLLALLGGFSLFFLRNFAQVLGENGQIPILLAAWSPPLIGVMGSLGLLL 359
Query: 357 QKEDG 361
EDG
Sbjct: 360 HLEDG 364
>gi|77463458|ref|YP_352962.1| putative permease [Rhodobacter sphaeroides 2.4.1]
gi|221639316|ref|YP_002525578.1| permease Yjgp/YjgQ family protein [Rhodobacter sphaeroides KD131]
gi|332558335|ref|ZP_08412657.1| Permease YjgP/YjgQ family protein precursor [Rhodobacter
sphaeroides WS8N]
gi|77387876|gb|ABA79061.1| putative permease [Rhodobacter sphaeroides 2.4.1]
gi|221160097|gb|ACM01077.1| Permease YjgP/YjgQ family protein precursor [Rhodobacter
sphaeroides KD131]
gi|332276047|gb|EGJ21362.1| Permease YjgP/YjgQ family protein precursor [Rhodobacter
sphaeroides WS8N]
Length = 364
Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats.
Identities = 75/365 (20%), Positives = 148/365 (40%), Gaps = 9/365 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + +L+ L L+ +ID+ + + + ++ + +L+ RVP +
Sbjct: 2 ILSRYIARRFLRMVFIVFLAFFGLMMLIDVLDQMRRFSD-EGITLVQAGLLSLLRVPATL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ + +F L R+SELV+ RA G S + L +V ++ LG V V+NPI
Sbjct: 61 YTILPLIVILAAVALFLGLARSSELVVVRAAGRSGLRFLVAPMVVALALGTVAVTVLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + S W++ + I A + + T
Sbjct: 121 VAGTSRQYDAAAGRLARGEASILSISKEGLWLRQGGSGEQTVIHALRSNTDGTRLYAVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKMDG 236
+T D + + R A+ A + +L + + + + + +G
Sbjct: 181 LTFDAEGRPTGRIAAEQAALERGYWQLSGAKSWDLTEANPEARAGLPGNLRVTSELTREG 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
Q ++ +E+ ++ ++ F + +P L AM L+AA ++
Sbjct: 241 IQDSFGDPSAIPIWELPAYVAGLERAG-FSARKHRVWMQMEFALPATLAAMVLVAAGFTM 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
SR +V + GF L+ + + G++G + + AA P ++ + S+ +LL
Sbjct: 300 RHSRFGGTGRMVLLALLGGFSLFFLRNFAQVLGENGQIPILLAAWSPPLIGVMGSLGLLL 359
Query: 357 QKEDG 361
EDG
Sbjct: 360 HLEDG 364
>gi|83953613|ref|ZP_00962334.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. NAS-14.1]
gi|83841558|gb|EAP80727.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. NAS-14.1]
Length = 365
Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats.
Identities = 78/366 (21%), Positives = 156/366 (42%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + ++ + L+ ++D+ + + + R + + P +
Sbjct: 2 ILHLYFARRFIMGFILISAVLFSLLVLVDMVDQARRFSSY-DIGWLRLFGMTLLKTPETM 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ +V+F +L R+SELV++RA G S L + + ++G+ V ++NPI
Sbjct: 61 NLILPLIMILATVVLFLSLARSSELVVTRAAGRSALSALQAPIWVAFIIGVMAVGMLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K I L + G SD W++ + + I A + + + D T
Sbjct: 121 VAATAKRYIQLSDSIRAGGTSVLSVSDEGLWLRQGSDEGQTVIRAWRSNKDASVLYDVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG------RIPIDKNSTTLNIPIKMD 235
++ ++ R +AD A + + L + ++ TL + +D
Sbjct: 181 LSYAPESGPARRIEADSAALEDGIWTLTDAKSWPLEVGVNAEGAAETFDTLTLPSTLTLD 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + S Y++ + + F R + + P LVAM L+A++ +
Sbjct: 241 RIRDSITDPGAVSIYDLPDYIKQLELAG-FSPRRHKVWLQTELARPFFLVAMVLVASAFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + V + GF LY I + + G++G + + AA P + +I L++ +L
Sbjct: 300 MRHTRFGGTGVAVLASVLMGFGLYFIRSFAQILGENGQIPVLLAAWAPPVASILLALGLL 359
Query: 356 LQKEDG 361
L EDG
Sbjct: 360 LHSEDG 365
>gi|188583149|ref|YP_001926594.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
gi|179346647|gb|ACB82059.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
Length = 362
Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats.
Identities = 87/358 (24%), Positives = 159/358 (44%), Gaps = 1/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF +++T L L LV+ +D E+ + G+ S A LA R P +
Sbjct: 6 TLGRYFAWRFVRTILGVFLTVFALVYTLDFVELLRRAGDSEGASTGLMAQLALYRTPAVA 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ ++PF L ++ L+R ELV++RA GIS WQ L P ++ +G + NP+
Sbjct: 66 ESVLPFAVLFGSMAALLQLSRKLELVVARAAGISAWQFLQPGAFVALAIGALAIGAYNPL 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++ ++ + K + W++ + I A+ + T
Sbjct: 126 SAALKQRSSEIEAKIFAKSTKAGTGKDLWLRQRSVDGQAIIRAETAVEGTTTLAGVTVFQ 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D + +A A +++ +L+ V P + + ++
Sbjct: 186 FDDAGVFTAQIEAARATLHDGWWELRDVRVLTRDEPPESHEVYLVASTLDPSQIRQRFTP 245
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S F+++ + ++ ++ + R Q+ L+ PL+ +AM L+AA+VSL F R
Sbjct: 246 PESVPFWQLPETIARHERAGL-DATRYRLQYDVLLATPLLYLAMVLVAATVSLRFFRFGG 304
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+V G+ +GF+LY +M+ G SG++ P AA P ++ L L LL +EDG
Sbjct: 305 VGKLVLGGVSAGFVLYVARQVMEGLGASGMVAPTVAAWFPAVVGSLLGTLTLLYQEDG 362
>gi|258542096|ref|YP_003187529.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
gi|256633174|dbj|BAH99149.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
gi|256636231|dbj|BAI02200.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
gi|256639286|dbj|BAI05248.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
gi|256642340|dbj|BAI08295.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
gi|256645395|dbj|BAI11343.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
gi|256648450|dbj|BAI14391.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
gi|256651503|dbj|BAI17437.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654494|dbj|BAI20421.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
Length = 370
Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats.
Identities = 87/366 (23%), Positives = 172/366 (46%), Gaps = 9/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + ++ + + + +V + D ++ ++ P+ S + +AA VP
Sbjct: 6 TLSRYIARQFVFSVVAMIASLTGIVCLFDFIDLLRRVATKPDVSTNVVTEIAALHVPYFA 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+PF L+ IV F+ L R+SEL+++RA GIS WQ L V ++L+G +I+P+
Sbjct: 66 TEILPFGMLLGGIVCFWRLTRSSELIVARAAGISAWQFLTAPVACAMLIGAVFTTLISPV 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIW- 176
++S + +L QQ+ G S + +P + A+ + ++ +
Sbjct: 126 SSSMYRRAEELDQQYLRTGGGPLSLSSGSLWLRQSDSQYDPHGVAMLHARGVQLKDGLLR 185
Query: 177 -EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + +D ++K++ R +A + K L + + L + ++
Sbjct: 186 IRNVSVFRLDHQDKLMMRIEAPEGYLGTLKWILSDASVVRPNDLLHHVGQIDLPTDLTVN 245
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + S + + +S ++S F + R F L+ +P++ M L+AA S
Sbjct: 246 RVQESFSSPETLSVWALPGFISLLDRSG-FSSIRHRIHFQSLLALPMLAGTMALVAAGFS 304
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ SR ++ G+ +GF+L+T+ + + FG SG L P+ AA P + + L++ +L
Sbjct: 305 MRPSRRGGVARMIGSGVAAGFLLFTVSKVAEQFGNSGALPPMLAAWAPTLAGLCLAVSLL 364
Query: 356 LQKEDG 361
L EDG
Sbjct: 365 LHLEDG 370
>gi|329114151|ref|ZP_08242913.1| Lipopolysaccharide export system permease protein LptG [Acetobacter
pomorum DM001]
gi|326696227|gb|EGE47906.1| Lipopolysaccharide export system permease protein LptG [Acetobacter
pomorum DM001]
Length = 370
Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats.
Identities = 87/366 (23%), Positives = 172/366 (46%), Gaps = 9/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + ++ + + + +V + D ++ ++ P+ S + +AA VP
Sbjct: 6 TLSRYIARQFVFSVVAMIASLTGIVCLFDFIDLLRRVATKPDVSTNVVTEIAALHVPYFA 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+PF L+ IV F+ L R+SEL+++RA GIS WQ L V ++L+G +I+P+
Sbjct: 66 TEILPFGMLLGGIVCFWRLTRSSELIVARAAGISAWQFLTAPVACAMLIGALFTTLISPV 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIW- 176
++S + +L QQ+ G S + +P + A+ + ++ +
Sbjct: 126 SSSMYRRAEELDQQYLRTGGGPLSLSSGSLWLRQSDSQYDPHGVAMLHARGVQLKDGLLR 185
Query: 177 -EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + +D ++K++ R +A + K L + + L + ++
Sbjct: 186 IRNVSVFRLDHQDKLMMRIEAPEGYLGTLKWILSDASVVRPNDLLHHVGQIDLPTDLTVN 245
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + S + + +S ++S F + R F L+ +P++ M L+AA S
Sbjct: 246 RVQESFSSPETLSVWALPGFISLLDRSG-FSSIRHRIHFQSLLALPMLAGTMALVAAGFS 304
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ SR ++ G+ +GF+L+T+ + + FG SG L P+ AA P + + L++ +L
Sbjct: 305 MRPSRRGGVARMIGSGVAAGFLLFTVSKVAEQFGNSGALPPMLAAWAPTLAGLCLAVSLL 364
Query: 356 LQKEDG 361
L EDG
Sbjct: 365 LHLEDG 370
>gi|260466947|ref|ZP_05813129.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
WSM2075]
gi|259029244|gb|EEW30538.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
WSM2075]
Length = 360
Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats.
Identities = 113/362 (31%), Positives = 193/362 (53%), Gaps = 3/362 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RYFF Y+ T++F LG + LVF+ID E+ + LP ++ ++ R+P
Sbjct: 1 MGWTLGRYFFFRYVAITIWFFLGLLALVFLIDFTELSGRTTGLPGFTYGTAMAISGLRMP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+I+ Q +PF+ L + +LNR ELVI+R+ G+S WQ L P +G++L G+ +V +I
Sbjct: 61 MIMLQTVPFVGLFSAMATLVSLNRRYELVIARSAGVSAWQFLLPCCIGALLFGVVSVGII 120
Query: 121 NPIATSGEKIGIDLIQQWKDN-GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP+A + + Q + + +D PW++ D IGA+ IL + D
Sbjct: 121 NPLAAHAFSLSEQIETQLRSGKSNTVSADAAPWIRQKTSSGDTIIGARAILNQGLEMSDA 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+D++ I RKDA A + + +L+ V ++ G I + + +K + Q+
Sbjct: 181 VFFILDQQGNIAERKDAVRAYLRDGYWELQDVKTFRNGVI-QSAANDRVPTNLKPEFVQE 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + FY++ K+ + +S QF L+ +P +LVAMTLIAA+VS+ F+
Sbjct: 240 RLARPETIPFYDLPGKIEVA-RSFGLKANAFAMQFDSLVALPFLLVAMTLIAATVSMRFA 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R Q ++ G+ +GF+LY + ++K+FG +G + AA +PV++ + + LL KE
Sbjct: 299 RMGQSATMILGGVVAGFLLYVVSVLVKAFGVAGFVPTAVAAWVPVVVAMFFGVTFLLYKE 358
Query: 360 DG 361
DG
Sbjct: 359 DG 360
>gi|162149096|ref|YP_001603557.1| hypothetical protein GDI_3326 [Gluconacetobacter diazotrophicus PAl
5]
gi|209545161|ref|YP_002277390.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787673|emb|CAP57269.1| putative membrane protein [Gluconacetobacter diazotrophicus PAl 5]
gi|209532838|gb|ACI52775.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 369
Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats.
Identities = 82/365 (22%), Positives = 165/365 (45%), Gaps = 8/365 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + + + +L LV + D ++ ++ P+ S + +A VP +
Sbjct: 6 TLSFYIARQFTLAVMAMILSLTGLVSLFDFIDLLRRVATRPDVPTSLASEIALLHVPYFM 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+PF L+ IV F+ L R+SEL+++RA GIS WQ L + ++L+GI ++P+
Sbjct: 66 IEILPFGVLLGGIVCFWRLTRSSELIVARAAGISAWQFLTGPLSCALLIGILATGALSPL 125
Query: 124 ATSGEKIGIDLIQQW-KDNGDKQKSDIIPWMQISN----PQQDIFIGAKKILPENHIWE- 177
++ + L + + G SD W++ ++ P + A+ + + +
Sbjct: 126 SSIMYRQAETLDHVYLRSGGPLNLSDGALWLRQADSGLVPHGVAILHARSVHLQGGVLRI 185
Query: 178 -DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ +D + +I R +A + + + R+P+ + + +
Sbjct: 186 GGISLFRLDDTDHLIVRIEAPEGYLGRKVWIFQDARTIRPDRLPVPAGRFVMPTDLTVPR 245
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
Q+ + S + + ++ +S F + R F L+ +P++ M L+AA S+
Sbjct: 246 VQESFASPDTLSVWALPGFIALLERSG-FSSIRHRLHFQTLLTLPILAGTMALVAAGFSM 304
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+R ++ G+ +GF L+TI + FG+SG + P+ AA P + L++ +LL
Sbjct: 305 RPTRRGGVARMIGSGVAAGFALFTISKVAAQFGESGAMPPLLAAWAPTGAGLCLAVSLLL 364
Query: 357 QKEDG 361
EDG
Sbjct: 365 HLEDG 369
>gi|254477617|ref|ZP_05091003.1| permease YjgP/YjgQ [Ruegeria sp. R11]
gi|214031860|gb|EEB72695.1| permease YjgP/YjgQ [Ruegeria sp. R11]
Length = 367
Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats.
Identities = 81/368 (22%), Positives = 150/368 (40%), Gaps = 12/368 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y+ + +L+ + LV +IDLNE + + + S + L P +
Sbjct: 2 TLDFYYARRFLQWFAVICAVLLTLVMLIDLNEQIRRF-DAQDLSFGQLFGLTLLNAPAAL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P I ++ IV+F L R+SELV++RAIG S + L VV + +G+ V +NPI
Sbjct: 61 SEFLPLIMILTTIVLFVGLARSSELVVTRAIGRSGIRALAAPVVLAAFIGLLAVSTLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPE--NHIWEDF 179
+ DL + +++ G + W++ Q I AK + +
Sbjct: 121 VAATSNHYRDLAETYRNGGPAALSLTGEGLWLRQGGAQGQSVIHAKGYSGDVEDVTLLGV 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPIK 233
T ++ + + I + A A + L + + S L+ +
Sbjct: 181 TILSYGPEGRPIRQTVARSATLDGSDWVLTNAKVWPLVTGVNPETNATEHASLRLSTTLT 240
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + S Y++ + ++ F R E + PL L+AM L+ A+
Sbjct: 241 SERIRDTLGTATGISVYDLPATIRELAEAG-FSTKRYEVWLQVELARPLFLIAMVLVGAA 299
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ +R + V + GF LY + + G++G + A P + I L++
Sbjct: 300 FTMRHARFGGTGLAVLMAVLLGFGLYFLRNFAQILGENGQIPVALAGWAPPVAAILLTMG 359
Query: 354 ILLQKEDG 361
+LL EDG
Sbjct: 360 LLLHAEDG 367
>gi|126725341|ref|ZP_01741183.1| putative permease [Rhodobacterales bacterium HTCC2150]
gi|126704545|gb|EBA03636.1| putative permease [Rhodobacterales bacterium HTCC2150]
Length = 365
Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats.
Identities = 81/366 (22%), Positives = 154/366 (42%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + ++ L L ++F+ID+ E + + A LA P +
Sbjct: 2 ILHLYFARKFITNFLMILFVFFGIIFLIDMVEQLRRFSSNS-VGMKEAAQLALLNAPGNL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ + +F NL RTSELVI+RA G S L ++ + LG+F V V NPI
Sbjct: 61 YRILPLLVILSTLALFLNLTRTSELVIARASGRSALGALLAPLLVTFTLGVFGVSVWNPI 120
Query: 124 ATSGEKIGIDLIQQ--WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + + + W++ N + I A + I + T
Sbjct: 121 GAATANLYETISDRHLGRASNALSIGAEGLWLRQGNVEGQTVIHANETNQNGTILGNVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI------PIDKNSTTLNIPIKMD 235
+ D +++I+R +A A + L + + ++ L +
Sbjct: 181 LAFDINSQVIYRIEAKTAKLETGGWVLNDTKRWDFKDTLNPELSASTTDTIRLQSNLTQK 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + F+E+ ++ + F + + + + +P L+AM LI A +
Sbjct: 241 EIQESFGAPSDIPFWELPAFIASLENAG-FSSTQHRVWYATELALPAFLMAMVLIGAMFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ SR + I++ I GF L+ + + G SG + + AA P + I L++ +
Sbjct: 300 MRHSRFGKTGIMLLGAIVMGFGLFFLKNFAQVLGNSGQIPVLLAAWTPPLAGILLALGFI 359
Query: 356 LQKEDG 361
L E+G
Sbjct: 360 LHTEEG 365
>gi|163853055|ref|YP_001641098.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
gi|218531865|ref|YP_002422681.1| permease YjgP/YjgQ family protein [Methylobacterium
chloromethanicum CM4]
gi|240140388|ref|YP_002964867.1| putative permease [Methylobacterium extorquens AM1]
gi|254562992|ref|YP_003070087.1| permease [Methylobacterium extorquens DM4]
gi|163664660|gb|ABY32027.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
gi|218524168|gb|ACK84753.1| permease YjgP/YjgQ family protein [Methylobacterium
chloromethanicum CM4]
gi|240010364|gb|ACS41590.1| putative permease [Methylobacterium extorquens AM1]
gi|254270270|emb|CAX26266.1| putative permease [Methylobacterium extorquens DM4]
Length = 362
Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 87/358 (24%), Positives = 160/358 (44%), Gaps = 1/358 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RYF +++T L L LV+ +D E+ + G+ S A LA R P +
Sbjct: 6 TLGRYFAWRFVRTILGVFLTVFALVYTLDFVELLRRAGDAEGASPGLMAQLALYRTPAVA 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ ++PF L ++ L+R ELV++RA GIS WQ L P ++ +G + NP+
Sbjct: 66 ESVLPFAVLFGSMAALLQLSRKLELVVARAAGISAWQFLQPGAFVALAIGALAIGAYNPL 125
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++ ++ + K + W++ + I A+ + T
Sbjct: 126 SAALKQRSSEIEAKIFAKSTKAGTGKDLWLRQRSIDGQAIIRAETAVEGTTTLAGVTVFQ 185
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D+ + +A A +++ +L+ V P + + ++
Sbjct: 186 FDEAGAFAAQLEAARATLHDGWWELRDVRVLTRDEPPESHEVYLVASTLDPSQIRQRFTP 245
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S F+++ + ++ ++ + R Q+ L+ PL+ +AM L+AA+VSL F R
Sbjct: 246 PESVPFWQLPETIARHERAGL-DATRYRLQYDVLLATPLLYLAMVLVAATVSLRFFRFGG 304
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+V G+ +GF+LY +M+ G SG++ P AA P ++ L L LL +EDG
Sbjct: 305 VGKLVLGGVSAGFVLYVARQVMEGLGASGMVAPTVAAWFPAVVGSLLGTLTLLYQEDG 362
>gi|126728788|ref|ZP_01744603.1| permease, YjgP/YjgQ family protein [Sagittula stellata E-37]
gi|126710718|gb|EBA09769.1| permease, YjgP/YjgQ family protein [Sagittula stellata E-37]
Length = 364
Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats.
Identities = 79/366 (21%), Positives = 155/366 (42%), Gaps = 11/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y+ + +L L + ++DL + Q+G+ S L ++P +
Sbjct: 2 TLHFYYARRFLSLFLGIFAVFALFQGLLDLIDELRQLGD--EVSFGETLQLVILKLPEGL 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ + +F L R+SELV +RA G S L ++L+G V ++NPI
Sbjct: 60 YEILPLVMILATVAMFIGLARSSELVATRAAGRSGLTALMAPATVALLIGAIIVAMMNPI 119
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKS--DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K DL + ++ S W++ I A + PE D +
Sbjct: 120 VAATSKRYADLRETYESGNTSAVSFGPEGLWLRQGGEDGQSVIRAARANPEATELYDVSI 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY--QYGRIPIDKN----STTLNIPIKMD 235
+T R A+ A + + L + G P L + +
Sbjct: 180 VTYAPDGGPAMRIQAESAALSDGAWHLTDAKAWPLTPGLNPELGARLHVEYELPSTLTRE 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + ++ + +++ + ++ +S F R + + PL LVAM L+ A+ +
Sbjct: 240 SIRDRFGRPSAVAIWDLPQFIAGLEESG-FSARRHIVWYNMELARPLFLVAMVLVGAAFT 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ +R + + V + GF LY + + + G++G L PV AA +P ++ L++ ++
Sbjct: 299 MQPTRLARTGLAVLSAVLLGFGLYYVRSFAQIMGENGQLAPVVAAWVPPTASVLLALGLV 358
Query: 356 LQKEDG 361
L EDG
Sbjct: 359 LHMEDG 364
>gi|163739705|ref|ZP_02147113.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
gi|163743162|ref|ZP_02150544.1| permease, YjgP/YjgQ family protein [Phaeobacter gallaeciensis 2.10]
gi|161383579|gb|EDQ07966.1| permease, YjgP/YjgQ family protein [Phaeobacter gallaeciensis 2.10]
gi|161386935|gb|EDQ11296.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
Length = 367
Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats.
Identities = 82/368 (22%), Positives = 154/368 (41%), Gaps = 12/368 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y+ + +L+ + LV +IDLNE + E + S+ + L P +
Sbjct: 2 TLDFYYARRFLQWFAVICGVLLTLVMLIDLNEQIRRF-EAQDLSLGQLFGLTLLNTPAAL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P I ++ IV+F L R+SELV++RAIG S + L V+ + L+G+ V +NPI
Sbjct: 61 SEFLPLIMILTTIVLFIGLARSSELVVTRAIGRSGIRALAAPVLLAALIGVLAVSTLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDF 179
+ DL + +++ G + W++ Q I A + D
Sbjct: 121 VAATSNRYRDLAETYRNGGPAALSLTGEGLWLRQGGAQGQSVIHATGYSGDTDDITLYDV 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPIK 233
T ++ + + I + A+ A + L K + ++ L+ +
Sbjct: 181 TILSYGPEGRPIRQTLAEEAALDGGDWVLIKAKVWPLIVGVNPETNAERHSTLRLSTTLT 240
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + S Y++ + +++ F R E + PL L+AM L+ A+
Sbjct: 241 SERIRDTLGTATGISVYDLPATIRELSEAG-FSTKRYEVWLQVELARPLFLIAMALVGAA 299
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ +R + V + GF LY + + G++G + A P + I L++
Sbjct: 300 FTMRHARFGGTGLAVLTAVLLGFGLYFLRNFAQILGENGQIPVALAGWAPPVAAILLTMG 359
Query: 354 ILLQKEDG 361
+LL EDG
Sbjct: 360 LLLHAEDG 367
>gi|114328862|ref|YP_746019.1| hypothetical protein GbCGDNIH1_2198 [Granulibacter bethesdensis
CGDNIH1]
gi|114317036|gb|ABI63096.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
CGDNIH1]
Length = 370
Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats.
Identities = 91/366 (24%), Positives = 172/366 (46%), Gaps = 9/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + +L L L+ +LV + D E+ + P+ S + +AA R+P +
Sbjct: 6 TLSSYITRVFLAAALVVLVALTLLVGLFDFIELLRRAATKPDVSFGLVSTIAALRLPWMS 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+PF L+ I F+ L R+SELV++RA GIS WQ L V + LLG+ + VI+P+
Sbjct: 66 ITILPFAVLLGGIGAFWRLTRSSELVVARAAGISAWQFLALPVGAAALLGMLAMTVISPL 125
Query: 124 ATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQ----QDIFIGAKKILPENHIWE 177
++ L + G + + W++ S+P I A ++ + +
Sbjct: 126 SSVMLSRAEQLDNTYLRTSGGPMRLAGGQLWLRQSDPGLDPHGVSIIHAMQVAAHKNSLQ 185
Query: 178 --DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
T +D +++++ R +A A + + + L + +P ++ + + +
Sbjct: 186 ASSITVFRLDSEDRLVQRIEAATARLVSGQWVLDNARVLRPSHLPDPPHTVEIPTDLTVR 245
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + SF+ + + ++S F + R +F L+ +PL+ M L+AA S
Sbjct: 246 RIQESFASPDTLSFWSLPDFIRLLDRSG-FSSLRHRLRFQSLLALPLLCATMALVAAGFS 304
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ SR ++ G+ +GF L+ + + + FG+SG + V AA P + + L++ +L
Sbjct: 305 MRPSRRGGVAKMIGSGVAAGFCLFVVSKVAEEFGQSGTVPVVLAAWAPSVAGLMLAVALL 364
Query: 356 LQKEDG 361
L EDG
Sbjct: 365 LHLEDG 370
>gi|99080789|ref|YP_612943.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
gi|99037069|gb|ABF63681.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
Length = 368
Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats.
Identities = 86/369 (23%), Positives = 153/369 (41%), Gaps = 13/369 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y+ + +L+ + M LV +IDL+E + + + + L P
Sbjct: 2 ILDLYYARRFLQWFMVIAAVLMSLVMLIDLSEQFRRF-DAQDLRFGQLLELTLLNAPAAF 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P I ++ IV+F + R+SELV++RAIG S + L P VV +++LG V +NPI
Sbjct: 61 SEFLPLIMILTTIVLFVGMARSSELVVTRAIGRSGIRALVPPVVVALVLGGLAVSTLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK---QKSDIIPWMQISNPQQDIFIGAKKI--LPENHIWED 178
+ L + ++ G S W++ I A EN D
Sbjct: 121 VAATTNRFETLSESYRQTGGPAAVSLSGEGLWLRQGGQNGQSVIHAANYRGDAENLYLYD 180
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPI 232
+ +T R A A + D L+ +Q R + L +
Sbjct: 181 VSILTYAPDGGPTRRTVAAEARLEGDDWVLRDAKVWQLILGVNPERSAKRYDELRLPTTL 240
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + S Y++ + + +++ F R + + PL LVAM L+ A
Sbjct: 241 TNERIRDTLGYAEGISIYDLPQTIQSLSEAG-FSTTRFQVWLQVELARPLFLVAMVLVGA 299
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ ++ +R + V + GF LY + + G++G + + AA P + +I L++
Sbjct: 300 AFTMRHTRLGGTGVAVLTSVLLGFALYFVHNFARILGENGQIPILLAAWAPPVASILLTM 359
Query: 353 LILLQKEDG 361
+LL EDG
Sbjct: 360 GLLLHAEDG 368
>gi|149914657|ref|ZP_01903187.1| permease, YjgP/YjgQ family protein [Roseobacter sp. AzwK-3b]
gi|149811450|gb|EDM71285.1| permease, YjgP/YjgQ family protein [Roseobacter sp. AzwK-3b]
Length = 363
Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats.
Identities = 80/366 (21%), Positives = 154/366 (42%), Gaps = 12/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + +L T L +IL+F+ID+ +M + P + S +A + P
Sbjct: 2 TLHLYLARRFLLTFLAIFSVFVILLFLIDIV---KEMQDFPAFPFSEILEIALLKAPSAN 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P I ++ + +F ++R SELV+ RA G S + L +V + L+G+ +V ++NPI
Sbjct: 59 YEILPLIVILATVALFLRMSRNSELVVVRASGRSAIRALVAPLVVAGLIGVVSVTMLNPI 118
Query: 124 ATSGEKIGIDLIQQWK--DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K DL+ + + W++ + I A++ + + T
Sbjct: 119 VAASAKRHNDLMNSYLGWSINIMAIAPEGLWLRQGSETGQTVIHAERASSDVSTLYNTTF 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPIKMD 235
I R A A + + + +L + + +S ++ + D
Sbjct: 179 IAFGLDGTPQRRITAASATLGDGEWRLADAKLWDLSSGINPESTAQELDSYSVPSALTQD 238
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ S +++ K + +S F R + PL L+A+ + AA+ +
Sbjct: 239 RIIDSFGKPEYISIWDLPKFIGQLEESG-FSARRYAVWMQTELARPLFLIALVMAAAAFT 297
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ SR + + V I GF L+ I + G++G + + AA P + L++ IL
Sbjct: 298 MRHSRLHNTGVSVLTAIMLGFGLHYIRNFAQILGENGQIPIMLAAWAPPVAAFLLALGIL 357
Query: 356 LQKEDG 361
L E+G
Sbjct: 358 LHMEEG 363
>gi|84500988|ref|ZP_00999223.1| permease, YjgP/YjgQ family protein [Oceanicola batsensis HTCC2597]
gi|84391055|gb|EAQ03473.1| permease, YjgP/YjgQ family protein [Oceanicola batsensis HTCC2597]
Length = 365
Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats.
Identities = 85/366 (23%), Positives = 157/366 (42%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L YF +L+ + L +++ +ID+ E ++ P ++S+ L P I
Sbjct: 2 TLHYYFAWRFLRIFIGLLAVFLLMSMLIDVAEHLRRLSSTP-ATLSQVLRLVLLNAPEGI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ + +F L RTSELV++RA G S + L V+ + +G+ V ++NPI
Sbjct: 61 YTILPLIMILATVALFLGLARTSELVVTRAAGRSALRSLVSPVIVAFAIGVIGVAMVNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNG--DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K L++ ++ G S W++ + I A + P+ D T
Sbjct: 121 VAATSKRYAALLESYQSGGADVLSLSAEGLWLRQGGAEGQTVIRAARSNPQATELYDVTM 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST----TLNIPIKMD-- 235
I R +A A + +L + R + T + +P +
Sbjct: 181 IAYAPDGGPEKRIEAARARLIAGAWELHDARIWPLARGTNPEARTERRESFEVPSSLTEA 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + ++ +++ + ++ F R F + PL LVAM LIAA+ +
Sbjct: 241 RIRDTFGEPSAIPVWDMPTYIGLLTEAG-FSARRHAVWFQMELAKPLFLVAMVLIAAAFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ R + I V I GF LY + ++ G++G + AA P + ++ L++ +L
Sbjct: 300 MRHVRFGKTGIAVLSAIMLGFALYYVRNFVQILGENGQIPVALAAWAPPVASVLLALGLL 359
Query: 356 LQKEDG 361
L EDG
Sbjct: 360 LHMEDG 365
>gi|296445732|ref|ZP_06887685.1| permease YjgP/YjgQ family protein [Methylosinus trichosporium OB3b]
gi|296256712|gb|EFH03786.1| permease YjgP/YjgQ family protein [Methylosinus trichosporium OB3b]
Length = 361
Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats.
Identities = 87/362 (24%), Positives = 155/362 (42%), Gaps = 2/362 (0%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L RY + KT L L+FV+ E+ + G++P A++ RV
Sbjct: 1 MIGLTLSRYLAARFAKTILAIFATMFCLMFVVYFVELLRRAGDIPQAGADTVALMTILRV 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + I+PF L + F +L R ELV++RA G+S+WQ L P ++++G+ +V +
Sbjct: 61 PATAETILPFAVLFGAMTTFVDLTRKLELVVARASGVSVWQFLFPPAFVALVIGVVSVTL 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
NP++ ++ + + + D W++++ + A +
Sbjct: 121 YNPVSAVMKQRSDQMELELFGVQGSVRVDHSKWLRLTGVDGTAILHATDYQAGGARLTEV 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ K+ + R +A A + L++ G S L + +
Sbjct: 181 SVNVYSKEGLFLERVEAARARLLAGVFVLEEARVNAPGEESRTVGSYLLATDLTPEQLVT 240
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+ +++ + QF L+ PL+LVAM L+AAS SL F
Sbjct: 241 ATTPPQGAPFWSLLE-LGEKTADAGLDPTGYILQFQTLLARPLLLVAMVLVAASFSLRFF 299
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R V+ G+ +GF+LY + + G +G++ P+ AA P ++ L + LL E
Sbjct: 300 RMGGIARTVSGGVVAGFVLYIVTKLFSDLGGAGVISPLVAAWSPALVGSMLGAVSLLYSE 359
Query: 360 DG 361
DG
Sbjct: 360 DG 361
>gi|254510403|ref|ZP_05122470.1| permease, YjgP/YjgQ family [Rhodobacteraceae bacterium KLH11]
gi|221534114|gb|EEE37102.1| permease, YjgP/YjgQ family [Rhodobacteraceae bacterium KLH11]
Length = 382
Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats.
Identities = 91/367 (24%), Positives = 159/367 (43%), Gaps = 11/367 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + ++++ L + L+ +IDL E + + + S + L P I
Sbjct: 18 ILDRYFARRFVQSFLVIGGIFLTLMILIDLIEQVRRFDSV-DLSFGQLLQLTLLNTPAAI 76
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P + ++ I +F L R+SELV++RAIG S + L V ++++G F V ++NPI
Sbjct: 77 SEMLPLLMILATIALFVGLARSSELVVTRAIGRSGIRALLAPVFIALMIGGFAVALLNPI 136
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGA-KKILPENHIWEDFT 180
A + + L +++ G S W++ ++ I A + ++ D T
Sbjct: 137 AAATSEEFQRLADGYRNQGSSALSISGEGLWLRQASASGQSVIHATGTVNGDDFALHDVT 196
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT------LNIPIKM 234
T K + A A + N L++ + + + T L +
Sbjct: 197 ITTFSSDGKPNQQIAARQADLENGYWTLRQAKVWTLEDDLNPETNATTHEVLNLPTTLTR 256
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D Q S S Y++ + +S ++ F + E + PL LV+M LI A+
Sbjct: 257 DRILDTLGQQDSVSVYDLPQLISDLREAG-FATKQYEVWLQVQLARPLFLVSMVLIGAAF 315
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ R I V + GF +Y I + G++G L AA P I LS+ +
Sbjct: 316 TMRHVRFGGTGIAVLTAVLLGFGIYFIRNFAQILGENGQLPIFVAAWAPPFAGILLSLGL 375
Query: 355 LLQKEDG 361
LL EDG
Sbjct: 376 LLHAEDG 382
>gi|315122194|ref|YP_004062683.1| putative permease protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495596|gb|ADR52195.1| putative permease protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 321
Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats.
Identities = 216/322 (67%), Positives = 270/322 (83%), Gaps = 1/322 (0%)
Query: 40 MGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW 99
M ELP YS SRGA+L+ TR+PLIIQQ IPFI+L+V+++VFFNLNRT+ELVI+RA+G+SIW
Sbjct: 1 MSELPGYSTSRGAMLSVTRLPLIIQQTIPFISLIVSMIVFFNLNRTNELVITRAVGVSIW 60
Query: 100 QLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ 159
QLL+PF GS LLG+FT+LVINP+A SGEK+GI ++ W+ D++ +IIPW+ I N +
Sbjct: 61 QLLSPFTTGSFLLGMFTILVINPMAVSGEKMGISMVNNWR-THDQKTLEIIPWIHIENKK 119
Query: 160 QDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI 219
+D FIGAKKILPE +I EDFT IT++K+N I R+DA AI+ + + LK+VVEY+YG +
Sbjct: 120 EDFFIGAKKILPEKNILEDFTFITVNKENDTIFRQDAHFAIVQKNNIYLKEVVEYKYGAL 179
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
P+ KNST LNI IKM+ FQKF+EQF S SFYEIIKK+ FS++S++F NY +ETQFYF+I
Sbjct: 180 PVFKNSTILNIAIKMNYFQKFTEQFTSHSFYEIIKKVIFSHQSSVFRNYFSETQFYFMIS 239
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
IP MLVAMTLIAA+VSLEF+RSNQPRIIV YG+ +GFMLYTIIT+MKSFGKSGILLP AA
Sbjct: 240 IPFMLVAMTLIAAAVSLEFNRSNQPRIIVTYGVCAGFMLYTIITLMKSFGKSGILLPFAA 299
Query: 340 ALIPVILTISLSILILLQKEDG 361
ALIP+I I LSI ILL+KEDG
Sbjct: 300 ALIPIISIICLSIFILLKKEDG 321
>gi|114766152|ref|ZP_01445156.1| permease, YjgP/YjgQ family protein [Pelagibaca bermudensis
HTCC2601]
gi|114541612|gb|EAU44654.1| permease, YjgP/YjgQ family protein [Roseovarius sp. HTCC2601]
Length = 364
Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats.
Identities = 82/366 (22%), Positives = 165/366 (45%), Gaps = 11/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + +L L L + + ++DL + + G + S + L +P +
Sbjct: 2 ILHRYFARRFLTMFLSILTVFALFLALLDLVDQLRRFG--SDVSFGQVVYLTLLNLPSGL 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ +F + R+SELV+ RA G S L V ++++ +V ++NPI
Sbjct: 60 YEILPLVMILATAALFLMMARSSELVVVRAAGRSGLTALAGPVAVALVISGVSVAILNPI 119
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKS--DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + DL + +K NG S W++ + D I A + P+ + + +
Sbjct: 120 VAATSRQSSDLTESYKSNGASTISIGREGLWLRQGGDEGDTVIRAARANPDATVLYEVSF 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY------QYGRIPIDKNSTTLNIPIKMD 235
+ + ++ + R +A+ A + + L+ + + L + D
Sbjct: 180 VEYEAESGPLRRIEAEEAALQDGAWVLRDAKAWPLQSGRSPEGMSERFERLELPSDLTQD 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
G + + +S + +++ + + + F R + P+ LVAM L+AA +
Sbjct: 240 GIRDRFGKPSSVAIWDLPEFIEGLEMAG-FSARRHVVWLQMELARPVFLVAMVLVAAGFT 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + + V + GF LY + + G++G L P+ AA IP I ++ L++ ++
Sbjct: 299 MRPARLGRTGLHVLAAVLLGFGLYYVRNFAQIMGENGQLPPILAAWIPPIASLLLALGLV 358
Query: 356 LQKEDG 361
LQ EDG
Sbjct: 359 LQMEDG 364
>gi|170746989|ref|YP_001753249.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
JCM 2831]
gi|170653511|gb|ACB22566.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
JCM 2831]
Length = 363
Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats.
Identities = 89/359 (24%), Positives = 161/359 (44%), Gaps = 1/359 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RYF +L+T L + LV+ +D E+ + GE S A L+ R P +
Sbjct: 6 PTLGRYFAARFLRTVLGVFVTVFALVYTLDFVELLRRAGEAQGASAGLMAQLSLYRTPAV 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++PF L ++ L+R ELV++RA GIS WQ L P + ++ LG V V NP
Sbjct: 66 AEGVLPFAVLFGSMAALLQLSRKLELVVARAAGISAWQFLQPGLFVALALGALAVGVYNP 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
++ ++ ++ + K S W++ + + A+ + +
Sbjct: 126 VSAMLKQRSTEIEAKIFAKSTKASSGKDLWIRQKGLDGEAILRAETAVEGTTTLAGVSVF 185
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
T D K + A A++++ +L V P ++ + + ++
Sbjct: 186 TFDAAGKFAEQLVAARAMLHDGYWELSDVRVLTPDAPPESFDTYLIASNLDPGQVRQRFT 245
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S F+++ ++ + ++ + R Q+ L P++ VAM ++AA+VSL F R
Sbjct: 246 PPESVPFWQLPTTIARTERAGL-DATRYRLQYDVLWARPVLFVAMVIVAATVSLRFFRFG 304
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+V G+ +GF LY + +M+ G SG++ AA P ++ L L LL +EDG
Sbjct: 305 GVGKLVLGGVAAGFALYVVRQVMEGLGASGLVAAPVAAWFPAVVGSLLGTLTLLYQEDG 363
>gi|154253776|ref|YP_001414600.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
DS-1]
gi|154157726|gb|ABS64943.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
DS-1]
Length = 363
Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats.
Identities = 90/360 (25%), Positives = 162/360 (45%), Gaps = 4/360 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + +L L ++L+F+I+L E+ + + P+ + +A VP I
Sbjct: 6 TLSRYLGRQFLGVVLLTFGVFIVLIFMIELVELLRRSADKPDVTFGLVVTIALMEVPRIG 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q +PF L + F L+R +ELV++RA G+S+WQ + P + + ++G F V NP+
Sbjct: 66 AQTLPFAVLFGGMAAFLRLSRNNELVVARAAGVSVWQFIAPALAVAFVIGAFVTTVFNPV 125
Query: 124 ATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + L ++ + S W++ ++ + A + + + T
Sbjct: 126 SATLTTRAEQLESKYLSRQASFVAVSANGLWLRQADSTGQSVVHALR-MDDGFRLRRVTI 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D+ N+ R DA A + +L V G ++ + ++
Sbjct: 185 FLYDQGNRFSGRIDAATARLRPGYWELADVWVMMDGEQSRKYDTYRQETSLTQKQIEESF 244
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S SF+E+ ++ + + F R + F+ L+ P +L M LIAA+ SL +R
Sbjct: 245 AREESISFWELPHFIATAE-AAGFSARRYQIYFHQLLATPALLCTMVLIAAAFSLRVTRM 303
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+V GIFSGF++Y + + + G SGIL AA P ++ L + +L EDG
Sbjct: 304 GGLLQMVLGGIFSGFLIYFLGNLAIALGLSGILPAALAAWAPSLVATLLGLAVLFHLEDG 363
>gi|310816138|ref|YP_003964102.1| putative permease [Ketogulonicigenium vulgare Y25]
gi|308754873|gb|ADO42802.1| putative permease [Ketogulonicigenium vulgare Y25]
Length = 360
Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats.
Identities = 89/365 (24%), Positives = 153/365 (41%), Gaps = 13/365 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF Y K L G +++ +I+L E + G ++ L VP +
Sbjct: 2 ILHRYFALRYFKAFLGTAAGFFLMLVMIELIEQLRRFGGQSDFPA-----LTLLNVPATL 56
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q++P I ++ +V+F L R+SE+V++RA G S L V+ +L+G+ V+ NPI
Sbjct: 57 YQVLPLIVIISALVLFLGLARSSEMVVTRAAGRSALIALIAPVLIVMLMGLLAVMAFNPI 116
Query: 124 ATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
S + + I + Q W++ + I A P+ T +
Sbjct: 117 VASTSREYDNRIATITGSSRILQIGGDAIWLRQGDEDGQSVIRAAASDPDGTTLRGVTML 176
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL------NIPIKMDG 236
+ R DA A + D +++ + + S T+ + D
Sbjct: 177 SYTNDGIPARRIDAAAATLSGDHWQMQNAKVWPLNTGQNPEASATIHATLAVPSNLSPDE 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ AS S +E+ + + F R + +P LVAM LIAA +L
Sbjct: 237 IRNSFGNPASISVWELPAFIKRMEDAG-FTAQRQIVHLQSELALPAFLVAMMLIAAVFTL 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + ++V + + F LY I + + G++G L P+ AA + + I+L + +LL
Sbjct: 296 RHQRGGRTGMMVLFAVLISFSLYFIRNLAQILGENGQLTPLLAAWVTPLAAIALGVGLLL 355
Query: 357 QKEDG 361
EDG
Sbjct: 356 HLEDG 360
>gi|110634109|ref|YP_674317.1| permease YjgP/YjgQ [Mesorhizobium sp. BNC1]
gi|110285093|gb|ABG63152.1| permease YjgP/YjgQ [Chelativorans sp. BNC1]
Length = 359
Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats.
Identities = 113/359 (31%), Positives = 175/359 (48%), Gaps = 3/359 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RYFF+ Y T + +G LV+++ EI + G+L ++ S LAA ++P+I
Sbjct: 4 PTLGRYFFRRYAVITAWNFIGVAALVYIVTFTEITGRAGDLEGFTTSWALGLAALQLPII 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+QQ +PFI LV I +LNR ELVI+RA GIS WQ L P G+ + G+ TVLV+NP
Sbjct: 64 MQQAVPFIGLVAAIATLISLNRKYELVIARAAGISAWQFLTPIAFGAFVFGLLTVLVLNP 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA L + D + W++ Q + IGA L
Sbjct: 124 IAARAFASAQMLEATVR-GADTSNNAKERWIKQRTDQGETIIGADAALAGGTELVRPVFF 182
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
I +I R DA A + + +L VV Q G P + + +K + +
Sbjct: 183 IIGDD-RIAERLDAASAFLRDGYWELVDVVRRQGGNAPEKIATARVPTNLKPEFVGQELT 241
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ S + + + + S Q + LI +P +LVAMTLIAA+VS+ F+R
Sbjct: 242 DPDAVSIFALPGMIETA-HSFGLRANAFAMQLHSLITLPPLLVAMTLIAATVSMRFTRMG 300
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
Q ++ G+ +GF+LY ++++FG +G + P AA PV++ + + LL +EDG
Sbjct: 301 QSATVILGGVVAGFLLYVSSVLVRAFGDAGFVPPPIAAWTPVMVAMFFGVTFLLFREDG 359
>gi|328544012|ref|YP_004304121.1| permease YjgP/YjgQ [polymorphum gilvum SL003B-26A1]
gi|326413756|gb|ADZ70819.1| Permease YjgP/YjgQ [Polymorphum gilvum SL003B-26A1]
Length = 363
Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats.
Identities = 101/361 (27%), Positives = 186/361 (51%), Gaps = 3/361 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L YF + +LK L L A +L+F+ D+ E+ + GE ++S+ R +++ RVPL+
Sbjct: 4 PTLTLYFSRRFLKAILGLFLLAAVLIFLFDVLELLRRAGERGDFSVLRITLISLLRVPLL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++Q++PF L I F L+R ELV++RA GIS+WQ P V+ ++++G+ +V + NP
Sbjct: 64 LEQVLPFAVLFGAIWAFVTLSRALELVVARAAGISVWQFGAPAVLVALIIGLVSVTLYNP 123
Query: 123 IATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A ++ ++ + ++ W++ + + A+++L T
Sbjct: 124 MAVWMQERSNEVAAGIFGTEETFLLQTTNAVWIRQDGLDGESVLNAEQLLDHGERLLGVT 183
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
T D+ R +A A + N LK V+ Y P + ++ + ++
Sbjct: 184 IFTFDRAGSFQERIEAREARLRNQFWHLKDVIVYTTESDPQRYGTYEVSTYLTPTEVRES 243
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S SF+ + + + ++++ + YR Q++ L+ PL+L+AM LIAA+VSL SR
Sbjct: 244 IGAPESISFWNLPRFIELASRAGL-PAYRYTLQYHSLLARPLLLLAMVLIAAAVSLRVSR 302
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
++ GI +GF+LY + + + FG +GI+ P+ AA P + + + ILL +ED
Sbjct: 303 FGGLGGMILGGIIAGFVLYVLSELGRDFGGAGIVPPLVAAWAPGAFGVLMGLTILLNRED 362
Query: 361 G 361
G
Sbjct: 363 G 363
>gi|126739400|ref|ZP_01755093.1| permease, YjgP/YjgQ family protein [Roseobacter sp. SK209-2-6]
gi|126719500|gb|EBA16209.1| permease, YjgP/YjgQ family protein [Roseobacter sp. SK209-2-6]
Length = 367
Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats.
Identities = 81/367 (22%), Positives = 149/367 (40%), Gaps = 12/367 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y+ + + + L M LV +IDL+E + + S + L P +
Sbjct: 3 LDLYYARRFAQWFLVITGVLMTLVVLIDLSEQIRRFDAF-DLSAGQILGLTLLNAPAAMN 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ +P I ++ IV+F L R+SELV++RAIG S + L V+ + L+G+ V +NPI
Sbjct: 62 EFLPLIMILTTIVLFVGLARSSELVVTRAIGRSGIRALAAPVLVAALIGVLAVSTLNPIV 121
Query: 125 TSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDFT 180
+ L ++ G + W++ +P + A I D T
Sbjct: 122 AATTNRYKSLSDSYRTGGPSVLSLTGEGLWLRQGSPSGQSVVHAAGYGGGREEIILYDVT 181
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR------IPIDKNSTTLNIPIKM 234
+T K + R A A + L+ + + + +
Sbjct: 182 ILTYGKDSGPRTRTQARSARLEGSDWVLQDAKVWPLSAWTNPEISAGEHQELRIPTTLTQ 241
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D + + S Y++ + + ++ F + E + + P L+AM L+ A+
Sbjct: 242 DRIRDRLDASDGISIYDLPQTIRELAEAG-FATKKHEVWYQVELARPFFLIAMVLVGAAF 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ +R + V + GF LY I + G++G + AA P + +I L++ +
Sbjct: 301 TMRHTRFGGTGMAVLTAVLLGFGLYFIRNFAQILGENGEIPVALAAWAPPVASILLTLGL 360
Query: 355 LLQKEDG 361
LL EDG
Sbjct: 361 LLHAEDG 367
>gi|149201834|ref|ZP_01878808.1| permease, YjgP/YjgQ family protein [Roseovarius sp. TM1035]
gi|149144882|gb|EDM32911.1| permease, YjgP/YjgQ family protein [Roseovarius sp. TM1035]
Length = 378
Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats.
Identities = 71/366 (19%), Positives = 151/366 (41%), Gaps = 12/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + + + + + ++++ +IDL + G+ P + + + ++P
Sbjct: 17 ILERYFGRRFFVSFMGVTITMLVIMGLIDLMDEL---GDFPELAFGQVLGIVLLKLPEAY 73
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IIP + ++ ++ +F L R+SE+V+ RA G S + L ++ +G+ + V NP+
Sbjct: 74 YEIIPLVMILASVALFLRLARSSEMVVLRASGRSALRGLLAPAAVALAIGLLGLAVGNPL 133
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K DL+ + D + W++ I A + + +
Sbjct: 134 VAATAKRHHDLVNTYSGQTYSDLAIASEGLWLRQGGTAGQTVIYAARSSSDLSTLYGPSF 193
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR----IPIDKNSTTLNIPIKMDGF 237
+ + R A A + L+ + + + L++P +
Sbjct: 194 YDFAPDGQPLRRISASTARLETGAWLLEDAKIWDLAENINPEAMARQEAQLSVPSDLTQD 253
Query: 238 Q--KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +E+ K + ++ F R F + P+ LVA+ LI+A+++
Sbjct: 254 RILDSFGSPEYIPIWELPKFIDQLEEAG-FSARRYAIWFQSELAQPVFLVALVLISAALT 312
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + V + GF L+ + G++G L + AA P + ++ + + IL
Sbjct: 313 MGHTRGANVGLSVLTAVLLGFGLHYVRNFAHILGENGQLPILLAAWAPPVASLFIGLGIL 372
Query: 356 LQKEDG 361
L EDG
Sbjct: 373 LHLEDG 378
>gi|312113657|ref|YP_004011253.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
17100]
gi|311218786|gb|ADP70154.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
17100]
Length = 363
Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats.
Identities = 85/363 (23%), Positives = 163/363 (44%), Gaps = 4/363 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ + RY K + T L ++L+F +D E+ G + S A++ R+P
Sbjct: 3 IFTTVGRYMAKRFAITILGVFFVTLLLIFFVDFVEVLRS-GARKDVSAGTLALITLLRIP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + +PF L+ I F +L+RTSEL I RA G+S+WQ + P ++ +I G+F V V
Sbjct: 62 IFAELTLPFAILIGTIAAFLSLSRTSELTIMRAAGLSVWQFVQPALIVAIFFGVFAVTVY 121
Query: 121 NPIATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
NP+A++ + + + + W++ + + AK
Sbjct: 122 NPVASAMKAKSEKIQAEIFQSEKSFATSRGTGSWLRQESVDGPTILHAKTSADRGLTLAG 181
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T + D N+ + A+ A + +L+ V+ G + ++ +
Sbjct: 182 VTLLQFDPANRFYEQIQANKAELRQGYWRLEGVIVQSSGDAVRRYDEYFVSTYLGPAQIM 241
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ SF+++ ++F+ K+ + + E Q + P+++ AM LIAA+ SL+
Sbjct: 242 NSLGSLETLSFWDLPGFIAFAGKAGL-PTRQYELQHQLFLARPILMAAMVLIAATCSLKA 300
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + +V G+ GF + + + G SG++ AA P ++ + LS +LL +
Sbjct: 301 FRFGKIQTMVLTGLTGGFGFFIFSELSRKVGASGLVPVTVAAWGPALVALLLSATVLLYQ 360
Query: 359 EDG 361
EDG
Sbjct: 361 EDG 363
>gi|85706341|ref|ZP_01037435.1| permease, YjgP/YjgQ family protein [Roseovarius sp. 217]
gi|85669114|gb|EAQ23981.1| permease, YjgP/YjgQ family protein [Roseovarius sp. 217]
Length = 363
Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats.
Identities = 77/366 (21%), Positives = 154/366 (42%), Gaps = 12/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + + + L + ++++ +IDL + G+ P + + + ++P
Sbjct: 2 ILERYFGRRFFMSFLGVTVTLVVMLGLIDLMDEL---GDFPELAFGQVLGIVLLKLPEAY 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IIP + ++ ++ +F L RTSELV+ RA G S Q L ++ +G+ + V NP+
Sbjct: 59 YEIIPLVMILASVALFLRLARTSELVVLRASGRSALQGLLAPAAVALAIGLLGLAVGNPL 118
Query: 124 ATSGEKIGIDLIQQWKD--NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K DL+ + + D + W++ S + I A + + +
Sbjct: 119 VAATSKRHHDLVNSYSGQASSDLAIASEGLWLRQSAAEGQTVIYAARASSDLGTLYAPSF 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR------IPIDKNSTTLNIPIKMD 235
K + R A A + L + + + + T+ + D
Sbjct: 179 YDFAPDGKPLRRISATSAQLEEGAWVLTEAKIWDLAQGVNPEASAREDAQMTVPSDLTQD 238
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+E+ K ++ ++ F R F + P+ LVA+ LI+A+ +
Sbjct: 239 RILDSFGSPEYVPIWELPKFIAQLEEAG-FSARRYAIWFQSELAQPVFLVALVLISAAFT 297
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ +R + V + GF L+ I + G++G + + AA P + ++ + + IL
Sbjct: 298 MQHTRGANVGLSVLTAVLLGFGLHYIRNFAQILGENGQIPILLAAWAPPVASLFIGLGIL 357
Query: 356 LQKEDG 361
L EDG
Sbjct: 358 LHLEDG 363
>gi|254453977|ref|ZP_05067414.1| permease, YjgP/YjgQ family [Octadecabacter antarcticus 238]
gi|198268383|gb|EDY92653.1| permease, YjgP/YjgQ family [Octadecabacter antarcticus 238]
Length = 362
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 82/365 (22%), Positives = 151/365 (41%), Gaps = 11/365 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RYF + + T G +L+ +IDL E + G + S+ L+ +P I
Sbjct: 1 MHRYFARRFAWTFAATFGGFFVLMLLIDLVEQLRRYG--GDASLGDMFQLSLLNLPTGIY 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I+P I ++ + F L R+SEL+++RA G S L ++ ++++G + V+NP+
Sbjct: 59 AILPLIMVLATVTTFLGLARSSELIVTRAAGRSALNALIAPLIVTLIIGAIAIGVLNPLV 118
Query: 125 TSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ K + +G S+ W++ + I A + + +D T I
Sbjct: 119 AATLKEYEARENALRSDGPSVLAISENGLWLRQGDDNSQTVIRAGRANLDGTQLQDVTFI 178
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG----RIPIDKNSTTLNIPIKM--DG 236
T R +A A + +L + + + TTL IP + D
Sbjct: 179 TFPPTGGPTRRIEAASANLTQGAWELSEAKAWPLNSGRVAESVATTHTTLRIPSTLTADQ 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ +S +E+ + + F R + F + P L+AM LI A ++
Sbjct: 239 IRDSFGVPSSIPIWELPAFIDRLEVAG-FSAARHQVWFQMELAQPAFLLAMVLIGAGFTM 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + ++V I F L+ + + G++G + AA P + I+ S+ +LL
Sbjct: 298 RHQRGGRTGVMVLTAILICFALFFLRNFAQILGENGQISAGLAAWAPPLAAIAASLGLLL 357
Query: 357 QKEDG 361
EDG
Sbjct: 358 HLEDG 362
>gi|83313005|ref|YP_423269.1| permease [Magnetospirillum magneticum AMB-1]
gi|82947846|dbj|BAE52710.1| Predicted permease [Magnetospirillum magneticum AMB-1]
Length = 367
Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats.
Identities = 74/364 (20%), Positives = 159/364 (43%), Gaps = 6/364 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ Y + + LL + ++ + D+ E+ + P I+ ++A ++P +
Sbjct: 5 PIMSGYIGRQFASAFATVLLVILGIILLFDVIELIRRAAGRPELGITPILLMAFFKLPQM 64
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I+PF ++ ++V F+ L RT ELV++RA GIS+WQ + P + + + GIF + NP
Sbjct: 65 LHTILPFAVMIGSMVCFWRLTRTHELVVARAAGISVWQFITPVLAVAGIFGIFEITTFNP 124
Query: 123 IATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW--ED 178
+A + L + S++ W++ + ++ + ++ + + + D
Sbjct: 125 MAAAMYGRYERLQDELLATKASAFDISEVGLWLREPHENGEMVVHSETVRQDGLVLHIRD 184
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
D+ + R A+ A + + ++++ + G+ + K + + +D
Sbjct: 185 AHFFLYDRPDHFHQRISAESATLVDGAFEVRRAWVMEGGKPSVFKEQMHIPTQLTLDRIH 244
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ SF+++ + F ++ F + L+ P++ M L+AA SL
Sbjct: 245 DNFASPETLSFWQLPGFIRFFERAG-FTANKHRLYLQSLLASPVLYCGMVLMAAVFSLRP 303
Query: 299 -SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+RS + G+ +GF +Y ++ + G S L AA P + + + L
Sbjct: 304 NTRSGGLLARIGAGVAAGFAVYFFSKVIYALGLSATLPQTLAAWTPPLFAGLIGLSGLFH 363
Query: 358 KEDG 361
EDG
Sbjct: 364 LEDG 367
>gi|83952307|ref|ZP_00961039.1| permease, YjgP/YjgQ family protein [Roseovarius nubinhibens ISM]
gi|83837313|gb|EAP76610.1| permease, YjgP/YjgQ family protein [Roseovarius nubinhibens ISM]
Length = 363
Score = 295 bits (757), Expect = 5e-78, Method: Composition-based stats.
Identities = 79/366 (21%), Positives = 147/366 (40%), Gaps = 12/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL YF + +L T + +L+ +IDL + + P+ + +P
Sbjct: 2 ILHFYFARKFLWTLIGIATVFSVLLGLIDLVDELQ---DFPDLPFFDVLEIVLLNLPHAN 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ + +F L R+SELV+ RA G S L V + L+G+ V + NP+
Sbjct: 59 YEILPLVMILATVALFVRLARSSELVVLRASGRSALAGLAGPVAVAALVGLVGVTMFNPV 118
Query: 124 ATSGEKIGIDLIQQWKDNGD--KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K DL+ GD S W++ + I AK P+ T
Sbjct: 119 VAASAKRYNDLVNGHSGLGDNVLAISSEGLWLRQGTEEGQTVIHAKSATPDLSTLFGATF 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST------TLNIPIKMD 235
+ + + R A+ A + + L V + + S T+ + D
Sbjct: 179 TSFTPEGDPMRRLTAESAELGQGQWHLSDVKIWDLANTDNPEASARTQDRLTIRAALTRD 238
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +++ + + F R F + PL L+A+ L+ A+ +
Sbjct: 239 RIIDSFGKPEYIPIWDLPAFIDQLETAG-FSARRYAVWFQMELAQPLFLIALVLVGAAFT 297
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ +R V + GF L+ I + G++G + + AA P + ++ L++ IL
Sbjct: 298 MKHARLANTGTSVLAAVMLGFTLHYIRNFAQVLGENGQIPILLAAWAPPVASLLLALGIL 357
Query: 356 LQKEDG 361
L EDG
Sbjct: 358 LHMEDG 363
>gi|260433487|ref|ZP_05787458.1| permease, YjgP/YjgQ family [Silicibacter lacuscaerulensis ITI-1157]
gi|260417315|gb|EEX10574.1| permease, YjgP/YjgQ family [Silicibacter lacuscaerulensis ITI-1157]
Length = 366
Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats.
Identities = 86/367 (23%), Positives = 157/367 (42%), Gaps = 11/367 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + +L++ + + L+ +IDL E + G+ + S + L P I
Sbjct: 2 ILDRYFARRFLQSFVVIGAIFLTLMILIDLIEQVRRFGD-ADLSFGQLLQLTLLNTPAAI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P + ++ I +F L R+SELV++RAIG S + L V ++ +G V ++NPI
Sbjct: 61 SEMLPLLMILSTIALFVGLARSSELVVTRAIGRSGIRALAAPVALALGIGALAVALLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKI-LPENHIWEDFT 180
A + + L Q+++ G S W++ + I A + D T
Sbjct: 121 AAATSEKYETLSDQYRNGGSSTLSLSRDGLWLRQGSKDGQSVIHAAGTENGDTLKLIDVT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR------IPIDKNSTTLNIPIKM 234
IT + + A A + + + L+ V ++ R + ++ L +
Sbjct: 181 IITFSPQGIPTRQIIAQSAELLDGQWLLRGVKDWSLSRAANPEFFSSEYDTLALPTTLTR 240
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ S Y++ + + ++ F + E + P LV+M LI A+
Sbjct: 241 ERILDRLGHQGLVSIYDLPQLIRDLAQAG-FSTKQYEVWLQAQLARPFFLVSMVLIGAAF 299
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ R I V + GF +Y + + G++G L + AA P I LS+ +
Sbjct: 300 TMRHVRFGGTGIAVLTAVLLGFAIYFVRNFAQILGENGQLPVMLAAWAPPFAAILLSLGL 359
Query: 355 LLQKEDG 361
LL EDG
Sbjct: 360 LLHAEDG 366
>gi|163792837|ref|ZP_02186813.1| Predicted permease [alpha proteobacterium BAL199]
gi|159181483|gb|EDP65995.1| Predicted permease [alpha proteobacterium BAL199]
Length = 365
Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats.
Identities = 93/362 (25%), Positives = 158/362 (43%), Gaps = 4/362 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y + ++ L M +VF++DL E+ + +AA ++P +
Sbjct: 5 PTLSTYIGRQFVFWVLGTFAAIMAIVFLLDLIELLRRGSGKDGAHFGVLVEMAALKLPNM 64
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
QQI+PF L +++ F L RT+ELV++RA GIS+WQ L P + ++LLG V V+NP
Sbjct: 65 GQQILPFAVLFGSMLAFTRLTRTNELVVARAAGISVWQFLMPAIAVALLLGALKVGVVNP 124
Query: 123 IATSGEKIGIDLIQQWKDN---GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
I++ L N W++ + A + +
Sbjct: 125 ISSVMTARFNVLEDTILRNRVDSFMTVGQGGLWIRERTESGQHVVHALAARQNDAELANV 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I ++ + R DA A + +L V P + S + + + Q
Sbjct: 185 LVIRFGHNDEFLERIDARTARLGAGYWELHDTVVTSVKGRPDQRGSIRIPTRLTIQNIQD 244
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ SF+E+ + + F + ++ L+ PL+L+AM LIAA+ SL +
Sbjct: 245 SFASPETMSFWELPGFIRILENAG-FSAVKHRLYWHALLASPLLLIAMVLIAATFSLRLT 303
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R + + G+F+GF+LY + I+ + G S + V AA P +T+ L + LL E
Sbjct: 304 RRGGTLLWASSGLFTGFLLYFMSDIVFALGLSARIPEVLAAWTPATVTMLLGLTSLLHLE 363
Query: 360 DG 361
DG
Sbjct: 364 DG 365
>gi|255263663|ref|ZP_05343005.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
gi|255105998|gb|EET48672.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
Length = 363
Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats.
Identities = 77/365 (21%), Positives = 153/365 (41%), Gaps = 10/365 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + + L + ++ +D+ E + + S ++ L P +
Sbjct: 2 ILHRYFARRFFLAFLGVFVIFFAILGFLDMVEQLGKFSG-DDVSFTQTVGLTLLNTPQAL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ I +F +L R+SE+V++RA G S + L+ + ++L+G+F V V+NPI
Sbjct: 61 YRILPLVMILSTIALFLSLARSSEMVVTRAAGRSAIRALSAPIFVAVLIGLFAVAVLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++ + + S W++ + Q I A+ E T
Sbjct: 121 VAATSQEYEKRASDYRSDDAQVLSVSAEGLWLRQGDNTQQTVIRAEAATLEGTELSRVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
++ I R +AD A + +L + + +ST L +P + Q
Sbjct: 181 LSFTDAG-PITRIEADSARLTPGAWELTNAKSWPLDAPNPEASSTKHDVLRVPSTLTRDQ 239
Query: 239 KFSE--QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
++ +E+ + + F R F + +P +V+M ++AA +++
Sbjct: 240 IRDGFGTPSAIPIWELPAFIKQLETAG-FSARRHAVWFNMELALPAFMVSMVMVAAGLTM 298
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + V I GF Y + + G++G + AA I L++ +LL
Sbjct: 299 RHQRGGRVGLSVLAAIMLGFAFYFLRNFAQILGENGQISATLAAWATPAAAICLALGMLL 358
Query: 357 QKEDG 361
EDG
Sbjct: 359 HLEDG 363
>gi|58038774|ref|YP_190738.1| hypothetical protein GOX0299 [Gluconobacter oxydans 621H]
gi|58001188|gb|AAW60082.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
Length = 396
Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats.
Identities = 90/366 (24%), Positives = 165/366 (45%), Gaps = 9/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + ++ +TL +L LV + D ++ + PN S +AA VP I
Sbjct: 32 TLAIYIARQFMLSTLSMVLALTGLVSLFDFIDLLRRAATRPNVPASLIVKIAALHVPYYI 91
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++PF L+ IV F L R+SEL+++RA GIS WQ L + ++L G+ T I+ +
Sbjct: 92 IYVLPFGILLGGIVCFSRLTRSSELIVARAAGISAWQFLASPLACALLTGLLTTTGISAL 151
Query: 124 ATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQ----QDIFIGAKKI--LPENHI 175
+++ + L Q + G + W++ S+ + A+ + +
Sbjct: 152 SSTMFRSAEMLDQTYLRTGGGPLTLNGGALWLRQSDDGLVPHGVAILHAQDVHLIDGALK 211
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ +D ++++I R +A + + + L +P TL + +
Sbjct: 212 VSGVSIFRLDDRDRLIVRVEAPQGALGDHQWILHGTSVLHPDHLPQQIGDMTLPSDLTVG 271
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + S + + +S +S F + R F L+ +P++ M L++A S
Sbjct: 272 RVQESFASPDTLSVFALPGFISLLERSG-FPSIRHRLHFQSLLALPILAGTMALVSAGFS 330
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R ++ GI +GF L+TI + + FG+SG L PV AA P + L++ +L
Sbjct: 331 MRPTRRGGVARMLGSGIAAGFALFTISKVAEQFGESGALPPVLAAWAPTGAGLCLAVALL 390
Query: 356 LQKEDG 361
L EDG
Sbjct: 391 LHMEDG 396
>gi|260576762|ref|ZP_05844747.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
gi|259021014|gb|EEW24325.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
Length = 364
Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats.
Identities = 78/365 (21%), Positives = 153/365 (41%), Gaps = 9/365 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + ++ L +LG ++ +ID + ++ S+ + +LAA +P +
Sbjct: 2 TLSLYIARRFVWLLLGIILGFATILLLIDSLDQLRRLSG-QGISLGQATLLAAMNMPSSL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P + ++ I +F L R+SELV+ RA G S + L V+ ++L G V V+NP+
Sbjct: 61 YRILPLLMILAAITLFMGLARSSELVVVRASGRSGLRFLATPVLAALLFGAVAVAVLNPL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K L+ ++ +G+ +D W++ P I A + + T
Sbjct: 121 VAATLKRYDTLLSKYAQDGESVLSINDDGLWLRQGGPDGQTVIHAARANADGTELFSVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ-----YGRIPIDKNSTTLNIPIKMDG 236
++ D R +A A + + L + + T L + D
Sbjct: 181 LSFDAAGLPSARTEAREARLGDGAWALVDAKTWPLNLANPEASAARETGTRLPSDLTRDA 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ A+ S + + ++ ++ F + +PL+L AM LIAA ++
Sbjct: 241 IRDSFGTPAAISIWNLPSYIAGLERAG-FSARSHRVWLQTELALPLLLAAMVLIAAGFTM 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+RS + V + GF ++ + + G++G + AA P + ++ +LL
Sbjct: 300 RPTRSGKTGTYVLLALLGGFGIFFLRNFAQVLGENGQIPIAMAAWSPPAAAVLFAVGLLL 359
Query: 357 QKEDG 361
EDG
Sbjct: 360 HLEDG 364
>gi|89054304|ref|YP_509755.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
gi|88863853|gb|ABD54730.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
Length = 364
Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats.
Identities = 79/366 (21%), Positives = 150/366 (40%), Gaps = 11/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y + +L + L M ++ ID+ + ++G + S LA +P I
Sbjct: 2 ILHLYIARRFLVSFGIVLAVFMAILLPIDMADQLRRIG--SDQGFSAVLQLALLNLPRSI 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P ++ +V+F L RTSELV+ RA G S + V+ ++++G ++L++NP+
Sbjct: 60 TGLMPLFVMLATLVLFLGLARTSELVVVRAAGRSALKSAASPVIVALIIGGLSLLILNPL 119
Query: 124 ATSGEKIGIDLIQQWKD--NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + + + W++ + I A + D +
Sbjct: 120 VATTARQYDLTLARLSGLESRSVSVTGEGFWLRQGTGSEQTVIRASATNSDGTHLFDASF 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN------STTLNIPIKMD 235
T D ++ R DA A++ L V + + + + TL + +
Sbjct: 180 FTFDADGALLERMDAREAVLARAAWTLTDVKRWPLAQSDNAEADAELFPTLTLPSTLTPE 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + +E+ + N + F + T F + PL+L AM LI A +
Sbjct: 240 QIRDSFGNPETVPIFELPGFIRQLNDAG-FAALQHRTWFQMQLSSPLLLAAMVLIGAGFT 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + ++V I GF + + + G++G L A P I I L+I L
Sbjct: 299 MRHTRFGKTGVMVLGAILLGFGVVFLRRFAEVLGETGQLAASLVAWTPPIAAILLAIGFL 358
Query: 356 LQKEDG 361
L EDG
Sbjct: 359 LHTEDG 364
>gi|254418566|ref|ZP_05032290.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
gi|196184743|gb|EDX79719.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
Length = 378
Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats.
Identities = 88/364 (24%), Positives = 158/364 (43%), Gaps = 5/364 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G + RY L++ L LV +ID E+ +G + S R L A + P
Sbjct: 16 LGRIERYVLIQQLRSLGVALAVISALVMLIDFVEVSRGVGSDQDLSALRILGLVALKSPS 75
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I Q++PF+ L + + LNR SELV RA G+S W+ + P +++LG+ TV V+
Sbjct: 76 VIVQLLPFVFLFGTLAAYIGLNRRSELVAMRAAGVSAWRFVLPAAGMALVLGVLTVTVLG 135
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
P+A++G+ + + S+ W++ + Q+ + I A + N D T
Sbjct: 136 PLASAGDGLWQRERARISGTAPGASSNDAIWLREGDDQRQMIIRAGRQDRANARLLDVTF 195
Query: 182 ITI----DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ R DA A + + +L V G+ + +S L + +
Sbjct: 196 FIYTTDAEGNRDFSERIDARSAALSAGRWRLTDAVGASIGQRAVTYSSLDLLSSLADEEA 255
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S F+ + ++ + F + +F L+V PL+ AM+++AA+ SL
Sbjct: 256 FERFARPQSTPFWSLPNQIKRIEDAG-FASTAYRLRFQQLLVTPLVFAAMSILAAAFSLR 314
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + GF + + + G + ++ P AA +P ILT + +L
Sbjct: 315 LMRLGDLAKMSVAAVVLGFAFFFLNQFSSAMGSAEVVPPFVAAWLPPILTALAAFTLLFY 374
Query: 358 KEDG 361
EDG
Sbjct: 375 TEDG 378
>gi|254436833|ref|ZP_05050327.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
307]
gi|198252279|gb|EDY76593.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
307]
Length = 364
Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats.
Identities = 83/366 (22%), Positives = 152/366 (41%), Gaps = 11/366 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + + T G +L+ +IDL E + G S+ L+ ++P ++
Sbjct: 2 ILHRYFARRFAWTFTATFGGFFVLMLLIDLVEQLRRYG--GEASLGDMLQLSLLKLPSLL 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P I ++ + F L R+SEL++SRA G S + L ++ ++++G T+ V NP+
Sbjct: 60 YDILPLIMVLATVATFLGLARSSELIVSRAAGRSALRALVAPLIVTVIIGAITIGVFNPL 119
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K + + S+ W++ + I A + +D T
Sbjct: 120 VAATSKEFEARKTTLRSDAPSVLAISENGLWLRQGDDNSQTVIRAGGANLDGTQLQDVTF 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN----STTLNIPIKM--D 235
I K R +A A + L + + ++ TTL IP + D
Sbjct: 180 IRFSKTGHPTRRIEAATANLTIGAWDLTDAKVWPLVGNRVAESVATIHTTLRIPSTLTAD 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +S + +E+ + + F R + + P L+AM LI A +
Sbjct: 240 EIRDSFGVPSSIAIWELPAFIDRLEVAG-FSATRHQVWLQMELAQPAFLLAMVLIGAGFT 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ R + ++V I F L+ + + G++G + AA P + I+ S+ +L
Sbjct: 299 MRHQRGGRTGVMVLAAILICFALFFLRNFAQILGENGQISAGLAAWAPPLAAIAGSLGLL 358
Query: 356 LQKEDG 361
L EDG
Sbjct: 359 LHLEDG 364
>gi|159043738|ref|YP_001532532.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
gi|157911498|gb|ABV92931.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
Length = 365
Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats.
Identities = 81/366 (22%), Positives = 156/366 (42%), Gaps = 10/366 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L YF + ++ + L L L+++ D E + ++ + A LA ++P I
Sbjct: 2 TLQWYFARRFVMSFLSMLGIFAGLIWMTDTVESLRSLSS-DDFGLQEAAALALLQLPATI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++IP I ++ I +F + RTSEL+++RA G S + L V+ + L+G + V+NPI
Sbjct: 61 YEVIPLIMVLATITLFLKMARTSELIVTRAAGRSAIRSLIAPVIVAGLIGGIGISVLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +I + + + S W++ + P+ I I A I D T
Sbjct: 121 VAATSRIAEETRDEVRGRATSVLALSSEGLWLRQAAPEGQIVIHAAGASLGGTILYDVTF 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPIKMD 235
+ D I R A A + L V + + + +D
Sbjct: 181 LRFDADALPIERVAASRAELVPGAWDLTGVKVWDLTGRLNPEAGVRTSAWMQVPSDLTLD 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ ++ +E+ + + F + + P+ LVAM LI A+ +
Sbjct: 241 QIRDSFGDPSAIPIWELPAFIDQLE-AAGFAALSHRVWLHTELASPVFLVAMVLIGAAFT 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + ++V + + GF +Y + + + G++G + +AAA P + + LS+ +L
Sbjct: 300 MRHTRFGRTGLMVLFAVLLGFSMYFLKSFAQVLGEAGKIPVLAAAWFPPLAGVFLSLALL 359
Query: 356 LQKEDG 361
L +EDG
Sbjct: 360 LHQEDG 365
>gi|209964865|ref|YP_002297780.1| predicted permease YjgP [Rhodospirillum centenum SW]
gi|209958331|gb|ACI98967.1| predicted permease YjgP [Rhodospirillum centenum SW]
Length = 364
Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats.
Identities = 84/360 (23%), Positives = 163/360 (45%), Gaps = 3/360 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + ++ L L G + +V+++D E+ + P+ + + ++P I
Sbjct: 6 TLSLYIGRQFVLWFLAILGGMLAIVYLLDTVELLRRAANKPDAAFQIVLTMGLLKLPEIG 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+I+PF+ L + F+ L RT ELV+ RA GIS+WQ + P + + L+G+ V V+NPI
Sbjct: 66 QEIVPFVVLFGGMYTFWRLTRTQELVVVRASGISVWQFMAPVLTATFLIGMTLVGVLNPI 125
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ L ++ ++ W++ Q I A I+P
Sbjct: 126 FSAMLGRYEQLENRYLRGMKSSLDVAESGIWLRQVGEPQAYLIHADAIVPGTLELRQVMV 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + ++ R DA A + + +L+ + GR+ + L + Q+
Sbjct: 186 LLNESDGQVSGRFDAASATLRDGFWELRDAWFNRPGRVGEFLPAYRLPTELTEQKIQEAF 245
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ SF+E+ ++ + + R ++ L+ P++L AM L+AA+ ++ R
Sbjct: 246 ASPDTLSFWELPGFIATLE-ATGLSSVRHRLHWHSLLAQPVLLCAMILLAAAFAMRQVRR 304
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
++A GI + +L+ + I+ + G SG + + AA P +++ L LL EDG
Sbjct: 305 GGALTLIALGIAAALLLFVMQDIVLALGMSGTIPVLLAAWAPAGVSVMLGAAALLHLEDG 364
>gi|295689677|ref|YP_003593370.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
gi|295431580|gb|ADG10752.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
Length = 367
Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats.
Identities = 77/365 (21%), Positives = 146/365 (40%), Gaps = 8/365 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G+L RY K + + L +V +I +I +G + + + L + P
Sbjct: 5 GMLERYVLKRSMSALVGALAVLGAMVMLIAFVDIARNVGTRADVNFFQLLYLTVLQAPAT 64
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I + PF+ L + F LNR SEL+ RA G+S W+ + P S ++G+ T+ ++NP
Sbjct: 65 ILVLAPFVFLFGTMWAFVELNRRSELIAMRAAGVSAWRFIMPAATASFVIGLLTITLLNP 124
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL--PENHIWEDFT 180
+ T+ + + NG + W++ + + I I A+ + +
Sbjct: 125 LTTAMTAR-FETERDHMMNGYLNNAPRGTWLRQGDDKTQIVIRARGRDMIDGSVRLRGVS 183
Query: 181 SITIDKKNK----IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
K R +A+ A + +L V E G I +S ++ +
Sbjct: 184 LFVYTLNKKGVMDFTRRIEANEARLEPGFWRLTGVREATPGAGAIRSDSLSIPSNLDDRT 243
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + + + + + + F + + + PL+ AM+++AA+ SL
Sbjct: 244 ASERFNTPQAVALWRLPATIKRAEDAG-FSAAPFKLRLQQDLATPLLFSAMSVLAAAFSL 302
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + G+ GF + + + GK+ +L P AA P I+ I +L
Sbjct: 303 RLMRLGGLAALAGSGVALGFGFFFFNELCSTLGKADVLAPSIAAWTPPIVAILAGFTLLC 362
Query: 357 QKEDG 361
EDG
Sbjct: 363 YTEDG 367
>gi|16125935|ref|NP_420499.1| hypothetical protein CC_1690 [Caulobacter crescentus CB15]
gi|221234698|ref|YP_002517134.1| hypothetical protein CCNA_01761 [Caulobacter crescentus NA1000]
gi|13423101|gb|AAK23667.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220963870|gb|ACL95226.1| hypothetical membrane spanning protein [Caulobacter crescentus
NA1000]
Length = 368
Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats.
Identities = 78/365 (21%), Positives = 151/365 (41%), Gaps = 8/365 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G+L RY K + + L +V +I +I +G + S R L + P
Sbjct: 6 GMLERYVLKRTMGALVGALAVLSAMVMLIAFVDIARNVGTRADASFLRLLYLTILQAPAT 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I + PFI L + F LNR SEL+ RA GIS W+ + P S ++G+ T+ ++NP
Sbjct: 66 ILVLAPFIFLFGTMWAFVELNRRSELIAMRAAGISAWRFIMPAAASSFVIGLLTITLLNP 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK--ILPENHIWEDFT 180
+ T+ + + NG +++ W++ + + I I A+ ++ + +
Sbjct: 126 LTTAMTAK-FETERDRTMNGYLKEAPKGTWLRQGDDKTQIVIRARARELVDGSVRLRGVS 184
Query: 181 SITIDKKNK----IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
K R +A+ A + +L V E G I +S ++ +
Sbjct: 185 LFVYTLNAKGVMDFTRRIEANEARLEPGFWRLSGVREATPGAGAIRSDSLSIPSNLDDRT 244
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + + + + + + F + + + PL+ AM+++AA+ SL
Sbjct: 245 ASERFNTPQAVALWRLPATIQRTADAG-FSAVPFKLRLQQDLATPLLFAAMSVLAAAFSL 303
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R ++ G+ GF + + + G++ +L P AA P + + + +L
Sbjct: 304 RLMRLGGLAMLAGSGVALGFGFFFFNELCSTLGRADVLAPFVAAWTPPTVALLVGFTLLC 363
Query: 357 QKEDG 361
EDG
Sbjct: 364 YTEDG 368
>gi|83594405|ref|YP_428157.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
gi|83577319|gb|ABC23870.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
Length = 366
Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats.
Identities = 87/363 (23%), Positives = 156/363 (42%), Gaps = 7/363 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + YL + L L+ + D+ EI + G I +A +P+ +
Sbjct: 6 TLTTYIARTYLTALVGATLVVGALLMLFDVIEITRRSGSKA-IGIDVVLEMALYHLPMSL 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q +PF+ + +++F+ L R+SELV+ RA G+S+WQ L P + ++LGI V ++NP+
Sbjct: 65 QSALPFVFMGGAVMIFWKLARSSELVVIRAAGLSVWQFLAPVIAVVVVLGIANVTLLNPL 124
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILP--ENHIWEDF 179
A + SD W++ +NP+ + + A+ +
Sbjct: 125 AAHLYTKYERMDAGMDSGVANPLALSDGGLWLRENNPEGQVVMHAQGVRQVDNALRMTGV 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T + R DA+ A + + L VV GR+ + + + + Q
Sbjct: 185 TIFRYGPDRRFESRIDAETAGLREGALVLTSVVTTYPGRVGERAETLEVPSNLTLPKIQD 244
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF- 298
+ SF+E+ ++F + F + ++ LI PL+L+AM L+ A SL+
Sbjct: 245 SFSPPETVSFWELPAFITFFE-AAGFSAHAHRLHWHSLIASPLLLIAMVLMGAVFSLKPS 303
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + + +GF ++ I + G S L AA P ++T +++ L
Sbjct: 304 QRSVNWLFRIVGAVAAGFGVFFFSKITYTLGLSQTLPVNLAAWSPALVTTMVALAALFHL 363
Query: 359 EDG 361
EDG
Sbjct: 364 EDG 366
>gi|84516314|ref|ZP_01003674.1| permease, YjgP/YjgQ family [Loktanella vestfoldensis SKA53]
gi|84510010|gb|EAQ06467.1| permease, YjgP/YjgQ family [Loktanella vestfoldensis SKA53]
Length = 364
Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats.
Identities = 83/365 (22%), Positives = 151/365 (41%), Gaps = 9/365 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RYF + +L T L L +++ +DL E + + L +P I
Sbjct: 2 ILHRYFARRFLMTFLGVLAVFFLIMLFLDLVEQSRRYAS-AEAGLRDLLTLTLLNIPRAI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+I+P I ++ I +F L R+SELV++RA G S + + + +L+GI V V+NPI
Sbjct: 61 YEILPLIMILAAIGLFLGLARSSELVVTRAAGRSALRAILAPLAVGLLIGIVAVAVLNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDK-QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ K + N W++ + I A + + D T +
Sbjct: 121 VAATSKEYEARGGALRGNASALSIGSSGLWLRQGASDEQTVIRAAGANLDGTVLTDVTFL 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI------PIDKNSTTLNIPIKMDG 236
T R +A A++ + L+ + +G + + + + + D
Sbjct: 181 TFTPDVGPARRVNAASAVLTDGAWVLRNAKVWTFGGTLTPEAGAVTQATMRIASTLTPDQ 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ +S +++ + ++ F R + I P+ L+AM +I AS ++
Sbjct: 241 IRDSFGTPSSIPIWQLPAFIDRLREAG-FSAQRHLVWLHSEIAQPVFLMAMVMIGASFTI 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + V I F++Y I + G++G L AA P + ++LS+ ILL
Sbjct: 300 RHQRGGRTGLAVMTAILLAFVIYFIRNFAQVLGENGQLPAALAAWAPPLAAMALSLGILL 359
Query: 357 QKEDG 361
EDG
Sbjct: 360 HNEDG 364
>gi|144900091|emb|CAM76955.1| permease YjgP/YjgQ family [Magnetospirillum gryphiswaldense MSR-1]
Length = 367
Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats.
Identities = 82/363 (22%), Positives = 158/363 (43%), Gaps = 6/363 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + +L L + +VF+ D+ E+ + + + +A ++P ++
Sbjct: 6 TLSAYIGRQFLLAFASVLAVILGVVFLFDIIELIRRAAGRGDLGVFNLVAMALLKLPQMM 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++PF ++ +V F+ L RT ELV++R+ GIS WQ L P +V LG+ + NP+
Sbjct: 66 HTVLPFAVMIGAMVAFWRLTRTHELVVARSAGISAWQFLTPVLVLVAGLGVIELTAFNPM 125
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQDIFIGAKKILPE--NHIWEDF 179
A + + + S++ W++ + Q+ I + A ++ E
Sbjct: 126 AATMYGRFQKMEDEILLGKTSALDVSEMGLWLREGDAQRQIVLHADQVQQELLTLNLRGV 185
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
++ + R A + + ++L V E + G+ + + L + ++
Sbjct: 186 HVFVLNAEEHFTRRLSAASGRLADGVLELTDVWEMEGGKSSVHHPALKLATELTLERVHD 245
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF- 298
+ SF+++ ++F K+ F + F L+ PL+ AM L+AA SL
Sbjct: 246 NFASPETMSFWQLPAFITFFEKAG-FAATKHRMHFQSLLSSPLLYCAMVLVAAVFSLRPN 304
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R+ + V G+ +GF +Y I+ +FG S L AA P ++ + + LL
Sbjct: 305 MRAGGLLMRVGGGVAAGFGIYFFNKIIYAFGLSATLPQGLAAWSPALVAGLIGVSGLLHL 364
Query: 359 EDG 361
EDG
Sbjct: 365 EDG 367
>gi|315500013|ref|YP_004088816.1| permease yjgp/yjgq family protein [Asticcacaulis excentricus CB 48]
gi|315418025|gb|ADU14665.1| permease YjgP/YjgQ family protein [Asticcacaulis excentricus CB 48]
Length = 379
Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats.
Identities = 83/361 (22%), Positives = 149/361 (41%), Gaps = 7/361 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y L L+ ++F+ID EI +G+ + S + L + P II
Sbjct: 22 LTTYIITRCLMAIGTALVVVSSIIFLIDYVEISKSLGQRGDLSSLQIVGLLMLKSPNIIL 81
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++PF L + F LNR SEL+ RA G+S W+ + P + +LG TV V++P A
Sbjct: 82 VLLPFAFLFGTLSAFVGLNRRSELIAMRAAGMSAWRFVLPAAGMAAILGALTVTVLSPAA 141
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
T Q + + K+ I ++ + +Q I A++ + D + T
Sbjct: 142 TVLADQYDRFAAQQSQSDTRAKTGEIY-LRQGDGKQQTVIHAREQSEDG-RLIDASFWTF 199
Query: 185 DKKN----KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + R DA A++ +LK + G + N+ ++ + +
Sbjct: 200 SLDEAEIPRFLTRIDASEAVLRPGTWQLKSARVSKPGETTLYYNTLSIGSNLSPERAFNR 259
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S +F+++ ++ S+ F + L+ PLM AMT + A+ SL R
Sbjct: 260 FAAPQSTNFWQLPGTIAQIE-SSGFSAAGYVLRLNQLLATPLMFAAMTALGAAFSLRLMR 318
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ GI GFM++ + + S GK+ ++ A ++ +L+ ED
Sbjct: 319 IGGLARLTLSGIVLGFMVFFLNQLCGSLGKAEVIPAFLAGWATPFAAFLTAMTLLVYTED 378
Query: 361 G 361
G
Sbjct: 379 G 379
>gi|306842049|ref|ZP_07474722.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
gi|306287890|gb|EFM59310.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
Length = 286
Score = 275 bits (705), Expect = 5e-72, Method: Composition-based stats.
Identities = 85/287 (29%), Positives = 153/287 (53%), Gaps = 2/287 (0%)
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
+ +LNR ELV++R++G+S WQ L P G++L G+ T+ ++NP+A G ++
Sbjct: 1 MATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPLAAHGFSKAEEIA 60
Query: 136 QQWKDNGDKQKSDII-PWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRK 194
WK S + PW++ + + IGAK IL + D T I D++ I R
Sbjct: 61 AMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFIQFDEQKNIKDRY 120
Query: 195 DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIK 254
DA A + + +L V+ + G+ P + ++ ++ + ++ + F ++
Sbjct: 121 DARTATLQDGYWELTDVMRFARGQEPQKLETFRISTQLRPEYVEEKLASPETIPFTQLRH 180
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
K+ + +S + + Q+ L+ +P +L+AMTLIAA+VSL+F R Q ++ G+ +
Sbjct: 181 KIEVA-RSFGYSANAFDMQYQSLLALPALLMAMTLIAATVSLKFVRFGQSGAMILGGVIA 239
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
GF+LY + ++K+FG +G + P AA +PV++ + LL KEDG
Sbjct: 240 GFVLYVVSVLVKAFGDAGFVPPFVAAWVPVVIATFFGVSFLLHKEDG 286
>gi|114797396|ref|YP_760970.1| YjgP/YjgQ permease [Hyphomonas neptunium ATCC 15444]
gi|114737570|gb|ABI75695.1| putative permease, YjgP/YjgQ family [Hyphomonas neptunium ATCC
15444]
Length = 373
Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats.
Identities = 84/371 (22%), Positives = 155/371 (41%), Gaps = 12/371 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY + L + L ++ + +ID+ E +G ++ L+ ++P+
Sbjct: 4 FSRIQRYILRECLSGLVLVLGILLLAILMIDVVEQMRTIGGDVEITLLDALRLSLMKLPM 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II+Q +PF L ++ F LNR SEL I RA G+S W+ L P +V + LGIF+ L +N
Sbjct: 64 IIEQTLPFALLAATMMAFTRLNRRSELSIIRASGLSAWRFLTPVIVLGVALGIFSSLALN 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
P+A + + D G + Q ++ W++ + I A+++ D
Sbjct: 124 PLAARLSQSFEAERARLLDVGREVVQVAETGVWLRQGDDSSQYVIHARRVEDGGRTLLDV 183
Query: 180 TSI---------TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI 230
I + R DA+ A++ +L+ +VE + P + + +
Sbjct: 184 KIIEEQRLYNGRQPTNDFAFVRRIDAEKAVLNEGFWQLENLVENLPNQAPERRATLAIPT 243
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ + F+E+ + + F ++ R + + L P++ AM LI
Sbjct: 244 SLDAVRLLDEYASPNTVGFWELPRFI-FETRAAGLDTSRYTMRLFTLTATPVLFTAMALI 302
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A L R ++A G+ + LY S G +G V AA P + + +
Sbjct: 303 GALACLRLQRLGGTSRLLATGVLAAIGLYFFTQFSSSLGSTGAAPAVVAAWSPPLFVLFV 362
Query: 351 SILILLQKEDG 361
S+ + +EDG
Sbjct: 363 SLAFIAYREDG 373
>gi|23013662|ref|ZP_00053531.1| COG0795: Predicted permeases [Magnetospirillum magnetotacticum
MS-1]
Length = 312
Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats.
Identities = 66/311 (21%), Positives = 136/311 (43%), Gaps = 6/311 (1%)
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
++P ++ I+PF ++ +V F+ L RT ELV++RA GIS WQ + P + + + GIF
Sbjct: 3 FLKLPQMLHTILPFAVMIGAMVCFWRLTRTHELVVARAAGISAWQFITPVLAVAGMFGIF 62
Query: 116 TVLVINPIATSGEKIGIDLIQQWKD--NGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
+ NP+A + L + + S++ W++ + ++ + ++ + E
Sbjct: 63 EITTFNPMAAAMYSRYERLQDELLAAKSSAFDISEVGLWLREPHDDGEMVVHSETVRQEG 122
Query: 174 HIW--EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+ D D+ + R A+ A + + ++++ + G+ + K +
Sbjct: 123 LVLHIRDAHFFLYDRPDHFYQRIAAETASLEDGAFEVRRAWVMEGGKPSVFKEKMRIPTQ 182
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ +D + SF+++ + F ++ F + L+ P++ M L+A
Sbjct: 183 LTLDRIHDNFASPETLSFWQLPGFIRFFERAG-FTANKHRLYLQSLLASPVLYCGMVLMA 241
Query: 292 ASVSLEF-SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A SL +RS + G+ +GF +Y ++ + G S L AA P + +
Sbjct: 242 AVFSLRPNTRSGGLLARIGGGVAAGFAVYFFSKVIYALGLSATLPQTLAAWTPPLFAGLI 301
Query: 351 SILILLQKEDG 361
+ L EDG
Sbjct: 302 GLSGLFHLEDG 312
>gi|329850878|ref|ZP_08265723.1| hypothetical protein ABI_37970 [Asticcacaulis biprosthecum C19]
gi|328841193|gb|EGF90764.1| hypothetical protein ABI_37970 [Asticcacaulis biprosthecum C19]
Length = 380
Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats.
Identities = 85/362 (23%), Positives = 151/362 (41%), Gaps = 7/362 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y + + L+ L+ +I+ EI + + V+ R P I
Sbjct: 21 LETYILQTCVAMFASALMVVSALILLINYVEISRSVAARADLGGLEVLVMLFQRSPSAIL 80
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++PF L ++ F NLNR SEL+ RA G+S W+ + P V + GI T+ V+NP+A
Sbjct: 81 ILLPFAFLFGSLFAFVNLNRRSELIAMRAAGVSAWRFVLPATVSAFAFGILTIGVLNPVA 140
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGA-KKILPENHIWEDFTSIT 183
+ + + + + ++ I ++ + + + I A + + T
Sbjct: 141 SHLQDVYERKVVAAEAFAPTDPAEAIY-LRQGDSDRQVVIRADGQASAQIGHLRGVTFWI 199
Query: 184 IDKKNK----IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ I R DA AI+ +LK EY + N TL+ + K
Sbjct: 200 FTTDRRGAPSFIERVDAREAILRPGSWQLKDAREYTLDKPAQFYNVLTLSSNLDPQKAFK 259
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S F+ + + N+ + F E + + L+ PLM AMT + A SL
Sbjct: 260 RYASTQSVPFWRLPGLIR-QNQISGFSTTSYELKLHQLLSTPLMFAAMTALGAVFSLRLM 318
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R I+V G+ GF+++ + + S GK+ ++ A P +L + ++ +L+ E
Sbjct: 319 RLGGLTILVTSGVSLGFVIFFVNQLFASMGKADVIPAALAGWSPAVLAMLGAMTLLVYTE 378
Query: 360 DG 361
DG
Sbjct: 379 DG 380
>gi|254467255|ref|ZP_05080666.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
gi|206688163|gb|EDZ48645.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
Length = 367
Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats.
Identities = 76/340 (22%), Positives = 137/340 (40%), Gaps = 12/340 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y+ + +L+ L M LV +IDLNE + E + + L+ +P +
Sbjct: 3 LDLYYARRFLQWFLVICAVLMTLVILIDLNEQIRRF-EGAGLGLPQLVGLSLLNIPAALS 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ +P I ++ IV+F L R+SELV++RAIG S + L V+ + +G+ V ++NPIA
Sbjct: 62 EFLPLIMILTTIVLFVGLARSSELVVTRAIGRSGIRALAAPVLAAAGIGVLAVTMLNPIA 121
Query: 125 TSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDFT 180
+ DL + + + G S W++ + I AK + D +
Sbjct: 122 AATANRYQDLAETYHNGGPSALSLSGEGLWLRQGGARGQSVIHAKGYSGDAADITLHDVS 181
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPIKM 234
+ R A+ A + L + + L +
Sbjct: 182 IHAYSTAGGPVRRIIAESARLDGSNWILTNAKSWPLTAGINPEAGAASHDELQLPTTLTT 241
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D + + S Y++ + + F R E ++ + PL L+AM L+ AS
Sbjct: 242 DRIRDTLGTASGISIYDLPATIREL-SAAGFTTKRYEVRYQAELARPLFLIAMVLVGASF 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
++ +R + V + GF LY I + G++G +
Sbjct: 301 TMRHARFGGTGLAVLMAVLLGFGLYFIRNFAQILGENGQI 340
>gi|78222462|ref|YP_384209.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
gi|78193717|gb|ABB31484.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
Length = 359
Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats.
Identities = 70/362 (19%), Positives = 143/362 (39%), Gaps = 22/362 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY YL+ L + + VID E + + A ++P I
Sbjct: 3 ILTRYIASAYLRVFWLCLASFIAIYLVIDFLEKIGRFLRF-DPQWIHVAQFFLYKIPEIA 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV----LV 119
Q+IP L+ ++ L+R SE++ R+ G+S+ ++ P + + +F + L+
Sbjct: 62 TQVIPLAVLMATLLTLGMLSRNSEIIAMRSCGVSLRKISAPILAIACAASLFVIVSNELI 121
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ + I LI++ N ++++ I + + A+ P++
Sbjct: 122 LPKTYSQMRFIEEVLIRKKSSNTFLRQNN------IWHKDNKAILMARAFDPDHQTLRGV 175
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD---- 235
T + + R DA+ + L KV + + + ++P+ ++
Sbjct: 176 TLWSFSEGMTPSRRIDAEQGSWDGGQWTLWKVTVRDFQGGGVANTTQIASMPVNLNLQIE 235
Query: 236 ---GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+++ E I+K+ K + R E Q + I +P + M +
Sbjct: 236 DLKVVDKYADNMGFLKLREYIQKL----KKGGYETTRYEAQMHSKISLPFASLIMAFLGI 291
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+L SRS+ + + I GF + I I+ SFG++G+L + +A ++ I
Sbjct: 292 PFALRGSRSSGVALGIGASIGFGFAYFIINAILISFGQTGVLPSLVSAWAANVIFALSGI 351
Query: 353 LI 354
+
Sbjct: 352 WL 353
>gi|197105169|ref|YP_002130546.1| hypothetical protein PHZ_c1706 [Phenylobacterium zucineum HLK1]
gi|196478589|gb|ACG78117.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
Length = 367
Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats.
Identities = 83/366 (22%), Positives = 153/366 (41%), Gaps = 8/366 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G L RY L L ++ +I E+ +Q+G + S L R P
Sbjct: 4 LGRLERYVMGRMLAGVGAALAVISAVILLIQFVELSSQVGTRADVGASGIFALTLLRAPS 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+IQ ++PF L I F LNR SELV RA G+S W+ + P + +LG+ V V+N
Sbjct: 64 LIQILLPFCFLFGGIGAFVGLNRKSELVAMRAAGVSAWRFILPSAALAAILGVLAVAVLN 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGA--KKILPENHIWEDF 179
P A + + +N + + W++ + + I I A ++ + + +
Sbjct: 124 PFAAALNARFEAERARLMENYLGDRPQDV-WIRQGDERTQIVIHAKDRETVAGAVVLKGV 182
Query: 180 TSITIDKKNK----IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ +K + R +A A + +L+ V E G I S ++ + +
Sbjct: 183 SVFIYEKTPRGAPEFRRRLEAAEARLMPGFWRLRDVREAGVGESSIRSESLSIRSTLDAE 242
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + +F+ + + + ++ F +F L+ P++ AMT++AA+ S
Sbjct: 243 AAMERFASPEAIAFWRLPAAIRLTEQAG-FSAAGYRLRFQQLLATPVLFAAMTVLAAAFS 301
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L R + G+ GF+++ + K+ IL AAA P ++ + + +L
Sbjct: 302 LRLVRLGGLAGLAGAGVALGFVMFFFNQFAGALAKADILPLFAAAWAPTLVALLAGVTLL 361
Query: 356 LQKEDG 361
EDG
Sbjct: 362 CYTEDG 367
>gi|148261610|ref|YP_001235737.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
gi|326405100|ref|YP_004285182.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
gi|146403291|gb|ABQ31818.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
gi|325051962|dbj|BAJ82300.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
Length = 376
Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats.
Identities = 75/345 (21%), Positives = 139/345 (40%), Gaps = 9/345 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P L Y + +L + G + + D ++ Q + P + R L RVP
Sbjct: 10 PLTLSLYIGRRFLGAVVAMQAGLTAIGALFDFLDLLRQSADKPQATFWRMLALEVLRVPW 69
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ QI+PF L+ I F+ L R+SELV++RA G S+WQ L V G+ L+G+ +
Sbjct: 70 LGMQILPFAVLLGGIFAFWRLTRSSELVVARATGTSVWQFLAVPVAGAALIGVLATTAGS 129
Query: 122 PIATSGEKIGIDLIQQWK--DNGDKQKSDIIPWMQISNP----QQDIFIGAKKILPENHI 175
PI+ L + D+G W++ ++ + A + +
Sbjct: 130 PISAIMFARAEVLYSTYLGVDSGPLSLQGGQLWLRQADDAGGKGGIAILHADAVHLHGKV 189
Query: 176 WED--FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
T + + + + R +A + +L+ P ++ + +
Sbjct: 190 LTTGHITVLRLTAQTTLQERIEAARGQLEPGGWRLESARILTPDGEPRAVSALRIPTTLT 249
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ Q+ ++ SF+ + + +S F + E F L+ +PL+ M L+AA
Sbjct: 250 VGRVQESFASPSALSFWALPGFIRLLRRSG-FSATQHELAFQSLLALPLLCATMVLVAAG 308
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
S+ SR ++ G+ GF+L+ + + GKSG L
Sbjct: 309 FSMRPSRRGGAIQMIGAGVGCGFLLFMLSEVAAQLGKSGALPVGL 353
>gi|302383688|ref|YP_003819511.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
15264]
gi|302194316|gb|ADL01888.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
15264]
Length = 381
Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats.
Identities = 88/364 (24%), Positives = 152/364 (41%), Gaps = 6/364 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G + RY K+ L LV +ID EI +G + S R L + P
Sbjct: 20 LGRIERYVLLQLGKSLAVALGVISALVMLIDFVEISRGLGSDTDLSGVRILGLMLIKSPA 79
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I Q++PF+ L + F LNR SEL+ RA G+S W+ + P ++ G+ TV VI
Sbjct: 80 VIVQLLPFVFLFGTLAAFVGLNRRSELIAMRAAGVSAWRFVLPAAGAALAAGVLTVTVIG 139
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
P+A SG+ + + + + I W++ Q+ + + A + N D T
Sbjct: 140 PLAASGDGMFQRERGRISGAVGGGEQEAI-WLREGEGQRQMVVRAARQDRANARLLDVTF 198
Query: 182 ITI--DKKNK--IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
D + + R DA A + + +L V Q G+ ++ L + D
Sbjct: 199 FIYATDPEGRRAFTERIDAASASLSAGRWRLVDAVGAQTGQRATRYSTLDLPSSLADDEA 258
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S F+ + ++ + F + + L+ PL AMT++AA+ SL
Sbjct: 259 FERFARPQSTPFWSLPGQIQRIE-AAGFSSTAYRLRLQQLLSTPLAFAAMTILAAAFSLR 317
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + GF + + + G + ++ P AA +P +LT + +L
Sbjct: 318 LMRLGDLARMAVAAVVLGFAFFFLNQFSAAMGSAEVVPPFIAAWLPAVLTALAAFTLLFY 377
Query: 358 KEDG 361
EDG
Sbjct: 378 TEDG 381
>gi|167646491|ref|YP_001684154.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
gi|167348921|gb|ABZ71656.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
Length = 367
Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats.
Identities = 75/365 (20%), Positives = 144/365 (39%), Gaps = 8/365 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G++ RY K L + L +LV +I +I +G L + P
Sbjct: 5 GMIERYVLKKTLGSLAAALAVVSVLVMLIAFVDISKSVGTRAEVGFGELLFLTVLQAPAT 64
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I + PFI L + F LNR SEL+ RA G+S W+ + P V + ++G+ T+ ++NP
Sbjct: 65 ILLLTPFIFLFGTLGAFVGLNRRSELIAMRAAGVSAWRFIMPAAVAAFVMGLLTLTLLNP 124
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP--ENHIWEDFT 180
+ + +N + + W++ + + + I A+ +
Sbjct: 125 LTAAMSAQFETSRNAMMEN-YLKSAPKGLWLRQGDDKTQVVIRARARDQINGAVRLRGVS 183
Query: 181 SITI----DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ + R +AD A + +L V G I + TL +
Sbjct: 184 LFVYAVQPNGALQFSQRIEADEARLEPGFWQLSGVRVAMPGAGAIRSETYTLPSNLDDRT 243
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + + + + + + + F + + ++ PL+ AM+++AA+ SL
Sbjct: 244 ASERFSNPQAIAVWRLPETIKRTE-AAGFSSIPFRLRLQQVLATPLLFAAMSVLAAAFSL 302
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + G+ GF + + + GK+ +L P AA P I+ + + +L
Sbjct: 303 RLMRLGGLAGLAGAGVTLGFAFFFFNELCGALGKADVLTPAMAAWTPPIVALLAGLTLLC 362
Query: 357 QKEDG 361
EDG
Sbjct: 363 YTEDG 367
>gi|254294287|ref|YP_003060310.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
gi|254042818|gb|ACT59613.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
Length = 368
Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats.
Identities = 77/332 (23%), Positives = 141/332 (42%), Gaps = 8/332 (2%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + L L + + ++D+ E +G S+ L A + P +I + +
Sbjct: 9 YIFWECVAGLLMTLGIILGAILLVDMVEQLRTVGARTELSLLGAFQLTALKAPQLILETM 68
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF LV +++ + LNR+SEL RA G+S W+ L P + LG + +I+P+AT
Sbjct: 69 PFAILVGSMLAYSKLNRSSELSAIRASGVSAWRFLAPTFFLAAFLGCIAMTIIDPLATFS 128
Query: 128 EKIGID----LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
L+ D K W++ I + + +N ++
Sbjct: 129 NAKYETEKTLLLDDTGAVKDSAKRQKKVWLRQGTDTTQSVIHGEVLPNDNSSLQNVEIFI 188
Query: 184 IDKKN---KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
++K + R DA A + +L+ V EY PI ++ L +
Sbjct: 189 LEKDGDEFEFQRRIDAKKATLRPGFWQLEGVTEYSSDNEPIKQDYLALTTTLDPSTILDR 248
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S SF+++ + + + ++ + + + + L+ +P++L AM LI A V L R
Sbjct: 249 GTDEKSISFWKLPQLIQDARRAGL-DADKYILKLHTLLAMPVLLGAMALIGAVVCLRLRR 307
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG 332
S ++A GI +GF+L+ + + K SG
Sbjct: 308 SGGVTQLLAAGIGAGFLLFFVNQVSKGLASSG 339
>gi|304392006|ref|ZP_07373948.1| permease [Ahrensia sp. R2A130]
gi|303296235|gb|EFL90593.1| permease [Ahrensia sp. R2A130]
Length = 372
Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats.
Identities = 87/373 (23%), Positives = 167/373 (44%), Gaps = 13/373 (3%)
Query: 1 MPG-ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L Y K +L+ T++ L L+ ++D+ E+ + + + + R
Sbjct: 1 MIGQTLSVYLAKNFLRNTMFVFLVFFFLIALVDMLELSRRTARIDDVGFFDVVSIVMLRA 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P++ + I+PF L LN+ ELV++RA G+S+WQ L P + ++G+ L+
Sbjct: 61 PVLSENIVPFAVLFGASASLLLLNKRLELVVARASGVSVWQFLAPICAAAAVVGLVMGLI 120
Query: 120 INPIATSGEKIGIDLIQQ--WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
NP++ + + L K+ G + W +I+ P D+ + A
Sbjct: 121 YNPLSLRLQASSLSLEGVVFAKNTGVTSDTTWNFWTRIARPDGDMVLRAAVAAERGKKLS 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIY---------NDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ DK K R DA A ++ L++ G P +
Sbjct: 181 GVSLYLFDKDGKPEQRIDAASANFAEAVPGTDSLPNRYVLERANILTVGEKPKVVPVMVV 240
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ I + + SF+++ + + ++ +T+++ ++ +PL+ VAM
Sbjct: 241 PVSITAELLEIRQTSAERVSFWDLDDQAELAERAG-RPPEPFQTRWHSVLALPLLFVAMV 299
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+A +VSL F+R + G+ +GF+LY + ++ +FG +G++ PV AA P +
Sbjct: 300 LLAGTVSLTFARFGINGKRILTGVVAGFVLYVLTKLVVTFGSNGLVSPVIAAWSPATVGS 359
Query: 349 SLSILILLQKEDG 361
++I +LL +EDG
Sbjct: 360 LIAITVLLHQEDG 372
>gi|119383652|ref|YP_914708.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
gi|119373419|gb|ABL69012.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
Length = 373
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 85/374 (22%), Positives = 158/374 (42%), Gaps = 18/374 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y + +L+ + ++F+ID+ E + + N +S A L+ +
Sbjct: 2 ILSTYVARRFLRMLVMIAAIFGAILFLIDIVEQIRRFSD-ENIGLSGAAGLSLLNITASF 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P IT++ I +F NL+R+SELV RA G S ++L V + L G+ V V+NP+
Sbjct: 61 YSILPLITVLAGIALFLNLSRSSELVAIRASGRSGIRVLAAPAVTAALAGMLAVAVLNPV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKS--DIIPWMQISNPQ---------QDIFIGAKKILPE 172
+ K D + Q + G + S D W++ + P + I A + P+
Sbjct: 121 VAATTKRYDDAVAQMRSGGGQTVSVGDNAVWLRQALPTRNGNGDETSGQVVIRASRASPD 180
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY---QYGRIPIDKNSTTLN 229
D T + R DA A + +L + E+ Q + + + L
Sbjct: 181 ATTLYDATFMVFAPDTGPTRRIDAATARLTQGAWELTDIKEWPLTQPNPETMARTAPRLE 240
Query: 230 IPIKMD--GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+P + + + + +++ + ++ F R + F + PL+L AM
Sbjct: 241 LPTDLTAARIRDSFGRPEAIPVWQLPAFIKGLERAG-FSAQRHKVWFQMELARPLLLAAM 299
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
IAA ++ R + ++V G L+ + + + G +G + P A P I+
Sbjct: 300 IAIAAVFTMRHMRGRRMGLLVLGAFGCGIGLFFLRNLAQVLGDNGGIPPALAGWAPPIVA 359
Query: 348 ISLSILILLQKEDG 361
+ ++ LL+ EDG
Sbjct: 360 LLFALGALLRLEDG 373
>gi|39997021|ref|NP_952972.1| hypothetical protein GSU1923 [Geobacter sulfurreducens PCA]
gi|39983909|gb|AAR35299.1| membrane protein, putative [Geobacter sulfurreducens PCA]
gi|298506038|gb|ADI84761.1| membrane protein, YjgQ-related [Geobacter sulfurreducens KN400]
Length = 358
Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats.
Identities = 68/357 (19%), Positives = 134/357 (37%), Gaps = 13/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY YLK L + + VID E ++ ++P II
Sbjct: 3 ILTRYIAGAYLKILGLCLASFVAIYLVIDFLEKIGRLLRFQPR-WIDIIQYFICKLPEII 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+IP L+ ++ L+R SE+V R G+ + ++ P +V + + + T+ +
Sbjct: 62 TQVIPLAVLMSTLLTLGMLSRNSEIVAMRGCGVGLGRISAPLIVIAAAVSLLTIFSNEFV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN---PQQDIFIGAKKILPENHIWEDFT 180
S + + D +K + + +N + + A+ P T
Sbjct: 122 LPSSYRQMR-----YVDQVLIRKQGTNTFFRQNNIWHKDESAIMMARVFDPGRQALRGIT 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGF 237
+ + R DA + K V ++ S + +K++
Sbjct: 177 LWRFSDGMRPVSRIDAAEGTWDGARWTFKTVTVRGLAGPSVETRTLASLPAELNLKIEDL 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + F+++ + K+ + R E Q + I +P + M + +L
Sbjct: 237 KVVDKYADNMGFFKLRDYVRKL-KAGGYDTTRYEAQMHSKISLPFASLIMAFLGIPFALR 295
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS+ + + I GF + +I+ SFG++GIL P+ +A +L I +
Sbjct: 296 GGRSSGVALGITASIGIGFAYFITNSILISFGQTGILPPLISAWAANVLFALSGIWL 352
>gi|189425644|ref|YP_001952821.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
gi|189421903|gb|ACD96301.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
Length = 359
Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats.
Identities = 72/360 (20%), Positives = 157/360 (43%), Gaps = 14/360 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M GI+ RY +L+ L G + + ++D E + + S+S ++P
Sbjct: 1 MFGIVGRYLAGTWLRLFLLCQGGFLAVYLILDFMEKLGRFSK-AGASLSAILQFFLFKIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ Q +PF L+ ++ L+R+SEL R+ G+SI +++ P ++ +L + ++
Sbjct: 60 EMLGQTMPFAVLMATLLALGMLSRSSELTALRSCGLSIPRIVLPILMLGLLGSLVLLVNS 119
Query: 121 NPIAT----SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
+ E I +I++ N + ++I W + +N + + AK P
Sbjct: 120 EFVVPKSYQQMEHIEKVVIKKQSVNTFFRLNNI--WFRSNN----LILQAKVFEPLTRTL 173
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM-- 234
+ T + + + R DA+ A+ + +L +V + S L++P+ +
Sbjct: 174 KGVTVWELSADMQPVRRMDAEQALYGSGGWELLQVRTRSFAGQGGVVASARLSVPLTLKV 233
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D + + SF ++ + + S + + R T + + +P M ++
Sbjct: 234 DDLRILDNNADNFSFRKLREY-AVSLEKGGYPAGRYRTMMHAKLALPFGAFVMVVLGIPF 292
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+L+ R++ + V G+ GF + I ++S+G+SG+L P AA ++ + I +
Sbjct: 293 ALKTGRTSGVAMGVGAGVAIGFAYFIINAAVQSYGRSGVLPPFVAAWGANLIFVLTGIWL 352
>gi|296532232|ref|ZP_06894979.1| permease YjgP/YjgQ family protein [Roseomonas cervicalis ATCC
49957]
gi|296267439|gb|EFH13317.1| permease YjgP/YjgQ family protein [Roseomonas cervicalis ATCC
49957]
Length = 369
Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats.
Identities = 86/365 (23%), Positives = 165/365 (45%), Gaps = 8/365 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + + L + LV + D E+ + + + A +AA R+P ++
Sbjct: 6 TLSAYIARRFAGMALAMVAALAALVALFDFIELLRRAATRADAGFALVASIAALRLPYVV 65
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QI+PF L+ IV F+ L+R SELV++RA G+S W L V+ ++ +G + V++P+
Sbjct: 66 LQILPFAVLLGGIVAFWRLSRASELVVARAAGVSAWSFLLGPVLVALAMGTLAITVVSPL 125
Query: 124 ATSGEKIGIDLIQQWKDN--GDKQKSDIIPWMQISNPQQD-----IFIGAKKILPENHIW 176
+ + L + N G + W++ ++ + I G ++ + +
Sbjct: 126 SAAMMARAERLDATYLRNATGLSSLAGGKLWLRQADESVEPGGVAILAGVPEVGRDGFLL 185
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ ++ I R +A LA + L++ V + R P+ + L + D
Sbjct: 186 RGASLWRFSATDRPIGRAEAPLARLEPGAWVLQEAVSFGRDRQPLPAATLRLPTSLTPDR 245
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
++ + SF+ + ++ S F R F+ L+ +PL+ AM L+AA S+
Sbjct: 246 IEETFASPDTLSFWALPGFIAVLE-SAGFSAVRHRLTFHSLLSLPLLAAAMALLAAGFSM 304
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+R ++ GI +GF L+ + + + FG++G L AA P + + ++ +LL
Sbjct: 305 RHARRGGVGRMLGLGIAAGFALFLLDKVAEEFGQAGTLPVALAAWAPSVAGLLFALTLLL 364
Query: 357 QKEDG 361
EDG
Sbjct: 365 YTEDG 369
>gi|322418226|ref|YP_004197449.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
gi|320124613|gb|ADW12173.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
Length = 360
Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats.
Identities = 70/361 (19%), Positives = 139/361 (38%), Gaps = 19/361 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K YL+ L + + V+D E ++ S + T++P ++
Sbjct: 3 ILTRYVAKAYLRMLGLCLGSFITIYLVVDFMEKVSRF-TRAGASWKYLVLFFITKIPEMV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ + + +SEL R+ G+S+ ++ P + S+L+ + +++ +
Sbjct: 62 VDSAPLAVLMATLLTLGSFSLSSELTAMRSCGVSLARISAPILAISVLMSLVVLMLGEFV 121
Query: 124 AT--SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++I I + K + W + + A P + + T
Sbjct: 122 IPKSYAQRIYIQEVLIQKKSPSTYFRQHNIWHREEGN----VLRASLFEPSQNQLKGVTL 177
Query: 182 ITIDKK-NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI-------PIK 233
+ K + R DA L + N K VV ++ I + + P
Sbjct: 178 WEVQPKTGLPLRRTDAALGQLGNQGWVFKDVVVREFEGADISRTRKYPQLAAPLKLKPAD 237
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ K+S+ R KK+ ++ + R TQF+ I +P M +
Sbjct: 238 LKVLGKYSDSMTLRELNRYCKKI----QAGGYDATRYITQFHSRISLPFGCAVMAFLGIP 293
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+L RS+ + I GF+ I +++ S G+ G+L P+AAA + ++
Sbjct: 294 FALRGGRSSGIAFGIGLSIGVGFLYVIINSVIISVGQVGLLPPIAAAWATNFIFLAAGGW 353
Query: 354 I 354
+
Sbjct: 354 L 354
>gi|332160138|ref|YP_004296715.1| hypothetical protein YE105_C0514 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318607296|emb|CBY28794.1| putative Permease [Yersinia enterocolitica subsp. palearctica Y11]
gi|325664368|gb|ADZ41012.1| hypothetical protein YE105_C0514 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859698|emb|CBX70034.1| lipopolysaccharide export system permease protein lptG [Yersinia
enterocolitica W22703]
Length = 356
Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats.
Identities = 79/365 (21%), Positives = 147/365 (40%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L T L L + L +I + ++G+ +YS + + +P
Sbjct: 1 MFGVLDRYIGRTILNTILMTLFMLVSLSGIIKFVDQLRKVGQ-GDYSAASAGMYTLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + + FI +++ +
Sbjct: 120 EWVAPQGEQMARNFRAQQMYGGSLLSTQSGLWAKDGSD----FIYIQRVSGD-KELTGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIK 233
DK+++++ + A A ++ +L +V E S TL P K
Sbjct: 175 IYHFDKQDRLLSVRYAATATFEDNLWRLSQVDESDLSNPNKVTGSQTLTGEWKTNLTPEK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + ++ K + S + + R E + I P + M L+A S
Sbjct: 235 LGVVAMNPDSLSISGLHDYSKYLRQSGQ----ESSRYELNMWGKIFAPFSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + V GIF GF+ Y + I + PV AL+P IL + +S+
Sbjct: 291 FIFGPLRSVPMGVRVVTGIFFGFVFYVLDQIFGPLSLVYNIPPVIGALLPSILFLLISVY 350
Query: 354 ILLQK 358
+LL++
Sbjct: 351 LLLKR 355
>gi|123440875|ref|YP_001004866.1| hypothetical protein YE0502 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122087836|emb|CAL10622.1| putative membrane protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 356
Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats.
Identities = 78/365 (21%), Positives = 147/365 (40%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L T L L + L +I + ++G+ +YS + + +P
Sbjct: 1 MFGVLDRYIGRTILNTILMTLFMLVSLSGIIKFVDQLRKVGQ-GDYSAASAGMYTLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + + FI +++ +
Sbjct: 120 EWVAPQGEQMARNFRAQQMYGGSLLSTQSGLWAKDGSD----FIYIQRVSGD-KELTGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIK 233
D++++++ + A A ++ +L +V E S TL P K
Sbjct: 175 IYHFDQQDRLLSVRYAATATFEDNLWRLSQVDESDLSNPNKVTGSQTLTGEWKTNLTPEK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + ++ K + S + + R E + I P + M L+A S
Sbjct: 235 LGVVAMNPDSLSISGLHDYSKYLRQSGQ----ESSRYELNMWGKIFAPFSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + V GIF GF+ Y + I + PV AL+P IL + +S+
Sbjct: 291 FIFGPLRSVPMGVRVVTGIFFGFVFYVLDQIFGPLSLVYSIPPVIGALLPSILFLLISVY 350
Query: 354 ILLQK 358
+LL++
Sbjct: 351 LLLKR 355
>gi|294678215|ref|YP_003578830.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
gi|294477035|gb|ADE86423.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
Length = 366
Score = 245 bits (627), Expect = 6e-63, Method: Composition-based stats.
Identities = 82/367 (22%), Positives = 157/367 (42%), Gaps = 11/367 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y + + + L ++F+I++ E ++ + ++S A LAA VP +
Sbjct: 2 TLSLYIARRFGQAFLIVAGAFWGVLFLIEMVEQIRRL-DPARGALSDAAHLAALSVPSTL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I P + ++ +V F L R+SELV+ RA G S ++L V ++L+G+ V V NPI
Sbjct: 61 YTIFPLVVMLSGVVAFLGLARSSELVVIRAAGRSALRMLLAPVTVALLIGVLLVAVGNPI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKS--DIIPWMQISN-PQQDIFIGAKKILPENHIWEDFT 180
++ K ++ Q + G + S WM+ I A + + T
Sbjct: 121 VSATSKRAEEIEGQLRAEGRQTVSIGREGLWMRQGTADGGQAVIHAMRGNADATALYQVT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT----LNIPIKMDG 236
+ D K + R DA A + L + ++ GR + T +++P +
Sbjct: 181 FLLFDAKAGPVRRIDAASAWLTPGAWVLSEAKDWPLGRSTNPERDATRAQTISLPSTLTA 240
Query: 237 --FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
++ +E+ + + ++ F R + PLML AM L+AA
Sbjct: 241 ESIADSFGAPSAMPIWELPGFIR-ALEAAGFSARRHIVWLQVELAQPLMLAAMVLVAAGF 299
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ +R V + +G L+ + + + G +G + AA P + + L++ +
Sbjct: 300 TMRPARFGGTGGRVMLALLAGLALFFLRNVAQVLGDNGQIPAALAAWAPPAIALMLALTL 359
Query: 355 LLQKEDG 361
+LQ+E+G
Sbjct: 360 VLQQEEG 366
>gi|22124661|ref|NP_668084.1| hypothetical protein y0748 [Yersinia pestis KIM 10]
gi|45440497|ref|NP_992036.1| hypothetical protein YP_0645 [Yersinia pestis biovar Microtus str.
91001]
gi|51594885|ref|YP_069076.1| membrane protein, permease [Yersinia pseudotuberculosis IP 32953]
gi|108808931|ref|YP_652847.1| hypothetical protein YPA_2940 [Yersinia pestis Antiqua]
gi|108810814|ref|YP_646581.1| hypothetical protein YPN_0649 [Yersinia pestis Nepal516]
gi|145600503|ref|YP_001164579.1| hypothetical protein YPDSF_3249 [Yersinia pestis Pestoides F]
gi|153949000|ref|YP_001402495.1| permease [Yersinia pseudotuberculosis IP 31758]
gi|153997519|ref|ZP_02022619.1| putative membrane protein [Yersinia pestis CA88-4125]
gi|162420587|ref|YP_001608340.1| hypothetical protein YpAngola_A4049 [Yersinia pestis Angola]
gi|165925751|ref|ZP_02221583.1| putative permease [Yersinia pestis biovar Orientalis str. F1991016]
gi|166010149|ref|ZP_02231047.1| putative permease [Yersinia pestis biovar Antiqua str. E1979001]
gi|166214265|ref|ZP_02240300.1| putative permease [Yersinia pestis biovar Antiqua str. B42003004]
gi|167399516|ref|ZP_02305040.1| putative permease [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167423672|ref|ZP_02315425.1| putative permease [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|170025892|ref|YP_001722397.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
YPIII]
gi|186893895|ref|YP_001871007.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
PB1/+]
gi|218930455|ref|YP_002348330.1| hypothetical protein YPO3439 [Yersinia pestis CO92]
gi|229839083|ref|ZP_04459242.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229896571|ref|ZP_04511738.1| conserved inner membrane protein [Yersinia pestis Pestoides A]
gi|229899646|ref|ZP_04514787.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229901017|ref|ZP_04516141.1| conserved inner membrane protein [Yersinia pestis Nepal516]
gi|270489197|ref|ZP_06206271.1| inner membrane family protein [Yersinia pestis KIM D27]
gi|294505143|ref|YP_003569205.1| hypothetical protein YPZ3_3034 [Yersinia pestis Z176003]
gi|21957470|gb|AAM84335.1|AE013676_8 hypothetical protein y0748 [Yersinia pestis KIM 10]
gi|45435354|gb|AAS60913.1| putative membrane protein [Yersinia pestis biovar Microtus str.
91001]
gi|51588167|emb|CAH19773.1| putative membrane protein, permease [Yersinia pseudotuberculosis IP
32953]
gi|108774462|gb|ABG16981.1| membrane protein [Yersinia pestis Nepal516]
gi|108780844|gb|ABG14902.1| putative membrane protein [Yersinia pestis Antiqua]
gi|115349066|emb|CAL22028.1| putative membrane protein [Yersinia pestis CO92]
gi|145212199|gb|ABP41606.1| membrane protein [Yersinia pestis Pestoides F]
gi|149289156|gb|EDM39236.1| putative membrane protein [Yersinia pestis CA88-4125]
gi|152960495|gb|ABS47956.1| putative permease [Yersinia pseudotuberculosis IP 31758]
gi|162353402|gb|ABX87350.1| putative permease [Yersinia pestis Angola]
gi|165922363|gb|EDR39540.1| putative permease [Yersinia pestis biovar Orientalis str. F1991016]
gi|165991056|gb|EDR43357.1| putative permease [Yersinia pestis biovar Antiqua str. E1979001]
gi|166204497|gb|EDR48977.1| putative permease [Yersinia pestis biovar Antiqua str. B42003004]
gi|167052020|gb|EDR63428.1| putative permease [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167057842|gb|EDR67588.1| putative permease [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169752426|gb|ACA69944.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
YPIII]
gi|186696921|gb|ACC87550.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
PB1/+]
gi|229682356|gb|EEO78448.1| conserved inner membrane protein [Yersinia pestis Nepal516]
gi|229687138|gb|EEO79213.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695449|gb|EEO85496.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229700349|gb|EEO88381.1| conserved inner membrane protein [Yersinia pestis Pestoides A]
gi|262363204|gb|ACY59925.1| hypothetical protein YPD4_3021 [Yersinia pestis D106004]
gi|270337701|gb|EFA48478.1| inner membrane family protein [Yersinia pestis KIM D27]
gi|294355602|gb|ADE65943.1| hypothetical protein YPZ3_3034 [Yersinia pestis Z176003]
Length = 358
Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats.
Identities = 79/367 (21%), Positives = 145/367 (39%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L T L LL + L +I + ++G+ +YS + + +P
Sbjct: 1 MFGVLDRYIGRTILNTILMTLLMLVSLSGIIKFVDQLRKVGQ-GDYSAASAGMYTILSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIAVFFPMAALLGALLGLGTLASRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE+ + Q G + W + + FI +++ E
Sbjct: 120 EWVAPQGEQTARNFRTQQMYGGSLLSTQSGLWAKDGSD----FIYIQRVSGE-SELTGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
DK+++++ + A A N +L +V E S TL P
Sbjct: 175 IYHFDKEDRLLSVRYAATATYEKDNKTWRLSQVDESDLSNPTQVTGSQTLTGEWKTNLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + + ++ K + S + + R E + + P + M L+A
Sbjct: 235 EKLGVVAMDPDSLSISGLHDYSKYLQQSGQ----ESNRYELSMWSKVFAPFSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + V GIF GF+ Y + + + P+ AL+P +L + +S
Sbjct: 291 LSFIFGPLRSVPMGVRVVTGIFFGFVFYVLDQVFGRLSLVYGIPPMLGALLPSMLFLLIS 350
Query: 352 ILILLQK 358
I +LL++
Sbjct: 351 ICLLLKR 357
>gi|117925963|ref|YP_866580.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
gi|117609719|gb|ABK45174.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
Length = 371
Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats.
Identities = 74/373 (19%), Positives = 147/373 (39%), Gaps = 22/373 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL+RY + +L+ + + L F++D E + G + L R+P
Sbjct: 2 PILFRYLLQLFLQGFVKVFSIFIALFFLMDGAEQIRRFGGRDHVIWQDMVELIFLRMPHF 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
Q +P I L+ + V L R +EL + R+ G+S+ ++L PF++G +++ +L+++
Sbjct: 62 FTQFLPPIALLTTLFVVTRLTRLNELTVIRSGGVSLVRILIPFLLGGVMVAGVQMLLLDQ 121
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKS------------DIIPWMQISNPQQDIFIGAKKIL 170
I I ++ N +Q + W++ + AK+
Sbjct: 122 IVPRTNAAAERSI--FRMNLPEQAALYESMVSLEGVRKDNLWIRDGGQ----ILHAKRAY 175
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-GRIPIDKNSTTLN 229
+ + + T ++ ++ R DA A N+ L Y++ G + T +
Sbjct: 176 GDKRLLLEVTIFRFTPEHDLLMRADAHKATWENEGWVLHNGQIYRFNGHTTQSEPFTRMP 235
Query: 230 IPIKMDGFQ--KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
I ++ Q + + Q S + K + + Y + PL +A
Sbjct: 236 WAINLEKEQIKRATPQPEELSLQALWKHADRLAR-EGYDATPYWVTLYRKLADPLTTLAA 294
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
L+A +L R + G +GF ++ ++ + + G L P AA PV+
Sbjct: 295 ILLAFPFALRLHRMGGTFRSMLMGFITGFFMFVVVDLFTALGFGERLPPFLAAFAPVMFF 354
Query: 348 ISLSILILLQKED 360
I + +LL E+
Sbjct: 355 ICIGGFLLLHLEE 367
>gi|322834555|ref|YP_004214582.1| permease YjgP/YjgQ family protein [Rahnella sp. Y9602]
gi|321169756|gb|ADW75455.1| permease YjgP/YjgQ family protein [Rahnella sp. Y9602]
Length = 356
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 78/365 (21%), Positives = 140/365 (38%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + T + L + L +I + ++G+ YS + + VP
Sbjct: 1 MFGVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GGYSAAGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + + FI +++
Sbjct: 120 EWVAPQGEQMARNYRAQQMYGGSLLSTQNGVWAKDGHD----FIYIERV-AGEKELTGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIK 233
+++NK+ + A A N + KL +V E S TL P K
Sbjct: 175 IYHFNEENKLQSVRYASSATFDNGEWKLSQVDESDLTDQLQITGSQTLTGVWKTNLTPDK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + + +K + S + R + + I PL + M L+A S
Sbjct: 235 LGVVALDPDALSISGLHNYVKYLKQSGQ----EAKRYQLNMWSKIFSPLSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + V GI GF+ Y + I + P+ AL+P L +S+
Sbjct: 291 FIFGPLRSVPMGVRVVTGICFGFLFYVLDQIFGPLSLVYSIPPILGALLPSGLFFVISMF 350
Query: 354 ILLQK 358
+LL+K
Sbjct: 351 LLLKK 355
>gi|262367136|gb|ACY63693.1| membrane protein [Yersinia pestis D182038]
Length = 358
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 79/367 (21%), Positives = 145/367 (39%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L T L LL + L +I + ++G+ +YS + + +P
Sbjct: 1 MFGVLDRYIGRTILNTILMTLLMLVSLSGIIKFVDQLRKVGQ-GDYSAASAGMYTILSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIAVFFPMAALLGALLGLGTLASRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE+ + Q G + W + + FI +++ E
Sbjct: 120 EWVAPQGEQTARNFRTQQMYGGSLLSTQSGLWAKDGSD----FIYIQRVSGE-SELTGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
DK+++++ + A A N +L +V E S TL P
Sbjct: 175 IYHFDKEDRLLSVRYAATATYEKDNKTWRLSQVDESDLSNPTQVTGSQTLTGEWKTNLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + + ++ K + S + + R E + + P + M L+A
Sbjct: 235 EKLGVVAMDPDSLSISGLHDYSKYLQQSGQ----ESNRYELSMWSKVFAPFSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + V GIF GF+ Y + + + P+ AL+P +L + +S
Sbjct: 291 LSFIFGPLRSVPMGVRVVTGIFFGFVFYVLDHVFGRLSLVYGIPPMLGALLPSMLFLLIS 350
Query: 352 ILILLQK 358
I +LL++
Sbjct: 351 ICLLLKR 357
>gi|37528300|ref|NP_931645.1| hypothetical protein plu4479 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787738|emb|CAE16851.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 359
Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 88/367 (23%), Positives = 152/367 (41%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L+T L L + L +I E ++G+ Y+ + VP
Sbjct: 1 MFGVLDRYIGRTILQTILMTLFMLVSLSGIIKFVEQLRKVGQ-GEYTTISAGLYVLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IQ P L+ ++ L SELV+ +A G + Q+ + +I L I T+++
Sbjct: 60 KDIQIFFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAGSVMKTAIPLVILTMVIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G ++ W D FI ++I+ + I +
Sbjct: 120 EWVAPQGEQMARNYRAQKMLGGSLVSTNKGMW----TIDGDDFIYIQRIVSDTEI-KGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQY-------GRIPIDKNSTTLNIP 231
+ K++ K A A+ ND KL +V E G I + L P
Sbjct: 175 IYHFNDDKKLLSVKYAASAVYDKDNDLWKLSQVEESDLTDSKKITGSQRISADWKILLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+++ E + Y+ IK + S + + R + + I PL + M L+A
Sbjct: 235 EQLNVVALEPEALSISGLYQYIKYLKQSEQESG----RYQLNMWKKIFAPLSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + + GI GF+ Y + I + V AAL+P +L +++S
Sbjct: 291 LSFIFGPLRSVPMGVRIVTGISFGFLFYVLNEIFGPLSLVYSVPAVLAALLPSLLFLTVS 350
Query: 352 ILILLQK 358
I +LL++
Sbjct: 351 IYLLLKR 357
>gi|271498969|ref|YP_003331994.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech586]
gi|270342524|gb|ACZ75289.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech586]
Length = 356
Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats.
Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY K T + L + L +I + ++G+ YS+ + VP
Sbjct: 1 MFRVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GGYSVMGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGALATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +GE++ + Q G + W + N F+ +++ +N +
Sbjct: 120 EWVAPAGEQMARNYRSQMMYGGSMLSTQSGLWAKDGND----FVYIQRVAGDN-ELQGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-------GRIPIDKNSTTLNIPIK 233
DK +K++ + A A+ N KL +V E G + T P K
Sbjct: 175 LYHFDKHSKLLSVRYAASAVYENGSWKLSQVEESDLNDSKQIGGSQTVSGEWKTNLTPDK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + R Y+ IK + S + R + + + PL + M L+A S
Sbjct: 235 LGVVALDPDALSIRGLYDYIKYLRQSGQ----EANRYQLNMWSKLFAPLSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + + GI GF+ Y + I + PV AL+P L + +S++
Sbjct: 291 FIFGPLRSVPAGMRIVIGISFGFLFYVLDQIFGPLSLVYHMPPVLGALLPSALFLFISVM 350
Query: 354 ILLQK 358
+LL++
Sbjct: 351 LLLKR 355
>gi|83945295|ref|ZP_00957644.1| hypothetical protein OA2633_00970 [Oceanicaulis alexandrii
HTCC2633]
gi|83851465|gb|EAP89321.1| hypothetical protein OA2633_00970 [Oceanicaulis alexandrii
HTCC2633]
Length = 367
Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats.
Identities = 83/368 (22%), Positives = 151/368 (41%), Gaps = 8/368 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G LWRY F L + + ++ +ID E +G S + L+ + P
Sbjct: 1 MIGRLWRYLFIQTLIGLIGAAVIITAVILLIDFVETSRDIGTRVGISAFQALHLSLLKAP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L++Q +PFI L + FF LNR SEL++ RA G S W++L P + + L G + L +
Sbjct: 61 LLVQDTLPFIVLFGVLFTFFRLNRRSELIVMRASGYSAWRILAPVAILAALTGAISTLAL 120
Query: 121 NPIATSGEKIGIDLIQ---QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
NP+ + + + + W++ + I I A++ ++
Sbjct: 121 NPLGAASNARFEATREALFEGEGQSSGANQSGPIWLRETTATGYIMITAQQQGGDDATLT 180
Query: 178 DFTS--ITIDKKNKII--HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
+ + + + R A+ A + L +EY G + L +
Sbjct: 181 EPVFRQYVLSESGAPLLDRRITAERAELNGGFWSLTNAIEYAPGGQATELGDVALPTNVG 240
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + SF+++ ++ + + + + E +++ L+ PLMLVA L+ +
Sbjct: 241 RQALFERARSPGAVSFWQLPAVIASARDAGL-SSLAYELRWHGLLAQPLMLVAAALMGIA 299
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+L R A G +GF+LY +M G SG + P+ AA L +
Sbjct: 300 ATLRLHRLGGAAGFAAAGATAGFILYFSQELMLGLGASGAITPLTAAWTTPALFSLAGLF 359
Query: 354 ILLQKEDG 361
+ EDG
Sbjct: 360 FIAATEDG 367
>gi|270265133|ref|ZP_06193396.1| hypothetical protein SOD_k01710 [Serratia odorifera 4Rx13]
gi|270041067|gb|EFA14168.1| hypothetical protein SOD_k01710 [Serratia odorifera 4Rx13]
Length = 356
Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats.
Identities = 73/365 (20%), Positives = 137/365 (37%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + ++G+ +YS + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIIMTLFMLVSLSGIIKFVDQLRKVGQ-GDYSALSAGMFTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGQLATRSELVVMQASGFTRMQIAGSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A G+++ + Q G + W + N FI +++
Sbjct: 120 EWVAPQGDQMARNYRAQQMYGGSLLSTKNGLWAKDGND----FIYIERV-AGEKELSGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIK 233
+ + ++ + A A + KL +V + TL P K
Sbjct: 175 IYHFNDQRRLETVRYAATASFEDGVWKLSQVDTSDLTNEKQVTGTQTLTGEWKTNLTPDK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + +K + S + R + + + PL + M L+A S
Sbjct: 235 LGVVALDPTSLSISGLHNYVKYLKQSGQ----EANRYQLNMWSKVFSPLSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + V GI GF+ Y + I + PV AL+P +L + +S+
Sbjct: 291 FIFGPLRSVPMGVRVVTGISFGFLFYVLDQIFGPLSLVYNMPPVLGALLPSMLFLLISVY 350
Query: 354 ILLQK 358
+LL++
Sbjct: 351 MLLKR 355
>gi|165936803|ref|ZP_02225370.1| putative permease [Yersinia pestis biovar Orientalis str. IP275]
gi|167420748|ref|ZP_02312501.1| putative permease [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|165915452|gb|EDR34062.1| putative permease [Yersinia pestis biovar Orientalis str. IP275]
gi|166961554|gb|EDR57575.1| putative permease [Yersinia pestis biovar Orientalis str.
MG05-1020]
Length = 358
Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats.
Identities = 78/367 (21%), Positives = 144/367 (39%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L T L LL + L +I + ++G+ +YS + + +P
Sbjct: 1 MFGVLDRYIGRTILNTILMTLLMLVSLSGIIKFVDQLRKVGQ-GDYSAASAGMYTILSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIAVFFPMAALLGALLGLGTLASRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE+ + Q G + W + + FI +++ E
Sbjct: 120 EWVAPQGEQTARNFRTQQMYGGSLLSTQSGLWAKDGSD----FIYIQRVSGE-SELTGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
DK+++++ + A A N +L +V E S TL
Sbjct: 175 IYHFDKEDRLLSVRYAATATYEKDNKTWRLSQVDESDLSNPTQVTGSQTLTGEWKTNLTS 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + + ++ K + S + + R E + + P + M L+A
Sbjct: 235 EKLGVVAMDPDSLSISGLHDYSKYLQQSGQ----ESNRYELSMWSKVFAPFSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + V GIF GF+ Y + + + P+ AL+P +L + +S
Sbjct: 291 LSFIFGPLRSVPMGVRVVTGIFFGFVFYVLDQVFGRLSLVYGIPPMLGALLPSMLFLLIS 350
Query: 352 ILILLQK 358
I +LL++
Sbjct: 351 ICLLLKR 357
>gi|222054622|ref|YP_002536984.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
gi|221563911|gb|ACM19883.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
Length = 357
Score = 238 bits (609), Expect = 8e-61, Method: Composition-based stats.
Identities = 72/368 (19%), Positives = 146/368 (39%), Gaps = 24/368 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I R+ Y + L + + V+D E ++G + + A+ TR+P +
Sbjct: 2 KIFNRFVAAAYARILCLCLGTFIAIFLVVDFLE---KIGRFAGANPAYIALFFLTRIPEV 58
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I Q L+ ++ + +SEL R G+S+ ++ P +V + + I + +
Sbjct: 59 ICQTSAMAVLMATLLTLGMFSMSSELTAMRGCGLSLGRIAMPILVIAFSVSILNLAINEY 118
Query: 123 IATS----GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ G+ I LI++ N ++ +I W + N + A P + +
Sbjct: 119 VLPRCIVQGQYIREVLIEKKSPNLFFRQMNI--WHRDDN----FILKANLFDPASGQLKG 172
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP------- 231
T + + R DA A + L VV ++ I K S ++P
Sbjct: 173 ITVWRMGAGMQPEQRLDAATAKLDAGGWLLTDVVAREFSESNIIKTSEVASMPVPLNLRA 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ +KFS+ R +K+ + + R Q + I + + M +
Sbjct: 233 TDLKVMRKFSDNMGIRELAAYCEKL----RKGGYDPTRYLAQMHGRISLAFAPLVMAFLG 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
++ SRS+ + ++ + GF + + +I+ SFG++G+L PV +A + + +
Sbjct: 289 VPFAVRGSRSSGIALGISASLGIGFGFFVLNSIVLSFGQAGVLSPVISAWSTNGIFLMIG 348
Query: 352 ILILLQKE 359
I L+ E
Sbjct: 349 IWFALKAE 356
>gi|317494175|ref|ZP_07952591.1| inner membrane protein yjgQ [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316917948|gb|EFV39291.1| inner membrane protein yjgQ [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 356
Score = 238 bits (608), Expect = 9e-61, Method: Composition-based stats.
Identities = 81/365 (22%), Positives = 146/365 (40%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + T + L + L +I + ++G+ +YS + + VP
Sbjct: 1 MLGVLDRYIGRTIFSTIMATLFMLVSLSGIIKFVDQLRKVGQ-GDYSAAGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + + +I L I T+ +
Sbjct: 60 KDIEVFFPMAALLGALLGLGMLAQRSELVVMQAAGYTRMQIASSVMKTAIPLVILTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE+ + Q G + W + FI +++ E I + +
Sbjct: 120 EWVAPQGEQAARNYRAQQMYGGSLLSTQTGLWAKDGTD----FIFIQRVTGEKSI-QGVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIK 233
+ D + + + A+ A + KL +V E S TLN P K
Sbjct: 175 IYSFDNERHLQKLRYANSATFEGHQWKLSQVEESNLTDSKRITGSQTLNGVWKTNLTPDK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + Y +K + S + + R + + I PL + M L+A S
Sbjct: 235 LGVVAMSPDSLSISGLYHYVKYLKQSGQ----ESSRYQLNMWSKIFAPLSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + V GI GF Y + I + PV A++P +L + +S+
Sbjct: 291 FIFGPLRSVPMGVRVLTGISFGFFFYVLDEIFGPLSLVYSVPPVLGAILPSLLFLLISVY 350
Query: 354 ILLQK 358
+LL+K
Sbjct: 351 MLLRK 355
>gi|251791279|ref|YP_003006000.1| permease YjgP/YjgQ family protein [Dickeya zeae Ech1591]
gi|247539900|gb|ACT08521.1| permease YjgP/YjgQ family protein [Dickeya zeae Ech1591]
Length = 356
Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 79/365 (21%), Positives = 143/365 (39%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY K T + L + L +I + ++G+ YS+ + VP
Sbjct: 1 MFRVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GGYSVMGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +GE++ + Q G + W + N F+ +++
Sbjct: 120 EWVAPAGEQMARNYRSQMMYGGSMLSTQSGLWAKDGND----FVYIQRV-AGESELLGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-------GRIPIDKNSTTLNIPIK 233
DK+NK++ + A A+ N KL +V E G + T P K
Sbjct: 175 IYHFDKQNKLLSVRYAASAVYENGGWKLSQVEESDLSDGKQIGGSQTVSGEWKTNLTPDK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + R Y+ I + S + R + + + PL + M L+A S
Sbjct: 235 LGVVALEPDALSIRGLYDYINYLRQSGQ----EASRYQLNMWSKLFAPLSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + + GI GF+ Y + I + PV A +P L + +SI+
Sbjct: 291 FIFGPLRSVPAGMRIVIGISFGFLFYVLDQIFGPLSLVYHIPPVLGASLPSALFLFISIM 350
Query: 354 ILLQK 358
+LL++
Sbjct: 351 LLLKR 355
>gi|218508596|ref|ZP_03506474.1| putative permease protein [Rhizobium etli Brasil 5]
Length = 239
Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 86/238 (36%), Positives = 134/238 (56%), Gaps = 2/238 (0%)
Query: 125 TSGEKIGIDLIQQWKD-NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G++ + + W+ N +K+ IPW++ + + D+ IGA+ + D I
Sbjct: 3 AWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDAVLIH 62
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D ++I R+DA A + + +L VVE + G IP+ K S L +K D Q+
Sbjct: 63 FDSSGRVILRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQDFVQERLTA 122
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ F+++ +++ + KS ETQF L+ PL+LVAMTLIAA+VSL+FSR NQ
Sbjct: 123 PETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVSLKFSRFNQ 181
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
R ++ GI SGFMLY I ++K+FG SG++ P A IPV++ ++L ILL +EDG
Sbjct: 182 SRSVILGGILSGFMLYVITVLVKAFGSSGVVPPFVATWIPVVVALALGATILLHQEDG 239
>gi|157368809|ref|YP_001476798.1| permease YjgP/YjgQ family protein [Serratia proteamaculans 568]
gi|157320573|gb|ABV39670.1| permease YjgP/YjgQ family protein [Serratia proteamaculans 568]
Length = 356
Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 71/365 (19%), Positives = 135/365 (36%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + ++G+ Y+ + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIIMTLFMLVSLSGIIKFVDQLRKVGQ-GEYTALSAGMFTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGQLATRSELVVMQASGFTRMQIAGSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A G+++ + Q G + W + FI +++
Sbjct: 120 EWVAPQGDQMARNYRAQQMYGGSLLSTKNGLWAKDGTD----FIYIERV-AGEKELSGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIK 233
+ + ++ + A A + KL +V + TL P K
Sbjct: 175 IYHFNDQRRLETVRYAASASFEDGVWKLSQVDTSDLTNEKQVTGTQTLTGEWKTNLTPDK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + +K + S + R + + + PL + M L+A S
Sbjct: 235 LGVVALDPTSLSISGLHNYVKYLKQSGQ----EANRYQLNMWSKVFSPLSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + V GI GF+ Y + I + PV AL+P +L + +S+
Sbjct: 291 FIFGPLRSVPMGVRVVTGISFGFLFYVLDQIFGPLSLVYNMPPVLGALLPSMLFLLISVY 350
Query: 354 ILLQK 358
+LL++
Sbjct: 351 MLLKR 355
>gi|242240954|ref|YP_002989135.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech703]
gi|242133011|gb|ACS87313.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech703]
Length = 356
Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats.
Identities = 80/365 (21%), Positives = 148/365 (40%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY K T + L + L +I + ++G+ +YS+ + VP
Sbjct: 1 MFRVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GSYSVLGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGNLATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + N F+ +++ EN
Sbjct: 120 EWLAPPGEQMARNYRSQMMYGGSMLSTQSGLWAKDGND----FVYIQRVQGEN-ELVGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIK 233
D ++K++ + A A+ N +L +V E S T++ P K
Sbjct: 175 IYHFDNQSKLLSVRYAASAVYENGVWQLSQVEESDLRSNKQISGSQTISGEWKTGLTPDK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + R Y+ I + S++ R + + + PL + M L+A S
Sbjct: 235 LGVVALDPDALSIRGLYDYINYLKQSDQ----EASRYQLNMWSKLFAPLSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + + GI GF+ Y + I + PV AL+P L + +SI+
Sbjct: 291 FIFGPLRSVPAGVRIVIGISFGFLFYVLDQIFGPLSLVYRIPPVLGALLPSALFLFISIM 350
Query: 354 ILLQK 358
+LL++
Sbjct: 351 LLLKR 355
>gi|320539288|ref|ZP_08038958.1| putative conserved inner membrane protein [Serratia symbiotica str.
Tucson]
gi|320030680|gb|EFW12689.1| putative conserved inner membrane protein [Serratia symbiotica str.
Tucson]
Length = 356
Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats.
Identities = 75/365 (20%), Positives = 141/365 (38%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + ++G+ +Y++ + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIIMTLFMLVSLSGIIKFVDQLRRVGQ-GDYTVLGAGMFTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGQLATRSELVVMQASGFTRMQIAGSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A G+++ D Q G + W + N FI +++ E
Sbjct: 120 EWVAPQGDQMAHDFRAQQMYGGSLLSTKSGLWAKDGND----FIYIERVSGE-KELAGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIK 233
+ + ++ + A A + KL +V + + TL P K
Sbjct: 175 IYHFNDRRRLETVRYAATASFEDGVWKLSQVDTSDLTNEELVTGTQTLTGEWKTNLTPEK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + + +K + S + R + + I PL + M L+A S
Sbjct: 235 LGVVALDPTSLSIKGLHNYVKYLKQSGQ----EANRYQLNMWNKIFSPLSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS I V GI GF+ Y + I + PV AL+P ++ + +S+
Sbjct: 291 FIFGPLRSVPMGIRVVTGISFGFLFYVLDQIFGQLSLVYNMPPVLGALLPSMMFLLISMY 350
Query: 354 ILLQK 358
+LL++
Sbjct: 351 MLLKR 355
>gi|296283031|ref|ZP_06861029.1| permease [Citromicrobium bathyomarinum JL354]
Length = 365
Score = 235 bits (601), Expect = 6e-60, Method: Composition-based stats.
Identities = 68/360 (18%), Positives = 138/360 (38%), Gaps = 7/360 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y K + L+ ++++ ++DL Q+ E+P + + + A+ RVP++I
Sbjct: 10 TLTLYLAKMFSLRIFAVLVMLVLVLMMLDLLSNSGQILEVPGNTEADLWLYASLRVPMLI 69
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+ +P+ L+ I+ LN+ SE++ +A G+S Q+L P +V ++L+ + +
Sbjct: 70 QRFLPYSVLLATIITLVTLNQNSEVIAMKAAGLSAHQVLAPLIVTALLVAGISFAFNERV 129
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDFTS 181
T + I + A+ D T
Sbjct: 130 VTRATAQLTAWEATEFGALPDKPKSKGS---IYLEDGQNILTARSYSGGGPAPTLRDVTY 186
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP-IKMDGFQKF 240
+I + DA +A+ D ++ + G + + S P I +
Sbjct: 187 YRRSPTAEITQKVDAPMAVHGPDGWAMQNPSVFTVGTASLAQPSQLTVAPGITPATIELQ 246
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ F+++ + + + E ++ I PL V M ++ A +R
Sbjct: 247 EIDPTTQPFWQLGSSIE-AYRQAGRDTEELEANYWHKISGPLAAVLMPILGAVAGFGLAR 305
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S Q + G+ GF + I + G G P AA P +L + + +L++ E+
Sbjct: 306 SGQLFMRALIGMALGFAYFVIDNAALAMGDFGGYPPFLAAWAPFLLFLMIGETVLVRTEE 365
>gi|95928710|ref|ZP_01311456.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
gi|95135055|gb|EAT16708.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
Length = 360
Score = 235 bits (601), Expect = 6e-60, Method: Composition-based stats.
Identities = 66/361 (18%), Positives = 139/361 (38%), Gaps = 13/361 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + K T L + + ++D E + E + A A ++PLI+ Q+
Sbjct: 6 RYLLTTFTKITSLSLAAFVGIYLLVDFFEKVDDFLEHEAAAHLYIA-YFAWKIPLIVSQM 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ + +T+EL RA GI + +++ PF+V ++LL + +
Sbjct: 65 LPLTILLGTFLTLGGFTKTNELTAMRAGGIGLQRIVTPFLVTAVLLTGINFALNEFLVPV 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
G + + + + + W + +N + LPE + +D
Sbjct: 125 GTQRSNHIFRTEVKGKTQMLAKRNDLWFREAN----TLYHIQLALPEKKQLRGISLYLVD 180
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI------DKNSTTLNIPIKMDGFQK 239
+ ++ R +A A D+ + + V + ++N L + + F
Sbjct: 181 SQLNLLTRIEAQAATFKEDQWQAEHVTVRHFDPQSRQLTAQKEENLRLLPLKKTPEDFGT 240
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + SF ++ K+S + R + + P + M +A +L+ S
Sbjct: 241 VSGKNEELSFTQL-SKISTQMQREGLDATRYRVDMHSRLSTPFACIIMAFLAIPFALQKS 299
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R+ + ++ + G + + + + + G S +L P AA I+ + + +LL
Sbjct: 300 RNVNLSLGISISVLIGISFFIVQSTLIALGYSTVLPPFIAAWAANIIFALVGLFLLLSTR 359
Query: 360 D 360
D
Sbjct: 360 D 360
>gi|148265755|ref|YP_001232461.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
gi|146399255|gb|ABQ27888.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
Length = 359
Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 68/359 (18%), Positives = 130/359 (36%), Gaps = 14/359 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I RY Y K L + + V+D E + N A+ TRVP I
Sbjct: 2 KIFSRYIATAYAKMLGLCLGAFIAIYLVVDFLEKIGRFAR-ANAEWKFIALFFLTRVPEI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I Q L+ ++ L+ SEL R G+S+ ++ P + + + T+ V
Sbjct: 61 ICQTASMAVLMATLLTLGMLSLNSELTAMRGCGLSLARITAPIFAIAFAVSLSTLFVSEF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G + + D K S I + ++ + A+ P + T
Sbjct: 121 VMPRCNTQGQYIREVLID--KKSPSTFFRQQNIWHKDENYILKARLFDPATGNLKGITLW 178
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIK---MD 235
+ + R +A + + + VV + I + + + +K +
Sbjct: 179 KTGTEMEPQQRIEATQGELRGNDWLFRDVVIREMAGGNIISTKSFPALLVKLNLKAADLK 238
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
KFS+ R K+ + + R Q + I + V M I +
Sbjct: 239 VVGKFSDNMGIRELISYCDKL----RKGGYDPTRFLAQMHSRISLSFAPVIMAFIGIPFA 294
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS+ + + + GF + I +++ SFG++G+L P+ +A ++ I + I
Sbjct: 295 MRGGRSSGIALGIGTSLGIGFAYFIINSVILSFGQAGVLPPLVSAWATNLIFIMIGIWF 353
>gi|77919519|ref|YP_357334.1| hypothetical protein Pcar_1923 [Pelobacter carbinolicus DSM 2380]
gi|77545602|gb|ABA89164.1| conserved hypothetical membrane protein [Pelobacter carbinolicus
DSM 2380]
Length = 362
Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 65/370 (17%), Positives = 133/370 (35%), Gaps = 20/370 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + RY + + + L +++ E + E + S++ + P
Sbjct: 1 MTPLYSRYILATFFRLFGLAIGAFAGLYLLVEFFERIDDFIEY-HASVTLCVAYFLNKTP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LII Q+ P L+ + R+ ELV A GIS+ ++ P + +L + +
Sbjct: 60 LIITQVAPLACLMAVFMTLGGFTRSGELVAMHAGGISLAKIAAPMLRMGLLFSLIILAAN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQK-SDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
I + ++ G W++ + ++I P +
Sbjct: 120 EVIVPPSIQRARHILTTEVRGGPAVHYKQDKIWLR----HNRSILNIRQIEPVQQTLKGI 175
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP------IDKNSTTLNIPIK 233
T ++ DK +I R DA A+ + + V ++ ++P+
Sbjct: 176 TLLSFDKNFRIQQRFDAGSAVYSGGRWYCQDAVTRRFDTTSGNLLTEQRLAEKIEDLPVV 235
Query: 234 MDGFQ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ F+ K +E F+ + KK+ K ++ R + + I P + MT
Sbjct: 236 PEDFKVPGSKRNEDLPISEFHRLGKKL----KREGYNPTRFQVDMHARIAAPFGCLMMTF 291
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+ ++ R + +A + G + + + + +FG SG P+ AA IL +
Sbjct: 292 LGIPFAIRKGRGASMALGIAISVAIGALYFILNATLLAFGYSGTFPPIIAAWSANILFLL 351
Query: 350 LSILILLQKE 359
+ L E
Sbjct: 352 FGTWLFLHSE 361
>gi|85060085|ref|YP_455787.1| putative transport protein [Sodalis glossinidius str. 'morsitans']
gi|84780605|dbj|BAE75382.1| putative transport protein [Sodalis glossinidius str. 'morsitans']
Length = 356
Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats.
Identities = 80/364 (21%), Positives = 140/364 (38%), Gaps = 17/364 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I E ++G+ YS + +P
Sbjct: 1 MFGVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVEQLRKVGQ-GGYSALGAGLFTLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ +L SELV+ +A G S Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMSALLGALLGLGSLATRSELVVMQASGFSRMQVAGSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +GE++ + Q G + W + N FI ++++ +
Sbjct: 120 EWVAPAGEQMAYNYRTQMIYGGSMLSTQNGLWAKDGND----FIFIERVVGSD-ELAGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIK 233
DK +++ + A A N KL +V E TLN P K
Sbjct: 175 IYHFDKADRLQSLRYAATATFSNGSWKLSQVDESDLTNDKQITGRQTLNGEWKTNLTPDK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + Y + + S + + R + + I P + M L+A S
Sbjct: 235 LGVVALEPNSLSISGLYNYVNYLKQSGQ----ESNRYQLNMWSKIFSPFSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + V GI GF+ Y + I + PV AL+P + + +SI+
Sbjct: 291 FIFGPLRSVPMGVRVVIGISFGFLFYVLDQIFGPLSLVYNMPPVFGALLPSMAFLIISIV 350
Query: 354 ILLQ 357
+LL+
Sbjct: 351 MLLR 354
>gi|218659050|ref|ZP_03514980.1| putative permease protein [Rhizobium etli IE4771]
Length = 272
Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats.
Identities = 91/244 (37%), Positives = 139/244 (56%), Gaps = 2/244 (0%)
Query: 57 TRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
R+PL +QQ IPF+ L V + V LNR ELV++RA GIS+WQ + PFV GS+ LG+ T
Sbjct: 1 MRLPLNLQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFVAGSLALGVLT 60
Query: 117 VLVINPIATSGEKIGIDLIQQWKD-NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+NP+A G++ + + W+ N +K+ IPW++ + + D+ IGA+ +
Sbjct: 61 TTALNPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTK 120
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
D I D ++I R+DA A + + +L VVE + G IP+ K S L +K D
Sbjct: 121 LVDAVLIHFDSSGRVIMRQDAATAKLEDGYWQLNGVVERKPGEIPLRKASVQLRTNLKQD 180
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + F+++ +++ + KS ETQF L+ PL+LVAMTLIAA+VS
Sbjct: 181 FVQERLTAPETIGFFDLSNRIA-AAKSFGISTKALETQFNSLLSQPLLLVAMTLIAATVS 239
Query: 296 LEFS 299
L+FS
Sbjct: 240 LKFS 243
>gi|294637822|ref|ZP_06716094.1| membrane protein, YjgP/YjgQ family [Edwardsiella tarda ATCC 23685]
gi|291089021|gb|EFE21582.1| membrane protein, YjgP/YjgQ family [Edwardsiella tarda ATCC 23685]
Length = 356
Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats.
Identities = 76/365 (20%), Positives = 147/365 (40%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + T + L + L +I + ++G+ +YS++ + +P
Sbjct: 1 MFGVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GDYSVAGAGLFTLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGMLAQRSELVVMQAAGFTRMQVASAVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A G++ + Q G + W + + FI +++ + +
Sbjct: 120 EWVAPQGDQAARNYRAQQMYGGSLLSTQGGLWAK----DGNQFIYISQVVNDRT-LAGVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIK 233
T++ + K+ + A A + KL +V E S TL P K
Sbjct: 175 IYTLNDQRKLTSLRYATAATFDGKQWKLTQVEESNLTNPEQITGSRTLTGVWKTNLTPDK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + Y +K + S + + R + + I PL + M L+A S
Sbjct: 235 LGVVAVSPDSLSISGLYHYVKYLQQSGQ----ESNRYQLNLWSKIFAPLSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + V GI GF+ Y + I + PV A++P L +++SI
Sbjct: 291 FIFGPLRSVPMGVRVLTGICFGFVFYVLDQIFGPMSLVYNVPPVIGAVLPSALFLAISIY 350
Query: 354 ILLQK 358
+LL++
Sbjct: 351 LLLRR 355
>gi|224368912|ref|YP_002603074.1| putative permease [Desulfobacterium autotrophicum HRM2]
gi|223691629|gb|ACN14912.1| putative permease [Desulfobacterium autotrophicum HRM2]
Length = 359
Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats.
Identities = 68/363 (18%), Positives = 137/363 (37%), Gaps = 22/363 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY+ K + + + + + +D + N+S+ +G ++P +
Sbjct: 3 ILHRYWLKEFTRFFAIVQMLLLCIFLAVDYLSNMEKFLR-SNFSLIQGLGYILLKIPFMF 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q P ++ IVVF +NR +EL+ + G+S++ LL P V+ ++L + + + I
Sbjct: 62 VQFTPAGVVLATIVVFSLMNRNNELLALKGSGVSVYHLLKPVVLVGVILAMTMIFLGETI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ K K W I + I P ++ T +
Sbjct: 122 VPYTMAKANHIR---SSTLKKNKKIYATWENIWIRDGNKIIHINYFNPADNSISGITITS 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI-----------PI 232
KI R DA+ + + +L V+E P D+++ + P
Sbjct: 179 FGADFKIATRVDAENGRFDSGQWQLSNVLE---QNNPGDEHNADIQFYDHKAFALDVEPA 235
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ K ++Q + + I K+ + + F+ I P++ + M L+ A
Sbjct: 236 DLKTVAKKTDQMSIQELKAYIHKIE----NEGYDATHYIVDFWAKIAFPIICLVMALVGA 291
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + + +A GI F + + S G G++ P +A ++ I L+
Sbjct: 292 GAGMLSAAKENMPLGIALGIGVAFCYWVVHGFCTSLGYGGMIPPFLSAWTADLIFICLTT 351
Query: 353 LIL 355
+ L
Sbjct: 352 IFL 354
>gi|253686793|ref|YP_003015983.1| permease YjgP/YjgQ family protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251753371|gb|ACT11447.1| permease YjgP/YjgQ family protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 358
Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats.
Identities = 75/367 (20%), Positives = 143/367 (38%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + ++G+ YS + VP
Sbjct: 1 MFGVLDRYIGKTIFTTIMTTLFMLVSLSGIIKFVDQLRKVGQ-GEYSALGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ GE++ + Q G + W + N FI +++ +
Sbjct: 120 EWVSPQGEQMARNYRSQMISGGSMISTQGGLWAKDGND----FIYIERV-AGDKELSGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
D NK++ + A A +D+ +L +V E S TL+ P
Sbjct: 175 IYHFDDSNKLLSVRYAASAEFEDDRNVWRLSQVDESDLSDGKQIGGSQTLSGEWKTNLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + + R + K + S + + R + + I P+ + M L+A
Sbjct: 235 DKLGVVALEPDALSIRGLHNYAKYLKQSGQ----ESSRYQLNMWSKIFAPVSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + GI GF+ Y + I + + P+ A++P + + +S
Sbjct: 291 VSFIFGPLRSVSAGSRIVIGISFGFLFYLLNEIFRPLSLVYGIPPILGAILPSSVFLCIS 350
Query: 352 ILILLQK 358
+ +LL++
Sbjct: 351 VALLLKR 357
>gi|269140437|ref|YP_003297138.1| hypothetical protein ETAE_3096 [Edwardsiella tarda EIB202]
gi|267986098|gb|ACY85927.1| hypothetical protein ETAE_3096 [Edwardsiella tarda EIB202]
gi|304560230|gb|ADM42894.1| Putative inner membrane protein [Edwardsiella tarda FL6-60]
Length = 356
Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats.
Identities = 75/365 (20%), Positives = 148/365 (40%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + T + L + L +I + ++G+ +YS++ + +P
Sbjct: 1 MFGVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GDYSVAGAGLFTLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGMLAQRSELVVMQAAGFTRMQVASAVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A G++ + Q G + W + + F+ +++ + +
Sbjct: 120 EWVAPQGDQAARNYRAQQMYGGSLLSTQGGLWAK----DGNQFVYIAQVVNDRT-LGGVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIK 233
T++ + K+ + A A + KL +V E + S TL+ P K
Sbjct: 175 IYTLNAQRKLTSLRYAASATFDGKQWKLAQVEESNLTDPKMITGSRTLSGVWKTNLTPDK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + Y +K + S + + R + + I PL + M L+A S
Sbjct: 235 LGVVAVSPDSLSISGLYHYVKYLKQSGQ----ESSRYQLNLWSKIFAPLSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + V GI GF+ Y + I + PV A++P L + LS+
Sbjct: 291 FIFGPLRSVPMGVRVLTGICFGFVFYVLDQIFGPMSLVYNVPPVIGAVLPSALFLGLSVY 350
Query: 354 ILLQK 358
+LL++
Sbjct: 351 LLLRR 355
>gi|227114630|ref|ZP_03828286.1| putative permease [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
gi|227327172|ref|ZP_03831196.1| putative permease [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 358
Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats.
Identities = 76/367 (20%), Positives = 143/367 (38%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + ++G+ YS + VP
Sbjct: 1 MFGVLDRYIGKTIFTTIMTTLFMLVSLSGIIKFVDQLRKVGQ-GEYSALGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ GE++ + Q G + W + N FI +++ +
Sbjct: 120 EWVSPQGEQMARNYRSQMISGGSMISTQGGLWAKDGND----FIYIERVTGD-KELSGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
D KNK++ + A A +D+ KL +V E S T + P
Sbjct: 175 IYHFDDKNKLLSVRYAASAEFEDDRNVWKLSQVDESDLSDGKQIGGSQTFSGEWKTNLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + + R + K + S + + R + + I P+ + M L+A
Sbjct: 235 DKLGVVALEPDALSIRGLHNYAKYLKQSGQ----ESNRYQLNMWSKIFAPVSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + GI GF+ Y + I + + P+ A++P + + +S
Sbjct: 291 VSFIFGPLRSVSAGSRIVIGISFGFLFYLLNEIFRPLSLVYGIPPILGAILPSSVFLFIS 350
Query: 352 ILILLQK 358
+ +LL++
Sbjct: 351 VALLLKR 357
>gi|114768925|ref|ZP_01446551.1| permease, YjgP/YjgQ family protein [alpha proteobacterium HTCC2255]
gi|114549842|gb|EAU52723.1| permease, YjgP/YjgQ family protein [alpha proteobacterium HTCC2255]
Length = 366
Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats.
Identities = 72/370 (19%), Positives = 155/370 (41%), Gaps = 17/370 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L YF K YL + + L ++LV + D N++ + I +L+ R +
Sbjct: 2 TLAIYFGKRYLISFIRVFLSIVLLVLLFDFLTNLNRLNGI-EAQIWNALILSLLRTTTYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P I ++ + +L+R++E ++ RA G+S + L P + + LG+ ++ +++P+
Sbjct: 61 SLAMPLIIMLSALAFSVSLSRSNEFIVLRASGVSALKGLFPVISSAFFLGLISIFMLDPL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A + + + Q +D WM+ + I A + T
Sbjct: 121 AGKMIGYYNIKLDKLRSKEQSQVLINDNGYWMRQATLNGHQIIKAVNVSNNGQRLHQVTI 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY---QYGRIPIDKNST-------TLNIP 231
D+ + R ++ A + N+++ L +++ + + PI N T P
Sbjct: 181 FNYDENGLVTERFFSESAALGNNELLLTNAIKWSDTKIKKNPIIANEKIKKLKIKTEITP 240
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
++ E + + + I+K+ KS+ F + +++ P + + M ++
Sbjct: 241 TQLLDGYASPETISPWNMNKQIQKV----KSSGFSVLKYQSKKMEQYARPFLFIVMVVLG 296
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+L+ SR+ I V + SGF L+ + G+SG + + A P++ ++
Sbjct: 297 TVFTLQNSRARNVGISVVLAVASGFFLHFFQNFCTTLGRSGEIPLIIATWSPILSIGLIA 356
Query: 352 ILILLQKEDG 361
+ + L EDG
Sbjct: 357 MTLFLHYEDG 366
>gi|50119364|ref|YP_048531.1| putative permease [Pectobacterium atrosepticum SCRI1043]
gi|49609890|emb|CAG73325.1| putative permease [Pectobacterium atrosepticum SCRI1043]
Length = 358
Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats.
Identities = 75/367 (20%), Positives = 145/367 (39%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + ++G+ YS + VP
Sbjct: 1 MFGVLDRYIGKTIFTTIMTTLFMLVSLSGIIKFVDQLRKVGQ-GEYSALGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ GE++ + Q G + W + + FI +++ + +
Sbjct: 120 EWVSPQGEQMARNYRSQMISGGSMISTQGGLWAK----DGNNFIFIERVTGD-KELSGVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
D +NK++ + A A +D+ KL +V E S TL+ P
Sbjct: 175 IYRFDDQNKLLSVRYAASAEFEDDRNVWKLSQVDESDLSDGKQIGGSQTLSGEWKTNLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + + R + K + S + + R + + I P+ + M L+A
Sbjct: 235 DKLGVVALEPDALSIRGLHNYAKYLKQSGQ----ESNRYQLNMWSKIFAPVSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + GI GF+ Y + I + + P+ A++P + + +S
Sbjct: 291 VSFIFGPLRSVSAGSRIVIGISFGFLFYLLNEIFRPLSLVYGIPPILGAILPSSVFLFIS 350
Query: 352 ILILLQK 358
+ +LL++
Sbjct: 351 VALLLKR 357
>gi|307129164|ref|YP_003881180.1| hypothetical protein Dda3937_01300 [Dickeya dadantii 3937]
gi|306526693|gb|ADM96623.1| conserved inner membrane protein [Dickeya dadantii 3937]
Length = 356
Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats.
Identities = 79/365 (21%), Positives = 145/365 (39%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY K T + L + L +I + ++G+ YS+ + VP
Sbjct: 1 MFRVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GGYSVMGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLATRSELVVMQASGFTRLQIAAAVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +GE++ + Q G + W + N F+ +++ EN
Sbjct: 120 EWMAPAGEQMARNYRSQMMYGGSMLSTQGGLWAKDGND----FVYIQRVAGEN-ELAGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-------GRIPIDKNSTTLNIPIK 233
DK++K++ + A A+ N KL +V E G + T P K
Sbjct: 175 IYHFDKQSKLLSIRYAASALYENGTWKLSQVEESDLRDSKQIGGSQTVSGEWKTNLTPDK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + R ++ I + S + R + + + PL + M L+A S
Sbjct: 235 LGVVALDPDALSIRGLFDYINYLHQSGQ----EASRYQLNMWSKLFAPLSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + + GI GF+ Y + I + PV A +P L + +SI+
Sbjct: 291 FIFGPLRSVPAGVRIVIGISFGFLFYVLDQIFGPLSLVYHIPPVLGASLPSALFLFISIM 350
Query: 354 ILLQK 358
+LL++
Sbjct: 351 LLLKR 355
>gi|238897462|ref|YP_002923139.1| putative permease [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465217|gb|ACQ66991.1| putative permease [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 367
Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats.
Identities = 77/363 (21%), Positives = 143/363 (39%), Gaps = 17/363 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
GIL RY + L T + L + L +I E ++GE NYS+ A+ VP
Sbjct: 3 FGILDRYIGRSILNTIIMTLFMLVSLSGIIKFIEQLRKVGE-GNYSVFAAAIYTLLSVPN 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I P L+ I+ L SELV+ +A G S Q++ + +I+L + ++++
Sbjct: 62 DIMIFFPMAALIGGILGLGALATRSELVVVQASGFSHMQIVLSVMKTAIILFLLSIIIGE 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A ++ + G + W + + FI +++ +H
Sbjct: 122 WLAPLADQTASHYRTKMIYGGSVISTQSGIWAKDKSD----FIYINQVI-NHHELSGVHI 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIKM 234
D +++I + A AI +L ++ E + S TL+ P K+
Sbjct: 177 YHFDAHDRLISIRYAATAIFEKGAWQLSQIDESNLSDTKKIQGSQTLSEKWETSLTPYKL 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + Y+ +K + + + R E + + I P + M L++ S
Sbjct: 237 GIVAMDPDSLSIMGLYDYVKYLKQVGQ----DSDRYELKMWQKIFSPFSITVMILLSLSF 292
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS + + GI GF+ Y + I P+ A +P +L S+S+ +
Sbjct: 293 IFGPLRSTATGLRIVTGICFGFVFYLLDKIFGPLSLLYQFSPILGAALPSVLFFSISLYL 352
Query: 355 LLQ 357
LL+
Sbjct: 353 LLK 355
>gi|268592782|ref|ZP_06127003.1| membrane protein, YjgP/YjgQ family [Providencia rettgeri DSM 1131]
gi|291311563|gb|EFE52016.1| membrane protein, YjgP/YjgQ family [Providencia rettgeri DSM 1131]
Length = 358
Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats.
Identities = 78/367 (21%), Positives = 141/367 (38%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L + L L + L +I E ++G+ +Y+ V VP
Sbjct: 1 MFGVLDRYIGRTILNSILVTLFLLVSLAGIIKFVEQLRKVGD-GDYTALSAGVFTLLTVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L SELV+ +A G + Q+ + ++ L I + +
Sbjct: 60 KDIDIFFPMAALLGALMGLGALASRSELVVMQASGFTRLQIALSVMKTAVPLVIVAMFIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA +GE+ + + +D W + +N FI ++I I +D +
Sbjct: 120 EWIAPAGEQWARNYRAEKIVGNSLVVTDEGMWAKDAND----FIHIQRINNATSI-QDVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
D + K+ A N L +V E S L P
Sbjct: 175 IYRFDDQRKLKSVMFAANGEYDSTNQLWVLSQVDESILSSEKKITGSQRLTVDWKTNLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ ++ + R Y+ + + S + E + I+ PL M L+A
Sbjct: 235 EKLGIVSLNADSLSIRGLYQYVSYLKESGQVAAV----YELSMWKKILAPLSAAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S R+ + V GI GF+ Y + ++ + P+ AA +P +L + +S
Sbjct: 291 VSFIFGPLRTVPMGVRVISGIVGGFLFYVLNQGFGNWSLVYSVPPIIAAALPSVLFLIVS 350
Query: 352 ILILLQK 358
I +L+++
Sbjct: 351 ITLLVKR 357
>gi|253702061|ref|YP_003023250.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
gi|251776911|gb|ACT19492.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
Length = 360
Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats.
Identities = 74/363 (20%), Positives = 145/363 (39%), Gaps = 23/363 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + YLK L + + V+D E ++ S A+ T++P +I
Sbjct: 3 ILTRYIARAYLKMLSLCLGSFLTIYLVVDFMEKVSRF-TRAGASWKHLALFFITKIPEMI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ L+ TSEL R+ G+S++++ P +V S+L+ + + + +
Sbjct: 62 IDAAPLAVLMATLLTLGTLSLTSELTAIRSCGVSLFRISLPILVISVLMSLGVLAIGEFV 121
Query: 124 ATSGEK----IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
I LIQ+ + ++ +I W + + A P + +
Sbjct: 122 LPKSFAQRTYIQEVLIQKKSASAFFRQQNI--WFREEG----TVLRASLFEPARNELKGI 175
Query: 180 TSITIDKK-NKIIHRKDADLAIIYNDKVKLKKVVEYQY--GRIPIDKNSTTLNI-----P 231
T + + + R +ADLA++ L+ V Q+ G + + L + P
Sbjct: 176 TLWDLQPGTGEPLKRTEADLALLGPKGWVLRDAVVRQFRDGEVSATQKYRELPVQLQLKP 235
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ K+S+ + +K+ +++ + R TQ + I +P M +
Sbjct: 236 ADLKTLGKYSDSMSLVELNRYCRKL----RASGYDPTRYVTQMHSRISMPFGCAVMAFLG 291
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+L RS+ V I GF+ + +++ S G+ G+L PV AA +
Sbjct: 292 IPFALRGGRSSGIAFGVGLSIGVGFLYVIVNSVIISVGQVGLLPPVVAAWATNFIFFVAG 351
Query: 352 ILI 354
+
Sbjct: 352 AWL 354
>gi|312170935|emb|CBX79194.1| beta-lactamase/D-alanine carboxypeptidase ampH [Erwinia amylovora
ATCC BAA-2158]
Length = 358
Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats.
Identities = 76/367 (20%), Positives = 140/367 (38%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + + G+ Y++ + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIMATLFMLVSLSGIIKFVDQLRKTGQ-GEYTVLGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + D FI +++ +N +
Sbjct: 120 EFVAPQGEQMARNYRAQQLMGGSLLSTQSGLWAK----DGDNFIFIERVRDDNQ-LSGIS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
D + ++ + A A DK +L +V + + TL+ P
Sbjct: 175 IYHFDPQRRLKTVRYAASAKYNADKKLWELAQVDQSDLSDTQQINGNQTLSGEWKTSLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + Y K + S + R + + I PL + M L+A
Sbjct: 235 DKLGVVSLDPGALSISGLYSYSKYLKQSGQMAG----RYQLNMWSKIFQPLSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + V GI GF+ Y + I + P+ AL+P +LS
Sbjct: 291 LSFIFGPLRSVSMGMRVVTGISFGFLFYVLDQIFGPLSLVYNIPPILGALLPSAAFFALS 350
Query: 352 ILILLQK 358
+ +L+++
Sbjct: 351 VAMLVKR 357
>gi|238921309|ref|YP_002934824.1| hypothetical protein NT01EI_3453 [Edwardsiella ictaluri 93-146]
gi|238870878|gb|ACR70589.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 356
Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats.
Identities = 76/365 (20%), Positives = 148/365 (40%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + T + L + L +I + ++G+ +YS++ + VP
Sbjct: 1 MFGVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQ-GDYSVAGAGLFTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGMLAQRSELVVMQAAGFTRMQVASAVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A G++ + Q G + W + + F+ +++ + +
Sbjct: 120 EWVAPQGDQAARNYRAQQMYGGSLLSTQGGLWAK----DGNQFVYISQVVNDRT-LGGVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIK 233
T+D + K+ + A A + KL +V E + S TL+ P K
Sbjct: 175 IYTLDAQRKLTSLRYAASATFDGKQWKLAQVEESNLSDPKMITGSRTLSGVWKTNLTPDK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + Y +K + S + + R + + + PL + M L+A S
Sbjct: 235 LGVVAVSPDSLSISGLYYYVKYLKQSGQ----ESSRYQLNLWIKVFAPLSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + V GI GF+ Y + I + PV A++P L + LS+
Sbjct: 291 FIFGPLRSVPMGVRVLTGICFGFVFYVLDQIFGPMSLVYNVPPVIGAVLPSALFLGLSVY 350
Query: 354 ILLQK 358
+LL++
Sbjct: 351 LLLRR 355
>gi|300718540|ref|YP_003743343.1| permease [Erwinia billingiae Eb661]
gi|299064376|emb|CAX61496.1| putative permease [Erwinia billingiae Eb661]
Length = 358
Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats.
Identities = 76/367 (20%), Positives = 142/367 (38%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + + G+ Y+ + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIMATLFMLVSLSGIIKFVDQLRKTGQ-GEYTALGAGLYTVLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + D FI ++I +N +
Sbjct: 120 EFVAPQGEQMARNYRAQQLVGGSLLSTQNGLWAK----DGDNFIFIEQI-KDNSELSGIS 174
Query: 181 SITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
+ +K+ ++ + A A + L +V + S TL+ P
Sbjct: 175 IYSFNKERRLETVRYAASAKYNVDKKRWDLAEVDQSNLTDPKQVTGSQTLSGEWKTTLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + + Y +K + S + + R + + I PL + M L+A
Sbjct: 235 DKLGVVALDPDALSISGLYNYVKYLKQSGQVS----SRYQLNMWSKIFQPLSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + V GI GF+ Y + I + P+ AL+P ++S
Sbjct: 291 LSFIFGPLRSVSMGMRVVTGISFGFIFYVLDQIFGPLSLVYNIPPIMGALLPSGAFFAIS 350
Query: 352 ILILLQK 358
+ +LL++
Sbjct: 351 VYMLLKR 357
>gi|260886292|ref|ZP_05897555.1| membrane protein, YjgP/YjgQ family [Selenomonas sputigena ATCC
35185]
gi|330839725|ref|YP_004414305.1| permease YjgP/YjgQ family protein [Selenomonas sputigena ATCC
35185]
gi|260864011|gb|EEX78511.1| membrane protein, YjgP/YjgQ family [Selenomonas sputigena ATCC
35185]
gi|329747489|gb|AEC00846.1| permease YjgP/YjgQ family protein [Selenomonas sputigena ATCC
35185]
Length = 363
Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats.
Identities = 61/360 (16%), Positives = 141/360 (39%), Gaps = 14/360 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L +Y F+ + + G + Q S + +P I
Sbjct: 5 LLDKYIFREVCLAFFFGICGTSAVFVGSGTLFRIAQYITEYGASFGSVVKMFIFSLPAIA 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ F L+ +SE+ ++ G+S +++ P +V +++ IF++L I
Sbjct: 65 IYTFPMSMLLAALLTFGRLSSSSEITAMKSCGVSFYRIAAPVIVLGVVVSIFSILFTEHI 124
Query: 124 ATSGEKIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
++I + + N + D I +I + + + A++ E T
Sbjct: 125 VPRANNAYENVIAYEIQGNAAPKSQDHIVIKEIKDGEMQRLMYARRYDAATETLEGVTLQ 184
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY----GRIPIDKNSTTLNI---PIKMD 235
+ ++ + + +DA A + + + Y+ + + L I P ++
Sbjct: 185 SF-EQGETKYVQDAAYAKWEGTQWTMYRGAIYEVSGGKSEHTMRFDKQVLPINAGPGRIV 243
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
QK E+ + + I+ M ++ + ET+ Y I IP+ + +I +
Sbjct: 244 REQKKPEELTMKELRQQIELM----RTQFVDTKKLETELYQRITIPMASLVFAIIGVPLG 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ +RS+ + + F Y ++T+ + G+SG L P A +P + + + ++
Sbjct: 300 IQPTRSSSS-RGIGLSLLIFFCYYVLMTLAGALGQSGALNPAYAVWLPNVAGLLIGAYLM 358
>gi|292486866|ref|YP_003529736.1| beta-lactamase/D-alanine carboxypeptidase ampH [Erwinia amylovora
CFBP1430]
gi|292900737|ref|YP_003540106.1| permease [Erwinia amylovora ATCC 49946]
gi|291200585|emb|CBJ47716.1| putative permease [Erwinia amylovora ATCC 49946]
gi|291552283|emb|CBA19320.1| beta-lactamase/D-alanine carboxypeptidase ampH [Erwinia amylovora
CFBP1430]
Length = 358
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 76/367 (20%), Positives = 140/367 (38%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + + G+ Y++ + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIMATLFMLVSLSGIIKFVDQLRKTGQ-GEYTVLGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + D FI +++ +N +
Sbjct: 120 EFVAPQGEQMARNYRAQQLMGGSLLSTQSGLWAK----DGDNFIFIERMRDDNQ-LSGIS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
D + ++ + A A DK +L +V + + TL+ P
Sbjct: 175 IYHFDPQRRLKTVRYAASAKYNADKKLWELAQVDQSDLSDTQQINGNQTLSGEWKTSLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + Y K + S + R + + I PL + M L+A
Sbjct: 235 DKLGVVSLDPGALSISGLYSYSKYLKQSGQMAG----RYQLNMWSKIFQPLSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + V GI GF+ Y + I + P+ AL+P +LS
Sbjct: 291 LSFIFGPLRSVSMGMRVVTGISFGFLFYVLDQIFGPLSLVYNIPPILGALLPSAAFFALS 350
Query: 352 ILILLQK 358
+ +L+++
Sbjct: 351 VAMLVKR 357
>gi|310766280|gb|ADP11230.1| Inner membrane protein [Erwinia sp. Ejp617]
Length = 358
Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats.
Identities = 78/367 (21%), Positives = 141/367 (38%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + + G+ Y++ + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIMATLFMLVSLSGIIKFVDQLRKTGQ-GEYTVLGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGALAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + D FI ++I +N +
Sbjct: 120 EFVAPQGEQMARNYRAQQLMGGSLLSTQSGLWAK----DGDNFIFIERIRDDNQ-LSGIS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
D + ++ + A A DK +L +V + K S TL+ P
Sbjct: 175 IYNFDHERRLKTVRYAASAKYNADKKLWELAQVDQSDLSDAQQIKGSQTLSGEWNTTLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + Y K + S + R + + I PL + M L+A
Sbjct: 235 DKLGVVALDPGALSISGLYSYSKYLKQSGQMAG----RYQLNMWSKIFQPLSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + V GI GF+ Y + I + P+ AL+P ++S
Sbjct: 291 LSFIFGPLRSVSMGMRVVTGISFGFLFYVLDQIFGPLSLVYNIPPILGALLPSAAFFAIS 350
Query: 352 ILILLQK 358
+ +L+++
Sbjct: 351 LAMLVKR 357
>gi|197119770|ref|YP_002140197.1| membrane protein [Geobacter bemidjiensis Bem]
gi|197089130|gb|ACH40401.1| membrane protein, YjgQ-related protein [Geobacter bemidjiensis Bem]
Length = 360
Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats.
Identities = 74/364 (20%), Positives = 144/364 (39%), Gaps = 23/364 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY + Y+K L + + V+D E ++ S A+ T++P +
Sbjct: 2 NILTRYIARAYVKMLSLCLGSFIAIYLVVDFMEKVSRFTRY-GASWKHLALFFITKIPEM 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I P L+ ++ L+ TSEL R+ G+S++++ P +V S+L+ + + +
Sbjct: 61 IIDAAPLAVLMATLLTLGTLSLTSELTAIRSCGVSLFRISLPILVISVLMSLGVLAIGEF 120
Query: 123 IATSGEK----IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ I LIQ+ + ++ +I W + + A P + +
Sbjct: 121 VLPKTYAQRTYIQEVLIQKKSPSAFFRQQNI--WFREEG----TVLRASLFEPARNELKG 174
Query: 179 FTSITIDKK-NKIIHRKDADLAIIYNDKVKLKKVVEYQY--GRIPIDKNSTTLNI----- 230
T + + + R +ADLAI+ + V Q+ G + + L +
Sbjct: 175 ITLWELQPGTGEPLKRTEADLAILGAKGWMFRDAVVRQFRDGEVSSTQKYRELPVELQLK 234
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P + KFS+ + +K+ +++ + R TQ + I +P M +
Sbjct: 235 PADLKTLGKFSDSMSLVELSRYCRKL----RASGYDPTRYVTQMHSRISMPFGCAVMAFL 290
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+L RS+ V I GF+ + +++ S G+ G+L PV AA +
Sbjct: 291 GIPFALRGGRSSGIAFGVGLSIGVGFLYVIVNSVIISVGQVGLLPPVVAAWATNFIFFVA 350
Query: 351 SILI 354
+
Sbjct: 351 GAWL 354
>gi|297537469|ref|YP_003673238.1| permease [Methylotenera sp. 301]
gi|297256816|gb|ADI28661.1| permease YjgP/YjgQ family protein [Methylotenera sp. 301]
Length = 356
Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats.
Identities = 69/363 (19%), Positives = 146/363 (40%), Gaps = 16/363 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL +Y K + L +L + + DL + + +G+ +Y + + + P
Sbjct: 2 KILNKYLLKEIVSNVLMVMLALIAMFSFFDLIQELDALGK-GSYGLGKILLFVLLSAPGH 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++P LV + L R SELV+ R G+SI+ + + + I T L+
Sbjct: 61 VYDVMPVAVLVGCMYSLGQLARYSELVVLRVSGLSIFDIAVLLLKIGAIFTIITFLIGEL 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ EK + + D+ Q+ W++ + FI +++LP+ + +
Sbjct: 121 VTPFSEKTAQRMRIKATDSVVAQEFRSGLWVK----DGNSFINVEEVLPDATLL-NIHIF 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST------TLNIPIKMDG 236
DK K+I ++A ++ KLK V + + + + + + +L P ++
Sbjct: 176 DFDKNAKLISTRNAKAGEFKHESWKLKDVTDTSFDKDSVKVSQSLEATWHSLIRPELLNV 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E+ ++ + Y I +S + + R E + ++ PL + M ++A
Sbjct: 236 LLIMPEKMSAWNLYTYINHLSINKQK----TTRYEVALWAKMIYPLACMVMVVLALPFGF 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R+ + GI G M + + G P+ +A++P I+ + + +L
Sbjct: 292 VQQRAAGASTKIFVGIMLGVMYQILNRVFAHLGLLNDWPPLFSAIMPTIMFLMAGVAMLF 351
Query: 357 QKE 359
E
Sbjct: 352 YVE 354
>gi|149186432|ref|ZP_01864745.1| predicted permease [Erythrobacter sp. SD-21]
gi|148830021|gb|EDL48459.1| predicted permease [Erythrobacter sp. SD-21]
Length = 365
Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats.
Identities = 61/361 (16%), Positives = 141/361 (39%), Gaps = 9/361 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY K ++ L L+ ++++ ++DL ++ + A+ RVP +I
Sbjct: 10 TLTRYLAKLFVVRILAVLVMLVLVLMMLDLLSNSGKILAVEGNGQGELLKYASLRVPQLI 69
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+ +P+ L+ ++ LN+ SE++ +A G+S Q+L P ++ ++++G + + +
Sbjct: 70 QRFLPYSVLLATLISLVTLNQNSEVIAMKAAGLSAHQVLAPLLLTALVVGGVSFVFNERV 129
Query: 124 AT-SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDFT 180
T + + W ++ ++ + A ++ D T
Sbjct: 130 VTRATATLKAWDAADWGPVPEESSVRANVYL----ADGSNVLTAAQLTGSGDAIRMRDVT 185
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQK 239
+ I+ + DA A +L+ + ++ +S + + D
Sbjct: 186 WYRRSPEGTIVEQVDAARATYAGPGWRLENIERFEVAAAASSTGDSLVVGEGLTPDQIDL 245
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ F+E+ +++ + +++ + PL M L+ A + +
Sbjct: 246 AKIDPDAVPFWELGERIDAFEDAGRR-TGEMRAKWWHKLSGPLSSFLMPLLGAVAAFGLA 304
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
RS Q + G+ GF + + + G G P+ AA P L + +L++ E
Sbjct: 305 RSGQLFVRALIGMALGFAYFVVDNAALAMGNFGGYPPLLAAWAPFFLFALIGETVLIRTE 364
Query: 360 D 360
+
Sbjct: 365 E 365
>gi|304413751|ref|ZP_07395195.1| inner membrane component LptG of LptABCFG lipopolysaccharide
transporter [Candidatus Regiella insecticola LSR1]
gi|304283842|gb|EFL92236.1| inner membrane component LptG of LptABCFG lipopolysaccharide
transporter [Candidatus Regiella insecticola LSR1]
Length = 358
Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats.
Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L T L L + L +I E ++GE +YS+ + VP
Sbjct: 3 MFGVLDRYIGRNILHTILMTLFMLVSLSGIIKFIEQLRKLGE-GSYSVLGAGIYTLLSVP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ + L SEL++ +A G + Q+ + + +I L + T+++
Sbjct: 62 KDIEIFFPMAALLGVLFGLGTLASRSELIVMQASGFTRTQIASAVMKTAIPLVLLTMVIG 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E+I D + G + W + + F+ IL +N
Sbjct: 122 EWVAPLSERIASDYRTKMIFGGAILTTQSGLWAR----DGENFLYINHILNDNT-LSGVN 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIK 233
ID++N+++ + A A ++ +L +V E S TL P K
Sbjct: 177 IYHIDQENRLLSVRYAATATFKDNVWQLSQVDESDLSDAKKINGSKTLTGEWKINLTPDK 236
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + I+ + + + ++ R + + I PL + M L+A S
Sbjct: 237 LGIVSVDPDSLPISGLRDYIQYLKQNKQESL----RYQLIMWNKIFSPLSVAVMMLVALS 292
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R+ + V GI GF+ Y + I + PV AL+P +L + +S
Sbjct: 293 FIFGPLRTVTMGVRVMVGIAVGFLFYVLNQIFGPVSLVYKMPPVIGALLPSLLFLLVSWY 352
Query: 354 ILLQK 358
+LL++
Sbjct: 353 LLLKR 357
>gi|317046772|ref|YP_004114420.1| permease YjgP/YjgQ family protein [Pantoea sp. At-9b]
gi|316948389|gb|ADU67864.1| permease YjgP/YjgQ family protein [Pantoea sp. At-9b]
Length = 358
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 76/367 (20%), Positives = 142/367 (38%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY K T + L + L +I + + G+ Y+ VP
Sbjct: 1 MFKVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKTGQ-GAYTALDAGYYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGNLAQRSELVVMQASGFTRMQVALAVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + + FI ++I +N I + +
Sbjct: 120 EFVAPQGEQMARNYRAQQLYGGALVSTQNGLWAK----DGNSFIYIERIKGDNQI-DGVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
++ +++ + A A N K L +V E S +L+ P
Sbjct: 175 IYNFSEQRRLLSVRYAATATWDNAKKLWVLSQVDESDLKDAKQITGSQSLSGEWKTNLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + + R Y K + S + R + + I PL + M L+A
Sbjct: 235 DKLGVVALDPDALSIRGLYNYSKYLKQSGQEAG----RYQLNMWSKIFQPLSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + V GI GF+ Y + I + P+ A++P ++S
Sbjct: 291 LSFIFGPLRSVSMGVRVVTGISFGFLFYVLDQIFGPLSLVYGIPPILGAVLPSAAFFAIS 350
Query: 352 ILILLQK 358
+ ++L++
Sbjct: 351 LFLMLKR 357
>gi|259907067|ref|YP_002647423.1| Inner membrane protein [Erwinia pyrifoliae Ep1/96]
gi|224962689|emb|CAX54144.1| Inner membrane protein [Erwinia pyrifoliae Ep1/96]
gi|283476867|emb|CAY72716.1| beta-lactamase/D-alanine carboxypeptidase ampH [Erwinia pyrifoliae
DSM 12163]
Length = 358
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 77/367 (20%), Positives = 141/367 (38%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + + G+ Y++ + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIMATLFMLVSLSGIIKFVDQLRKTGQ-GEYTVLGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGALAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + D FI ++I + + +
Sbjct: 120 EFVAPQGEQMARNYRAQQLMGGSLLSTQSGLWAK----DGDNFIFIERIR-DGNQLSGIS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
D + ++ + A A DK +L +V + K S TL+ P
Sbjct: 175 IYNFDHERRLKTVRYAASAKYNADKKLWELAQVDQSDLSDAQQIKGSQTLSGEWNTTLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + Y K + S + R + + I PL + M L+A
Sbjct: 235 DKLGVVALDPGALSISGLYSYSKYLKQSGQMAG----RYQLNMWSKIFQPLSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + V GI GF+ Y + I + P+ AL+P ++S
Sbjct: 291 LSFIFGPLRSVSMGMRVVTGISFGFLFYVLDQIFGPLSLVYNIPPILGALLPSAAFFAIS 350
Query: 352 ILILLQK 358
+ +L+++
Sbjct: 351 LAMLVKR 357
>gi|293393092|ref|ZP_06637407.1| YjgP/YjgQ family membrane protein [Serratia odorifera DSM 4582]
gi|291424238|gb|EFE97452.1| YjgP/YjgQ family membrane protein [Serratia odorifera DSM 4582]
Length = 356
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 75/365 (20%), Positives = 139/365 (38%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + ++G+ YS + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIIMTLFMLVSLSGIIKFVDQLRKVGQ-GEYSALGAGMYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDVEIFFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + N FI +++ EN
Sbjct: 120 EWVAPQGEQMARNYRAQQMYGGSLLSTKNGLWAKDGND----FIYIERVAGEN-ELSGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIK 233
+ + ++ + A A + +L +V + TL P K
Sbjct: 175 IYHFNDRRRLETVRYAATATFEDGAWQLSQVDTSDLTNEKQVTGTQTLTGVWKTNLTPDK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + + +K + S + R + + I PL + M L+A S
Sbjct: 235 LGVVALDPDSLSISGLHNYVKYLKQSGQ----EASRYQLNMWSKIFSPLSVAVMMLMALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + V GI GF+ Y + I + PV AL+P +L + +S+
Sbjct: 291 FIFGPLRSVPMGMRVVTGISFGFLFYVMDQIFGPLSLVYNMPPVLGALLPSLLFLLISVY 350
Query: 354 ILLQK 358
+LL++
Sbjct: 351 LLLKR 355
>gi|269103491|ref|ZP_06156188.1| putative membrane protein [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268163389|gb|EEZ41885.1| putative membrane protein [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 356
Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats.
Identities = 78/365 (21%), Positives = 137/365 (37%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E ++G+ Y + + VP
Sbjct: 1 MFKILDWYIGRTIIGTTALTLSTLVGLSAIIKYVEQLRKVGQ-GTYDLWNALIFVLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + +L+
Sbjct: 60 RDIEMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSTLKTAVPLMLMVMLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K DL W G+ W + N FI ++ + +
Sbjct: 120 QWGAPQAQKAARDLRTFWTSGGNMLSVQSGVWAKDGND----FIYIARVHEQ-KELDGIN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNST------TLNIPIK 233
+ KNK+ A+ A +K LK V + I I + T P K
Sbjct: 175 IWEFNGKNKLTQSVFAEKAQYNAEKGWSLKYVTVTDFAPIEIKETKYPTLDWQTTLTPDK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ E+ + Y ++ + S + R E F+ + P+ + M L+A S
Sbjct: 235 LAIVTVKPEELSLSGVYNYVQYLKESKQ----DASRYELAFWRKALQPVSIAVMMLLALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS V G+ GF Y + + L PV AL P ++ ++++I
Sbjct: 291 FVFGPLRSVTMGARVLSGVIFGFAFYISNEVFGPMSQVYRLPPVIGALAPSMVFLAITIY 350
Query: 354 ILLQK 358
+L +K
Sbjct: 351 LLKRK 355
>gi|304437499|ref|ZP_07397457.1| permease YjgP/YjgQ family protein [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304369549|gb|EFM23216.1| permease YjgP/YjgQ family protein [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 376
Score = 225 bits (575), Expect = 6e-57, Method: Composition-based stats.
Identities = 62/362 (17%), Positives = 140/362 (38%), Gaps = 13/362 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y F+ + L+ + + Q S+ + +P ++
Sbjct: 17 ILDKYIFREVFLSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPGVV 76
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ F L+ +SE+ ++ GI ++ P ++ L+ + +L +
Sbjct: 77 MWTFPMSMLLASLLTFGRLSSSSEITAMKSCGIGFGRIAAPAILLGFLVSVGAILFNEHV 136
Query: 124 ATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
++I + + N + + + +I Q + A+ E +
Sbjct: 137 VPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEIEGGQIKRLVYARSYNAEQQQLTGVSLQ 196
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNI---PIKMD 235
K+ H ++A+ A + + K Y +++ + L + P ++
Sbjct: 197 IFGADGKVSHVENAEYAEWTGSEWIMHKGDVYDIADEHLERRMRFETQVLPVEKDPRQII 256
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
QK E+ R I M ++ + + E + Y + +P+ + TLI +
Sbjct: 257 REQKSPEEMTMRELRHQIALM----QTQYVNTSKLEAELYQRVSVPMASLIFTLIGVPLG 312
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L+ +R N A + F+ Y ++T+ +F + +L P+ A IP I+ I I++L
Sbjct: 313 LQPTR-NSSSAGFAMSVIIIFIYYALMTMGNAFARGEVLPPMLAVWIPNIVGIIAGIILL 371
Query: 356 LQ 357
+
Sbjct: 372 RR 373
>gi|238927586|ref|ZP_04659346.1| permease YjgP/YjgQ family protein [Selenomonas flueggei ATCC 43531]
gi|238884511|gb|EEQ48149.1| permease YjgP/YjgQ family protein [Selenomonas flueggei ATCC 43531]
Length = 379
Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats.
Identities = 60/362 (16%), Positives = 139/362 (38%), Gaps = 13/362 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y F+ + L+ + + Q S+ + +P ++
Sbjct: 20 ILDKYIFREVFLSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPGVV 79
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ F L+ +SE+ ++ GI ++ P ++ ++ + VL +
Sbjct: 80 MWTFPMSMLLASLLTFGRLSSSSEITAMKSCGIGFGRIAAPAILLGFVVSVGAVLFNEHV 139
Query: 124 ATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
++I + + N + + + +I Q + A+ E +
Sbjct: 140 VPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEIEGGQIKRLVYARSYDAEQQHLTGVSLQ 199
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNI---PIKMD 235
K+ H ++A+ A + + + Y +++ + L + P ++
Sbjct: 200 IFGADGKVSHVENAEYAEWTGSEWIMHQGDVYDIADEHLERRMHFETQVLPVEKNPRQII 259
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
QK E+ R I M ++ + + E + Y + +P+ + TLI +
Sbjct: 260 REQKAPEEMTMRELRHQITLM----QTQYVNTNKLEAELYQRVSVPMASLIFTLIGVPLG 315
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L+ +R N A + F+ Y ++T+ + + G+L P+ A IP I+ I ++L
Sbjct: 316 LQPTR-NSSSAGFAMSVIIIFIYYALMTMGNALARGGVLPPMFAVWIPNIVGIFAGGILL 374
Query: 356 LQ 357
+
Sbjct: 375 RR 376
>gi|255658902|ref|ZP_05404311.1| permease, YjgP/YjgQ family [Mitsuokella multacida DSM 20544]
gi|260848851|gb|EEX68858.1| permease, YjgP/YjgQ family [Mitsuokella multacida DSM 20544]
Length = 364
Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats.
Identities = 62/362 (17%), Positives = 140/362 (38%), Gaps = 13/362 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y F+ K ++ + + + S+S + +P +I
Sbjct: 5 ILDKYIFREVFKAFIFGICAFSAVFIGSGTLFKIAKYITDYGASLSAVIKVFVFGLPSVI 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ F L+ +SE+ ++ GI +++ P V+ L+ I + +
Sbjct: 65 MWTFPMSMLLATLLTFGRLSSSSEITAMKSCGIGFYRIAAPAVIMGFLVSIGAIAFNEYV 124
Query: 124 ATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+++ + + N + + I I + + + A++ + + T
Sbjct: 125 VPWANTAYRNVVYYEIQGNNGMKSQEHIILKDIQDGKIQRLVYARRYDGDTQTLQGVTMQ 184
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI----PIDKNSTTLNI---PIKMD 235
++ K+ H ++A+ A DK + + Y + ++ L I P ++
Sbjct: 185 DFNQDGKVSHVENAEYAEYSMDKWIMHNGMLYDISEGQSEHSMRFDTQVLPIKANPKQIV 244
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
QK E+ + I M K+ + E + Y I +P+ + LI +
Sbjct: 245 REQKDPEELTMKELRAQINIM----KTQYVDTNKLEAELYQRITVPMASLIFALIGVPLG 300
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L+ +R N A + F Y ++T+ + +SG + P+ A IP I+ + +++
Sbjct: 301 LQPTR-NSSSAGFAMSVIIIFFYYALMTMGNALARSGAVAPIIAVWIPNIVGLIAGFILI 359
Query: 356 LQ 357
+
Sbjct: 360 RR 361
>gi|304396397|ref|ZP_07378278.1| permease YjgP/YjgQ family protein [Pantoea sp. aB]
gi|304355906|gb|EFM20272.1| permease YjgP/YjgQ family protein [Pantoea sp. aB]
Length = 358
Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats.
Identities = 78/367 (21%), Positives = 142/367 (38%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY K T + L + L +I + + G+ +YS VP
Sbjct: 1 MFRVLDRYIGKTIFNTIMLTLFMLVSLSGIIKFVDQLRKTGQ-GSYSALSAGYYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGALAQRSELVVMQAAGFTRMQVALSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A SGE++ + Q G + W + + FI ++I +N I + +
Sbjct: 120 EFVAPSGEQMARNYRAQQLYGGALVSTQNGLWAK----DGNSFIYIERIKGDNEI-DGVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
+ + ++ + A A DK L +V E S +L+ P
Sbjct: 175 IYNFNDQRRLQSVRYAATATWDKDKKRWLLSQVDESNLTDPKQITGSQSLSGEWKTNLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + + R + K + S + R E + I PL + M L+A
Sbjct: 235 DKLGVVALDPDALSIRGLHSYSKYLKQSGQEAG----RYELNMWSKIFQPLSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + V GI GF+ Y + I L P+ A++P ++S
Sbjct: 291 LSFIFGPLRSVSMGVRVVTGISFGFLFYVLDQIFGPLSLVYGLPPILGAILPSFAFFAIS 350
Query: 352 ILILLQK 358
+ +L+++
Sbjct: 351 MFMLIKR 357
>gi|291616052|ref|YP_003518794.1| YjgQ [Pantoea ananatis LMG 20103]
gi|291151082|gb|ADD75666.1| YjgQ [Pantoea ananatis LMG 20103]
Length = 378
Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats.
Identities = 75/367 (20%), Positives = 137/367 (37%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY K T L L + L +I + + G+ YS VP
Sbjct: 21 MFRVLDRYIGKTIFNTILMTLFMLVSLSGIIKFVDQLRKTGQ-GAYSALDAGYYTLLSVP 79
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 80 KDIEIFFPMAALLGALLGLGTLAQRSELVVMQAAGFTRMQVALSVMKTAIPLVLLTMAIG 139
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + + FI +++ ++ I + +
Sbjct: 140 EFVAPQGEQMARNFRAQQLYGGALVSTQSGLWAK----DGNNFIYIERVKGDDEI-DGVS 194
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
++ + A A DK L +V E S +L P
Sbjct: 195 IYNFTDDRRLQSVRYAATAKWNKDKKLWVLSQVDESNLTDPKQITGSQSLTGEWKTSLTP 254
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + + Y+ K + S + + R + I PL + M L+A
Sbjct: 255 DKLGVVALDPDALSITGLYDYSKYLKQSGQESG----RYRLNMWSKIFQPLSVAVMMLMA 310
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + V GI GF+ Y + I L P+ A++P ++S
Sbjct: 311 LSFIFGPLRSVSMGVRVVTGISFGFLFYVLDQIFGPLSLVYGLPPIFGAILPSFAFFAIS 370
Query: 352 ILILLQK 358
+ +L+++
Sbjct: 371 LFMLIKR 377
>gi|109899861|ref|YP_663116.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
gi|109702142|gb|ABG42062.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
Length = 353
Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats.
Identities = 70/363 (19%), Positives = 143/363 (39%), Gaps = 16/363 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + L TT L + L +I E +G +Y ++ AV +P
Sbjct: 1 MIKILDWYIARTLLSTTAMSLGVLVGLSALIKFIEQMKSVGR-GSYDMTVAAVYVFLSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++Q P TL+ ++ L SELV+ ++ G S W ++ + +IL+ +F +++
Sbjct: 60 RELEQFFPMATLIGGLIGMGILASNSELVVMQSAGQSRWNIIISAMKSAILMVLFVMVIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E ++ Q G SD + W + D F+ +++ + D +
Sbjct: 120 EWVAPVSETKAKEIRTQAISGGSLFSSDRLVWAK----DGDNFVSIGEVV-DKDTLRDVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG------RIPIDKNSTTLNIPIKM 234
D + + A+ A + +L V ++ + D + P K+
Sbjct: 175 IYEFDNELYLRQITTAESATYQDKTWELSHVQSTEFSDNRIQVQDAADGAWASSLTPDKL 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
E + R + + + +++ ++ R + ++ P+ + M L+A S
Sbjct: 235 GVVTVKPEALSIRGLIDYVNYLENNSQ----NSERYRLALWRKVLQPISVGVMLLMALSF 290
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS V G+ +GF + + S + P A++P ++ +SI +
Sbjct: 291 IFGPLRSVTMGARVIMGVLTGFGFFVSNEVFGSLSTVYHIPPFIGAILPSVVFTGISIHL 350
Query: 355 LLQ 357
L +
Sbjct: 351 LRR 353
>gi|327396303|dbj|BAK13725.1| inner membrane protein YjgQ [Pantoea ananatis AJ13355]
Length = 358
Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 75/367 (20%), Positives = 137/367 (37%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY K T L L + L +I + + G+ YS VP
Sbjct: 1 MFRVLDRYIGKTIFNTILMTLFMLVSLSGIIKFVDQLRKTGQ-GAYSALDAGYYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGTLAQRSELVVMQAAGFTRMQVALSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + + FI +++ ++ I + +
Sbjct: 120 EFVAPQGEQMARNFRAQQLYGGALVSTQSGLWAK----DGNNFIYIERVKGDDEI-DGVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
++ + A A DK L +V E S +L P
Sbjct: 175 IYNFTDDRRLQSVRYAATAKWNKDKKLWVLSQVDESNLTDPKQITGSQSLTGEWKTSLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + + Y+ K + S + + R + I PL + M L+A
Sbjct: 235 DKLGVVALDPDALSITGLYDYSKYLKQSGQESG----RYRLNMWSKIFQPLSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + V GI GF+ Y + I L P+ A++P ++S
Sbjct: 291 LSFIFGPLRSVSMGVRVVTGISFGFLFYVLDQIFGPLSLVYGLPPIFGAILPSFAFFAIS 350
Query: 352 ILILLQK 358
+ +L+++
Sbjct: 351 LFMLIKR 357
>gi|260771006|ref|ZP_05879935.1| putative membrane protein [Vibrio furnissii CIP 102972]
gi|260614243|gb|EEX39433.1| putative membrane protein [Vibrio furnissii CIP 102972]
gi|315179054|gb|ADT85968.1| hypothetical permease, YjgP/YjgQ family [Vibrio furnissii NCTC
11218]
Length = 356
Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats.
Identities = 76/367 (20%), Positives = 135/367 (36%), Gaps = 21/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT+ L + L +I E ++G+ Y + + + +P
Sbjct: 1 MFKILDWYIGRTIIATTMLVLATFVGLSGIIKYVEQLRKVGD-GTYDLMQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L I L+
Sbjct: 60 RDIEMFFPMAALLGALIGLGALAASSELVVMQAAGFSKLDIGLSVLKTAVPLMIIITLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K DL G W + N FI KI +++
Sbjct: 120 EWGAPQAQKAARDLRAFATSGGKILSVRTGVWARDIND----FIFIGKI--DDNRLYGMN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKVVEYQY--------GRIPIDKNSTTLNIP 231
D+ ++ H A + + +K V +P + T+L P
Sbjct: 174 MWRFDEHKQLRHVIFAKQVDYLGGNSWVMKDVEVTDMNDDVVITKQSLPEYRWETSL-AP 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ A Y+ + + S + R E F+ I P + M L+A
Sbjct: 233 DKLAVVTVKPEELALSGLYDYVHYLKASEQ----DASRYELAFWRKITQPFSIAVMMLMA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y + PV A+ P I+ +S++
Sbjct: 289 LSFIFGPLRSVTMGARILSGVIAGFTFYISSEFFGPLSLVYGIPPVFGAVAPSIVFLSIA 348
Query: 352 ILILLQK 358
+L+L +K
Sbjct: 349 LLLLRRK 355
>gi|91774576|ref|YP_544332.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
gi|91708563|gb|ABE48491.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
Length = 356
Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats.
Identities = 67/363 (18%), Positives = 141/363 (38%), Gaps = 16/363 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + + + + +L + + DL + +G+ NY IS+ + P
Sbjct: 2 KLLNRYLAQEIVSSIMLIMLALLAMFSFFDLIQELESLGK-GNYGISKVLLYVLLSAPGH 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +++P LV + +R SEL+I R GISI ++ + ++ + T LV
Sbjct: 61 VYEVVPVAVLVGTMYALGQFSRYSELIILRVSGISIRKIAFSLLRVGLVFAVITFLVGEL 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA EK + Q D+ Q W++ + F+ + ++P+ D
Sbjct: 121 IAPMSEKAAQRIRIQATDSVVAQDFRSGLWVK----DGNSFVNVQNVMPDAS-LMDIHIY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI------PIKMDG 236
D + ++ +A + L +V + + I N P ++
Sbjct: 176 EFDNEFRLRTISNAKEGSFDGNSWNLHQVTQTHFEEQKIRTNVFQEATWQSLIRPELLNV 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E+ ++ + Y I ++ + + R + + ++ PL + M ++A
Sbjct: 236 LLVVPEKMSAWNLYFYINHLASNKQK----TSRHQIALWSKMIYPLACLVMVILALPFGF 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS+ + GI G + + + G P+ +A++P +L ++ I +L
Sbjct: 292 LQQRSSSASTKIFSGIMLGIVYQVLNRVFVHLGLLNDWSPLFSAVMPTLLFMAAGIFMLY 351
Query: 357 QKE 359
E
Sbjct: 352 WVE 354
>gi|204927347|ref|ZP_03218549.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|204324012|gb|EDZ09207.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
Length = 360
Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats.
Identities = 72/366 (19%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELAGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
+ + ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNDQRRLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + PV AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPVVGALLPSASFFLISL 353
Query: 353 LILLQK 358
++L+K
Sbjct: 354 WLMLRK 359
>gi|161505032|ref|YP_001572144.1| hypothetical protein SARI_03163 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160866379|gb|ABX23002.1| hypothetical protein SARI_03163 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 360
Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats.
Identities = 71/366 (19%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELAGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
+ + ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNDQRRLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTDLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISL 353
Query: 353 LILLQK 358
++L+K
Sbjct: 354 WLMLRK 359
>gi|16767725|ref|NP_463340.1| permease [Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|56416251|ref|YP_153326.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|161617774|ref|YP_001591739.1| hypothetical protein SPAB_05637 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167551264|ref|ZP_02345019.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|167991269|ref|ZP_02572368.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168232820|ref|ZP_02657878.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168234610|ref|ZP_02659668.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|168244031|ref|ZP_02668963.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168262477|ref|ZP_02684450.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168464638|ref|ZP_02698541.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168821095|ref|ZP_02833095.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194446562|ref|YP_002043719.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194449673|ref|YP_002048503.1| hypothetical protein SeHA_C4884 [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194470492|ref|ZP_03076476.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194738007|ref|YP_002117400.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197249048|ref|YP_002149399.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197262055|ref|ZP_03162129.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197365174|ref|YP_002144811.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|198242808|ref|YP_002218343.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200388381|ref|ZP_03214993.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205355211|ref|YP_002229012.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207859605|ref|YP_002246256.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|238910635|ref|ZP_04654472.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|16423045|gb|AAL23299.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|56130508|gb|AAV80014.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|161367138|gb|ABX70906.1| hypothetical protein SPAB_05637 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194405225|gb|ACF65447.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194407977|gb|ACF68196.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194456856|gb|EDX45695.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194713509|gb|ACF92730.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195632823|gb|EDX51277.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197096651|emb|CAR62266.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197212751|gb|ACH50148.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197240310|gb|EDY22930.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197292043|gb|EDY31393.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|197937324|gb|ACH74657.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199605479|gb|EDZ04024.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205274992|emb|CAR40066.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205323911|gb|EDZ11750.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205330351|gb|EDZ17115.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205333019|gb|EDZ19783.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205337021|gb|EDZ23785.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205342262|gb|EDZ29026.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205348818|gb|EDZ35449.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206711408|emb|CAR35787.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|261249568|emb|CBG27435.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267996824|gb|ACY91709.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301160964|emb|CBW20498.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312915576|dbj|BAJ39550.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|322615643|gb|EFY12563.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618703|gb|EFY15592.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322621884|gb|EFY18734.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322627609|gb|EFY24400.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322630915|gb|EFY27679.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322637866|gb|EFY34567.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322642324|gb|EFY38930.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322643901|gb|EFY40449.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322651023|gb|EFY47408.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322656724|gb|EFY53012.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659852|gb|EFY56095.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322661937|gb|EFY58153.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322666315|gb|EFY62493.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322672734|gb|EFY68845.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322676164|gb|EFY72235.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322680648|gb|EFY76686.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684458|gb|EFY80462.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323132817|gb|ADX20247.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
gi|323194205|gb|EFZ79402.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323197350|gb|EFZ82490.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323201532|gb|EFZ86596.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323206046|gb|EFZ91008.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323213057|gb|EFZ97859.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323215428|gb|EGA00172.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323219412|gb|EGA03897.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323227716|gb|EGA11870.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323228886|gb|EGA13015.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323236502|gb|EGA20578.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323239997|gb|EGA24044.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323241956|gb|EGA25985.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323247895|gb|EGA31832.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323251467|gb|EGA35338.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323258167|gb|EGA41844.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323263687|gb|EGA47208.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323265717|gb|EGA49213.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323270161|gb|EGA53609.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|326626151|gb|EGE32496.1| putative permease [Salmonella enterica subsp. enterica serovar
Dublin str. 3246]
gi|326630369|gb|EGE36712.1| putative permease [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
gi|332991289|gb|AEF10272.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 360
Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats.
Identities = 71/366 (19%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELAGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
+ + ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNDQRRLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISL 353
Query: 353 LILLQK 358
++L+K
Sbjct: 354 WLMLRK 359
>gi|188532529|ref|YP_001906326.1| Inner membrane protein [Erwinia tasmaniensis Et1/99]
gi|188027571|emb|CAO95418.1| Inner membrane protein [Erwinia tasmaniensis Et1/99]
Length = 358
Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats.
Identities = 78/367 (21%), Positives = 139/367 (37%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + + G+ Y++ + VP
Sbjct: 1 MFGVLDRYIGKTIFNTIMATLFMLVSLSGIIKFVDQLRKTGQ-GEYTVLGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGALAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + D F+ ++I + +
Sbjct: 120 EFVAPQGEQMARNFRAQQLVGGSLLSTQSGLWAK----DGDNFVFIERIRDD-SQLSGIS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
+ D ++ + A A DK +L +V + K S TL+ P
Sbjct: 175 IYSFDHDRRLQTVRYAASAKYNADKKLWELAQVDQSDLTDAQQIKGSQTLSGEWKTTLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + Y K + S + R + + I PL + M L+A
Sbjct: 235 DKLGVVALDPGALSISGLYSYSKYLQQSGQMAG----RYQLNMWSKIFQPLSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + V GI GF+ Y + I + PV AL+P LS
Sbjct: 291 LSFIFGPLRSVSMGMRVITGISFGFLFYVLDQIFGPLSLVYNIPPVLGALLPSAAFFVLS 350
Query: 352 ILILLQK 358
+ +L+++
Sbjct: 351 VAMLIKR 357
>gi|261819787|ref|YP_003257893.1| permease YjgP/YjgQ family protein [Pectobacterium wasabiae WPP163]
gi|261603800|gb|ACX86286.1| permease YjgP/YjgQ family protein [Pectobacterium wasabiae WPP163]
Length = 358
Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats.
Identities = 76/367 (20%), Positives = 143/367 (38%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY K T + L + L +I + ++G+ YS + VP
Sbjct: 1 MFGVLDRYIGKTIFTTIITTLFMLVSLSGIIKFVDQLRKVGQ-GEYSALGAGLYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIETFFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ GE++ + Q G + W + N FI ++I+ +
Sbjct: 120 EWVSPQGEQMARNYRSQMISGGSMISTQGGLWAKDGND----FIYIERIVGD-KELSGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
D++NK++ + A A D+ L +V E S TL+ P
Sbjct: 175 IYHFDEQNKLLSVRYAASAEFDKDRNVWNLSQVDESDLSDGKQIGGSQTLSGEWKTNLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + R ++ K + S + + R + + I P+ + M L+A
Sbjct: 235 DKLGVVALEPNALSIRGLHDYAKYLKQSGQESG----RYQLNMWSKIFAPVSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + GI GF Y + I + + P+ A++P + + +S
Sbjct: 291 VSFIFGPLRSVSAGSRIVIGISFGFFFYLLNEIFRPLSLVYGIPPILGAVLPSSVFLFIS 350
Query: 352 ILILLQK 358
+ +LL++
Sbjct: 351 VALLLKR 357
>gi|62182906|ref|YP_219323.1| putative permease [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|62130539|gb|AAX68242.1| putative permease [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|322717409|gb|EFZ08980.1| putative permease [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
Length = 360
Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats.
Identities = 71/366 (19%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAISLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELAGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
+ + ++ + A A + +L +V E S T++ P
Sbjct: 178 YVFNDQRRLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISL 353
Query: 353 LILLQK 358
++L+K
Sbjct: 354 WLMLRK 359
>gi|149907703|ref|ZP_01896450.1| hypothetical protein PE36_07437 [Moritella sp. PE36]
gi|149809373|gb|EDM69302.1| hypothetical protein PE36_07437 [Moritella sp. PE36]
Length = 355
Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats.
Identities = 69/361 (19%), Positives = 123/361 (34%), Gaps = 16/361 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y K L T+ L + L VI E +G Y + + ++P
Sbjct: 1 MIKILDIYIGKAILFATMICLFTLVGLSAVIKYVEQLRAVGR-GTYGLLEALMYVMLKMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L +SELV+ +A G S ++++ + +I + I +L+
Sbjct: 60 REITIFFPMAALLGALIGLGALASSSELVVIQAAGQSRFKIVLSTMKTAIPMMIIVMLMG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E+ L + ++ W + + FI K+ D T
Sbjct: 120 EYVAPYTEQKAAQLRGEATSGQSIIRAQKGVWAKDK----ENFINIGKVN-NGSELHDVT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN------IPIKM 234
+++ A A +L + + R I P K+
Sbjct: 175 IYEFAGNQRLVKTTQARRATYTGKYWQLTDLRITHFERDSISVTEQATQRWDSTLTPEKL 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D E + Y I + + + E F+ I PL + M L+A S
Sbjct: 235 DVVTIDPEDLSISGLYSYITYLDSNKQ----DAGSYELAFWRKIFQPLSIGVMVLLALSF 290
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R+ + G+ +GF Y L P A++P + ++I+
Sbjct: 291 VFGPLRTVTMGARILMGVVAGFTFYLASETFGPISLVYSLPPFLGAVVPSAIFTLIAIVQ 350
Query: 355 L 355
L
Sbjct: 351 L 351
>gi|292669943|ref|ZP_06603369.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292648414|gb|EFF66386.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 366
Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats.
Identities = 60/363 (16%), Positives = 138/363 (38%), Gaps = 14/363 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y F+ + L+ + + Q S+ + +P ++
Sbjct: 7 ILDKYIFREVFSSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPGVV 66
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ F L+ SE+ ++ GI ++ P ++ ++ + + +
Sbjct: 67 MWTFPMAMLLASLLTFGRLSSASEITAMKSCGIGFGRIAAPAILLGFIVSVGAIFFNEHV 126
Query: 124 ATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
++I + + N + + + +I Q + A+ E +
Sbjct: 127 VPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEIEEGQIRRLVYARSYDAEQERLTGISLQ 186
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNI---PIKMD 235
K+ H ++A+ A + + Y +++ + L + P ++
Sbjct: 187 VFGDDGKVTHVENAEYAEWTGTEWIMHNGDVYDIADEHLERRMRFETQVLPVQKDPRQII 246
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
QK E+ R I M ++ + + E + Y + +P+ + TLI +
Sbjct: 247 REQKVPEEMTMRELRHQIALM----QTQYVNTSKLEAELYQRVSVPMASLIFTLIGVPLG 302
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L+ +R N A + F Y ++T+ +F + +L P+ A IP I+ I ++ IL
Sbjct: 303 LQPTR-NSSSAGFAMSVIIIFFYYALMTMGNAFARGEVLPPMLAVWIPNIVGI-IAGTIL 360
Query: 356 LQK 358
L++
Sbjct: 361 LRR 363
>gi|224586303|ref|YP_002640102.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|224470831|gb|ACN48661.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
Length = 360
Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats.
Identities = 72/366 (19%), Positives = 138/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELAGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
+ + ++ + A A + +L +V E S T++ P
Sbjct: 178 YVFNDQRRLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ S+ + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDSDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISL 353
Query: 353 LILLQK 358
++L+K
Sbjct: 354 WLMLRK 359
>gi|332290236|ref|YP_004421088.1| putative permease YjgP/YjgQ family [Gallibacterium anatis UMN179]
gi|330433132|gb|AEC18191.1| putative permease YjgP/YjgQ family [Gallibacterium anatis UMN179]
Length = 356
Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats.
Identities = 67/364 (18%), Positives = 127/364 (34%), Gaps = 16/364 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L T L + L +I E +GE NY ++ +P
Sbjct: 1 MFNTLDRYIGKTILATIFVVLFLLVGLSAIIKFVEQFRAIGE-GNYDTAKAIAYTLLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ +L SELV+ +A G S +Q+ + +I L I + +
Sbjct: 60 KDIETFFPMAALLGALIGLGSLASNSELVVMQASGFSRFQIGLSVMKVAIPLIILNMALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ ++ + G W + + F+ + I P+ +
Sbjct: 120 EWGIPQTEQFAREMRYKSLTGGSLLSVKGSVWAK----DGNSFVYIQHI-PKENQLNGIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST------TLNIPIKM 234
D+ + A+ A N++ + ++ E + I T P K+
Sbjct: 175 IYQFDQNRNLQKMSQANRATYANNEWRFNQISESELNGDHITNKKYLNKVWQTSITPDKL 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + I+ + + + E ++ ++ P+ + M L+A S
Sbjct: 235 GMVSLRPSMLSITGLSDYIQFLKNTGQ----DTKTFELTYWRKLLQPISISVMMLLALSF 290
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS + V GI GF Y + + + P AL P I ++ +
Sbjct: 291 IFGPLRSVTSGVRVIIGICCGFAFYVLDQVFGPLSLVYNIPPFIGALAPSIFFAAIIWWL 350
Query: 355 LLQK 358
+ K
Sbjct: 351 MAHK 354
>gi|289649165|ref|ZP_06480508.1| hypothetical protein Psyrpa2_15669 [Pseudomonas syringae pv.
aesculi str. 2250]
Length = 353
Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 128/360 (35%), Gaps = 19/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L L L + LV + + + + Y+++ P +
Sbjct: 4 LDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISD--TYTLADALSYVMLTAPRRVY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ L +SEL I RA G+SI +++ + +LL + VLV +A
Sbjct: 62 DTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + +GD Q + W + + FI + P + T
Sbjct: 122 PYAENQAQAARSLAQGSGDAQSARHGLWHRQGDE----FIHINTVQPNGLML-GVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNSTTLNIPIKMDGF 237
D + ++ A A D +LK V + P+++ L+ P +
Sbjct: 177 DDQRHMLTSSFAKEANFKTDYWELKDVSTTHFNDGRTEVINTPVERWDVALS-PQLLSTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + ++ SN R F+ ++ P + VA+ L+A S
Sbjct: 236 IMPPESLSISGLWNYAHYLADQGLSNG----RYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF I ++ P+ A L+P + +L +
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLMPAAACALAGVYLLRR 351
>gi|332307891|ref|YP_004435742.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175220|gb|AEE24474.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 353
Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats.
Identities = 72/363 (19%), Positives = 144/363 (39%), Gaps = 16/363 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + L TT L + L +I E +G +Y ++ AV +P
Sbjct: 1 MIKILDWYIARTLLSTTAMSLGVLVGLSALIKFIEQMKSVGR-GSYDMTVAAVYVFLSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++Q P TL+ ++ L SELV+ ++ G S W ++ + +IL+ +F +++
Sbjct: 60 RELEQFFPMATLIGGLIGMGILASNSELVVMQSAGQSRWNIIISAMKSAILMVLFVMVIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E ++ Q G SD + W + D F+ +++ + + D +
Sbjct: 120 EWVAPISETKAKEIRTQAISGGSLFSSDRLVWAK----DGDNFVSIGEVV-DKNNLRDVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG------RIPIDKNSTTLNIPIKM 234
D + A+ A +D +L V ++ D ++ P K+
Sbjct: 175 IYEFDNDLYLRKITTAEAANYQSDSWELSHVQSTEFSDNRIHVEDAADGAWSSSLTPDKL 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
E + R + + + +++ ++ R + ++ P+ + M L+A S
Sbjct: 235 GVVTVKPEALSIRGLIDYVNYLENNSQ----NSERYRLALWRKVLQPISVGVMLLMALSF 290
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS V G+ +GF + + S + P A++P I+ +SI +
Sbjct: 291 IFGPLRSVTMGARVIMGVLTGFGFFVSNEVFGSLSTVYHIPPFIGAILPSIVFTGISIHL 350
Query: 355 LLQ 357
L +
Sbjct: 351 LRR 353
>gi|283834897|ref|ZP_06354638.1| membrane protein, YjgP/YjgQ family [Citrobacter youngae ATCC 29220]
gi|291069157|gb|EFE07266.1| membrane protein, YjgP/YjgQ family [Citrobacter youngae ATCC 29220]
Length = 360
Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats.
Identities = 70/366 (19%), Positives = 138/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + P
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDAMGAGLYTLLSAPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + D F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQQMYGGSLLSTQQGLWAK----DGDSFVYIERV-KGDAELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
+ + K ++ + A A ++ +L +V E S T++ P
Sbjct: 178 YSFNDKRRLQSVRYAASATFDPEQKIWRLSQVDESNLQDPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + + PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKVFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
++L+K
Sbjct: 354 WLMLRK 359
>gi|261342655|ref|ZP_05970513.1| membrane protein, YjgP/YjgQ family [Enterobacter cancerogenus ATCC
35316]
gi|288315303|gb|EFC54241.1| membrane protein, YjgP/YjgQ family [Enterobacter cancerogenus ATCC
35316]
Length = 360
Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats.
Identities = 68/366 (18%), Positives = 139/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY + T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGRTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDAMGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ ++ +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDD-ELGGVSI 177
Query: 182 ITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
+ + ++ + A A + + +L +V E + T+ P
Sbjct: 178 YAFNNERRLQSVRHASSAKFDAEHKQWRLSQVDESNLTDPKQITGTQTVTGTWKTDLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P + +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFLLISL 353
Query: 353 LILLQK 358
+LL++
Sbjct: 354 WMLLRR 359
>gi|16763280|ref|NP_458897.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|29144759|ref|NP_808101.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|213162831|ref|ZP_03348541.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213427634|ref|ZP_03360384.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213618568|ref|ZP_03372394.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213650367|ref|ZP_03380420.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|289824527|ref|ZP_06544086.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25513067|pir||AG1061 probable inner membrane protein STY4818 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16505588|emb|CAD06940.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29140398|gb|AAO71961.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 360
Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats.
Identities = 71/366 (19%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELAGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
+ + ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNDQRRLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQFNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISL 353
Query: 353 LILLQK 358
++L+K
Sbjct: 354 WLMLRK 359
>gi|289623814|ref|ZP_06456768.1| hypothetical protein PsyrpaN_01505 [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|298485820|ref|ZP_07003898.1| putative membrane protein [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|298159644|gb|EFI00687.1| putative membrane protein [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|330867847|gb|EGH02556.1| hypothetical protein PSYAE_11466 [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330890524|gb|EGH23185.1| hypothetical protein PSYMO_17663 [Pseudomonas syringae pv. mori
str. 301020]
gi|330989712|gb|EGH87815.1| hypothetical protein PLA107_32131 [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331009019|gb|EGH89075.1| hypothetical protein PSYTB_04820 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 353
Score = 222 bits (565), Expect = 9e-56, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 128/360 (35%), Gaps = 19/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L L L + LV + + + + Y+++ P +
Sbjct: 4 LDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISD--TYTLADALSYVMLTAPRRVY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ L +SEL I RA G+SI +++ + +LL + VLV +A
Sbjct: 62 DTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + +GD Q + W + + FI + P + T
Sbjct: 122 PYAENQAQAARSLAQGSGDAQSARHGLWHRQGDE----FIHINTVQPNGLML-GVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNSTTLNIPIKMDGF 237
D + ++ A A D +LK V + P+++ L+ P +
Sbjct: 177 DDQRHMLTSSFAKEANFKTDYWELKDVSTTHFNDGRTEVINTPVERWDVALS-PQLLSTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + ++ SN R F+ ++ P + VA+ L+A S
Sbjct: 236 IMPPESLSISGLWNYAHYLADQGLSNG----RYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF I ++ P+ A L+P + +L +
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLMPAAACALAGVYLLRR 351
>gi|332142604|ref|YP_004428342.1| lipopolysaccharide ABC transporter permease [Alteromonas macleodii
str. 'Deep ecotype']
gi|327552626|gb|AEA99344.1| lipopolysaccharide ABC transporter permease [Alteromonas macleodii
str. 'Deep ecotype']
Length = 353
Score = 222 bits (565), Expect = 9e-56, Method: Composition-based stats.
Identities = 68/363 (18%), Positives = 138/363 (38%), Gaps = 16/363 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + L T L + L +I E ++GE +Y + + +P
Sbjct: 1 MFKILDLYIARTLLSTITVTLSVLIGLSALIKFVEQLRKIGE-GDYDMLAAFIYVLLSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++Q P TL+ ++ L SELV+ +A G+S W ++N + ++++ + + V
Sbjct: 60 RDLEQFFPMATLLGGLIGMGVLASNSELVVMQAAGMSRWNIINSAMKSTLVMILAVMAVG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ E L + G SD + W + D F+ +++ ++ +D +
Sbjct: 120 EWVTPFSETKAKQLRTEAISGGSLFSSDKLVWAK----DGDRFVSIGQVISQDS-LKDVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST------TLNIPIKM 234
+ + A + D L V Q+ + + T + P K+
Sbjct: 175 IFNFNSDLSLQSITYAKNSTYDGDGWWLSNVEVTQFTETQVSVDDTDRMRWNSTLTPDKL 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
E + + + + +++ R E + I P+ + M L+A S
Sbjct: 235 GIVAVKPEALSITGLLDYVNYLDNNDQ----DPSRYELALWRKIFQPISVGVMLLMALSF 290
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS V G+ +GF + + + L P AL+P +L +++ ++
Sbjct: 291 IFGPLRSVTMGARVIMGVLTGFGFFILNEVFGPVSLVYQLPPFLGALLPSLLFAAVAGVM 350
Query: 355 LLQ 357
L +
Sbjct: 351 LRR 353
>gi|90411865|ref|ZP_01219873.1| putative permease [Photobacterium profundum 3TCK]
gi|90327123|gb|EAS43495.1| putative permease [Photobacterium profundum 3TCK]
Length = 356
Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats.
Identities = 67/365 (18%), Positives = 131/365 (35%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E ++G+ Y + + + +P
Sbjct: 1 MFKILDWYIGRTIIATTALTLSTLVGLSAIIKYVEQLRKIGD-GTYDLWKALIYVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + +++
Sbjct: 60 RDIEMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMVLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K +L W G+ W + N FI ++ +
Sbjct: 120 QWGAPQAQKSARELRAIWTSGGNMLSVQSGVWAKDGND----FIYIGRVHEQ-STLNAVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEY---QYGRIPIDKNSTTLNIPIKMDG 236
D ++ + A A +++ L V + + ++ + D
Sbjct: 175 IWQFDDEDTLSKMVFAKSASFTDEQGWLLADVTVTNISKIQQTNTKFDTLPWKTSLSPDK 234
Query: 237 ---FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
E+ A Y+ + + S + R E F+ ++ P+ + M L+A S
Sbjct: 235 LAIVTVKPEELALSGVYDYVSYLKESKQ----DASRYELAFWRKLLQPISIAVMMLLALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS V G+ GF Y + L P AL P ++ + ++I
Sbjct: 291 FVFGPLRSVTMGARVLSGVIFGFTFYISNEVFGPMSLVYRLHPAIGALGPSLVFLLITIY 350
Query: 354 ILLQK 358
+L +K
Sbjct: 351 LLRRK 355
>gi|237729200|ref|ZP_04559681.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226908929|gb|EEH94847.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 360
Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats.
Identities = 70/366 (19%), Positives = 138/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + P
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDAMGAGLYTLLSAPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + D F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQQMYGGSLLSTQQGLWAK----DGDSFVYIERV-KGDAELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
+ + K ++ + A A ++ +L +V E S T++ P
Sbjct: 178 YSFNDKRRLQSVRYAASATFDPEQKVWRLSQVDESNLTDPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + + PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKVFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
++L+K
Sbjct: 354 WLMLRK 359
>gi|253997950|ref|YP_003050013.1| permease [Methylovorus sp. SIP3-4]
gi|253984629|gb|ACT49486.1| permease YjgP/YjgQ family protein [Methylovorus sp. SIP3-4]
Length = 356
Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats.
Identities = 64/363 (17%), Positives = 135/363 (37%), Gaps = 16/363 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + + + + ++ + + DL + +G+ Y +++ + P
Sbjct: 2 KLLNRYLTQEIVSSIMLIMVALLAMFSFFDLIQELESIGK-GTYGLNKVLMFVLLSAPGH 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +++P LV + L+R SEL+I R GISI + + ++ + T V
Sbjct: 61 VYEVVPVAVLVGTMYALGQLSRHSELIILRVSGISIATIARSLLKVGLIFAVITFFVGEF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ EK L Q D+ Q W++ F+ ++++P+ +
Sbjct: 121 VTPYSEKTAQRLRIQATDSVVAQDFRSGLWVK----DGRSFVNVEEVMPD-SELMNIHIY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN------STTLNIPIKMDG 236
D + DA + LK V + + + +L P ++
Sbjct: 176 EFDDTFHLRTISDAKTGRFDGENWHLKDVQQTHFLDKTVKSEFFPQAQWQSLIRPELLNV 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E+ ++ + Y I +S + + R E + +V PL + M ++A
Sbjct: 236 LLVVPEKMSAWNLYFYIHHLSANKQK----TSRHEIALWSKMVYPLASLVMVVLALPFGF 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + GI G + + + G P+ +A++P +L + + +L
Sbjct: 292 LQQRSGGASAKIFAGIMLGIVYQVLNRVFVHLGLLNDWSPLMSAVVPTLLFLLAGLTMLF 351
Query: 357 QKE 359
E
Sbjct: 352 MAE 354
>gi|308189158|ref|YP_003933289.1| Inner membrane protein yjgQ [Pantoea vagans C9-1]
gi|308059668|gb|ADO11840.1| Inner membrane protein yjgQ [Pantoea vagans C9-1]
Length = 358
Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats.
Identities = 75/367 (20%), Positives = 142/367 (38%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY K T + L + L +I + + G+ +YS VP
Sbjct: 1 MFRVLDRYIGKTIFNTIMLTLFMLVSLSGIIKFVDQLRKTGQ-GSYSALSAGYYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 60 KDIEIFFPMAALLGALLGLGALAQRSELVVMQAAGFTRMQVALSVMKTAIPLVLLTMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A SGE++ + Q G + W + + FI ++I +N I + +
Sbjct: 120 EFVAPSGEQMARNYRAQQLYGGALVSTQNGLWAK----DGNNFIYIERIKGDNEI-DGVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
+ + ++ + A A + L +V E + S +L+ P
Sbjct: 175 IYNFNDQRRLQSVRYAATATWDAAKKRWMLSQVDESNLTDPKLITGSQSLSGEWKTNLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + + R + K + S + R + + I PL + M L+A
Sbjct: 235 DKLGVVALDPDALSIRGLHSYSKYLKQSGQEAG----RYQLNMWSKIFQPLSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + V GI GF+ Y + I L P+ A++P ++S
Sbjct: 291 LSFIFGPLRSVSMGVRVVTGISFGFLFYVLDQIFGPLSLVYGLPPILGAILPSFAFFAIS 350
Query: 352 ILILLQK 358
+ +L+++
Sbjct: 351 MFMLIKR 357
>gi|254468723|ref|ZP_05082129.1| permease YjgP/YjgQ [beta proteobacterium KB13]
gi|207087533|gb|EDZ64816.1| permease YjgP/YjgQ [beta proteobacterium KB13]
Length = 355
Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats.
Identities = 71/362 (19%), Positives = 139/362 (38%), Gaps = 18/362 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y + +G + L D + + Y +S+ V +P +
Sbjct: 3 LAKYINFEFFINISLVAIGLVFLFAFFDFLQEIGNL-NSGKYDLSKIIVFITLSMPGHLY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+IIP L+ + L+ SELV+ R G+SI Q+ + ++ S+ G+ T +V N I
Sbjct: 62 EIIPLSCLIGAMFTVGQLSGNSELVVMRTSGMSILQIASSLIIVSLFFGVLTFMVGNLIT 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
EK + D WM+ + F+ + +LP+ +
Sbjct: 122 PVSEKNAQQIKISSTDGSVTTDFKSGVWMK----DGNNFVNIENVLPDAS-LRNIHIYEF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVE-------YQYGRIPIDKNSTTLNIPIKMDGF 237
D + DA+ N +L+K+ + + +P + + P M+
Sbjct: 177 DNDFSLRSIVDAEKGRYENGIWELEKIKQSFILDEGFDVKTLPSGTWKSMIK-PEMMNVL 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + + I + +N+ R E F+ I+ P+M + M L A
Sbjct: 236 LISPDRMSIFDLNDFINYLKKNNQK----TSRYEVSFWEKIIQPVMPIIMILFAVPFGFF 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + + GI G + + ++M+ G P+ A+IP I+ + ++I ++
Sbjct: 292 QERSGGKYLKMFLGIIFGIIYQIMNSMMRHIGVLNDWEPIITAIIPSIVILGIAIYLMFY 351
Query: 358 KE 359
E
Sbjct: 352 FE 353
>gi|85859085|ref|YP_461287.1| permease [Syntrophus aciditrophicus SB]
gi|85722176|gb|ABC77119.1| permease [Syntrophus aciditrophicus SB]
Length = 359
Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats.
Identities = 73/340 (21%), Positives = 139/340 (40%), Gaps = 14/340 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + +L+ L +L + L ++D E + + + R+P+++
Sbjct: 3 ILDRYISREFLRFFLLVILSFLSLFLIVDFFEKLKMLINYS-ATFYQILAFFFFRIPMML 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IP L+ +++ F +L++ SE+V RA G+S+++ P ++ S L+ +FT + I
Sbjct: 62 SLTIPAAVLLSSLLTFGSLSKNSEIVAMRASGVSLYRSSIPILLISFLIALFTFVFSELI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + K+ I QI K PE++ T
Sbjct: 122 TPYANEKAEYIRKVEIE--KKEIQGIFKQEQIWYRGTRGIYNFKLFDPEHNTLRGITLNY 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKK--VVEYQYGRIPIDKNSTT-----LNIPIKMDG 236
+D+K +I R DA+ A+ ++ +V + P+ + P
Sbjct: 180 MDRKMNLIMRVDAERAVWDRNQWVFYNLLIVRFDSAGFPVMERYGEKILDFPETPSDFRV 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
QK SEQ + ++K+ ++ + R + I P + V + +I S SL
Sbjct: 240 IQKDSEQMGYFELRKYVQKI----RTEGYDATRYLADLHGKIAFPFVCVLLAVIGISFSL 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
+ RS + G+ GF + + S G+SG L P
Sbjct: 296 KTERSGGLAGSIFAGLIIGFSYWILFAFSMSLGRSGTLPP 335
>gi|195940456|ref|ZP_03085838.1| inner membrane protein [Escherichia coli O157:H7 str. EC4024]
gi|295097698|emb|CBK86788.1| Predicted permeases [Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 360
Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats.
Identities = 70/366 (19%), Positives = 136/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + F+ +++ ++ +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGQNFVYIERVKGDD-ELGGVSI 177
Query: 182 ITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
+ ++ + A A N +L +V E S T++ P
Sbjct: 178 YAFNNDRRLQSVRYAASAKFDANNKLWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+LL++
Sbjct: 354 WMLLKR 359
>gi|313200016|ref|YP_004038674.1| permease [Methylovorus sp. MP688]
gi|312439332|gb|ADQ83438.1| permease YjgP/YjgQ family protein [Methylovorus sp. MP688]
Length = 356
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 65/363 (17%), Positives = 136/363 (37%), Gaps = 16/363 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + + + + ++ + + DL + +G+ Y +++ V P
Sbjct: 2 KLLNRYLTQEIVSSIMLIMVALLAMFSFFDLIQELESIGK-GTYGLNKVLVFVLLSAPGH 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +++P LV + L+R SEL+I R GISI + + ++ + T V
Sbjct: 61 VYEVVPVAVLVGTMYALGQLSRHSELIILRVSGISIATIARSLLKVGLIFAVITFFVGEF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ EK L Q D+ Q W++ F+ ++++P++ +
Sbjct: 121 VTPYSEKTAQRLRIQATDSVVAQDFRSGLWVK----DGRSFVNVEEVMPDSG-LMNIHIY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN------STTLNIPIKMDG 236
D + DA + LK V + + + +L P ++
Sbjct: 176 EFDDSFHLRTISDAKTGRFDGENWHLKDVQQTHFLDKTVKSEFFPQAQWQSLIRPELLNV 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E+ ++ + Y I +S + + R E + +V PL + M ++A
Sbjct: 236 LLVVPEKMSAWNLYFYIHHLSANKQK----TSRHEIALWSKMVYPLASLVMVVLALPFGF 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + GI G + + + G P+ +A++P +L + + +L
Sbjct: 292 LQQRSGGASAKIFAGIMLGIVYQVLNRVFVHLGLLNDWSPLMSAVVPTLLFLLAGLTMLF 351
Query: 357 QKE 359
E
Sbjct: 352 MAE 354
>gi|118580062|ref|YP_901312.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
gi|118502772|gb|ABK99254.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
Length = 359
Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats.
Identities = 68/359 (18%), Positives = 155/359 (43%), Gaps = 16/359 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY +L+ L + + V+D+ E + + + A A ++P +I
Sbjct: 3 IIDRYIAMTWLRLLLLCQGSFLSIYLVLDMMERIPRFLRVQGA-LVDIARFFAWKLPEMI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q F L+ ++ L R+SE+V R+ GIS+ ++ P ++ + + ++ I
Sbjct: 62 GQTAAFSVLMATLLTLGLLTRSSEIVAMRSCGISLPRISLPMLLLGGGVSLLLLVNAELI 121
Query: 124 AT----SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+I I++ + ++++I W + N + A+ P + +
Sbjct: 122 VPDSYERMSRIERVDIKKQAGSAVFKRNNI--WFRSDNR----IMQARLFDPRSQVLRGV 175
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKV--VEYQYGRIPIDKNSTT--LNIPIKMD 235
++D+ + R DA+ A + + L+ V E+ G + + T +++ +K+D
Sbjct: 176 VVWSLDQYTNPLSRLDAESAELRGESWLLRGVELKEFTAGEGVVVRKLPTRSIDLNLKVD 235
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + + SF ++ + + + + + +++ T + PL + M ++ +
Sbjct: 236 DLRVLDKNADNLSFGKLREY-ADNLRKGGYEDFKYRTMMHTKFAAPLSALVMVILGIPFA 294
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L SRS + V + GF + + ++ S+G+SG+L P+ AA L I + +
Sbjct: 295 LRGSRSGGVAMGVGASVTIGFAYFVVNAVLLSYGRSGVLPPLVAAWGANFLFILGGLWL 353
>gi|71737643|ref|YP_273426.1| hypothetical protein PSPPH_1159 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71558196|gb|AAZ37407.1| membrane protein, putative [Pseudomonas syringae pv. phaseolicola
1448A]
gi|320322887|gb|EFW78978.1| hypothetical protein PsgB076_20532 [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329804|gb|EFW85792.1| hypothetical protein PsgRace4_11126 [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 353
Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 128/360 (35%), Gaps = 19/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L L L + LV + + + + Y+++ P +
Sbjct: 4 LDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISD--TYTLADALSYVMLTAPRRVY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ L +SEL I RA G+SI +++ + +LL + VLV +A
Sbjct: 62 DTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + +GD Q + W + + FI + P + T
Sbjct: 122 PYAENQAQAARSLAQGSGDAQSARHGLWHRQ----GEEFIHINTVQPNGLML-GVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNSTTLNIPIKMDGF 237
D + ++ A A D +LK V + P+++ L+ P +
Sbjct: 177 DDQRHMLTSSFAKEANFKTDYWELKDVSTTHFNDGRTEVINTPVERWDVALS-PQLLSTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + ++ SN R F+ ++ P + VA+ L+A S
Sbjct: 236 IMPPESLSISGLWNYAHYLADQGLSNG----RYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF I ++ P+ A L+P + +L +
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLMPAAACALAGVYLLRR 351
>gi|187731850|ref|YP_001882954.1| putative permease [Shigella boydii CDC 3083-94]
gi|187428842|gb|ACD08116.1| putative permease [Shigella boydii CDC 3083-94]
Length = 360
Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQTFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+L++K
Sbjct: 354 WLLMRK 359
>gi|54307699|ref|YP_128719.1| putative permease [Photobacterium profundum SS9]
gi|46912122|emb|CAG18917.1| putative permease [Photobacterium profundum SS9]
Length = 356
Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 70/365 (19%), Positives = 128/365 (35%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E ++G+ Y + + + +P
Sbjct: 1 MFKILDWYIGRTIIATTALTLSTLVGLSAIIKYVEQLRKIGD-GTYDLWKALIYVLLSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + +++
Sbjct: 60 RDIEMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMVLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K +L W G+ W + N FI ++ +
Sbjct: 120 QWGAPQAQKSARELRAIWTSGGNILSVQSGVWAKDGND----FIYIGRVHEQ-STLNAVN 174
Query: 181 SITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEY---QYGRIPIDKNSTTLNIPIKMDG 236
D KN + A A L V + + ++ + D
Sbjct: 175 IWQFDDKNTLSKMVFAKSASFTEQQGWLLADVTVTNISKIQQTNTKFDTLPWKTSLSPDK 234
Query: 237 FQ---KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
E+ A Y+ + + S + R E F+ ++ P+ + M L+A S
Sbjct: 235 LAIVMVKPEELALSGVYDYVSYLKESKQ----DASRYELAFWRKLLQPISIAVMMLLALS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS V G+ GF Y + L P AL P I+ + ++I
Sbjct: 291 FVFGPLRSVTMGARVLSGVIFGFTFYISNEVFGPMSLVYRLHPAIGALGPSIVFLFITIY 350
Query: 354 ILLQK 358
+L +K
Sbjct: 351 LLRRK 355
>gi|283786944|ref|YP_003366809.1| permease [Citrobacter rodentium ICC168]
gi|282950398|emb|CBG90046.1| putative permease [Citrobacter rodentium ICC168]
Length = 360
Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats.
Identities = 70/366 (19%), Positives = 138/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNSFVYIERVKGDE-ELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
+ + ++ + A A ++ +L +V E S T++ P
Sbjct: 178 YAFNDQRRLQSVRYAASAKFDPEQKVWRLSQVDESSLQDPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + PV AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPVIGALLPSASFFFISL 353
Query: 353 LILLQK 358
++++K
Sbjct: 354 WLMMRK 359
>gi|253991456|ref|YP_003042812.1| hypothetical protein PAU_03983 [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782906|emb|CAQ86071.1| similar to putative membrane protein yjgq of escherichia coli
[Photorhabdus asymbiotica]
Length = 358
Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats.
Identities = 86/367 (23%), Positives = 151/367 (41%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L+T L L + L +I + ++G+ Y+ + A VP
Sbjct: 1 MFGVLDRYIGRTILQTILMTLFMLVSLSGIIKFVDQLRKVGQ-GEYTTISAGLYALLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IQ P L+ ++ L SELV+ +A G + Q+ + +I L I T+++
Sbjct: 60 KDIQIFFPMAALLGALLGLGALATRSELVVMQASGFTRMQVAGSVMKTAIPLVILTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + FI ++++ + I +
Sbjct: 120 EWVAPQGEQMARNYRAQKMFGGSLVSTTKGMWAKDGAD----FIYIQRVMSDTEI-KGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQY-------GRIPIDKNSTTLNIP 231
+ K++ K AD A+ ND KL +V E G I + T P
Sbjct: 175 IYHFNDDKKLLSVKYADSAVYDENNDLWKLSQVEESDLTDSKKITGSQRISADWKTRLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
++ E + Y+ I + S + + R + + I PL + M L+A
Sbjct: 235 EQLGVVALDPEALSISGLYQYISYLKQSEQESG----RYQLNMWKKIFAPLSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S R+ + + GI GF+ Y + I + V AAL+P +L ++LS
Sbjct: 291 LSFIFGPLRTVPMGVRIITGITLGFLFYLLNEIFGPLSLVYSMPAVLAALLPSLLFLTLS 350
Query: 352 ILILLQK 358
I +LL++
Sbjct: 351 IYLLLKR 357
>gi|260914417|ref|ZP_05920886.1| YjgP/YjgQ family membrane protein [Pasteurella dagmatis ATCC 43325]
gi|260631518|gb|EEX49700.1| YjgP/YjgQ family membrane protein [Pasteurella dagmatis ATCC 43325]
Length = 358
Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats.
Identities = 70/361 (19%), Positives = 140/361 (38%), Gaps = 10/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + +P
Sbjct: 3 MMNTLDRYLGKSILGAIFATLIMLVGLSGIIKFVEQFRLVGK-GTYDIWQAIAYTVLTMP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ +++ NL SEL++ +A G S ++ + +I L I T+ +
Sbjct: 62 KDVETFFPMAALLGSLIALGNLASRSELIVMQASGFSRLKIGLAVMKTAIPLVIITMAIG 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + + FI K+I + D
Sbjct: 122 EWGIPQTEQFARDMRSKAMTGGSLLSVRDGFWAKEGSD----FIYVKRITDD-LELNDIY 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI---PIDKNSTTLNIPIKMDGF 237
+ + ++ K AD A+ K L ++ E + +++ ++ + D
Sbjct: 177 IYSFGENRQLKQVKHADSAVYEEGKWVLHQLNESEITPDEIKTVNRLNSEWKTSLTPDNL 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + S S + ++F + + + E ++ + P+ + M ++A S
Sbjct: 237 GIASLRPTSLSISGLSNYIAFLKDTGQ-ESKKFELTYWRKLFQPISVGVMMMLALSFIFG 295
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + GIF GF+ Y + I + P+A AL+P ++ + ++ +L +
Sbjct: 296 PLRSVTAGARIVTGIFFGFLFYVVNEIFGPLSLVYNVAPLAGALMPSVMFLLITWWLLSR 355
Query: 358 K 358
K
Sbjct: 356 K 356
>gi|85709345|ref|ZP_01040410.1| predicted permease [Erythrobacter sp. NAP1]
gi|85688055|gb|EAQ28059.1| predicted permease [Erythrobacter sp. NAP1]
Length = 365
Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 137/359 (38%), Gaps = 7/359 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K ++ L L+ ++++ +DL ++ E + A+ R+P +I
Sbjct: 11 LTLYLAKMFVVRILAVLVMLVLVLMALDLLGSTGKILEPEGNGQAEIIKYASLRIPQLIA 70
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ +P+ L+ ++ LN+ SE+V +A G+S Q+L P ++ + ++ + + +
Sbjct: 71 RFLPYSVLLATLITLVTLNQNSEVVAMKAAGLSAHQVLAPLLLTAAVVALISFAFNERVV 130
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDFTSI 182
T +Q + D + A ++ ++ T
Sbjct: 131 TRANSTLKAWEAVEYGPIPEQSGVRA---NVYLTDGDNILTASSLIGSGEDIELDNVTWY 187
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFS 241
+ I + A A +L+ + G + + + + + S
Sbjct: 188 SRAPGGIISEQIKATGATYAAPGWRLENPKRFDVGSATTEPIDDVVVGEGLTPEQIDLQS 247
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
++SF+E+ + + + ++ +++ + PL + M L+ + + +RS
Sbjct: 248 VDPDAQSFWELSETI-DAYEAAGRRTSEMRAKWWHRLSGPLSALLMPLLGSVAAFGLARS 306
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
Q + G+ GF + + + G G P AA P L + + +L++ E+
Sbjct: 307 GQLFVRAVIGMALGFAYFVVDNAALAMGSFGGYPPFLAAWAPFFLFLLVGETVLIRTEE 365
>gi|148556807|ref|YP_001264389.1| permease YjgP/YjgQ family protein [Sphingomonas wittichii RW1]
gi|148501997|gb|ABQ70251.1| permease YjgP/YjgQ family protein [Sphingomonas wittichii RW1]
Length = 364
Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats.
Identities = 67/354 (18%), Positives = 133/354 (37%), Gaps = 4/354 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + +L L +I++ +DL + P ++ + R P II + +
Sbjct: 14 YMARMFLVRFAAVLAALVIVLMALDLLGESGDILAYPGNGDAQLWLYVTLRTPQIIARFL 73
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF L+ ++ F LN+ SE++ +A GIS Q+L P VV S+ +GI + +
Sbjct: 74 PFAALLATLITFVTLNQNSEIISMKAAGISAHQILAPLVVASLGVGIVSFTFNERVVARA 133
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ Q + I+P + + + I A + + T D
Sbjct: 134 TAT-LTAWQDADYGPIPRDRGIVPNIWVRDGDDLIHATAVRGRGAQARLDSVTIYDRD-G 191
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-IPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
++I + A+ ++ + + + + + D F + AS
Sbjct: 192 GRLISIIKGERAVQAAGGWRITGASRFDVAKGVTLRLAGFDFAKGVTADRFTLANVDPAS 251
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+S ++ ++ + + + + PL V M L+AA + +RS I
Sbjct: 252 KSIVQLRTAIADLD-AAGRPTGPLRAGLWHKLSGPLSAVLMPLLAAVAAFGLARSGHLFI 310
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
G+ GF + + G G P AA P +L + + +L++ E+
Sbjct: 311 RAVIGMALGFAYFVADNFALAMGNLGAYPPFLAAWAPFLLFLLIGETVLIRTEE 364
>gi|323965651|gb|EGB61105.1| inner membrane protein yjgQ [Escherichia coli M863]
gi|327250208|gb|EGE61927.1| hypothetical protein ECSTEC7V_5012 [Escherichia coli STEC_7v]
Length = 360
Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNENRRLESVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+L++K
Sbjct: 354 WLLMRK 359
>gi|193069794|ref|ZP_03050744.1| putative permease [Escherichia coli E110019]
gi|192956848|gb|EDV87301.1| putative permease [Escherichia coli E110019]
Length = 360
Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 136/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSAAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+L++K
Sbjct: 354 WLLMRK 359
>gi|38704251|ref|NP_313266.2| hypothetical protein ECs5239 [Escherichia coli O157:H7 str. Sakai]
gi|89110978|ref|AP_004758.1| conserved inner membrane protein [Escherichia coli str. K-12
substr. W3110]
gi|90111715|ref|NP_418683.4| lipopolysaccharide export ABC permease of the LptBFGC export
complex [Escherichia coli str. K-12 substr. MG1655]
gi|110644621|ref|YP_672351.1| putative membrane protein YjgQ [Escherichia coli 536]
gi|157155171|ref|YP_001465771.1| putative permease [Escherichia coli E24377A]
gi|157163737|ref|YP_001461055.1| putative permease [Escherichia coli HS]
gi|168749566|ref|ZP_02774588.1| putative permease [Escherichia coli O157:H7 str. EC4113]
gi|168754844|ref|ZP_02779851.1| putative permease [Escherichia coli O157:H7 str. EC4401]
gi|168760517|ref|ZP_02785524.1| putative permease [Escherichia coli O157:H7 str. EC4501]
gi|168766553|ref|ZP_02791560.1| putative permease [Escherichia coli O157:H7 str. EC4486]
gi|168774016|ref|ZP_02799023.1| putative permease [Escherichia coli O157:H7 str. EC4196]
gi|168782789|ref|ZP_02807796.1| putative permease [Escherichia coli O157:H7 str. EC4076]
gi|168784912|ref|ZP_02809919.1| putative permease [Escherichia coli O157:H7 str. EC869]
gi|168797842|ref|ZP_02822849.1| putative permease [Escherichia coli O157:H7 str. EC508]
gi|170021730|ref|YP_001726684.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
gi|170083701|ref|YP_001733021.1| inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
gi|170681768|ref|YP_001746666.1| putative permease [Escherichia coli SMS-3-5]
gi|188493811|ref|ZP_03001081.1| putative permease [Escherichia coli 53638]
gi|191168708|ref|ZP_03030487.1| putative permease [Escherichia coli B7A]
gi|193063693|ref|ZP_03044781.1| putative permease [Escherichia coli E22]
gi|194426570|ref|ZP_03059124.1| putative permease [Escherichia coli B171]
gi|194437817|ref|ZP_03069912.1| putative permease [Escherichia coli 101-1]
gi|195937288|ref|ZP_03082670.1| inner membrane protein [Escherichia coli O157:H7 str. EC4024]
gi|208808552|ref|ZP_03250889.1| putative permease [Escherichia coli O157:H7 str. EC4206]
gi|208812170|ref|ZP_03253499.1| putative permease [Escherichia coli O157:H7 str. EC4045]
gi|208821551|ref|ZP_03261871.1| putative permease [Escherichia coli O157:H7 str. EC4042]
gi|209396919|ref|YP_002273807.1| putative permease [Escherichia coli O157:H7 str. EC4115]
gi|217326107|ref|ZP_03442191.1| putative permease [Escherichia coli O157:H7 str. TW14588]
gi|218556809|ref|YP_002389723.1| hypothetical protein ECIAI1_4493 [Escherichia coli IAI1]
gi|218561420|ref|YP_002394333.1| hypothetical protein ECS88_4849 [Escherichia coli S88]
gi|218692649|ref|YP_002400861.1| hypothetical protein ECED1_5115 [Escherichia coli ED1a]
gi|218698010|ref|YP_002405677.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli 55989]
gi|218702965|ref|YP_002410594.1| hypothetical protein ECIAI39_4735 [Escherichia coli IAI39]
gi|218707868|ref|YP_002415387.1| hypothetical protein ECUMN_4794 [Escherichia coli UMN026]
gi|227886684|ref|ZP_04004489.1| inner membrane protein [Escherichia coli 83972]
gi|238903363|ref|YP_002929159.1| conserved inner membrane protein [Escherichia coli BW2952]
gi|253775115|ref|YP_003037946.1| permease YjgP/YjgQ family protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254164187|ref|YP_003047297.1| inner membrane protein [Escherichia coli B str. REL606]
gi|254796282|ref|YP_003081119.1| inner membrane protein [Escherichia coli O157:H7 str. TW14359]
gi|256019914|ref|ZP_05433779.1| conserved inner membrane protein [Shigella sp. D9]
gi|256025198|ref|ZP_05439063.1| conserved inner membrane protein [Escherichia sp. 4_1_40B]
gi|260847093|ref|YP_003224871.1| inner membrane protein [Escherichia coli O103:H2 str. 12009]
gi|260858414|ref|YP_003232305.1| inner membrane protein [Escherichia coli O26:H11 str. 11368]
gi|260871014|ref|YP_003237416.1| inner membrane protein [Escherichia coli O111:H- str. 11128]
gi|261225381|ref|ZP_05939662.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255366|ref|ZP_05947899.1| inner membrane protein [Escherichia coli O157:H7 str. FRIK966]
gi|293402887|ref|ZP_06646984.1| membrane protein [Escherichia coli FVEC1412]
gi|293407982|ref|ZP_06651822.1| conserved hypothetical protein [Escherichia coli B354]
gi|293417762|ref|ZP_06660384.1| lipopolysaccharide export system permease lptG [Escherichia coli
B185]
gi|293476565|ref|ZP_06664973.1| lipopolysaccharide export system permease lptG [Escherichia coli
B088]
gi|298378413|ref|ZP_06988297.1| lipopolysaccharide export system permease lptG [Escherichia coli
FVEC1302]
gi|300818513|ref|ZP_07098722.1| putative inner membrane protein [Escherichia coli MS 107-1]
gi|300821369|ref|ZP_07101517.1| putative inner membrane protein [Escherichia coli MS 119-7]
gi|300899412|ref|ZP_07117667.1| putative inner membrane protein [Escherichia coli MS 198-1]
gi|300906110|ref|ZP_07123829.1| putative inner membrane protein [Escherichia coli MS 84-1]
gi|300916358|ref|ZP_07133100.1| putative inner membrane protein [Escherichia coli MS 115-1]
gi|300923940|ref|ZP_07139950.1| putative inner membrane protein [Escherichia coli MS 182-1]
gi|300928088|ref|ZP_07143636.1| putative inner membrane protein [Escherichia coli MS 187-1]
gi|300950208|ref|ZP_07164149.1| putative inner membrane protein [Escherichia coli MS 116-1]
gi|300957115|ref|ZP_07169356.1| putative inner membrane protein [Escherichia coli MS 175-1]
gi|300972387|ref|ZP_07171920.1| putative inner membrane protein [Escherichia coli MS 45-1]
gi|300988160|ref|ZP_07178580.1| putative inner membrane protein [Escherichia coli MS 200-1]
gi|301024382|ref|ZP_07188070.1| putative inner membrane protein [Escherichia coli MS 69-1]
gi|301050052|ref|ZP_07196964.1| putative inner membrane protein [Escherichia coli MS 185-1]
gi|301304685|ref|ZP_07210793.1| putative inner membrane protein [Escherichia coli MS 124-1]
gi|301325193|ref|ZP_07218717.1| putative inner membrane protein [Escherichia coli MS 78-1]
gi|301643390|ref|ZP_07243440.1| putative inner membrane protein [Escherichia coli MS 146-1]
gi|306815520|ref|ZP_07449669.1| Inner membrane protein yjgQ [Escherichia coli NC101]
gi|307140957|ref|ZP_07500313.1| Inner membrane protein yjgQ [Escherichia coli H736]
gi|307312963|ref|ZP_07592591.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|309792903|ref|ZP_07687331.1| putative inner membrane protein [Escherichia coli MS 145-7]
gi|312965943|ref|ZP_07780169.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|312973920|ref|ZP_07788091.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|331645011|ref|ZP_08346128.1| inner membrane protein YjgQ [Escherichia coli H736]
gi|331650395|ref|ZP_08351467.1| inner membrane protein YjgQ [Escherichia coli M605]
gi|331656096|ref|ZP_08357084.1| inner membrane protein YjgQ [Escherichia coli M718]
gi|331660843|ref|ZP_08361775.1| inner membrane protein YjgQ [Escherichia coli TA206]
gi|331665931|ref|ZP_08366825.1| inner membrane protein YjgQ [Escherichia coli TA143]
gi|331671170|ref|ZP_08372003.1| inner membrane protein YjgQ [Escherichia coli TA271]
gi|331671403|ref|ZP_08372201.1| inner membrane protein YjgQ [Escherichia coli TA280]
gi|331680400|ref|ZP_08381059.1| inner membrane protein YjgQ [Escherichia coli H591]
gi|331681282|ref|ZP_08381919.1| inner membrane protein YjgQ [Escherichia coli H299]
gi|83288182|sp|P0ADC7|LPTG_ECOL6 RecName: Full=Lipopolysaccharide export system permease protein
lptG
gi|83288183|sp|P0ADC6|LPTG_ECOLI RecName: Full=Lipopolysaccharide export system permease protein
lptG
gi|31323181|gb|AAP43525.1| YjgQ [Escherichia coli B]
gi|85677009|dbj|BAE78259.1| conserved inner membrane protein [Escherichia coli str. K12 substr.
W3110]
gi|87082400|gb|AAC77219.2| lipopolysaccharide export ABC permease of the LptBFGC export
complex [Escherichia coli str. K-12 substr. MG1655]
gi|110346213|gb|ABG72450.1| putative membrane protein YjgQ [Escherichia coli 536]
gi|157069417|gb|ABV08672.1| putative permease [Escherichia coli HS]
gi|157077201|gb|ABV16909.1| putative permease [Escherichia coli E24377A]
gi|169756658|gb|ACA79357.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
gi|169891536|gb|ACB05243.1| conserved inner membrane protein [Escherichia coli str. K-12
substr. DH10B]
gi|170519486|gb|ACB17664.1| putative permease [Escherichia coli SMS-3-5]
gi|187770216|gb|EDU34060.1| putative permease [Escherichia coli O157:H7 str. EC4196]
gi|188016197|gb|EDU54319.1| putative permease [Escherichia coli O157:H7 str. EC4113]
gi|188489010|gb|EDU64113.1| putative permease [Escherichia coli 53638]
gi|188999755|gb|EDU68741.1| putative permease [Escherichia coli O157:H7 str. EC4076]
gi|189357825|gb|EDU76244.1| putative permease [Escherichia coli O157:H7 str. EC4401]
gi|189364202|gb|EDU82621.1| putative permease [Escherichia coli O157:H7 str. EC4486]
gi|189368974|gb|EDU87390.1| putative permease [Escherichia coli O157:H7 str. EC4501]
gi|189375169|gb|EDU93585.1| putative permease [Escherichia coli O157:H7 str. EC869]
gi|189379540|gb|EDU97956.1| putative permease [Escherichia coli O157:H7 str. EC508]
gi|190901256|gb|EDV61026.1| putative permease [Escherichia coli B7A]
gi|192930680|gb|EDV83286.1| putative permease [Escherichia coli E22]
gi|194415309|gb|EDX31577.1| putative permease [Escherichia coli B171]
gi|194423313|gb|EDX39305.1| putative permease [Escherichia coli 101-1]
gi|208728353|gb|EDZ77954.1| putative permease [Escherichia coli O157:H7 str. EC4206]
gi|208733447|gb|EDZ82134.1| putative permease [Escherichia coli O157:H7 str. EC4045]
gi|208741674|gb|EDZ89356.1| putative permease [Escherichia coli O157:H7 str. EC4042]
gi|209158319|gb|ACI35752.1| putative permease [Escherichia coli O157:H7 str. EC4115]
gi|217322328|gb|EEC30752.1| putative permease [Escherichia coli O157:H7 str. TW14588]
gi|218354742|emb|CAV01806.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli 55989]
gi|218363578|emb|CAR01235.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli IAI1]
gi|218368189|emb|CAR05997.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli S88]
gi|218372951|emb|CAR20832.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli IAI39]
gi|218430213|emb|CAR11214.2| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli ED1a]
gi|218434965|emb|CAR15906.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli UMN026]
gi|222036034|emb|CAP78779.1| Inner membrane protein yjgQ [Escherichia coli LF82]
gi|227836257|gb|EEJ46723.1| inner membrane protein [Escherichia coli 83972]
gi|238860250|gb|ACR62248.1| conserved inner membrane protein [Escherichia coli BW2952]
gi|242379782|emb|CAQ34609.1| LptG, subunit of LptABCFG ABC transporter [Escherichia coli
BL21(DE3)]
gi|253326159|gb|ACT30761.1| permease YjgP/YjgQ family protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253976090|gb|ACT41761.1| conserved inner membrane protein [Escherichia coli B str. REL606]
gi|253980246|gb|ACT45916.1| conserved inner membrane protein [Escherichia coli BL21(DE3)]
gi|254595682|gb|ACT75043.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
TW14359]
gi|257757063|dbj|BAI28565.1| inner membrane protein [Escherichia coli O26:H11 str. 11368]
gi|257762240|dbj|BAI33737.1| inner membrane protein [Escherichia coli O103:H2 str. 12009]
gi|257767370|dbj|BAI38865.1| inner membrane protein [Escherichia coli O111:H- str. 11128]
gi|260450918|gb|ACX41340.1| permease YjgP/YjgQ family protein [Escherichia coli DH1]
gi|281181360|dbj|BAI57690.1| conserved hypothetical protein [Escherichia coli SE15]
gi|284924432|emb|CBG37557.1| putative permease [Escherichia coli 042]
gi|291321018|gb|EFE60460.1| lipopolysaccharide export system permease lptG [Escherichia coli
B088]
gi|291429802|gb|EFF02816.1| membrane protein [Escherichia coli FVEC1412]
gi|291430480|gb|EFF03478.1| lipopolysaccharide export system permease lptG [Escherichia coli
B185]
gi|291472233|gb|EFF14715.1| conserved hypothetical protein [Escherichia coli B354]
gi|298280747|gb|EFI22248.1| lipopolysaccharide export system permease lptG [Escherichia coli
FVEC1302]
gi|300298210|gb|EFJ54595.1| putative inner membrane protein [Escherichia coli MS 185-1]
gi|300305970|gb|EFJ60490.1| putative inner membrane protein [Escherichia coli MS 200-1]
gi|300316133|gb|EFJ65917.1| putative inner membrane protein [Escherichia coli MS 175-1]
gi|300356990|gb|EFJ72860.1| putative inner membrane protein [Escherichia coli MS 198-1]
gi|300396608|gb|EFJ80146.1| putative inner membrane protein [Escherichia coli MS 69-1]
gi|300402053|gb|EFJ85591.1| putative inner membrane protein [Escherichia coli MS 84-1]
gi|300410966|gb|EFJ94504.1| putative inner membrane protein [Escherichia coli MS 45-1]
gi|300416318|gb|EFJ99628.1| putative inner membrane protein [Escherichia coli MS 115-1]
gi|300419818|gb|EFK03129.1| putative inner membrane protein [Escherichia coli MS 182-1]
gi|300450448|gb|EFK14068.1| putative inner membrane protein [Escherichia coli MS 116-1]
gi|300463885|gb|EFK27378.1| putative inner membrane protein [Escherichia coli MS 187-1]
gi|300526258|gb|EFK47327.1| putative inner membrane protein [Escherichia coli MS 119-7]
gi|300528917|gb|EFK49979.1| putative inner membrane protein [Escherichia coli MS 107-1]
gi|300840035|gb|EFK67795.1| putative inner membrane protein [Escherichia coli MS 124-1]
gi|300847954|gb|EFK75714.1| putative inner membrane protein [Escherichia coli MS 78-1]
gi|301078220|gb|EFK93026.1| putative inner membrane protein [Escherichia coli MS 146-1]
gi|305851182|gb|EFM51637.1| Inner membrane protein yjgQ [Escherichia coli NC101]
gi|306907131|gb|EFN37638.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|307556432|gb|ADN49207.1| putative membrane protein YjgQ [Escherichia coli ABU 83972]
gi|308123189|gb|EFO60451.1| putative inner membrane protein [Escherichia coli MS 145-7]
gi|309704766|emb|CBJ04117.1| putative permease [Escherichia coli ETEC H10407]
gi|310331454|gb|EFP98710.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|312289186|gb|EFR17080.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|312948915|gb|ADR29742.1| inner membrane protein [Escherichia coli O83:H1 str. NRG 857C]
gi|315063569|gb|ADT77896.1| conserved inner membrane protein [Escherichia coli W]
gi|315138813|dbj|BAJ45972.1| inner membrane protein yjgQ [Escherichia coli DH1]
gi|315255621|gb|EFU35589.1| putative inner membrane protein [Escherichia coli MS 85-1]
gi|315293627|gb|EFU52979.1| putative inner membrane protein [Escherichia coli MS 153-1]
gi|315298979|gb|EFU58233.1| putative inner membrane protein [Escherichia coli MS 16-3]
gi|320639019|gb|EFX08665.1| lipopolysaccharide ABC transporter permease [Escherichia coli
O157:H7 str. G5101]
gi|320644389|gb|EFX13454.1| lipopolysaccharide ABC transporter permease [Escherichia coli
O157:H- str. 493-89]
gi|320649706|gb|EFX18230.1| lipopolysaccharide ABC transporter permease [Escherichia coli
O157:H- str. H 2687]
gi|320655103|gb|EFX23064.1| lipopolysaccharide ABC transporter permease [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320660609|gb|EFX28070.1| lipopolysaccharide ABC transporter permease [Escherichia coli
O55:H7 str. USDA 5905]
gi|320665536|gb|EFX32582.1| lipopolysaccharide ABC transporter permease [Escherichia coli
O157:H7 str. LSU-61]
gi|323157529|gb|EFZ43638.1| hypothetical protein ECEPECA14_0586 [Escherichia coli EPECa14]
gi|323162061|gb|EFZ47933.1| hypothetical protein ECE128010_1826 [Escherichia coli E128010]
gi|323171708|gb|EFZ57354.1| hypothetical protein ECLT68_3917 [Escherichia coli LT-68]
gi|323176177|gb|EFZ61769.1| hypothetical protein ECOK1180_4867 [Escherichia coli 1180]
gi|323181996|gb|EFZ67407.1| hypothetical protein ECOK1357_4674 [Escherichia coli 1357]
gi|323189856|gb|EFZ75134.1| hypothetical protein ECRN5871_1643 [Escherichia coli RN587/1]
gi|323380351|gb|ADX52619.1| permease YjgP/YjgQ family protein [Escherichia coli KO11]
gi|323935384|gb|EGB31732.1| inner membrane protein yjgQ [Escherichia coli E1520]
gi|323940180|gb|EGB36374.1| inner membrane protein yjgQ [Escherichia coli E482]
gi|323945995|gb|EGB42033.1| inner membrane protein yjgQ [Escherichia coli H120]
gi|323960303|gb|EGB55944.1| inner membrane protein yjgQ [Escherichia coli H489]
gi|323970484|gb|EGB65743.1| inner membrane protein yjgQ [Escherichia coli TA007]
gi|323975395|gb|EGB70496.1| inner membrane protein yjgQ [Escherichia coli TW10509]
gi|324005135|gb|EGB74354.1| putative inner membrane protein [Escherichia coli MS 57-2]
gi|324013726|gb|EGB82945.1| putative inner membrane protein [Escherichia coli MS 60-1]
gi|324019239|gb|EGB88458.1| putative inner membrane protein [Escherichia coli MS 117-3]
gi|324118823|gb|EGC12715.1| inner membrane protein yjgQ [Escherichia coli E1167]
gi|331035986|gb|EGI08224.1| inner membrane protein YjgQ [Escherichia coli H736]
gi|331040789|gb|EGI12947.1| inner membrane protein YjgQ [Escherichia coli M605]
gi|331046450|gb|EGI18540.1| inner membrane protein YjgQ [Escherichia coli M718]
gi|331051885|gb|EGI23924.1| inner membrane protein YjgQ [Escherichia coli TA206]
gi|331056982|gb|EGI28976.1| inner membrane protein YjgQ [Escherichia coli TA143]
gi|331061759|gb|EGI33685.1| inner membrane protein YjgQ [Escherichia coli TA271]
gi|331071248|gb|EGI42605.1| inner membrane protein YjgQ [Escherichia coli TA280]
gi|331071863|gb|EGI43199.1| inner membrane protein YjgQ [Escherichia coli H591]
gi|331081503|gb|EGI52664.1| inner membrane protein YjgQ [Escherichia coli H299]
gi|332083263|gb|EGI88494.1| hypothetical protein SB521682_5142 [Shigella boydii 5216-82]
gi|332083781|gb|EGI88999.1| hypothetical protein SD15574_5323 [Shigella dysenteriae 155-74]
gi|332346341|gb|AEE59675.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 360
Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+L++K
Sbjct: 354 WLLMRK 359
>gi|239993539|ref|ZP_04714063.1| predicted permease [Alteromonas macleodii ATCC 27126]
Length = 353
Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats.
Identities = 63/363 (17%), Positives = 136/363 (37%), Gaps = 16/363 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + L T L + L +I E ++GE +Y + + +
Sbjct: 1 MFKILDLYIARTLLGTITVTLSVLIGLSALIKFVEQLRKIGE-GDYDMLVAFIYVLLSLA 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++Q P TL+ ++ L SELV+ +A G+S W ++N + ++++ + + V
Sbjct: 60 RDLEQFFPMATLLGGLIGMGVLASNSELVVMQAAGMSRWNIINSAMKSTLVMILLVMAVG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ E + + G SD + W + D F+ ++L ++ +D +
Sbjct: 120 EWVTPYSETKAKQIRTEAISGGSLFSSDKLVWAK----DGDRFVSIGQVLSQDS-LKDVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST------TLNIPIKM 234
+ + + A D L V ++ + + + P K+
Sbjct: 175 IFSFNPDLSLESITHAKNGAFDGDGWWLSDVEVTKFTETNVTVDENNRMRWNSTLTPDKL 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
E + + + + +++ R + + + P+ + M L+A S
Sbjct: 235 GIVAVKPEALSITGLLDYVNYLENNDQ----DPSRYQLALWRKVFQPISVGVMLLMALSF 290
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS V G+ +GF + + + L P AL+P +L +++ ++
Sbjct: 291 IFGPLRSVTMGARVIMGVLTGFGFFILNEVFGPVSLVYQLPPFLGALLPSLLFAAIAGVM 350
Query: 355 LLQ 357
L +
Sbjct: 351 LRR 353
>gi|30065451|ref|NP_839622.1| hypothetical protein S4488 [Shigella flexneri 2a str. 2457T]
gi|56480550|ref|NP_709939.2| hypothetical protein SF4227 [Shigella flexneri 2a str. 301]
gi|30043715|gb|AAP19434.1| hypothetical protein S4488 [Shigella flexneri 2a str. 2457T]
gi|56384101|gb|AAN45646.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|313646463|gb|EFS10925.1| hypothetical protein SF2457T_5378 [Shigella flexneri 2a str. 2457T]
gi|332748940|gb|EGJ79363.1| hypothetical protein SFK671_4979 [Shigella flexneri K-671]
gi|332749802|gb|EGJ80215.1| hypothetical protein SF274771_5046 [Shigella flexneri 2747-71]
gi|332763113|gb|EGJ93356.1| hypothetical protein SF293071_4855 [Shigella flexneri 2930-71]
gi|333010221|gb|EGK29654.1| hypothetical protein SFVA6_0009 [Shigella flexneri VA-6]
gi|333011252|gb|EGK30666.1| hypothetical protein SFK272_0205 [Shigella flexneri K-272]
gi|333011952|gb|EGK31337.1| hypothetical protein SFK304_5275 [Shigella flexneri K-304]
gi|333012149|gb|EGK31531.1| hypothetical protein SFK227_5242 [Shigella flexneri K-227]
Length = 360
Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 138/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-VLGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTDLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+L++K
Sbjct: 354 WLLMRK 359
>gi|332749215|gb|EGJ79636.1| hypothetical protein SF434370_4578 [Shigella flexneri 4343-70]
gi|333009229|gb|EGK28685.1| hypothetical protein SFK218_0005 [Shigella flexneri K-218]
Length = 360
Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 139/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+++
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMVIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-VLGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTDLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+L++K
Sbjct: 354 WLLMRK 359
>gi|146313280|ref|YP_001178354.1| permease YjgP/YjgQ family protein [Enterobacter sp. 638]
gi|145320156|gb|ABP62303.1| permease YjgP/YjgQ family protein [Enterobacter sp. 638]
Length = 360
Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats.
Identities = 68/366 (18%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + +P
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSIPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ ++ +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLMSTQQGLWAK----DGNNFVYIERVKGDD-ELGGVSI 177
Query: 182 ITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
+ ++ + A A N +L +V E S T++ P
Sbjct: 178 YAFNDNRRLQSVRYAATAKFDSANRVWRLSQVDESNLQDPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I P+ + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPMSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVAMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPLIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+LL++
Sbjct: 354 WLLLRR 359
>gi|254229297|ref|ZP_04922715.1| putative permease, YjgP/YjgQ family [Vibrio sp. Ex25]
gi|262393203|ref|YP_003285057.1| hypothetical protein VEA_002430 [Vibrio sp. Ex25]
gi|151938221|gb|EDN57061.1| putative permease, YjgP/YjgQ family [Vibrio sp. Ex25]
gi|262336797|gb|ACY50592.1| putative membrane protein [Vibrio sp. Ex25]
Length = 356
Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats.
Identities = 68/366 (18%), Positives = 126/366 (34%), Gaps = 19/366 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E ++G Y ++ VP
Sbjct: 1 MFKILDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGR-GVYDLTHALYFVLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N FI K+ +
Sbjct: 120 QWGAPEAQKMARDLRSFAISGGSIVSVRSGVWARDAND----FIFIGKVEDD--KLYALN 173
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNSTTLNI-------PI 232
D + A+ ++ ++ V + + P
Sbjct: 174 MWRFDDDKNLQKVIFAEEVDYQQDNNWLMRDVQITDMKNENVISKQDIEQMEWHTSLAPD 233
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ E+ + Y+ + + S + R E F+ + PL + M L+A
Sbjct: 234 KLAVVTVKPEELSLSGLYDYVTYLKASEQ----DASRYELAFWRKLTQPLSIAVMMLMAL 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS V G+ +GF Y + PV AL P ++ ++++I
Sbjct: 290 SFVFGPLRSVTMGARVLSGVVAGFTFYISSEFFGPLSLVYGISPVFGALAPSLVFLAIAI 349
Query: 353 LILLQK 358
+L +K
Sbjct: 350 ALLRRK 355
>gi|215489604|ref|YP_002332035.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
E2348/69]
gi|215267676|emb|CAS12134.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
E2348/69]
Length = 360
Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats.
Identities = 70/366 (19%), Positives = 138/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMQVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + R + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSIRGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+L++K
Sbjct: 354 WLLMRK 359
>gi|320530395|ref|ZP_08031454.1| hypothetical protein HMPREF9555_01558 [Selenomonas artemidis F0399]
gi|320137359|gb|EFW29282.1| hypothetical protein HMPREF9555_01558 [Selenomonas artemidis F0399]
Length = 369
Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats.
Identities = 61/363 (16%), Positives = 143/363 (39%), Gaps = 14/363 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y F+ + L+ + + Q S+ + +P ++
Sbjct: 10 ILDKYIFREVFVSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPGVV 69
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ F L+ SE+ ++ GI+ ++ P V+ ++ + +L +
Sbjct: 70 MWTFPMSMLLASLLTFGKLSSASEITAMKSCGINFTRIAAPAVLLGFVVSVGAILFNEYV 129
Query: 124 ATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
++I + + N + + + +I++ Q + A+ E + +
Sbjct: 130 VPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEITDGQIRRLVYARAYDAEQQRLTNVSLQ 189
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNI---PIKMD 235
K+ H ++A+ A + + Y +++ + L + P ++
Sbjct: 190 VFGDDGKVSHVENAEYAEWTGKEWIMHSGDVYDIADEHMERHMRFETQVLPVQKDPRQII 249
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
QK E+ R I M ++ + + E + Y + +P+ + TLI +
Sbjct: 250 REQKSPEEMTMRELRRQIALM----QTQYVNTNKLEAELYQRVSVPMASLIFTLIGVPLG 305
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ +R N A + F Y ++T+ +F + G+L P+ A IP I+ I ++ IL
Sbjct: 306 IQPTR-NSSSAGFAMSVIIIFFYYALMTMGNAFARGGVLPPMLAVWIPNIVGI-IAGAIL 363
Query: 356 LQK 358
++
Sbjct: 364 FRR 366
>gi|15804854|ref|NP_290895.1| hypothetical protein Z5874 [Escherichia coli O157:H7 EDL933]
gi|26251171|ref|NP_757211.1| hypothetical protein c5363 [Escherichia coli CFT073]
gi|254037286|ref|ZP_04871363.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
gi|291285674|ref|YP_003502492.1| Inner membrane protein yjgQ [Escherichia coli O55:H7 str. CB9615]
gi|332281055|ref|ZP_08393468.1| conserved hypothetical protein [Shigella sp. D9]
gi|12519274|gb|AAG59461.1|AE005658_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|26111603|gb|AAN83785.1|AE016771_296 Hypothetical protein yjgQ [Escherichia coli CFT073]
gi|537104|gb|AAA97159.1| ORF_o361 [Escherichia coli str. K-12 substr. MG1655]
gi|13364717|dbj|BAB38662.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|209749438|gb|ACI73026.1| hypothetical protein ECs5239 [Escherichia coli]
gi|209749440|gb|ACI73027.1| hypothetical protein ECs5239 [Escherichia coli]
gi|209749442|gb|ACI73028.1| hypothetical protein ECs5239 [Escherichia coli]
gi|209749444|gb|ACI73029.1| hypothetical protein ECs5239 [Escherichia coli]
gi|209749446|gb|ACI73030.1| hypothetical protein ECs5239 [Escherichia coli]
gi|226840392|gb|EEH72394.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
gi|290765547|gb|ADD59508.1| Inner membrane protein yjgQ [Escherichia coli O55:H7 str. CB9615]
gi|332103407|gb|EGJ06753.1| conserved hypothetical protein [Shigella sp. D9]
Length = 361
Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 5 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 64 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 124 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELGGISI 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 179 YAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 238
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 239 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 294
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 295 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 354
Query: 353 LILLQK 358
+L++K
Sbjct: 355 WLLMRK 360
>gi|313895766|ref|ZP_07829321.1| permease, YjgP/YjgQ family [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312975595|gb|EFR41055.1| permease, YjgP/YjgQ family [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 366
Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats.
Identities = 61/363 (16%), Positives = 143/363 (39%), Gaps = 14/363 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y F+ + L+ + + Q S+ + +P ++
Sbjct: 7 ILDKYIFREVFVSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPGVV 66
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ F L+ SE+ ++ GI+ ++ P V+ ++ + +L +
Sbjct: 67 MWTFPMSMLLASLLTFGKLSSASEITAMKSCGINFTRIAAPAVLLGFVVSVGAILFNEYV 126
Query: 124 ATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
++I + + N + + + +I++ Q + A+ E + +
Sbjct: 127 VPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEITDGQIRRLVYARAYDAEQQRLTNVSLQ 186
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNI---PIKMD 235
K+ H ++A+ A + + Y +++ + L + P ++
Sbjct: 187 VFGDDGKVSHVENAEYAEWTGKEWIMHSGDVYDIADEHMERHMRFETQVLPVQKDPRQII 246
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
QK E+ R I M ++ + + E + Y + +P+ + TLI +
Sbjct: 247 REQKSPEEMTMRELRRQIALM----QTQYVNTNKLEAELYQRVSVPMASLIFTLIGVPLG 302
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ +R N A + F Y ++T+ +F + G+L P+ A IP I+ I ++ IL
Sbjct: 303 IQPTR-NSSSAGFAMSVIIIFFYYALMTMGNAFARGGVLPPMLAVWIPNIVGI-IAGAIL 360
Query: 356 LQK 358
++
Sbjct: 361 FRR 363
>gi|281603538|gb|ADA76522.1| Inner membrane protein yjgQ [Shigella flexneri 2002017]
Length = 361
Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 138/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 5 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 64 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + + +
Sbjct: 124 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-VLGGISI 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 179 YAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTDLTPD 238
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 239 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 294
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 295 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 354
Query: 353 LILLQK 358
+L++K
Sbjct: 355 WLLMRK 360
>gi|262274978|ref|ZP_06052789.1| putative membrane protein [Grimontia hollisae CIP 101886]
gi|262221541|gb|EEY72855.1| putative membrane protein [Grimontia hollisae CIP 101886]
Length = 357
Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats.
Identities = 70/367 (19%), Positives = 128/367 (34%), Gaps = 20/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E +GE ++++ +P
Sbjct: 1 MFKILDLYIGRTIIATTSLCLATLVGLSAIIKFVEQLRSVGE-GSFTMMTAVQYVLLSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + + +
Sbjct: 60 RDIEMFFPMAVLLGALIGLGTLASSSELVVMQAAGFSKLDIGLSVLKTAMPLMLVVLALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K +L K G+ W + + FI + +
Sbjct: 120 QWGAPDAQKAARELRAFAKSGGNVMSVRRGVWAKDGSD----FIYIARTDQQES-LVGVN 174
Query: 181 SITIDKKNKIIHRKDADLAI-IYNDKVKLKKVVEYQYGRIPIDKNSTTLN--------IP 231
D + + A+ A + D L+ V + P+ N TT P
Sbjct: 175 IWKFDDTQTLKAQVFAEQARYLDKDSWMLENVTVTHFDG-PVKINETTEKQLAWKTTLTP 233
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + Y + + S + R E + ++ PL + M L+A
Sbjct: 234 EKLSIVTVKPEELSLSGVYSYVDYLKASEQ----DASRYELALWRKVLQPLSIGVMMLLA 289
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS V G+ GF Y + L P A+ P + I ++
Sbjct: 290 LSFVFGPLRSVTMGARVLSGVIFGFAFYISNEVFGPMTLVYNLPPFVGAIAPSLAFIGVT 349
Query: 352 ILILLQK 358
+ +L +K
Sbjct: 350 LYLLNRK 356
>gi|153834586|ref|ZP_01987253.1| permease YjgP/YjgQ family protein [Vibrio harveyi HY01]
gi|148869029|gb|EDL68074.1| permease YjgP/YjgQ family protein [Vibrio harveyi HY01]
Length = 356
Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats.
Identities = 66/366 (18%), Positives = 127/366 (34%), Gaps = 19/366 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L Y + + TT L + L +I E ++G Y + +P
Sbjct: 1 MFKLLDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGR-GAYDLMHALYFVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N FI K+ +
Sbjct: 120 QWGAPEAQKMARDLRAFALSGGSIVSVRAGVWARDAND----FIFIGKVEDD--KLYGLN 173
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNSTTLNI-------PI 232
D+ K+ A+ ++ ++ V + + P
Sbjct: 174 MWRFDEDKKLDKVIFAEEVDYQQDNNWLMRYVQVTDMENENVITKRDVEQMEWHTSLAPD 233
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ E+ + Y+ + + S + R E F+ + PL + M L+A
Sbjct: 234 KLAVVTVKPEELSLSGLYDYVTYLKASEQ----DASRYELAFWRKLSQPLSIAVMMLMAL 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS V G+ +GF Y + PV AL P ++ +++++
Sbjct: 290 SFVFGPLRSVTMGARVLSGVVAGFTFYISSEFFGPLTLVYGIPPVFGALAPSLVFLAIAV 349
Query: 353 LILLQK 358
+L +K
Sbjct: 350 SLLRRK 355
>gi|157147732|ref|YP_001455051.1| hypothetical protein CKO_03536 [Citrobacter koseri ATCC BAA-895]
gi|157084937|gb|ABV14615.1| hypothetical protein CKO_03536 [Citrobacter koseri ATCC BAA-895]
Length = 360
Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELAGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
+ + ++ + A A N +L +V E S T++ P
Sbjct: 178 YAFNDQRRLQSVRYAASAKFDADNKVWRLSQVDESDLKDPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
++++K
Sbjct: 354 WLMMRK 359
>gi|110807998|ref|YP_691518.1| hypothetical protein SFV_4231 [Shigella flexneri 5 str. 8401]
gi|110617546|gb|ABF06213.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
Length = 360
Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 138/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-VLGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTDLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVITGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+L++K
Sbjct: 354 WLLMRK 359
>gi|218551559|ref|YP_002385351.1| hypothetical protein EFER_4344 [Escherichia fergusonii ATCC 35469]
gi|218359101|emb|CAQ91762.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia fergusonii ATCC 35469]
gi|324112113|gb|EGC06091.1| inner membrane protein yjgQ [Escherichia fergusonii B253]
gi|325499820|gb|EGC97679.1| hypothetical protein ECD227_3917 [Escherichia fergusonii ECD227]
Length = 360
Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats.
Identities = 70/366 (19%), Positives = 135/366 (36%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + F+ +++ +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQEGLWAK----DGKNFVYIERV-KGEKELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
+ + ++ + A A D +L +V E S T++ P
Sbjct: 178 YAFNDQRRLQSIRYAASATFDPDNKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+L+++
Sbjct: 354 WLLMRR 359
>gi|156935579|ref|YP_001439495.1| hypothetical protein ESA_03443 [Cronobacter sakazakii ATCC BAA-894]
gi|156533833|gb|ABU78659.1| hypothetical protein ESA_03443 [Cronobacter sakazakii ATCC BAA-894]
Length = 360
Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats.
Identities = 75/366 (20%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + T + L + L +I + + GE +Y+ VP
Sbjct: 4 FSVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLKKTGE-GSYTALGAGTYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L IFT+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVAASVMKTAIPLVIFTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ +L Q G + W + + F+ +++ EN +
Sbjct: 123 WVAPQGEQMARNLRAQQMYGGSLLSTQQGMWAK----DGNNFVYIERVKGEN-ELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
+ K ++ + A A + +L +V E S TL P
Sbjct: 178 YAFNDKRRLESVRYAANAKFDAEHKLWRLSQVDESNLKNPQQITGSQTLTGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLRNYVKYLKASGQ----DASRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFIFYVLDQIFGPLSLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+L+++
Sbjct: 354 WLLMKR 359
>gi|170718033|ref|YP_001785073.1| permease YjgP/YjgQ family protein [Haemophilus somnus 2336]
gi|168826162|gb|ACA31533.1| permease YjgP/YjgQ family protein [Haemophilus somnus 2336]
Length = 356
Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats.
Identities = 82/366 (22%), Positives = 140/366 (38%), Gaps = 16/366 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L T L LL + L +I E +G+ Y + + + +P
Sbjct: 1 MMNTLDRYIGKNILGTILATLLMLVGLSAIIKFVEQFRSIGK-GTYDVIQATLFTLLTMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ +++ NL SEL++ ++ G S +++ + ++ L + T+++
Sbjct: 60 KDIETFFPMAALLGSLIALGNLASRSELIVIQSAGFSRFRIGLAVMKTALPLMLITMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E D+ + G W + N FI +I + D
Sbjct: 120 EWGIPQTEHFARDMRAKAISGGSMLSVKNSIWAKDGND----FIYVGRITNDIS-LNDIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK------NSTTLNIPIKM 234
+ D K ++ A+ A + K KL + + Q I N +T P K+
Sbjct: 175 IYSFDDKRQLKQVTHANQASFEHGKWKLSGINQSQIFADEIKTINRLKDNWSTTLTPDKL 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ Y IK M + + R E F+ + P+ + M L+A S
Sbjct: 235 GIASLRPTSLSMTGLYNYIKFMKETGQ----DAKRFELTFWQKVFQPVSVAVMMLLALSF 290
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS + GIF GF+ Y I I+ + V AALIP +L + L +
Sbjct: 291 IFGSLRSVTAGARIVTGIFFGFLFYVINEILGRLSLLYDIPIVLAALIPSLLFMILIWWL 350
Query: 355 LLQKED 360
L +K +
Sbjct: 351 LNRKRE 356
>gi|323166626|gb|EFZ52385.1| hypothetical protein SS53G_3092 [Shigella sonnei 53G]
Length = 360
Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 138/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVASQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+L++K
Sbjct: 354 WLLMRK 359
>gi|85713125|ref|ZP_01044158.1| Predicted permease [Idiomarina baltica OS145]
gi|85693041|gb|EAQ31006.1| Predicted permease [Idiomarina baltica OS145]
Length = 355
Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats.
Identities = 71/361 (19%), Positives = 142/361 (39%), Gaps = 10/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL RY LKT+L L+ L +I E +G +Y + A+ +P
Sbjct: 1 MFSILDRYIGATVLKTSLMSLIVLTGLSGLIRFVEQLKSVGR-GSYEVIDAALFVFYSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L SEL++ +A G S + + ++++ I + +
Sbjct: 60 RDVEVFFPMAALLGGLIGMGVLASNSELIVMQAAGRSKLNIAGAVMKTAVVMMIAVIAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E G + Q G + W + + FI ++ +
Sbjct: 120 EWVAPPMEAKGRLIRAQEISGGSLISAQRGVWAKDGDD----FINISEV-EDTGRLNGVL 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGF 237
D + ++ A A+ N+ +L +VVE + + + + +ST + D
Sbjct: 175 IYDFDGQQQLETVTYAQTAVYSNESWRLSQVVETRLTQQKVIEKRLDSTVWQSSLTPDKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S S +I +++ KSN R E + ++ P+ + M L+A S
Sbjct: 235 GVVTIKPESLSISGLIDYLTYL-KSNEQSAQRYELALWRKVLSPVTVAVMLLVALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + G+ +GF + I + + V AL+P ++ S++I ++ +
Sbjct: 294 PLRETSMGARILLGVITGFAFHVSNEIFGPLAQVYQVPAVLGALLPSLVFASVAIFVMQR 353
Query: 358 K 358
K
Sbjct: 354 K 354
>gi|156975867|ref|YP_001446774.1| hypothetical protein VIBHAR_03633 [Vibrio harveyi ATCC BAA-1116]
gi|156527461|gb|ABU72547.1| hypothetical protein VIBHAR_03633 [Vibrio harveyi ATCC BAA-1116]
Length = 356
Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats.
Identities = 66/366 (18%), Positives = 127/366 (34%), Gaps = 19/366 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L Y + + TT L + L +I E ++G Y + +P
Sbjct: 1 MFKLLDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGR-GAYDLMHALYFVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N FI K+ +
Sbjct: 120 QWGAPEAQKMARDLRAFALSGGSIVSVRAGVWARDAND----FIFIGKVEDD--KLYGLN 173
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNSTTLNI-------PI 232
D+ K+ A+ ++ ++ V + + P
Sbjct: 174 MWRFDEDKKLDKVIFAEEVDYQQDNNWLMRYVQVTDMENENVITKRDVEQMEWHTSLAPD 233
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ E+ + Y+ + + + + R E F+ + PL + M L+A
Sbjct: 234 KLAVVTVKPEELSLSGLYDYVSYLKATEQ----DASRYELAFWRKLSQPLSIAVMMLMAL 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS V G+ +GF Y + PV AL P ++ ++++I
Sbjct: 290 SFVFGPLRSVTMGSRVLSGVVAGFTFYISSEFFGPLTLVYGIPPVFGALAPSLVFLAIAI 349
Query: 353 LILLQK 358
+L +K
Sbjct: 350 SLLRRK 355
>gi|28899416|ref|NP_799021.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
gi|153839669|ref|ZP_01992336.1| permease YjgP/YjgQ family protein [Vibrio parahaemolyticus AQ3810]
gi|260363480|ref|ZP_05776316.1| conserved inner membrane protein [Vibrio parahaemolyticus K5030]
gi|260879349|ref|ZP_05891704.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
gi|260895692|ref|ZP_05904188.1| conserved inner membrane protein [Vibrio parahaemolyticus Peru-466]
gi|260900264|ref|ZP_05908659.1| conserved inner membrane protein [Vibrio parahaemolyticus AQ4037]
gi|28807652|dbj|BAC60905.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
gi|149746812|gb|EDM57800.1| permease YjgP/YjgQ family protein [Vibrio parahaemolyticus AQ3810]
gi|308087431|gb|EFO37126.1| conserved inner membrane protein [Vibrio parahaemolyticus Peru-466]
gi|308093069|gb|EFO42764.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
gi|308107540|gb|EFO45080.1| conserved inner membrane protein [Vibrio parahaemolyticus AQ4037]
gi|308112550|gb|EFO50090.1| conserved inner membrane protein [Vibrio parahaemolyticus K5030]
gi|328471447|gb|EGF42342.1| lipopolysaccharide ABC transporter permease [Vibrio
parahaemolyticus 10329]
Length = 356
Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats.
Identities = 66/366 (18%), Positives = 125/366 (34%), Gaps = 19/366 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E ++G Y ++ VP
Sbjct: 1 MFKILDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGR-GVYDLTHALYFVLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + ++ L + + +
Sbjct: 60 RDVEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N FI K+ +
Sbjct: 120 QWGAPEAQKMARDLRSFALSGGSIVSVRAGVWARDAND----FIFIGKVEDD--KLYALN 173
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNST-------TLNIPI 232
D + A+ ++ ++ V + T P
Sbjct: 174 MWRFDDDKNLEKVIFAEEVDYQQDNNWLMRDVQITNMQDENVISKQEMDQMEWHTSLAPD 233
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ E+ + Y+ + + S + R E F+ + PL + M L+A
Sbjct: 234 KLAVVTVKPEELSLSGLYDYVTYLKASEQ----DASRYELAFWRKLTQPLSIAVMMLMAL 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS V G+ +GF Y + P+ AL P + +++++
Sbjct: 290 SFVFGPLRSVTMGARVLSGVVAGFTFYISSEFFGPLTLVYGIPPIFGALAPSLAFLAIAV 349
Query: 353 LILLQK 358
+L +K
Sbjct: 350 ALLRRK 355
>gi|332086995|gb|EGI92129.1| hypothetical protein SB359474_4824 [Shigella boydii 3594-74]
Length = 360
Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQTFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPLGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+L++K
Sbjct: 354 WLLMRK 359
>gi|304321347|ref|YP_003854990.1| putative permease [Parvularcula bermudensis HTCC2503]
gi|303300249|gb|ADM09848.1| predicted permease [Parvularcula bermudensis HTCC2503]
Length = 364
Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats.
Identities = 71/359 (19%), Positives = 155/359 (43%), Gaps = 6/359 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y K L L LL ++V +DL E + +P L R P +I +
Sbjct: 7 YLAKRTLGGVLGLLLVIWLIVVSVDLIEAMRDIARIPGAGPIAALRLTLLRTPQLILSLS 66
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PFI L + + + R SE+ + RA G+S+W+L+ P V+ ++ G+ ++P+A
Sbjct: 67 PFIFLFGTLWAYGQMARMSEIAVLRAAGLSVWRLIFPPVILAVAAGLLIATTLDPLAARL 126
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQIS--NPQQDIFIGAKKILPENHIWEDFTSITID 185
+ + + + + W++ + + A++ + + E+ T
Sbjct: 127 AETAQTVKNEARSGEEAAAKRPHLWLRQNEIGSDGIALLHAERYRENDPVLEEVTVWRRT 186
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD--GFQKFSEQ 243
+ I R DA A+I ++L + + + +P+ +D + +
Sbjct: 187 QDGAFIERLDAPRALIDAQVLRLMQARRSTSIATTAPQIEAEIEVPVAIDLRLLDQDRQT 246
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE-FSRSN 302
+ S + + + + + + + +++ L +PL L AM ++A + +L +R
Sbjct: 247 ADTLSVWALPETIRLMGDAGM-TTTKFRLRYHALWSLPLKLAAMVILACAFALGMNARGG 305
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+++ GI +GF+L+ + + + ++ I+ AA P +L + ++ +LL +EDG
Sbjct: 306 GTALLMGMGILAGFLLFILSELSAAIAEAAIVPVGLAAWAPALLAVLFAVTLLLYREDG 364
>gi|52425603|ref|YP_088740.1| hypothetical protein MS1548 [Mannheimia succiniciproducens MBEL55E]
gi|52307655|gb|AAU38155.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 356
Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats.
Identities = 72/363 (19%), Positives = 138/363 (38%), Gaps = 10/363 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L LL + L +I E +G+ +Y + + +P
Sbjct: 1 MMNTLDRYIGKSILGAIFATLLTLVGLSGIIKFVEQFRSVGK-GSYDSMQAFLYTVLTMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELV+ ++ G S ++ + ++ L + T+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVVMQSAGFSRMKIGFAVMKTALPLVLLTMVIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + N FI K+ + + +
Sbjct: 120 EWGIPQTEQFARDMRSKAISGGSMLSVKNGIWAKDGND----FIYIKRATEDAN-LNNIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGF 237
+ + ++ A+ A N LK+V E Q I + + D
Sbjct: 175 IYSFNDNRQLQRVSHANKASYENGSWVLKQVNESQISADEIKTKNYLNRPWKTSLTPDKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
F+ + S S + +SF ++ + + E ++ + P+ + M ++A S
Sbjct: 235 GIFTVKPTSLSISGLSSYISFLKETGQ-DSKKFELTYWRKLFQPISVGVMMMLALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + GI GF+ Y I I + P+ AL+P +L + ++ +L +
Sbjct: 294 PLRSVTAGARIVTGICFGFVFYVINEIFGPLSLVYNVAPIIGALMPSLLFLVITWWLLSR 353
Query: 358 KED 360
K D
Sbjct: 354 KRD 356
>gi|74314741|ref|YP_313160.1| hypothetical protein SSON_4447 [Shigella sonnei Ss046]
gi|73858218|gb|AAZ90925.1| conserved hypothetical protein [Shigella sonnei Ss046]
Length = 361
Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 138/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 5 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 64 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ GE++ + Q G + W + + F+ +++ + +
Sbjct: 124 WVASQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELGGISI 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 179 YAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 238
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 239 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 294
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 295 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 354
Query: 353 LILLQK 358
+L++K
Sbjct: 355 WLLMRK 360
>gi|332991779|gb|AEF01834.1| lipopolysaccharide ABC transporter permease [Alteromonas sp. SN2]
Length = 353
Score = 218 bits (557), Expect = 7e-55, Method: Composition-based stats.
Identities = 61/361 (16%), Positives = 135/361 (37%), Gaps = 16/361 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + L T L + L +I E ++GE +Y + + +P
Sbjct: 1 MFKILDLYIARTLLGTVTVTLSVLIGLSALIKFVEQLRKVGE-GDYDMMVAFLYVVLSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++Q P TL+ ++ L SELV+ +A G+S W ++ + + ++ + + V
Sbjct: 60 RDLEQFFPMATLLGGLIGMGVLASNSELVVMQAAGMSRWNIIVSTMKSATIMILLVMAVG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ E ++ + G S+ + W + + F+ ++L + +D
Sbjct: 120 EWVTPFSESKAKEIRTEAISGGSLFSSEQLVWAK----DGEHFVSIGEVLSRDS-LKDIN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST------TLNIPIKM 234
+ + A + +L V ++ + ++ + P K+
Sbjct: 175 IFDFNDDLSLESITYAKSGNFDGSEWRLSDVDVTRFSETAVTLDNEKSMQWNSTLTPDKL 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
E + + + ++ + + R E + I+ P+ + M L+A S
Sbjct: 235 GIVAVKPEALSISGLLDYVGYLANNGQ----DPSRYELALWRKILQPVSVGVMLLMALSF 290
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS V G+ +GF + + + + P AL+P +L +++ ++
Sbjct: 291 IFGPLRSVTMGARVIMGVLTGFGFFILNEVFGPLSLVYQIPPFLGALLPSLLFAAIAAIM 350
Query: 355 L 355
L
Sbjct: 351 L 351
>gi|260779400|ref|ZP_05888291.1| putative membrane protein [Vibrio coralliilyticus ATCC BAA-450]
gi|260604490|gb|EEX30790.1| putative membrane protein [Vibrio coralliilyticus ATCC BAA-450]
Length = 356
Score = 218 bits (557), Expect = 7e-55, Method: Composition-based stats.
Identities = 69/367 (18%), Positives = 136/367 (37%), Gaps = 21/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E ++G+ +Y + + +P
Sbjct: 1 MFKILDLYIGRTIIATTSLVLATFVGLSAIIKYVEQLRKVGQ-GSYDLLQALFYVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + L+
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGYSKLDIGLSVLKTAVPLMVLVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N FI K+ + +
Sbjct: 120 QWGAPQAQKMARDLRAFTTSGGAIMSVRTGVWARDAND----FIFIGKVEDD--KLYGLS 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKV--------VEYQYGRIPIDKNSTTLNIP 231
+ ++ A + ++ +K V VE +P + +T+L P
Sbjct: 174 MWRYNDDKQLESVVHAAEVDYLSDNTWVMKDVQLTEMADEVEITKTSLPEYRWTTSL-AP 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + Y+ + + S + R E + + P + M L+A
Sbjct: 233 DKLAVVTVKPEELSLSGLYDYVTYLKASEQ----DASRYELALWRKVTQPFSIAVMMLMA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y + PV A++P I+ ++++
Sbjct: 289 LSFIFGPLRSVTMGARILSGVVAGFTFYISSEFFGPLSLVYSIPPVFGAVMPSIVFLTVA 348
Query: 352 ILILLQK 358
+ +L +K
Sbjct: 349 LALLRRK 355
>gi|82546485|ref|YP_410432.1| hypothetical protein SBO_4178 [Shigella boydii Sb227]
gi|81247896|gb|ABB68604.1| conserved hypothetical protein [Shigella boydii Sb227]
Length = 361
Score = 218 bits (557), Expect = 7e-55, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 5 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 64 DVQTFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 124 WVAPLGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELGGISI 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 179 YAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 238
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 239 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 294
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 295 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 354
Query: 353 LILLQK 358
+L++K
Sbjct: 355 WLLMRK 360
>gi|309784105|ref|ZP_07678747.1| conserved hypothetical protein [Shigella dysenteriae 1617]
gi|308928098|gb|EFP73563.1| conserved hypothetical protein [Shigella dysenteriae 1617]
Length = 360
Score = 218 bits (557), Expect = 8e-55, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 136/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WAAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+L++K
Sbjct: 354 WLLMRK 359
>gi|294492514|gb|ADE91270.1| putative permease [Escherichia coli IHE3034]
gi|307629338|gb|ADN73642.1| hypothetical protein UM146_21570 [Escherichia coli UM146]
gi|315288387|gb|EFU47785.1| putative inner membrane protein [Escherichia coli MS 110-3]
gi|323950669|gb|EGB46547.1| inner membrane protein yjgQ [Escherichia coli H252]
gi|323955548|gb|EGB51312.1| inner membrane protein yjgQ [Escherichia coli H263]
Length = 360
Score = 218 bits (557), Expect = 8e-55, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNENRRLQSVRYAAAAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+L++K
Sbjct: 354 WLLMRK 359
>gi|163803713|ref|ZP_02197573.1| putative permease [Vibrio sp. AND4]
gi|159172496|gb|EDP57361.1| putative permease [Vibrio sp. AND4]
Length = 356
Score = 218 bits (557), Expect = 9e-55, Method: Composition-based stats.
Identities = 66/366 (18%), Positives = 127/366 (34%), Gaps = 19/366 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L Y + + TT L + L +I E ++G Y + +P
Sbjct: 1 MFKLLDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGR-GTYDLMHALYFVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N FI K+ + +
Sbjct: 120 QWGAPEAQKMARDLRAFALSGGSIVSMRAGVWARDAND----FIFIGKVEDD--KLYNLN 173
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP-------IDKNSTTLNIPI 232
D+ K+ A+ ++ ++ V T P
Sbjct: 174 MWRFDEDKKLDKVIFAEEVDYQQDNNWLMRYVQVTDMENENAITKRDIEQMEWHTSLAPD 233
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ E+ + Y+ + + + + R E F+ + PL + M L+A
Sbjct: 234 KLAVVTVKPEELSLSGLYDYVSYLKATEQ----DASRYELAFWRKLSQPLSIAVMMLMAL 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + G+ +GF Y + PV AL P ++ ++++I
Sbjct: 290 SFVFGPLRSVTMGARILSGVVAGFSFYISSEFFGPLSLVYGIPPVFGALAPSLVFLAIAI 349
Query: 353 LILLQK 358
+L +K
Sbjct: 350 ALLRRK 355
>gi|91213818|ref|YP_543804.1| hypothetical protein UTI89_C4869 [Escherichia coli UTI89]
gi|117626606|ref|YP_859929.1| hypothetical protein APECO1_2132 [Escherichia coli APEC O1]
gi|237703938|ref|ZP_04534419.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|91075392|gb|ABE10273.1| hypothetical protein UTI89_C4869 [Escherichia coli UTI89]
gi|115515730|gb|ABJ03805.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|226901850|gb|EEH88109.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
Length = 361
Score = 218 bits (557), Expect = 9e-55, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 5 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 64 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 124 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELGGISI 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 179 YAFNENRRLQSVRYAAAAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 238
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 239 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 294
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 295 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 354
Query: 353 LILLQK 358
+L++K
Sbjct: 355 WLLMRK 360
>gi|82779328|ref|YP_405677.1| hypothetical protein SDY_4286 [Shigella dysenteriae Sd197]
gi|81243476|gb|ABB64186.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
Length = 361
Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 136/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 5 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 64 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A GE++ + Q G + W + + F+ +++ + +
Sbjct: 124 WAAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELGGISI 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 179 YAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 238
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 239 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 294
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 295 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 354
Query: 353 LILLQK 358
+L++K
Sbjct: 355 WLLMRK 360
>gi|330873093|gb|EGH07242.1| hypothetical protein PSYMP_02386 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330963183|gb|EGH63443.1| hypothetical protein PSYAC_00745 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 353
Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 126/360 (35%), Gaps = 19/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L L + LV + + + + Y++ P +
Sbjct: 4 LDRYIGKSVFLAILAVLGIILGLVSLFAFIDEMGDIND--TYTLLDALSYVMMTAPRRVY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ L +SEL I RA G+SI +++ + +LL + VLV +A
Sbjct: 62 DTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + +GD Q + W + + FI + P + T
Sbjct: 122 PYAENQAQAARSLAQGSGDAQSARHGLWHRQGDE----FIHINTVQPNGLML-GVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-------IPIDKNSTTLNIPIKMDGF 237
D + ++ A A D +LK V + P ++ +L+ P +
Sbjct: 177 DDQRHMLTSSFAKEAHFKTDYWELKDVSTTHFKEGRTEVVNAPDERWDVSLS-PQLLSTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + ++ SN R F+ ++ P + VA+ L+A S
Sbjct: 236 IMPPESLSISGLWSYAHYLADQGLSNG----RYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF I ++ P+ A LIP + +L +
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLIPAAACAFAGLYLLRR 351
>gi|308050967|ref|YP_003914533.1| permease YjgP/YjgQ family protein [Ferrimonas balearica DSM 9799]
gi|307633157|gb|ADN77459.1| permease YjgP/YjgQ family protein [Ferrimonas balearica DSM 9799]
Length = 354
Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats.
Identities = 65/361 (18%), Positives = 132/361 (36%), Gaps = 10/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + T+ LL L +I + +G +++ A+ VP
Sbjct: 1 MIRILDLYIARTIINTSALCLLVLTGLSGLIKFVDQLRLVGR-GDFTTWDVALYVLFLVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P ++ ++ L +SELV+ +A G+S + + ++ L I +L+
Sbjct: 60 RDIEMFFPIAAMLGALIGMGMLASSSELVVMQAAGLSRLNIAASVMKTAVPLMIIAMLIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E+ ++ Q G S W + ++F+ ++ + + T
Sbjct: 120 EYVAPVSEQTAREMRAQKTSGGSLISSSTGTWAK----DGELFVNITEV-QDARTLKGVT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GRIPIDKNSTTLNIPIKMDGF 237
D N + A+ + +L V E +D++ + +
Sbjct: 175 IYRFDGDNLLREITFAEQGLYDGKAWRLLDVTETDLTDEQVSTLDRDELRWPSSLTPEKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q + + S +I + + K+N R E + + P+ + M ++A S
Sbjct: 235 QVVTVKPEGLSIEGLIDYVDYL-KANRQDTTRYELALWRKVAQPITVGVMMMLALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A++P IL + +L +
Sbjct: 294 PLRTVTMGARVLLGVITGFSFYIANEIFGPMSLVMGLPTFLGAMLPSILFAIAAFALLQR 353
Query: 358 K 358
+
Sbjct: 354 R 354
>gi|315617676|gb|EFU98282.1| conserved hypothetical protein [Escherichia coli 3431]
Length = 360
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 70/366 (19%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAMGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WIAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNENRRLQSVRYAASAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFVISL 353
Query: 353 LILLQK 358
+L++K
Sbjct: 354 WLLMRK 359
>gi|209921759|ref|YP_002295843.1| hypothetical protein ECSE_4568 [Escherichia coli SE11]
gi|209915018|dbj|BAG80092.1| conserved hypothetical protein [Escherichia coli SE11]
Length = 360
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDEEFG-GISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+L++K
Sbjct: 354 WLLMRK 359
>gi|113460663|ref|YP_718729.1| permease [Haemophilus somnus 129PT]
gi|112822706|gb|ABI24795.1| conserved permease [Haemophilus somnus 129PT]
Length = 356
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 81/366 (22%), Positives = 140/366 (38%), Gaps = 16/366 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L LL + L +I E +G+ Y + + + +P
Sbjct: 1 MMNTLDRYIGKNILGAILATLLMLVGLSAIIKFVEQFRSIGK-GTYDVIQATLFTLLTMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ +++ NL SEL++ ++ G S +++ + ++ L + T+++
Sbjct: 60 KDIETFFPMAALLGSLIALGNLASRSELIVIQSAGFSRFRIGLAVMKTALPLMLITMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E D+ + G W + SN FI +I + D
Sbjct: 120 EWGIPQTEHFARDMRAKAISGGSMLSVKNSIWARDSND----FIYVGRITND-IRLNDIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK------NSTTLNIPIKM 234
+ D K ++ A+ A + K KL + + Q I N +T P K+
Sbjct: 175 IYSFDDKRQLKQVTHANQASFEHGKWKLSGINQSQIFADEIKTINRLKDNWSTTLTPDKL 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ Y IK M + + R E F+ + P+ + M ++A S
Sbjct: 235 GIASLRPTSLSMTGLYNYIKFMKETGQ----DAKRFELTFWQKVFQPVSVAVMMMLALSF 290
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS + GIF GF+ Y I I+ + V AALIP +L + L +
Sbjct: 291 IFGSLRSVTAGARIVTGIFFGFLFYVINEILGRLSLLYDIPIVLAALIPSLLFMILIWWL 350
Query: 355 LLQKED 360
L +K +
Sbjct: 351 LNRKRE 356
>gi|300935934|ref|ZP_07150887.1| putative inner membrane protein [Escherichia coli MS 21-1]
gi|300458870|gb|EFK22363.1| putative inner membrane protein [Escherichia coli MS 21-1]
Length = 360
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGISPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+L++K
Sbjct: 354 WLLMRK 359
>gi|269963273|ref|ZP_06177605.1| Predicted permease [Vibrio harveyi 1DA3]
gi|269831988|gb|EEZ86115.1| Predicted permease [Vibrio harveyi 1DA3]
Length = 356
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 66/366 (18%), Positives = 126/366 (34%), Gaps = 19/366 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L Y + + TT L + L +I E ++G Y + +P
Sbjct: 1 MFKLLDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGR-GAYDLMHALYFVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N FI K+ +
Sbjct: 120 QWGAPEAQKMARDLRAFALSGGSIVSVRAGVWARDAND----FIFIGKVEDD--KLYGLN 173
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPI-------DKNSTTLNIPI 232
D+ + A+ ++ ++ V + T P
Sbjct: 174 MWRFDEDKNLDKVIFAEEVDYQQDNNWLMRYVQITDMENENVITKRDLEQMEWHTSLAPD 233
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ E+ + Y+ + + S + R E F+ + PL + M L+A
Sbjct: 234 KLAVVTVKPEELSLSGLYDYVTYLKASEQ----DASRYELAFWRKLSQPLSIAVMMLMAL 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS V G+ +GF Y + PV AL P ++ +++++
Sbjct: 290 SFVFGPLRSVTMGARVLSGVVAGFTFYISSEFFGPLTLVYGIPPVFGALAPSLVFLAIAV 349
Query: 353 LILLQK 358
+L +K
Sbjct: 350 SLLRRK 355
>gi|28868484|ref|NP_791103.1| hypothetical protein PSPTO_1273 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213968382|ref|ZP_03396526.1| membrane protein [Pseudomonas syringae pv. tomato T1]
gi|301384648|ref|ZP_07233066.1| hypothetical protein PsyrptM_18507 [Pseudomonas syringae pv. tomato
Max13]
gi|302058899|ref|ZP_07250440.1| hypothetical protein PsyrptK_02847 [Pseudomonas syringae pv. tomato
K40]
gi|302133012|ref|ZP_07259002.1| hypothetical protein PsyrptN_16559 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28851722|gb|AAO54798.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213927020|gb|EEB60571.1| membrane protein [Pseudomonas syringae pv. tomato T1]
gi|331015231|gb|EGH95287.1| hypothetical protein PLA106_04712 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 353
Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 126/360 (35%), Gaps = 19/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L L + LV + + + + Y++ P +
Sbjct: 4 LDRYIGKSVFLAILAVLGIILGLVSLFAFIDEMADIND--TYTLVDALSYVMMTAPRRVY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ L +SEL I RA G+SI +++ + +LL + VLV +A
Sbjct: 62 DTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWSVMKPMLLLMVAGVLVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + +GD Q + W + + FI + P + T
Sbjct: 122 PYAENQAQAARSLAQGSGDAQSARHGLWHRQGDE----FIHINTVQPNGLML-GVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-------IPIDKNSTTLNIPIKMDGF 237
D + ++ A A D +LK V + P ++ +L+ P +
Sbjct: 177 DDQRHMLTSSFAKEAHFKTDYWELKDVSTTHFKEGRTEVVNAPDERWDVSLS-PQLLSTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + ++ SN R F+ ++ P + VA+ L+A S
Sbjct: 236 IMPPESLSISGLWSYAHYLADQGLSNG----RYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF I ++ P+ A LIP + +L +
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLIPAAACAFAGLYLLRR 351
>gi|330962174|gb|EGH62434.1| hypothetical protein PMA4326_26817 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 353
Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats.
Identities = 73/360 (20%), Positives = 129/360 (35%), Gaps = 19/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L L L + LV + + + + Y++ P +
Sbjct: 4 LDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISD--TYTLPDALSYVMMTAPRRVY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ +L +SEL I RA G+SI +++ + +LL I VLV +A
Sbjct: 62 DTLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMIAGVLVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + GD Q + W + + FI + P + T
Sbjct: 122 PYAENKAQAARSLAQGLGDAQSAKHGLWHRQ----GEEFIHINTVQPNGLML-GVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNSTTLNIPIKMDGF 237
D + ++ A A D +LK V + P ++ +L+ P +
Sbjct: 177 DDQRHMLTSSFAKEAHFKTDYWELKDVTTTHFNDGRTEVINTPDERWDVSLS-PQLLSTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + ++ SN R F+ ++ P + VA+ L+A S
Sbjct: 236 IMPPESLSISGLWSYAHYLADQGLSNG----RYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF I ++ P+ A L+P + +L+L +
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLLPAGVCALAGVLLLRR 351
>gi|152973139|ref|YP_001338285.1| putative transmembrane protein, transport [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238892751|ref|YP_002917485.1| putative transport system permease component [Klebsiella pneumoniae
NTUH-K2044]
gi|330016469|ref|ZP_08308442.1| lipopolysaccharide export system permease protein LptG [Klebsiella
sp. MS 92-3]
gi|150957988|gb|ABR80018.1| putative transmembrane protein, transport [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238545067|dbj|BAH61418.1| putative transport system permease component [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|328528830|gb|EGF55773.1| lipopolysaccharide export system permease protein LptG [Klebsiella
sp. MS 92-3]
Length = 360
Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats.
Identities = 71/366 (19%), Positives = 135/366 (36%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLKKSGQ-GSYDALGAGLYTILSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRLQVALAVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + F+ +++ N +
Sbjct: 123 WVAPQGEQMARNYRAQQMYGGSLLSTQQGLWAK----DGHNFVYIERV-KGNDELGGVSI 177
Query: 182 ITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQY-------GRIPIDKNSTTLNIPI 232
+ + ++ + A A N +L +V E G + T P
Sbjct: 178 YAFNPERRLQSVRYAASAKFDSENKVWRLSQVDESDLTDPKQVTGSQMVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DPGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFIFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
++++K
Sbjct: 354 WLMMRK 359
>gi|170767103|ref|ZP_02901556.1| putative permease [Escherichia albertii TW07627]
gi|170124541|gb|EDS93472.1| putative permease [Escherichia albertii TW07627]
Length = 360
Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats.
Identities = 70/366 (19%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMMLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAMGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WIAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNENRRLQSVRYAASAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFVISL 353
Query: 353 LILLQK 358
+L++K
Sbjct: 354 WLLMRK 359
>gi|158521443|ref|YP_001529313.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
gi|158510269|gb|ABW67236.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
Length = 359
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 61/359 (16%), Positives = 136/359 (37%), Gaps = 12/359 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY LK + +++ +D E + +SR AV ++PLI+
Sbjct: 3 ILSRYIIAEILKALAVVMAVVIVIYVAVDFFEKIDDFLG-AGVPLSRMAVFFLFKIPLIV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q P L+ ++VVF +NR +E+ ++ GI L P V + + ++V +
Sbjct: 62 VQTAPVGVLIASLVVFGLMNRRNEVTALKSSGIGPASLFKPAAVVGVGCCVLLLIVSEIV 121
Query: 124 ATSGEKIGIDL-IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ +QQ + W++ + + P D
Sbjct: 122 VPRTISRANYIWLQQVRQKTSSVDQKNNIWLK----DDRTIVHIRHYQPREKKAFDVVLH 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDGF 237
+D+ ++ R DA + + L+ V++ Q+ ++ + + + + +
Sbjct: 178 DLDEGFRVTRRIDAARGLYDGGQWTLRNVLDQQFDVAGNVQLVEFRERLKIELDLLPEDL 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ +E F +++ ++ + + + + P + + M LI A++ +
Sbjct: 238 DRAAESADEMGFVQLLDRIRQVER-QGYSVVSHRVDLHAKLSFPFVCLLMGLIGAALGIM 296
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
AYG+ + F+ + + S G G+L P+ AA ++ + ++L
Sbjct: 297 GRTRGGITANAAYGVGASFVYWIFHSFCISLGYGGMLPPLIAAWSANLVFGGATAAVIL 355
>gi|260596297|ref|YP_003208868.1| lipopolysaccharide ABC transporter permease [Cronobacter turicensis
z3032]
gi|260215474|emb|CBA27593.1| Lipopolysaccharide export system permease protein lptG [Cronobacter
turicensis z3032]
Length = 359
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 74/366 (20%), Positives = 136/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + T + L + L +I + + GE +Y+ VP
Sbjct: 3 FSVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLKKTGE-GSYTALGAGTYTLLSVPK 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L IFT+ +
Sbjct: 62 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVAASVMKTAIPLVIFTMAIGE 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ +L Q G + W + F+ +++ EN +
Sbjct: 122 WVAPQGEQMARNLRAQQMYGGSLLSTQQGMWAK----DGSNFVYIERVKGEN-ELGGISI 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
+ K ++ + A A + +L +V E S TL P
Sbjct: 177 YAFNDKRRLESVRYAASAKFDAEHKLWRLSQVDESNLKNPQQITGSQTLTGTWKTNLTPD 236
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + + S + R + + I+ PL + M L+A
Sbjct: 237 KLGVVALDPDALSISGLRNYVTYLKASGQ----DASRYQLNMWSKILQPLSVAVMMLMAL 292
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 293 SFIFGPLRSVPMGVRVVTGISFGFIFYVLDQIFGPLSLVYGIPPIIGALLPSASFFLISL 352
Query: 353 LILLQK 358
+L+++
Sbjct: 353 WLLMKR 358
>gi|91228858|ref|ZP_01262763.1| putative permease [Vibrio alginolyticus 12G01]
gi|269966357|ref|ZP_06180443.1| Predicted permease [Vibrio alginolyticus 40B]
gi|91187596|gb|EAS73923.1| putative permease [Vibrio alginolyticus 12G01]
gi|269829034|gb|EEZ83282.1| Predicted permease [Vibrio alginolyticus 40B]
Length = 356
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 126/366 (34%), Gaps = 19/366 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E ++G Y ++ VP
Sbjct: 1 MFKILDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGR-GVYDLTHALYFVLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L I + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMIVVMALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N FI K+ +
Sbjct: 120 QWGAPEAQKMARDLRAFAISGGSIVSVRSGVWARDAND----FIFIGKVEDD--KLYALN 173
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNSTTLNI-------PI 232
D + A+ ++ ++ V + + P
Sbjct: 174 MWRFDDDKNLQKVIFAEEVDYQQDNNWLMRYVQITDMENENVISKQDIEQMEWHTSLAPD 233
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ E+ + Y+ + + S + R E F+ + PL + M L+A
Sbjct: 234 KLAVVTVKPEELSLSGLYDYVTYLKASEQ----DASRYELAFWRKLTQPLSIAVMMLMAL 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS V G+ +GF Y + PV AL P ++ ++++I
Sbjct: 290 SFVFGPLRSVTMGARVLSGVVAGFTFYISSEFFGPLSLVYGISPVFGALAPSLVFLAIAI 349
Query: 353 LILLQK 358
+L +K
Sbjct: 350 ALLRRK 355
>gi|253997572|ref|YP_003049636.1| permease [Methylotenera mobilis JLW8]
gi|253984251|gb|ACT49109.1| permease YjgP/YjgQ family protein [Methylotenera mobilis JLW8]
Length = 356
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 66/361 (18%), Positives = 135/361 (37%), Gaps = 16/361 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY FK L L + + DL + +G +Y +S+ + A P
Sbjct: 2 KIITRYLFKEITVNVLLITLALIAMFSFFDLIQELESLGH-GSYGLSKILLFVALSAPGH 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +++P LV + L R SEL++ R GIS++ L + +L + T L+
Sbjct: 61 VYEVMPVAVLVGCMYSLGQLARYSELIVLRVSGISLYSLAATLIKIGMLFTVITFLIGEL 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I EK+ + + D+ Q W++ F+ +++L + + +
Sbjct: 121 ITPLSEKMAQRIRIKATDSVIVQDFKSGLWVK----DGHSFVNVEEVLADTTLL-NIHIY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST------TLNIPIKMDG 236
D K + A + +++ LK V + + +L P ++
Sbjct: 176 EFDDKFNLRTVSHAHKGLYEDEQWHLKSVSQTHLDKDSNHVEHLDKATWRSLIRPELLNV 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E+ ++ + Y I ++ + + R + + +V PL + M ++A +
Sbjct: 236 LLVLPEKMSAWNLYAYIDHLAANKQK----TTRYKMALWAKLVYPLASLVMVILALPFAF 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R+ + GI G + T+ G P +A+ P L + + +L
Sbjct: 292 IQQRATGASTKIFIGIMLGILYQTLNQTFVHLGLLNDWAPAFSAITPTALFLLGGLAMLH 351
Query: 357 Q 357
Sbjct: 352 H 352
>gi|206575795|ref|YP_002240776.1| putative permease [Klebsiella pneumoniae 342]
gi|288937432|ref|YP_003441491.1| permease YjgP/YjgQ family protein [Klebsiella variicola At-22]
gi|290512173|ref|ZP_06551540.1| permease [Klebsiella sp. 1_1_55]
gi|206564853|gb|ACI06629.1| putative permease [Klebsiella pneumoniae 342]
gi|288892141|gb|ADC60459.1| permease YjgP/YjgQ family protein [Klebsiella variicola At-22]
gi|289775168|gb|EFD83169.1| permease [Klebsiella sp. 1_1_55]
Length = 360
Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats.
Identities = 71/366 (19%), Positives = 135/366 (36%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLKKSGQ-GSYDALGAGLYTILSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRLQVALAVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + F+ +++ N +
Sbjct: 123 WVAPQGEQMARNYRAQQMYGGSLLSTQQGLWAK----DGHNFVYIERV-KGNDELGGVSI 177
Query: 182 ITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQY-------GRIPIDKNSTTLNIPI 232
+ + ++ + A A N +L +V E G + T P
Sbjct: 178 YAFNPERRLESVRYAASAKFDSENKVWRLSQVDESNLTDPKQVTGSQMVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DPGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFIFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
++++K
Sbjct: 354 WLMMRK 359
>gi|308272620|emb|CBX29224.1| hypothetical protein N47_J02050 [uncultured Desulfobacterium sp.]
Length = 356
Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats.
Identities = 66/366 (18%), Positives = 135/366 (36%), Gaps = 18/366 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ I+ RY K LK + + + V+D + E + +++P
Sbjct: 2 LMSIIDRYLTKEILKYFCIIIAAIIGIYIVVDFFDETEIFFE-SGLAFPTAFFCFISKMP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I Q IP L+ +V F +++ +E+V ++ GISI+ LL P ++ + + +
Sbjct: 61 --IAQFIPLSVLLSILVTFGLMSKNNEIVAIKSGGISIYHLLRPILLIGSVFFCVVIFLS 118
Query: 121 NPIATSGEKIGIDLIQQW-KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ + ++ Q + + W++ N + +
Sbjct: 119 EAVVPITKSKAEKILTQANRKKFAMALKEKDIWIKGHN----LITHIEYYDSSKKTIHGI 174
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN------STTLNIPIK 233
D K +++ R D + + L ++E + + + + + P
Sbjct: 175 KLYFFDDKFRVVRRIDCEKGVFNQGNWILYDIIEQKLDKNNSEISFHKQLIEHLVFSPDD 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ SE ++ Y+ IKK+ S + T FY + P + + M +
Sbjct: 235 IGVVAVTSESMSAFELYDYIKKIE----SEGYDATTYRTDFYAKLSFPFICIIMCFVGTG 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ + + YGI + F + S G+ GIL P AALIP ++ + I
Sbjct: 291 IAFRLGAKESLPVNIVYGIGAAFSYWVFFGFCISLGEGGILNPFFAALIPNLVFLGFGIF 350
Query: 354 ILLQKE 359
+L E
Sbjct: 351 TVLNTE 356
>gi|288572984|ref|ZP_06391341.1| permease YjgP/YjgQ family protein [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288568725|gb|EFC90282.1| permease YjgP/YjgQ family protein [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 365
Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats.
Identities = 56/362 (15%), Positives = 135/362 (37%), Gaps = 8/362 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P IL R+ K + L+ +L +++ DL M S+S L ++P
Sbjct: 3 PRILDRFILKELGSSFLFGVLTFTVILVAGDLLFKIADMLIEKGVSLSTVLKLFVYKLPS 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P L+ ++ F L+ SE+V +A GIS ++ P ++G+ L+ I +
Sbjct: 63 VVVLTLPMSCLLSTLLSFGRLSSNSEIVALKASGISFQRIARPVLLGASLVAISAFFMNE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ-DIFIGAKKILPENHIWEDFT 180
+ + +++ +++ + + + I ++ E+
Sbjct: 123 TVVPIANRAAENILMYDVVKQKPTLLRERMFLKDESGGKLNRVIYVGRLRTRKGSMENVL 182
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP-----IDKNSTTLNIPIKMD 235
D ++ AD + L + + L + +
Sbjct: 183 VQEFD-DGRLSRITTADEGNWSDGVWTLSDGKAFSVDKEGKVGFLFGFKEQRLPLNLTPA 241
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ S + S ++ + + K+ + ++ I IP + + LI A++
Sbjct: 242 QVARSSLKPDEMSLSQLREHIEI-MKAQGANLIPLWVSYHLHIAIPWASLVLALIGAALG 300
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ R + + F Y ++++ ++ G+SG + P+ AA + ++ + L+
Sbjct: 301 VRPQRRGGMGVGFGLSVLIVFAYYVVMSMGRALGESGHIPPLVAAWLANVVFLGFGGLLT 360
Query: 356 LQ 357
L+
Sbjct: 361 LR 362
>gi|71277954|ref|YP_267493.1| putative permease [Colwellia psychrerythraea 34H]
gi|71143694|gb|AAZ24167.1| putative permease [Colwellia psychrerythraea 34H]
Length = 355
Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 69/358 (19%), Positives = 135/358 (37%), Gaps = 16/358 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ Y + TT L + + +I E +G NY ++ A+ VP +
Sbjct: 3 IIDFYIGRVIASTTFITLAVFVSVSGIIKFVEQMRAIGR-GNYDLAHAALYVLYAVPRDV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ ++ L SEL++ +A G+S ++ + ++LL I ++ + +
Sbjct: 62 EVFFPMSALIGGLIGIGMLASNSELIVMQAAGLSRLDIIKSVMKTAVLLIIVSMAIGEWL 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A SGE ++ Q G + W + D F+ ++L +
Sbjct: 122 APSGEAKAREIRAQAISGGSLIAAKNGVWAK----DGDYFVNIGEVLDRGQ-LKKVQIYG 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN------IPIKMDGF 237
+ + KI A AI + L V E+ I S + P K+
Sbjct: 177 FNDELKIDSWLSAKSAIYQDKSWLLTDVEEFSLTENEIITKSHSQKIWNSSLTPKKLGVV 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + R + + + + + R + F+ I+ PL + M L+A S
Sbjct: 237 TVTPESLSLRGLIDYLDYLEANEQ----DPSRYKLAFWRKIMQPLTVAVMLLVALSFIFG 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS + G+F+G + + ++ S L P+ A+IP + + ++ +
Sbjct: 293 PLRSVSMGARIMMGVFTGILFFISNEVLGSLSLVYQLPPILGAMIPSLFFVGIAWYFI 350
>gi|261211061|ref|ZP_05925350.1| putative membrane protein [Vibrio sp. RC341]
gi|260839562|gb|EEX66173.1| putative membrane protein [Vibrio sp. RC341]
Length = 356
Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats.
Identities = 72/367 (19%), Positives = 139/367 (37%), Gaps = 21/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIITLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N FI K+ +N
Sbjct: 120 EWGAPQAQKLARDMRAFATSGGAIMSVRTGVWARDAND----FIFIAKV--DNEQLIGMN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKV--------VEYQYGRIPIDKNSTTLNIP 231
D+ K+ A+ I N++ +K V +E +P + T+L P
Sbjct: 174 LWRFDENKKLSTVIFAEEVDYIGNNEWLMKDVHLTRMVNDIEISKEALPEYRWHTSL-AP 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + + + + S + R E + + P+ + M L+A
Sbjct: 233 DKLAVVTVKPEELSLSGLSDYVHYLKASEQ----DASRYELALWRKVTQPISIAVMMLMA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y L P+ A+ P ++ ++++
Sbjct: 289 LSFIFGPLRSVTMGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGAIAPSLVFLTIA 348
Query: 352 ILILLQK 358
+ +L +K
Sbjct: 349 LGLLGRK 355
>gi|221133511|ref|ZP_03559816.1| predicted permease [Glaciecola sp. HTCC2999]
Length = 354
Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats.
Identities = 69/364 (18%), Positives = 136/364 (37%), Gaps = 16/364 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I+ Y + L T L + L +I E ++GE +Y + + +P
Sbjct: 1 MFSIIDIYIARTLLSTIFVTLSTLVGLSALIKFVEQLRKVGE-GDYDLIVAGLFVFFSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+Q P TL+ ++ L SEL++ +A G+S W ++ + ++++ +LV
Sbjct: 60 RDIEQFFPMATLLGGLIGMGVLASNSELIVMQASGMSKWNIIQSAMKCAVVMVCIILLVG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ E + + G S+ I W + + F+ + + + D T
Sbjct: 120 EFLTPVSEAKAKQIRTEALSGGQVFTSNKIVWTKDGSD----FVSIGNVFNQEN-LGDVT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN------IPIKM 234
+ + A A + L+ V I N +L P K+
Sbjct: 175 IYKFNDDLDLTQIIAAKRATFVEESWALQDVHITYINDQRISTNRISLTEWRAALTPDKL 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
E + + YE + + + + + R E + I+ P+ + M L+A S
Sbjct: 235 SVATVKPEALSIQGLYEYVGYLQNNQQ----DSTRYELAMWRKILQPVSVCVMLLMAFSF 290
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS + G +GF + + F L P+ A++P L +++L+
Sbjct: 291 VFGSLRSTTMGSRIIVGTLTGFSFFIANEVFGPFAMVYNLPPMLGAIVPSALFAGVAVLL 350
Query: 355 LLQK 358
L ++
Sbjct: 351 LRRQ 354
>gi|197335786|ref|YP_002155171.1| permease YjgP/YjgQ family protein [Vibrio fischeri MJ11]
gi|197317276|gb|ACH66723.1| permease YjgP/YjgQ family protein [Vibrio fischeri MJ11]
Length = 358
Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats.
Identities = 66/367 (17%), Positives = 131/367 (35%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + T+ L+ + L +I E ++G Y + +P
Sbjct: 1 MFKILDWYIGRTIIATSALCLVTLVGLSSIIKYVEQLRKVGR-GTYDLLDALYFVILSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + +I L + + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLAASSELVVMQAAGYSKLSIGVSVLKTAIPLMLMVMALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G+ W + ++ FI ++ T
Sbjct: 120 QWGAPQAQKMARDLRTFEVSGGNIAAVRAGVWAKDADD----FIYLARV-ENKEKLYGVT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDK-------NSTTLNIP 231
D ++ + A A D ++ V Q + + +T P
Sbjct: 175 VWQFDDNQELNNVIFARTATYQAAQDDWEMNDVSITQMKDKAVISEKKVDSLDWSTTLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + Y+ + + S R E F+ + P+ + M L+A
Sbjct: 235 DKLAVVTVKPEEQSLTGLYDYVNYLKDSE----LDASRYELAFWRKALQPISVAVMMLLA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y + + P+ AL P ++ ++++
Sbjct: 291 LSFVFGPLRSVTMGARILSGVIAGFTFYISNEVFGPMTLVYNIHPIFGALGPSLVFLAVT 350
Query: 352 ILILLQK 358
+ +L +K
Sbjct: 351 VGLLNRK 357
>gi|311281180|ref|YP_003943411.1| permease YjgP/YjgQ family protein [Enterobacter cloacae SCF1]
gi|308750375|gb|ADO50127.1| permease YjgP/YjgQ family protein [Enterobacter cloacae SCF1]
Length = 360
Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats.
Identities = 74/366 (20%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K L T L L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTILTTILMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVAISVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ +L Q + W + +I ++I +
Sbjct: 123 WMAPQGEQMARNLRAQAMYGSSLLSTQQGMWAK----DGHNYIYIERI-KGADELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQY-------GRIPIDKNSTTLNIPI 232
+ + K ++ + A A DK +L +V E G + T P
Sbjct: 178 YSFNDKRRLQSVRYAASAKFDADKKVWRLSQVDESNLTNPLQITGSQTVSSTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + Y +K + S + R + + + PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLYNYVKYLKSSGQ----DPGRYQLNMWSKVFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVITGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSATFFLISL 353
Query: 353 LILLQK 358
+++++
Sbjct: 354 WLMIRR 359
>gi|59711022|ref|YP_203798.1| inner membrane protein [Vibrio fischeri ES114]
gi|59479123|gb|AAW84910.1| conserved inner membrane protein [Vibrio fischeri ES114]
Length = 358
Score = 215 bits (549), Expect = 6e-54, Method: Composition-based stats.
Identities = 67/367 (18%), Positives = 130/367 (35%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + T+ L+ + L +I E ++G Y + +P
Sbjct: 1 MFKILDWYIGRTIIATSALCLVTLVGLSSIIKYVEQLRKVGR-GTYDLLDALYFVILSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + +I L + + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLAASSELVVMQAAGYSKLSIGVSVLKTAIPLMLMVMALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G+ W + ++ FI ++ T
Sbjct: 120 QWGAPQAQKMARDLRTFEVSGGNIAAVRAGVWAKDADD----FIYLARV-ENKEKLYGVT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDK-------NSTTLNIP 231
D + + A A D K+ V Q + + +T P
Sbjct: 175 VWQFDDNQDLNNVIFARTATYQAAQDDWKMNDVSITQMKDKAVISEKKVDSLDWSTTLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + Y+ + + S R E F+ + P+ + M L+A
Sbjct: 235 DKLAVVTVKPEEQSLTGLYDYVNYLKDSE----LDASRYELAFWRKALQPISVAVMMLLA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y + + P+ AL P ++ ++++
Sbjct: 291 LSFVFGPLRSVTMGARILSGVIAGFTFYISNEVFGPMTLVYNIHPIFGALGPSLVFLAVT 350
Query: 352 ILILLQK 358
+ +L +K
Sbjct: 351 VGLLNRK 357
>gi|94495767|ref|ZP_01302347.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
gi|94425155|gb|EAT10176.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
Length = 366
Score = 215 bits (549), Expect = 6e-54, Method: Composition-based stats.
Identities = 63/357 (17%), Positives = 127/357 (35%), Gaps = 8/357 (2%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + +L T L ++++ +DL + P S ++ R P II +
Sbjct: 14 YMARLFLTRTFAVLAMLVVVLQTLDLLGNSGDILAYPGNSDAQLWHYVGLRAPQIIATFL 73
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS- 126
PF L+ +V+ LN+ SE++ +A G+S Q+L P V+ ++ + I + + I
Sbjct: 74 PFSVLLGTLVMLATLNQNSEIISMKAAGLSAHQILAPLVLAALGVSIISFVFNERIVVRS 133
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ + PW++ N + I A +
Sbjct: 134 TAALSAWEAVDYGPVPPDSGVKSNPWVRDGNNLVNAAIVAGR--GTAVQLRQVEIYNRI- 190
Query: 187 KNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFSEQ 243
N++ A + L+ ++ R + + I+ D F
Sbjct: 191 NNRLTTIVQAPKGHYDVASKSWVLEGARQFDVARGTVSNIGTVRFGRDIRPDQFTLARVD 250
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ +F+E+ + + E + + PL + M ++ + + +RS Q
Sbjct: 251 PDALTFHELEAAIGDLRDAG-RPTKELEGSLWHKLSGPLSALLMPILGSVAAFGLARSGQ 309
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ G+ GF + + G G PV AA P L + + +L + E+
Sbjct: 310 LFMRAVLGMALGFAYFVADNFSLAMGNLGAYPPVLAAWAPFFLFLLVGETVLFRTEE 366
>gi|301028101|ref|ZP_07191379.1| putative inner membrane protein [Escherichia coli MS 196-1]
gi|299878818|gb|EFI87029.1| putative inner membrane protein [Escherichia coli MS 196-1]
Length = 360
Score = 215 bits (549), Expect = 7e-54, Method: Composition-based stats.
Identities = 68/366 (18%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELGGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
++ ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + + L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVVMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
+L++K
Sbjct: 354 WLLMRK 359
>gi|212710412|ref|ZP_03318540.1| hypothetical protein PROVALCAL_01473 [Providencia alcalifaciens DSM
30120]
gi|212686832|gb|EEB46360.1| hypothetical protein PROVALCAL_01473 [Providencia alcalifaciens DSM
30120]
Length = 358
Score = 215 bits (549), Expect = 7e-54, Method: Composition-based stats.
Identities = 81/367 (22%), Positives = 144/367 (39%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L + L L + L +I E ++G+ +Y+ V VP
Sbjct: 1 MFGVLDRYIGRTILNSILMTLFLLVSLSGIIKFVEQLRKVGD-GDYTAMSAGVFTLLTVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L SELV+ +A G + Q+ + +I L I T+++
Sbjct: 60 KDIDIFFPMAALLGALLGLGALASRSELVVMQASGFTRLQIAMSVMKTAIPLVIVTMIMG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA +GE+ + + +D W + ++ FI ++I + +D +
Sbjct: 120 EWIAPAGEQWARNYRAEKIVGSSLVVTDSGMWAKDAHD----FIYIQRI-KDASTIQDVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
D K+ A DK L +V E G S L P
Sbjct: 175 IYRFDDHRKLESVMFAARGTYDADKKLWVLSQVQESILGSQQKITGSQRLTYDWKTNLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ ++ + R Y+ I + S + + + I+ PL M L+A
Sbjct: 235 EKLGIVSLNADSLSIRGLYQYITYLKESGQVASV----YQLSMWQKILAPLSAAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S R+ + V GI GF+ Y + ++ + PV AA +P +L + +S
Sbjct: 291 VSFIFGPLRTVPMGVRVVSGIVGGFLFYILNQGFGNWSLVYSIPPVVAAALPSVLFLGVS 350
Query: 352 ILILLQK 358
I +L+++
Sbjct: 351 IFLLVKR 357
>gi|312959169|ref|ZP_07773688.1| membrane protein [Pseudomonas fluorescens WH6]
gi|311286939|gb|EFQ65501.1| membrane protein [Pseudomonas fluorescens WH6]
Length = 359
Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats.
Identities = 66/365 (18%), Positives = 130/365 (35%), Gaps = 23/365 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L L L + L + + + + + Y++ P +
Sbjct: 4 LDRYIGSSVLIAILAVLGIIIGLASLFAMVDEMKSIND--TYTVWNVLNYVLLTAPRRLY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ ++ +L SEL I RA G+SI +++ + +LL + +VL+ +A
Sbjct: 62 EMMPMAALIGCLIGLGSLASNSELTIMRAAGVSIGRIVWAVMKPMLLLMVCSVLIGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + +GD Q + W + + FI + P + T
Sbjct: 122 PPAEATAQANRALAQGSGDAQSAKHGLWHRQGDE----FIHINAVQPGG-LLIGVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI------------PI 232
DK+ ++ A A N+K +L + + + ++T I P
Sbjct: 177 DKERHMLSSSFAKSAQYSNEKWQLTDITTTYFRNVGQGTQASTEVINVPSEEWGISLKPE 236
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
++ E + I + +N R F+ ++ P++ A+ L+A
Sbjct: 237 LLNTVVMIPESLPISGLWSYIHYLKDQGLNNG----RYWLAFWVKVLQPVVTAALVLMAI 292
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS V G+ GF+ ++ P+ A L+P +
Sbjct: 293 SFVFGPLRSVTLGQRVFTGVLVGFIFQIAQNLLGPLSLVFGFSPLFAVLVPTTICALAGF 352
Query: 353 LILLQ 357
+L +
Sbjct: 353 WLLRR 357
>gi|294084201|ref|YP_003550959.1| permease YjgP/YjgQ [Candidatus Puniceispirillum marinum IMCC1322]
gi|292663774|gb|ADE38875.1| permease YjgP/YjgQ [Candidatus Puniceispirillum marinum IMCC1322]
Length = 368
Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats.
Identities = 71/363 (19%), Positives = 154/363 (42%), Gaps = 4/363 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMG-ELPNYSISRGAVLAATRV 59
+ G L+RYF YY + L L G +++ VI E+ Q + +VLA +
Sbjct: 6 IFGTLFRYFAFYYTRWILLCLFGLTVIISVIQSVELMRQKSVNKSDVEEISVSVLAMLNL 65
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P II+ I+PF L+ ++ F N+++E V++R G SIW L+P +V ++ +G+ V+V
Sbjct: 66 PNIIEVILPFAVLIGTMLCFHAWNKSNEFVVTRGFGQSIWVSLSPVLVSALAIGVLFVMV 125
Query: 120 INPIATSGEKIGIDLIQQWKD--NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
INPI K + D + + S+ W++ I I + +
Sbjct: 126 INPIGAVTSKRYNSQMATLNDDISNNLTISESGIWLRDMQDNVKIIINGDALDMKTAQIS 185
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ T + ++ R A + ++ +++ + + + + ++
Sbjct: 186 NPTIYSFVNGFELNWRVQAQSIQLTQMGWEVVDGIKWDSDGLQNELGTFIIPTNLEAVDL 245
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S S Y + ++ ++ + E F ++ P +LV +++IA +++
Sbjct: 246 TRSGQSPHSISIYALPHFITVLERAGL-PTINHEIHFNKILAFPFLLVGISMIATRITVR 304
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ +V G+ ++ +M G S + + A P I + + ++L +
Sbjct: 305 SINRGRQMKLVIKGLGIATCIFIFSYLMHVMGTSLTVPALVAGWTPAITVLLIGSIMLAR 364
Query: 358 KED 360
++
Sbjct: 365 LDE 367
>gi|262045293|ref|ZP_06018318.1| YjgP/YjgQ family membrane protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259037349|gb|EEW38595.1| YjgP/YjgQ family membrane protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 360
Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats.
Identities = 71/366 (19%), Positives = 135/366 (36%), Gaps = 19/366 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLKKSGQ-GSYDALGSGLYTILSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQAFGFTRLQVALAVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + F+ +++ N +
Sbjct: 123 WVAPQGEQMARNYRAQQMYGGSLLSTQQGLWAK----DGHNFVYIERV-KGNDELGGVSI 177
Query: 182 ITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQY-------GRIPIDKNSTTLNIPI 232
+ + ++ + A A N +L +V E G + T P
Sbjct: 178 YAFNPERRLQSVRYAASAKFDSENKVWRLSQVDESDLTDPKQVTGSQMVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I PL + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DPGRYQLNMWSKIFQPLSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + V GI GF+ Y + I + P+ AL+P +S+
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFIFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISL 353
Query: 353 LILLQK 358
++++K
Sbjct: 354 WLMMRK 359
>gi|323492970|ref|ZP_08098108.1| lipopolysaccharide ABC transporter permease [Vibrio brasiliensis
LMG 20546]
gi|323312801|gb|EGA65927.1| lipopolysaccharide ABC transporter permease [Vibrio brasiliensis
LMG 20546]
Length = 356
Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats.
Identities = 73/367 (19%), Positives = 138/367 (37%), Gaps = 21/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y K + TT L + L +I E ++GE Y + + + +P
Sbjct: 1 MFKILDLYIGKTIIATTSLVLATFVGLSAIIKYVEQLRKVGE-GTYDLIQALLFVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + L+
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLNIGMSVLKTAVPLMVLVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N FI K+ +
Sbjct: 120 QWGAPQAQKMARDLRAFATSGGAILSVRTGVWARDAND----FIFIGKVEDD--KIYAMN 173
Query: 181 SITIDKKNKIIHRKDADLAII-YNDKVKLKKV--------VEYQYGRIPIDKNSTTLNIP 231
D++ ++ A ++ K+K V VE +P +T+L P
Sbjct: 174 MWRFDEEKRLESVVHAATVEYVADNTWKMKDVQLTEMVDEVEISKQSLPEYSWTTSL-AP 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + Y+ + + S + R E F+ + P + M L+A
Sbjct: 233 DKLAVVTVKPEELSLGGLYDYVTYLKASEQ----DPSRYELAFWRKVTQPFSIAVMMLMA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y + PV A++P ++ ++++
Sbjct: 289 LSFIFGPLRSVTMGARILSGVIAGFTFYISSEFFGPLSLVYNIPPVFGAVMPSLVFLTIA 348
Query: 352 ILILLQK 358
+++L +K
Sbjct: 349 LMLLRRK 355
>gi|152985629|ref|YP_001346669.1| hypothetical protein PSPA7_1284 [Pseudomonas aeruginosa PA7]
gi|150960787|gb|ABR82812.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
Length = 355
Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats.
Identities = 68/363 (18%), Positives = 126/363 (34%), Gaps = 23/363 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L L + L + + N + +Y I A P
Sbjct: 4 LDRYIGVTVFVAILAVLGVILGLALLFAFIDELNDIS--ASYGIGEALRFIALTAPRRAY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P L+ +V L SEL I RA G+S+ +++ + ++L + +LV +A
Sbjct: 62 DMLPMAALIGCLVGLGTLASNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E I + GD Q S W + +I + P + T
Sbjct: 122 PWTENIAQSGRALAQGGGDSQSSKRGLWHRQ----GREYIHINAVQPNG-VLYGVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK----------M 234
D++ + A A D +L+ V P +K S + +P + +
Sbjct: 177 DEQRGLQSASFAKRARFETDHWQLEDVTTTLL--HPQEKRSEVVKLPTERWDAQLSPQLL 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ E + ++ I ++ +N R F+ ++ PL+ A+ L+A S
Sbjct: 235 NTVVMEPEALSISGLWQYIHYLADQG----LNNNRYWLAFWTKVLQPLVTAALVLMAISF 290
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS + G+ GF+ ++ P+ A +IP + +
Sbjct: 291 IFGPLRSVTLGQRIFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVVIPASACALAGLWL 350
Query: 355 LLQ 357
L +
Sbjct: 351 LRR 353
>gi|260772183|ref|ZP_05881100.1| putative membrane protein [Vibrio metschnikovii CIP 69.14]
gi|260613050|gb|EEX38252.1| putative membrane protein [Vibrio metschnikovii CIP 69.14]
Length = 356
Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 134/366 (36%), Gaps = 19/366 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++G+ +Y + + VP
Sbjct: 1 MFKILDWYIGRTIIATTTLVLVTFVGLSGIIKYVEQLRKVGD-GSYDLLQALFFVLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALAASSELVVMQASGFSKLDIGLSVLKTAIPLMIIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G+ W + +N FI KI +N
Sbjct: 120 EWGAPQAQKMARDMRAFATSGGNILSVRTGVWARDAND----FIFVAKI--DNERLYGLN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKVVEYQYGRIPIDKNST-------TLNIPI 232
D++ ++ H A+ + ++ +K+V + T P
Sbjct: 174 MWRFDEQKQLRHVVFAEQVDYLGDNHWLMKQVQITDLQDNVVLTKQYLDVYQWRTALAPD 233
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ E+ A Y+ + + S + R E + + P + M L+A
Sbjct: 234 KLAVVTVKPEELALSGLYDYVHYLKASEQ----DASRYELALWRKLTQPFSIGVMMLMAL 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + G+ +GF Y P A+ P ++ +++++
Sbjct: 290 SFIFGPLRSVTMGARILSGVIAGFTFYISSEFFGPLSLVYGFPPAFGAIAPSLVFLTIAV 349
Query: 353 LILLQK 358
++L +K
Sbjct: 350 MLLRRK 355
>gi|170723396|ref|YP_001751084.1| permease YjgP/YjgQ family protein [Pseudomonas putida W619]
gi|169761399|gb|ACA74715.1| permease YjgP/YjgQ family protein [Pseudomonas putida W619]
Length = 353
Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 64/359 (17%), Positives = 128/359 (35%), Gaps = 17/359 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L L + L + + + + + Y++ P +
Sbjct: 4 LDRYIGQSVLMAILAVLGIILGLASLFAFIDEMSDLSD--TYTVMDAGWFTLLTAPRRLY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P L+ ++ +L +SEL I RA G+SI +++ + ++L + +L+ +A
Sbjct: 62 DMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + G+ Q S W + + F+ + P + T
Sbjct: 122 PISENKAQADRSLAQGGGEAQSSKRGMWHRQGDE----FVHINSVQPNG-LLLGVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI------PIDKNSTTLNIPIKMDGFQ 238
D + KI+ A A ND L V + ++ P ++
Sbjct: 177 DDERKIVTSSFARRARYENDHWVLSDVSTTYFRGDHTEVVKSSEERWDVSVTPQLLNTVV 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
E + ++ I +S +N R F+ ++ P + A+ L+A S
Sbjct: 237 LAPESLSITGLWDYIHYLSDQG----LNNARYWLAFWTKVLQPAVTAALVLMAISFIFGP 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF+ ++ + P+ A +IP + + +L +
Sbjct: 293 LRSVTLGQRVFTGVLVGFVFRIAGDLLGPSSQVFGFPPLLAVVIPAGVCALAGLWLLRR 351
>gi|145219259|ref|YP_001129968.1| permease YjgP/YjgQ family protein [Prosthecochloris vibrioformis
DSM 265]
gi|145205423|gb|ABP36466.1| permease YjgP/YjgQ family protein [Chlorobium phaeovibrioides DSM
265]
Length = 360
Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 65/367 (17%), Positives = 148/367 (40%), Gaps = 17/367 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY F+ ++KT ++ + + L +I++ E + + + +P
Sbjct: 2 KILDRYIFQQFVKTFVFTTITFVSLFILINMVENLGDFMDR-KLLFTDIVLYYLRAIPDT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG---IFTVLV 119
I P +L+ +I+V L +SEL R+ G+S+ QLL PF++G I++ I
Sbjct: 61 ILITSPVSSLLASILVAGRLAGSSELPAIRSAGVSMRQLLYPFLLGGIIISTLNIINSFW 120
Query: 120 INPIAT-SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ PIA D + + + NG + S++ + ++ ++
Sbjct: 121 LAPIAAVHNHAFERDHLGKSRRNGAAEGSNLHII-----EPGSRVVTIGRLNTSFTGAKE 175
Query: 179 FTSITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQY---GRIPIDKNSTTLNIPIK 233
+ + R DA+ + L+ + ++ G + + +L + +
Sbjct: 176 VSIEEFSGTG-LRGRIDAESMRYDTGNKEWTLQNAAQRRFTPGGEEYQARPALSLPLSLT 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + + F + + ++ + R + + I +P + + LI
Sbjct: 235 LKSLAELNLRPDEMQFIQHWQYLAEKKHAGFAGLERTMVKLHTKIAVPFASLIIILIGVP 294
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S + R + +F+GF+ + + +FG +G++ P+ AA +P +L +++
Sbjct: 295 LSAKKKR-GGLATEIGISLFAGFLFLGLQKTIATFGYNGVVNPMLAAWLPNLLFLAIGYG 353
Query: 354 ILLQKED 360
I D
Sbjct: 354 IYRYSPD 360
>gi|209964086|ref|YP_002297001.1| predicted permease YjgP [Rhodospirillum centenum SW]
gi|209957552|gb|ACI98188.1| predicted permease YjgP [Rhodospirillum centenum SW]
Length = 359
Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 71/367 (19%), Positives = 155/367 (42%), Gaps = 17/367 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L RY + +L +L L+ L+ ++DL + +++ E + A R+P
Sbjct: 1 MTGTLARYLSRQFLVRSLAVLVALTALLQLLDLLDAASRVLERGGA-LGDLGTYALLRLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+++++P LV ++ + L + +E+V R+ G++ +QLL + ++ + +F +++
Sbjct: 60 SIVERLVPLAVLVGSLTTLYGLVQNNEIVAMRSAGLTPYQLLATLMPAAVAIAVFHLILS 119
Query: 121 NPIATSGEKIGIDLIQQWK--DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ IA E+ + + + + D ++ W+++ N + A+++L E
Sbjct: 120 DQIAPRAERAFLTWWAETEPPTDDDLPLAEKKLWLRVGN----TIVAAERVLERGARLEQ 175
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ-----YGRIPIDKNSTTLNI-PI 232
+ D + ++ R A A+ + L + P + + + P
Sbjct: 176 VSLYPRDDQGRVTERTRAAAAVYGDGNWTLLDGTRLDLTRGDFKAEPFARAPWPVRLHPA 235
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + +E I++ +S + ET+ + PL + M L+AA
Sbjct: 236 NVVEVLQPTENIPLLRLRSILRGDWAGRQSPAY----YETRLHETYAGPLATLIMVLLAA 291
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
V+ RS +A GI G ++ + G++G + V AA P + ++
Sbjct: 292 PVAHGMRRSGAVGGSMALGIGIGLTYLLADGMLAALGEAGAMPAVIAAWAPTVFFAAVGG 351
Query: 353 LILLQKE 359
IL+ E
Sbjct: 352 AILVHVE 358
>gi|114569776|ref|YP_756456.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
gi|114340238|gb|ABI65518.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
Length = 365
Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats.
Identities = 80/363 (22%), Positives = 157/363 (43%), Gaps = 5/363 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G L RY L L ++ ++D E +G + S L R P +
Sbjct: 4 GRLNRYMASQTAGGLLLAFLTIATVIILVDFVEQSRAVGTRVDVSTLDLLGLTLLRAPAL 63
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++ +PF+ L + F LNR+SEL++ RA GIS W++L +V ++ +GI +NP
Sbjct: 64 LESTLPFVFLFGTLTSLFRLNRSSELIVMRASGISAWRILTAPMVLAVGIGIIGATGLNP 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + + ++ W++ +N I A ++ + + +
Sbjct: 124 LAATLNAEFEARRDSLMNVRRVEGAEQPVWLRETNIDGFTVIAATQLEEARQVLRNPVFL 183
Query: 183 TIDKKN----KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ ++ R DA+ A + ++ +E +D + + I
Sbjct: 184 QFAEDASGTPRLERRIDAESAELRAGFWEVTGAIERTPTPSRLDLGAIAMPTSINRQALF 243
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + +F+++ + ++ + ++ + R E + + L+ +PL L+A TLIAA+ +L
Sbjct: 244 ERARSAEGVAFWDLPRLITSAREAGL-ATQRYELRLHALLALPLTLLASTLIAAAATLRL 302
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R G +GF+++ ++ SFG SG L P AA LT L+++ +
Sbjct: 303 HRLGGAAAFAMAGGIAGFVMFFFQEMLSSFGVSGALPPATAAWSAPALTALLALIYIAST 362
Query: 359 EDG 361
EDG
Sbjct: 363 EDG 365
>gi|56461046|ref|YP_156327.1| permease [Idiomarina loihiensis L2TR]
gi|56180056|gb|AAV82778.1| Predicted permease [Idiomarina loihiensis L2TR]
Length = 356
Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats.
Identities = 68/358 (18%), Positives = 134/358 (37%), Gaps = 10/358 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL +Y L+T+L L L +I E +G +Y++ A+ +P
Sbjct: 1 MFSILDKYIGLSVLRTSLLSLAVLTGLSSLIRFVEQLKAVGR-GDYNVMDAALFVFYSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L SELV+ A G S ++ + +I++ + + +
Sbjct: 60 RDVETFFPMAALLGGLIGVGMLASNSELVVMMAAGRSRLNIIGAVMKSAIIMMVAVMAIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA E G + Q G + W + + FI ++ + D
Sbjct: 120 EWIAPPMEAQGRAIRSQAISGGSLISAQQGVWAKDGSD----FINIGEV-EDTGRLNDVL 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI---DKNSTTLNIPIKMDGF 237
+ ++ A A DK ++++V Q I + +K S + D
Sbjct: 175 IYDFNDNRELQKVTYARTANFSGDKWRMQQVTVTQLDDIRMLRDEKPSMVWQSSLTPDKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S S ++ +++ SN R E + + P+ + M L+A S
Sbjct: 235 GVVTIKPESLSITGLLDYLTYLE-SNQQSAERYELALWRKLFAPITVAVMLLVALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS + G+ +GF + I + + + AL+P IL +++ +
Sbjct: 294 PLRSTTMGARILLGVITGFGFHVSNEIFGPLAQVYQIPAILGALLPSILFAGVAVYFM 351
>gi|78186277|ref|YP_374320.1| hypothetical protein Plut_0389 [Chlorobium luteolum DSM 273]
gi|78166179|gb|ABB23277.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
Length = 360
Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats.
Identities = 65/363 (17%), Positives = 142/363 (39%), Gaps = 9/363 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY F+ ++KT ++ L + L +I + E + + N A +P
Sbjct: 2 KILDRYIFRQFVKTFIFTSLAFVALFMLIHMVENLDDFMDK-NQGFEAIAQYYLFAIPQT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I P +L+ I+V L +SEL R+ G+S+ QLL PF++G +++ +
Sbjct: 61 ILITSPVSSLLAAILVAGKLAVSSELPAIRSAGVSMGQLLYPFLLGGMIISTINLTNSFW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA + + + + + + I P + I + P+ + +
Sbjct: 121 IAPAATLRNNNFELTELGHQRRDEEGGNSNLHILEP-GNRIITLGSLNPDMSSAREVSIE 179
Query: 183 TIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDKNSTTL---NIPIKMDGF 237
+K I+ R DAD L+ E + + + + + +
Sbjct: 180 QFSQKG-IVSRSDADGMRYNPEKKAWVLENAAERMFEDGSERFWTEPMLPVQLHLSLQSL 238
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + + + +S + R+ + + + +P + + +I +S +
Sbjct: 239 AELNLRPDEMNIARHWQYLSEKKHAGFAGLERSSVKLHTKLSLPFASLIIIIIGVPLSAK 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + +F+GF+ + + +FG +G++ P+ AA +P +L + + +I
Sbjct: 299 KKR-GGLAAEIGISLFAGFLFLGLQKTIATFGYNGVMPPMLAAWLPNLLFLGVGYVIYRY 357
Query: 358 KED 360
D
Sbjct: 358 SPD 360
>gi|258622809|ref|ZP_05717827.1| Predicted permease [Vibrio mimicus VM573]
gi|258584997|gb|EEW09728.1| Predicted permease [Vibrio mimicus VM573]
Length = 356
Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats.
Identities = 71/367 (19%), Positives = 140/367 (38%), Gaps = 21/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIVVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N FI K+ +N
Sbjct: 120 EWGAPQAQKLARDMRAFATSGGAIMSVRTGVWARDAND----FIFIGKV--DNEQLIGMN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKV--------VEYQYGRIPIDKNSTTLNIP 231
D+ K+ A+ + N++ +K +E +P + T+L P
Sbjct: 174 LWRFDEHKKLSTVIFAEQVDYVGNNEWLMKDAQLTRMVNEIEISKDTLPEYRWRTSL-AP 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + + + + S + + R E F+ + P+ + M L+A
Sbjct: 233 DKLAVVTVKPEELSLSGLSDYVHYLKASEQ----DSSRYELAFWRKMTQPISIAVMMLMA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y L P+ A+ P ++ ++++
Sbjct: 289 LSFIFGPLRSVTMGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGAVAPSLVFLAIA 348
Query: 352 ILILLQK 358
+ +L +K
Sbjct: 349 LGLLGRK 355
>gi|296104923|ref|YP_003615069.1| lipopolysaccharide export system permease protein LptG
[Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295059382|gb|ADF64120.1| lipopolysaccharide export system permease protein LptG
[Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 360
Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats.
Identities = 65/355 (18%), Positives = 129/355 (36%), Gaps = 19/355 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRLQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + F+ +++ ++ +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGQNFVYIERVKGDD-ELGGVSI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDKNSTTLN-------IPI 232
+ + ++ + A A + +L +V E S T++ P
Sbjct: 178 YAFNDERRLQSVRHASSAKFDPEHKQWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPD 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + + + +K + S + R + + I P+ + M L+A
Sbjct: 238 KLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPMSVAVMMLMAL 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
S RS + V GI GF+ Y + I + P+ AL+P
Sbjct: 294 SFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASF 348
>gi|209694121|ref|YP_002262049.1| putative permease [Aliivibrio salmonicida LFI1238]
gi|208008072|emb|CAQ78213.1| putative permease [Aliivibrio salmonicida LFI1238]
Length = 358
Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 70/367 (19%), Positives = 129/367 (35%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + T+ L+ + L +I E ++G+ Y + +P
Sbjct: 1 MFKILDWYIGRTIIATSSLCLVTLVGLSSIIKYVEQLRKVGK-GTYDLLDALYFVILSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + +I L + + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLAASSELVVMQAAGYSKLDIGISVLKTAIPLMLMVMALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G+ W + N FI ++ + T
Sbjct: 120 QWGAPQAQKMARDLRAFSISGGNIASMRTGVWAKDGND----FIYLSRVDDQA-KLYGVT 174
Query: 181 SITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDKN-------STTLNIP 231
DK+ K+ A A + KL V I +T P
Sbjct: 175 LWQFDKERKLDDIVFAKKAEYESKEEGWKLIDVSITDMKDENIITEKKLDSLSWSTTLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + Y+ + + S R E F+ + P+ + M L+A
Sbjct: 235 DKLAVVSVKPEEQSLTGLYDYVNYLKDSE----LDASRYELAFWRKALQPISVAVMMLLA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y + + P+ AL P + + ++
Sbjct: 291 LSFVFGPLRSVTMGARILSGVIAGFSFYISNEVFGPMTLVYNIHPIFGALGPSFVFLLIT 350
Query: 352 ILILLQK 358
+ +L +K
Sbjct: 351 LGLLNRK 357
>gi|37681089|ref|NP_935698.1| permease [Vibrio vulnificus YJ016]
gi|320155253|ref|YP_004187632.1| putative Permease [Vibrio vulnificus MO6-24/O]
gi|326423844|ref|NP_760390.2| lipopolysaccharide ABC transporter permease [Vibrio vulnificus
CMCP6]
gi|37199839|dbj|BAC95669.1| predicted permease [Vibrio vulnificus YJ016]
gi|319930565|gb|ADV85429.1| predicted Permease [Vibrio vulnificus MO6-24/O]
gi|319999214|gb|AAO09917.2| putative membrane protein [Vibrio vulnificus CMCP6]
Length = 357
Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 67/366 (18%), Positives = 129/366 (35%), Gaps = 19/366 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++G+ Y + +P
Sbjct: 1 MFKILDLYIGRTIVATTSLVLVTFVGLSGIIKYVEQLRKVGK-GTYDLLHALYFVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + + +
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGVSVLKTAVPLMLVVMALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N FI K+ +
Sbjct: 120 QWGAPDAQKMARDLRSFALSGGSIVSVRSGVWAKDAND----FIFIGKVDED--KLYGLN 173
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPI-------DKNSTTLNIPI 232
D+ K+ A+ +++ ++ V + T P
Sbjct: 174 MWKFDQNKKLQSVIFAEEVDYQQDNRWLMRYVQITDMQDEKVISKHSLEQMEWETSLAPD 233
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ E+ + Y+ + + S + R E F+ + P+ + M L+A
Sbjct: 234 KLAVVTVKPEELSLSGLYDYVTYLKASEQ----DASRYELAFWRKLTQPISIAVMMLMAL 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS V G+ +GF Y + PV A+ P I+ +++
Sbjct: 290 SFVFGPLRSVTMGARVISGVIAGFAFYISSEFFGPLTLVYGIPPVFGAVAPSIVFFIVAV 349
Query: 353 LILLQK 358
++L +K
Sbjct: 350 MLLNRK 355
>gi|261253952|ref|ZP_05946525.1| putative membrane protein [Vibrio orientalis CIP 102891]
gi|260937343|gb|EEX93332.1| putative membrane protein [Vibrio orientalis CIP 102891]
Length = 356
Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 71/366 (19%), Positives = 137/366 (37%), Gaps = 19/366 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y K + TT L + L +I E ++G+ Y + + + +P
Sbjct: 1 MFKILDLYIGKTIIATTSLVLATFVGLSAIIKYVEQLRKVGQ-GTYDLIQALLYVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L I L+
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMIMVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K DL G W + +N FI K+ +
Sbjct: 120 QWGAPQAQKAARDLRAISTSGGALLSVRTGVWARDAND----FIFIGKVEDD--TIYGMN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKV------VEYQYGRIPIDKNSTTLNI-PI 232
D+ ++ A + ++ +K V E + + + + S T ++ P
Sbjct: 174 MWRFDENKRLESVVHAKRVDYVSDNTWMMKDVQLTEMVDEIEISKHSLPEYSWTTSLAPD 233
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ E+ + Y+ + + S + R E F+ + P + M L+A
Sbjct: 234 KLAVVTVKPEELSLGGLYDYVSYLKASEQ----DPARYELAFWRKVTQPFSIAVMMLMAL 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + G+ +GF Y + PV A++P I+ +++++
Sbjct: 290 SFIFGPLRSVTMGARILSGVIAGFTFYISSEFFGPLSLVYNIPPVFGAVMPSIVFLTIAL 349
Query: 353 LILLQK 358
++L +K
Sbjct: 350 MLLRRK 355
>gi|107103347|ref|ZP_01367265.1| hypothetical protein PaerPA_01004416 [Pseudomonas aeruginosa PACS2]
Length = 355
Score = 213 bits (544), Expect = 3e-53, Method: Composition-based stats.
Identities = 67/363 (18%), Positives = 127/363 (34%), Gaps = 23/363 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L L + L + + N + +Y I P
Sbjct: 4 LDRYIGVTVFVAILAVLGVILGLALLFAFIDELNDIS--ASYGIGDALRFIFLTAPRRAY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P L+ +V L SEL I RA G+S+ +++ + ++L + +LV +A
Sbjct: 62 DMLPMAALIGCLVGLGTLASNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E I + GD Q S W + +I + P + T
Sbjct: 122 PWTENIAQSGRALAQGGGDSQSSKRGLWHRQ----GREYIHINAVQPNG-VLYGVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK----------M 234
D++ + A A D +L++V P +K S + +P + +
Sbjct: 177 DEQRGLESASFAKRARFETDHWQLEEVTTTLL--HPREKRSEVIKLPTERWDAQLSPQLL 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ E + ++ I ++ +N R F+ ++ PL+ A+ L+A S
Sbjct: 235 NTVVMEPEALSISGLWQYIHYLADQG----LNNNRYWLAFWTKVLQPLVTAALVLMAISF 290
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS + G+ GF+ ++ P+ A +IP + + +
Sbjct: 291 IFGPLRSVTLGQRIFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVVIPASICALAGVWL 350
Query: 355 LLQ 357
L +
Sbjct: 351 LRR 353
>gi|218778208|ref|YP_002429526.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
AK-01]
gi|218759592|gb|ACL02058.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
AK-01]
Length = 353
Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 131/358 (36%), Gaps = 15/358 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y + K L L +++ +D E + + R+P +
Sbjct: 2 KIISKYIARALFKNLLTILFAVVVIYVAVDFFEKIDDF-MAAKIPLLTVGYFFLLRIPYV 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
Q++P L+ +VV + R +E++ + G S + LL P V ++ +F
Sbjct: 61 AAQVLPVGVLLSAMVVIGLMARHNEIIAYASGGGSSFSLLKPIAVMGVIASLFLFAFNEI 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + + Q + + + K +PE H D T
Sbjct: 121 IVPAAAAEANQIWYQDVRKEGDVGTRTTWFHRNGLIG-----RVDKYIPETHTARDITLN 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ---- 238
D K+I R DAD A I L+ +E GR + L + + Q
Sbjct: 176 YYDPSFKLIKRIDADDATISGTVWTLRNAMESVSGRASDIRQHKELKVEMDFTADQLHDR 235
Query: 239 -KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
K S++ + E I K+ S + R I PL+ + M+++ +++L
Sbjct: 236 VKRSDEMSLVQLKEHIHKIE----SEGYKAVRFRVDLASKISFPLVCLIMSVLGGAMALR 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + G+ F + + ++ S G +G+ P+ +A + L+ + +
Sbjct: 292 GKRGEGLAVNIVMGMGLAFAYWVVHSLCLSLGYAGMYSPIFSAWTANAVFAVLAAVFI 349
>gi|262166530|ref|ZP_06034267.1| putative membrane protein [Vibrio mimicus VM223]
gi|262026246|gb|EEY44914.1| putative membrane protein [Vibrio mimicus VM223]
Length = 356
Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats.
Identities = 70/367 (19%), Positives = 140/367 (38%), Gaps = 21/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L + L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMVVVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N FI K+ +N
Sbjct: 120 EWGAPQAQKLARDMRAFATSGGAIMSVRTGVWARDAND----FIFIGKV--DNEQLIGMN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKV--------VEYQYGRIPIDKNSTTLNIP 231
D+ K+ A+ + N++ +K +E +P + T+L P
Sbjct: 174 LWRFDEHKKLSTVIFAEQVDYVGNNEWLMKDAQLTRMVNEIEISKDTLPEYRWRTSL-AP 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + + + + S + + R E F+ + P+ + M L+A
Sbjct: 233 DKLAVVTVKPEELSLSGLSDYVHYLKASEQ----DSSRYELAFWRKMTQPISIAVMMLMA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y L P+ A+ P ++ ++++
Sbjct: 289 LSFIFGPLRSVTMGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGAVAPSLVFLTIA 348
Query: 352 ILILLQK 358
+ +L +K
Sbjct: 349 LGLLGRK 355
>gi|15599022|ref|NP_252516.1| hypothetical protein PA3827 [Pseudomonas aeruginosa PAO1]
gi|116051855|ref|YP_789302.1| hypothetical protein PA14_14510 [Pseudomonas aeruginosa UCBPP-PA14]
gi|218889889|ref|YP_002438753.1| putative permease [Pseudomonas aeruginosa LESB58]
gi|254236731|ref|ZP_04930054.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|296387657|ref|ZP_06877132.1| putative permease [Pseudomonas aeruginosa PAb1]
gi|313109246|ref|ZP_07795214.1| hypothetical protein PA39016_001710055 [Pseudomonas aeruginosa
39016]
gi|9950002|gb|AAG07214.1|AE004800_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|115587076|gb|ABJ13091.1| putative permease [Pseudomonas aeruginosa UCBPP-PA14]
gi|126168662|gb|EAZ54173.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|218770112|emb|CAW25874.1| putative permease [Pseudomonas aeruginosa LESB58]
gi|310881716|gb|EFQ40310.1| hypothetical protein PA39016_001710055 [Pseudomonas aeruginosa
39016]
Length = 355
Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats.
Identities = 67/363 (18%), Positives = 127/363 (34%), Gaps = 23/363 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L L + L + + N + +Y I P
Sbjct: 4 LDRYIGVTVFVAILAVLGVILGLALLFAFIDELNDIS--ASYGIGDALRFIFLTAPRRAY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P L+ +V L SEL I RA G+S+ +++ + ++L + +LV +A
Sbjct: 62 DMLPMAALIGCLVGLGTLASNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E I + GD Q S W + +I + P + T
Sbjct: 122 PWTENIAQSGRALAQGGGDSQSSKRGLWHRQ----GREYIHINAVQPNG-VLYGVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK----------M 234
D++ + A A D +L++V P +K S + +P + +
Sbjct: 177 DEQRGLESASFAKRARFETDHWQLEEVTTTLL--HPREKRSEVVKLPTERWDAQLSPQLL 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ E + ++ I ++ +N R F+ ++ PL+ A+ L+A S
Sbjct: 235 NTVVMEPEALSISGLWQYIHYLADQG----LNNNRYWLAFWTKVLQPLVTAALVLMAISF 290
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS + G+ GF+ ++ P+ A +IP + + +
Sbjct: 291 IFGPLRSVTLGQRIFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVVIPASICALAGVWL 350
Query: 355 LLQ 357
L +
Sbjct: 351 LRR 353
>gi|26987719|ref|NP_743144.1| permease YjgP/YjgQ family protein [Pseudomonas putida KT2440]
gi|24982407|gb|AAN66608.1|AE016288_7 conserved hypothetical protein [Pseudomonas putida KT2440]
gi|313497349|gb|ADR58715.1| Permease YjgP/YjgQ family protein [Pseudomonas putida BIRD-1]
Length = 353
Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats.
Identities = 65/360 (18%), Positives = 133/360 (36%), Gaps = 19/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L L + L + + + + Y++ P +
Sbjct: 4 LDRYIGQSVLLAILAVLGIILGLASLFAFIDEMGDLSD--TYTVMEAGNFVLLTAPRRLY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ ++ +L +SEL I RA G+SI +++ + ++L + +L+ +A
Sbjct: 62 EMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + G+ Q S W + + ++ + P+ + T
Sbjct: 122 PVTENKAQADRSLAQGGGEAQSSKRGMWHRQ----GEEYVHINAVQPDG-LLLGVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-------IPIDKNSTTLNIPIKMDGF 237
D + KI+ A A ND L V + P ++ +L P ++
Sbjct: 177 DSERKIVTSSFARRAQYQNDHWLLADVRTTYFRGDHTEVVNAPEERWDVSL-TPELLNTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + ++ I +S +N R F+ ++ P++ A+ L+A S
Sbjct: 236 ILAPESLSITGLWDYIHYLSDQG----LNNSRYWLAFWTKVLQPMVTAALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF+ ++ + P+ A +IP + + +L +
Sbjct: 292 PLRSVTLGQRVFTGVLVGFVFRIGQDLLGPSSQVFGFPPLLAVVIPAGICALAGVWLLRR 351
>gi|312897532|ref|ZP_07756952.1| conserved hypothetical protein [Megasphaera micronuciformis F0359]
gi|310621384|gb|EFQ04924.1| conserved hypothetical protein [Megasphaera micronuciformis F0359]
Length = 364
Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats.
Identities = 63/364 (17%), Positives = 138/364 (37%), Gaps = 13/364 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K ++ L+ + + + S+ + +P II
Sbjct: 3 ILDKYILKEFIGPFLFGVCAFTSVFVGTGTLYRIANLINQYGASMWAAFRILVLALPSII 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ F ++ SE+++ R+ G + +L P + ++ + + T +
Sbjct: 63 VITFPMSVLLGSLMAFGRMSAASEIIVMRSGGQNFPRLAMPIFITALCISLGTTAFNEFV 122
Query: 124 ATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+I ++ K D I + + A++ + +D T
Sbjct: 123 VPKANNAYNRIINEEVKAGAQPTTQDHIILKNVKGSDISSLMYARQYDGQEKRLKDLTVQ 182
Query: 183 TIDKKNKIIHRKD-ADLAIIYNDKVKLKKVVEYQYGRIPIDK-------NSTTLNIPIKM 234
D ++ R + AD A DK + K + Y + N TL I K
Sbjct: 183 EFDND--VLTRVEKADYAEWDGDKWIMHKGIIYDLSGGDEQQVTRTMTFNHQTLPISQKP 240
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + ++ + E+ +++ + +N + + + + +PL + L+ A +
Sbjct: 241 NKMAESQKKPDELTIRELKEQIKVLD-NNSVDTNKMKVELFNRFSMPLASLVCALVGAPL 299
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L+ R I + F+ Y+I+TI + G G + P AA +P ++T I +
Sbjct: 300 GLQKQR-GSSSIGFGISVIVIFIYYSIMTISNALGNGGRIPPYVAAFLPDVITGIAGIWL 358
Query: 355 LLQK 358
+ +K
Sbjct: 359 IYKK 362
>gi|262401790|ref|ZP_06078355.1| putative membrane protein [Vibrio sp. RC586]
gi|262351762|gb|EEZ00893.1| putative membrane protein [Vibrio sp. RC586]
Length = 356
Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats.
Identities = 70/367 (19%), Positives = 139/367 (37%), Gaps = 21/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIITLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N FI K+ +N
Sbjct: 120 EWGAPQAQKLARDMRAFATSGGAIMSVRTGVWARDAND----FIFIAKV--DNEQLTGMN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKV--------VEYQYGRIPIDKNSTTLNIP 231
D+ K+ A+ + N++ +K +E +P + T+L P
Sbjct: 174 LWRFDENKKLSTVIFAERVDYVGNNEWLMKDAQLTRLVSDIEISKESLPEYRWRTSL-AP 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + + + + S + + R E + + P+ + M L+A
Sbjct: 233 DKLAVVTVKPEELSLSGLSDYVHYLKASEQ----DSSRYELALWRKVTQPISIAVMMLMA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y L P+ A+ P ++ ++++
Sbjct: 289 LSFIFGPLRSVTMGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGAVAPSLVFLTIA 348
Query: 352 ILILLQK 358
+ +L +K
Sbjct: 349 LGLLGRK 355
>gi|254242518|ref|ZP_04935840.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|126195896|gb|EAZ59959.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
Length = 355
Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats.
Identities = 67/363 (18%), Positives = 127/363 (34%), Gaps = 23/363 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L L + L + + N + +Y I P
Sbjct: 4 LDRYIGVTVFVAILAVLGVILGLALLFAFIDELNDIS--ASYGIGDALRFIFLTAPRRAY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P L+ +V L SEL I RA G+S+ +++ + ++L + +LV +A
Sbjct: 62 DMLPMAALIGCLVGLGTLASNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E I + GD Q S W + +I + P + T
Sbjct: 122 PWTENIAQSGRALAQGGGDSQSSKRGLWHRQ----GREYIHINAVQPNG-VLYGVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK----------M 234
D++ + A A D +L++V P +K S + +P + +
Sbjct: 177 DEQRGLESASFAKRARFETDHWQLEEVTTTLL--HPREKRSEVVKLPTERWDAQLSPQLL 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ E + ++ I ++ +N R F+ ++ PL+ A+ L+A S
Sbjct: 235 NTVVMEPEALSISGLWQYIHYLADQG----LNNNRYWLAFWTKVLQPLVTAALVLMAISF 290
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS + G+ GF+ ++ P+ A +IP + + +
Sbjct: 291 IFGPLRSVTLGQRIFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVVIPASICALAGVWL 350
Query: 355 LLQ 357
L +
Sbjct: 351 LRR 353
>gi|104783410|ref|YP_609908.1| hypothetical protein PSEEN4441 [Pseudomonas entomophila L48]
gi|95112397|emb|CAK17124.1| conserved hypothetical protein, putative membrane protein
[Pseudomonas entomophila L48]
Length = 353
Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats.
Identities = 63/359 (17%), Positives = 130/359 (36%), Gaps = 17/359 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L L + L + + + + + Y++ P +
Sbjct: 4 LDRYIGQSVLLAILAVLGIILGLASLFAFIDEMSDLSD--TYTVMDAGSFVLLTAPRRLY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P L+ ++ +L +SEL I RA G+SI +++ + ++L + +L+ +A
Sbjct: 62 DMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + G+ Q S W + + F+ + P + T
Sbjct: 122 PVTENKAQADRSLAQGGGEAQSSKRGMWHRQ----GEEFVHINSVQPNG-LLLGVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVE--YQYGRIPIDKNSTTL----NIPIKMDGFQ 238
D++ KI A A + K L V ++ + K + P ++
Sbjct: 177 DEQRKIQTSSFARKAQYHEGKWVLNDVATTYFRGDHTEVVKAPEEVWDVSVTPELLNTVV 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
E + ++ I +S +N R F+ ++ P + A+ L+A S
Sbjct: 237 LAPESLSITGLWDYIHYLSDQG----LNNSRYWLAFWTKVLQPAVTAALVLMAISFIFGP 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF+ ++ + P+ A +IP + + ++ +
Sbjct: 293 LRSVTLGQRVFTGVLVGFVFRIAGDLLGPSSQVFGFPPLLAVVIPAGICALAGLWLMRR 351
>gi|148546263|ref|YP_001266365.1| permease YjgP/YjgQ family protein [Pseudomonas putida F1]
gi|148510321|gb|ABQ77181.1| permease YjgP/YjgQ family protein [Pseudomonas putida F1]
Length = 353
Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats.
Identities = 65/360 (18%), Positives = 133/360 (36%), Gaps = 19/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L L + L + + + + Y++ P +
Sbjct: 4 LDRYIGQSVLLAILAVLGIILGLASLFAFIDEMGDLSD--TYTVLEAGNFVLLTAPRRLY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ ++ +L +SEL I RA G+SI +++ + ++L + +L+ +A
Sbjct: 62 EMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + G+ Q S W + + ++ + P+ + T
Sbjct: 122 PVTENKAQADRSLAQGGGEAQSSKRGMWHRQ----GEEYVHINAVQPDG-LLLGVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-------IPIDKNSTTLNIPIKMDGF 237
D + KI+ A A ND L V + P ++ +L P ++
Sbjct: 177 DSERKIVTSSFARRAQYQNDHWLLADVRTTYFRGDHTEVVNAPEERWDVSL-TPELLNTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + ++ I +S +N R F+ ++ P++ A+ L+A S
Sbjct: 236 ILAPESLSITGLWDYIHYLSDQG----LNNSRYWLAFWTKVLQPMVTAALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF+ ++ + P+ A +IP + + +L +
Sbjct: 292 PLRSVTLGQRVFTGVLVGFVFRIGQDLLGPSSQVFGFPPLLAVVIPAGICALAGVWLLRR 351
>gi|77457218|ref|YP_346723.1| permease YjgP/YjgQ [Pseudomonas fluorescens Pf0-1]
gi|77381221|gb|ABA72734.1| putative ABC transport system, membrane protein [Pseudomonas
fluorescens Pf0-1]
Length = 353
Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats.
Identities = 64/360 (17%), Positives = 131/360 (36%), Gaps = 19/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L + L + + + + Y++ P +
Sbjct: 4 LDRYIGSSVFIAIIAVLAIILGLATLFAFIDEMGDVSD--TYTLVDVLSFVLLTAPRRLY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P L+ ++ +L +SEL + RA G+SI +++ + ++L + VL+ +A
Sbjct: 62 DMLPMAALIGCLIGLGSLASSSELTVMRAAGVSIGRIVWAVMKPMLVLMLAGVLIGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ E + + +GD Q + W + + FI + P T
Sbjct: 122 PATESMAQANRSLAQGSGDAQSAKHGMWHRQGDE----FIHINSVQPNG-RLYGVTRYHF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-------IPIDKNSTTLNIPIKMDGF 237
DK+ ++ A A D +L V ++ P+++ +L+ P +
Sbjct: 177 DKERHLLSSSFAKRAEFDTDHWQLTDVTTTKFHERSTEVVNTPVERWDVSLS-PQLLSTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + I ++ SN R F+ ++ PL+ A+ L+A S
Sbjct: 236 VMAPESLSITGLWGYIHYLADQGLSNG----RYWLAFWVKVLQPLVTAALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF + ++ P+ A L+P + + +L +
Sbjct: 292 PLRSVTLGQRVFTGVLVGFTFRIVQDLLGPSSLVFGFSPLFAVLVPAGVCALAGVWLLRR 351
>gi|218710647|ref|YP_002418268.1| hypothetical protein VS_2727 [Vibrio splendidus LGP32]
gi|218323666|emb|CAV19977.1| hypothetical permease [Vibrio splendidus LGP32]
Length = 356
Score = 212 bits (541), Expect = 6e-53, Method: Composition-based stats.
Identities = 68/367 (18%), Positives = 130/367 (35%), Gaps = 21/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++G Y + + +P
Sbjct: 1 MFKILDLYIGRTIIATTSLVLVTFVGLSGIIKYVEQLRKVGR-GTYDLLQALYFVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + +I L + L+
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLAASSELVVMQAAGFSKLDIGLSVLKTAIPLMVIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G + W + +N FI KI +
Sbjct: 120 QWGAPQAQKMARDLRTISVAGGSIISTQSGVWARDAND----FIFIVKIDDD--KLYGLN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKVVEYQYGR--------IPIDKNSTTLNIP 231
D+ + + + ++ ++ V + +P T+L P
Sbjct: 174 MWRYDENKALKTAIYSKEVDYVGDNVWTMRDVEVTSFENEIQVTKESLPTFSWETSL-AP 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + Y+ + + S + R E + I P+ + M L+A
Sbjct: 233 DKLAIVTVKPEELSLSGLYDYVSYLKASEQ----DAARYELALWRKITQPISIAVMMLMA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y + P A+ P ++ ++
Sbjct: 289 LSFIFGPLRSVTMGARILSGVIAGFTFYISSEFFGPISLVYQIPPAFGAIAPSVVFFGIA 348
Query: 352 ILILLQK 358
I++L +K
Sbjct: 349 IMLLRRK 355
>gi|148977743|ref|ZP_01814299.1| hypothetical protein VSWAT3_21150 [Vibrionales bacterium SWAT-3]
gi|145962957|gb|EDK28227.1| hypothetical protein VSWAT3_21150 [Vibrionales bacterium SWAT-3]
Length = 356
Score = 212 bits (541), Expect = 6e-53, Method: Composition-based stats.
Identities = 70/367 (19%), Positives = 132/367 (35%), Gaps = 21/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++G Y + + +P
Sbjct: 1 MFKILDLYIGRTIIATTSLVLVTFVGLSGIIKYVEQLRKVGR-GTYDLLQALYFVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLAASSELVVMQAAGFSKLDIGFSVLKTAIPLMIVVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G+ + W + +N FI KI +
Sbjct: 120 QWGAPQAQKMARDLRTISIAGGNIISTQSGVWARDAND----FIFIVKIDDD--KLYGMN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKVVEYQYGR--------IPIDKNSTTLNIP 231
D+ + + + ++ +K VV + +P T+L P
Sbjct: 174 MWRFDENKALKTAIYSKEVDYVGDNVWTMKDVVVTSFENELQITKENLPTYTWKTSL-AP 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + Y+ + + S + R E + I P+ + M L+A
Sbjct: 233 DKLAIVTVKPEELSLSGLYDYVSYLKASEQ----DAARYELALWRKITQPISIAVMMLMA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y + P L P ++ + ++
Sbjct: 289 LSFIFGPLRSVTMGARILSGVIAGFTFYISSEFFGPVSLVYQIPPAFGVLAPSVVFLGIA 348
Query: 352 ILILLQK 358
+++L +K
Sbjct: 349 VMLLRRK 355
>gi|237807324|ref|YP_002891764.1| permease YjgP/YjgQ family protein [Tolumonas auensis DSM 9187]
gi|237499585|gb|ACQ92178.1| permease YjgP/YjgQ family protein [Tolumonas auensis DSM 9187]
Length = 356
Score = 212 bits (541), Expect = 6e-53, Method: Composition-based stats.
Identities = 69/365 (18%), Positives = 139/365 (38%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M GIL RY + + L + + L +I + +GE +++ + +P
Sbjct: 1 MFGILDRYVGRTVIMAILMCTVMLVGLSSLIKFVDQLQNVGE-GSFTTFHAILRVLYAIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
P L+ ++ L +SELV+ +A G+S +++ + I + +L+
Sbjct: 60 GDTVLFFPMAALLGGVIGLGQLASSSELVVLQAAGLSRAKIVISALKTVIPVMFLIMLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E+ D+ G S W++ + FI + + T
Sbjct: 120 EYVAPIAEQKAHDIKTSAISGGKITASTYGIWVKEGHD----FISIDTLFRDGS-LRGVT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-------DKNSTTLNIPIK 233
+ ++ + +A+ LK +V Q D T P K
Sbjct: 175 LYRFNLNGELQEVIRSAMAVYQQQAWHLKDIVITQLQDKQQIKFKNLTDWVWKTNLTPDK 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ ++ +++ Y I M KSN E +F+ ++ P+ ++AM L+AAS
Sbjct: 235 LGVVSVSPDELSAQGLYNYISYM----KSNGQQVDDYELEFWRKLLAPVSVIAMLLLAAS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + G+ GF + ++ F + PV A +P ++ + ++I
Sbjct: 291 TIFGPLRSVSMGARLISGVMMGFAFFVANQVLGPFSLVYNVPPVIGASVPSLIFMGVAIY 350
Query: 354 ILLQK 358
+L ++
Sbjct: 351 MLQRR 355
>gi|262170558|ref|ZP_06038236.1| putative membrane protein [Vibrio mimicus MB-451]
gi|261891634|gb|EEY37620.1| putative membrane protein [Vibrio mimicus MB-451]
Length = 356
Score = 212 bits (541), Expect = 6e-53, Method: Composition-based stats.
Identities = 71/367 (19%), Positives = 140/367 (38%), Gaps = 21/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIVVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N FI K+ +N
Sbjct: 120 EWGAPQAQKLARDMRAFATSGGAIMSVRTGVWARDAND----FIFIGKV--DNEQLIGMN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKV--------VEYQYGRIPIDKNSTTLNIP 231
D+ K+ A+ + N++ +K +E +P + T+L P
Sbjct: 174 LWRFDEHKKLSTVIFAEQVDYVGNNEWLMKDAQLTRMVNEIEISKETLPEYRWRTSL-AP 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + + + + S + + R E F+ + P+ + M L+A
Sbjct: 233 DKLAVVTVKPEELSLSGLSDYVHYLKASEQ----DSSRYELAFWRKMTQPISIAVMMLMA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y L P+ A+ P ++ ++++
Sbjct: 289 LSFIFGPLRSVTMGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGAVAPSLVFLTIA 348
Query: 352 ILILLQK 358
+ +L +K
Sbjct: 349 LGLLGRK 355
>gi|258625834|ref|ZP_05720713.1| Predicted permease [Vibrio mimicus VM603]
gi|258582072|gb|EEW06942.1| Predicted permease [Vibrio mimicus VM603]
Length = 356
Score = 212 bits (540), Expect = 7e-53, Method: Composition-based stats.
Identities = 71/367 (19%), Positives = 139/367 (37%), Gaps = 21/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIVVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N FI K+ +N
Sbjct: 120 EWGAPQAQKLARDMRAFATSGGAIMSVRTGVWARDAND----FIFIGKV--DNEQLIGMN 173
Query: 181 SITIDKKNKIIHRKDADLAII-YNDKVKLKKV--------VEYQYGRIPIDKNSTTLNIP 231
D+ K+ A+ N++ +K +E +P + T+L P
Sbjct: 174 LWRFDEHKKLSTVIFAEQVYYVGNNEWLMKDAQLTRMVNEIEISKETLPEYRWRTSL-AP 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + + + + S + + R E F+ + P+ + M L+A
Sbjct: 233 DKLAVVTVKPEELSLSGLSDYVHYLKASEQ----DSSRYELAFWRKMTQPISIAVMMLMA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y L P+ A+ P ++ ++++
Sbjct: 289 LSFIFGPLRSVTMGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGAVAPSLVFLTIA 348
Query: 352 ILILLQK 358
+ +L +K
Sbjct: 349 LGLLGRK 355
>gi|323496139|ref|ZP_08101199.1| lipopolysaccharide ABC transporter permease [Vibrio sinaloensis DSM
21326]
gi|323318883|gb|EGA71834.1| lipopolysaccharide ABC transporter permease [Vibrio sinaloensis DSM
21326]
Length = 356
Score = 212 bits (540), Expect = 7e-53, Method: Composition-based stats.
Identities = 73/366 (19%), Positives = 132/366 (36%), Gaps = 19/366 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E +G +Y + VP
Sbjct: 1 MFKILDLYIGRTIIATTTMVLATLIGLSGIIRFVEQLRSVGR-GSYDLLHAFYFVVLGVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ L+ ++ L +SELV+ +A G S + + ++ L + +L+
Sbjct: 60 RDIEMFFAMSALLGALIGLGMLASSSELVVMQASGYSKLDIGISVLKTAVPLMLIIMLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ +L G W + ++ FI K+ +N
Sbjct: 120 EWGAPQAQKMARELRSFSISGGQIVSVRAGVWARDADD----FIFIGKVEDDN--LYGLK 173
Query: 181 SITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDKNST-------TLNIPI 232
D+ K+ A A N++ LK ST T +P
Sbjct: 174 VWRFDEDKKLYQVLFAPEADYQGNNQWLLKDTQITDMADRVELAKSTVREYNWHTTLVPD 233
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + E+ A Y+ + + S + + R E + + P + M L+A
Sbjct: 234 KLAVVKVEPEELAMSGLYDYVTYLKESEQ----DSSRYELALWRKVTQPFSIAVMMLMAL 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + G+ +GF Y + PV A++P I+ ++++I
Sbjct: 290 SFVFGPLRSVSMGARILSGVVAGFTFYISSEFFGPLTLVYGIPPVFGAIMPSIVFLTIAI 349
Query: 353 LILLQK 358
L+L +K
Sbjct: 350 LLLRRK 355
>gi|183600431|ref|ZP_02961924.1| hypothetical protein PROSTU_04002 [Providencia stuartii ATCC 25827]
gi|188020227|gb|EDU58267.1| hypothetical protein PROSTU_04002 [Providencia stuartii ATCC 25827]
Length = 358
Score = 212 bits (540), Expect = 7e-53, Method: Composition-based stats.
Identities = 73/367 (19%), Positives = 140/367 (38%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L + L L + L +I E ++G+ Y+ V +P
Sbjct: 1 MFGVLDRYIGRTILNSILMTLFMLVSLSGIIKFVEQLRKVGD-GEYTTLGAGVFTLLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L SELV+ +A G + Q+ + +I L I +L+
Sbjct: 60 KDIDIFFPMAALLGALLGLGALASRSELVVMQASGFTRLQIALSVMKTAIPLVIVAMLIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A S ++ + + +D W + FI +++ + ++ +
Sbjct: 120 EWVAPSADQWARNYRAEKIVGNSLVVTDEGMWAKDGPD----FIHIQRVS-DTTSIQEVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
++++K+ A N L +V E S L P
Sbjct: 175 IYRFNEQHKLTSVMFASSGAYDKDNQLWVLSQVDESILSSEKKITGSQRLTYEWKTNLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ ++ + R Y+ I + S + E + I+ PL M +A
Sbjct: 235 EKLGIVSLSADSLSIRGLYQYIAYLKESGQVAAV----YELSMWKKILAPLSAAVMMFMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S R+ + V GI GF+ Y + + + P+ AAL+P +L + +S
Sbjct: 291 VSFIFGPLRTVPMGVRVVSGIVGGFLFYVLNEGFGKWSLVYSIPPIIAALLPSVLFLGVS 350
Query: 352 ILILLQK 358
I++L+++
Sbjct: 351 IVLLVKR 357
>gi|229527564|ref|ZP_04416956.1| hypothetical protein VCG_000633 [Vibrio cholerae 12129(1)]
gi|229335196|gb|EEO00681.1| hypothetical protein VCG_000633 [Vibrio cholerae 12129(1)]
gi|327484987|gb|AEA79394.1| Predicted Permease [Vibrio cholerae LMA3894-4]
Length = 356
Score = 212 bits (540), Expect = 8e-53, Method: Composition-based stats.
Identities = 72/367 (19%), Positives = 138/367 (37%), Gaps = 21/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N FI K+ EN
Sbjct: 120 EWGAPQAQKMARDMRAFATSGGAIMSVRTGVWARDAND----FIFIAKV--ENEQLYGLN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKVV--------EYQYGRIPIDKNSTTLNIP 231
D+ K+ ++ + N++ +K V E +P + T+L P
Sbjct: 174 LWRFDENKKLSTVIFSEQVDYVANNEWLMKDAVLTRLVNDIEISKESLPEYRWRTSL-AP 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + + + + S + R E + + P+ + M L+A
Sbjct: 233 DKLAVVTVKPEELSLTGLSDYVHYLKASEQ----DTSRYELALWRKVTQPISIAVMMLMA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y L P+ AL P ++ ++++
Sbjct: 289 LSFIFGPLRSVTMGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIA 348
Query: 352 ILILLQK 358
+ +L +K
Sbjct: 349 LGLLGRK 355
>gi|84387841|ref|ZP_00990856.1| hypothetical protein V12B01_07608 [Vibrio splendidus 12B01]
gi|84377356|gb|EAP94224.1| hypothetical protein V12B01_07608 [Vibrio splendidus 12B01]
Length = 356
Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats.
Identities = 72/367 (19%), Positives = 132/367 (35%), Gaps = 21/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++G Y + + VP
Sbjct: 1 MFKILDLYIGRTIIATTSLVLVTFVGLSGIIKYVEQLRKVGR-GTYDLLQALYFVLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLAASSELVVMQAAGFSKLDIGLSVLKTAIPLMIVVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G+ + W + +N FI KI E
Sbjct: 120 QWGAPQAQKMARDLRTISIAGGNIISTQSGVWARDAND----FIFVVKIDDE--KLYGLN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKVVEYQYGR--------IPIDKNSTTLNIP 231
D+ + ++ + ++ + V + +P T+L P
Sbjct: 174 MWRFDENKALKTAIYSEEVDYVGDNVWTMNDVEITSFENEIQITKESLPTYSWKTSL-AP 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + Y+ + + S + R E + I P+ + M L+A
Sbjct: 233 DKLAIVTVKPEELSLSGLYDYVSYLKASEQ----DASRYELALWRKITQPISIAVMMLMA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y + P AL P ++ + ++
Sbjct: 289 LSFIFGPLRSVTMGARILSGVIAGFTFYISSEFFGPVSLVYQIPPAFGALAPSVVFLGIA 348
Query: 352 ILILLQK 358
I++L +K
Sbjct: 349 IMLLRRK 355
>gi|167032003|ref|YP_001667234.1| permease YjgP/YjgQ family protein [Pseudomonas putida GB-1]
gi|166858491|gb|ABY96898.1| permease YjgP/YjgQ family protein [Pseudomonas putida GB-1]
Length = 353
Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats.
Identities = 64/360 (17%), Positives = 133/360 (36%), Gaps = 19/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L L + L + + + + + Y++ P +
Sbjct: 4 LDRYIGQSVLMAILAVLGIILGLASLFAFIDEMSDLSD--TYTVMEAGNFVLLTAPRRLY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ ++ +L +SEL I RA G+SI +++ + ++L + +L+ +A
Sbjct: 62 EMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + G+ Q S W + + ++ + P + T
Sbjct: 122 PVTENKAQADRSLAQGGGEAQSSKRGMWHRQ----GEEYVHINAVQPNG-LLLGVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-------IPIDKNSTTLNIPIKMDGF 237
D + KI+ A A +D L V + P ++ +L P ++
Sbjct: 177 DNERKIVTSSFARRAQYQDDHWLLADVRTTYFRGDHTEVVNAPQERWDVSL-TPELLNTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + ++ I +S +N R F+ ++ P++ A+ L+A S
Sbjct: 236 ILAPESLSITGLWDYIHYLSDQG----LNNARYWLAFWTKVLQPMVTAALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF+ ++ + P+ A +IP + + +L +
Sbjct: 292 PLRSVTLGQRVFTGVLVGFVFRIGQDLLGPSSQVFGFPPLLAVVIPAGICALAGVWLLRR 351
>gi|261401001|ref|ZP_05987126.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
gi|269209118|gb|EEZ75573.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
gi|309378517|emb|CBX22870.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 356
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 65/361 (18%), Positives = 149/361 (41%), Gaps = 12/361 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + T+Y LL + L ++ +G+ +Y I A ++P
Sbjct: 2 NLISRYIIRQMTAMTVYTLLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P TL+ ++ L SEL + +A G+S +LL+ ++ + T +
Sbjct: 61 AYELMPLATLIGGLLSLGRLAADSELTVIKAGGVSTRKLLSVLSQFGLIFALATAALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA + + ++ NG + W++ +Q+ I +++LP+ H
Sbjct: 121 IAPALNQKAENIKAAA-INGKISTGNTGLWLK----EQNSIINIREMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
+ KN+++ +A+ A++ + +LK + G ++ +S L I +K + +
Sbjct: 175 ERNDKNELVQATEAESAVLNDDGSWQLKNIRRSTLGEDKVETSSAAEENLPISVKRNLME 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ +S +N + + +V P+ M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTAYISHLE-NNRQNTQIYAIALWHKLVYPVAAWVMALVALAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + + P A ++P L + I ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHFAGRLFGFTARLYGVPPFLAGILPTALFALIGIWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|229521564|ref|ZP_04410982.1| hypothetical protein VIF_002100 [Vibrio cholerae TM 11079-80]
gi|229341158|gb|EEO06162.1| hypothetical protein VIF_002100 [Vibrio cholerae TM 11079-80]
Length = 356
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 72/367 (19%), Positives = 139/367 (37%), Gaps = 21/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N FI K+ EN
Sbjct: 120 EWGAPQAQKMARDMRAFATSGGAIMSVRTGVWARDAND----FIFIAKV--ENEQLYGLN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKVV--------EYQYGRIPIDKNSTTLNIP 231
D+ K+ ++ + N++ +K V E +P + T+L P
Sbjct: 174 LWRFDENKKLSTVIFSEQVDYVANNEWLMKDAVLTRLVNDIEISKESLPEYRWRTSL-AP 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + + + + S + + R E + + P+ + M L+A
Sbjct: 233 DKLAVVTVKPEELSLTGLSDYVHYLKASEQ----DSSRYELALWRKVTQPISIAVMMLMA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y L P+ AL P ++ ++++
Sbjct: 289 LSFIFGPLRSVTMGARILSGVIAGFSFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIA 348
Query: 352 ILILLQK 358
+ +L +K
Sbjct: 349 LGLLGRK 355
>gi|90580730|ref|ZP_01236533.1| putative permease [Vibrio angustum S14]
gi|90437998|gb|EAS63186.1| putative permease [Vibrio angustum S14]
Length = 357
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 126/366 (34%), Gaps = 18/366 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + T L + L +I E ++G+ +Y + + +P
Sbjct: 1 MFKILDWYIGRTIIATFSLTLSTLVGLSAIIKYVEQLRKVGQ-GSYDLLKALYFVLLSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L +SELV+ +A G S + + ++ + I VL+
Sbjct: 60 QDIIMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSTLKTAVPMMIVVVLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ + W G + W + + FI ++ N + +
Sbjct: 120 QWGAPQAQKMAREYRSAWVYGGSVIAAQNGVWAK----NDNSFIYMGRVHDLNKV-DVVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNS-------TTLNIPI 232
D K ++ A A + V NS T P
Sbjct: 175 IWQFDNKGQLDDVTSAKRASYDKAKGWTMHDVTITDMTGSNQLTNSHIANKHWETTLTPD 234
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ E+ + Y + + + + R E F+ + P+ + M L+A
Sbjct: 235 KLAVVTVKPEELSLSGLYHYVNYLKETKQ----DASRYELAFWRKALQPVSIAVMMLLAL 290
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS V G+ GF Y + L P+ AL P + + ++I
Sbjct: 291 SFVFGPLRSVTMGARVLSGVIFGFAFYISDQVFGPMILVYRLPPILGALGPSLAFLFITI 350
Query: 353 LILLQK 358
+L +K
Sbjct: 351 YLLRRK 356
>gi|147674275|ref|YP_001217997.1| hypothetical protein VC0395_A2081 [Vibrio cholerae O395]
gi|153215714|ref|ZP_01950095.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|153831207|ref|ZP_01983874.1| putative membrane protein [Vibrio cholerae 623-39]
gi|229513426|ref|ZP_04402890.1| hypothetical protein VCB_001071 [Vibrio cholerae TMA 21]
gi|229524482|ref|ZP_04413887.1| hypothetical protein VCA_002077 [Vibrio cholerae bv. albensis
VL426]
gi|254291417|ref|ZP_04962209.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|297581346|ref|ZP_06943269.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|124114632|gb|EAY33452.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|146316158|gb|ABQ20697.1| putative membrane protein [Vibrio cholerae O395]
gi|148873314|gb|EDL71449.1| putative membrane protein [Vibrio cholerae 623-39]
gi|150422607|gb|EDN14562.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|227014389|gb|ACP10599.1| putative Inner membrane protein [Vibrio cholerae O395]
gi|229338063|gb|EEO03080.1| hypothetical protein VCA_002077 [Vibrio cholerae bv. albensis
VL426]
gi|229349303|gb|EEO14259.1| hypothetical protein VCB_001071 [Vibrio cholerae TMA 21]
gi|297534184|gb|EFH73022.1| conserved hypothetical protein [Vibrio cholerae RC385]
Length = 356
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 72/367 (19%), Positives = 139/367 (37%), Gaps = 21/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N FI K+ EN
Sbjct: 120 EWGAPQAQKMARDMRAFATSGGAIMSVRTGVWARDAND----FIFIAKV--ENEQLYGLN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKVV--------EYQYGRIPIDKNSTTLNIP 231
D+ K+ ++ + N++ +K V E +P + T+L P
Sbjct: 174 LWRFDENKKLSTVIFSEQVDYVANNEWLMKDAVLTRLVNDIEISKESLPEYRWRTSL-AP 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + + + + S + + R E + + P+ + M L+A
Sbjct: 233 DKLAVVTVKPEELSLTGLSDYVHYLKASEQ----DSSRYELALWRKVTQPISIAVMMLMA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y L P+ AL P ++ ++++
Sbjct: 289 LSFIFGPLRSVTMGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIA 348
Query: 352 ILILLQK 358
+ +L +K
Sbjct: 349 LGLLGRK 355
>gi|313668050|ref|YP_004048334.1| hypothetical protein NLA_7120 [Neisseria lactamica ST-640]
gi|313005512|emb|CBN86948.1| conserved hypothetical integral membrane protein [Neisseria
lactamica 020-06]
Length = 356
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 64/361 (17%), Positives = 149/361 (41%), Gaps = 12/361 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + T+Y LL + L ++ +G+ +Y I A ++P
Sbjct: 2 NLISRYIIRQMTAMTVYTLLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P TL+ ++ L SEL + +A G+S +LL+ ++ + T +
Sbjct: 61 AYELMPLATLIGGLLSLGRLAADSELTVIKAGGVSTRKLLSVLSQFGLIFALATAALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA + + ++ NG + W++ +Q+ I +++LP+ H
Sbjct: 121 IAPALNQKAENIKAAA-INGKISTGNTGLWLK----EQNSIINIREMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQ 238
+ KN+++ +A+ A++ + +LK + G ++ ++ L I +K + +
Sbjct: 175 ERNDKNELVQATEAESAVLNDDGSWQLKNIRRSTLGEDKVETSTAAEENLPISVKRNLME 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ +S +N + + +V P+ M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTAYISHLE-NNRQNTQIYAIALWHKLVYPVAAWVMALVALAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + + P A ++P L + I ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHFAGRLFGFTARLYGVPPFLAGILPTALFALIGIWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|15642495|ref|NP_232128.1| hypothetical protein VC2499 [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|227082618|ref|YP_002811169.1| putative Inner membrane protein [Vibrio cholerae M66-2]
gi|229507443|ref|ZP_04396948.1| hypothetical protein VCF_002672 [Vibrio cholerae BX 330286]
gi|229509632|ref|ZP_04399113.1| hypothetical protein VCE_001032 [Vibrio cholerae B33]
gi|229516757|ref|ZP_04406203.1| hypothetical protein VCC_000774 [Vibrio cholerae RC9]
gi|229606949|ref|YP_002877597.1| hypothetical protein VCD_001858 [Vibrio cholerae MJ-1236]
gi|254851044|ref|ZP_05240394.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255744522|ref|ZP_05418474.1| putative membrane protein [Vibrio cholera CIRS 101]
gi|298500670|ref|ZP_07010474.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
gi|9657080|gb|AAF95641.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|227010506|gb|ACP06718.1| putative Inner membrane protein [Vibrio cholerae M66-2]
gi|229345820|gb|EEO10792.1| hypothetical protein VCC_000774 [Vibrio cholerae RC9]
gi|229353106|gb|EEO18045.1| hypothetical protein VCE_001032 [Vibrio cholerae B33]
gi|229354948|gb|EEO19869.1| hypothetical protein VCF_002672 [Vibrio cholerae BX 330286]
gi|229369604|gb|ACQ60027.1| hypothetical protein VCD_001858 [Vibrio cholerae MJ-1236]
gi|254846749|gb|EET25163.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255738047|gb|EET93440.1| putative membrane protein [Vibrio cholera CIRS 101]
gi|297540839|gb|EFH76896.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
Length = 356
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 72/367 (19%), Positives = 139/367 (37%), Gaps = 21/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N FI K+ EN
Sbjct: 120 EWGAPQAQKMARDMRAFATSGGAIMSVRTGVWARDAND----FIFIAKV--ENEHLYGLN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKVV--------EYQYGRIPIDKNSTTLNIP 231
D+ K+ ++ + N++ +K V E +P + T+L P
Sbjct: 174 LWRFDENKKLSTVIFSEQVDYVANNEWLMKDAVLTRLVNDIEISKESLPEYRWRTSL-AP 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + + + + S + + R E + + P+ + M L+A
Sbjct: 233 DKLAVVTVKPEELSLTGLSDYVHYLKASEQ----DSSRYELALWRKVTQPISIAVMMLMA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + G+ +GF Y L P+ AL P ++ ++++
Sbjct: 289 LSFIFGPLRSVTMGARILSGVIAGFSFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIA 348
Query: 352 ILILLQK 358
+ +L +K
Sbjct: 349 LGLLGRK 355
>gi|261345121|ref|ZP_05972765.1| membrane protein, YjgP/YjgQ family [Providencia rustigianii DSM
4541]
gi|282566809|gb|EFB72344.1| membrane protein, YjgP/YjgQ family [Providencia rustigianii DSM
4541]
Length = 358
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 79/367 (21%), Positives = 145/367 (39%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L + L L + L +I E ++G+ +Y+ V VP
Sbjct: 1 MFGVLDRYIGRTILNSILMALFLLVSLSGIIKFVEQLRKVGD-GDYTAMSAGVFTLLTVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ +++ L SELV+ +A G + Q+ + +I L I +L+
Sbjct: 60 KDIDIFFPMAALLGSLLGLGALASRSELVVMQASGFTRLQIAMSVMKTAIPLVIVAMLIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +G++ + + +D W + ++ FI + I N+I +D +
Sbjct: 120 EWVAPAGDQWARNYRAEKIVGNSLVATDSGMWAKDAHD----FIYIQSIKDANNI-QDVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IP 231
D + K+ A +K L +V E S L P
Sbjct: 175 IYRFDDQRKLKSVMFAARGTYDANKKLWVLSQVDESILSSQQKITGSQRLTYEWQTNLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ ++ + R Y+ I + S + + + I+ PL M L+A
Sbjct: 235 EKLGIVSLHADSLSIRGLYQYITYLKESGQLASV----YQLSMWQKILAPLSAAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S R+ + V GI GF+ Y + ++ + PV AA +P +L + +S
Sbjct: 291 VSFIFGPLRTVPMGVRVVSGIVGGFLFYILNQGFGNWSLVYSIPPVIAAALPSVLFLGVS 350
Query: 352 ILILLQK 358
I +L+++
Sbjct: 351 IFLLVKR 357
>gi|291532164|emb|CBL05277.1| Predicted permeases [Megamonas hypermegale ART12/1]
Length = 361
Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats.
Identities = 75/364 (20%), Positives = 152/364 (41%), Gaps = 15/364 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K + T ++ + + Q S S L +P II
Sbjct: 3 ILDKYILKETIMTFIFGICAFSAVFLGSGTLLRIAQYITQYGASFSAIVRLIIYSLPGII 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ F L+ SE++ +A G+S +L+ P + S+ + IF++ +
Sbjct: 63 VWTFPMSMLLAALLTFGRLSGNSEIIAMKACGVSFKRLVTPVIAFSLGVSIFSIGFNEYV 122
Query: 124 ATSGEKIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + DL++ + + N + + I QI + + A+K E ++ +
Sbjct: 123 VPASNQAYADLVRYEIQGNTSPESQEHIIIKQIQDGNIQRLVYARKYDAETGNLDNLSIQ 182
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLN---IPIKMD 235
++ K++ ++A+ A D+ + V Y + ++ +S L P ++
Sbjct: 183 EF-EQGKMVRVENAEYAKWSVDEWVMYNGVLYDLSQPNTERMMKFDSQVLPINQTPKQII 241
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
QK ++ + E I M KS + E + Y +P+ + LI A +
Sbjct: 242 KSQKKPDEMTIKELREQINIM----KSQYVDTKKLEIELYQRFTVPMASLMFALIGAPLG 297
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ +RS+ I + YT++T+ + G++ + PV A IP I+T+ I L
Sbjct: 298 IQPNRSSSSIGFGISIIIIF-IYYTLMTLAGAIGQNSFIPPVIAVWIPNIVTLIAGIY-L 355
Query: 356 LQKE 359
++KE
Sbjct: 356 IRKE 359
>gi|77165378|ref|YP_343903.1| permease YjgP/YjgQ [Nitrosococcus oceani ATCC 19707]
gi|254434004|ref|ZP_05047512.1| putative permease, YjgP/YjgQ family [Nitrosococcus oceani AFC27]
gi|76883692|gb|ABA58373.1| permease YjgP/YjgQ [Nitrosococcus oceani ATCC 19707]
gi|207090337|gb|EDZ67608.1| putative permease, YjgP/YjgQ family [Nitrosococcus oceani AFC27]
Length = 354
Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats.
Identities = 69/361 (19%), Positives = 125/361 (34%), Gaps = 16/361 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K + TL L + L + +GE +Y + +P
Sbjct: 2 KILDRYIAKAVISYTLLVLFILIALYTFLQFVTELEDVGE-GDYGVMGALRYTTYSIPQH 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I ++P L+ +++ L SELV RA G S+ ++ + ++ I TVL+
Sbjct: 61 IYDLLPVAALLGSVLGLGYLAGQSELVAMRAAGFSVGRITLSALATGMIFVIVTVLMGEV 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A ++ L K + W + + F ++LP +E
Sbjct: 121 VAPPAQQAANKLRSLAKTGHLSEDGGQGFWSR----NGNNFNHVGRVLPNGQ-YEYIEIF 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI------PIKMDG 236
D + ++ A AI + D L V + I + P +D
Sbjct: 176 EFDDQRRLRIVTQAARAIYHKDGWHLYDVTQRLISTKGITTRRLDEALWESGLNPEMLDV 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+Q ++ Y I + S ++ + F+ IV P + M +A
Sbjct: 236 VMVDPQQLSAWGLYRYIGYLQKSKQA----AEQYRQAFWSKIVAPFSTLIMMFLAIPFIF 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + G G + + G L P A P +L ++L +++L
Sbjct: 292 GPLRSVSVGQRILVGALVGIGFFLFNRLFNQLGLVFDLPPWLGAAFPSLLCLALGVVMLR 351
Query: 357 Q 357
+
Sbjct: 352 R 352
>gi|323140935|ref|ZP_08075848.1| permease, YjgP/YjgQ family [Phascolarctobacterium sp. YIT 12067]
gi|322414673|gb|EFY05479.1| permease, YjgP/YjgQ family [Phascolarctobacterium sp. YIT 12067]
Length = 363
Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats.
Identities = 70/364 (19%), Positives = 136/364 (37%), Gaps = 16/364 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY K L ++ + + + Q + A L +P +I
Sbjct: 5 LLDRYVLKELLYPFVFGIAAFSSIFIASTMLFKITQYMTKYGAPLETVARLFMYNLPEVI 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ F L+ +SE+ +A G+S ++++ P +V + +F+++ +
Sbjct: 65 NYTFPMSMLLAALMAFGKLSGSSEITAMKAGGVSYYRIVAPVLVVGFFVSMFSMVWAEKV 124
Query: 124 ATSGEKIG-IDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + I L ++ + N + I IS Q A K + D T
Sbjct: 125 VPTSKAKASIILNEEIRHNTRPTTQNHIIIKTISGDTQR-VTYANKFDEKLGKMTDITIE 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN--------IPIKM 234
+K KI + A N ++ + ++S P ++
Sbjct: 184 EFNK-GKIARIQTAKEGYWENGSWRIVDGNVFALDDKDGVQSSAKFKEQIIPLNFSPKQI 242
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
QK E+ R E I + + S R + + I IPL +I A +
Sbjct: 243 SWEQKEPEEMTIRELREYISMLEEQHTS----AARQWCEIFMRINIPLASFFFAMIGACL 298
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ R++ I + I F+ Y I+T GK G + P+ A +P IL + + + +
Sbjct: 299 GTQKQRTSSS-IGLGISIIVIFIYYAIMTFTTGLGKGGAMPPLLACALPNILCLGVGVYL 357
Query: 355 LLQK 358
+ +K
Sbjct: 358 MKKK 361
>gi|330448736|ref|ZP_08312383.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492927|dbj|GAA06880.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 357
Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats.
Identities = 72/366 (19%), Positives = 126/366 (34%), Gaps = 18/366 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + T+ L + L +I E ++G+ +Y + + +P
Sbjct: 1 MFKILDWYIGRTIIATSALTLSTLVGLSAIIKYVEQLRKVGQ-GSYDLLKALYFVLLSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L +SELV+ +A G S + + ++ + I VL+
Sbjct: 60 QDIIMFFPMAVLLGALIGLGMLASSSELVVMQASGFSKLDIGLSTLKTAVPMMIIVVLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ + W G + W + N FI ++ N + +
Sbjct: 120 QWGAPQAQKMAREYRSAWVYGGSVIAAQSGVWAKNDND----FIYMGRVHDLNKV-DVVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYND-KVKLKKVVEYQYGRIPIDKNS-------TTLNIPI 232
D K K+ A A + V NS T P
Sbjct: 175 IWKFDNKGKLEDVTSAKTASYDKSTGWTMHDVTITDTAGNSKLTNSHVASMKWDTTMTPD 234
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ E+ Y + + S + R E F+ + P + M L+A
Sbjct: 235 KLAVVTVKPEELPLSGLYNYVSYLKESKQ----DASRYELAFWRKALQPFSIAVMMLLAL 290
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS V G+ GF Y + L P+ AL P ++ + ++I
Sbjct: 291 SFVFGPLRSVTMGARVLSGVIFGFAFYISDQVFGPMILVYRLPPIIGALGPSLVFLFITI 350
Query: 353 LILLQK 358
+L +K
Sbjct: 351 YLLRRK 356
>gi|312884632|ref|ZP_07744335.1| hypothetical protein VIBC2010_15702 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367724|gb|EFP95273.1| hypothetical protein VIBC2010_15702 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 356
Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats.
Identities = 68/366 (18%), Positives = 126/366 (34%), Gaps = 19/366 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y K + TT L + L +I E ++GE Y + + +P
Sbjct: 1 MFKILDLYIGKTLIATTSLVLATFVGLSAIIKYVEQVRKVGE-GTYDLIQALFFVILSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + ++ L + L+
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLNIGMSVLKTAVPLMVLVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G W + +N FI K+ +
Sbjct: 120 QWGAPQAQKMARDLRTFATSGGALMSVRTGVWARDAND----FIFINKVDDD--KIYGLN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKVVEYQYG-------RIPIDKNSTTLNIPI 232
+ + ++ A + + +K + T P
Sbjct: 174 MWRFNDQKQLSQTLFAKEVDYVSENIWVMKDAEVTDMEGEVKLEKHFLKEYEWKTSLAPD 233
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ E+ + YE + + S + R E F+ + PL + M L+A
Sbjct: 234 KLAVVTVKPEELSLGGLYEYVSYLKSSEQ----DPSRYELAFWRKVTQPLSIGVMMLMAL 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + G+ +GF Y + P+ A++P + + ++I
Sbjct: 290 SFIFGPLRSVTMSARILSGVIAGFTFYISSEFFGPLSLVYNIPPIFGAIMPSCVFLLIAI 349
Query: 353 LILLQK 358
+L +K
Sbjct: 350 FLLQRK 355
>gi|119899192|ref|YP_934405.1| integral membrane protein [Azoarcus sp. BH72]
gi|119671605|emb|CAL95518.1| probable integral membrane protein [Azoarcus sp. BH72]
Length = 358
Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 59/366 (16%), Positives = 136/366 (37%), Gaps = 17/366 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL RY K T L+ + L D + +G+ Y + + + A VP
Sbjct: 1 MSKILSRYLAKEIFGATATVLVAFLGLFAFFDFINELDSVGK-DGYQLYQAVIYVAMIVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ ++ L R SE+ + RA G+S W++L + + + T +
Sbjct: 60 GRVYELLPIAVLIGSLYALTTLARHSEITVMRASGLSTWRMLRILGLIGSVFVVLTFVFG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA E ++ Q+ W++ I + + P+ E
Sbjct: 120 EYIAPPAESAAQQWRLVATNSAVSQQLRSGLWVK----DGAQVINVRTLRPDRS-MEHVR 174
Query: 181 SITIDKKNKIIHRKDADLAIIYN-DKVKLKKVVEYQY-GRIPIDKNSTTL-----NIPIK 233
++ + +A + + +L + ++ + ++ ++ P
Sbjct: 175 IYAFNEHYGLESISEAATGVYDGEGQWRLNGIQRTRFTDERTVLEHEDSIIWRSELTPEV 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ E+ + + + ++ + + + + R E + +V P ++ M +A
Sbjct: 235 LSVLMVVPERMSVANLWAYVRHLRENRQ----NADRYEIALWKKLVYPFAVLVMLALALP 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ R + V G+ G + + + + G PV AAL P ++ ++ + +
Sbjct: 291 FAFTHDRMGGVSVKVFLGVMLGIGFHLLNGLASNLGVINAWPPVLAALTPSLVFLATAAV 350
Query: 354 ILLQKE 359
+L E
Sbjct: 351 MLYSVE 356
>gi|330827963|ref|YP_004390915.1| putative permease [Aeromonas veronii B565]
gi|328803099|gb|AEB48298.1| Predicted permease [Aeromonas veronii B565]
Length = 356
Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 68/365 (18%), Positives = 133/365 (36%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M GIL RY + + L + + L +I E +G+ NY + +P
Sbjct: 1 MFGILDRYIGRVIFMSILLCEITLVGLAGLIKYVEQLKSVGD-GNYDMINALYYVLLSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
P L+ ++ L +SELV+ +A G S ++ + +I L I L+
Sbjct: 60 KEAVLFFPLAALLGGLIGLGQLATSSELVVMQAAGRSKISIVMAALKTAIPLMIMVGLMG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +++ D+ G S W + + F+ + + T
Sbjct: 120 EYVAPIAKRMADDIKAGALSEGRLTVSAYGVWAR----DGNNFVNINGVRNDGA-LTGIT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS-------TTLNIPIK 233
+ K+I A + LK+ ++ ++ ++ P +
Sbjct: 175 LYRFTPERKLIDVVQAQEGVFERHHWLLKQTQVTRFDDPAQIRSEQHDKMEWSSELTPKQ 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ E + + I + + + R + + + ++ PL +VAM L+A+S
Sbjct: 235 LGVVSIDPENLSVSGLLDYIGYLDANKQ----DAGRYKLEMWRKLLSPLSVVAMILLASS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + GI +GF +Y + + P+ AA+ P +L +S
Sbjct: 291 FIFGPLRSVSMGARMLMGIMTGFAVYVSDRVFGPISLVYAVPPILAAIAPSLLFGGISFY 350
Query: 354 ILLQK 358
IL +K
Sbjct: 351 ILSRK 355
>gi|229588598|ref|YP_002870717.1| putative ABC transporter membrane protein [Pseudomonas fluorescens
SBW25]
gi|229360464|emb|CAY47321.1| putative ABC transport system, membrane protein [Pseudomonas
fluorescens SBW25]
Length = 359
Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 71/365 (19%), Positives = 128/365 (35%), Gaps = 23/365 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L L L + L + + + + Y++ A P +
Sbjct: 4 LDRYIGSSVLIAILAVLGIILGLASLFAFIDEVGNVSD--TYTVWDVLSYVALTAPRRLY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P L+ ++ +L +SEL I RA G+SI +++ + +LL +VL+ +A
Sbjct: 62 DMMPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMACSVLIGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + +GD Q S W + + FI + P + T T
Sbjct: 122 PPAETTAQANRALAQGSGDAQSSKHGLWHRQ----GEEFIHINAVQPGG-LLIGVTRYTF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI------------PI 232
DK+ ++ A A +K +L V + I N+ T I P
Sbjct: 177 DKERHLLESSFAKRAQYSGEKWQLSDVTTTYFRNIGQGTNARTEVINVPSEEWDIALKPE 236
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
++ E + I + +N R F+ ++ P++ A+ L+A
Sbjct: 237 LLNTVVMIPESLPISGLWSYIHYLKDQGLNNG----RYWLAFWVKVLQPVVTAALVLMAI 292
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS V G+ GF ++ P+ A L+P +
Sbjct: 293 SFIFGPLRSVTLGQRVFTGVLVGFTFRIAQDLLGPSSLVFGFSPLFAVLVPTAICALAGF 352
Query: 353 LILLQ 357
+L +
Sbjct: 353 WLLRR 357
>gi|220932585|ref|YP_002509493.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
gi|219993895|gb|ACL70498.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
Length = 365
Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 59/364 (16%), Positives = 137/364 (37%), Gaps = 10/364 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I++RY + + L+ + + D+ ++ + L ++P I
Sbjct: 2 KIIYRYLTRELIMPFLFGVAAFTAIFIGTDILFTLTRLYNNFGVEFTTLVQLFFLKLPPI 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I P TL+ ++ F L+ E+ RA G+S+++++ P ++ +++ + T++V
Sbjct: 62 IVLTFPMATLMGTLMSFGRLSGDGEITAFRAGGVSVYKIVIPSLLVGLIMSVTTIMVNEM 121
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ---DIFIGAKKILPENHIWEDF 179
+ + ++ + K+ + + + + D + + E I D
Sbjct: 122 VVPRANYLYDQIVWEIKNGRKMPATQYDLTLTPLDRKYRRPDYILYTHRFNGETGIMNDV 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR----IPIDKNSTTLNIPI-KM 234
+K + A A+ DK Y + + N + PI
Sbjct: 182 YLQDYEK-GVPVTLIKARKAVWQGDKWHFYNGNIYYFKEGERVPALKFNEYVIKQPIYTP 240
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
K ++ SF E+ + + F + + +++ I IP L+AA +
Sbjct: 241 RRIGKMNKDIEDMSFKELGEYIQFLEE-QGKDTFEERVKYHQKIAIPFASFIFALLAAPL 299
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ RS + I F+ YTI+T+ + G+ G + P A + + + + +
Sbjct: 300 GIKPRRSGGTATGMGLSIIVIFIYYTIMTLGSALGERGTISPFFGAWLQNFIFLIVGGYM 359
Query: 355 LLQK 358
+ +
Sbjct: 360 IYRM 363
>gi|145300688|ref|YP_001143529.1| permease [Aeromonas salmonicida subsp. salmonicida A449]
gi|142853460|gb|ABO91781.1| predicted permease [Aeromonas salmonicida subsp. salmonicida A449]
Length = 356
Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats.
Identities = 73/365 (20%), Positives = 132/365 (36%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M GIL RY + + L L + L +I E +GE NY + +P
Sbjct: 1 MFGILDRYIGRVIFMSILLCELTLVGLAALIKYVEQLKSVGE-GNYDMINALYYVLLSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
Q P L+ ++ L +SELV+ +A G S ++ + +I L I L+
Sbjct: 60 KEAVQFFPLAALLGGLIGLGQLATSSELVVMQAAGRSKISIVMAALKTAIPLMILVGLMG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +++ D+ G S W + + F+ + + T
Sbjct: 120 EYVAPIAKRMADDVKAGALSEGRLTVSAYGVWAR----DGNNFVNINGVRNDGA-LTGIT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIK 233
+ K+I A + LK+V ++ + T P +
Sbjct: 175 LYRFTPERKLIDILQAREGVFEQHHWLLKQVQITRFDDPAQILSETQAQMEWSSELTPKQ 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ E + I + + + R + + + ++ PL +VAM L+A+S
Sbjct: 235 LGVVSIDPENLPVAGLLDYIGYLDANKQ----DAGRYKLEMWRKLLSPLSVVAMILLASS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + GI +GF +Y + + P+ AA+ P +L +S
Sbjct: 291 FIFGPLRSVSMGARMLMGIMTGFAVYVSDRVFGPISLVYAVPPILAAIAPSLLFGGISFY 350
Query: 354 ILLQK 358
IL +K
Sbjct: 351 ILSRK 355
>gi|327481778|gb|AEA85088.1| permease [Pseudomonas stutzeri DSM 4166]
Length = 353
Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats.
Identities = 63/360 (17%), Positives = 129/360 (35%), Gaps = 19/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L + L + + + NY + P +
Sbjct: 4 LDRYIGIHVFLAILTVLGIIVGLALLFAFIDELGDVQ--GNYGLGDALQYVLLTSPRRLY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P L+ ++ L +SEL I RA G+S+ +++ + ++L + +L+ +A
Sbjct: 62 DMLPMAALIGCLIGLGTLASSSELTIMRAAGVSLGRIVLSVMKPMLVLLVAGILIGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E I + G+ Q S W + N F+ + P + T
Sbjct: 122 PLTEDIAQARRSLAQGAGEAQSSKRGLWHRQENE----FVHVNAVQPGG-VLVGVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-------GRIPIDKNSTTLNIPIKMDGF 237
D++ +++ A A D +L+ + + R P ++ L P +
Sbjct: 177 DEERRLLSSSFARRASYQGDHWRLENIATTHFRGDHTEVARAPEERWDVQL-TPQLLGTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + I + +N R F+ ++ P + VA+ L+A S
Sbjct: 236 VMEPEALSITGLWRYIHYLGEQG----LNNSRYWLAFWTKVLQPAVTVALVLLAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + G+ GF+ I ++ + P+ A ++P + + +L +
Sbjct: 292 PLRSVTLGQRIFTGVVVGFVFRIIQDLLGPASQVFGFSPLLAVVLPACVCALIGAWLLRR 351
>gi|290473525|ref|YP_003466395.1| putative transmembrane protein, transport [Xenorhabdus bovienii
SS-2004]
gi|289172828|emb|CBJ79599.1| putative transmembrane protein, transport [Xenorhabdus bovienii
SS-2004]
Length = 358
Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats.
Identities = 84/367 (22%), Positives = 143/367 (38%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L+T L L + L +I + ++G+ YS + VP
Sbjct: 1 MFGVLDRYIGRTILQTILMTLFTLVSLSGIIKFVDQLRKVGQ-GEYSAFAAGIYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IQ P L+ ++ L SELV+ +A G + Q+ + +I L T+++
Sbjct: 60 KDIQIFFPMAALLGGLLGLGALATRSELVVMQASGFTRLQVAGSVMKTAIPLVFLTMVIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE+I + Q G + W + N F+ K + +N D +
Sbjct: 120 EWVAPQGEQIARNYRSQKMFGGSLMSTAKGMWAKDGND----FVYIKSVDKDNA-LRDVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQY-------GRIPIDKNSTTLNIP 231
D K++ K A A+ N + KL +V E G I +L P
Sbjct: 175 IYHFDDNKKLLSVKYAATAVYDQNNRQWKLSQVEESDLRQIGRITGSQRISAEWKSLLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + + R + I + + R + + + PL + M L+A
Sbjct: 235 EKLGVVALDPDALSIRGLQQYITYLKQGQQ----DAGRYQLNMWKKVFAPLSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S RS + V GI +GF+ Y + I + P+ AL+P +L +S
Sbjct: 291 LSFIFGPLRSVAMGVRVIAGISTGFIFYVLNEIFGPLSLVYSMPPLLGALLPSLLFFVVS 350
Query: 352 ILILLQK 358
+ LL +
Sbjct: 351 VYFLLHR 357
>gi|15602062|ref|NP_245134.1| hypothetical protein PM0197 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12720420|gb|AAK02281.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 356
Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats.
Identities = 73/361 (20%), Positives = 137/361 (37%), Gaps = 10/361 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MMSTLDRYLGKSILGAIFATLIMLVGLSGIIKFVEQFRSVGK-GTYDIWQAILYTVLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELV+ +A G S ++ + ++ L I T+L+
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVVMQASGFSRLKIGFAVMKTALPLVILTMLIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + N FI K+I + D
Sbjct: 120 EWGIPQTEQFARDMRSKAISGGSLLSVKNGIWAKDGNE----FIYIKRITDDIA-LSDVY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR---IPIDKNSTTLNIPIKMDGF 237
+ ++ K A+ A K L ++ E +++ + + D
Sbjct: 175 IYRFAENRQLQQVKHANTATYQEGKWILHRLTESAISENEITTVNRVNAEWQTNLTPDKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + S S + ++F ++ + + E ++ + PL + M ++A S
Sbjct: 235 GIASLRPTSLSISGLSNYITFLRETGQ-ESKKFELTYWRKLFQPLSVGVMMMLALSFIFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + GI GF+ Y + I + P+A AL+P +L + ++ +L +
Sbjct: 294 PLRSVTAGARIVTGICFGFLFYVVNEIFGPLSLVYNVTPLAGALMPSVLFLLITWWLLSR 353
Query: 358 K 358
K
Sbjct: 354 K 354
>gi|330811513|ref|YP_004355975.1| permease [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
gi|327379621|gb|AEA70971.1| Putative permease [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 353
Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats.
Identities = 66/360 (18%), Positives = 128/360 (35%), Gaps = 19/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L L + L + + + + + Y+++ A P +
Sbjct: 4 LDRYIGSSVFMAILAVLGIILGLATLFAFIDEMSDVSD--TYTLTDVASYVLLTAPRRLY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P L+ ++ +L SEL I RA G+SI +++ + ++L + VL+ IA
Sbjct: 62 DMLPMAALIGCLIGLGSLASNSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGVLIGEYIA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ E + GD Q + W + + FI + P I T
Sbjct: 122 PATENTAQANRSLAQGGGDAQSAKHGLWHRQGDE----FIHINSVQPNG-ILYGVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKV-------VEYQYGRIPIDKNSTTLNIPIKMDGF 237
D + ++ A A D +L V + P ++ +++ P +
Sbjct: 177 DDQRHMLSSSFAKRANFAEDHWQLSDVTTTLFHDKRTEVVAAPQERWDVSIS-PQLLSTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + I ++ +N R F+ ++ PL+ A+ L+A S
Sbjct: 236 VMAPESLSITGLWGYIHYLADQGLNNG----RYWLAFWVKVLQPLVTAALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF ++ P+ A L+P + + +L +
Sbjct: 292 PLRSVTLGQRVFTGVLVGFTFRIAQDLLGPSSLVFGFSPLFAVLVPAGICALAGLWLLRR 351
>gi|117619151|ref|YP_858152.1| putative permease [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117560558|gb|ABK37506.1| putative permease [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 356
Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats.
Identities = 72/365 (19%), Positives = 131/365 (35%), Gaps = 17/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M GIL RY + + L L + L +I E +GE NY + +P
Sbjct: 1 MFGILDRYIGRVIFMSVLLCELTLVGLAALIKYVEQLKSVGE-GNYDMLSALYYVLLSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
P L+ ++ L +SELV+ +A G S ++ + +I L I L+
Sbjct: 60 KEAVLFFPLAALLGGLIGLGQLATSSELVVMQAAGRSKISIVMAALKTAIPLMILVGLMG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A +++ D+ G S W + + F+ + + T
Sbjct: 120 EYVAPIAKRMADDIKAGALSEGRLTVSAYGVWAR----DGNNFVNINGVRNDGA-LTGIT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------IPIK 233
+ K+I A + LK+V ++ + T P +
Sbjct: 175 LYRFTPERKLIDILQAQEGVFEQHHWLLKQVQVTRFDDPRQIMSETQPQMEWSSELTPKQ 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ E + I + + + R + + + ++ PL +VAM L+A+S
Sbjct: 235 LGVVSIDPENLPVAGLLDYIGYLDANKQ----DAGRYKLEMWRKLLSPLSVVAMILLASS 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS + GI +GF +Y + + P+ AA+ P +L +S
Sbjct: 291 FIFGPLRSVSMGARMLMGIMTGFAVYVSDRVFGPISLVYAVPPILAAIAPSLLFGGISFY 350
Query: 354 ILLQK 358
IL +K
Sbjct: 351 ILSRK 355
>gi|157374155|ref|YP_001472755.1| permease YjgP/YjgQ family protein [Shewanella sediminis HAW-EB3]
gi|157316529|gb|ABV35627.1| permease YjgP/YjgQ family protein [Shewanella sediminis HAW-EB3]
Length = 352
Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats.
Identities = 63/358 (17%), Positives = 131/358 (36%), Gaps = 16/358 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y + + ++ LL L +I + +G +Y++ + +P +
Sbjct: 3 ILDLYIARTIVSSSALCLLILTGLSGIIKWVDQLRLVGR-GSYTMLDAGIYVLFLIPRDL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ ++ L SELV+ ++ G+S WQ+ + +I L + + +
Sbjct: 62 EMFFPLGVLLGALIGMGMLASNSELVVMQSSGLSRWQITLSAMKTAIPLMLLIMALGEWG 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E+ +L G KS W + D+F+ ++ NH + T
Sbjct: 122 APVAEQKANELQATKLSGGSLIKSSRGIWAK----DGDLFVNIGEVEDINH-LGNITLYE 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL------NIPIKMDGF 237
D+ ++ A+ + ND +L V + + TL P K+
Sbjct: 177 FDETLSLVRTIHAEHGVYSNDHWRLMDVRQTDLTEDKVTLTDLTLYRWESTLTPDKLSVV 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + + + +N+ + R E + ++ P+ + M L+A S
Sbjct: 237 SVKPESLSIQGLMGYLDYLKVNNQ----DSARYELALWRKLLQPVTVGVMMLVALSFVFG 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R+ V G+ +GF Y I + A +P ++ + ++ +
Sbjct: 293 PLRTVTMGARVLLGVIAGFSFYISSEIFGPLTLVYGVPAFIGAGMPAVIFSAGAVYFI 350
>gi|258591110|emb|CBE67405.1| putative Permease YjgP/YjgQ [NC10 bacterium 'Dutch sediment']
Length = 362
Score = 208 bits (531), Expect = 7e-52, Method: Composition-based stats.
Identities = 56/365 (15%), Positives = 141/365 (38%), Gaps = 24/365 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K +L+ + L+ + L ++DL + ++ + S R+P
Sbjct: 8 ILDRYLAKEFLRICAFSLVIFLALSVIVDLFD---RLSRFLDVSGVVVIQYYIYRLPWFG 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q++P L+ + + R +EL+ + +SI++++ P +V +++ +++ I
Sbjct: 65 FQVMPVAVLLAALFSLGKMARHNELLAMKMGHLSIFRIVVPPLVLGLVVSFAALILGESI 124
Query: 124 ATSGEKIGIDLIQ--QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +D + K + ++ + W + + + F+ + + T
Sbjct: 125 VPRMNERALDAYRVKVQKVSPFQRTKNNDIWYR---AKGNRFLHISLLEAASGSIRGLTV 181
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKK--VVEYQYGRIPIDKNSTTLNI-----PIKM 234
+ ++ R DA A + + +L+ + + T L + P +
Sbjct: 182 FELSPDFRLARRIDAKEARWQDGQWRLQNGEISRTKPDGTFRVDPFTHLTLYLEEKPEDL 241
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ +E+ S E I++++ + R + + M I +
Sbjct: 242 AHVVREAEEMTSSELREYIERLA----KAGVSSVRYQVDLAAKGSTAFTNLVMAFIGIAF 297
Query: 295 SLEFSRSNQPRIIVAYG--IFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+L R+ + ++ G + + + + S G+ +L P+ AA +P +L + +
Sbjct: 298 AL---RTGKRGVMAWTGACVVAAVCYSILNSFSISLGRGDVLPPLVAAWLPNVLFTTAGL 354
Query: 353 LILLQ 357
+L+
Sbjct: 355 ASVLR 359
>gi|146283385|ref|YP_001173538.1| permease [Pseudomonas stutzeri A1501]
gi|145571590|gb|ABP80696.1| predicted permease [Pseudomonas stutzeri A1501]
Length = 353
Score = 208 bits (531), Expect = 7e-52, Method: Composition-based stats.
Identities = 62/360 (17%), Positives = 130/360 (36%), Gaps = 19/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L + L + + + +Y + P +
Sbjct: 4 LDRYIGIHVFLAILMVLGIIVGLALLFAFIDELGDVQ--GSYGLGDALQYVLLTSPRRLY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ ++ L +SEL I RA G+S+ +++ + ++L + +L+ +A
Sbjct: 62 EMLPMAALIGCLIGLGTLASSSELTIMRAAGVSLGRIVLSVMKPMLVLLVAGILIGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E I + G+ Q S W + N F+ + P + T
Sbjct: 122 PLSEDIAQARRSLAQGAGEAQSSKRGLWHRQENE----FVHVNAVQPGG-VLVGVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNSTTLNIPIKMDGF 237
D++ +++ A A D +L+ + + R P ++ L P +
Sbjct: 177 DEERRLLSSSFARRASYQGDHWRLENIATTHFRGDHTEVMRAPEERWDVQL-TPQLLGTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + I + +N R F+ ++ P + VA+ L+A S
Sbjct: 236 VMEPEALSITGLWRYIHYLGEQG----LNNSRYWLAFWTKVLQPAVTVALVLLAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + G+ GF+ I ++ + P+ A ++P + + +L +
Sbjct: 292 PLRSVTLGQRIFTGVVVGFVFRIIQDLLGPASQVFGFSPLLAVVLPACVCALIGAWLLRR 351
>gi|325295269|ref|YP_004281783.1| permease YjgP/YjgQ family protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065717|gb|ADY73724.1| permease YjgP/YjgQ family protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 354
Score = 208 bits (531), Expect = 7e-52, Method: Composition-based stats.
Identities = 83/363 (22%), Positives = 157/363 (43%), Gaps = 16/363 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY F L+ + LL M+L VID ++M I+ G + R+P
Sbjct: 1 MVKRLDRYVFIETLRYFVLTLLTFMVLFIVIDFV---SKMDTFLKSGIADGFLYVIYRLP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L ++IP TL+ +V N + ++EL + +A+GIS+++ P + + L I + L+
Sbjct: 58 LYTVRVIPIATLIATMVTLSNFSFSNELTVVKALGISVYRFSFPIIFLAFLASILSFLIG 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + + K+N + S W + + F+ + + P + +
Sbjct: 118 ELVVPKSISLSKSIYYKVKENKNFHVSGKSIWFK---KDEKTFVFMEYVNPAKSEAKRIS 174
Query: 181 SITIDKKNKIIHRKDADLAI-IYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPI---KMD 235
+ K+ R DA I I +D KLK E + + K + +N+ I +
Sbjct: 175 IFFLGKEFSPTKRIDALYGINIKDDIWKLKNCFERKLKELKTTKISEKEINLGIGKKDLI 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q +E +S Y++IK++ + + Y + I L+ + + +I +
Sbjct: 235 FTQIETETMSSFLLYKVIKQLKRAG----YDTTGYLVDLYSKLAISLLPLVVAVIGIPLG 290
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ R+ + +V FM TI S GKSG+L P +A P ++ +S+ +L+L
Sbjct: 291 VFNPRNKKGYTLVIAAALIVFMWITIS-FFSSLGKSGVLPPFYSAFAPEVMFLSIGLLLL 349
Query: 356 LQK 358
+
Sbjct: 350 ARM 352
>gi|91792233|ref|YP_561884.1| permease YjgP/YjgQ [Shewanella denitrificans OS217]
gi|91714235|gb|ABE54161.1| permease YjgP/YjgQ [Shewanella denitrificans OS217]
Length = 351
Score = 208 bits (531), Expect = 9e-52, Method: Composition-based stats.
Identities = 65/359 (18%), Positives = 134/359 (37%), Gaps = 18/359 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y + L T+ LL L +I + +G +Y++ + +P I
Sbjct: 2 ILDLYIARAILATSSLCLLILTGLSGIIKWVDQLRLVGR-GSYTMIDAGIYVLFLIPRDI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ ++ L +SELV+ +A G+S Q+ + ++ L + +++
Sbjct: 61 EMFFPMAVLLGALIGMGMLASSSELVVMQASGMSRLQISMSAMKTAVPLMLLVMVLGEWG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E+ +L G KS W + D+F+ ++ N + T
Sbjct: 121 APVAERSAKELQATKLSGGSLIKSHRGIWAK----DGDLFVNIGEVETVNS-LNNITLYE 175
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNSTTLNIPIKMDG 236
D+ K++ A A ++ +L++V + P+ +++L P K+
Sbjct: 176 FDEAMKLVKVIHAQEAQFKDEAWQLQQVKTTVFSDEKITLVEQPLQSWNSSL-TPDKLGV 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E + + + + + + + R + I+ P+ + M L+A S
Sbjct: 235 VSVKPEALSIQGLLDYLDYLEVNQQ----DPSRYNLALWRKIMQPVTIAVMMLVALSFVF 290
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R+ V G+ +GF Y I L A+ P +L + ++ +
Sbjct: 291 GPLRTVTMGARVLLGVVAGFGFYISNQIFGPMSIVYELPAAVGAIAPSLLFTTAAVYYI 349
>gi|167622904|ref|YP_001673198.1| permease YjgP/YjgQ family protein [Shewanella halifaxensis HAW-EB4]
gi|167352926|gb|ABZ75539.1| permease YjgP/YjgQ family protein [Shewanella halifaxensis HAW-EB4]
Length = 352
Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats.
Identities = 62/358 (17%), Positives = 127/358 (35%), Gaps = 16/358 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y + + T+ LL L +I + +G Y++ V +P I
Sbjct: 3 ILDFYIARTLISTSSLALLVLTGLSGIIKWVDQLRLVGR-GTYTMMDAGVYVLFLIPRDI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ ++ L SELV+ ++ G+S Q+ + +I L I +++ +
Sbjct: 62 ELFFPMAVLLGALIGMGMLASNSELVVMQSAGLSRLQITMSAMKTAIPLMIIVMMLTEWV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E ++ + G S+ W + D+F+ + + D T
Sbjct: 122 APVAELRAKEIKRTNISGGSLIDSNRGIWAK----DGDLFVNIGGA-ADINNLRDITLYE 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI------DKNSTTLNIPIKMDGF 237
D + AD A + +L V + ++ + P K+
Sbjct: 177 FDDTTTLTSTIHADSAEYKDKYWQLYDVRRTTLTDDRVVLTNLKEEKWVSSLTPEKLSVV 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + + + +N+++ R E + ++ P+ + M L+A S
Sbjct: 237 SVKPEALSIEGLLDYLDYLKSNNQAS----ERYELALWRKLLQPVTVAVMMLVALSFVFG 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R+ V G+ +GF Y I L +A +P ++ ++ +
Sbjct: 293 PLRTVTMGARVLLGVVAGFSFYICSEIFGPLSIVYGLPAFISAGMPALIFSVGALYFI 350
>gi|85374866|ref|YP_458928.1| permease [Erythrobacter litoralis HTCC2594]
gi|84787949|gb|ABC64131.1| predicted permease [Erythrobacter litoralis HTCC2594]
Length = 365
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 128/360 (35%), Gaps = 7/360 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y K ++ L L+ ++++ ++DL ++ + A RVP ++
Sbjct: 10 TLTLYLAKLFIVRILAVLVMLVLVLMMLDLLSTSGEILAVEGNGQGELLTYAGLRVPQLV 69
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+ +P+ L+ I+ LN+ SE++ +A G+S Q+L P ++ + L+ + + +
Sbjct: 70 QRFLPYSVLLATIITLIALNQNSEVIAMKAAGLSAHQVLAPLLLTAGLVALVSFGFNERV 129
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDFTS 181
T + + A+ + D T
Sbjct: 130 VTRATATLKAWEATEFGAVPPDSDVKA---NVYITDGTNILTARTVAGTGADIRLGDVTW 186
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-RIPIDKNSTTLNIPIKMDGFQKF 240
+I + A A + +L+ + + + + +
Sbjct: 187 YRRAPTGQIAEQVRAVSASFVDPGWQLENPQSFDITTANTTTSEAMVVGEGLTPAQIELE 246
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + F+ + + S ++ +++ + PL M L+ A + +R
Sbjct: 247 AIDPDAVPFWRLGSAI-DSYEAIGRRTAELRAKWWHKLSGPLSAFLMPLLGAVAAFGLAR 305
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S Q I G+ GF + + + G G P AA P +L + + +L++ E+
Sbjct: 306 SGQLFIRAVIGMGLGFAYFVVDNAALAMGSFGGYPPFLAAWAPFLLFLLVGETVLIRTEE 365
>gi|119773934|ref|YP_926674.1| hypothetical protein Sama_0797 [Shewanella amazonensis SB2B]
gi|119766434|gb|ABL99004.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
Length = 352
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 62/360 (17%), Positives = 130/360 (36%), Gaps = 16/360 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y + + T+ LL L +I + +G +Y++ V +P I
Sbjct: 3 ILDWYIARVLISTSSLCLLVLTGLSGIIKWVDQLRLVGR-GSYTMMDAGVYVLFLIPRDI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ ++ + SELV+ +A G S Q+ + ++ L + + + +
Sbjct: 62 EMFFPMAVLLGALIGLGMMAANSELVVMQASGQSRLQITVSAMKTAVPLMLLVMALGEWV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + E+ +L G KS W + D+F+ ++ + + + T
Sbjct: 122 APAAEQRANELKATMISGGSLIKSHRGIWAK----DGDLFVNIGEVS-DINTLGNITLYE 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN------STTLNIPIKMDGF 237
D++ ++ H +A A +++ V + I + + P K+
Sbjct: 177 FDQQERLNHVVNARRATFDGKAWQMQGVSKTHITEEAIVREDIDSELWQSSLTPDKLSVV 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + + + +++ R E + ++ P+ + M L+A S
Sbjct: 237 SVKPESLSIQGLMGYLDYLRINSQ----DPSRYELALWRKLMQPVTVAVMMLVALSFVFG 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ +GF Y I L A P +L ++ + +
Sbjct: 293 PLRSVTMGARVLLGVVAGFSFYICNEIFGPMTMVYQLPAFIGAGAPALLFAGAAVFYIRR 352
>gi|213855150|ref|ZP_03383390.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 356
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 67/359 (18%), Positives = 133/359 (37%), Gaps = 19/359 (5%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ K T + L + L +I + + G+ NY + VP IQ P
Sbjct: 7 YGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPKDIQIFFP 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L+ ++ L + SELV+ +A G + Q+ + +I L + T+ + +A GE
Sbjct: 66 MAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGE 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
++ + Q G + W + + F+ +++ + + + +
Sbjct: 126 QMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELAGISIYAFNDQR 180
Query: 189 KIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPIKMDGFQK 239
++ + A A + +L +V E S T++ P K+
Sbjct: 181 RLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVAL 240
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + +K + S + R + + I PL + M L+A S
Sbjct: 241 DPDALSISGLHNYVKYLKSSGQ----DAGRYQFNMWSKIFQPLSVAVMMLMALSFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + V GI GF+ Y + I + P+ AL+P +S+ ++L+K
Sbjct: 297 RSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 355
>gi|282850060|ref|ZP_06259442.1| YjgP/YjgQ family [Veillonella parvula ATCC 17745]
gi|282580249|gb|EFB85650.1| YjgP/YjgQ family [Veillonella parvula ATCC 17745]
Length = 363
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 67/357 (18%), Positives = 132/357 (36%), Gaps = 8/357 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L +Y K ++ L+ + + Q + +P I+
Sbjct: 3 LLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMQAFVLALPSIV 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ F L+ TSE+V+ RA G+S +L P + ++++ I V +
Sbjct: 63 ILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNEFV 122
Query: 124 ATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ ++ +Q N Q + I ++ + + AK E T
Sbjct: 123 VPRTNHMYQTIVREQIMKNASPQTQNHIVLKTMNGDELGTLMYAKSYNAETKQLSMITVQ 182
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDGF 237
+ K+ ++AD AI ++ + Y + +L I
Sbjct: 183 QFGEGGKLQQVENADTAIWNGQYWVMQNGIIYDLSAGNGVERTMKFKEQSLPIKSAPKDI 242
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q+ + + E+ ++ + K+ + + E + Y IPL L+ A + L+
Sbjct: 243 QQDQRKPEELTIKELRHQIR-AYKAAYTNANKLEMEMYQRFTIPLASFVFALVGAPLGLQ 301
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS+ + F+ Y ++T + GK G L V AALIP L I + +
Sbjct: 302 KQRSSSSIGFGISILII-FIYYGVMTFAGALGKGGALPTVLAALIPDTLGIIAGLYL 357
>gi|302342717|ref|YP_003807246.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
gi|301639330|gb|ADK84652.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
Length = 359
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 125/358 (34%), Gaps = 12/358 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y +LK + L+ + L + D E + E S + +VP II
Sbjct: 3 ILGLYVAGEFLKVFGFLLVAFVSLFTLFDFIEKVDNFHEAL-VPASTMLMYFLLQVPEII 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ I+ +++ E + ++ G+S+ + P V+ ++ + + T L+
Sbjct: 62 SLLSPLAVLLGTIIALGLMSKRGETIAIKSSGVSVMRFTLPIVLLALTITLSTALINEMA 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQK-SDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + S W + + P + +
Sbjct: 122 LPGTKARTNHIWNVMVEKRPSSAYSHEKFWFKGNG----SIYHIGLFDPLGQVLSNVVYY 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVK----LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
D + R DA A K L + Q G + + N+P + + F
Sbjct: 178 RFDDHFNLAERIDARRATYIGGKWLFFLGLHQQRLPQGGYSAVVFDELEKNLPERPEDFS 237
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S+ E+ + + + + R + + I P + V M LI ++L
Sbjct: 238 RLSKPSEEMGLAELSDHVGKVD-AEGYDTRRYQVDMHCKISYPFICVIMALIGIPLALFR 296
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKS-FGKSGILLPVAAALIPVILTISLSILIL 355
R + G+ + + +S FG G+L P+ AA +P + + ++
Sbjct: 297 ERGRALAPGIVVGMLVALVYWISFGYARSIFGYGGVLPPMMAAWLPNAMFALAGVGMI 354
>gi|294793349|ref|ZP_06758494.1| membrane protein, YjgP/YjgQ family [Veillonella sp. 6_1_27]
gi|294455780|gb|EFG24145.1| membrane protein, YjgP/YjgQ family [Veillonella sp. 6_1_27]
Length = 363
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 67/357 (18%), Positives = 132/357 (36%), Gaps = 8/357 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L +Y K ++ L+ + + Q + +P I+
Sbjct: 3 LLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMQAFVLALPSIV 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ F L+ TSE+V+ RA G+S +L P + ++++ I V +
Sbjct: 63 ILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNEFV 122
Query: 124 ATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ ++ +Q N Q + I ++ + + AK E T
Sbjct: 123 VPRTNHMYQTIVREQIMKNASPQTQNHIVLKTMNGDELGTLLYAKSYDAETKQLSMITVQ 182
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDGF 237
+ K+ ++AD AI ++ + Y + +L I
Sbjct: 183 QFGEGGKLQQVENADTAIWNGQYWVMQNGIIYDLSAGNGVERTMKFKEQSLPIKSAPKDI 242
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q+ + + E+ ++ + K+ + + E + Y IPL L+ A + L+
Sbjct: 243 QQDQRKPEELTIKELRHQIR-AYKAAYTNANKLEMEMYQRFTIPLASFVFALVGAPLGLQ 301
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS+ + F+ Y ++T + GK G L V AALIP L I + +
Sbjct: 302 KQRSSSSIGFGISILII-FIYYGVMTFAGALGKGGALPTVLAALIPDTLGIIAGLYL 357
>gi|254507394|ref|ZP_05119529.1| permease YjgP/YjgQ [Vibrio parahaemolyticus 16]
gi|219549650|gb|EED26640.1| permease YjgP/YjgQ [Vibrio parahaemolyticus 16]
Length = 356
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 66/366 (18%), Positives = 130/366 (35%), Gaps = 19/366 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L + L +I E +G+ +Y + +P
Sbjct: 1 MFKILDLYIGRTIIATTSMVLATLIGLSSIIRFVEQLRSVGK-GSYDLLNAFYFVLLGIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ L+ ++ L +SELV+ +A G S + + +I L + +L+
Sbjct: 60 RDIELFFAMSALLGALIGLGILASSSELVVMQASGYSKLDIGLSVLKTAIPLMLIIMLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ +L G W + + FI K+ +
Sbjct: 120 EWGAPQAQKMARELRSFSISGGQIVSVRAGVWARDVDD----FIFIGKVEDD--TLYGVK 173
Query: 181 SITIDKKNKIIHRKDADLA-IIYNDKVKLKKVVEYQYGRIPI-------DKNSTTLNIPI 232
D + K+ A A + +++ +K + T +P
Sbjct: 174 VWRFDDEKKLYQVMFAPEADYLGDNQWLMKNAEITDMADKVELAKSKVKEYAWKTTLVPD 233
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + E+ A Y+ + + S + R E + + P+ + M L+A
Sbjct: 234 KLAVVKVEPEELAMSGLYDYVTYLKASEQ----DASRYELALWRKVTQPISIAVMMLLAL 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS V G+ +GF Y + P A++P ++ ++L++
Sbjct: 290 SFVFGPLRSVSMGARVLSGVVAGFTFYISSEFFGPLTLVYGIPPAVGAVMPSLVFLTLAL 349
Query: 353 LILLQK 358
++L +K
Sbjct: 350 MLLRRK 355
>gi|227824355|ref|ZP_03989187.1| permease [Acidaminococcus sp. D21]
gi|226904854|gb|EEH90772.1| permease [Acidaminococcus sp. D21]
Length = 362
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 63/361 (17%), Positives = 128/361 (35%), Gaps = 15/361 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K L+ + + + Q S S L +P +I
Sbjct: 3 ILDKYILKQMLQPFAFGVAAFSTIFVASSFLFRVTQYITQYGASYSSLFRLFLCLMPEVI 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ L+ SE+ R+ G+S ++ P + ++ +F+V+ +
Sbjct: 63 NYTFPMSMLLASLLTMGQLSGNSEITAMRSGGMSFRRIAMPILAAGFVVSLFSVVWAEKV 122
Query: 124 ATSGEKIGIDLIQQ-WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ +IQQ K+N + D I IS Q A+ + + +D T
Sbjct: 123 VPPAKAEYERIIQQEIKNNTKPRTQDHILLKNISKGQLTRLTYARTFDEKAGVMKDITIE 182
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL--------NIPIKM 234
DK +++ + A N ++K + + T P +
Sbjct: 183 DWDK-GRVVRIQRTPEAKWQNGTWIMEKGTITEITNEEGLTRTMTFDKQVLPITETPKTI 241
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
QK ++ I + + + + Y +PL LI +
Sbjct: 242 TLDQKDPDEMTIGELKMYIGILERQYQ----PTSKYVMEIYSRFTVPLASFFFALIGVPL 297
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ R+ + + + + F+ Y+I+T M G+ G++ P AA +P L +
Sbjct: 298 GVQSQRAG-TSMGLGFSVVIIFIYYSIMTFMTGLGQGGVIPPFIAAAVPNFLCGCAGAYL 356
Query: 355 L 355
+
Sbjct: 357 I 357
>gi|269797613|ref|YP_003311513.1| permease YjgP/YjgQ family protein [Veillonella parvula DSM 2008]
gi|269094242|gb|ACZ24233.1| permease YjgP/YjgQ family protein [Veillonella parvula DSM 2008]
Length = 363
Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats.
Identities = 66/357 (18%), Positives = 132/357 (36%), Gaps = 8/357 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L +Y K ++ L+ + + Q + +P I+
Sbjct: 3 LLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMQAFVLALPSIV 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ F L+ TSE+V+ RA G+S +L P + ++++ I V +
Sbjct: 63 ILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNEFV 122
Query: 124 ATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ ++ +Q N Q + I ++ + + AK E T
Sbjct: 123 VPRTNHMYQTIVREQIMKNASPQTQNHIVLKTMNGDELGTLMYAKSYDAETKQLSMITVQ 182
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDGF 237
+ K+ ++AD AI ++ + Y + +L I
Sbjct: 183 QFGEGGKLQQVENADTAIWNGQYWVMQNGIIYDLSAGNGVERTMKFKEQSLPIKSAPKDI 242
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q+ + + E+ ++ + K+ + + E + Y IPL L+ A + L+
Sbjct: 243 QQDQRKPEELTIKELRHQIR-AYKAAYTNANKLEMEMYQRFTIPLASFVFALVGAPLGLQ 301
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS+ + F+ Y ++T + GK G L + AALIP L I + +
Sbjct: 302 KQRSSSSIGFGISILII-FIYYGVMTFAGALGKGGALPTLLAALIPDTLGIIAGLYL 357
>gi|87198520|ref|YP_495777.1| permease YjgP/YjgQ [Novosphingobium aromaticivorans DSM 12444]
gi|87134201|gb|ABD24943.1| permease YjgP/YjgQ [Novosphingobium aromaticivorans DSM 12444]
Length = 366
Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats.
Identities = 57/362 (15%), Positives = 129/362 (35%), Gaps = 10/362 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y K + + LL ++++ ++DL + P + R+P ++
Sbjct: 10 TLAIYIAKMFAVRIVAVLLMLVLVLQMLDLLSESGAVLAAPGNGQGELLTYVSLRMPQLV 69
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P+ L+ I+ LN+ SE++ +A G+S Q+L P + + + T I
Sbjct: 70 SRFLPYSVLLATIITLMTLNQNSEVIAMKAAGLSAHQVLAPLFLVAAATSVVTFAFNERI 129
Query: 124 ATS-GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW--EDFT 180
T + + + + W+Q + A+ + + +
Sbjct: 130 VTRSTSTLKAWQDVDYGPIPVESATKSNVWLQ----DGPNILFARSVAGQGKAMHMTGVS 185
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
D + A A N + ++ V + + + ++ Q
Sbjct: 186 WYRRDPTGMVTEIVTAPSASYANPGWRFREPVMFDVQSARKTALAASEVFAKSVEPVQVV 245
Query: 241 SE--QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S ++ ++ + + F + +++ I PL + M L+ A +
Sbjct: 246 ISRVDADAESLTQLTGSLA-AIRDAGFRTTELDGKWWHKISGPLSALLMPLLGAVAAFGL 304
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+RS + G+ GF + + G G P AA P +L + + +L++
Sbjct: 305 ARSGHLFVRAVIGMALGFAYFVFDNAALAMGNFGAYPPFLAAWAPFVLFLLIGETVLIRT 364
Query: 359 ED 360
E+
Sbjct: 365 EE 366
>gi|238019692|ref|ZP_04600118.1| hypothetical protein VEIDISOL_01566 [Veillonella dispar ATCC 17748]
gi|237863733|gb|EEP65023.1| hypothetical protein VEIDISOL_01566 [Veillonella dispar ATCC 17748]
Length = 363
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 66/357 (18%), Positives = 131/357 (36%), Gaps = 8/357 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L +Y K ++ L+ + + Q + +P I+
Sbjct: 3 LLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMKAFVLALPSIV 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ F L+ TSE+V+ RA G+S +L P + ++++ I V +
Sbjct: 63 ILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNEFV 122
Query: 124 ATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ ++ +Q N Q + I ++ + AK E T
Sbjct: 123 VPRTNNMYQTIVREQIMKNASPQTQNHIVLKTMNGNDLGTLMYAKSYNAETKKLSMITVQ 182
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDGF 237
+ K+ ++AD A+ ++ + Y + +L I
Sbjct: 183 QFGEGGKLQQVENADTAVWNGQYWVMQNGIIYDISAGDGVERTMKFKEQSLPIKSAPKDI 242
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q+ + + E+ ++ + K+ + + E + Y IPL L+ A + L+
Sbjct: 243 QQDQRKPEELTIKELRHQIK-AYKAAYTNANKLEMEMYQRFTIPLASFVFALVGAPLGLQ 301
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS+ + F+ Y ++T + GK G L V AALIP L I + +
Sbjct: 302 KQRSSSSIGFGISILII-FIYYGVMTFAGALGKGGALPTVFAALIPDTLGIIAGLYL 357
>gi|294102483|ref|YP_003554341.1| permease YjgP/YjgQ family protein [Aminobacterium colombiense DSM
12261]
gi|293617463|gb|ADE57617.1| permease YjgP/YjgQ family protein [Aminobacterium colombiense DSM
12261]
Length = 365
Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats.
Identities = 59/358 (16%), Positives = 144/358 (40%), Gaps = 9/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
GIL R+ +K + ++ ++ ++ DL M SI L +P +
Sbjct: 5 GILDRFIWKEMAGSFVFGVMAFTMVFVAGDLLFQIASMIIEKGISIGVVLRLFIYSLPEV 64
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P L+ ++ F L+ SE+V +A GIS ++L P +VGS+L+G+ +++
Sbjct: 65 IILTLPMACLLSALLTFGKLSTNSEIVALKASGISFQRILKPVIVGSLLVGLSALILNET 124
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ-DIFIGAKKILPENHIWEDFTS 181
+ + +L++ +++ + Q + I +K+ P +
Sbjct: 125 VVPFSNRAAENLMRFEVMREKPSVLKEQVFLRDESNGQLNRVIYIEKLQPRKGTMTNVLV 184
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDG 236
+K K+ + + K + +Q + ++ +
Sbjct: 185 QEFEK-GKLKRITVGKTGLWKDGKWWIDDGEVFQVTNGGKVELLFRFERQQFDLNLSPQQ 243
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
++ S + + S E++ ++ ++ + F+ +P V + ++ AS+ +
Sbjct: 244 VEQASRKPSEMSALELMAQIRLL-QAQGGNLAPLWVLFHLRFAVPWASVVLAILGASLGV 302
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R+ + + F+ Y ++++ K+FG++ + P+ AA +P +L + +
Sbjct: 303 RSHRTG-SGVGFGLSVMIVFVYYVVMSLCKAFGETEHMPPLLAAWVPNVLFLLVGGYF 359
>gi|118594057|ref|ZP_01551404.1| hypothetical protein MB2181_00275 [Methylophilales bacterium
HTCC2181]
gi|118439835|gb|EAV46462.1| hypothetical protein MB2181_00275 [Methylophilales bacterium
HTCC2181]
Length = 344
Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats.
Identities = 65/349 (18%), Positives = 135/349 (38%), Gaps = 16/349 (4%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
+ G + L D + +G+ Y IS +P I + +P L+ ++
Sbjct: 4 IFMIMFGLISLFAFFDFIQEIGDLGK-GGYGISHAMTFVILSIPGHIYETVPLAVLIGSM 62
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
L+ SEL + RA G SI ++ ++ IFT+L+ + IA + EK +
Sbjct: 63 YTIGQLSYNSELNVIRASGFSIKKIATSLMITGGFFAIFTLLIGDLIAPNSEKNAQQMKI 122
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
++ Q+ W++ F+ + +LP+ E D + + +A
Sbjct: 123 GLTNSVVGQEFSSGFWIKDGGN----FVNIENVLPDAT-LERINIYEFDSQFNLRTIVNA 177
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKNS------TTLNIPIKMDGFQKFSEQFASRSFY 250
+ + +L+ + + + K S +L P M+ E+ +S + Y
Sbjct: 178 EKGAYEEGEWRLENITQTILYENSVKKKSIPMGSWKSLMRPEMMNALIISPEKMSSFNLY 237
Query: 251 EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY 310
+ I + +N+ + + E + I+ PLM + M + A RS +
Sbjct: 238 KFISYLKINNQKS----TKYEVALWEKIIHPLMPLVMIIFAVPFGFLQERSGGKFFKMFI 293
Query: 311 GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
GI G T+++ P ++L+P ++ + L + ++ + E
Sbjct: 294 GIIIGIAYQITNTLIRHLSLLNDWQPFISSLVPTLIFLCLGLYLIKRFE 342
>gi|302037952|ref|YP_003798274.1| putative YjgP/YjgQ family permease [Candidatus Nitrospira defluvii]
gi|300606016|emb|CBK42349.1| putative Permease, YjgP/YjgQ family [Candidatus Nitrospira
defluvii]
Length = 363
Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats.
Identities = 56/366 (15%), Positives = 134/366 (36%), Gaps = 18/366 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL+RY + Y+K G M + VID E + + ++P I
Sbjct: 2 NILFRYMLREYVKIFGMCFAGLMTIYLVIDFFEKVRRFLRY-DAHALDVLAYFVLKMPAI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
QI P L+ ++ L+R+ E+ R+ GIS++ + +PF+ +L + +
Sbjct: 61 SYQIAPLAVLMATLLTIGLLSRSHEITAMRSCGISLYWITSPFLFLGTVLALVLFAFSST 120
Query: 123 IATSGEKIGIDL--IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + K PW+ + + I P +
Sbjct: 121 VIPLALAKAEQIKTTRIEKRAVPVSVKAAQPWVSLG---GQTLMNIDTIDPGGAVLRKIR 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ ++ +A A+ L+ + + + D + + + +
Sbjct: 178 LYRLSPTFELEQIAEAQRAVYSPQGWVLEDGIRRSFRQ---DGTVSVNSFQTEPLPLAQI 234
Query: 241 SEQFASR-----SFYEIIKKMSFSNKSNIFHNY--RAETQFYFLIVIPLMLVAMTLIAAS 293
+ F + + + ++ ++ ++ R T +Y I P + M ++ +
Sbjct: 235 PDDFTTWLELDSETMTLPEIRAYVDRLHLGGTILPRLLTDYYGRIAFPCVTFIMVVVGIA 294
Query: 294 VSLEFS--RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+SL + R + + + + GF ++ ++ + G+ G L P+ A + ++ ++
Sbjct: 295 LSLRRTGVRGSGMAMGIGQAMAVGFFYWSTHSVAIALGRGGALAPMLAGWMANLVFLTFG 354
Query: 352 ILILLQ 357
+LL+
Sbjct: 355 FYLLLK 360
>gi|289678193|ref|ZP_06499083.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae FF5]
Length = 321
Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats.
Identities = 66/329 (20%), Positives = 118/329 (35%), Gaps = 19/329 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L L L + LV + + + + Y+++ P +
Sbjct: 4 LDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISD--TYTLADALSYVMLTAPRRVY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ L +SEL I RA G+SI +++ + ++L I VLV +A
Sbjct: 62 DTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMIAGVLVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + +GD Q + W + + FI + P + T
Sbjct: 122 PYAENQAQAARSLAQGSGDAQSARHGLWHRQGDE----FIHINTVQPNGLML-GVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNSTTLNIPIKMDGF 237
D + ++ A A D +LK V + P+++ L+ P +
Sbjct: 177 DDQRHMLTSSFAKEAHFKTDYWELKDVATTHFNDGSTEVVNTPVERWDVALS-PQLLSTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + ++ SN R F+ ++ P + VA+ L+A S
Sbjct: 236 IMPPESLSISGLWSYAHYLADQGLSNG----RYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
RS V G+ GF I ++
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLG 320
>gi|323144744|ref|ZP_08079321.1| lipopolysaccharide export system permease protein LptG
[Succinatimonas hippei YIT 12066]
gi|322415495|gb|EFY06252.1| lipopolysaccharide export system permease protein LptG
[Succinatimonas hippei YIT 12066]
Length = 355
Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats.
Identities = 74/363 (20%), Positives = 137/363 (37%), Gaps = 17/363 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
GIL RY K T L +L +I + +G + A VP
Sbjct: 3 FGILDRYIGKNVFFTILLVTFCLTLLTTLITFVDQMRYIGR-GSVDFLFLVSHVALEVPG 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ ++ NL RTSEL++ ++IGIS ++ + I L + V +
Sbjct: 62 IVVLFFPVAVLLGGVIALGNLARTSELIVMQSIGISRTGIVLSALKTVIPLILVIVCLGE 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E+ + + NG+ ++ W++ + FIG + + + + +
Sbjct: 122 FVVPRVEQYAENRLNFASSNGNLSVTNDGLWLR----EGHSFIGIRYTMSDGSLLDIVRY 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN------IPIKMD 235
K K R A + + K ++ V + + + + S P +++
Sbjct: 178 EVEGKNLKAFSR--AKSGVYSDGKWVMRDVRKTVFAENKVIRTSLAEEKWSLNLTPERVE 235
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+R + I + +N+ + Y + PL ++ M L+AAS
Sbjct: 236 VVGVKGYNLTARGLIDYINYLEENNQ----DASSYRLELYNKFMSPLTMIVMLLLAASTV 291
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS V GI GF Y I F + P+ A +P ++ + L+I +L
Sbjct: 292 FGPLRSMTMGARVLAGIALGFGFYLANQIGAPFALVYGIPPILGASLPTLVFMLLAIALL 351
Query: 356 LQK 358
+K
Sbjct: 352 RRK 354
>gi|114562104|ref|YP_749617.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
400]
gi|114333397|gb|ABI70779.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
400]
Length = 352
Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats.
Identities = 64/358 (17%), Positives = 128/358 (35%), Gaps = 16/358 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y + + T+ LL L +I + +G Y++ + VP I
Sbjct: 3 ILDLYIARMIVSTSSLCLLILTGLSGIIKWVDQLRLVGR-GAYTMLDAGIYVLFLVPRDI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ ++ L SELV+ + G+S Q+ + +I L I + +
Sbjct: 62 EMFFPMAVLLGALIGMGMLASNSELVVMQVSGMSRLQITQSAMKTAIPLMIMVMALGEWG 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A EK +L G KS W + D+F+ ++ + + + +
Sbjct: 122 APIAEKSAKELQATKISGGSLIKSHRGIWAK----DGDLFVNIGEV-QDVNTLSNISLYE 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN------IPIKMDGF 237
+ + ++ A+ A+ +D +L V + ++ + P K+
Sbjct: 177 FNDQQELTRVTHANTAVFVDDVWQLSVVENTTVKDDRVIRDHLDTDVWQSSLTPDKLSVV 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + + + + + R E + ++ P+ + M L+A S
Sbjct: 237 SVKPEALSISGLIDYLDYLKVNQQ----DPSRYELALWRKVMQPVTVAVMMLVALSFVFG 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R+ V G+ +GF Y I L V A+ P +L L++ +
Sbjct: 293 PLRTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAVVGAIAPSMLFTGLALYYI 350
>gi|290968957|ref|ZP_06560492.1| YjgP/YjgQ family [Megasphaera genomosp. type_1 str. 28L]
gi|290780913|gb|EFD93506.1| YjgP/YjgQ family [Megasphaera genomosp. type_1 str. 28L]
Length = 362
Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats.
Identities = 64/364 (17%), Positives = 140/364 (38%), Gaps = 15/364 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K ++ L+ + + M S + A + +P I+
Sbjct: 3 ILDKYILKEFIGPFLFGVCAFTAVFVGTGTLYRIASMINEYGASAAAAAKVLVLALPSIV 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ F L+ SE+++ RA G +L P +V + + + T +
Sbjct: 63 VLTFPMSVLLGALMAFGRLSAASEIIVMRAGGQHFVRLAMPVLVAAFFISLGTTAFNEFV 122
Query: 124 ATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+I ++ + + + + + + A++ + D T
Sbjct: 123 VPRANNAYNRIINEEIRHHALPVSQEHVIIKNVHGQNIYGLLYARQYDGTEKEFRDITVQ 182
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT--------LNIPIKM 234
++++++ + AD A K + + Y + T + P K+
Sbjct: 183 EF-EQDRLVRVEKADRAKWNGKKWIVHQGSIYDVSSNDNTSRTMTFENQELPFMQRPEKV 241
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
QK E+ R + I+ ++ ++ + + + Y +PL + LI A +
Sbjct: 242 QEAQKKPEELTIRELRQQIRVLT----AHGVDVNKLKVEMYNRFALPLASLVCALIGAPL 297
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L+ R I + + F+ Y+I+T+ + G G + P AAA +P I+ S+ I +
Sbjct: 298 GLQKQR-GSSSIGFGISVVTIFIYYSIMTLADALGNGGTIAPAAAAFLPDIICGSVGIFL 356
Query: 355 LLQK 358
+++K
Sbjct: 357 MIRK 360
>gi|313894646|ref|ZP_07828209.1| permease, YjgP/YjgQ family [Veillonella sp. oral taxon 158 str.
F0412]
gi|313440836|gb|EFR59265.1| permease, YjgP/YjgQ family [Veillonella sp. oral taxon 158 str.
F0412]
Length = 363
Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats.
Identities = 66/357 (18%), Positives = 132/357 (36%), Gaps = 8/357 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L +Y K ++ L+ + + Q + +P I+
Sbjct: 3 LLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMKAFVLALPSIV 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ F L+ TSE+V+ RA G+S +L P + ++++ I V +
Sbjct: 63 ILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALMISIGAVAFNEFV 122
Query: 124 ATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ ++ ++ N Q + I ++ + + AK E T
Sbjct: 123 VPRTNHMYQTIVREEIMKNATPQTQNHIVLKAMNGDELGTLMYAKSYNAETKQLSMITVQ 182
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDGF 237
+ K+ ++AD AI ++ + Y + +L I
Sbjct: 183 QFGEGGKLQQVENADTAIWNGQYWVMQNGIIYDVSAGDGVERTMKFKEQSLPIKSAPKDI 242
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q+ + + E+ ++ + K+ + + E + Y IPL L+ A + L+
Sbjct: 243 QQDQRKPEELTIKELRHQIK-AYKAAYTNANKLEMEMYQRFTIPLASFVFALVGAPLGLQ 301
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS+ + F+ Y ++T + GK G L V AALIP L I + +
Sbjct: 302 KQRSSSSIGFGISILII-FIYYGVMTFAGALGKGGALPTVLAALIPDTLGIIAGLYL 357
>gi|326388615|ref|ZP_08210208.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
gi|326206866|gb|EGD57690.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
Length = 356
Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats.
Identities = 53/358 (14%), Positives = 121/358 (33%), Gaps = 10/358 (2%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + + + LL ++++ ++DL + R P ++ + +
Sbjct: 4 YIARLFAVRIVAVLLMLVLVLQMLDLLSESGHILAAKGNGQMELLRYGMLRTPQLVSRFL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS- 126
P+ L+ I+ LN+ SE++ +A G+S Q+L P + S +FT +
Sbjct: 64 PYSVLLATIITLMTLNQNSEVIAMKAAGLSAHQVLAPLFLVSAAASVFTFTFNERVVVRS 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDFTSITI 184
+ + W+Q + AK I + +
Sbjct: 124 TATLKAWQDVDYGAVPTDSDVKSNVWLQ----DGPNIVFAKTISGRGTATRMSEVSWYRR 179
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK--NSTTLNIPIKMDGFQKFSE 242
D + A LA + + + + ++
Sbjct: 180 DPTGVVTEIVHAPLATYTHPGWRFDHPTSFDVQSAALTTLPGPKVYASGVEPTQIIIRKT 239
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S ++ + ++ ++ + + +++ I PL V M L+ + + +RS
Sbjct: 240 DADRESITQLSQSIAEI-QAAGYRTNELDGKWWHKISGPLSAVLMPLLGSVAAFGLARSG 298
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ + G+ GF + + + G G P AA P +L + + +L++ E+
Sbjct: 299 KLFVRAVIGMALGFAYFVVDNAALAMGNFGGYSPFLAAWSPFLLFLLIGETVLIRTEE 356
>gi|114048398|ref|YP_738948.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-7]
gi|113889840|gb|ABI43891.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-7]
Length = 352
Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats.
Identities = 66/358 (18%), Positives = 127/358 (35%), Gaps = 10/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y + L T+ LL L +I + +G +Y++ + VP
Sbjct: 2 KILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGR-GSYTMMDAGIYVLFLVPRD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I+ P L+ ++ L SELV+ +A G+S Q+ + ++ L + + +
Sbjct: 61 IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A E+ +L G KS W + D+F+ ++ + + T
Sbjct: 121 GAPVAEQKANELQAIKLSGGSLIKSHRGIWAK----DGDLFVNIGEV-ADIDKLNNITLY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQK 239
+ + K+ + A A+ ND L V + + D
Sbjct: 176 KFNSELKLTNVVHAKSALFSNDSWHLMDVKRTDLSYDEVKLEHLDEDIWRSSLTPDKLSV 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + + S ++ + + K+N R E + ++ P+ + M L+A S
Sbjct: 236 VSVKPEALSIRGLMGYLDYL-KNNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGPL 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A+ P +L ++ + +
Sbjct: 295 RTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAIAPSLLFTGIAFYFIRR 352
>gi|56552290|ref|YP_163129.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ZM4]
gi|56543864|gb|AAV90018.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 364
Score = 205 bits (523), Expect = 6e-51, Method: Composition-based stats.
Identities = 58/360 (16%), Positives = 129/360 (35%), Gaps = 16/360 (4%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y K ++ L + ++ +D+ ++ + + R P +I + +
Sbjct: 14 YLSKLFVVRCFAVLAALIFILQTLDMLGESARILAVKGNGQAELFHYVLLRTPQLIARFL 73
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT-S 126
PF L+ ++ LN+ SE++ +A GIS Q+L P + L+G + + + + T +
Sbjct: 74 PFAVLLGVLITLSTLNQNSEIISMKAAGISAHQILMPLIASCFLIGCVSFVFNDHLVTRA 133
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL--PENHIWEDFTSITI 184
K+ + S + W++ D I + +N T
Sbjct: 134 TAKLDAWQAVDYGQPPPAATSGVNIWLR----DGDHLIHVDNVQGYGDNVRLSGITVYNR 189
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-DKNSTTLNIPIKMDGF---QKF 240
+K ++ AD L KV + + +K +N + + F
Sbjct: 190 SQK-TLVSILSADTGQWTGHGWHLNKVKSFDVAADTVTEKPVLDINTDLPPERFTLADVK 248
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+++ Y IK + + + + + M ++ + +R
Sbjct: 249 ADEMEVVPLYRAIKALDAAGR----PTDELKASLIHRFTGAFAAILMPILGSVAGFGLAR 304
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + + + G+ GF + + G G P+ A+ P IL + + +L++ E+
Sbjct: 305 SGRLFVRIVIGMSLGFAYFVADNFALAMGNLGTYPPLLASCSPFILFLLIGEAVLIRTEE 364
>gi|260754017|ref|YP_003226910.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258553380|gb|ACV76326.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 364
Score = 205 bits (523), Expect = 6e-51, Method: Composition-based stats.
Identities = 58/360 (16%), Positives = 130/360 (36%), Gaps = 16/360 (4%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y K ++ L + ++ +D+ ++ + + R P +I + +
Sbjct: 14 YLSKLFVVRCFAVLAALIFILQTLDMLGESARILAVKGNGQAELFHYVLLRTPQLIARFL 73
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT-S 126
PF L+ ++ LN+ SE++ +A GIS Q+L P + L+G + + + + T +
Sbjct: 74 PFAVLLGVLITLSTLNQNSEIISMKAAGISAHQILMPLIASCFLIGCVSFVFNDHLVTRA 133
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL--PENHIWEDFTSITI 184
K+ + S + W++ D I + +N T
Sbjct: 134 TAKLDAWQAVDYGQPPPAATSGVNIWLR----DGDHLIHVDNVQGYGDNVRLSGITVYNR 189
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-DKNSTTLNIPIKMDGF---QKF 240
+K ++ AD L KV + + +K+ +N + + F
Sbjct: 190 SQK-TLVSILSADTGQWTGHGWHLNKVKSFDVAADTVTEKSVLDINTDLPPERFTLADVK 248
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+++ Y IK + + + + + M ++ + +R
Sbjct: 249 ADEMEVVPLYRAIKALDAAGR----PTDELKASLIHRFTGAFAAILMPILGSVAGFGLAR 304
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + + + G+ GF + + G G P+ A+ P IL + + +L++ E+
Sbjct: 305 SGRLFVRIVIGMSLGFAYFVADNFALAMGNLGTYPPLLASCSPFILFLLIGEAVLIRTEE 364
>gi|293390145|ref|ZP_06634479.1| conserved permease [Aggregatibacter actinomycetemcomitans D7S-1]
gi|290950679|gb|EFE00798.1| conserved permease [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 355
Score = 205 bits (523), Expect = 7e-51, Method: Composition-based stats.
Identities = 66/359 (18%), Positives = 137/359 (38%), Gaps = 10/359 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY K L T LL + L +I E +G+ Y I + +P
Sbjct: 2 NTLERYIGKSILGTIFATLLMLVGLSAIIKFVEQFRSVGK-GTYDILQAIAYTVLTMPKD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++ P L+ ++ NL SELV+ ++ G S ++ + ++ L + T+++
Sbjct: 61 VETFFPMAALLGALIALGNLASRSELVVMQSSGFSRMRIGFAVMKTTLPLVLLTMVIGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
E+ D+ + G W + + F+ ++I + D
Sbjct: 121 GIPQTEQFARDMRSKAISGGSMLSVKNGIWAK----DGNNFVYVRRITDDV-ELNDIYIY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQK 239
T +++ ++ K A+ A + K L++ E + I + + D
Sbjct: 176 TFNEQRQLEKLKHANRATFNSGKWTLQQAKESRIQPENIQTTNRLNEEWQTNLTPDKLGV 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + S S + ++F ++ + E ++ + P+ + M ++A S
Sbjct: 236 ASLRPTSLSISGLSNYITFLRETGQ-DSKNFELTYWRKLFQPISVGVMMMLALSFIFGPL 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI GF+ Y + + F P+ AL+P +L + ++ +L ++
Sbjct: 295 RSVTAGARILIGICFGFLFYVVNELFGKFSLVYNTTPLIGALMPSVLFLIITWWLLARR 353
>gi|121534980|ref|ZP_01666798.1| permease YjgP/YjgQ family protein [Thermosinus carboxydivorans
Nor1]
gi|121306393|gb|EAX47317.1| permease YjgP/YjgQ family protein [Thermosinus carboxydivorans
Nor1]
Length = 361
Score = 205 bits (523), Expect = 7e-51, Method: Composition-based stats.
Identities = 61/360 (16%), Positives = 138/360 (38%), Gaps = 14/360 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K L ++ + + + S+ L +P II
Sbjct: 3 ILDKYILKEMLGPFIFGIAAFSSVFIGTSTLFRLARYITEYGASVYSVTKLFIYSLPGII 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ +++ F L+ +SE+ ++ G+S ++L P + + ++ I V++ +
Sbjct: 63 VLTFPMSMLLASLLAFGRLSASSEITAMKSGGLSFFRLAAPVFIAAFVVSIVAVILNEAV 122
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++++ + + + I + + + + A+K + T
Sbjct: 123 VPRANNAYQNVLRYEIEKSRPKTQEHIVIKDVKDGEIERLTYARKFDEAANAMYAVTVQE 182
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL--------NIPIKMD 235
DK +++ ++A+ AI N + ++ + Y + + P ++
Sbjct: 183 FDK-GRLVRVENAEKAIWDNGRWIMESGIIYDVAPEGQLQRTLRFDKQFMPVEKSPREIA 241
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
QK E+ + + IK + + E + + + IP + LI +
Sbjct: 242 REQKKPEEMTIKELKQHIKVL----QREYVKTSTYEVELHQRLAIPAASLVFALIGTPLG 297
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L+ RS+ + I + YTI+T+ + G+ G + V AA IP I+ I + ++
Sbjct: 298 LQPHRSSSSIGLGISIIIIF-IYYTIMTVFTALGQGGAIPAVLAAWIPNIVFIIIGAFLI 356
>gi|309390182|gb|ADO78062.1| permease YjgP/YjgQ family protein [Halanaerobium praevalens DSM
2228]
Length = 366
Score = 205 bits (523), Expect = 7e-51, Method: Composition-based stats.
Identities = 60/366 (16%), Positives = 131/366 (35%), Gaps = 16/366 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L +Y +K + + + + DL + + L ++P I
Sbjct: 2 KTLNKYIYKELIAPFFFGVAAFTGIFIGTDLIFELTEFYTKWGVEVFTLIKLFFLKLPEI 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I P +L+ I+ + L+ SE+ RA G+SI L+ P ++ +L T+ +
Sbjct: 62 IVLTFPMASLLGTIMAYNRLSGDSEITAMRAGGVSILALVMPALILGLLTSGVTIGISEF 121
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ---DIFIGAKKILPENHIWEDF 179
+ + ++ Q + + ++ ++ + + D + A ++ I +D
Sbjct: 122 LVPNANYQAEQIMYQAQHGEQRPETQYDLFLTPMDSRTRRPDYMLYAHSFNGDSGIMKDV 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR--------IPIDKNSTTLNIP 231
+ + K +A+ A +D + Y R ++ ++ P
Sbjct: 182 VVQSF-EDGKPDSVLEAESAEWLSDGWHFYDGIIYFLDRENRQPALEFSTYRSREEIHSP 240
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ K ++ R E I + Y +F+ IPL L+A
Sbjct: 241 TQAGKLGKDIDEMNIRELNEHIALKEEQGRQ----AYAERVEFHHRFSIPLASFIFALLA 296
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
A + ++ RS I F+ Y ++T+ + G G + P A + I+ +
Sbjct: 297 APLGIKPQRSAGSATGFGISIIVIFIYYVLMTVGDALGSQGTIEPWLGAWLQNIVIFVVG 356
Query: 352 ILILLQ 357
+ +L +
Sbjct: 357 LALLFK 362
>gi|160872818|ref|ZP_02062950.1| permease [Rickettsiella grylli]
gi|159121617|gb|EDP46955.1| permease [Rickettsiella grylli]
Length = 355
Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 128/360 (35%), Gaps = 17/360 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY + + TTL L +IL +I L +G +Y+++ +P
Sbjct: 2 NIIDRYLGRTIIHTTLSVLGILLILFALIQLISETRDIGT-GHYTLTSAFSYVLLTLPSQ 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P L+ +I+ L++ SEL+I A G+S++Q+ + ++ + TVL+
Sbjct: 61 FYNFFPIAILLGSILGLNVLSKHSELMILHANGVSLYQMAWSLIKATLWMVFITVLIGEG 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A ++ G W++ FI + IL H
Sbjct: 121 LAPHAARLAESHKFFLTTKGQTLTTQQGSVWIR----DGHNFIYIQSILDPTH-LNHVNC 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI------PIKMD 235
D N ++ A + + K I P +
Sbjct: 176 YQFDDDNNLLKASFAKQVNYKAKAWHAYDIATSLITLNKVKKKFIAHEIWPFSFSPKLLT 235
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
E+ + R +E I K N + F+ IV P+ L M +A S
Sbjct: 236 ISIIKPEEMSLRQLHEYIHY----RKKNHLNTSPYSFAFWKRIVEPISLWVMMCLAIPFS 291
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ R+ + GI GF Y + + F P AAL+P+ + + ++IL++
Sbjct: 292 FKHLRTLATSLKTLAGITIGFSFYLLNNFLGPFAIVYQWPPFLAALLPLFIFMLIAILLM 351
>gi|294795168|ref|ZP_06760302.1| putative membrane protein, YjgP/YjgQ family [Veillonella sp.
3_1_44]
gi|294453960|gb|EFG22335.1| putative membrane protein, YjgP/YjgQ family [Veillonella sp.
3_1_44]
Length = 363
Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats.
Identities = 69/359 (19%), Positives = 136/359 (37%), Gaps = 12/359 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAA--TRVPL 61
+L +Y K ++ L+ + + I + + Y V+ A +P
Sbjct: 3 LLDKYILKAFVGPFLFGVFAFTSI--FIGTGTLFRIAQYITEYGAPLVLVMKAFVLALPS 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L+ +++ F L+ TSE+V+ RA G+S +L P + ++++ I V
Sbjct: 61 IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNE 120
Query: 122 PIATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + ++ +Q N Q + I ++ + AK E T
Sbjct: 121 FVVPRTNNMYQTIVREQIMKNASPQTQNHIVLKTMNGNDLGTLMYAKSYNAETKKLSMIT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMD 235
+ K+ ++AD A+ ++ + Y + +L I
Sbjct: 181 VQQFGEGGKLQQVENADTAVWNGQYWVMQNGIIYDISAGDGVERTMKFKEQSLPIKSAPK 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + + E+ ++ + K+ + + E + Y IPL L+ A +
Sbjct: 241 DIQQDQRKPEELTIKELRHQIK-AYKAAYTNANKLEMEMYQRFTIPLASFVFALVGAPLG 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L+ RS+ + F+ Y ++T + GK G L V AALIP L I + +
Sbjct: 300 LQKQRSSSSISFGISILII-FIYYGVMTFAGALGKGGALPTVFAALIPDTLGIIAGLYL 357
>gi|149190545|ref|ZP_01868815.1| predicted permease [Vibrio shilonii AK1]
gi|148835669|gb|EDL52636.1| predicted permease [Vibrio shilonii AK1]
Length = 356
Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats.
Identities = 67/366 (18%), Positives = 135/366 (36%), Gaps = 19/366 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y K + T + L + L VI E +GE +Y++ +P
Sbjct: 1 MFRILDVYVGKTIITTIILVLSVFVGLSAVIKFVEQLRSVGE-GSYTMLSALYFVILGMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ L+ ++V L +SELV+ +A GIS ++ + ++ L + + +
Sbjct: 60 RDIELFFSMAALLGSLVGLGMLASSSELVVMQAAGISKLRIGLSVLKTAVPLMVVVMALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A + +++ DL Q G W + +N FI K+ E
Sbjct: 120 EWGAPTTQQMARDLRLQATSGGSIVSVRNGVWARDAND----FIFISKVN--GESVEGLN 173
Query: 181 SITIDKKNKIIHRKDADLA-IIYNDKVKLKKVVEYQYGRIPIDKNST-------TLNIPI 232
+ ++ A+ A + +++ ++ ++ T T +P
Sbjct: 174 IWRFGENKQLKETVFAESADYLGDNRWEMHRIQITDMKNDEALSKETLDKQVWETSLVPD 233
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + ++ + + S + R E F+ P+ + M L+A
Sbjct: 234 KLAIVTVDLNELPLSGLWDYTQYLKDSEQ----DASRYELAFWRKATQPISVAVMMLMAL 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + G+ +GF Y + P+ AL P ++ +++++
Sbjct: 290 SFVFGPLRSVTMGARILSGVIAGFTFYISSEFFGPVSLVYGMSPLFGALGPSLVFLTIAM 349
Query: 353 LILLQK 358
L+L +K
Sbjct: 350 LLLRRK 355
>gi|126031979|gb|ABN71555.1| putative permease [uncultured bacterium]
Length = 365
Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats.
Identities = 61/360 (16%), Positives = 140/360 (38%), Gaps = 7/360 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY K ++ + LL ++++ ++DL ++ P S ++ + R+P ++
Sbjct: 10 TLTRYIAKLFVVRVVGVLLMLVLVLQMLDLLSESGKILSQPGNSEAQLWTYVSLRLPQLV 69
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P+ L+ I+ LN+ SE+V +A G+S Q+L P ++ ++ + ++ +
Sbjct: 70 ARFLPYSALLATIITLATLNQNSEVVAMKAAGLSAHQVLAPLLLTALGVSATSLAFNELV 129
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDFTS 181
T + Q + S + + + A + E T
Sbjct: 130 VTRSSA-ALKAWQAVDYGVVPRGSAGRT--NVYTRDGNDILTAASVSGEGSAMRLVGVTF 186
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKF 240
D I + + A +L++ V + + + +
Sbjct: 187 YRRDVNGAIREKIVSPRANFAQPGWRLEQPVAFDVASVQQKPIAPLVVARAVTPVQVSIS 246
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ ++ ++ + ++ + K+N E +++ + PL M L+ A + +R
Sbjct: 247 TIDADGQNIVQLGRSIA-ALKANGRRTSELEGKWWHKLSGPLSAALMPLLGAIAAFGLAR 305
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S Q I G+ GF + + + G G P+ AA P +L + + +L++ E+
Sbjct: 306 SGQLLIRAVLGMALGFTYFVVDNAALAMGNFGGYPPLIAAWAPFLLFLLIGETVLVKTEE 365
>gi|127511874|ref|YP_001093071.1| permease YjgP/YjgQ family protein [Shewanella loihica PV-4]
gi|126637169|gb|ABO22812.1| permease YjgP/YjgQ family protein [Shewanella loihica PV-4]
Length = 352
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 68/360 (18%), Positives = 135/360 (37%), Gaps = 16/360 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y + L T+ LL L +I + +G Y++ + +P I
Sbjct: 3 ILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQIRLVGR-GTYTMVDAGIYVLFLIPRDI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ ++ L SELV+ ++ G+S +Q+ + ++ L + + +
Sbjct: 62 EMFFPMAVLLGALIGMGMLASNSELVVMQSAGLSRFQITLSAMKTAVPLMLLVMALGEWG 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E+ G +L G KS W + D+F+ +I + + +
Sbjct: 122 APVAERHGKELQAVKLSGGSLFKSSRGIWAK----DGDLFVNIGEI-EDINSLHNIVLYE 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL------NIPIKMDGF 237
D K ++ +A + D +L V + + + TL P K+
Sbjct: 177 FDDKLNLVGTIEARRGVYSKDHWRLLDVRQTKITPEQVSLTDLTLYRWESTLTPDKLSVV 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + + ++ + +N+ + R E + I+ P+ + M L+A S
Sbjct: 237 SVKPEALSIQGLVDYLEYLRVNNQ----DSGRYELALWRKIMQPITVAVMMLVALSFVFG 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L V A++P ++ S +I + +
Sbjct: 293 PLRTVTMGARVLLGVVAGFSFYICNEIFGPMTLVYGLPAVLGAVMPPLIFSSAAIYYIRR 352
>gi|66044344|ref|YP_234185.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae B728a]
gi|63255051|gb|AAY36147.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae B728a]
gi|330969233|gb|EGH69299.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 353
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 66/329 (20%), Positives = 117/329 (35%), Gaps = 19/329 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L L L + LV + + + + Y+++ P +
Sbjct: 4 LDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISD--TYTLADALSYVMLTAPRRVY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ L +SEL I RA G+SI +++ + ++L I VLV +A
Sbjct: 62 DTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMIAGVLVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + +GD Q + W + + FI + P + T
Sbjct: 122 PYAENQAQAARSLAQGSGDAQSARHGLWHRQGDE----FIHINTVQPNGLML-GVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNSTTLNIPIKMDGF 237
D + + A A D +LK V + P+++ L+ P +
Sbjct: 177 DDQRHMQTSSFAKEANFKTDYWELKDVTTTHFNDGRTEVINTPVERWDVALS-PQLLSTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + ++ SN R F+ ++ P + VA+ L+A S
Sbjct: 236 IMPPESLSISGLWSYAHYLADQGLSNG----RYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
RS V G+ GF I ++
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLG 320
>gi|251792101|ref|YP_003006821.1| permease [Aggregatibacter aphrophilus NJ8700]
gi|247533488|gb|ACS96734.1| conserved permease [Aggregatibacter aphrophilus NJ8700]
Length = 355
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 69/359 (19%), Positives = 139/359 (38%), Gaps = 10/359 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY K L T LL + L +I E +G+ Y I + +P
Sbjct: 2 NTLERYIGKSILGTIFATLLMLVGLSAIIKFVEQFRSVGK-GTYDIWQAIAYTVLTMPKD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++ P L+ ++ NL SELV+ ++ G S ++ + +I L + T+++
Sbjct: 61 VETFFPMAALLGALIALGNLASRSELVVMQSSGFSRMRIGLAVMKTTIPLVLLTMIIGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
E+ D+ + G W + + F+ + I + D
Sbjct: 121 GIPQTEQFARDMRSKAISGGSMLSVKNGIWAK----DGNNFVYVRNISDDV-ELRDIYIY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQK 239
T +++ ++ K A+ A + K LK+V E +++ + + D
Sbjct: 176 TFNEQRRLEKLKHANHAAFNDGKWMLKQVNESTIQPDSVNTVNRLNEEWQTNLTPDKLGV 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + S S + ++F ++ + E ++ + P+ + M ++A S
Sbjct: 236 ASLRPTSLSISGLSSYITFLKETGQ-DSKNFELTYWRKLFQPISVGVMMMLALSFIFGPL 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI GF+ Y + + F P+ AL+P +L ++++ +L +K
Sbjct: 295 RSVTAGARILIGICFGFLFYVVNELFGKFSLVYNTTPLIGALMPSMLFLAITWWLLARK 353
>gi|163750107|ref|ZP_02157350.1| hypothetical protein KT99_20606 [Shewanella benthica KT99]
gi|161330164|gb|EDQ01146.1| hypothetical protein KT99_20606 [Shewanella benthica KT99]
Length = 352
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 66/359 (18%), Positives = 135/359 (37%), Gaps = 16/359 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y + + ++ LL L +I + +G NY++ + +P
Sbjct: 2 KILDLYIARTLVSSSALCLLILTGLSGIIKWVDQLRVVGR-GNYTMLDAGIYVLFLIPRD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I+ P L+ ++ L SELV+ ++ G+S +Q+ + ++ L + +++
Sbjct: 61 IEIFFPMAVLLGALIGMGMLASGSELVVMQSAGLSRFQITLSAMKTAVPLMLMIMVLGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A + E+ +L G KS W + D+F+ ++ + + T
Sbjct: 121 GAPAAERRANELQAFKVSGGSLIKSSRGIWAK----DGDLFVNIGEV-ENINSLRNITLY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL------NIPIKMDG 236
D ++ A+ + ND +L V + + + TL P K+
Sbjct: 176 EFDSTLTLVKTIHAERGVYSNDHWRLLDVRQIDLTKDKVTLTDLTLYRWDSTLTPDKLSV 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E + + + + +N+++ R E + I+ P+ + M L+A S
Sbjct: 236 VSVKPESLSIQGLLGYLDYLEANNQNSG----RYELALWRKIMQPVTVAVMMLVALSFVF 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS V G+ +GF Y I L A++P ++ S++I +
Sbjct: 292 GPLRSVTMGARVLLGVIAGFTFYISSEIFGPLTLVYGLPAFLGAVMPALIFSSVAIYFI 350
>gi|294139611|ref|YP_003555589.1| hypothetical protein SVI_0840 [Shewanella violacea DSS12]
gi|293326080|dbj|BAJ00811.1| conserved hypothetical protein [Shewanella violacea DSS12]
Length = 352
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 63/359 (17%), Positives = 133/359 (37%), Gaps = 16/359 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y + + + LL L +I + +G +Y++ + +P
Sbjct: 2 KILDLYIARTLVSASALCLLILTGLSGIIKWVDQLRVVGR-GSYTMLDAGIYVLFLIPRD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I+ P L+ ++ L SELV+ ++ G+S +Q+ + ++ L + +++
Sbjct: 61 IEMFFPMAVLLGALIGMGTLASGSELVVMQSAGLSRFQITLSAMKTAVPLMLMIMVLGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A + E+ +L G KS W + D+F+ ++ + + T
Sbjct: 121 GAPAAERRANELQAFKVSGGSLIKSSRGIWAK----DGDLFVNIGEV-ENINRLHNITLY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL------NIPIKMDG 236
D ++ A+ + ND +L V + + + TL P K+
Sbjct: 176 EFDSTLTLVKTIHAERGVYSNDHWRLIDVRQTDLTKDKVTLTDLTLYRWDSTLTPDKLSV 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E + + + + +N+ + R E + I+ P+ + M L+A S
Sbjct: 236 VSVKPESLSIQGLMGYLDYLKVNNQ----DSGRYELALWRKIMQPVTVAVMMLVALSFVF 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R+ V G+ +GF Y I L A++P ++ +++I +
Sbjct: 292 GPLRTVTMGARVLLGVIAGFTFYISSEIFGPLTLVYGLPAFLGAVMPALIFSTIAIYFI 350
>gi|117921443|ref|YP_870635.1| permease YjgP/YjgQ family protein [Shewanella sp. ANA-3]
gi|117613775|gb|ABK49229.1| permease YjgP/YjgQ family protein [Shewanella sp. ANA-3]
Length = 352
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 65/358 (18%), Positives = 126/358 (35%), Gaps = 10/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y + L T+ LL L +I + +G +Y++ + VP
Sbjct: 2 KILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGR-GSYTMMDAGIYVLFLVPRD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I+ P L+ ++ L SELV+ +A G+S Q+ + ++ L + + +
Sbjct: 61 IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A E+ +L G KS W + D+F+ ++ + + T
Sbjct: 121 GAPVAEQKANELQAIKLSGGSLIKSHRGIWAK----DGDLFVNIGEV-ADIDKLNNITLY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQK 239
+ + K+ + A A+ D L V + + D
Sbjct: 176 KFNSELKLTNVVHAKSALFSKDSWHLMDVKRTDLSYDEVKLEHLDEDIWRSSLTPDKLSV 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + + S ++ + + K+N R E + ++ P+ + M L+A S
Sbjct: 236 VSVKPEALSIRGLMGYLDYL-KNNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGPL 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A+ P +L ++ + +
Sbjct: 295 RTVTMGARVLLGVVAGFSFYISNEIFGPMSMVYELPAYVGAIAPSLLFTGIAFYFIRR 352
>gi|113971160|ref|YP_734953.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-4]
gi|113885844|gb|ABI39896.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-4]
Length = 352
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 66/358 (18%), Positives = 126/358 (35%), Gaps = 10/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y + L T+ LL L +I + +G +YS+ + VP
Sbjct: 2 KILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGR-GSYSMMDAGIYVLFLVPRD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I+ P L+ ++ L SELV+ +A G+S Q+ + ++ L + + +
Sbjct: 61 IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A E+ +L G KS W + D+F+ ++ + + T
Sbjct: 121 GAPVAEQKANELQAIKLSGGSLIKSHRGIWAK----DGDLFVNIGEV-ADIDKLNNITLY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQK 239
+ + K+ + A A+ D L V + + D
Sbjct: 176 KFNSELKLTNVVHAKSALFSKDSWHLMDVKRTDLSYEEVKLEHLDEDIWRSSLTPDKLSV 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + + S ++ + + K+N R E + ++ P+ + M L+A S
Sbjct: 236 VSVKPEALSIRGLMGYLDYL-KNNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGPL 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A+ P +L ++ + +
Sbjct: 295 RTVTMGARVLLGVVAGFSFYISNEIFGPMSMVYELPAYVGAIAPSLLFTGIAFYFIRR 352
>gi|300725025|ref|YP_003714351.1| putative transmembrane protein, transport [Xenorhabdus nematophila
ATCC 19061]
gi|297631568|emb|CBJ92277.1| putative transmembrane protein, transport [Xenorhabdus nematophila
ATCC 19061]
Length = 359
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 78/367 (21%), Positives = 142/367 (38%), Gaps = 19/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L+T L L + L +I + ++G+ Y+ + VP
Sbjct: 1 MFGVLDRYIGRTILQTILMTLFMLVSLSGIIKFVDQLRKVGQ-GEYTALSAGIYTLLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IQ P L+ ++ L SELV+ +A G + Q+ + +I L + T+++
Sbjct: 60 KDIQIFFPMAALLGALLGLGALATRSELVVMQASGFTRLQVAGSVMKTAIPLVLLTMVIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A GE++ + Q G + W + F+ + + +N +
Sbjct: 120 EWVAPQGEQLARNYRSQKMFGGSLMSTTKGLWAK----DGRDFVYIQSVGKDNA-LNGVS 174
Query: 181 SITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQY-------GRIPIDKNSTTLNIP 231
+D+ K++ K A A+ N + KL +V E G + + P
Sbjct: 175 IYHVDENRKLLSVKYAASAVYDKDNQQWKLSQVEESDLTKFGRIIGSQRVSAEWNSQLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + + R ++ I + + R + + + PL + M L+A
Sbjct: 235 EKLGVVSLDPDALSIRGLHQYITYLKLGQQ----DAGRYQLNMWKKVFAPLSVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S R V GI GF+ Y + I + P+ AL+P +L LS
Sbjct: 291 LSFIFGPLRCVPMGFRVVVGISMGFLFYVLNEIFGPLSLVYSMPPLLGALLPSLLFFGLS 350
Query: 352 ILILLQK 358
+ +LL K
Sbjct: 351 VYLLLHK 357
>gi|261867782|ref|YP_003255704.1| permease [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413114|gb|ACX82485.1| conserved permease [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 355
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 67/359 (18%), Positives = 138/359 (38%), Gaps = 10/359 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY K L T LL + L +I E +G+ Y I + +P
Sbjct: 2 NTLERYIGKSILGTIFATLLMLVGLSAIIKFVEQFRSVGK-GTYDILQAIAYTVLTMPKD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++ P L+ ++ NL SELV+ ++ G S ++ + ++ L + T+++
Sbjct: 61 VETFFPMAALLGALIALGNLASRSELVVMQSSGFSRMRIGFAVMKTTLPLVLLTMVIGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
E+ D+ + G W + + F+ ++I + D
Sbjct: 121 GIPQTEQFARDMRSKAISGGSMLSVKNGIWAK----DGNNFVYVRRITDDV-ELNDIYIY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQK 239
T +++ ++ K A+ A + K L++V E + I + + D
Sbjct: 176 TFNEQRQLEKLKHANRATFNSGKWTLQQVNESRIQPENIQTTNRLNEEWQTNLTPDKLGV 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + S S + ++F ++ + E ++ + P+ + M ++A S
Sbjct: 236 ASLRPTSLSISGLSNYITFLRETGQ-DSKNFELTYWRKLFQPISVGVMMMLALSFIFGPL 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI GF+ Y + + F P+ AL+P +L + ++ +L ++
Sbjct: 295 RSVTAGARILIGICFGFLFYVVNELFGKFSLVYNTTPLIGALMPSVLFLIITWWLLARR 353
>gi|330950945|gb|EGH51205.1| permease YjgP/YjgQ [Pseudomonas syringae Cit 7]
Length = 353
Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 67/329 (20%), Positives = 118/329 (35%), Gaps = 19/329 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L L L + LV + + + + Y+++ P +
Sbjct: 4 LDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISD--TYTLADALSYVMLTAPRRVY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ L +SEL I RA G+SI +++ + +LL I VLV +A
Sbjct: 62 DTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMIAGVLVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + +GD Q + W + + FI + P + T
Sbjct: 122 PYAENQAQAARSLAQGSGDAQSARHGLWHRQGDE----FIHINTVQPNGLML-GVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNSTTLNIPIKMDGF 237
D + ++ A A D +LK V + P+++ L+ P +
Sbjct: 177 DDQRHMLTSSFAKEANFKTDYWELKDVTTTHFNDGSTKVINTPVERWDVALS-PQLLSTL 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + ++ SN R F+ ++ P + VA+ L+A S
Sbjct: 236 IMPPESLSISGLWSYAHYLADQGLSNG----RYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
RS V G+ GF I ++
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLG 320
>gi|325578599|ref|ZP_08148699.1| YjgP/YjgQ family membrane protein [Haemophilus parainfluenzae ATCC
33392]
gi|301156461|emb|CBW15932.1| conserved inner membrane protein [Haemophilus parainfluenzae T3T1]
gi|325159835|gb|EGC71965.1| YjgP/YjgQ family membrane protein [Haemophilus parainfluenzae ATCC
33392]
Length = 359
Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 73/368 (19%), Positives = 141/368 (38%), Gaps = 18/368 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ L RY K L L + L +I E +G+ +Y I + +P
Sbjct: 2 LMNTLDRYIGKSILGAIFATLFTLVGLSAIIKFVEQFRSVGK-GSYDIWQAVAYTGLTIP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ NL SELV+ ++ G S +++ + ++ L +FT+++
Sbjct: 61 KDVETFFPMAALLGALIALGNLASRSELVVMQSAGFSRFKIGLAVMKTALPLVLFTMIIG 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + + F+ ++I + ED
Sbjct: 121 EWGIPQTEQFARDMRTRALSGGSMLSVKNGVWAK----DGNNFVYVRRITDDAQ-LEDIY 175
Query: 181 SITIDKKNKIIHRKDADLAII--YNDKVKLKKV------VEYQYGRIPIDKNSTTLNIPI 232
T D++ + H K A+ A N++ +L++V E + ++ T P
Sbjct: 176 IYTFDEQRNLTHLKHANQAQYSAENNQWQLRQVNNSAVSKEQITTTNRLTEDWATSLTPD 235
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + YE I + + + + R E ++ I PL + M ++A
Sbjct: 236 KLGAVSLRPTSLSISGLYEYIAFLKQTGQ----DSRRFELTYWRKIFQPLSVGVMMMLAL 291
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + GI GF+ Y + I AL+P +L +++
Sbjct: 292 SFIFGSLRSVTAGARIVTGICFGFLFYVVNEIFGQMSVVFNAPAFLGALMPSLLFMAIIW 351
Query: 353 LILLQKED 360
+L +K D
Sbjct: 352 WLLARKRD 359
>gi|241761652|ref|ZP_04759739.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|241373960|gb|EER63493.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 364
Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 58/360 (16%), Positives = 129/360 (35%), Gaps = 16/360 (4%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y K ++ L + ++ +D+ ++ + + R P +I + +
Sbjct: 14 YLSKLFVVRCFAVLAALIFILQTLDMLGESARILAVKGNGQAELFHYVLLRTPQLIARFL 73
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT-S 126
PF L+ ++ LN+ SE++ +A GIS Q+L P + L+G + + + + T +
Sbjct: 74 PFAVLLGVLITLSTLNQNSEIISMKAAGISAHQILMPLIASCFLIGCVSFVFNDRLVTRA 133
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL--PENHIWEDFTSITI 184
K+ + S + W++ D I + +N T
Sbjct: 134 TAKLDAWQAVDYGQPPPAATSGVNIWLR----DGDHLIHVDNVQGYGDNVRLSGITVYNR 189
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-DKNSTTLNIPIKMDGF---QKF 240
+K ++ AD L KV + + +K +N + + F
Sbjct: 190 SQK-TLVSILSADTGQWTGHGWHLNKVKSFDVAADTVTEKPVLDINTDLPPERFTLADVK 248
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+++ Y IK + + + + + M ++ + +R
Sbjct: 249 ADEMEVVPLYRAIKALDAAGR----PTDELKASLIHRFTGAFAAILMPILGSVAGFGLAR 304
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S + + + G+ GF + + G G P+ A+ P IL + + +L++ E+
Sbjct: 305 SGRLFVRIVIGMSLGFAYFVADNFALTMGNLGTYPPLLASCSPFILFLLIGEAVLIRTEE 364
>gi|330504704|ref|YP_004381573.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina NK-01]
gi|328918990|gb|AEB59821.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina NK-01]
Length = 354
Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 121/359 (33%), Gaps = 16/359 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L L + L + + + +Y + + P
Sbjct: 4 LDRYIGTQVFFAILAVLGIILGLALLFAFIDELGDL-NKGDYGLGQALWYVLLTAPRRAY 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ ++ L SEL I RA G+SI +++ + ++L + +L+ +A
Sbjct: 63 EMLPMAALIGCLIGLGTLASNSELTIMRAAGVSIGRIVWAVMKPMLVLMLAGILIGEYVA 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + G Q S W + ++ + P + T
Sbjct: 123 PLTENQAQADRALAQGGGAAQSSKRGMWHRQ----GQEYVHINAVQPGG-VLLGVTRYRF 177
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEY-----QYGRIPIDKNSTTLNI-PIKMDGFQ 238
D + +++ A A ++ L V + + + + P +
Sbjct: 178 DDERRLLSASFARRAEYRDNHWMLSNVKTTLLHEDHSEVVNQREERWDIELNPELLGTVV 237
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
E + ++ I +S +N R F+ ++ PL+ A+ L+A S
Sbjct: 238 MEPEALSVTGLWQYIHYLSEQG----LNNARYWLAFWTKVLQPLVTGALVLMAISFIFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF+ ++ P+ A L+P + + +L +
Sbjct: 294 LRSVTLGQRVFTGVLVGFIFRIAQDLLGPSSLVFGFSPLLAVLVPAGICALAGVWLLRR 352
>gi|332187143|ref|ZP_08388883.1| hypothetical protein SUS17_2304 [Sphingomonas sp. S17]
gi|332012843|gb|EGI54908.1| hypothetical protein SUS17_2304 [Sphingomonas sp. S17]
Length = 366
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 60/355 (16%), Positives = 124/355 (34%), Gaps = 5/355 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y K +L T L +I++ +D+ + P ++ + R P II I+
Sbjct: 15 YMAKMFLLRTFAILFALVIVLQALDILSESGAILATPGNGEAQVWRYVSLRAPQIIAFIL 74
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT-S 126
PF L+ I+ FF +N+ SE++ +A G+S Q+L P +V S + + + + I +
Sbjct: 75 PFSVLLGTILTFFTMNQNSEVIALKAAGLSAHQVLAPLLVASAGVAVLSFAFNDRIVPRA 134
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ + W++ + I + + N T
Sbjct: 135 TATLSAWQKVDYGPIPIDSGDRSNVWVRDGDDL--ISVDLVQGRGANTQLGGVTLYDRKG 192
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFSEQFA 245
+ A D ++ ++ + S + + + S
Sbjct: 193 GGSLQAIVRAPRGRRMGDGWQIGPATRFEVASGKLTSIPSMIIGRGVTPEQLTLASVNAD 252
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
SF + + ++ E + + P+ + M L+ A + +RS +
Sbjct: 253 GLSFKGLSNAIDDLREAG-RPTKTLEGSLWHKLSAPMSAILMPLLGAVAAFGIARSGKLF 311
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ G+ GF + + G G P AA P++L + +L + E+
Sbjct: 312 VRAVIGMALGFAFFVADNFSMAMGDLGAYPPFLAAWAPILLFFLIGEAVLFRTEE 366
>gi|152978628|ref|YP_001344257.1| permease YjgP/YjgQ family protein [Actinobacillus succinogenes
130Z]
gi|150840351|gb|ABR74322.1| permease YjgP/YjgQ family protein [Actinobacillus succinogenes
130Z]
Length = 354
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 68/361 (18%), Positives = 136/361 (37%), Gaps = 11/361 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY K L T LL + L +I E +G+ Y + + +P
Sbjct: 2 NTLERYIGKSILGTIFATLLTLVGLSAIIKFVEQFRSVGK-GTYDSLQAVLYTILTIPKD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++ P L+ ++ NL SEL++ ++ G S ++ + +I L + T+++
Sbjct: 61 VETFFPMAALLGALIALGNLASRSELIVMQSAGFSRLKIGIAVMKTAIPLVLITMVIGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
E+ D+ + G W + N FI +++ + + D
Sbjct: 121 GIPQTEQYARDMRAKAISGGSLMSVKNSVWAKDGND----FIFVRQVREDAN-LRDVYIY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQK 239
D ++ A+ A K +L ++ I + + D
Sbjct: 176 HFD-NRQLQRLSHANSATYERGKWQLHQLNVSDIQAEQIFTKNYVSQEWKTSLTPDKLGI 234
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + S S + + ++F +++ + + E ++ + P+ + M ++A S
Sbjct: 235 VSLRPTSLSISGLSEYIAFLHQTGQ-DSKKFELTYWRKLFQPISVGVMMMLALSFIFGPL 293
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
RS + GI GF+ Y I I + P+ AL+P IL + ++ +L +K
Sbjct: 294 RSVTAGARIVTGICFGFLFYVINEIFGPLSLVYNVTPIVGALMPSILFLVITWWLLSRKR 353
Query: 360 D 360
D
Sbjct: 354 D 354
>gi|126175308|ref|YP_001051457.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
gi|153001630|ref|YP_001367311.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
gi|217972441|ref|YP_002357192.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
gi|125998513|gb|ABN62588.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
gi|151366248|gb|ABS09248.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
gi|217497576|gb|ACK45769.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
Length = 352
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 129/358 (36%), Gaps = 10/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y + L T+ LL L +I + +G YS+ + VP
Sbjct: 2 KILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGR-GTYSMMDAGIYVLFLVPRD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I+ P L+ ++ L SELV+ +A G+S Q+ + ++ L + +++
Sbjct: 61 IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITMSAMKTAVPLMLLVMVLGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A E+ +L G KS W + D+F+ ++ + + T
Sbjct: 121 GAPIAEQKANELQAIKLSGGSLIKSHRGIWAK----DGDLFVNIGEV-ENINKLNNITLY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQK 239
+ + K+ + AD A+ D+ +L V + + D
Sbjct: 176 KFNSELKLTNVVHADRAVFSQDRWRLFDVKRTDLSYEKVVLEYLEEDQWQSSLTPDKLSV 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + + S ++ + + K+N R E + ++ P+ + M L+A S
Sbjct: 236 VSIKPEALSIRGLVGYLDYL-KTNSQDPSRYELALWRKVMQPVTVAVMMLVALSFVFGPL 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A+ P +L ++ + +
Sbjct: 295 RTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAVAPSLLFTGVAFYFIRR 352
>gi|302188385|ref|ZP_07265058.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae 642]
Length = 353
Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 66/329 (20%), Positives = 119/329 (36%), Gaps = 19/329 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L L L + LV + + + + Y+++ P +
Sbjct: 4 LDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISD--TYTLADALSYVMLTAPRRVY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ L +SEL I RA G+SI +++ + ++L I VLV +A
Sbjct: 62 DTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMIAGVLVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + +GD Q + W + + FI + P + T
Sbjct: 122 PYAENQAQAARSLAQGSGDAQSARHGLWHRQGDE----FIHINTVQPNGLML-GVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNSTTLNIPIKMDGF 237
D++ ++ A A D +LK V + P+++ L+ P +
Sbjct: 177 DEQRHMLTSSFAKEANFKTDYWELKDVATTHFNDGSTEVVNTPVERWDVALS-PQLLSTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + ++ SN R F+ ++ P + VA+ L+A S
Sbjct: 236 IMPPESLSISGLWSYAHYLADQGLSNG----RYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
RS V G+ GF I ++
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLG 320
>gi|300114326|ref|YP_003760901.1| permease YjgP/YjgQ family protein [Nitrosococcus watsonii C-113]
gi|299540263|gb|ADJ28580.1| permease YjgP/YjgQ family protein [Nitrosococcus watsonii C-113]
Length = 354
Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats.
Identities = 69/361 (19%), Positives = 126/361 (34%), Gaps = 16/361 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K + TL L + L + +GE NY + +P
Sbjct: 2 KILDRYIAKAVISYTLLVLFILIALYTFLQFITELEDVGE-GNYGVMGALRYTTYSIPQH 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I ++P L+ +++ L SELV RA G S+ ++ + ++ I TVL+
Sbjct: 61 IYDLLPVAALLGSVLGLGYLAGQSELVAMRAAGFSVGRITLSALATGMIFVIATVLMGEV 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A ++ L K + + W + + F ++LP +E
Sbjct: 121 VAPPAQQAANKLRSLAKTGHLSEDGEQGFWSR----NGNNFNHVGRVLPNGQ-YEYIEIF 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI------PIKMDG 236
D + ++ A AI + D L V + I + P +D
Sbjct: 176 EFDNQRRLRIVTQATRAIYHKDGWHLYDVTQRLISTEGIITRRLEEALWESGLSPEMLDV 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+Q ++ Y I + S ++ + + F+ IV P + M +A
Sbjct: 236 VMVDPQQLSAWGLYRYIGYLQQSKQA----AEQYQQAFWSKIVAPFSTLIMMFLAIPFIF 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + G G + + G P A P +L ++L +++L
Sbjct: 292 GPLRSVSVGQRILVGALVGIGFFLFNRLFNQLGLVFDFSPWLGAAFPSLLCLALGVVMLR 351
Query: 357 Q 357
+
Sbjct: 352 R 352
>gi|304410147|ref|ZP_07391766.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
gi|307302142|ref|ZP_07581900.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
gi|304351556|gb|EFM15955.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
gi|306914180|gb|EFN44601.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
Length = 352
Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 128/358 (35%), Gaps = 10/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y + L T+ LL L +I + +G YS+ + VP
Sbjct: 2 KILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGR-GTYSMMDAGIYVLFLVPRD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I+ P L+ ++ L SELV+ +A G+S Q+ + ++ L + +++
Sbjct: 61 IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITMSAMKTAVPLMLLVMVLGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A E+ +L G KS W + D+F+ ++ + T
Sbjct: 121 GAPIAEQKANELQAIKLSGGSLIKSHRGIWAK----DGDLFVNIGEV-ENISKLNNITLY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQK 239
+ + K+ + AD A+ D+ +L V + + D
Sbjct: 176 KFNSELKLTNVVHADRAVFSQDRWRLFDVKRTDLSYEKVVLEYLEEDQWQSSLTPDKLSV 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + + S ++ + + K+N R E + ++ P+ + M L+A S
Sbjct: 236 VSIKPEALSIRGLVGYLDYL-KTNSQDPSRYELALWRKVMQPVTVAVMMLVALSFVFGPL 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A+ P +L ++ + +
Sbjct: 295 RTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAVAPSLLFTGVAFYFIRR 352
>gi|213583965|ref|ZP_03365791.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 342
Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats.
Identities = 65/351 (18%), Positives = 130/351 (37%), Gaps = 19/351 (5%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
+ L + L +I + + G+ NY + VP IQ P L+ +
Sbjct: 1 IMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPKDIQIFFPMAALLGAL 59
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
+ L + SELV+ +A G + Q+ + +I L + T+ + +A GE++ +
Sbjct: 60 LGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRA 119
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
Q G + W + + F+ +++ + + + + ++ + A
Sbjct: 120 QAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELAGISIYAFNDQRRLQSVRYA 174
Query: 197 DLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPIKMDGFQKFSEQFASR 247
A + +L +V E S T++ P K+ + +
Sbjct: 175 ASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSIS 234
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
+ +K + S + R + + I PL + M L+A S RS +
Sbjct: 235 GLHNYVKYLKSSGQ----DAGRYQFNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVR 290
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
V GI GF+ Y + I + P+ AL+P +S+ ++L+K
Sbjct: 291 VVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 341
>gi|225871810|ref|YP_002753264.1| permease, YjgP/YjgQ family [Acidobacterium capsulatum ATCC 51196]
gi|225794430|gb|ACO34520.1| permease, YjgP/YjgQ family [Acidobacterium capsulatum ATCC 51196]
Length = 772
Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats.
Identities = 69/369 (18%), Positives = 138/369 (37%), Gaps = 16/369 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P +L Y + +L+ + L+ ++L+ E+ + + S+ P
Sbjct: 406 PLLLDEYVIREFLRVFVMVLVSFVMLMLFFTFFELVGDIIRN-HSSLLVVGEYLIDLTPS 464
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I I P L+ +VVF +NR+SE+ +A GIS+++++ P +V + L+ +
Sbjct: 465 MIYLITPLAVLIAVLVVFGLMNRSSEITAMKATGISLYRIVLPIMVIASLMAVGLFFFNE 524
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDII-PWM---QISNPQQDIFIGAKKILPENHIWE 177
+ L + K + S WM + IF + P+ + +
Sbjct: 525 YYVPQANRKQQALRNEIKGLPAQTTSHPGEQWMFGKREPGHPGMIFYY-QYFDPDTNTFL 583
Query: 178 DFTSITIDKK-NKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPID--KNSTTLNIP- 231
+ T D + ++ R A +A + + L+ + I + +P
Sbjct: 584 NLTVFEFDPQSFTLMKRTFAQMASWDQKDHRWILQDGWTRTFENHEIQSYQPFAVTTLPE 643
Query: 232 --IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
F+K Q SF ++ ++ ++S F R Q + PL+ + M +
Sbjct: 644 MIETPHYFEKDFRQSTEMSFAQLRHYIADLSQSG-FDTVRLRVQLDRKLADPLITLVMAV 702
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+A +L + V+ I + I ++ G +L AA P IL
Sbjct: 703 LAVPFALSMGKRGSLA-GVSVAIGVAIAYWLISGTFEAMGDVSMLPAFLAAWSPDILFAL 761
Query: 350 LSILILLQK 358
+LL+
Sbjct: 762 AGTYLLLRT 770
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 54/369 (14%), Positives = 117/369 (31%), Gaps = 18/369 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + L L ++F+ +L ++ + + S+ +P I
Sbjct: 3 ILTRYILREILSHGLIGGALFTFVLFMPNLGDLLE-LAVRNSSSMGAVGEAFLLMLPNIF 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IP LV ++ L SE+ RA GI +W+ + V + ++ +
Sbjct: 62 VVVIPMSVLVGILLGLSRLAADSEVTAMRASGIGVWRFVGIVSVIACAAWGLGLVNSLYL 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + I L Q + + + + +++ K W
Sbjct: 122 APWSSRQTIHLEQSLANAQASYEVQPRVFYEDF-KNYVLYVEDVKAGRGAARWGKVFIAN 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV-----KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + A+ A + N +L ++Q P + L+ +
Sbjct: 181 LTNPDAP-SITTAESATVINGPNQTILMRLHDGAQHQL--SPTEPGDYNLSTFTE-TDVP 236
Query: 239 KFSEQFASRSFYEIIKKM------SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ F+ K++ +S+ + + P + + L+
Sbjct: 237 LRTGSQEDVRFHRTDKRILAMTNRELIERSHGKGGTWFFIELQKRLAYPTACLVLMLVGV 296
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + SR I F+ Y + + + + G + P+ + +L I
Sbjct: 297 PLGM-SSRRGGKSGGFVITIALVFIYYFLSSTGTALARQGKIPPLIGVWMANVLFAGCGI 355
Query: 353 LILLQKEDG 361
+L Q G
Sbjct: 356 FLLRQMSTG 364
>gi|24372948|ref|NP_716990.1| hypothetical protein SO_1370 [Shewanella oneidensis MR-1]
gi|24347091|gb|AAN54435.1|AE015581_2 conserved hypothetical protein [Shewanella oneidensis MR-1]
Length = 352
Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats.
Identities = 66/358 (18%), Positives = 126/358 (35%), Gaps = 10/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y + L T+ LL L +I + +G Y++ + VP
Sbjct: 2 KILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGR-GTYTMMDAGIYVLFLVPRD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I+ P L+ ++ L SELV+ +A G+S Q+ + ++ L + + +
Sbjct: 61 IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A E+ +L G KS W + D+F+ ++ + + T
Sbjct: 121 GAPIAEQKANELQAIKLSGGSLIKSHRGIWAK----DGDLFVNIGEV-ADIDKLNNITLY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQK 239
+ + K+ + A+ A+ D L V + + D
Sbjct: 176 KFNSELKLTNVVHAESALFSKDSWLLTDVKRTDLSYDEVKLEHLDEDVWRSSLTPDKLSV 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + + S ++ + + N SN R E + ++ P+ + M L+A S
Sbjct: 236 VSVKPEALSIRGLMGYLEYLN-SNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGPL 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A+ P +L ++ + +
Sbjct: 295 RTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAMAPSLLFTGVAFYFIRR 352
>gi|70728450|ref|YP_258199.1| hypothetical protein PFL_1068 [Pseudomonas fluorescens Pf-5]
gi|68342749|gb|AAY90355.1| membrane protein, putative [Pseudomonas fluorescens Pf-5]
Length = 353
Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats.
Identities = 67/360 (18%), Positives = 129/360 (35%), Gaps = 19/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L L + L + + + E Y++ A P +
Sbjct: 4 LDRYIGSSVFMAILAVLGIILGLASLFAFIDEMGAVNE--TYTVVDVMSYVALTAPRRVY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ ++ +L SEL I RA G+S+ +++ + ++L + VLV +A
Sbjct: 62 EMLPMAGLIGCLIGLGSLASNSELTIMRAAGVSVGRIVWAVMKPMLVLMLVGVLVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ E + +GD Q S W + + FI + P + T
Sbjct: 122 PATETQAQASRALAQGSGDAQSSKHGLWHRQGDE----FIHINAVQPNG-LLYGVTRYHF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNSTTLNIPIKMDGF 237
D + ++ A A + D +L V + +P ++ L+ P +
Sbjct: 177 DDQRHMLSSSFARQARFHEDYWQLTDVTTTYFRDGHTEVISVPGERWDVALS-PQLLSTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + I ++ +N R F+ ++ PL+ A+ L+A S
Sbjct: 236 VMAPESLSISGLWGYIHYLADQGLNNG----RYWLAFWVKVLQPLVTAALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF ++ P+ A L+P + + +L +
Sbjct: 292 PLRSVTLGQRVFTGVLVGFTFRIAQDLLGPSSLVFGFSPLFAVLVPAGICAVAGVWLLRR 351
>gi|160876366|ref|YP_001555682.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
gi|160861888|gb|ABX50422.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
gi|315268556|gb|ADT95409.1| permease YjgP/YjgQ family protein [Shewanella baltica OS678]
Length = 352
Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 129/358 (36%), Gaps = 10/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y + L T+ LL L +I + +G YS+ + VP
Sbjct: 2 KILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGR-GTYSMMDAGIYVLFLVPRD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I+ P L+ ++ L SELV+ +A G+S Q+ + ++ L + +++
Sbjct: 61 IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITMSAMKTAVPLMLLVMVLGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A E+ +L G KS W + D+F+ ++ + + T
Sbjct: 121 GAPIAEQKANELQAIKLSGGSLIKSHRGIWAK----DGDLFVNIGEV-ENINKLNNITLY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQK 239
+ + K+ + AD A+ D+ +L V + + D
Sbjct: 176 KFNSELKLTNVVHADRAVFSQDRWRLFDVKSTDLSYEKVVLEYLEEDQWQSSLTPDKLSV 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + + S ++ + + K+N R E + ++ P+ + M L+A S
Sbjct: 236 VSIKPEALSIRGLVGYLDYL-KTNSQDPSRYELALWRKVMQPVTVAVMMLVALSFVFGPL 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A+ P +L ++ + +
Sbjct: 295 RTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAVAPSLLFTGVAFYFIRR 352
>gi|330899516|gb|EGH30935.1| permease YjgP/YjgQ [Pseudomonas syringae pv. japonica str.
M301072PT]
gi|330975730|gb|EGH75796.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 353
Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats.
Identities = 66/329 (20%), Positives = 118/329 (35%), Gaps = 19/329 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L L L + LV + + + + Y+++ P +
Sbjct: 4 LDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISD--TYTLADALSYVMLTAPRRVY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ L +SEL I RA G+SI +++ + ++L I VLV +A
Sbjct: 62 DTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMIAGVLVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + +GD Q + W + + FI + P + T
Sbjct: 122 PYAENQAQAARSLAQGSGDAQSARHGLWHRQGDE----FIHINTVQPNGLML-GVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNSTTLNIPIKMDGF 237
D + ++ A A D +LK V + P+++ L+ P +
Sbjct: 177 DDQRHMLTSSFAKEAHFKTDYWELKDVATTHFNDGSTEVVNTPVERWDVALS-PQLLSTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + ++ SN R F+ ++ P + VA+ L+A S
Sbjct: 236 IMPPESLSISGLWSYAHYLADQGLSNG----RYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
RS V G+ GF I ++
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLG 320
>gi|282856200|ref|ZP_06265483.1| putative membrane protein, YjgP/YjgQ family [Pyramidobacter
piscolens W5455]
gi|282585959|gb|EFB91244.1| putative membrane protein, YjgP/YjgQ family [Pyramidobacter
piscolens W5455]
Length = 368
Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats.
Identities = 55/367 (14%), Positives = 139/367 (37%), Gaps = 11/367 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L R+ + + L+ ++ +++ L + S+ L +P
Sbjct: 4 FRTLDRFIMRELMGPFLFGVMAFTLIMVAGGLLFKLADLIIEQGVSLGVAGRLFIYELPS 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P L+ +++ F ++ SE+V +A GIS ++ P +V ++ + + ++ +
Sbjct: 64 VVVLTLPMSCLLASLLGFSKMSANSEIVALKAAGISFSRIGRPVLVAALGVTMLSLALNE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD---IFIGAKKILPENHIWED 178
+ G+ ++++ +++ S+P + + K+ + +D
Sbjct: 124 TVVPLGKIAAQNVMRYEVAREKPALLKEQVFLRSSDPSSEGLRRIVYINKLYARSGTMDD 183
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIK 233
K ++ A + L ++ + + L I +
Sbjct: 184 VVVQEF-KGADLVRLTTARKGTWVDGVWYLDDGDVFEVKGRDTVELTLHFKRQALPIRLT 242
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + S E+IK + ++ F+ + +P V + LI A+
Sbjct: 243 PQQISRSTAKPDDMSCLELIKYIEIL-RAQGKSLEPLWVAFHLRLAVPWACVILALIGAA 301
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + R + I F+ Y ++++ +S G++G + PV A +P IL L
Sbjct: 302 LGVRPMRKGGASVGFGQSILIVFVYYVVMSMGRSLGQAGHIPPVLGAWLPNILF-FAGAL 360
Query: 354 ILLQKED 360
+L ++ D
Sbjct: 361 LLARRAD 367
>gi|237799874|ref|ZP_04588335.1| hypothetical protein POR16_13650 [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022729|gb|EGI02786.1| hypothetical protein POR16_13650 [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 353
Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats.
Identities = 64/329 (19%), Positives = 117/329 (35%), Gaps = 19/329 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L L + LV + + + + Y+++ P +
Sbjct: 4 LDRYIGKSVFLAILAVLGIILGLVSLFAFIDEMGDIND--TYTLADALSYVFMTAPRRVY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ +L +SEL I RA G+SI +++ + + L + VLV +A
Sbjct: 62 DTLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLFLMVAGVLVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + +GD Q + W + + FI + P + T
Sbjct: 122 PYAENQAQAARSLAQGSGDAQSARHGLWHRQGDE----FIHINTVQPNGLML-GVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-------IPIDKNSTTLNIPIKMDGF 237
D + ++ A A D +LK V + P ++ +L+ P +
Sbjct: 177 DDQRHMLTSSFAKEAHFKTDYWELKDVSTTHFNEGSTQVINTPEERWDVSLS-PQLLSTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + ++ SN R F+ ++ P + VA+ L+A S
Sbjct: 236 IMPPESLSISGLWSYAHYLADQGLSNG----RYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
RS V G+ GF I ++
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRIIQDLLG 320
>gi|88859093|ref|ZP_01133734.1| hypothetical protein PTD2_08814 [Pseudoalteromonas tunicata D2]
gi|88819319|gb|EAR29133.1| hypothetical protein PTD2_08814 [Pseudoalteromonas tunicata D2]
Length = 354
Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats.
Identities = 67/359 (18%), Positives = 135/359 (37%), Gaps = 10/359 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y + L+TT + LL + + +I E +G +Y + + +P
Sbjct: 2 KILDWYLGRSILQTTGFALLVLVGISTLIKFIEQLKYVGR-GSYDVMTAGLYTLFSIPAD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P TL+ + L SELV+ +A G+S ++++ + ++++ + + +
Sbjct: 61 VVTFFPMATLIGGLTGLGALASNSELVVMQAAGLSRFEIIRSVMKTALVMALCVMAMGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+K +L G + W + D+F+ +
Sbjct: 121 GVPEAQKQAKELRTYAISGGSIFNARQGVWAK----DGDVFLNIDNVDDNGQ-LNGLKMY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI---PIKMDGFQK 239
+K ++ +A AI + D LK V + + +T + + D
Sbjct: 176 QFNKSLDLVAITNAQSAISHRDGWLLKGVKTIYLDEQEVRQENTKEQLYVSELTPDKLGI 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + S SF +I + + K N E + ++ P+ + M L+A S
Sbjct: 236 VSLKAESLSFTGLIGYLDYL-KKNEQDTSSYELALWRKLMQPVSIAVMLLVALSFIFGPL 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + G+ +G + + I L PV A+ P +L I +SI ++ ++
Sbjct: 295 RSVSMGARIVMGVITGIVFHLSDKIFGPIVLVYELSPVVGAVFPSLLFIGISIYLIKKR 353
>gi|197287278|ref|YP_002153150.1| permease [Proteus mirabilis HI4320]
gi|227357022|ref|ZP_03841393.1| inner membrane protein [Proteus mirabilis ATCC 29906]
gi|194684765|emb|CAR46795.1| putative permease [Proteus mirabilis HI4320]
gi|227162825|gb|EEI47785.1| inner membrane protein [Proteus mirabilis ATCC 29906]
Length = 359
Score = 202 bits (515), Expect = 7e-50, Method: Composition-based stats.
Identities = 72/352 (20%), Positives = 135/352 (38%), Gaps = 19/352 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L +Y + L++ L L + L +I + ++G+ +++ + A +
Sbjct: 1 MFGVLDKYIGRTILQSILMTLFLLVSLSGIIKFVDQLRKVGQ-GDFTTLDAGIYAVLNIL 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+Q P L+ ++ L SELV+ +A G + Q+ + +I L + TVL+
Sbjct: 60 KDVQIFFPMAALLGALLGLGALATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTVLIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A GE+ + + ++ W + + FI +I +N + T
Sbjct: 120 EWGAPQGEQYARNYRAEKIMGNSLVSTNRGMWAK----DGNQFIYINRIKSQN-EMQGIT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQY-------GRIPIDKNSTTLNIP 231
D K+ + A A DK LK+V + G+ + T P
Sbjct: 175 LYNFDNNRKLETVRYASSATYDPDKKVWLLKQVEQSDLTSPQKITGKKQVSLEWQTRLTP 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ + + Y+ +K + S + + E F+ I P+ + M L+A
Sbjct: 235 EKLSVVALDPDALSISGLYQYVKYLKQSGQESAN----YELNFWKKIFAPISVAVMMLMA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
S R+ + V GI GF+ Y + + + V AAL+P
Sbjct: 291 LSFIFGPLRTVPMGLRVVTGIAFGFLFYIVNEVSGRLSLVYGIPAVVAALVP 342
>gi|321222550|gb|EFX47622.1| putative Permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
Length = 336
Score = 202 bits (514), Expect = 8e-50, Method: Composition-based stats.
Identities = 64/345 (18%), Positives = 128/345 (37%), Gaps = 19/345 (5%)
Query: 23 GAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNL 82
+ L +I + + G+ NY + VP IQ P L+ ++ L
Sbjct: 1 MLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPKDIQIFFPMAALLGALLGLGML 59
Query: 83 NRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNG 142
+ SELV+ +A G + Q+ + +I L + T+ + +A GE++ + Q G
Sbjct: 60 AQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGG 119
Query: 143 DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY 202
+ W + + F+ +++ + + + + ++ + A A
Sbjct: 120 SLLSTQQGLWAK----DGNNFVYIERVKGDE-ELAGISIYAFNDQRRLQSVRYAASAKFD 174
Query: 203 NDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPIKMDGFQKFSEQFASRSFYEII 253
+ +L +V E S T++ P K+ + + + +
Sbjct: 175 PEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYV 234
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
K + S + R + + I PL + M L+A S RS + V GI
Sbjct: 235 KYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGIS 290
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
GF+ Y + I + P+ AL+P +S+ ++L+K
Sbjct: 291 FGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 335
>gi|157960740|ref|YP_001500774.1| permease YjgP/YjgQ family protein [Shewanella pealeana ATCC 700345]
gi|157845740|gb|ABV86239.1| permease YjgP/YjgQ family protein [Shewanella pealeana ATCC 700345]
Length = 352
Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats.
Identities = 62/359 (17%), Positives = 127/359 (35%), Gaps = 16/359 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y + + T+ LL L +I + +G +Y++ V +P
Sbjct: 2 KILDLYIARILISTSSLALLVLTGLSGIIKWVDQLRVVGR-GSYTMMDAGVYVLFLIPRD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I+ P L+ ++ L SELV+ ++ G+S Q+ + +I L I +++
Sbjct: 61 IELFFPMAVLLGALIGMGMLASNSELVVMQSSGLSRLQITMSAMKTAIPLMILVMMLTEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A E ++ + G +S+ W + +F+ ++ NH D T
Sbjct: 121 VAPVAELRAKEIKRTKVSGGSLIESNRGIWAK----DGPLFVSIGGVVDSNH-LRDITLY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI------DKNSTTLNIPIKMDG 236
+ AD A + +L V + + P K+
Sbjct: 176 EFSDTTDLTSTVHADSAEYRDKYWQLFDVRRTTLKDEQVVLVNLEQDKWISSLTPEKLSV 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E + + + + +N+++ R E + ++ P+ + M L+A S
Sbjct: 236 VSVKPEALSIEGLLDYLDYLESNNQAS----ERYELALWRKLMQPVTVAVMMLVALSFVF 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R+ V G+ +GF Y I L +A +P ++ ++ +
Sbjct: 292 GPLRTVTMGARVLLGVVAGFSFYICSEIFGPLSIVYGLPAFISAGMPALIFSVGALYYI 350
>gi|303230241|ref|ZP_07317009.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-134-V-Col7a]
gi|303231004|ref|ZP_07317747.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-049-V-Sch6]
gi|302514386|gb|EFL56385.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-049-V-Sch6]
gi|302515167|gb|EFL57141.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-134-V-Col7a]
Length = 363
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 66/359 (18%), Positives = 135/359 (37%), Gaps = 12/359 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPL 61
+L +Y K ++ L+ + + I + + Y V+ +P
Sbjct: 3 LLDKYILKAFVGPFLFGVFAFTSI--FIGTGTLFRIAQYITEYGAPLLLVMKAFFLAMPS 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
II P L+ +++ F L+ TSE+V+ RA G+S +L P + ++L+ I V
Sbjct: 61 IILLTFPMSVLLGSLMAFSRLSSTSEIVVMRAGGLSFLRLAMPVYILALLISIGAVAFNE 120
Query: 122 PIATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + ++ ++ N Q + I ++ + AK E+ T
Sbjct: 121 FVVPRTNNMYQTIVREEIMKNASPQTQNHIVLKSMNGDNLSTLMYAKHYDSESKKLSMIT 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMD 235
+ K ++ ++A+ A + + Y + L I +
Sbjct: 181 VQQFNDKGELQQVENAENAEWNGQVWVMHSGIIYDVSAGEGVERTMKFKEQVLPIKSSPN 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q+ + + E+ ++ + K+ ++ + E + Y IPL L+ A +
Sbjct: 241 EVQQDQRKPEELTIKELRHQIK-AYKAAYTNSNKLEMEMYQRFTIPLASFVFALVGAPLG 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L+ RS+ + F+ Y ++T + GK G L AA+IP L I + +
Sbjct: 300 LQKQRSSSSIGFGISILII-FIYYGVMTFAGALGKGGALPTWMAAMIPDTLGIIAGLYL 357
>gi|146308540|ref|YP_001189005.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina ymp]
gi|145576741|gb|ABP86273.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina ymp]
Length = 354
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 122/359 (33%), Gaps = 16/359 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L L + L + + + + +Y + + P
Sbjct: 4 LDRYIGAQVFFAILTVLGIILGLALLFAFIDELSDL-NKGDYGLGQALWYVLLTAPRRAY 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ ++ L SEL I RA G+SI +++ + ++L + +L+ +A
Sbjct: 63 EMLPMAALIGCLIGLGTLASNSELTIMRAAGVSIGRIVWAVMKPMLVLMLAGILIGEYVA 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + G Q S W + ++ + P + T
Sbjct: 123 PLTENQAQADRALAQGGGAAQSSKRGMWHRQ----GQEYVHINAVQPGG-LLLGVTRYRF 177
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEY-----QYGRIPIDKNSTTLNI-PIKMDGFQ 238
D + ++ A A D L+ V + + + + + P +
Sbjct: 178 DDERRLQSASFARRAEHRGDHWVLRNVQTTFLHDNRSEVVNQREERWDIELSPQLLSTVV 237
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
E + ++ I ++ +N R F+ ++ PL+ A+ L+A S
Sbjct: 238 MEPESLSITGLWQYIHYLAEQG----LNNARYWLAFWTKVLQPLVTGALVLMAISFIFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ GF+ ++ P+ A L+P + + +L +
Sbjct: 294 LRSVTLGQRVFTGVLVGFIFRIAQDLLGPSSLVFGFSPLLAVLVPAGICALAGVWLLRR 352
>gi|315634607|ref|ZP_07889891.1| YjgP/YjgQ family membrane protein [Aggregatibacter segnis ATCC
33393]
gi|315476555|gb|EFU67303.1| YjgP/YjgQ family membrane protein [Aggregatibacter segnis ATCC
33393]
Length = 355
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 68/359 (18%), Positives = 140/359 (38%), Gaps = 10/359 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY K L T L + L +I E +G+ Y I + +P
Sbjct: 2 NTLERYIGKSILGTIFATLFMLVGLSAIIKFVEQFRSVGK-GTYDILQAIAYTVLTMPKD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++ P L+ ++ NL SELV+ ++ G S ++ + +I L + T+++
Sbjct: 61 VETFFPMAALLGALIALGNLASRSELVVMQSSGFSRIRIGIAVMKTTIPLVLLTMVIGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
E+ D+ + G W + + F+ + I + D
Sbjct: 121 GIPQTEQFARDMRSKAISGGSMLSVKNGIWAK----DGNNFVYVRSISDDV-ELNDIYIY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQK 239
T +++ ++ K A+ A N K L++V E + + I++ + + D
Sbjct: 176 TFNEQRQLEKMKHANQASFNNGKWTLRQVNESRIQPDEVVTINRLNEDWETNLTPDKLGV 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + S S + ++F ++ + E ++ ++ P+ + M ++A S
Sbjct: 236 ASLRPTSLSISGLSNYIAFLKETGQ-DSRNFELTYWRKLLQPVSVGVMMMLALSFIFGPL 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + GI GF+ Y + + F P+ AL+P +L + ++ +L ++
Sbjct: 295 RSVTAGARILIGISFGFLFYVVNELFGKFSLVYNTTPLIGALMPSVLFLLITWWLLARR 353
>gi|54298618|ref|YP_124987.1| hypothetical protein lpp2682 [Legionella pneumophila str. Paris]
gi|148358636|ref|YP_001249843.1| permease [Legionella pneumophila str. Corby]
gi|296108274|ref|YP_003619975.1| permease [Legionella pneumophila 2300/99 Alcoy]
gi|53752403|emb|CAH13835.1| hypothetical protein lpp2682 [Legionella pneumophila str. Paris]
gi|148280409|gb|ABQ54497.1| permease [Legionella pneumophila str. Corby]
gi|295650176|gb|ADG26023.1| permease [Legionella pneumophila 2300/99 Alcoy]
Length = 356
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 10/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K L L + L I + +G +Y I + V ++P
Sbjct: 4 KILDRYIAKTVLSAIGLVTLMLVGLQIFILFVNQIDDLGR-ADYGIVQAGVFVLLQMPYQ 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P +L+ +V L SELV+ RA GISI Q+ + S+++ + +
Sbjct: 63 VYLFFPIASLLGCLVGLGVLANHSELVVMRAAGISIGQITGAVLKASLIVILLITSLGET 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + G + W++ N F+ + EN
Sbjct: 123 IVPVMAHYANEYKVSALTGGQALLTPRGVWVRNGND----FVSIASVTHENT-LRYVNQF 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI---PIDKNSTTLNIPIKMDGFQK 239
D ++ + + N+ V + ++ ++ ++P+K + +
Sbjct: 178 RFDNQHNLKLARQISEVKYVNNSWIAYDVKQTEFAEDHTKAYHFDTLPWDVPVKPEILKI 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ +E+ + + + N + + F+ I PL + M ++A
Sbjct: 238 TGTNPDEMTLHELNRYLREQ-QRNHQNVSNYKFAFFQRITQPLNTMVMMILAIPFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS+ + G GF + + P AA P ++ + I ++ +
Sbjct: 297 RSSTMGSKLLVGAMVGFGFHILNRFFGPVSTVFQWPPELAAFSPTLIFSLIGIYLMRR 354
>gi|229845238|ref|ZP_04465371.1| predicted permease [Haemophilus influenzae 6P18H1]
gi|229811833|gb|EEP47529.1| predicted permease [Haemophilus influenzae 6P18H1]
Length = 358
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 75/368 (20%), Positives = 138/368 (37%), Gaps = 18/368 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L VI E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGAIFATLMTLVGLSAVIKFVEQFRSVGK-GTYDIWQAVIFTGLTMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELV+ ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVVMQSAGFSRFKIGMAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + + F+ +++ + +D
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKNGVWAK----DGNNFVFVRRVTDD-AKLDDIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDKNSTTLN------IPI 232
T D+++ + K ++ A D K L++V + I + L P
Sbjct: 175 IYTFDQQHNLTELKHSNQASYSEDEAKWTLRQVNHSTITKDEIITTNHLLETWETSLTPD 234
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + Y I + + + R E F+ I P+ + M L+A
Sbjct: 235 KLGAVSLRPTSLSISGLYHYISFLRETGQ----DVSRFELTFWRKIFQPISVGVMMLLAL 290
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + GI GF+ Y + I+ + + ALIP +L I +
Sbjct: 291 SFIFGSLRSVTAGARIVTGICVGFLFYVVNEILGQMSVVYGIPAIFGALIPSLLFIVMIW 350
Query: 353 LILLQKED 360
+L K D
Sbjct: 351 WLLSHKRD 358
>gi|21674368|ref|NP_662433.1| hypothetical protein CT1549 [Chlorobium tepidum TLS]
gi|21647546|gb|AAM72775.1| membrane protein, putative [Chlorobium tepidum TLS]
Length = 384
Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats.
Identities = 68/365 (18%), Positives = 146/365 (40%), Gaps = 14/365 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY + +L L+ L L +I+L E ++ + + S R + + +P
Sbjct: 27 FTIIDRYIARQFLTIFLFALASFAALFILINLVENLDRFLDR-HISFGRILIYYLSGLPD 85
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P L+ ++ V L+ SEL ++ G+S+ +L+ PF++ ++ + +
Sbjct: 86 TFLLTSPLSVLLASLFVTGKLSMQSELPALKSAGMSLSRLMKPFLLVTMAIAALNTINSC 145
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA + +++ K++ D + + KI P+ +
Sbjct: 146 FIAPAMYDWSKGFEKRYL----KKQQDNGEEPLHIRESNNRILTVAKIGPDKKSATTVSL 201
Query: 182 ITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPI----DKNSTTLNIPIKMD 235
T + ++I+ R DAD I + + + + + TL + + +
Sbjct: 202 ETFN-GSQIVSRIDADSLRIITRHKYWIFYNTKQRTFSKGAETLVTRAGADTLKLSLAPN 260
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F+ + + I + +S + RA + + + +PL + + LI +S
Sbjct: 261 TFKMIDTDPDEMNIVQHIDFIWQKARSGLPGLERATVKLHTKLALPLASMIIVLIGVPLS 320
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ RS + ++ + G + ++ + S G G+L PV AA +P IL I ++ L
Sbjct: 321 SKKKRSG-LAVEISISLLIGLLYLGMLKTIGSLGYDGLLNPVLAAWLPDILFI-IAGTFL 378
Query: 356 LQKED 360
+ D
Sbjct: 379 YRSAD 383
>gi|52842835|ref|YP_096634.1| permease [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|52629946|gb|AAU28687.1| permease [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
Length = 356
Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats.
Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 10/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K L L + L I + +G +Y I + V ++P
Sbjct: 4 KILDRYIAKTVLSAIGLVTLMLVGLQIFILFVNQIDDLGR-ADYGIVQAGVFVLLQMPYQ 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P +L+ +V L SELV+ RA GISI Q+ + S+++ + +
Sbjct: 63 VYLFFPIASLLGCLVGLGVLANHSELVVMRAAGISIGQITGAVLKASLIVILLITSLGET 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + G + W++ N F+ + EN
Sbjct: 123 IVPVMAHYANEYKVSALTGGQALLTPRGVWVRNGND----FVSIASVTHENT-LRYVNQF 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI---PIDKNSTTLNIPIKMDGFQK 239
D ++ + + N+ V + ++ ++ ++P+K + +
Sbjct: 178 RFDNQHNLKLARQISEVKYVNNSWIAYDVKQTEFAEDHTKAHHFDTLPWDVPVKPEILKI 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ +E+ + + + N + + F+ I PL + M ++A
Sbjct: 238 TGTNPDEMTLHELNRYLREQ-QRNHQNVANYKFAFFQRITQPLNTMVMMILAIPFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS+ + G GF + + P AA P ++ + I ++ +
Sbjct: 297 RSSTMGSKLLVGAMVGFGFHILNRFFGPVSTVFQWPPELAAFSPTLIFSLIGIYLMRR 354
>gi|170725440|ref|YP_001759466.1| permease YjgP/YjgQ family protein [Shewanella woodyi ATCC 51908]
gi|169810787|gb|ACA85371.1| permease YjgP/YjgQ family protein [Shewanella woodyi ATCC 51908]
Length = 352
Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 126/358 (35%), Gaps = 16/358 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y + + T+ LL L +I + +G +Y++ + +P I
Sbjct: 3 ILDFYIARTLVSTSALCLLILTGLSGIIKWVDQLRVVGR-GSYTMLDAGIYVLFLIPRDI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ ++ L SELV+ ++ G+S Q+ + ++ L + + +
Sbjct: 62 EMFFPMAVLLGALIGMGMLASNSELVVMQSAGLSRLQITLSAMKTAVPLMLIIMALGEWG 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + E+ +L G KS W + D+F+ ++ + + + T
Sbjct: 122 APAAEQKAYELQATKISGGSLIKSSRGIWAK----DGDLFVNIGEV-EDINNLRNITLYK 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL------NIPIKMDGF 237
+ + A+ + D +L V + + TL P K+
Sbjct: 177 FNSDLALTRTIHAERGVFSKDHWRLLDVRQTDLTDERVTLTDLTLYRWESTLTPDKLSVV 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + + + +N+ R E + + P+ + M L+A S
Sbjct: 237 SVKPESLSIQGLIGYLDYLEVNNQ----DASRYELALWRKFMQPVTVAVMMLVALSFVFG 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R+ V G+ +GF Y I L A++P ++ +I +
Sbjct: 293 PLRTVTMGARVLLGVIAGFSFYISSEIFGPLTLVYGLPAYIGAMMPALIFGVGAIYFI 350
>gi|292493020|ref|YP_003528459.1| permease YjgP/YjgQ family protein [Nitrosococcus halophilus Nc4]
gi|291581615|gb|ADE16072.1| permease YjgP/YjgQ family protein [Nitrosococcus halophilus Nc4]
Length = 354
Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats.
Identities = 67/362 (18%), Positives = 138/362 (38%), Gaps = 18/362 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K + TL LL + L ++ ++GE NY + A +P
Sbjct: 2 KILDRYVAKAVISNTLLVLLVLIALYTFVEFITELEEVGE-GNYGVMDALRYTAYSIPQY 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I ++P L+ +++ +L SELV RA G S+ ++ + ++ + T+L+
Sbjct: 61 IYDLLPVAALLGSVLGLGSLAGQSELVAMRAAGFSVGRITRSALATGMIFVVVTILMGEV 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A ++ L K ++++ W + +N F ++LP ++D
Sbjct: 121 LAPPAKQAANTLRSLAKTGHLSEQAERGFWTRNNNN----FNRIGRVLPNGQ-YQDIEIF 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY-------QYGRIPIDKNSTTLNIPIKMD 235
D+++++ A A + D L + + R+P ++L+ P +D
Sbjct: 176 EFDEQHRLRVISRAAGATYHRDGWHLSDITQRIISSQGITTRRLPEALWESSLS-PEMLD 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+Q ++ Y I + + ++ + + F+ + P + M +A
Sbjct: 235 VVMVDPQQLSAWGLYRYIDYLEENKQA----TEQYQQAFWSKVFAPFNTLIMMFLAIPFI 290
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS + G G + + G AA P +L L +++L
Sbjct: 291 FGPLRSVSMGQRILVGALVGIGFFLFNRLFNQLGLVFEFSSWLAAAFPSLLFFGLGMVML 350
Query: 356 LQ 357
+
Sbjct: 351 RR 352
>gi|78188283|ref|YP_378621.1| hypothetical protein Cag_0302 [Chlorobium chlorochromatii CaD3]
gi|78170482|gb|ABB27578.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
Length = 359
Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats.
Identities = 73/355 (20%), Positives = 140/355 (39%), Gaps = 13/355 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY F+ ++K L+ L + L +I++ E + + S A +P I
Sbjct: 2 KILERYIFQQFIKAFLFTALVFVSLFIIINMIEKLGNFMDH-HVSALEIARYYLLSIPSI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P L+ +I+V L +EL R+ G+S+ QLL PF G++LL +F
Sbjct: 61 FLVTSPVSALLASILVAGKLATQNELPAIRSAGVSMRQLLTPFAWGALLLFLFNFFNAGW 120
Query: 123 IATSGEKIGIDLIQQWKD-NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A + Q + N Q++ + + + FI P N + +
Sbjct: 121 LAPTTYSHNRTFEQLYLGKNAGDQETRNLHLL----DSGNRFISIGAFNPINESLNNVSI 176
Query: 182 ITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYG---RIPIDKNSTTLNIPIKMDG 236
+ +I R DAD + + +V E + + K + T+ + ++
Sbjct: 177 ERL-SGATMISRIDADSMHYNRRTKRWTMWRVTERYFSNGYQSFTTKPTATIRLALRPKA 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ Q + + + ++ R+ +F+ I +P + +TLI ++
Sbjct: 236 LHEMRLQPDEITLPRHYQFLREKEEAGFSGLERSAVKFHNKIAMPFASLIITLIGVPLAA 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
R +A +F GF+ I + G G+L P+ AA +P +L + +
Sbjct: 296 RKKR-GGIAAEIAITLFIGFLYLGIQRTIAIAGYQGVLPPIVAAWLPNLLFLVVG 349
>gi|301059203|ref|ZP_07200141.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
gi|300446693|gb|EFK10520.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
Length = 358
Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats.
Identities = 66/362 (18%), Positives = 140/362 (38%), Gaps = 15/362 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY K + K + L + L +ID + + S A ++P I
Sbjct: 2 NVLTRYLLKEFFKLLIVCQLVFIALYLMIDFASGIDDFIK-AGAPKSVMIAYFAFKIPAI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
Q++P L I++F + R +E+V +A G++ WQ+ P V+ + L +
Sbjct: 61 AGQMLPPAVLTTVIILFSLMKRNNEVVALKASGVNTWQVAQPLVLLAAFLSVVLFFFSET 120
Query: 123 IATSGEKIGIDLIQ---QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
I ++ + + + G + + W + N K+ + D
Sbjct: 121 IVPYASSRCNEIWRIEVKKEHPGRFHGQNHV-WYKGKN----CIYFIKQFDSRKMMMVDP 175
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKV----VEYQYGRIPIDKNSTTLNIPIKMD 235
T D K KI R D AI + +++ E G + + +
Sbjct: 176 TFYFFDDKFKIARRIDGRRAIWKENGWQVQNGIVQNREKDGGYDLQKFDHLEVKLDENPK 235
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F + + + + ++ K+ + K + R + I P +++ MTL+ ++
Sbjct: 236 DFIRENVEPEEMGYRQL-KRFAQRLKLEGYDANRYFVELNIKIAFPFIVLIMTLMGIPIA 294
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L + + + V+ GI F+ I+ + ++ G +GIL P+ +A + + + ++
Sbjct: 295 L-WKKGMGTPVAVSIGIALCFVYLLILGLARTLGFAGILPPLFSAWLANSIFLFFGAYMM 353
Query: 356 LQ 357
+
Sbjct: 354 IH 355
>gi|145631589|ref|ZP_01787355.1| predicted permease [Haemophilus influenzae R3021]
gi|144982789|gb|EDJ90315.1| predicted permease [Haemophilus influenzae R3021]
Length = 358
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 76/368 (20%), Positives = 139/368 (37%), Gaps = 18/368 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELV+ ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVVMQSAGFSRFKIGMAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + F+ +++ + +D
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKNGVWAK----DGHHFVFVRRVTDD-TKLDDIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPI------DKNSTTLNIPI 232
T D+++ +I K A+ A D K L++V + I + T P
Sbjct: 175 IYTFDQQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPD 234
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + Y I + + + R E F+ I P+ + M L+A
Sbjct: 235 KLGAVSLRPTSLSISGLYHYISFLRETGQ----DVSRFELTFWRKIFQPVSVGVMMLLAL 290
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + GI GF+ Y + I+ + + ALIP +L I +
Sbjct: 291 SFIFGSLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIW 350
Query: 353 LILLQKED 360
+L +K D
Sbjct: 351 WLLSRKRD 358
>gi|284049007|ref|YP_003399346.1| permease YjgP/YjgQ family protein [Acidaminococcus fermentans DSM
20731]
gi|283953228|gb|ADB48031.1| permease YjgP/YjgQ family protein [Acidaminococcus fermentans DSM
20731]
Length = 363
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 60/364 (16%), Positives = 128/364 (35%), Gaps = 15/364 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K ++ L+ + + Q S S L +P +I
Sbjct: 3 ILDKYILKQMMQPFLFGVAAFSTIFVASSFLFRVTQYITQYGASYSSLIRLFLCLMPEVI 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ L+ SE+ R+ G+S ++ P + ++ +F+V+ +
Sbjct: 63 NYTFPMSMLLAALLTMGQLSSNSEITAMRSGGLSFRRIAAPILAAGFVVSLFSVVWAEKV 122
Query: 124 ATSGEKIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ +I+ + K + + + + Q+S Q A+ + + +D T
Sbjct: 123 VPPAKSEYERIIKVEIKRDTKPRTQNHVLIKQVSKGQLVRLTYARTFDEKQGMMKDITIE 182
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL--------NIPIKM 234
D K+ + A ++ + T P +
Sbjct: 183 DWD-NGKVARIQRTPQAKWTQGTWIMEGGTITDLTGKDGVARTMTFDKQVLPISETPKAI 241
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
QK +Q I + K + E + Y +PL LI +
Sbjct: 242 TLDQKDPDQMTIGELKMYIDIL----KRQYMPTSKYEMEIYRRFTVPLASFFFALIGVPL 297
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ R+ + + + + F+ Y+I+T M G+ G++ P+ AA P +L + +
Sbjct: 298 GVQSQRTG-ASMGLGFSVVIIFIYYSIMTFMTGLGQGGVIPPLLAAATPNLLCGAFGCWM 356
Query: 355 LLQK 358
+ +K
Sbjct: 357 IYKK 360
>gi|269792897|ref|YP_003317801.1| permease YjgP/YjgQ family protein [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100532|gb|ACZ19519.1| permease YjgP/YjgQ family protein [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 356
Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats.
Identities = 50/351 (14%), Positives = 133/351 (37%), Gaps = 12/351 (3%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITL 72
+ F + + + + ++ Q G S+ L +P ++ IP +L
Sbjct: 10 FAFGVAAFTVLMVAGSLLFRIADLVIQRG----VSLGVVVRLFLYYLPGVVVTTIPMGSL 65
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
+ ++ F L+ SE+V +A G+ +++ P VV S L + T ++ + E+
Sbjct: 66 LGALMGFGKLSSHSEIVALKACGVPFRRMVRPLVVASALASVVTFVLNETVVPLSERAAR 125
Query: 133 DLIQQWKDNGDKQKSDIIPWMQISNPQQ-DIFIGAKKILPENHIWEDFTSITIDKKNKII 191
+++ + +++ I +I P E + ++
Sbjct: 126 NVLAYEIMRERPPEFKERMFLREEGSSGLRRVIYMDRIRPRTGEMEGVLVQEF-EGGRLS 184
Query: 192 HRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
A A+ + K +++ ++ + +L + + + S +
Sbjct: 185 RLTSARRAVWRDGKWTMEEGKTFEVAPDGGVKFLYSFARESLRLDLSPARVEAQSTDPSQ 244
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
S +++ +++ + + F+ + +P + + L+ AS + RS +
Sbjct: 245 MSVFQMAEQIGLMER-QGSDATKLRVMFHLRLAVPWASLVLALVGASAGVRPQRSGGAGV 303
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + F+ Y +++ +S G++ L PV AA +P ++ + ++ +
Sbjct: 304 GLGLSVVIVFLYYVVLSFCQSLGEASYLPPVVAAWVPNLVFGVAGLFMVRR 354
>gi|90408709|ref|ZP_01216858.1| hypothetical protein PCNPT3_03815 [Psychromonas sp. CNPT3]
gi|90310191|gb|EAS38327.1| hypothetical protein PCNPT3_03815 [Psychromonas sp. CNPT3]
Length = 354
Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 135/359 (37%), Gaps = 10/359 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
GIL RY K T L + L +I E +G+ +Y + ++P+
Sbjct: 2 GILDRYIGKTVFAATFLTLFVLLGLSSIIKFVEQMRSVGQ-GSYDVLAAGYFVLLKMPVE 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ ++ +L +SELV+ +A G+S +++ + ++ + +L+
Sbjct: 61 MTVFFPMAALIGALIGLGSLASSSELVVMQAAGMSKFRIAGAVLKTAVPMVFAVMLLAEF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A +K + + + W++ D FI ++ + +
Sbjct: 121 VAPVTDKEAYSMRDLARSGQSSVSNKYGVWVK----DADAFISIGRMNSQ-SELFNVRFY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKK--VVEYQYGRIPID-KNSTTLNIPIKMDGFQK 239
++ ++ H A L+ +++ R ++ K+S +
Sbjct: 176 FFNESMQLDHAVLAKKVSYRGGYWLLEDSTWTKFESDRTNVEHKDSDVWQTDLTPKKLDV 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S +I +++ +N R + V+P +V M L++ S
Sbjct: 236 ILSDPSKMSMRDIYGYITYLE-NNQQDANRYLLILWRKAVLPFTVVVMMLLSVSFIFGGL 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R+ + GI SGF + + L P+ AL+P +L + +++ +L ++
Sbjct: 295 RTVTMGTRLILGIASGFAFHVSGELFGPASLVFGLSPLLGALLPSMLVLCIAMYLLRRQ 353
>gi|302392908|ref|YP_003828728.1| permease [Acetohalobium arabaticum DSM 5501]
gi|302204985|gb|ADL13663.1| permease YjgP/YjgQ family protein [Acetohalobium arabaticum DSM
5501]
Length = 364
Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats.
Identities = 66/367 (17%), Positives = 134/367 (36%), Gaps = 17/367 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY L L+ + + D+ + S L +P +
Sbjct: 2 KIIDRYLLTELLSPLLFGIFAFTSIFVGTDILFELADLMIEWGVSAVTAGQLFILSLPEV 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I P L+ ++ F L+ SE+V +A G+S +L+ P ++ ++LL T+L
Sbjct: 62 IVLTFPMSMLLATLLSFGRLSGDSEVVALKAGGVSFIRLIIPVLIVALLLSGLTILANET 121
Query: 123 IATSGEKIGIDLIQQWKDN---GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
I + ++ K QK+ I + + D A + E+
Sbjct: 122 IVPQSKDAYRRIVWNIKHQEKMPTTQKNLRIAPLDKKTGKIDYIFYAYHFDGSDLTMEEV 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY----QYGRIPIDKNSTTL----NIP 231
+ + K++ +A A +++ + Y + ++ + T+ P
Sbjct: 182 SLQDY-QNGKLVQVIEAKRARWTDERWQFIDGTIYNVNSKDKVPTMEFETYTVKKLNREP 240
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
++ QK ++ + I K + +Y IP LI
Sbjct: 241 KEISRAQKDPDEMSIEELNRHINLKEEEGK----DVASLKVLYYQRYAIPFSCFIFALIG 296
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
A + L+ +RS I + I F+ YT++TI + G++G L P A + I+ +
Sbjct: 297 APLGLQPNRSG-ASIGLGLSIVIIFIYYTLMTIGSTLGQTGTLPPAVGAWLQNIIFGLVG 355
Query: 352 ILILLQK 358
++++
Sbjct: 356 TGLIIKM 362
>gi|294012649|ref|YP_003546109.1| putative permease [Sphingobium japonicum UT26S]
gi|292675979|dbj|BAI97497.1| putative permease [Sphingobium japonicum UT26S]
Length = 367
Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats.
Identities = 58/360 (16%), Positives = 126/360 (35%), Gaps = 8/360 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y + +L T L + ++ +DL + ++ A R P I+
Sbjct: 12 LGWYMARLFLTRTFAVLAMLVAVLQTLDLLGESGDILAYAGNGDAQLWHYVALRAPQIVA 71
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ +PF L+ +++ +LN+ SE++ +A G+S Q+L P + ++ + + + I
Sbjct: 72 RFLPFSVLLGTLIMLASLNQNSEIISMKAAGLSAHQILAPLLAAALGVALISYAFNERIV 131
Query: 125 TS-GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ + + PW++ N I A +
Sbjct: 132 ARSTARLSAWQAVDYGPLPPETGVKASPWVRDGNNLVTAAIVAGR--GTAVQLRKVEIFN 189
Query: 184 IDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKF 240
N + A L+ ++ R + + I+ D F
Sbjct: 190 RI-NNTLTTIVQAPRGHYDASTRSWVLEDARQFDVARGTERQIGTVRFGRDIRPDQFTLA 248
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ +F ++ +S + + E + + PL + M ++ + + +R
Sbjct: 249 KVDPDALTFSQLQAAISDLHDAG-RPTAELEGSLWHKLSGPLSALLMPILGSVAAFGLAR 307
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S Q + G+ GF + + G G P AA P +L + + +L + E+
Sbjct: 308 SGQLFVRAVLGMALGFAYFVADNFSLAMGNLGAYPPFLAAWAPFLLFLLVGETVLFRTEE 367
>gi|54295468|ref|YP_127883.1| hypothetical protein lpl2554 [Legionella pneumophila str. Lens]
gi|53755300|emb|CAH16794.1| hypothetical protein lpl2554 [Legionella pneumophila str. Lens]
gi|307611506|emb|CBX01180.1| hypothetical protein LPW_28791 [Legionella pneumophila 130b]
Length = 356
Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats.
Identities = 59/358 (16%), Positives = 122/358 (34%), Gaps = 10/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K L L + L I + +G +Y I + V ++P
Sbjct: 4 KILDRYIAKTVLSAIGLVTLMLVGLQIFILFVNQIDDLGR-ADYGIVQAGVFVLLQMPYQ 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P +L+ +V L SELV+ RA GISI Q+ + S+++ + +
Sbjct: 63 VYLFFPIASLLGCLVGLGVLANHSELVVMRAAGISIGQITGAVLKASLIVILLITSLGET 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + G + W++ N F+ + EN
Sbjct: 123 VVPVMAHYANEYKVSALTGGQALLTPRGVWVRNGND----FVSIASVTRENT-LRYVNQF 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI---PIDKNSTTLNIPIKMDGFQK 239
D ++ + + N+ V + ++ ++ ++P+K + +
Sbjct: 178 RFDNQHNLKLARQISEIKYVNNSWIAYDVKQTEFAEDHTKAYHFDTLPWDVPVKPEILKI 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ +E+ + + + N + + F+ I PL + M ++A
Sbjct: 238 TGTNPDEMTLHELNRYLREQ-QRNHQNVANYKFAFFQRITQPLNTMVMMILAIPFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS+ + G GF + + P AA P ++ + I ++ +
Sbjct: 297 RSSTMGSKLLVGAMVGFGFHILNRFFGPVSTVFQWPPELAAFSPTLIFSLIGIYLMRR 354
>gi|145635440|ref|ZP_01791141.1| predicted permease [Haemophilus influenzae PittAA]
gi|145641037|ref|ZP_01796618.1| predicted permease [Haemophilus influenzae R3021]
gi|145267314|gb|EDK07317.1| predicted permease [Haemophilus influenzae PittAA]
gi|145274198|gb|EDK14063.1| predicted permease [Haemophilus influenzae 22.4-21]
Length = 358
Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats.
Identities = 78/368 (21%), Positives = 140/368 (38%), Gaps = 18/368 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L T L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGTIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + F+ +++ + +D
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKNGVWAK----DGHHFVFVRRVTDD-TKLDDIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPI------DKNSTTLNIPI 232
T D+++ +I K A+ A D K L++V + I + T P
Sbjct: 175 IYTFDQQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPD 234
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + Y I + + + R E F+ I P+ + M L+A
Sbjct: 235 KLGAVSLRPTSLSISGLYHYISFLRETGQ----DVSRFELTFWRKIFQPVSVGVMMLLAL 290
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + GI GF+ Y + I+ + + ALIP +L I +
Sbjct: 291 SFIFGSLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIW 350
Query: 353 LILLQKED 360
+L +K D
Sbjct: 351 WLLSRKRD 358
>gi|289523522|ref|ZP_06440376.1| membrane protein, YjgP/YjgQ family [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289503214|gb|EFD24378.1| membrane protein, YjgP/YjgQ family [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 369
Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats.
Identities = 62/362 (17%), Positives = 134/362 (37%), Gaps = 15/362 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L ++ + T ++ ++ +L+ DL + S L R+P
Sbjct: 8 FRLLDKFIITEFYPTFVFGVMVFTVLLVAGDLLFDIADLLIQSRVPFSIVIRLFVYRLPG 67
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I +P L+ I+ F L SEL RA GIS +++L P + SIL+G F +L+
Sbjct: 68 VIVLTLPMAALLATILSFGKLATQSELTALRASGISFYRILRPVFLASILIGGFALLLNE 127
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI-FIGAKKILPENHIWEDFT 180
+ ++ ++++ +++ I K+ P+ +D
Sbjct: 128 TLVPLADRAADNIMRYEVARQKPSLLKEQMFLKEERDGALSRVIYIGKLFPQEGNMDDVL 187
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-------IPIDKNSTTLNI-PI 232
+ +I A + L + + +K +L + P
Sbjct: 188 IQEF-ESGEITRILTAKNGDWKEGQWWLYNGQVFNVTKEGFVEPLFSFEKQQLSLPLSPS 246
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
++ + ++ ++ Y IK M+ + + +P V + L+ A
Sbjct: 247 QVVTSSQDPKKMSAFELYNYIKLMNVQGS----DVNSLWVLLHLRLAVPWASVVLALVGA 302
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
SV +R + + + I F Y ++ +S G+ G + P+ AA +P ++ +
Sbjct: 303 SVGAG-TRRSGSGMGIGVSILLVFAYYVFMSFCRSLGQGGYIPPLLAAWMPNLIFLVCGA 361
Query: 353 LI 354
+
Sbjct: 362 FM 363
>gi|332535154|ref|ZP_08410963.1| hypothetical protein PH505_cf00160 [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035424|gb|EGI71923.1| hypothetical protein PH505_cf00160 [Pseudoalteromonas haloplanktis
ANT/505]
Length = 354
Score = 199 bits (506), Expect = 7e-49, Method: Composition-based stats.
Identities = 54/363 (14%), Positives = 126/363 (34%), Gaps = 18/363 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y + L+TT + LL + + +I + +G +Y + + +P
Sbjct: 2 KTLDWYLGRSILQTTGFALLVLVGISTLIKFIDQLKSVGR-GSYDLMTAMLYTLYTIPGD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ + L SELV+ +A G+S Q++ + +I + + + +
Sbjct: 61 LVVFFPMAALIGGLTGLGALASNSELVVMQAAGMSRLQIIGSVMKTAIFMAVCMMALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A + ++ Q GD + W + FI + +
Sbjct: 121 GAPEAQLHAKEMRNQAIHGGDVFNTQKGVWAK----DGSNFINIEDVDENG-RLNGVHMY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV-------VEYQYGRIPIDKNSTTLNIPIKMD 235
DK ++ A A+ + L+ V + ++P + + L K+
Sbjct: 176 HFDKSLELTQITKAKDALSRKEGWLLRDVNKVIITSEKTTTEQLPEEFYPSQL-TAEKLG 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
E + + + + + + E + ++ P+ + M L+A S
Sbjct: 235 VVSVKPESLSFTGLWSYLTYLEQNEQ----DTSTYELALWRKLMQPVSVAVMLLVALSFI 290
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R+ + G+ +G + + I + + A++P I+ I + ++
Sbjct: 291 FGPLRTVTMGARIIMGVVTGIVFHLTNEIFGPVVMVYQIPAIIGAVLPSIIFIGFATYLM 350
Query: 356 LQK 358
++
Sbjct: 351 NKR 353
>gi|68250306|ref|YP_249418.1| permease [Haemophilus influenzae 86-028NP]
gi|145633638|ref|ZP_01789365.1| predicted permease [Haemophilus influenzae 3655]
gi|148825754|ref|YP_001290507.1| leucyl aminopeptidase [Haemophilus influenzae PittEE]
gi|229847324|ref|ZP_04467426.1| leucyl aminopeptidase [Haemophilus influenzae 7P49H1]
gi|68058505|gb|AAX88758.1| predicted permease [Haemophilus influenzae 86-028NP]
gi|144985515|gb|EDJ92331.1| predicted permease [Haemophilus influenzae 3655]
gi|148715914|gb|ABQ98124.1| leucyl aminopeptidase [Haemophilus influenzae PittEE]
gi|229809749|gb|EEP45473.1| leucyl aminopeptidase [Haemophilus influenzae 7P49H1]
Length = 358
Score = 198 bits (505), Expect = 8e-49, Method: Composition-based stats.
Identities = 81/365 (22%), Positives = 144/365 (39%), Gaps = 12/365 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L T L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGTIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + F+ +++ + +D
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKNGVWAK----DGHHFVFVRRVTDD-TKLDDIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYND--KVKLKKV---VEYQYGRIPIDKNSTTLNIPIKMD 235
T D+++ +I K A+ A D K L++V + I + S T + D
Sbjct: 175 IYTFDQQHNLIKLKHANQASYSEDEAKWTLRQVNHSTIMKDEIITTNHLSETWETSLTPD 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
S + S S + +SF ++ R E F+ I P+ + M L+A S
Sbjct: 235 KLGAVSLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFI 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS + GI GF+ Y + I+ + + ALIP +L I + +L
Sbjct: 294 FGSLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLL 353
Query: 356 LQKED 360
+K D
Sbjct: 354 SRKRD 358
>gi|301170458|emb|CBW30065.1| conserved inner membrane protein [Haemophilus influenzae 10810]
Length = 358
Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats.
Identities = 77/368 (20%), Positives = 139/368 (37%), Gaps = 18/368 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + F+ +++ + +D
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKNGVWAK----DGHHFVFVRRVTDD-TKLDDIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPI------DKNSTTLNIPI 232
T D+++ +I K A+ A D K L++V + I + T P
Sbjct: 175 IYTFDQQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKEEIITTNHLSETWETSLTPD 234
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + Y I + + + R E F+ I P+ + M L+A
Sbjct: 235 KLGAVSLRPTSLSISGLYHYISFLRETGQ----DVSRFELTFWRKIFQPVSVGVMMLLAL 290
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + GI GF+ Y + I+ + + ALIP +L I +
Sbjct: 291 SFIFGSLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIW 350
Query: 353 LILLQKED 360
+L +K D
Sbjct: 351 WLLSRKRD 358
>gi|121635228|ref|YP_975473.1| hypothetical protein NMC1491 [Neisseria meningitidis FAM18]
gi|120866934|emb|CAM10694.1| conserved hypothetical integral membrane protein [Neisseria
meningitidis FAM18]
gi|261392197|emb|CAX49711.1| conserved hypothetical integral membrane protein [Neisseria
meningitidis 8013]
gi|325142744|gb|EGC65119.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
961-5945]
Length = 356
Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats.
Identities = 61/364 (16%), Positives = 142/364 (39%), Gaps = 18/364 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ +V L SEL + +A G+S +LL + I TV +
Sbjct: 61 AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + ++ NG + W++ N I +++LP+ H
Sbjct: 121 VAPTLSQKAENIKAAA-INGKISTGNTGIWLKEKN----SIINVREMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKM-D 235
+ KN++ +AD A++ + +LK + G ++ + + +++ + D
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMD 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+Q + I+ + +++ + ++ +V P M L+A + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHLQNNSQ----NTRIYAIAWWRKLVYPAAAWVMALVAFAFT 290
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + + GI G + + + + P A +P I L++ ++
Sbjct: 291 PQTTRHGNMGLKLFGGICLGLLFHLAGRFFGFTSQLYGIPPFLAGALPTIAFALLAVWLI 350
Query: 356 LQKE 359
++E
Sbjct: 351 RKQE 354
>gi|148827126|ref|YP_001291879.1| permease [Haemophilus influenzae PittGG]
gi|148718368|gb|ABQ99495.1| predicted permease [Haemophilus influenzae PittGG]
Length = 358
Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats.
Identities = 77/368 (20%), Positives = 139/368 (37%), Gaps = 18/368 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + F+ +++ + +D
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKNGVWAK----DGHHFVFVRRVTDD-TKLDDIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPI------DKNSTTLNIPI 232
T D+++ +I K A+ A D K L++V + I + T P
Sbjct: 175 IYTFDQQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPD 234
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + Y I + + + R E F+ I P+ + M L+A
Sbjct: 235 KLGAVSLRPTSLSISGLYHYISFLRETGQ----DVSRFELTFWRKIFQPVSVGVMMLLAL 290
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + GI GF+ Y + I+ + + ALIP +L I +
Sbjct: 291 SFIFGSLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIW 350
Query: 353 LILLQKED 360
+L +K D
Sbjct: 351 WLLSRKRD 358
>gi|309972901|gb|ADO96102.1| Lipopolysaccharide export permease, LptG [Haemophilus influenzae
R2846]
Length = 358
Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats.
Identities = 77/368 (20%), Positives = 140/368 (38%), Gaps = 18/368 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + +G W + F+ +++ + +D
Sbjct: 120 EWGIPQTEQFARDMRAKALSSGSILSIKNGVWAK----DGHHFVFVRRVTDD-TKLDDIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPI------DKNSTTLNIPI 232
T D+++ +I K A+ A D K L++V + I + T P
Sbjct: 175 IYTFDQQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPD 234
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + Y I + + + R E F+ I P+ + M L+A
Sbjct: 235 KLGAVSLRPTSLSISGLYHYISFLRETGQ----DVSRFELTFWRKIFQPVSVGVMMLLAL 290
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + GI GF+ Y + I+ + + ALIP +L I +
Sbjct: 291 SFIFGSLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIW 350
Query: 353 LILLQKED 360
+L +K D
Sbjct: 351 WLLSRKRD 358
>gi|254282266|ref|ZP_04957234.1| permease YjgP/YjgQ family protein [gamma proteobacterium NOR51-B]
gi|219678469|gb|EED34818.1| permease YjgP/YjgQ family protein [gamma proteobacterium NOR51-B]
Length = 353
Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats.
Identities = 66/359 (18%), Positives = 126/359 (35%), Gaps = 11/359 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G + RY + L T L + L + + + + + Y +P
Sbjct: 2 GKIDRYIGRAILGGTFAVLGVLVGLDALSTIVDEAEDLSDR--YGFIDMMSYVGLTLPRR 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I + +PF L+ +V L +SELV+ R+ G+SI QL + ++L + +V +
Sbjct: 60 IHEFMPFAALIGALVGLGRLAGSSELVVVRSAGVSIGQLAISVMKPALLAAVVGFVVGDF 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA S E++ I + + + W + FI + + +
Sbjct: 120 IAPSSEQLAITQRALAQRSESTVSARHGSWNRDGG----TFIHVSAV-QRGGVAYGLSLF 174
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI---DKNSTTLNIPIKMDGFQK 239
+ D+ ++ +A+ D L++VV Q + N I D
Sbjct: 175 SFDEDKHLVRSLNAERGTYRGDHWLLEEVVLTQLESEKTTVSQYLTWRWNTQITPDLLVL 234
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S +++ F + + E F+ + PL + + L+A S
Sbjct: 235 EVVEPESLPVFKLWPWAKFLEQQGL-TATDIELAFWRKVTQPLAIAGLVLVAMSFIFGPL 293
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + G+ G M L PV AA+ P++ I +L ++
Sbjct: 294 REGSMGARIFAGVIVGVMFRISQDFFGPASVLFGLPPVLAAITPILFCWLAGIWLLNRR 352
>gi|212636934|ref|YP_002313459.1| permease YjgP/YjgQ [Shewanella piezotolerans WP3]
gi|212558418|gb|ACJ30872.1| Permease YjgP/YjgQ [Shewanella piezotolerans WP3]
Length = 352
Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 126/358 (35%), Gaps = 16/358 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y K + ++ LL L +I + +G YS+ + +P I
Sbjct: 3 ILDLYIAKVLISSSSLSLLILTGLSGIIKWVDQLRLVGR-GTYSMMDAGIYVLFLIPRDI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ + L SELV+ ++ G+S Q+ + +I L I +L+ +
Sbjct: 62 EMFFPMAVLLGALTGMGMLASNSELVVMQSSGLSRLQIALSAMKTAIPLMILVMLLSEYV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E ++ + G +S W + D+F+ ++ N+ D T
Sbjct: 122 APVAEVRAKEIQRTQISGGSLIESTRGVWAK----DGDLFVNIGGVVDSNN-LRDITLYE 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN------IPIKMDGF 237
D + A+ A +L V + + + P K+
Sbjct: 177 FDDTTNLTSTVHAETAKYMGKFWQLYDVRRTSLKSEQVVLTNLDEDKWISSLTPEKLSVV 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + + + + +++ R E + ++ P+ + M L+A S
Sbjct: 237 SVKPESLSIEGLLDYLDYLKNNKQASA----RYELALWRKLMQPVTIAVMMLVALSFVFG 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R+ V G+ +GF Y + L +A +P ++ + ++ +
Sbjct: 293 PLRTVTMGARVLLGVVAGFSFYICSEVFGPLSIVYGLPAFISAGMPALIFSAGALYYI 350
>gi|193215417|ref|YP_001996616.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
35110]
gi|193088894|gb|ACF14169.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
35110]
Length = 360
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 67/361 (18%), Positives = 141/361 (39%), Gaps = 11/361 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY F+ Y T + +L + L ++DL E + + N + A P I
Sbjct: 2 KILDRYIFREYFSTLGFAILAFVSLFILVDLIEKVDDFLDK-NVELKLIAQYYLYFTPEI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I+ I+P TL+ ++ V L + +EL +A GIS+++LL PF + ++G +
Sbjct: 61 IKLIVPISTLLASLFVTGKLAKQTELTAMKAGGISLYRLLLPFFLVGAIIGGIDFYLSGW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ K + + S + NP + + + ++ +
Sbjct: 121 VVPETTKFKEQFDATYLGKTKWKSSSFSNIELLENPNR--IVRIGYFNKDTRTCQNVSLQ 178
Query: 183 TIDKKNKIIHRKDADLAIIYN--DKVKLKKV--VEYQYGRIPIDKNST--TLNIPIKMDG 236
+K+ ++ R DA + + ++Q G+ + T+ +
Sbjct: 179 NY-QKSHMLWRIDAAKMTYDTSLSRWIFYQAYYRDFQSGKEQFSYAAKIDTVQLVFSAKE 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
++ + S E K + ++ + A +++ I P+ + + LI +S
Sbjct: 238 LEENNAALDQMSLDEHWKYIEARRRAGFSNVDEALVKYHIKISFPIACLIVILIGVPLSA 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
E RS + + GF+ + + G G + P+ +A IP L +++ ++ L
Sbjct: 298 EKKRSG-IALEAGISLLIGFLYIILQKTFSTLGYKGAVDPILSAWIPNFLFLTVGLVFLF 356
Query: 357 Q 357
+
Sbjct: 357 K 357
>gi|307294586|ref|ZP_07574428.1| permease YjgP/YjgQ family protein [Sphingobium chlorophenolicum
L-1]
gi|306879060|gb|EFN10278.1| permease YjgP/YjgQ family protein [Sphingobium chlorophenolicum
L-1]
Length = 367
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 55/357 (15%), Positives = 123/357 (34%), Gaps = 8/357 (2%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + +L T L + ++ +DL + ++ A R P I+ + +
Sbjct: 15 YMARLFLTRTFAVLAMLVAVLQTLDLLGESGDILAYAGNGDAQLWHYVALRAPQIVARFL 74
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS- 126
PF L+ +++ +LN+ SE++ +A G+S Q+L P + ++ + + + I
Sbjct: 75 PFSVLLGTLIMLASLNQNSEIISMKAAGLSAHQILAPLLAAALGVALISYAFNERIVARS 134
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ + + PW++ N I A +
Sbjct: 135 TARLSAWQAVDYGPLPPETGVKASPWVRDGNNLVTAAIVAGR--GTAVQLRKVEIFNRVN 192
Query: 187 KNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFSEQ 243
+ A L++ ++ R + + I+ D F
Sbjct: 193 NM-LTTIVQAPKGHYDPVAKSWVLEEARQFDVARGTERQVGTVRFGRDIRPDQFTLAKVD 251
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ +F ++ + + E + + PL + M ++ + + +RS Q
Sbjct: 252 PDALTFSQLQAAIGDLRDAG-RPTSELEGSLWHKLSGPLSALLMPILGSVAAFGLARSGQ 310
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ G+ GF + + G G P AA P +L + + +L + E+
Sbjct: 311 LFVRAVMGMALGFAYFVADNFSLAMGNLGAYPPFLAAWAPFLLFLLVGETVLFRTEE 367
>gi|325136762|gb|EGC59362.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M0579]
Length = 356
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 60/364 (16%), Positives = 143/364 (39%), Gaps = 18/364 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ ++ L SEL + +A G+S +LL + I TV +
Sbjct: 61 AYELMPLAVLIGGLLSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + ++ NG + W++ N I +++LP+ H
Sbjct: 121 VAPTLSQKAENIKAAA-INGKISTGNTGLWLKEKN----SIINVREMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKM-D 235
+ KN++ +AD A++ + +LK + G ++ + + +++ + D
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMD 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+Q + I+ + +++ + ++ +V P M L+A + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHLQNNSQ----NTRIYAIAWWRKLVYPAAAWVMALVAFAFT 290
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + + GI G + + + + + P A +P I L++ ++
Sbjct: 291 PQTTRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGIPPFLAGALPTIAFALLAVWLI 350
Query: 356 LQKE 359
++E
Sbjct: 351 RKQE 354
>gi|325132744|gb|EGC55427.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M6190]
gi|325138629|gb|EGC61188.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
ES14902]
Length = 356
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 61/364 (16%), Positives = 142/364 (39%), Gaps = 18/364 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ +V L SEL + +A G+S +LL + I TV +
Sbjct: 61 AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + ++ NG + W++ N I +++LP+ H
Sbjct: 121 VAPTLSQKAENIKAAA-INGKISTGNTGIWLKEKN----SIINVREMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKM-D 235
+ KN++ +AD A++ + +LK + G ++ + + +++ + D
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMD 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+Q + I+ + +++ + ++ +V P M L+A + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHLQNNSQ----NTRIYAIAWWRKLVYPAAAWVMALVAFAFT 290
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + + GI G + + + + P A +P I L++ ++
Sbjct: 291 PQTTRHGNMGLKLFGGICLGLLFHLTGRFFGFTSQLYGIPPFLAGALPTIAFALLAVWLI 350
Query: 356 LQKE 359
++E
Sbjct: 351 RKQE 354
>gi|241760405|ref|ZP_04758500.1| permease YjgP/YjgQ [Neisseria flavescens SK114]
gi|241319283|gb|EER55761.1| permease YjgP/YjgQ [Neisseria flavescens SK114]
Length = 356
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 62/364 (17%), Positives = 145/364 (39%), Gaps = 18/364 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y+ ++ ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGK-GSYNSAKLGQYVLMQMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ ++ L SEL + +A G+S +LL ++ I TV +
Sbjct: 61 AYELMPLAVLIGGLISLSQLASGSELTVIKASGMSTKKLLLILSQFGLIFAIATVALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + ++ NG + W++ N I +++LP+ H
Sbjct: 121 VAPTLSQKAENIKAAA-INGKISTGNTGLWLKEKN----SIINVREMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPID-KNSTTLNIPIK-----MD 235
+ KN++ +A+ A++ + +LK + G ++ + N PI MD
Sbjct: 175 QRNDKNELTQAAEAESAVLNPDGSWQLKNIRRSILGEDKVEVSTAAEENWPISVKRNLMD 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+Q + I + +N+ + ++ +V P+ M L+A + +
Sbjct: 235 VLLVKPDQMSVGELTTYIDHLEKNNQ----NTQVYAIAWWRKLVYPVAAWVMALVAFAFT 290
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + + GI G + + + + + P A +P +L L++ ++
Sbjct: 291 PQTTRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPTVLFALLAVYLI 350
Query: 356 LQKE 359
++E
Sbjct: 351 RRQE 354
>gi|258645769|ref|ZP_05733238.1| membrane protein, YjgP/YjgQ family [Dialister invisus DSM 15470]
gi|260403140|gb|EEW96687.1| membrane protein, YjgP/YjgQ family [Dialister invisus DSM 15470]
Length = 361
Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats.
Identities = 60/362 (16%), Positives = 136/362 (37%), Gaps = 14/362 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K +L L+ + + D S + + +P II
Sbjct: 3 ILDKYILKEFLGPFLFGVAAFTAIFLGADTLLKIADYVTKYGASSTAALKIFILALPRII 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ L+ +SEL++ R G S +L+ P + + L+ + V +
Sbjct: 63 VYTFPMAVLLGALMATSRLSGSSELIVMRTSGQSFSRLVMPIFILTFLISLCAVAFNEYV 122
Query: 124 ATSGEKIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ +I + K N + +D + + N + + A++ PEN E+ T
Sbjct: 123 VPWTNRKYEQVINIEIKRNLNPGVTDHVILRDVQNGKIAHLLYARRYNPENKKLENITIQ 182
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS-------TTLNIPIKMD 235
+ +I ++A A+ + K ++ Y G I + P +
Sbjct: 183 EF-QNEAVIRVENAPNAVWKDGKWFMENGTIYDLGEDGISRTMRFKNQFIPYGQSPETIQ 241
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
K ++ R + + ++ + + +P L+ A +
Sbjct: 242 KEHKDYDEMTIRELFT----ARKAYEAAHEDATAIVMEIHRRFSLPFASFVFGLVGAPLG 297
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ RS+ I + F+ Y ++T +++ GK ++ VAA +P ++ + ++ ++
Sbjct: 298 VQRERSSSS-IGFGLSVVIIFVYYAVMTFLEALGKGHVISAVAAVWLPNLIALICAVYLI 356
Query: 356 LQ 357
+
Sbjct: 357 KR 358
>gi|29654138|ref|NP_819830.1| putative permease [Coxiella burnetii RSA 493]
gi|161831591|ref|YP_001596891.1| putative permease [Coxiella burnetii RSA 331]
gi|29541404|gb|AAO90344.1| hypothetical membrane spanning protein [Coxiella burnetii RSA 493]
gi|161763458|gb|ABX79100.1| putative permease [Coxiella burnetii RSA 331]
Length = 355
Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats.
Identities = 65/359 (18%), Positives = 134/359 (37%), Gaps = 11/359 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + T +L + + ++ +Q+G + +Y + + + T++P
Sbjct: 2 PLLNRYIRNAIITATALVMLVLLGIEMFMEFIGQLSQIGSV-HYGLGQAFLYVLTQLPSD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q+ P + ++ L +SEL++ R G+SI + V ++L+ + +
Sbjct: 61 LYQLFPMAGFLGCLIGLGRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVVMTFIGEV 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA E G + K+ W+ FI + +N I + +
Sbjct: 121 IAPQLEASGEETKLTELSKAVGYKALGDVWL----HGAQSFIHIGSVDAKNKI-SEVSQF 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQK 239
I+ K++++ A L V + Q+ + L I D Q+
Sbjct: 176 FINNKHQLLSAVYAPKGEYVKGHWILYNVKQTQFTPNRTTEKKIAKFPLTIVFNPDHLQQ 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ +S + + + ++ + R F+ + PL V M +
Sbjct: 236 GRKMVDRQSIVGLYHTIRYHQQAGL-QTSRYVFAFWQRFIQPLTTVVMICLGVPFIFGSL 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + GI GF Y + F + P+ AAL+P +L ++ +ILL+
Sbjct: 295 RQASMGLRILTGIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVLF-AVGCVILLRY 352
>gi|226943299|ref|YP_002798372.1| YjgP/YjgQ family permease [Azotobacter vinelandii DJ]
gi|226718226|gb|ACO77397.1| permease YjgP/YjgQ family [Azotobacter vinelandii DJ]
Length = 353
Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats.
Identities = 63/361 (17%), Positives = 130/361 (36%), Gaps = 17/361 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G L RY + L L + L + + + +Y ++ A VP
Sbjct: 2 GKLDRYIGASVSLSILAVLGVLVGLALLFSFVDELGDVQ--GDYDLAAAAWYVFLTVPQR 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ ++ +L +SEL + RA GIS+ +++ + ++L + L+
Sbjct: 60 TYEMLPMGALIGCLIGLGSLASSSELTVIRASGISLGRIVWAVMKPMLVLMVLGGLLGEY 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A E + G+ Q + W + N F+ + P + T
Sbjct: 120 LAPWAENKAEAHRSLAQGGGEAQTAKHGLWHRQGNE----FVHINAVQPGG-VLYGVTRY 174
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID------KNSTTLNIPIKMDG 236
D + ++ A A +L+ V ++ + + L P +
Sbjct: 175 RFDDQRHMLWSSFARKAEFRGGNWQLEDVTTTRFLERSTEVAKAATEQWDILLSPQLLGT 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E + + I ++ +N R F+ ++ PL+ A+ L+A S
Sbjct: 235 VVMDPEALSVTGLWHYIHYLAEQE----LNNARYWLAFWGKVLQPLVTAALVLMAISFIF 290
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + G+ +GF+ ++ + P+ A L+P L L + +L
Sbjct: 291 GPLRSVTLGQRLFTGVLAGFVFRMFQDLLGPSSQVFGFSPLLAVLLPAGLCALLGVYLLR 350
Query: 357 Q 357
+
Sbjct: 351 R 351
>gi|319637673|ref|ZP_07992439.1| hypothetical protein HMPREF0604_00062 [Neisseria mucosa C102]
gi|317400828|gb|EFV81483.1| hypothetical protein HMPREF0604_00062 [Neisseria mucosa C102]
Length = 356
Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats.
Identities = 62/364 (17%), Positives = 145/364 (39%), Gaps = 18/364 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y+ ++ ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGK-GSYNGAKLGQYVLMQMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ ++ L SEL + +A G+S +LL ++ I TV +
Sbjct: 61 AYELMPLAVLIGGLISLSQLASGSELTVIKASGMSTKKLLLILSQFGLIFAIATVALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + ++ NG + W++ N I +++LP+ H
Sbjct: 121 VAPTLSQKAENIKAAA-INGKISTGNTGLWLKEKN----SIINVREMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPID-KNSTTLNIPIK-----MD 235
+ KN++ +A+ A++ + +LK + G ++ + N PI MD
Sbjct: 175 QRNDKNELTQAAEAESAVLNPDGSWQLKNIRRSILGEDKVEVSTAAEENWPISVKRNLMD 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+Q + I + +N+ + ++ +V P+ M L+A + +
Sbjct: 235 VLLVKPDQMSVGELTTYIDHLEKNNQ----NTQVYAIAWWRKLVYPVAAWVMALVAFAFT 290
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + + GI G + + + + + P A +P +L L++ ++
Sbjct: 291 PQTTRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPTVLFALLAVYLI 350
Query: 356 LQKE 359
++E
Sbjct: 351 RRQE 354
>gi|145629200|ref|ZP_01784999.1| hypothetical protein CGSHi22121_10370 [Haemophilus influenzae
22.1-21]
gi|145639140|ref|ZP_01794747.1| hypothetical protein CGSHiII_03859 [Haemophilus influenzae PittII]
gi|144978703|gb|EDJ88426.1| hypothetical protein CGSHi22121_10370 [Haemophilus influenzae
22.1-21]
gi|145271702|gb|EDK11612.1| hypothetical protein CGSHiII_03859 [Haemophilus influenzae PittII]
gi|309750721|gb|ADO80705.1| Lipopolysaccharide export permease, LptG [Haemophilus influenzae
R2866]
Length = 358
Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats.
Identities = 77/368 (20%), Positives = 138/368 (37%), Gaps = 18/368 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D + G W + F+ +++ + +D
Sbjct: 120 EWGIPQTEQFARDTRAKALSGGSILSIKNGVWAK----DGHHFVFVRRVTDD-TKLDDIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPI------DKNSTTLNIPI 232
T D+++ +I K A+ A D K L++V + I + T P
Sbjct: 175 IYTFDQQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPD 234
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + Y I + + + R E F+ I P+ + M L+A
Sbjct: 235 KLGAVSLRPTSLSISGLYHYISFLRETGQ----DVSRFELTFWRKIFQPVSVGVMMLLAL 290
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + GI GF+ Y + I+ + + ALIP +L I +
Sbjct: 291 SFIFGSLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIW 350
Query: 353 LILLQKED 360
+L +K D
Sbjct: 351 WLLSRKRD 358
>gi|260582801|ref|ZP_05850587.1| permease [Haemophilus influenzae NT127]
gi|260094127|gb|EEW78029.1| permease [Haemophilus influenzae NT127]
Length = 358
Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 80/365 (21%), Positives = 143/365 (39%), Gaps = 12/365 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + F+ +++ + +D
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKNGVWAK----DGHHFVFVRRVTDD-TKLDDIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYND--KVKLKKV---VEYQYGRIPIDKNSTTLNIPIKMD 235
T D+++ +I K A+ A D K L++V + I + S T + D
Sbjct: 175 IYTFDQQHNLIKLKHANQASYSEDEAKWTLRQVNHSTIMKDEIITTNHLSETWETSLTPD 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
S + S S + +SF ++ R E F+ I P+ + M L+A S
Sbjct: 235 KLGAVSLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFI 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS + GI GF+ Y + I+ + + ALIP +L I + +L
Sbjct: 294 FGSLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLL 353
Query: 356 LQKED 360
+K D
Sbjct: 354 SRKRD 358
>gi|218768539|ref|YP_002343051.1| hypothetical protein NMA1760 [Neisseria meningitidis Z2491]
gi|121052547|emb|CAM08887.1| conserved hypothetical integral membrane protein [Neisseria
meningitidis Z2491]
gi|319410788|emb|CBY91173.1| conserved hypothetical integral membrane protein [Neisseria
meningitidis WUE 2594]
gi|325128630|gb|EGC51499.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis N1568]
gi|325144869|gb|EGC67157.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
M01-240013]
Length = 356
Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 61/364 (16%), Positives = 143/364 (39%), Gaps = 18/364 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ +V L SEL + +A G+S +LL + I TV +
Sbjct: 61 AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + ++ NG + W++ N I +++LP+ H
Sbjct: 121 VAPTLSQKAENIKAAA-INGKISTGNTGLWLKEKN----SIINVREMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKM-D 235
+ KN++ +AD A++ + +LK + G ++ + + +++ + D
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMD 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+Q + I+ + +++ + ++ +V P M L+A + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHLQNNSQ----NTRIYAIAWWRKLVYPAAAWVMALVAFAFT 290
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + + GI G + + + + + P A +P I L++ ++
Sbjct: 291 PQTTRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGIPPFLAGALPTIAFALLAVWLI 350
Query: 356 LQKE 359
++E
Sbjct: 351 RKQE 354
>gi|325198681|gb|ADY94137.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis G2136]
Length = 356
Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 61/364 (16%), Positives = 142/364 (39%), Gaps = 18/364 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ +V L SEL + +A G+S +LL + I TV +
Sbjct: 61 AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + ++ NG + W++ N I +++LP+ H
Sbjct: 121 VAPTLSQKAENIKAAA-INGKISTGNTDIWLKEKN----SIINVREMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKM-D 235
+ KN++ +AD A++ + +LK + G ++ + + +++ + D
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMD 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+Q + I+ + +++ + ++ +V P M L+A + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHLQNNSQ----NTRIYAIAWWRKLVYPAAAWVMALVAFAFT 290
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + + GI G + + + + P A +P I L++ ++
Sbjct: 291 PQTTRHGNMGLKLFGGICLGLLFHLAGRFFGFTSQLYGIPPFLAGALPTIAFALLAVWLI 350
Query: 356 LQKE 359
++E
Sbjct: 351 RKQE 354
>gi|120599781|ref|YP_964355.1| permease YjgP/YjgQ family protein [Shewanella sp. W3-18-1]
gi|146292283|ref|YP_001182707.1| permease YjgP/YjgQ family protein [Shewanella putrefaciens CN-32]
gi|120559874|gb|ABM25801.1| permease YjgP/YjgQ family protein [Shewanella sp. W3-18-1]
gi|145563973|gb|ABP74908.1| permease YjgP/YjgQ family protein [Shewanella putrefaciens CN-32]
gi|319425583|gb|ADV53657.1| inner membrane component of lipopolysaccharide transporter, LptG
[Shewanella putrefaciens 200]
Length = 352
Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 64/358 (17%), Positives = 125/358 (34%), Gaps = 10/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y + L T+ LL L +I + +G Y++ + +P
Sbjct: 2 KILDLYIARVILSTSALCLLVLTGLSGIIKWVDQLRLVGR-GTYTMMDAGIYVLFLIPRD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I+ P L+ ++ L SELV+ + G+S Q+ + ++ L + + +
Sbjct: 61 IEMFFPMAVLLGALIGMGMLASNSELVVMQVSGLSRLQITLSAMKTAVPLMLMVMALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A E+ +L G KS W + D+F+ ++ + T
Sbjct: 121 GAPVAEQKANELQAIKLSGGSLIKSHRGIWAK----DGDLFVNIGEV-ENITKLNNITLY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI---PIKMDGFQK 239
+ + K+ A+ A+ D +L V + +I + D
Sbjct: 176 KFNSELKLTKVVHAERAVFTRDSWRLFDVKRTDLTYDQVTLEHLEEDIWQSSLTPDKLSV 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + + S ++ + + K+N R E ++ P+ + M L+A S
Sbjct: 236 VSVKPEALSIQGLLGYLDYL-KTNSQDPSRYELALGRKLMQPVTVGVMMLVALSFVFGPL 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ V G+ +GF Y I L A+ P +L ++ + +
Sbjct: 295 RTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAMAPSLLFTGIAFYFIRR 352
>gi|291614864|ref|YP_003525021.1| permease YjgP/YjgQ family protein [Sideroxydans lithotrophicus
ES-1]
gi|291584976|gb|ADE12634.1| permease YjgP/YjgQ family protein [Sideroxydans lithotrophicus
ES-1]
Length = 358
Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 70/365 (19%), Positives = 142/365 (38%), Gaps = 20/365 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + + ++L ++DL N MG +Y + + +P I
Sbjct: 3 LLTRYLRREIYASVALVFAALIMLFALLDLVNELNSMGR-GDYRLGYVLLFVTLTIPGHI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ P L+ I + +SEL + R+ G+S+ Q++ V + L + L I
Sbjct: 62 YELFPVAVLIGTIFALVQMAASSELTVYRSSGVSLKQMIVMLVKIGLPLVVLCFLFGEVI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKS-DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A E++ +L + ++ K W + + FI + +LP+ + D +
Sbjct: 122 APPSERMAQELRMKAQNLKVSVKEFRSGVWAK----DERSFINVRSMLPDTSLL-DVSIY 176
Query: 183 TIDKKNKIIHRKDADLA-IIYNDKVKLKKVVEY-------QYGRIPIDKNSTTLNIPIKM 234
D + A+ A + D+ +L V + P + T+LN P +
Sbjct: 177 EFDATYHLRSITSAEHASYLDEDRWQLDGVRQTLFSKQGATTDNRPRAEWHTSLN-PDIL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
EQ ++ + Y+ + +++ R E + +V PL ++ M L+A
Sbjct: 236 SVLLVVPEQMSAWNLYQYTMHLRENHQK----TSRYEIAMWNKLVYPLAVLVMMLLALPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S R + GI G + + + + G P+ +A L ++L++ +
Sbjct: 292 SAYQRREGGISGKIFMGIVLGLSFHFVGRLFANVGALNDWSPLLSATAMSWLFLALAMGM 351
Query: 355 LLQKE 359
L + E
Sbjct: 352 LWRTE 356
>gi|161870426|ref|YP_001599598.1| hypothetical protein NMCC_1474 [Neisseria meningitidis 053442]
gi|254805326|ref|YP_003083547.1| putative permease [Neisseria meningitidis alpha14]
gi|161595979|gb|ABX73639.1| conserved hypothetical integral membrane protein [Neisseria
meningitidis 053442]
gi|254668868|emb|CBA06970.1| putative permease [Neisseria meningitidis alpha14]
Length = 356
Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 61/364 (16%), Positives = 143/364 (39%), Gaps = 18/364 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ +V L SEL + +A G+S +LL + I TV +
Sbjct: 61 AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + ++ NG + W++ N I +++LP+ H
Sbjct: 121 VAPTLSQKAENIKAAA-INGKISTGNTGIWLKEKN----SIINVREMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKM-D 235
+ KN++ +AD A++ + +LK + G ++ + + +++ + D
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMD 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+Q + I+ + +++ + ++ +V P M L+A + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHLQNNSQ----NTRIYAIAWWRKLVYPAAAWVMALVAFAFT 290
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + + GI G + + + + + P A +P I L++ ++
Sbjct: 291 PQTTRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGIPPFLAGALPTIAFALLAVWLI 350
Query: 356 LQKE 359
++E
Sbjct: 351 RKQE 354
>gi|15677421|ref|NP_274577.1| hypothetical protein NMB1571 [Neisseria meningitidis MC58]
gi|304387020|ref|ZP_07369275.1| YjgP/YjgQ family permease [Neisseria meningitidis ATCC 13091]
gi|7226818|gb|AAF41924.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|304338892|gb|EFM04991.1| YjgP/YjgQ family permease [Neisseria meningitidis ATCC 13091]
gi|308389705|gb|ADO32025.1| hypothetical protein NMBB_1800 [Neisseria meningitidis alpha710]
gi|316983819|gb|EFV62799.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|325130630|gb|EGC53373.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
OX99.30304]
gi|325134626|gb|EGC57266.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M13399]
gi|325140779|gb|EGC63293.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis CU385]
gi|325199830|gb|ADY95285.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis H44/76]
gi|325201753|gb|ADY97207.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
M01-240149]
gi|325204535|gb|ADY99988.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
M01-240355]
gi|325205694|gb|ADZ01147.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
M04-240196]
gi|325208503|gb|ADZ03955.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
NZ-05/33]
Length = 356
Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 62/364 (17%), Positives = 143/364 (39%), Gaps = 18/364 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++IP L+ +V L SEL + +A G+S +LL + I TV +
Sbjct: 61 AYELIPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + ++ NG + W++ N I +++LP+ H
Sbjct: 121 VAPTLSQKAENIKAAA-INGKISTGNTGLWLKEKN----SIINVREMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKM-D 235
+ KN++ +AD A++ + +LK + G ++ + + +++ + D
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMD 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+Q + I+ + +++ + ++ +V P M L+A + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHLQNNSQ----NTRIYAIAWWRKLVYPAAAWVMALVAFAFT 290
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + + GI G + + + + + P A +P I L++ ++
Sbjct: 291 PQTTRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGIPPFLAGALPTIAFALLAVWLI 350
Query: 356 LQKE 359
++E
Sbjct: 351 RKQE 354
>gi|330938933|gb|EGH42432.1| permease YjgP/YjgQ [Pseudomonas syringae pv. pisi str. 1704B]
Length = 302
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 63/311 (20%), Positives = 111/311 (35%), Gaps = 19/311 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L L L + LV + + + + Y+++ P +
Sbjct: 4 LDRYIGKSVLLAILAVLGIILGLVSMFAFIDEMRDISD--TYTLTDALSFVMLTAPRRVY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ L +SEL I RA G+SI +++ + +LL I VLV +A
Sbjct: 62 DTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMIAGVLVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + +GD Q + W + + FI + P + T
Sbjct: 122 PYAENQAQAARSLAQGSGDAQSARHGLWHRQGDE----FIHINTVQPNGLML-GVTRYHF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNSTTLNIPIKMDGF 237
D + ++ A A D +LK V + P+++ L+ P +
Sbjct: 177 DDQRHMLTSSFAKEANFKTDYWELKDVTTTHFNDGSTEVVNTPVERWDVALS-PQLLSTV 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + + ++ SN R F+ ++ P + VA+ L+A S
Sbjct: 236 IMPPESLSISGLWSYAHYLADQGLSNG----RYWLAFWTKVLQPAVTVALVLMAISFIFG 291
Query: 298 FSRSNQPRIIV 308
RS V
Sbjct: 292 PLRSVTLGQRV 302
>gi|16273590|ref|NP_439845.1| hypothetical protein HI1703 [Haemophilus influenzae Rd KW20]
gi|260581044|ref|ZP_05848866.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|1176473|sp|P45332|LPTG_HAEIN RecName: Full=Lipopolysaccharide export system permease protein
lptG
gi|1574557|gb|AAC23349.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|260092284|gb|EEW76225.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
Length = 358
Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats.
Identities = 80/365 (21%), Positives = 142/365 (38%), Gaps = 12/365 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D + G W + F+ +++ + +D
Sbjct: 120 EWGIPQTEQFARDTRAKALSGGSILSIKNGVWAK----DGHHFVFVRRVTDD-TKLDDIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYND--KVKLKKV---VEYQYGRIPIDKNSTTLNIPIKMD 235
T D+++ +I K A+ A D K L++V + I + S T + D
Sbjct: 175 IYTFDQQHNLIKLKHANQASYSEDEAKWTLRQVNHSTIMKDEIITTNHLSETWETSLTPD 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
S + S S + +SF ++ R E F+ I P+ + M L+A S
Sbjct: 235 KLGAVSLRPTSLSISGLYHYISFLRETGQ-DVSRFELTFWRKIFQPVSVGVMMLLALSFI 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS + GI GF+ Y + I+ + + ALIP +L I + +L
Sbjct: 294 FGSLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLL 353
Query: 356 LQKED 360
+K D
Sbjct: 354 SRKRD 358
>gi|319776037|ref|YP_004138525.1| inner membrane protein [Haemophilus influenzae F3047]
gi|329123195|ref|ZP_08251764.1| YjgP/YjgQ family membrane protein [Haemophilus aegyptius ATCC
11116]
gi|317450628|emb|CBY86848.1| conserved inner membrane protein [Haemophilus influenzae F3047]
gi|327471540|gb|EGF16984.1| YjgP/YjgQ family membrane protein [Haemophilus aegyptius ATCC
11116]
Length = 358
Score = 196 bits (500), Expect = 3e-48, Method: Composition-based stats.
Identities = 76/368 (20%), Positives = 139/368 (37%), Gaps = 18/368 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGAIFSTLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FT+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + F+ +++ + +D
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKNGVWAK----DGHHFVFVRRVTDD-TKLDDIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPI------DKNSTTLNIPI 232
T ++++ +I K A+ A D K L++V + I + T P
Sbjct: 175 IYTFEQQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPD 234
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + Y I + + + R E F+ I P+ + M L+A
Sbjct: 235 KLGAVSLRPTSLSISGLYHYISFLRETGQ----DVSRFELTFWRKIFQPVSVGVMMLLAL 290
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + GI GF+ Y + I+ + + ALIP +L I +
Sbjct: 291 SFIFGSLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIW 350
Query: 353 LILLQKED 360
+L +K D
Sbjct: 351 WLLSRKRD 358
>gi|103487658|ref|YP_617219.1| permease YjgP/YjgQ [Sphingopyxis alaskensis RB2256]
gi|98977735|gb|ABF53886.1| permease YjgP/YjgQ [Sphingopyxis alaskensis RB2256]
Length = 366
Score = 196 bits (500), Expect = 3e-48, Method: Composition-based stats.
Identities = 66/358 (18%), Positives = 131/358 (36%), Gaps = 11/358 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + +L T L ++++ +DL ++ +P S R+P II+ +
Sbjct: 15 YVGRLFLFRTFAILFALVLILQTLDLLGESGKILAVPGNGDSDVWRYVGMRMPQIIETFL 74
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS- 126
PF L+ I+ LN+ SE+V +A G+S Q+L P + ++L+ + I T
Sbjct: 75 PFSVLLGTILTMVTLNQNSEVVAMKAAGMSAHQVLAPLFLAALLVAGISFAFNERIVTRS 134
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--IWEDFTSITI 184
+G ++K W++ + I A+ + + T
Sbjct: 135 TAALGAWQKVEYKRVPVDSGVRSNIWVRDGDD----LINAETVETSGPAVVLRGVTIYER 190
Query: 185 DKKNKIIHRKDADLAI-IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP-IKMDGFQKFSE 242
+ + AD A + ++ + ++ T + P ++ D F
Sbjct: 191 TR-GVLSSMLSADSARALPGGGWEMANARRFSRRSGTLEPLGTIVAAPNVRPDQFTLADV 249
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
F ++ + + + + I PL + M L+ A + +RS
Sbjct: 250 DGDELPFLKLKAAIDDLE-AAGRPVDALKGVLWHKISGPLSAILMPLLGAVAAFGLARSG 308
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ + G+ GF + + G G P AA P IL + +IL++ E+
Sbjct: 309 KLFVRAIIGMALGFAYFVADNFALAMGDLGAYSPFLAAWGPFILFALIGEMILIRTEE 366
>gi|77361337|ref|YP_340912.1| hypothetical protein PSHAa2421 [Pseudoalteromonas haloplanktis
TAC125]
gi|76876248|emb|CAI87470.1| putative membrane protein [Pseudoalteromonas haloplanktis TAC125]
Length = 355
Score = 196 bits (500), Expect = 3e-48, Method: Composition-based stats.
Identities = 51/365 (13%), Positives = 124/365 (33%), Gaps = 18/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y + L+TT + LL + + +I + +G +Y + + +P
Sbjct: 1 MMKTLDWYLGRSILQTTGFALLVLVGISTLIKFIDQLKSVGR-GSYDLMTAMLYTLYTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P L+ + L SELV+ A G+S Q+++ + ++ + + + +
Sbjct: 60 GDLVVFFPMAALIGGLTGLGALASNSELVVMHAAGMSRLQIISSVMKTAVFMALCMMALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ Q GD + W + + FI + +
Sbjct: 120 EWGVPEAQLQAKEMRNQAIHGGDVFNAQKGVWAK----DGNNFINIEDVDQNG-KLNGVH 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKV-------VEYQYGRIPIDKNSTTLNIPIK 233
D+ + A A+ + L+ V ++P + + L K
Sbjct: 175 MYHFDQSLSLTQITKAKDALSRENGWLLRGVNKVKISDELITTEQVPEEFYPSQL-TAEK 233
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ E + + + + +++ E + ++ P+ + M L+A S
Sbjct: 234 LGVVSVKPESLSFTGLWSYLDYLKQNDQ----DTSTYELALWRKLMQPISIAVMLLVALS 289
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R+ + G+ +G + + I + A++P I+ +
Sbjct: 290 FIFGPLRTVTMGARIIMGVVTGIVFHLTNEIFGPVVMVYQIPAFIGAVVPSIIFTGFAAY 349
Query: 354 ILLQK 358
++ ++
Sbjct: 350 LMNKR 354
>gi|212212730|ref|YP_002303666.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuG_Q212]
gi|212011140|gb|ACJ18521.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuG_Q212]
Length = 355
Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats.
Identities = 65/362 (17%), Positives = 132/362 (36%), Gaps = 17/362 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + T +L + + ++ +Q+G + +Y + + + T++P
Sbjct: 2 PLLNRYIRNAIITATALVMLVLLGIEMFMEFIGQLSQIGSV-HYGLGQAFLYVLTQLPSD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q+ P + ++ L +SEL++ R G+SI + V ++L+ + +
Sbjct: 61 LYQLFPMAGFLGCLIGLGRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVVMTFIGEV 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA E G + K+ W+ FI + +N I + +
Sbjct: 121 IAPQLEASGEETKLTALSKAVGYKALGDVWL----HGAQSFIHIGSVDAKNKI-SEVSQF 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS------TTLNIPIKMDG 236
I+ K++++ A L V + Q+ + T + P +
Sbjct: 176 FINNKHQLLSAVYAPKGEYVKGHWILYNVKQTQFTPNRTTEKKIAKFPLTIVFNPDHLQQ 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+K ++ + Y I+ + R F+ + PL V M +
Sbjct: 236 GRKMVDRQSIVGLYHTIRY----RQQAGLQTSRYVFAFWQRFIQPLTTVVMICLGVPFIF 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + GI GF Y + F + P+ AAL+P +L ++ +ILL
Sbjct: 292 GSLRQASMGWRILTGIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVLF-AVGCVILL 350
Query: 357 QK 358
+
Sbjct: 351 RY 352
>gi|254498610|ref|ZP_05111329.1| permease [Legionella drancourtii LLAP12]
gi|254352150|gb|EET10966.1| permease [Legionella drancourtii LLAP12]
Length = 354
Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats.
Identities = 65/357 (18%), Positives = 133/357 (37%), Gaps = 10/357 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K L + L + L + L + +G+L +Y I++ A ++P +
Sbjct: 3 ILDRYIAKTVLTSIGLVTLMLVGLQILFYLFDQLGDLGKL-DYGITQAAFFVLMQMPYQV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P +L+ ++ + SELV+ RA G+SI Q+ + S+LL ++ +
Sbjct: 62 YLFFPMASLLGCLIGLGAMANHSELVVMRASGMSILQITGAVLKASVLLIFLVTVLGETV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
D G ++ W++ N FI +ILP N + ++
Sbjct: 122 VPYLSHYANDYKTASVSGGQTIRTAKGFWLRHGND----FISVGRILPNN-VLQNIYQFR 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GRIPIDKNSTTLNIPIKMDGFQKF 240
D+++ + + A V + ++ + ++P+K
Sbjct: 177 FDEQHHLKLARLIREAKYSEQGWVAYNVQQTEFVVDHTRAQTFATLPWDVPVKPKILNIS 236
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + + +E+ + + +S+ + + + F I+ P + M ++A R
Sbjct: 237 SIEPDEMTLHELNRYIREQKRSHQ-NVHNYQFAFLQRIIQPFTTMVMMVLAIPFIFGPLR 295
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
S+ + G GF + + L AAL P L L + ++ +
Sbjct: 296 SSTMGSKLLVGAAVGFGFHILSRFFGPVSSVFQLPAGLAALGPTFLFALLGLYLMRR 352
>gi|226940337|ref|YP_002795411.1| permease YjgP/YjgQ [Laribacter hongkongensis HLHK9]
gi|226715264|gb|ACO74402.1| permease YjgP/YjgQ [Laribacter hongkongensis HLHK9]
Length = 357
Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats.
Identities = 69/361 (19%), Positives = 136/361 (37%), Gaps = 11/361 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY + +++ LL + L D+ +G YS S V+ A ++P
Sbjct: 2 KILTRYIGGNVIAASIFGLLALLSLFAFFDVLSELTDIGR-GGYSFSDVLVVVALKLPRH 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ +V L +SE + R G+S+ Q+ L + T +
Sbjct: 61 AFELMPLAVLIGTMVAMSLLAGSSEYAVMRTSGMSLGQVARILAGIGALFAVLTFVTGEF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A E+ Q W++ N FI +++LP+N +
Sbjct: 121 AAPWAEQASERTKLQSTGAVISGDFRSGAWIKDDNH----FINVREMLPDNTLL-GINIY 175
Query: 183 TIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGR---IPIDKNSTTLNIPIKMDGFQ 238
T DK +++ + A AI + +L+ + E + I D S ++ +
Sbjct: 176 TYDKNDRLTDVRYARRAIYQPDGSWQLEDIKETRIEANRTIARDLPSQRWESILQPELLS 235
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S ++ + + +N + R E + + PL + M L+A + +
Sbjct: 236 TLLVEPERMSVADLGRYIEHLA-TNRQNTLRYEIALWGKLFYPLACLTMALVALAFTPVN 294
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + GI G Y I + G P L+P ++ +++ L+++
Sbjct: 295 QRQSNLGSRIFVGILIGLAFYFINRLFGHLGLLYGWSPPLVTLLPTLIFLAVGTWFLVRQ 354
Query: 359 E 359
E
Sbjct: 355 E 355
>gi|261364966|ref|ZP_05977849.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
gi|288566764|gb|EFC88324.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
Length = 356
Score = 195 bits (497), Expect = 6e-48, Method: Composition-based stats.
Identities = 63/364 (17%), Positives = 141/364 (38%), Gaps = 18/364 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y+ + A ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGK-GSYNGATMAQYVLMQMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ +V L SEL + +A G+S +LL ++ + T +
Sbjct: 61 AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLVLSQFGLIFALATAALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA + ++ NG + W++ N I +++LP+ H
Sbjct: 121 IAPVLSQKAENIKSTA-INGKISTGNTGLWLKEKN----SIINVREMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAIIYN-DKVKLKKVVEYQYGRIPID-KNSTTLNIPIK-----MD 235
+ KN++ +A+ A++ N +LK + ++ + N PI MD
Sbjct: 175 ERNDKNELTQATEAESAVLNNDGSWQLKNIRRSTLSEDKVEVSTAAEENWPIAVKRNLMD 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+Q + I + +N+ + ++ +V P+ M L+A + +
Sbjct: 235 VLLVKPDQMSVGELTTYISHLENNNQ----NTQIYAIAWWRKLVYPVAAWVMALVAFAFT 290
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + + GI G + + + + + P A +P I L++ ++
Sbjct: 291 PQTTRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPTIAFALLAVWLI 350
Query: 356 LQKE 359
++E
Sbjct: 351 RRQE 354
>gi|121591646|ref|ZP_01678888.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|121546494|gb|EAX56709.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
Length = 338
Score = 195 bits (497), Expect = 7e-48, Method: Composition-based stats.
Identities = 66/349 (18%), Positives = 131/349 (37%), Gaps = 21/349 (6%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVV 78
L+ + L +I E ++GE +Y + + + +P ++ P L+ ++
Sbjct: 1 MVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIPRDVEMFFPMAALLGALIG 59
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
L +SELV+ +A G S + + +I L I L+ A +K+ D+
Sbjct: 60 LGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWGAPQAQKMARDMRAFA 119
Query: 139 KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADL 198
G W + +N FI K+ EN D+ K+ ++
Sbjct: 120 TSGGAIMSVRTGVWARDAND----FIFIAKV--ENEHLYGLNLWRFDENKKLSTVIFSEQ 173
Query: 199 -AIIYNDKVKLKKVV--------EYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
+ N++ +K V E +P + T+L P K+ E+ +
Sbjct: 174 VDYVANNEWLMKDAVLTRLVNDIEISKESLPEYRWRTSL-APDKLAVVTVKPEELSLTGL 232
Query: 250 YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVA 309
+ + + S + + R E + + P+ + M L+A S RS +
Sbjct: 233 SDYVHYLKASEQ----DSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVTMGARIL 288
Query: 310 YGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
G+ +GF Y L P+ AL P ++ +++++ +L +K
Sbjct: 289 SGVIAGFSFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 337
>gi|255066290|ref|ZP_05318145.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
gi|255049500|gb|EET44964.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
Length = 356
Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats.
Identities = 64/364 (17%), Positives = 142/364 (39%), Gaps = 18/364 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y+ + A ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGK-GSYNGATMAQYVLMQMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ +V L SEL + +A G+S +LL ++ I T +
Sbjct: 61 AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGLIFAIATAALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA + ++ + NG + W++ N I +++LP+ H
Sbjct: 121 IAPVLSQKAENI-KSAAINGKISTGNTGLWLKEKN----SIINVREMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAIIYN-DKVKLKKVVEYQYGRIPID-KNSTTLNIPIK-----MD 235
+ KN++ +A+ A++ N +LK + ++ + N PI MD
Sbjct: 175 VRNDKNELRQATEAESAVLNNDGSWQLKNIRRSTLSEDKVEVSTAAEENWPIAVKRNLMD 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+Q + I + +N+ + ++ +V P+ M L+A + +
Sbjct: 235 VLLVKPDQMSVGELTTYISHLENNNQ----NTQIYAIAWWRKLVYPVAAWVMALVAFAFT 290
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ +R + + GI G + + + + + P A +P I L++ ++
Sbjct: 291 PQTTRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPTIAFALLAVWLI 350
Query: 356 LQKE 359
++E
Sbjct: 351 RRQE 354
>gi|154707760|ref|YP_001424260.1| hypothetical membrane spanning protein [Coxiella burnetii Dugway
5J108-111]
gi|154357046|gb|ABS78508.1| hypothetical membrane spanning protein [Coxiella burnetii Dugway
5J108-111]
Length = 355
Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats.
Identities = 66/362 (18%), Positives = 133/362 (36%), Gaps = 17/362 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + T +L + + ++ +Q+G L +Y + + + T++P
Sbjct: 2 PLLNRYIRNAIITATALVMLVLLGIEMFMEFIGQLSQIG-LVHYGLGQAFLYVLTQLPSD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q+ P + ++ L +SEL++ R G+SI + V ++L+ + +
Sbjct: 61 LYQLFPMAGFLGCLIGLGRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVAMTFIGEV 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA E G + K+ W+ FI + +N I + +
Sbjct: 121 IAPQIEASGEETKLTALSKAVGYKALGDVWL----HGAQSFIHIGSVDAKNKI-SEVSQF 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS------TTLNIPIKMDG 236
I+ K++++ A L V + Q+ + T + P +
Sbjct: 176 FINNKHQLLSAVYAPKGEYVKGHWILYNVKQTQFTPNRTTEKKIAKFPLTIVFNPDHLQQ 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+K ++ + Y I+ + R F+ + PL V M +
Sbjct: 236 GRKMVDRQSIVGLYHTIRY----RQQAGLQTSRYVFAFWQRFIQPLTTVVMICLGVPFIF 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + GI GF Y + F + P+ AAL+P +L ++ +ILL
Sbjct: 292 GSLRQASMGLRILTGIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVLF-AVGCVILL 350
Query: 357 QK 358
+
Sbjct: 351 RY 352
>gi|119944177|ref|YP_941857.1| permease YjgP/YjgQ family protein [Psychromonas ingrahamii 37]
gi|119862781|gb|ABM02258.1| permease YjgP/YjgQ family protein [Psychromonas ingrahamii 37]
Length = 354
Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats.
Identities = 66/349 (18%), Positives = 126/349 (36%), Gaps = 16/349 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
GIL RY K T L + L +I E +G + +Y A ++P+
Sbjct: 2 GILDRYIGKTIFAATFLSLFVLIGLSSIIKFVEQMGSIG-VGSYDAWNAAYFVILKIPIE 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ ++ +L +SELV+ +A GIS ++ + +I + I +++
Sbjct: 61 LSVFFPMAALIGALIGLGSLANSSELVVMQAAGISKLRIAGAVLKTAIPMVIVVMVLTEF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ +K + K + + W++ D F+ +++ +N
Sbjct: 121 VVPITDKEAYSMRYMAKRGEVQVSNQYGVWVK----DADSFVSIERMNSKN-ELFHVQLY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN------STTLNIPIKMDG 236
D+ K+ H A A V + + + T P K++
Sbjct: 176 FFDENLKLDHAILARKAAFKEGSWFFGDVSQTNFLEDRTEVKRMSNYIWETKLTPKKLEV 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
++ + R Y I + + + R F+ V+P +V M L++ S
Sbjct: 236 ILGEPDKMSMRDIYNYIIYLENNEQ----DAKRFWLIFWRKAVLPFTIVVMMLLSVSFIF 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
RS + +GI +GF Y + F P+ AL+P
Sbjct: 292 GGLRSVTMGTRLIFGIAAGFTFYVSGELFGPFSLVFNWPPILGALLPSF 340
>gi|153209377|ref|ZP_01947372.1| putative permease [Coxiella burnetii 'MSU Goat Q177']
gi|165919052|ref|ZP_02219138.1| putative permease [Coxiella burnetii RSA 334]
gi|212218294|ref|YP_002305081.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuK_Q154]
gi|120575377|gb|EAX32001.1| putative permease [Coxiella burnetii 'MSU Goat Q177']
gi|165917247|gb|EDR35851.1| putative permease [Coxiella burnetii RSA 334]
gi|212012556|gb|ACJ19936.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuK_Q154]
Length = 355
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 64/362 (17%), Positives = 132/362 (36%), Gaps = 17/362 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + T +L + + ++ +Q+G + +Y + + + T++P
Sbjct: 2 PLLNRYIRNAIITATALVMLVLLGIEMFMEFIGQLSQIGSV-HYGLGQAFLYVLTQLPSD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q+ P + ++ L +SEL++ R G+SI + V ++L+ + +
Sbjct: 61 LYQLFPMAGFLGCLIGLGRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVAMTFIGEV 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA G + K+ W+ FI + +N I + +
Sbjct: 121 IAPQLGASGEETKLTALSKAVGYKALGDVWL----HGAQSFIHIGSVDAKNKI-SEVSQF 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS------TTLNIPIKMDG 236
I+ K++++ A L V + Q+ + T + P +
Sbjct: 176 FINNKHQLLSAVYAPKGEYVKGHWILYNVKQTQFTPNRTTEKKIAKFPLTIVFNPDHLQQ 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+K ++ + Y I+ + R F+ + PL V M +
Sbjct: 236 GRKMVDRQSIVGLYHTIRY----RQQAGLQTSRYVFAFWQRFIQPLTTVVMICLGVPFIF 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + GI GF Y + F + P+ AAL+P +L ++ +ILL
Sbjct: 292 GSLRQASMGLRILTGIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVLF-AVGCVILL 350
Query: 357 QK 358
+
Sbjct: 351 RY 352
>gi|319896845|ref|YP_004135040.1| inner membrane protein [Haemophilus influenzae F3031]
gi|317432349|emb|CBY80704.1| conserved inner membrane protein [Haemophilus influenzae F3031]
Length = 358
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 75/368 (20%), Positives = 136/368 (36%), Gaps = 18/368 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L LL + L +I E +G+ Y I + +P
Sbjct: 1 MMNTLDRYIGKSILGAIFATLLTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVAFTGLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELV+ ++ G S +++ + + L + T+++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVVMQSAGFSRFKIGIAVMKTASPLVLLTMMIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
E+ D+ + G W + F+ +++ + +D
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGSILSIKNGVWAK----DGHHFVFVRRVTDD-TKLDDIY 174
Query: 181 SITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPI------DKNSTTLNIPI 232
T ++++ +I K A+ A D K L++V + I + T P
Sbjct: 175 IYTFEQQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSETWETSLTPD 234
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ + Y I + + + R E F+ I P+ + M L+A
Sbjct: 235 KLGAVSLRPTSLSISGLYHYISFLRETGQ----DVSRFELTFWRKIFQPVSVGVMMLLAL 290
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS + GI GF+ Y + I+ + + ALIP +L I +
Sbjct: 291 SFIFGSLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIW 350
Query: 353 LILLQKED 360
+L +K D
Sbjct: 351 WLLSRKRD 358
>gi|56479503|ref|YP_161092.1| hypothetical protein ebA7171 [Aromatoleum aromaticum EbN1]
gi|56315546|emb|CAI10191.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 359
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 60/367 (16%), Positives = 127/367 (34%), Gaps = 18/367 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY + T LL + L D + +G+ Y + + +P
Sbjct: 1 MNRVLTRYLAREIFGATAMVLLAFLGLFVFFDFINELDVVGK-DGYELHHALIFVVMLIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ + L R SE+ + R G+S +L ++ + T ++
Sbjct: 60 GRVYELLPVAVLIGTLYALTTLARHSEITVMRVSGMSTPAMLRALGGIGVIFVVLTFVIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E+ + + W++ + + +LP+ E
Sbjct: 120 EYVAPPAEQAAQQWRLTATHSAVSNQLRSGLWVK----DGLRVVNVRTVLPDRS-MEKVR 174
Query: 181 SITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQY-GRIPIDKNSTTLN-----IPI 232
D ++ ++ +A L+ V + ++ G + T L P
Sbjct: 175 IYDFDAQHALLSISEAATGRYDAAQQGWLLEGVRQTRFLGDHTDVVDLTELTWRSDLTPQ 234
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ E+ + + + I + + + + R E + +V P + M +A
Sbjct: 235 VLSVLMVVPERMSVTTLFAYISHLRENRQ----NADRYEIALWKKLVYPFAALVMMALAL 290
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S R + V G+ G + + + S G P AAL P L ++ +
Sbjct: 291 PFSFTHDRMGGVSMKVFLGVMLGIGFHLLNGLFSSLGVINSWQPALAALTPSALFLAAAA 350
Query: 353 LILLQKE 359
+L+ E
Sbjct: 351 GMLVWVE 357
>gi|256823037|ref|YP_003147000.1| permease YjgP/YjgQ family protein [Kangiella koreensis DSM 16069]
gi|256796576|gb|ACV27232.1| permease YjgP/YjgQ family protein [Kangiella koreensis DSM 16069]
Length = 354
Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats.
Identities = 62/359 (17%), Positives = 128/359 (35%), Gaps = 11/359 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K L T++ L I+ + L + G+ +Y G + P
Sbjct: 2 NILRFYIGKTILATSVMTLFTLAIIRVLFSLIDESGDFGK-GSYQFVDGLAYSLLLSPQY 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I + P L+ +I L SEL + RA G + Q++ + ++L F + +
Sbjct: 61 IYEFFPMAILIGSIAGLGLLASHSELTVMRAAGKTTMQIVGSALSYGLILIAFAIFLGEY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A ++ D+ + K++ W++ + + ++L + + +
Sbjct: 121 VAPKTTRMAEDIRNRAILGEQLLKAEQGVWVKDGSK----MVHIDEMLGSD-RMDGVSIY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVE---YQYGRIPIDKNSTTLNIPIKMDGFQK 239
D + K+ A A+I +L+ + G ++ I+MD
Sbjct: 176 QFDSQQKLESIIHAPSALISEGVWRLQNGYQSYLTDTGINRERFDAMEWRTNIQMDNLSV 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S+ + + + + +N + F+ I+ PL M ++AAS
Sbjct: 236 LSDDPETLDIMSLYRYREYLA-NNGLDTQSYDLAFWRKIIQPLSTAIMIVLAASFVFGPM 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS V G+ +G + + + A++P + + LL+K
Sbjct: 295 RSVSMGARVLVGVLTGMAYFFAVRTFGPVSLVFGMPAFFGAILPPAIF-AAGAWYLLRK 352
>gi|315125734|ref|YP_004067737.1| hypothetical protein PSM_A0636 [Pseudoalteromonas sp. SM9913]
gi|315014248|gb|ADT67586.1| hypothetical protein PSM_A0636 [Pseudoalteromonas sp. SM9913]
Length = 355
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 55/364 (15%), Positives = 125/364 (34%), Gaps = 16/364 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y + L+TT + L+ + + +I E +G +Y I + +P
Sbjct: 1 MMKTLDWYLGRSILQTTGFALMVLVGISTLIKFIEQLKSVGR-GSYDIMTAMLYTIYSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P L+ + L SELV+ +A G+S Q++ + +I + + + +
Sbjct: 60 DDLVVFFPMAALIGGLTGLGALASNSELVVMQAAGMSRLQIIGSVMKTAIFMALCVMALG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A + + ++ Q GD + W + +N FI + + +
Sbjct: 120 EWGAPAAQLHAKEMRNQAIHGGDVFNAQKGVWAKDANN----FINIEDVDQNG-MLRGVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN------IPIKM 234
DK + A A+ + L+ V + I + K+
Sbjct: 175 MYHFDKSLSLTQITKAKEAVGRDSGWLLRDVNKVMISEELITTEQVSEEFYPSQLTAEKL 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
E + + + + + + + + ++ P+ + M L+A S
Sbjct: 235 GVVSVKPESLSFSGLWSYLAYLQQNEQ----DTSTYDLALWRKLMQPVSIAVMLLVALSF 290
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R+ + G+ +G + + I + + A++P IL + +
Sbjct: 291 IFGPLRTVTMGARIIMGVVTGIVFHLTNEIFGPVVMVYQIPAIIGAVLPSILFTGFAAYL 350
Query: 355 LLQK 358
+ ++
Sbjct: 351 MNKR 354
>gi|157827727|ref|YP_001496791.1| putative permeases [Rickettsia bellii OSU 85-389]
gi|157803031|gb|ABV79754.1| Putative permeases [Rickettsia bellii OSU 85-389]
Length = 362
Score = 193 bits (492), Expect = 3e-47, Method: Composition-based stats.
Identities = 75/361 (20%), Positives = 145/361 (40%), Gaps = 5/361 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K Y K L + L+ + +L ++ + + +VP
Sbjct: 4 LKTLSWYLAKLYFKCFFIILFILIGLLIISNLFDLLQKFKNM-YVPFDFFWRFILYKVPY 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI ++N
Sbjct: 63 LLNQVSALISFTSMLFFLRNLTKNNELTAILSSGIHIWQVLIIPCIVTLILGIVFTTILN 122
Query: 122 PIATSGEKIGIDLIQQ--WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
PI G + L + K + + S + ++ I + I +
Sbjct: 123 PIGALGLQKYDLLEAKLTKKTHNEAVISKSGLLFFEALNGKNQIIQTQFINISEKKLNNI 182
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T + ID N + R DA II N + L +V + N+ T+ + ++
Sbjct: 183 TVLFIDNNNNFLKRIDALYGIIENKSLHLNRVKVFTKDST-EAHNNLTIPTNLSVNSLVN 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S +++ K + S + + +Y + P M++A ++A+
Sbjct: 242 KFTHPEMVSIWKLPKLIDELLNSGLPITN-YQVYYYKQLFKPAMMIATIILASCFISLKQ 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R N I+ G+FSGF++Y++ I+ L +AA L+P +L +S I+L +
Sbjct: 301 RDNSQEKILILGLFSGFIVYSLSEILLKVLTYNNLSLIAAILLPSMLIFFISNFIILHYK 360
Query: 360 D 360
+
Sbjct: 361 E 361
>gi|89075942|ref|ZP_01162317.1| putative permease [Photobacterium sp. SKA34]
gi|89048383|gb|EAR53961.1| putative permease [Photobacterium sp. SKA34]
Length = 338
Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats.
Identities = 62/346 (17%), Positives = 114/346 (32%), Gaps = 18/346 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + T L + L +I E ++G+ +Y + + +P
Sbjct: 1 MFKILDWYIGRTIIATFSLTLSTLVGLSAIIKYVEQLRKVGQ-GSYDLLKALYFVLLSMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ L +SELV+ +A G S + + ++ + I VL+
Sbjct: 60 QDIIMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSTLKTAVPMMIVVVLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ + W G + W + + FI ++ N + +
Sbjct: 120 QWGAPQAQKMAREYRSAWIYGGSVIAAQSGVWAK----NDNSFIYMGRVHDLNKV-DVVN 174
Query: 181 SITIDKKNKIIHRKDADLAIIYND-KVKLKKVVEYQYGRIPIDKNS-------TTLNIPI 232
D K ++ A A + V NS T P
Sbjct: 175 IWQFDNKGQLEDVTSAKRASYDKATGWTMHDVTITDMIGSSQLTNSQIASKHWETTLTPD 234
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ E+ + Y + + + + R + F+ + P+ + M L+A
Sbjct: 235 KLAVVTVKPEELSLSGLYHYVNYLKETKQ----DASRYDLAFWRKALQPISIAVMMLLAL 290
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
S RS V G+ GF Y + L P+
Sbjct: 291 SFVFGPLRSVTMGARVLSGVIFGFAFYISDQVFGPMILVYRLPPIL 336
>gi|189345952|ref|YP_001942481.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
gi|189340099|gb|ACD89502.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
Length = 360
Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats.
Identities = 72/365 (19%), Positives = 149/365 (40%), Gaps = 19/365 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L+R+ F+ ++ + L+ + L +I + E ++ + IS +P
Sbjct: 2 KLLYRHIFRQFMTSFLFASIAFAALFTLITMVENLDEFFDR-GIGISGIVWYYLLALPST 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG---IFTVLV 119
Q P L+ +I+ L+ +SEL R+ G+ + QL+ P+V+G +L+ +
Sbjct: 61 FQITAPVAALLASILTAGRLSASSELAAIRSAGVGMSQLMRPYVLGGLLISGINLLNASF 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ P A + + +G + ++I ++ + + ++
Sbjct: 121 LEPAAAKEKISFEKQVLNETRSGLHEGTNIHVI-----EPENRIVTIESFDAKHLQASKV 175
Query: 180 TSITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIP----IDKNSTTLNIPIK 233
T + +++I RKDA + D+ ++K +G P + TLN+ +
Sbjct: 176 TVEQFN-GSRLISRKDASRMVFDPAIDRWIMQKAAIRSFGADPGEISFSTGNDTLNLLLS 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ Q+ S Q + + + + ++ RA + + +PL + + I
Sbjct: 235 IQSLQELSLQPEEMNLMQHYRYVKEKMQAGFPGLDRARVKLHAKTALPLASLVIIFIGVP 294
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S RS +A +F GF+ + + S G +GI+ P AA +P+IL L
Sbjct: 295 LSTVKKRSG-LAAEIAIALFIGFLFLGMQKTVASLGYNGIIEPWIAAWLPIILF--LGAG 351
Query: 354 ILLQK 358
LL K
Sbjct: 352 ALLYK 356
>gi|119471262|ref|ZP_01613765.1| hypothetical protein ATW7_11360 [Alteromonadales bacterium TW-7]
gi|119445728|gb|EAW27011.1| hypothetical protein ATW7_11360 [Alteromonadales bacterium TW-7]
Length = 354
Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats.
Identities = 53/362 (14%), Positives = 123/362 (33%), Gaps = 16/362 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L Y + L+TT + LL + + +I E +G +Y + + +P
Sbjct: 2 KTLDWYLGRSILQTTGFALLVLVGISTLIKFIEQLKSVGR-GSYDLITAMLYTLYSIPGD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ + L SELV+ +A G+S Q++ + ++ + I + +
Sbjct: 61 LVVFFPMAALIGGLTGLGALASNSELVVMQAAGMSRLQIIGSVMKTAMFMAICMMALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A + ++ Q GD + W + + FI + +
Sbjct: 121 GAPEAQLRAKEMRNQAIHGGDVFSAQKGVWAK----DGNNFINIEDVDESG-KLNGLHMY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV------VEYQYGRIPIDKNSTTLNIPIKMDG 236
D ++ A AI D L+ V E + ++ + K+
Sbjct: 176 YFDSSLELTQITKAKEAISRKDGWLLRDVNKVIITDELITTELHPEEFYPSQLTAEKLGV 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E + + + + + + + + + P+ + M L+A S
Sbjct: 236 VSVKPESLSFTGLWSYLSYLEQNEQ----DTSTYDLALWRKFMQPVSVAVMLLVALSFIF 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R+ + G+ +G + + I + + A++P ++ I + ++
Sbjct: 292 GPLRTVTMGARIIMGVVTGIVFHLTNEIFGPVVMVYQIPAIIGAVLPSVIFIGFATYLMN 351
Query: 357 QK 358
++
Sbjct: 352 KR 353
>gi|299138457|ref|ZP_07031636.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX8]
gi|298599703|gb|EFI55862.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX8]
Length = 785
Score = 192 bits (488), Expect = 8e-47, Method: Composition-based stats.
Identities = 71/370 (19%), Positives = 134/370 (36%), Gaps = 19/370 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNY--SISRGAVLAATRV 59
P IL Y +L+ L + L + E+ +G++ Y + +
Sbjct: 418 PLILDEYVMGSFLRNFGLVLTSLVGLFLIFTFFEL---IGDIIKYRTPLVTVGEYLLNLI 474
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I+ + P +LV ++ F L+RTSEL +A G+S++++ P ++ ++ L
Sbjct: 475 PFILYNVTPLCSLVAVLITFGALSRTSELTAMKATGVSLYRIATPVLLVALALSAILFAF 534
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQ-KSDIIPWM---QISNPQQDIFIGAKKILPENHI 175
+ + L K + WM + N + + + ++
Sbjct: 535 DETYLPAANRKQEALRSVIKGKPAQTFLRADRKWMSGQTLGNKEPTRIFYYQFFDSDKNV 594
Query: 176 WEDFTSITIDKK-NKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDK-NSTTLN-- 229
+ + T + R A A + ++ + + + I TLN
Sbjct: 595 FANLTVFEFQPGTFTLTRRIFATSARWDDSVNRWVFENGWQRTFSGDAISSYQPFTLNSF 654
Query: 230 --IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
I + F+K Q S+ E+ K + +S F R Q I PLM + M
Sbjct: 655 PEIHEQPGYFKKEDRQSQEMSYSELSKYIRDLKQSG-FDTTRLRVQLNRKIAYPLMALVM 713
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
++A +L + + GI + I I ++ G L + AA P IL
Sbjct: 714 AILAVPFALSTGKRGGLAGM-GAGIGVAISYWVIAAIFENLGNVNSLPSILAAWSPDILF 772
Query: 348 ISLSILILLQ 357
+ +LL+
Sbjct: 773 AMVGTYLLLR 782
Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 57/380 (15%), Positives = 121/380 (31%), Gaps = 36/380 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I RY + + L + + ++ S + L +P +
Sbjct: 3 IFTRYILREVVGYALL-GGVLFTFILFMRYLLALMELAVHGAASFADILRLIGYLLPYFL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIG---ISIWQLLNPFVVGSILLGIFTVLVI 120
IP L+ ++ L SE+ RA G +S ++++ V S +G+ L +
Sbjct: 62 TLTIPMAVLIGILLGLSRLAADSEITAMRASGMGVLSFVRIVSIVAVLSWAVGLVNSLYV 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-QDIFIGAKKILPENHIWEDF 179
P A + + Q++ G ++ I ++ ++ + + ++P + E
Sbjct: 122 APRAAAA-------LLQYEAQGASGEAAIQVQPRVFYEDFKNYVLYVQDVVPGSGAAEWK 174
Query: 180 TSITID----KKNKIIHRKDAD-LAIIYNDKV---KLKKVVEYQY-GRIPIDKNSTTL-- 228
D II ++A + + +L + G P + +T
Sbjct: 175 NVFLADLTQPATPHIITSQEALVTGTPGDPQTLRMQLSDGSRHDIAGNNPNQYDISTFAS 234
Query: 229 -NIPIKMDGFQ------KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
+PI+ + + + S E+ K S + + P
Sbjct: 235 TELPIQTGQQEEDSHISRRDTPIQALSMGELWKFAHGSG-----DTQPYFIELHRRFSYP 289
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ + L+ + L R A + F Y + + + + G L A
Sbjct: 290 AACLVLMLVGVPLGLSSKR-GGKGTGFAITLVLVFAYYILSFVGSALARQGKLSAFAGVW 348
Query: 342 IPVILTISLSILILLQKEDG 361
I+ +L+L Q G
Sbjct: 349 GANIIFGVAGVLLLQQMSRG 368
>gi|91204945|ref|YP_537300.1| putative permeases [Rickettsia bellii RML369-C]
gi|91068489|gb|ABE04211.1| Putative permeases [Rickettsia bellii RML369-C]
Length = 362
Score = 191 bits (487), Expect = 1e-46, Method: Composition-based stats.
Identities = 75/361 (20%), Positives = 145/361 (40%), Gaps = 5/361 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K Y K L + L+ + +L ++ + + +VP
Sbjct: 4 LKTLSWYLAKLYFKCFFIILSILIGLLIISNLFDLLQKFKNM-YVPFDFFWRFILYKVPY 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI ++N
Sbjct: 63 LLNQVSALISFTSMLFFLRNLTKNNELTAILSSGIHIWQVLIIPYIVTLILGIVFTTILN 122
Query: 122 PIATSGEKIGIDLIQQ--WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
PI G + L + K + + S + ++ I + I +
Sbjct: 123 PIGALGLQKYDLLEAKLTKKTHNEAVISKSGLLFFEALNGKNQIIQTQFINISEKKLNNI 182
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T + ID N + R DA II N + L +V + N+ T+ + ++
Sbjct: 183 TVLFIDNNNNFLKRIDALYGIIENKSLHLNRVKVFTKDST-EAHNNLTIPTNLSVNSLVN 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S +++ K + S + + +Y + P M++A ++A+
Sbjct: 242 KFTHPEMVSIWKLPKLIDELLNSGLPITN-YQVYYYKQLFKPAMMIATIILASCFISLKQ 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R N I+ G+FSGF++Y++ I+ L +AA L+P +L +S I+L +
Sbjct: 301 RDNSQEKILILGLFSGFIVYSLSEILLKVLTYNNLSLIAAILLPSMLIFFISNFIILHYK 360
Query: 360 D 360
+
Sbjct: 361 E 361
>gi|224825294|ref|ZP_03698399.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
gi|224602215|gb|EEG08393.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
Length = 358
Score = 191 bits (487), Expect = 1e-46, Method: Composition-based stats.
Identities = 72/365 (19%), Positives = 140/365 (38%), Gaps = 18/365 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+++RY TLY L + L D+ + +G +Y + + + A +P
Sbjct: 2 KLIYRYITTQLTVATLYALAALLALYAFFDIIKEVPDLGH-GSYGVPQMLLYIALLMPGH 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P + L+ +V L +SE I R G+++ Q+ + I + T L+
Sbjct: 61 AYELMPLVVLIGGMVAMTQLATSSEYTIIRTSGVTLAQVAGVLLRFGIGFAVITGLLGEF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A EK + + Q+ W++ FI ++LP+N +
Sbjct: 121 GAPFSEKQAERMKLSATKSMVTQEFHSGIWVK----DDQNFINVGEMLPDNTLL-GVRIY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNST-TLNI-----PIKM 234
T DK +++ + A+ + +L+KV E G TL+ P +
Sbjct: 176 TYDKDYRLVQTRFAERGTYQRPQHVWRLEKVKETTLGDKATTTRQLNTLDWHSVIEPSIL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D EQ ++ I+ + + + R E + PL ++M L+A +
Sbjct: 236 DVLLVVPEQMSAMDLTTYIEHLRSNEQK----TQRYEIALWSKFFYPLACISMALVALAF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ R Q I + GI G + + + G + AA +P +L + I I
Sbjct: 292 TPRQRRHAQLGIRLFVGICLGVAFHFVNRLFAHLGLLYDWNAMFAATLPTLLFLLAGITI 351
Query: 355 LLQKE 359
+++E
Sbjct: 352 TVRQE 356
>gi|194337384|ref|YP_002019178.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309861|gb|ACF44561.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 359
Score = 191 bits (487), Expect = 1e-46, Method: Composition-based stats.
Identities = 61/357 (17%), Positives = 135/357 (37%), Gaps = 10/357 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL +Y + K L+ + L +I++ E ++ + + + +P I
Sbjct: 2 KILNKYILGQFAKAFLFTSIAFACLFILINMVEKLDEFIDK-KLGLWQIVHYYLLSIPSI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + P L+ +I+V L+ + EL R+ G+S+ QLL PF+ G +L+ +F +L
Sbjct: 61 LLVVSPVSALLSSILVAGKLSFSGELPAIRSAGVSMRQLLTPFITGGVLILLFNLLNAGW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I+ S Q++ Q + + + + P+ +
Sbjct: 121 ISPSTFAEKNHFEQRYLKRNPAQPQENRNIH--ILEPGNRMLSIGTLDPDQAEISAVSIE 178
Query: 183 TIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQY---GRIPIDKNSTTLNIPIKMDGF 237
++ R DAD + L + + T++ + +
Sbjct: 179 EF-SGARLKSRTDADSMRYNQKTGEWILLNAAKRSFTGKDETFHLTPVTSVKLALSPRSL 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + Q + + ++ + R+ +F+ I +P + + LI +S +
Sbjct: 238 SELNLQPDEMNLIRHYRYLTEKEGAGFAGLERSTVKFHNKIALPFASLIIILIGVPLSAK 297
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R ++ +F+GF+ + + G G++ P+ AA +P IL + + I
Sbjct: 298 KKR-GGLASEISITLFAGFLFMGVQKTIAIAGYQGMINPMLAAWLPNILFLGIGYAI 353
>gi|254491744|ref|ZP_05104923.1| putative permease, YjgP/YjgQ family [Methylophaga thiooxidans
DMS010]
gi|224463222|gb|EEF79492.1| putative permease, YjgP/YjgQ family [Methylophaga thiooxydans
DMS010]
Length = 354
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 68/352 (19%), Positives = 131/352 (37%), Gaps = 10/352 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K + +TL LL + L +D + +G+ NY I A +P
Sbjct: 2 KILQRYIAKNIIASTLLVLLVLLGLYTFMDFITELDDLGK-GNYQILDILSYLALTMPKR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +++P L+ +++ NL SELV RA G+SI + ++ + LL + +++
Sbjct: 61 IYELLPVAALMGSVIGLGNLASQSELVAMRAAGVSIKDINKAVLIVAGLLVVVALVMGEV 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
E+ + + +S+ W + N F ++I + + +
Sbjct: 121 FRPIAEQKARQMQSVSQTGTVGSRSEYGFWTRDGNH----FNHIERINADGS-FSNVAIY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQK 239
D K+++ A A D L VV+ ++ +S +
Sbjct: 176 EFDDKHRLRILTQAVAAEYQQDSWILSDVVQSTIDEKGVEVSSVAHARWKSQLNPGMVNI 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+++++ + + + N + E F+ +++PL M L+A
Sbjct: 236 VVVPPEFLPVWDLLEYVQYLKR-NHQSVAQYELAFWSKMMMPLSTAVMVLLAVPFVFGPL 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
RS V G G + + G LLP A+ P ++ L+
Sbjct: 295 RSTPIGGRVLAGTLLGIGFHLFNQSFQHMGLVFGLLPWLASAFPTMVFAGLA 346
>gi|307250355|ref|ZP_07532304.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306857630|gb|EFM89737.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
Length = 360
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 76/365 (20%), Positives = 143/365 (39%), Gaps = 18/365 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K + LL + LVF+I L E +G+ +Y + +P
Sbjct: 7 NILERYIGKTIITMVFAVLLMSSGLVFIIKLVEEFKDVGK-GSYDALTATYYSLLMLPSD 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I++ IP + L+ ++ NL SELV+ ++ G S +++ + +I L +FT+LV
Sbjct: 66 IKEFIPVVALIGGLLGLGNLASRSELVVMQSSGFSRFRIGLAVMKTAIPLIVFTMLVSEW 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
E+ ++ + G + W + N FI + I E + +
Sbjct: 126 GIPQTEQYARNMRSIAQSGGSMLSTKGGFWAKDGND----FIYIRHIENE-RKLNNVSIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID------KNSTTLNIPIKMDG 236
+ K + AD A+ + L++V I K+ T P K+
Sbjct: 181 HFEDKA-LKSVTQADNAVFNGENWTLQRVQTSSLADNSIQQAKEVNKDWQTTITPSKLGI 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E + + + + + + + R + F+ + P+ + M L+A S
Sbjct: 240 VSLKPESLSISGLSDYVGFLKETGQ----DSKRFQIAFWRKVYQPISMAVMMLLAISFVF 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF-GKSGILLPVAAALIPVILTISLSILIL 355
RS+ + GI +GF+ Y + + + ALIP ++ +S+ +L
Sbjct: 296 GPLRSSAMGTKLFIGIIAGFVFYVSNIVFGNMTLVFSWIPVAIGALIPSLICLSIVWWLL 355
Query: 356 LQKED 360
+K D
Sbjct: 356 TKKRD 360
>gi|289209273|ref|YP_003461339.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. K90mix]
gi|288944904|gb|ADC72603.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. K90mix]
Length = 357
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 61/361 (16%), Positives = 131/361 (36%), Gaps = 11/361 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY + L T ++ + L V + + G NY ++ + A +P
Sbjct: 1 MTTVLGRYVIRQVLIGTTLAVVLLVALDAVFAMIDELRDTGA-GNYGVTEAMLYVALTLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P LV ++ NL SEL RA G+++ + + + +++ + +++
Sbjct: 60 RRMYEMLPPAALVGGLLWLGNLAANSELTAMRAAGMTLGRFIVWVLQAGLVVVMVMLIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A + E L D S + W + I A+ +L +
Sbjct: 120 EFFAPASETRAQALKASAFDEEISVGS-MGLWAR----DGQRMIHAESVLA-GNQLVGVR 173
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR---IPIDKNSTTLNIPIKMDGF 237
I + A A + +L+ V + + T++ I + F
Sbjct: 174 IIEFTGDREPSWITRAARARFVDGDWRLEDVERSLLSHDRVVAEHRAEETIDRLIAPEYF 233
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + ++ + + + + N E F+ +P M L+A
Sbjct: 234 DVLVVEPSQMAALDLSRYIDYL-RENQLDAAPYEVAFWQRFTLPASTFVMLLLAIPFLFG 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + GI G ++ + G L P+ AA +PV+L +++++ L +
Sbjct: 293 SQREGGAGQRLFIGIAIGVSFVIVMRAITHLGLVYNLPPLLAACLPVLLFLAIALFALRR 352
Query: 358 K 358
Sbjct: 353 M 353
>gi|32035302|ref|ZP_00135309.1| COG0795: Predicted permeases [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|126208576|ref|YP_001053801.1| hypothetical protein APL_1104 [Actinobacillus pleuropneumoniae L20]
gi|165976526|ref|YP_001652119.1| permease [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|190150429|ref|YP_001968954.1| hypothetical protein APP7_1160 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|303250151|ref|ZP_07336353.1| permease [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|303253324|ref|ZP_07339473.1| permease [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|307248124|ref|ZP_07530152.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|307252739|ref|ZP_07534630.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307257155|ref|ZP_07538927.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 10 str. D13039]
gi|307261583|ref|ZP_07543251.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|307263772|ref|ZP_07545378.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
gi|126097368|gb|ABN74196.1| hypothetical protein APL_1104 [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|165876627|gb|ABY69675.1| predicted permease [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|189915560|gb|ACE61812.1| hypothetical protein APP7_1160 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|302648006|gb|EFL78213.1| permease [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|302651214|gb|EFL81368.1| permease [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306855301|gb|EFM87476.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|306859771|gb|EFM91793.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306864317|gb|EFM96228.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 10 str. D13039]
gi|306868706|gb|EFN00515.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|306870893|gb|EFN02631.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
Length = 360
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 76/365 (20%), Positives = 143/365 (39%), Gaps = 18/365 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K + LL + LVF+I L E +G+ +Y + +P
Sbjct: 7 NILERYIGKTIITMIFAVLLMSSGLVFIIKLVEEFKDVGK-GSYDALTATYYSLLMLPSD 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I++ IP + L+ ++ NL SELV+ ++ G S +++ + +I L +FT+LV
Sbjct: 66 IKEFIPVVALIGGLLGLGNLASRSELVVMQSSGFSRFRIGLAVMKTAIPLIVFTMLVSEW 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
E+ ++ + G + W + N FI + I E + +
Sbjct: 126 GIPQTEQYARNMRSIAQSGGSMLSTKGGFWAKDGND----FIYIRHIENE-RKLNNVSIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID------KNSTTLNIPIKMDG 236
+ K + AD A+ + L++V I K+ T P K+
Sbjct: 181 HFEDKA-LKSVTQADNAVFNGENWTLQRVQTSSLADNSIQQAKEVNKDWQTTITPSKLGI 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E + + + + + + + R + F+ + P+ + M L+A S
Sbjct: 240 VSLKPESLSISGLSDYVGFLKETGQ----DSKRFQIAFWRKVYQPISMAVMMLLAISFVF 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF-GKSGILLPVAAALIPVILTISLSILIL 355
RS+ + GI +GF+ Y + + + ALIP ++ +S+ +L
Sbjct: 296 GPLRSSAMGTKLFIGIIAGFVFYVSNIVFGNMTLVFSWIPVAIGALIPSLICLSIVWWLL 355
Query: 356 LQKED 360
+K D
Sbjct: 356 TKKRD 360
>gi|15604603|ref|NP_221121.1| hypothetical protein RP769 [Rickettsia prowazekii str. Madrid E]
gi|3861298|emb|CAA15197.1| unknown [Rickettsia prowazekii]
gi|292572419|gb|ADE30334.1| Putative permease [Rickettsia prowazekii Rp22]
Length = 362
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 77/361 (21%), Positives = 150/361 (41%), Gaps = 5/361 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K Y K L + L+ + ++ ++ + + S ++P
Sbjct: 4 LKTLSLYLTKLYSKCFFIILFLLIGLLIISNIFDLLQKFKNI-YVPFSFFWRFILYKIPY 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q+ I+ + NL +++EL + GI IWQ+L + +++LGI ++N
Sbjct: 63 LLSQVSSLISFTSMLFFLRNLTKSNELTAILSSGIHIWQVLIIPCIVTLILGIICTTILN 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
PI+T G + L + + S+ S + + I K I +
Sbjct: 123 PISTIGLQKYSLLEAKLTKKALSECLISESGLLFFESLNEHNQIIQTKFIDVAEKKLNNI 182
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T + ID N + R DA II N K+ L +V I ++ T+ + ++
Sbjct: 183 TILFIDNNNSFLKRIDALYGIIDNKKLYLNRVKVSTKDEIK-SYSNLTIQTNLSINSLVN 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S + + K ++ S + + +Y + P+M++A ++A+
Sbjct: 242 KFMRPEMVSIWALPKLINELLNSGL-SAINYQIYYYKQLFKPIMMMATVILASCFISLKQ 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R N I+ G+FSGF+ Y++ I+ L +AA L+P +L +S I+L +
Sbjct: 301 RCNSQEKILILGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIILHYK 360
Query: 360 D 360
+
Sbjct: 361 E 361
>gi|167856192|ref|ZP_02478929.1| hypothetical protein HPS_08251 [Haemophilus parasuis 29755]
gi|167852681|gb|EDS23958.1| hypothetical protein HPS_08251 [Haemophilus parasuis 29755]
Length = 355
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 70/365 (19%), Positives = 136/365 (37%), Gaps = 18/365 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + L + + L + L +I E +G +Y A +P
Sbjct: 2 NVLERYIGRTILASIMLTLFMLVGLGAIIKFVEEFRSVGR-GSYDGLHAAYYTLLTMPRD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I+ P L+ +++ L SELV+ ++ G S +++ + +I L + T+++
Sbjct: 61 IETFFPIAALLGSLMGLGGLASRSELVVMQSAGFSRFRIGLAVMKTAIPLMVLTMIMGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
E+ ++ + G + W + N FI ++I E + +
Sbjct: 121 GVPQTEQYARNMRSIAQSGGSMLATQGGFWAKDGND----FIYIRQIQDERN-LNNILIY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN------IPIKMDG 236
D + + K A+ A L+KV + + I + T P K+
Sbjct: 176 QFDNQV-LKSIKQAEKATYSEQGWLLQKVDKSEIHESGITQTRETDQTWKTSITPSKLGI 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E + + + + + + R E F+ + P+ + M L+A S
Sbjct: 235 ASLKPESLSISGLADYVGFLKDTGQ----DPKRFEITFWRKVFQPISMAVMMLLAISFIF 290
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK-SGILLPVAAALIPVILTISLSILIL 355
RS+ + GI +GF+ Y + + L ALIP +L +S+ +L
Sbjct: 291 GPLRSSTMGAKIVIGILTGFVFYVANIVFGNLSLVVSWLPVPIGALIPSLLCLSVVWWLL 350
Query: 356 LQKED 360
+K D
Sbjct: 351 NKKRD 355
>gi|34498371|ref|NP_902586.1| hypothetical protein CV_2916 [Chromobacterium violaceum ATCC 12472]
gi|34104225|gb|AAQ60584.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 358
Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 63/365 (17%), Positives = 137/365 (37%), Gaps = 18/365 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY ++TL+ LL + L DL +G NY+ A A +P
Sbjct: 2 KLIHRYIVSTLTQSTLFTLLALLGLYGFFDLLGEVPALGT-GNYTAGVMATYVALLIPGH 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ +V L +SE + R G+++ Q+ + + + T+L+
Sbjct: 61 AYELMPLAVLIGGMVAMTQLASSSEYTVIRTSGVTLKQIAATLLKFGLGFAVLTILLGEF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A + + ++ W++ + FI ++LP+N +
Sbjct: 121 AAPWAMQEAERTRLTATHSIVAKEFRSGTWVKDN----QNFINVHEMLPDNTLL-GIRIY 175
Query: 183 TIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPIDKNST------TLNIPIKM 234
T D+ K+ + A+ + +L+ V E ++ P +
Sbjct: 176 TYDQDFKLERTRIAERGTFSKQDRSWQLENVKETVLAPNRTISAVYPTLKWKSIVEPEIL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
EQ ++ + I+ + + + R E + + PL ++M L+A +
Sbjct: 236 SVLLVVPEQMSAHNLLTYIEHLKKNKQQ----TQRYEIALWSKLFYPLACISMALVALAF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + R Q I + GI G + + + G + +A +P ++ + I I
Sbjct: 292 TPQQRRHGQLGIKLFAGICLGVTFHFVNRLFGHLGLLYDWNAILSATLPTLIFLLGGIAI 351
Query: 355 LLQKE 359
+ ++E
Sbjct: 352 IAKQE 356
>gi|254446939|ref|ZP_05060406.1| permease YjgP/YjgQ [gamma proteobacterium HTCC5015]
gi|198263078|gb|EDY87356.1| permease YjgP/YjgQ [gamma proteobacterium HTCC5015]
Length = 347
Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 60/354 (16%), Positives = 128/354 (36%), Gaps = 11/354 (3%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ L T LL + L + +YS RVP + +P
Sbjct: 1 MARAILAATALVLLVILFLDAFFGFLGEGKYVARYADYSYWHAIGYVMLRVPGKAMEFMP 60
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
ITL+ ++ L SEL RA G+S +++ + +++ + L+ +A +
Sbjct: 61 AITLIGALLGLGTLASNSELTAMRAAGLSKGRIVWGGMKTGLIIALAVALLGEYVAPQSD 120
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
Q + + W++ D F+ K+ P+ + ++
Sbjct: 121 LKAAAFRAQAQGRAITSELRD-FWLK----NGDEFVYIKRAEPD-KRLRGVRIFQV-QEG 173
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQKFSEQFA 245
++ A A +L +V EY++ + + T + + +D F+
Sbjct: 174 ELKRLLKAASAQHTASGWRLNQVREYRFEDDAVSRKVIGQMTKSQLVDVDLFEVAQLSPE 233
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ E+ +++ + N F+ + PL ++ M L+A RS
Sbjct: 234 NMRLLELDNYIAYLDD-NRLEATLYRKAFWKKVTAPLSILVMLLLAMPFIFANRRSGNAG 292
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ GI G Y I +++++ G+ + + A P++ +L +L + E
Sbjct: 293 ARLVIGILFGMSYYIISSLIENLGQVYGVPVLLGAFTPIVAFTALGFWLLKRSE 346
>gi|307246020|ref|ZP_07528102.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307255001|ref|ZP_07536819.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307259437|ref|ZP_07541162.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
gi|306852955|gb|EFM85178.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|306861874|gb|EFM93850.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306866373|gb|EFM98236.1| Lipopolysaccharide export system permease protein lptG
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
Length = 360
Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats.
Identities = 76/365 (20%), Positives = 143/365 (39%), Gaps = 18/365 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K + LL + LVF+I L E +G+ +Y + +P
Sbjct: 7 NILERYIGKTIIAMIFAVLLMSSGLVFIIKLVEEFKDVGK-GSYDALTATYYSLLMLPSD 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I++ IP + L+ ++ NL SELV+ ++ G S +++ + +I L +FT+LV
Sbjct: 66 IKEFIPVVALIGGLLGLGNLASRSELVVMQSSGFSRFRIGLAVMKTAIPLIVFTMLVSEW 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
E+ ++ + G + W + N FI + I E + +
Sbjct: 126 GIPQTEQYARNMRSIAQSGGSMLSTKGGFWAKDGND----FIYIRHIENE-RKLNNVSIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID------KNSTTLNIPIKMDG 236
+ K + AD A+ + L++V I K+ T P K+
Sbjct: 181 HFEDKA-LKSVTQADNAVFNGENWTLQRVQTSSLADNSIQQAKEVNKDWQTTITPSKLGI 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E + + + + + + + R + F+ + P+ + M L+A S
Sbjct: 240 VSLKPESLSISGLSDYVGFLKETGQ----DSKRFQIAFWRKVYQPISMAVMMLLAISFVF 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF-GKSGILLPVAAALIPVILTISLSILIL 355
RS+ + GI +GF+ Y + + + ALIP ++ +S+ +L
Sbjct: 296 GPLRSSAMGTKLFIGIIAGFVFYVSNIVFGNMTLVFSWIPVAIGALIPSLICLSIVWWLL 355
Query: 356 LQKED 360
+K D
Sbjct: 356 TKKRD 360
>gi|270157966|ref|ZP_06186623.1| putativeYjgP/YjgQ family permease [Legionella longbeachae D-4968]
gi|289163767|ref|YP_003453905.1| membrane protein [Legionella longbeachae NSW150]
gi|269989991|gb|EEZ96245.1| putativeYjgP/YjgQ family permease [Legionella longbeachae D-4968]
gi|288856940|emb|CBJ10754.1| putative membrane protein [Legionella longbeachae NSW150]
Length = 356
Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats.
Identities = 62/358 (17%), Positives = 127/358 (35%), Gaps = 10/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K + + L + L I + + +G + +Y I + ++P
Sbjct: 4 KILDRYIAKTVIGSIGLVTLMLIGLQIFILFVDQISDLGRV-DYGIVQATFFVMLQMPYQ 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P +L+ ++ L SELVI RA G+SI Q+ + S+LL IF ++
Sbjct: 63 VYLFFPMASLLGTLIGLGILANHSELVIMRASGMSIGQITVAVLKASVLLIIFVTVLGET 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ D G ++ W++ +N FI +L N + +
Sbjct: 123 LVPYLSHYANDYKTAAISGGQTLRTSKGFWLRYNND----FISVGVVLSNN-VLNNIYQF 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI---PIDKNSTTLNIPIKMDGFQK 239
D ++ + + V + ++G S ++ +K
Sbjct: 178 RFDNQHHLKMSRFIREVRHTPTGWIAYDVQQTEFGGDQTKAQAFASLPWDVSVKPKILTI 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + E+ + + + K N + + + F ++ P + M +++
Sbjct: 238 SSIDPDEMNLRELNRYIR-AQKLNHQNIHNYQFAFLQRLIQPFTTMVMMILSIPFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + G GF + + L P +AL P ++ L + ++ +
Sbjct: 297 RSTTMGSKLLVGAAVGFSFHILNRFFGPLSTVFQLPPELSALGPTVIFALLGLYLMKR 354
>gi|86147549|ref|ZP_01065859.1| hypothetical protein MED222_22708 [Vibrio sp. MED222]
gi|85834588|gb|EAQ52736.1| hypothetical protein MED222_22708 [Vibrio sp. MED222]
Length = 323
Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats.
Identities = 62/335 (18%), Positives = 115/335 (34%), Gaps = 21/335 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++G Y + + +P
Sbjct: 1 MFKILDLYIGRTIIATTSLVLVTFVGLSGIIKYVEQLRKVGR-GTYDLLQALYFVLLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ L +SELV+ +A G S + + +I L + L+
Sbjct: 60 RDIEMFFPMAALLGALIGLGMLAASSELVVMQAAGFSKLDIGLSVLKTAIPLMVIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ DL G + W + +N FI KI +
Sbjct: 120 QWGAPQAQKMARDLRTISVAGGSIISTQSGVWARDAND----FIFIVKIDDD--KLYGLN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKVVEYQYGR--------IPIDKNSTTLNIP 231
D+ + + + ++ ++ V + +P T+L P
Sbjct: 174 MWRYDENKALKTAIYSKEVDYVGDNVWTMRDVEVTSFENEIQVTKESLPTFSWETSL-AP 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K+ E+ + Y+ + + S + R E + I P+ + M L+A
Sbjct: 233 DKLAIVTVKPEELSLSGLYDYVSYLKASEQ----DAARYELALWRKITQPISIAVMMLMA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
S RS + G+ +GF Y
Sbjct: 289 LSFIFGPLRSVTMGARILSGVIAGFTFYISSEFFG 323
>gi|15893122|ref|NP_360836.1| hypothetical protein RC1199 [Rickettsia conorii str. Malish 7]
gi|238650591|ref|YP_002916443.1| hypothetical protein RPR_03025 [Rickettsia peacockii str. Rustic]
gi|15620329|gb|AAL03737.1| unknown [Rickettsia conorii str. Malish 7]
gi|238624689|gb|ACR47395.1| hypothetical protein RPR_03025 [Rickettsia peacockii str. Rustic]
Length = 362
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 77/363 (21%), Positives = 153/363 (42%), Gaps = 9/363 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K Y K L + L+ + ++ ++ + + S L ++P
Sbjct: 4 LKTLSWYLTKLYSKCFFIILFLLIGLLIISNVFDLLQKFKNI-YVPFSFFWRLILYKIPY 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI ++N
Sbjct: 63 LLGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFTTILN 122
Query: 122 PIATSGEKIGI----DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
PI T G + L ++ G KS ++ + +++ Q I + I
Sbjct: 123 PIGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDETQ--IIQTQFINVAEKKLN 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ T + +D N + R DA II N + L +V + N+ T+ + ++
Sbjct: 181 NITILFVDHNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETK-AYNNLTMQTNLSINSL 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ S + + K ++ S + + +Y + P+M++A ++A+
Sbjct: 240 VNKFIRPEMVSIWALPKLINELLNSGL-PAINYQIYYYKQLFKPIMMMATVILASCFISL 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R N I+ G+FSGF+ Y++ I+ L +AA L+P +L +S I+L
Sbjct: 299 KQRDNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIMLH 358
Query: 358 KED 360
++
Sbjct: 359 YKE 361
>gi|157829030|ref|YP_001495272.1| hypothetical protein A1G_06555 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933754|ref|YP_001650543.1| hypothetical protein RrIowa_1403 [Rickettsia rickettsii str. Iowa]
gi|157801511|gb|ABV76764.1| hypothetical protein A1G_06555 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908841|gb|ABY73137.1| hypothetical membrane spanning protein [Rickettsia rickettsii str.
Iowa]
Length = 362
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 77/363 (21%), Positives = 154/363 (42%), Gaps = 9/363 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K Y K L + L+ + ++ ++ + + S L ++P
Sbjct: 4 LKTLSWYLTKLYSKCFFIILFLLIGLLIISNVFDLLQKFKNI-YVPFSFFLRLILYKIPY 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI ++N
Sbjct: 63 LLGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFTTILN 122
Query: 122 PIATSGEKIGI----DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
PI+T G + L ++ G KS ++ + +++ Q I + I
Sbjct: 123 PISTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDETQ--IIQTQFINVAEKKLN 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ T + +D N + R DA II N + L +V + N+ T+ + ++
Sbjct: 181 NITILFVDHNNSFLKRIDALYGIIENKMLHLSRVKVFTKEETK-AYNNLTMQTNLSINSL 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ S + + K ++ S + + +Y + P+M++A ++A+
Sbjct: 240 VNKFIRPEMVSIWALPKLINELLNSGL-PAINYQIYYYKQLFKPIMMMATVILASCFISL 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R N I+ G+FSGF+ Y++ I+ L +AA L+P +L +S I+L
Sbjct: 299 KQRDNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIMLH 358
Query: 358 KED 360
++
Sbjct: 359 YKE 361
>gi|240948567|ref|ZP_04752940.1| permease, inner membrane protein yjgQ [Actinobacillus minor NM305]
gi|240297075|gb|EER47646.1| permease, inner membrane protein yjgQ [Actinobacillus minor NM305]
Length = 360
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 76/365 (20%), Positives = 140/365 (38%), Gaps = 18/365 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY K L L + L +I E +G+ +Y A +P
Sbjct: 7 NVLERYIGKTILSAIFLTLFLLVGLGAIIKFVEEFKAVGK-GSYDALLAAYYTFLTIPRD 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++ P L+ +++ NL SELV+ +A G S +++ + ++ L +FT+++
Sbjct: 66 VETFFPIAALLGSLLGLGNLASRSELVVMQASGFSRFRIGLAVMKTAVPLILFTMIIGEW 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
E+ D+ + G + W + + F+ ++I E + +
Sbjct: 126 GVPQTEQYARDMRSVAQSGGSMLSTSGGFWAR----DGENFVYIRRIGSE-TQLNNLSIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI------DKNSTTLNIPIKMDG 236
DKK ++ A A ND LKKV + I D+ T P K+
Sbjct: 181 HFDKK-ELKSITQAAEAKYTNDSWILKKVEKSTIEGNSIKQSKEKDQPWQTSITPSKLGI 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E + + + + + + R E F+ + P+ + M L+A S
Sbjct: 240 VSLKPESLSITGLADYVGFLKETGQ----DPKRFEITFWRKVYQPISMAVMMLLAISFIF 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK-SGILLPVAAALIPVILTISLSILIL 355
RS+ + GI +GFM Y + + + L ALIP ++ +S+ +L
Sbjct: 296 GPLRSSTMGAKIVIGIVAGFMFYVANIVFGNMSLIATWLPVSIGALIPSLICLSIVWWLL 355
Query: 356 LQKED 360
+K D
Sbjct: 356 TKKRD 360
>gi|312142810|ref|YP_003994256.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
gi|311903461|gb|ADQ13902.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
Length = 366
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 62/367 (16%), Positives = 127/367 (34%), Gaps = 16/367 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ +Y +K + L+ + + DL + + L +P I
Sbjct: 2 KTVDKYIYKELIAPFLFGVAAFTGIFIGTDLIFEVTEYYIEWGVDVLTLLRLFFLSLPEI 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I P L+ I+ + L+ SE+ RA GISI ++ P ++ ++ T+ +
Sbjct: 62 IILTFPMAALLGTIMAYNRLSGDSEITAMRAGGISIMAIVLPALIMGLVTSGITIAITEF 121
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ---ISNPQQDIFIGAKKILPENHIWEDF 179
I +I Q+K + + ++ + D + AK EN D
Sbjct: 122 IVPGANYQAEQIIHQFKHGERRPDTQYDLFLTPLDSRTSRPDYMLYAKSFNAENGRMTDV 181
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR--------IPIDKNSTTLNIP 231
+ + + +A+ A+ D Y R ++ ++ P
Sbjct: 182 VLQSF-EDGRPRSVLEAEEALWLRDGWSFFNGTVYFLDREDRSPSLEFSQYRSREDIHSP 240
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ K ++ R E I + ++ Y +F+ +P+ L+A
Sbjct: 241 AQAGKLGKDIDEMNIRELNEHIALLEQQGRA----AYEERVEFHHRFSVPMASFIFALLA 296
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
A + ++ RS I F+ Y ++TI + G G + P A + I+ +
Sbjct: 297 APLGIKPQRSAGSATGFGISIIIIFIYYVLMTIGDALGSQGTIEPWLGAWLQNIIIFLVG 356
Query: 352 ILILLQK 358
+L +
Sbjct: 357 SGLLYKT 363
>gi|225075101|ref|ZP_03718300.1| hypothetical protein NEIFLAOT_00100 [Neisseria flavescens
NRL30031/H210]
gi|224953585|gb|EEG34794.1| hypothetical protein NEIFLAOT_00100 [Neisseria flavescens
NRL30031/H210]
Length = 356
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 64/363 (17%), Positives = 142/363 (39%), Gaps = 18/363 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY + +Y LL + L ++ +G+ +Y+ + A ++P
Sbjct: 3 LISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGK-GSYNGTTMAQYVLMQMPARA 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P L+ +V L SEL + +A G+S ++L ++ I T + I
Sbjct: 62 YELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKILLILSQFGLIFAIATATLGEWI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + ++ NG + W++ N I +++LP+ H
Sbjct: 122 APVLSQKAENIKAAA-INGKISTGNTGLWLKEKN----SIINVREMLPD-HTLLGIKIWA 175
Query: 184 IDKKNKIIHRKDADLAIIYN-DKVKLKKVVEYQYGRIPID-KNSTTLNIPIK-----MDG 236
+ KN++ +A+ A++ N +LK + ++ + N PI MD
Sbjct: 176 RNDKNELTQATEAESAVLNNDGSWQLKNIRRSTLSEDKVEVSTAAEENWPIAVKRNLMDV 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+Q + I + +N+ + ++ +V P+ M L+A + +
Sbjct: 236 LLVKPDQMSVGELTTYISHLENNNQ----NTQIYAIAWWRKLVYPVAAWVMALVAFAFTP 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ +R + + GI G + + + + +LP A +P +L L++ ++
Sbjct: 292 QTTRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVLPFLAGALPTVLFALLAVYLIR 351
Query: 357 QKE 359
+E
Sbjct: 352 CQE 354
>gi|34581207|ref|ZP_00142687.1| hypothetical protein [Rickettsia sibirica 246]
gi|28262592|gb|EAA26096.1| unknown [Rickettsia sibirica 246]
Length = 362
Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats.
Identities = 77/363 (21%), Positives = 153/363 (42%), Gaps = 9/363 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K Y K L + L+ + ++ ++ + + S L ++P
Sbjct: 4 LKTLSWYLTKLYSKCFFIILFLLIGLLIISNVFDLLQKFKNI-YVPFSFFWRLILYKIPY 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI ++N
Sbjct: 63 LLGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFTTILN 122
Query: 122 PIATSGEKIGI----DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
PI T G + L ++ G KS ++ + +++ Q I + I
Sbjct: 123 PIGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDKTQ--IIQTQFINVAEKKLN 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ T + +D N + R DA II N + L +V + N+ T+ + ++
Sbjct: 181 NITILFVDHNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETK-AYNNLTMQTNLSINSL 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ S + + K ++ S + + +Y + P+M++A ++A+
Sbjct: 240 VNKFIRPEMVSIWALPKLINELLNSGL-PAINYQIYYYKQLFKPIMMMATVILASCFISL 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R N I+ G+FSGF+ Y++ I+ L +AA L+P +L +S I+L
Sbjct: 299 KQRDNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIMLH 358
Query: 358 KED 360
++
Sbjct: 359 YKE 361
>gi|219871562|ref|YP_002475937.1| permease [Haemophilus parasuis SH0165]
gi|219691766|gb|ACL32989.1| permease, inner membrane protein yjgQ [Haemophilus parasuis SH0165]
Length = 355
Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats.
Identities = 68/365 (18%), Positives = 137/365 (37%), Gaps = 18/365 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + L + + L + L +I E +G +Y A +P
Sbjct: 2 NVLERYIGRTILASIMLTLFMLVGLGAIIKFVEEFRSVGR-GSYDGLHAAYYTLLTMPRD 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I+ P L+ +++ L SELV+ ++ G S +++ + +I L + T+++
Sbjct: 61 IETFFPIAALLGSLMGLGGLASRSELVVMQSAGFSRFRIGLAVMKTAIPLMVITMIMGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
E+ ++ + G + W + N FI ++I E + +
Sbjct: 121 GVPQTEQYARNMRSIAQSGGSMLATQGGFWAKDGND----FIYIRQIQDERN-LNNILIY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN------IPIKMDG 236
+ + + K A+ A L++V + + I + T P K+
Sbjct: 176 QFENQV-LKSIKQAEKATYSEQGWLLQQVDKSEIHESGITQTRETDQAWKTSITPSKLGI 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E + + + + + + + R E F+ + P+ + M L+A S
Sbjct: 235 VSLKPESLSISGLADYVGFLKDTGQ----DSKRFEITFWRKVFQPISMAVMMLLAISFIF 290
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK-SGILLPVAAALIPVILTISLSILIL 355
RS+ + GI +GF+ Y + + L ALIP +L +S+ +L
Sbjct: 291 GPLRSSTMGAKIVIGILAGFVFYVANIVFGNLSLIVSWLPVPIGALIPSLLCLSVVWWLL 350
Query: 356 LQKED 360
+K D
Sbjct: 351 NKKRD 355
>gi|257465008|ref|ZP_05629379.1| permease, inner membrane protein yjgQ [Actinobacillus minor 202]
gi|257450668|gb|EEV24711.1| permease, inner membrane protein yjgQ [Actinobacillus minor 202]
Length = 360
Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats.
Identities = 76/365 (20%), Positives = 140/365 (38%), Gaps = 18/365 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY K L L + L +I E +G+ +Y A +P
Sbjct: 7 NVLERYIGKTILSAIFLTLFLLVGLGAIIKFVEEFKAVGK-GSYDALLAAYYTFLTIPRD 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++ P L+ +++ NL SELV+ +A G S +++ + ++ L +FT+++
Sbjct: 66 VETFFPIAALLGSLLGLGNLASRSELVVMQASGFSRFRIGLAVMKTAVPLILFTMIIGEW 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
E+ D+ + G + W + + F+ ++I E + +
Sbjct: 126 GVPQTEQYARDMRSVAQSGGSMLSTSGGFWAR----DGENFVYIRRIGSE-TQLNNLSIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI------DKNSTTLNIPIKMDG 236
DKK ++ A A ND LKKV + I D+ T P K+
Sbjct: 181 HFDKK-ELKSITQAAEAKYTNDNWILKKVEKSTIEGNTIKQSKEKDQPWQTSITPSKLGI 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E + + + + + + R E F+ + P+ + M L+A S
Sbjct: 240 VSLKPESLSITGLADYVGFLKETGQ----DPKRFEITFWRKVYQPISMAVMMLLAISFIF 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK-SGILLPVAAALIPVILTISLSILIL 355
RS+ + GI +GFM Y + + + L ALIP ++ +S+ +L
Sbjct: 296 GPLRSSTMGAKIVIGIVAGFMFYVANIVFGNMSLIATWLPVSIGALIPSLICLSIVWWLL 355
Query: 356 LQKED 360
+K D
Sbjct: 356 TKKRD 360
>gi|67459625|ref|YP_247249.1| permease [Rickettsia felis URRWXCal2]
gi|67005158|gb|AAY62084.1| Predicted permeases [Rickettsia felis URRWXCal2]
Length = 362
Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats.
Identities = 76/361 (21%), Positives = 148/361 (40%), Gaps = 5/361 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K Y K L + L+ + ++ ++ + + S L ++P
Sbjct: 4 LKTLSWYLTKLYSKCFFIILFLLIGLLIISNIFDLLQKFKNI-YVPFSFFWRLILYKIPY 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI ++N
Sbjct: 63 LLGQVSSLISFTSMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLILGIVFTTILN 122
Query: 122 PIATSGEKIGIDLIQQ--WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
PI T G + L + K + S S ++ I + I +
Sbjct: 123 PIGTIGLQKYELLEAKLTKKTLSEGIISKSGLLFFESLKDENQIIQTQFINIAEKKLNNI 182
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T + +D N + R DA II N + L +V + N+ T+ + ++
Sbjct: 183 TILFVDSNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETKT-YNNLTIQTNLSINSLVN 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S + + K ++ S + + +Y + P+M++A ++A+
Sbjct: 242 KFIRPEMVSIWALPKLINELLNSGL-PAINYQIYYYKQLFKPIMMMATVILASCFISLKQ 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R N I+ G+FSGF+ Y++ I+ L +AA L+P +L +S I+L +
Sbjct: 301 RDNSQEKILILGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIILHYK 360
Query: 360 D 360
+
Sbjct: 361 E 361
>gi|302879721|ref|YP_003848285.1| permease YjgP/YjgQ family protein [Gallionella capsiferriformans
ES-2]
gi|302582510|gb|ADL56521.1| permease YjgP/YjgQ family protein [Gallionella capsiferriformans
ES-2]
Length = 358
Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats.
Identities = 66/365 (18%), Positives = 131/365 (35%), Gaps = 18/365 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + + ++L +D MG YS+ + +P
Sbjct: 2 NLLTRYLAREIYASIALVFAALIMLFAFLDFIGQLGTMG-YGQYSLGYVVLFVLLTIPGH 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I ++ P L+ IV + SEL I RA G S Q+L ++ + + + +
Sbjct: 61 IYELFPVAVLIGTIVALVQMAARSELTIYRASGASTGQMLGALSKIAVPMILLSFICGEL 120
Query: 123 IATSGEKIGIDLIQQWKD-NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA E++ L + + Q W++ F+ + ++P+ D
Sbjct: 121 IAPPSERLAQKLRLKALNTQVSLQAFRSGVWVK----DDASFVNVRSVMPD-TSLSDIDI 175
Query: 182 ITIDKKNKIIHRKDADLA-IIYNDKVKLKKVVEYQYGRIPIDKNSTTLN------IPIKM 234
T DK + A A + +L V+E + + S + P +
Sbjct: 176 YTFDKSFHMNSVIRAKRASYLEPGVWQLHDVLETSFAARGVSTKSMPVREWQSALTPGIL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
EQ ++ Y+ + + + + R E + +V P L+ M ++A
Sbjct: 236 SVMLVVPEQMSALDLYKYASHLKENKQQSA----RYEIAMWNKLVYPFALLVMMVLALPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ R+ I+V GI G + + ++ S G P+ +A + + + +
Sbjct: 292 ASYQRRAGGVSILVFMGIVLGLVFHFAGRLVGSLGSLNDWQPLFSATAMTGVFLLIGAFM 351
Query: 355 LLQKE 359
L + E
Sbjct: 352 LWRVE 356
>gi|220932597|ref|YP_002509505.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
gi|219993907|gb|ACL70510.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
Length = 1040
Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats.
Identities = 81/366 (22%), Positives = 157/366 (42%), Gaps = 24/366 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP---NYSISRGAVLAATRVPLII 63
R Y +K LY L + ++ VI L+ + Q+ +L ++ L ++P II
Sbjct: 8 RIIDVYIIKEVLYPFLIGVSIIGVIMLSGLLRQLSDLIIIKKIPVAVVLKLLLYQLPEII 67
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q P L + LNR +E R GIS+++L+ P ++ I++ T L+ I
Sbjct: 68 VQTFPIAILFATMSGMGRLNRENEFTALRMGGISLYRLILPLLILGIVISGMTYLLNEEI 127
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++I++ + DI + P +F + E++I + T
Sbjct: 128 VPWTKHRAQNIIRK--SVLKEVPPDIKENVFFKGPDGRLF-YVGRFDKEDNIMKKIVVYT 184
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GRIPIDKNSTTLNIPIKMD----- 235
N A+L +Y +K LKK ++Y G + ++ + I I +
Sbjct: 185 FKGDNGYPLIVTANLGEVYKEKWVLKKGFIHRYNGEGHLTMETRFDVMEIKINTEVHNFF 244
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
QK ++ + + I +++ + ++ + +PL + LI +S
Sbjct: 245 ADQKTPDEMSREELKKEIDLF----QNSGIDVHSLLVDYHLKLSMPLAALIFILIGTPLS 300
Query: 296 L--EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
L + SRS + + I F+ Y ++++ +SFG++G L PV AA +P I+ + I
Sbjct: 301 LTSKDSRS----FSIIFTIVVVFLYYFVMSLSRSFGRNGRLDPVLAAWLPNIIFSIIGIT 356
Query: 354 ILLQKE 359
+L+ +E
Sbjct: 357 LLIWRE 362
>gi|157826222|ref|YP_001493942.1| hypothetical protein A1C_06005 [Rickettsia akari str. Hartford]
gi|157800180|gb|ABV75434.1| hypothetical protein A1C_06005 [Rickettsia akari str. Hartford]
Length = 362
Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats.
Identities = 77/363 (21%), Positives = 152/363 (41%), Gaps = 9/363 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K Y K L L ++L+ + ++ ++ + + S L ++P
Sbjct: 4 LKTLSWYLAKLYSKCFLVILFLLIVLLIISNIFDLLQKFKNI-YVPFSFFWRLILYKIPY 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI ++N
Sbjct: 63 LLGQVCSLISFTAMLFFLSNLTKNNELTAMLSSGIHIWQVLVIPCIVTLILGIVFTTILN 122
Query: 122 PIATSGEKIGI----DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
PI T G + L ++ G KS ++ + ++ Q I + I
Sbjct: 123 PIGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNGENQ--IIQTQFINVAEKKLN 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ T + +D N + R DA II N + LK+V N+ T+ + ++
Sbjct: 181 NITILFVDSNNSFLKRIDALYGIIENKMLHLKRVKVCTKEETK-AYNNLTIQTNLSINSL 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ S + + K ++ ++ + +Y + P+M++A ++A+
Sbjct: 240 VNKFIRPEMVSIWSLPKLINEL-FNSGLPAINYQIYYYKQLFKPIMMMATVILASCFISL 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R N I+ G+F GF+ Y++ I+ L AA L+P +L +S I+L
Sbjct: 299 KQRDNSQEKILILGLFLGFIAYSLSEILLKILTYNNLSLTAAILLPSMLIFFISNFIILH 358
Query: 358 KED 360
++
Sbjct: 359 YKE 361
>gi|229587132|ref|YP_002845633.1| Putative permease [Rickettsia africae ESF-5]
gi|228022182|gb|ACP53890.1| Putative permease [Rickettsia africae ESF-5]
Length = 362
Score = 189 bits (480), Expect = 7e-46, Method: Composition-based stats.
Identities = 77/363 (21%), Positives = 152/363 (41%), Gaps = 9/363 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K Y K L + L+ + ++ ++ + + S L ++P
Sbjct: 4 LKTLSWYLTKLYSKCFFIILFLLIGLLIISNVFDLLQKFKNI-YVPFSFFWRLILYKIPY 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI ++N
Sbjct: 63 LLGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFTTILN 122
Query: 122 PIATSGEKIGI----DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
PI T G + L ++ G KS ++ + +++ Q I + I
Sbjct: 123 PIGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDETQ--IIQTQFINVAEKKLN 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ T + +D N + R DA II N + L +V + N+ T+ + ++
Sbjct: 181 NITILFVDHNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETK-AYNNLTMQTNLSINSL 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ S + + K + S + + +Y + P+M++A ++A+
Sbjct: 240 VNKFIRPEMVSIWALPKLIHELLNSGL-PAINYQIYYYKQLFKPIMMMATVILASCFISL 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R N I+ G+FSGF+ Y++ I+ L +AA L+P +L +S I+L
Sbjct: 299 KQRDNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIMLH 358
Query: 358 KED 360
++
Sbjct: 359 YKE 361
>gi|91203264|emb|CAJ72903.1| hypothetical protein kustd2158 [Candidatus Kuenenia
stuttgartiensis]
Length = 357
Score = 188 bits (479), Expect = 8e-46, Method: Composition-based stats.
Identities = 73/365 (20%), Positives = 145/365 (39%), Gaps = 25/365 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K + T LL +IDL + + E+ S + A P
Sbjct: 1 MFSRLDRYLLKAFFPTFFLCLLIISGTYVIIDLLQKLDDFLEMGINSFGVASRYYAYLFP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+II Q P ITLV +V L+R E++ + GIS++++L P V ++ +G +
Sbjct: 61 VIITQFFPAITLVAVGIVLVRLSRNKEILAMQVAGISLYRILLPIFVVTVFMGFASFGDQ 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I + L ++ D + + + + + I K + +
Sbjct: 121 EWIVP---RFAEKLEAMQQNTFDSDVQRNLL---VHDDENNALIRIWKYSNKTQKMDSVF 174
Query: 181 SITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGR-----IPIDKNST----TLNI 230
++ D+ K +A A N+ L K++++ Y P+ + T +
Sbjct: 175 ILSRDENGKKRFTLNAKKAEWIGNNTWVLSKILKHVYDERGRWVAPVHRLDTLEFVSSVT 234
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P+++ + S + E+ +K + K+ + F+ I L + + +
Sbjct: 235 PLELGKKKLDSSLLSLEQLNELCEKEPDNPKN--------KVLFHSRIAYTLTHIVLLFL 286
Query: 291 AASVSLEFSRSN-QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+ + F R + + V+ I + + Y + I + G +G++ PV AA +P++L S
Sbjct: 287 GIPLVVGFERMSKNIFLRVSLCILACGVFYAVSFICSNLGNTGMVHPVLAAWMPIVLFGS 346
Query: 350 LSILI 354
+ I
Sbjct: 347 VGIFF 351
>gi|240014488|ref|ZP_04721401.1| hypothetical protein NgonD_07558 [Neisseria gonorrhoeae DGI18]
gi|240121010|ref|ZP_04733972.1| hypothetical protein NgonPI_04426 [Neisseria gonorrhoeae PID24-1]
Length = 356
Score = 188 bits (479), Expect = 8e-46, Method: Composition-based stats.
Identities = 61/361 (16%), Positives = 137/361 (37%), Gaps = 12/361 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + + LL + L ++ +G+ +Y I A ++P
Sbjct: 2 NLISRYIIRQMAVMAVCALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ + L SEL + +A G+S +LL + I V +
Sbjct: 61 AYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + ++ NG W++ N I + +LP+ H
Sbjct: 121 VAPTLSQKAENIKAAA-INGKISTDHTGLWLKEKN----SIINVRGMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
+ KN++ +AD A++ + +LK + G I+ ++ T I ++ +
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + ++N + ++ +V P+ M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHL-QNNSQNTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAGALPTIAFALLAVWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|240079726|ref|ZP_04724269.1| hypothetical protein NgonF_00194 [Neisseria gonorrhoeae FA19]
gi|268595872|ref|ZP_06130039.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|293399674|ref|ZP_06643826.1| hypothetical protein NGNG_01869 [Neisseria gonorrhoeae F62]
gi|268549660|gb|EEZ44679.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|291609925|gb|EFF39048.1| hypothetical protein NGNG_01869 [Neisseria gonorrhoeae F62]
Length = 356
Score = 188 bits (479), Expect = 9e-46, Method: Composition-based stats.
Identities = 62/361 (17%), Positives = 139/361 (38%), Gaps = 12/361 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ + L SEL + +A G+S +LL + I V +
Sbjct: 61 AYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + ++ NG + W++ N I + +LP+ H
Sbjct: 121 VAPTLSQKAENIKAAA-INGKISTGNTGLWLKEKN----SIINVRGMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
+ KN++ +AD A++ + +LK + G I+ ++ T I ++ +
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + ++N + ++ +V P+ M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHL-QNNSQNTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAGALPTIAFALLAVWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|288940379|ref|YP_003442619.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
gi|288895751|gb|ADC61587.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
Length = 354
Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 70/360 (19%), Positives = 138/360 (38%), Gaps = 16/360 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + TL L G + L+ V L++ + +G Y ++ + +P +
Sbjct: 3 ILDRYLAWAVMSGTLLTLAGLLPLMGVFILSDELDAIGT-ERYGLAEAMLFTLLSLPRYL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+ P TL+ ++ L SELV RA GIS+ +L+ ++G ++L V++ +
Sbjct: 62 YQLFPIATLIGALIGLGTLASRSELVAMRAAGISVGRLVRAALLGGLVLATIAVVLGELV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E+ ++L + Q + W +I + + D
Sbjct: 122 APIAEQRAVELRRLALSGEAAQLTPYGFWAIDDGAYVNI-----REIRSGTSLRDIDIYR 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID------KNSTTLNIPIKMDGF 237
+D + A+ A + + L+ + + + ++ P +
Sbjct: 177 VDAAAGTLEASHAEGARYEDGRWVLEGIALSRVDGEGVQVERVEHAEWDSMLDPGLLKVV 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Y+ I+ MS + + E F+ ++ P++ ++M LIA + L
Sbjct: 237 VADPRALPVWGLYKYIRFMSVNKQ----DASAYEIAFWSKVLHPVLTLSMILIAIPMLLG 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
SRS + GI G + Y + + AA+ P +L I ++L+L +
Sbjct: 293 SSRSTGMGRRMLAGILVGLVYYLVSRTFAYLALLFGMNAFLAAIAPPVLFIGAAMLLLRR 352
>gi|194097860|ref|YP_002000905.1| hypothetical protein NGK_0280 [Neisseria gonorrhoeae NCCP11945]
gi|239998341|ref|ZP_04718265.1| hypothetical protein Ngon3_02528 [Neisseria gonorrhoeae 35/02]
gi|240016934|ref|ZP_04723474.1| hypothetical protein NgonFA_07156 [Neisseria gonorrhoeae FA6140]
gi|240117143|ref|ZP_04731205.1| hypothetical protein NgonPID_01565 [Neisseria gonorrhoeae PID1]
gi|240127074|ref|ZP_04739735.1| hypothetical protein NgonS_00193 [Neisseria gonorrhoeae SK-93-1035]
gi|268594203|ref|ZP_06128370.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268602831|ref|ZP_06136998.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268685429|ref|ZP_06152291.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|193933150|gb|ACF28974.1| Conserved hypothetical integral membrane protein [Neisseria
gonorrhoeae NCCP11945]
gi|268547592|gb|EEZ43010.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268586962|gb|EEZ51638.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268625713|gb|EEZ58113.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|317163630|gb|ADV07171.1| hypothetical protein NGTW08_0197 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 356
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 61/361 (16%), Positives = 137/361 (37%), Gaps = 12/361 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + + LL + L ++ +G+ +Y I A ++P
Sbjct: 2 NLISRYIIRQMAVMAVCALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ + L SEL + +A G+S +LL + I V +
Sbjct: 61 AYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + ++ NG W++ N I + +LP+ H
Sbjct: 121 VAPTLSQKAENIKAAA-INGKISTGHTGLWLKEKN----SIINVRGMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
+ KN++ +AD A++ + +LK + G I+ ++ T I ++ +
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + ++N + ++ +V P+ M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHL-QNNSQNTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAGALPTIAFALLAVWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|51473938|ref|YP_067695.1| hypothetical protein RT0756 [Rickettsia typhi str. Wilmington]
gi|51460250|gb|AAU04213.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
Length = 362
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 77/361 (21%), Positives = 151/361 (41%), Gaps = 5/361 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K Y K L ++L+ + ++ ++ + + S ++P
Sbjct: 4 LKTLSLYLTKLYSKCFFIILFLLIVLLIISNIFDLLQKFKNI-YVPFSFFWRFILYKIPY 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q+ I+ + NL +++EL+ + GI IWQ+L + +++LGI ++N
Sbjct: 63 LLTQVSSLISFTSMLFFLRNLTKSNELIAILSSGIHIWQVLIIPCIVTLILGIICTTLLN 122
Query: 122 PIATSGEKIGIDLIQQ--WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
PI+T G + L + K S+ S + + I + I +
Sbjct: 123 PISTIGLQKYAILEAKLTKKALSGGLISESGLLFFESLNEHNQIIQTQFIDVAEQKLNNI 182
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T + ID N + R DA II N K+ L +V N+ T+ + ++
Sbjct: 183 TILFIDNNNSFLKRIDALYGIIKNKKLYLNRVKVSMKDETK-SYNNLTIQTNLSINSLVN 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S + + K ++ S + + +Y + P+M++A ++A+
Sbjct: 242 KFMRPEMVSIWALPKLINELLNSGL-SAINYQIYYYKQLFKPIMMMATVILASCFISLKQ 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R N I+ G+FSGF+ Y++ I+ L +AA L+P +L +S I+L +
Sbjct: 301 RCNAQEKILILGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSLLIFFISNFIILHYK 360
Query: 360 D 360
+
Sbjct: 361 E 361
>gi|237653448|ref|YP_002889762.1| permease YjgP/YjgQ family protein [Thauera sp. MZ1T]
gi|237624695|gb|ACR01385.1| permease YjgP/YjgQ family protein [Thauera sp. MZ1T]
Length = 358
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 52/363 (14%), Positives = 122/363 (33%), Gaps = 11/363 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY + + L+ + L D +G+ Y++ + V +P
Sbjct: 1 MSPVLLRYLAREIFAASALVLVAFLGLFAFFDFINELEDVGK-GGYTLYQALVYVGLTLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ + L + SE+ + RA G+S L + + + + LV
Sbjct: 60 ARVYELMPIAVLIGTLYALATLAKNSEITVMRASGMSNALLTSVLGLIGGVFAVLIFLVG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A E + Q+ W++ + + + ++P+
Sbjct: 120 EYVAPPAEAAAEEWKLTATQATVSQQLRSGLWVK----DGRLVLNVRTLMPDRS-MRGAR 174
Query: 181 SITIDKKNKIIHRKDADLAIIYN-DKVKLKKV--VEYQYGRIPIDK-NSTTLNIPIKMDG 236
D+ + +A + + KL V + R I++ + +
Sbjct: 175 IYAFDEDYALESIAEAATGVFDGSGEWKLLDVQRTRFHGDRTEIERLPEIRWRSELTPEV 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F + ++ + N + R E + ++ P + M +A
Sbjct: 235 LGVLMVSPEHMPFGRLWTYINHL-RDNNQNADRFEIALWKKLIYPFTALVMMALAMPFGF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + G+ G + + + + G P AAL P ++ ++ + ++
Sbjct: 294 IHDRMGGASARIFMGVMLGVGFHLLNGLFSNLGMINAWPPFMAALTPSLIFLAAAFWLMH 353
Query: 357 QKE 359
+ E
Sbjct: 354 RVE 356
>gi|313892370|ref|ZP_07825962.1| permease, YjgP/YjgQ family [Dialister microaerophilus UPII 345-E]
gi|329121341|ref|ZP_08249967.1| YjgP/YjgQ family permease [Dialister micraerophilus DSM 19965]
gi|313119229|gb|EFR42429.1| permease, YjgP/YjgQ family [Dialister microaerophilus UPII 345-E]
gi|327469750|gb|EGF15216.1| YjgP/YjgQ family permease [Dialister micraerophilus DSM 19965]
Length = 361
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 71/359 (19%), Positives = 131/359 (36%), Gaps = 8/359 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K +L L+ + + D S + +P II
Sbjct: 3 ILDKYILKEFLGPFLFGVAAFTAIFLGSDTLLSIAGFITKYGASSLSAIKIFILAIPRII 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ +L+ SEL++ R G S +L P + S ++ I + +
Sbjct: 63 VYTFPMAVLLGALMCMSSLSGASELIVMRNSGQSFLRLAMPIFIFSAIISICAIAFNEFV 122
Query: 124 ATSGEKIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ ++ + K N + D I I + I AKK PE +D T
Sbjct: 123 VPWTNREYQYILDVEIKKNLNPDIVDNIVMKDIQDGNLLHLIYAKKYNPETKELKDITIQ 182
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG----RIPIDKNSTTLNIPIKMDGFQ 238
K K + + + A+ K+ V Y + +S + K D +
Sbjct: 183 EF-KDGKPVKIEMSPKAVWKEGVWDFKQGVAYDITPDGVEHKLSFDSQAVPFIQKPDEIK 241
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ KK + KS + + +P+ + +I A + +
Sbjct: 242 NSNNNVGEMSISEL-KKTADLLKSANQDPTSFYMEIHKRFSLPIASLVFAIIGAPLGIRK 300
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS+ + F+ Y ++T M++ G+ IL P AA +P ILT + ++ +
Sbjct: 301 QRSSSSIGFGIS-VIVIFIYYAVMTFMEAMGEGHILPPFAAVWLPDILTFLIGCYLVRR 358
>gi|319789792|ref|YP_004151425.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
gi|317114294|gb|ADU96784.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
Length = 354
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 78/362 (21%), Positives = 149/362 (41%), Gaps = 12/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY F +K L + L VID N + + S A R+P
Sbjct: 1 MIKKLDRYVFSEGVKFFFLTLTTFLTLFAVIDFVSHFNMVSK---VGASGAAAYILGRLP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L ++IP TL+ +V + TSEL ++RA+GIS ++ P V+ +L + +V V
Sbjct: 58 LYGVRVIPIATLIATMVTLSRFSETSELTVARALGISTYRFSAPLVILGVLASVASVAVQ 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ +G K ++ + + + W + F+ ++LP+N E
Sbjct: 118 ETLLPAGLKRATEIALKAGEEVTNGPQKVPGVWFKDRAGD---FVFFWELLPKNKRAERV 174
Query: 180 TSITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRI-PIDKNSTTLNIPIKMDGF 237
+ I + K R DA+ AI + L++V + + +K + +N+ + +
Sbjct: 175 SIIKV-KDFSPTGRIDAEEAIYKGGGRWLLREVFVRDFKELKSTEKETLPINLGVSVKEL 233
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ E+ + +K N + + Y + + L+ V +I +
Sbjct: 234 LLSVNNPEAMGLLELFLTIKRLSKLN-YDTNYLRVELYSKLALGLLPVITAIIGIPFGVY 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ + ++ I M T+ + S GKS +L P+ AA P++L ++ + +L +
Sbjct: 293 NPRNKKGYTVLLAAIIVVSMWITVS-LFLSLGKSEVLPPLYAAFAPLLLFGAVGLFLLGR 351
Query: 358 KE 359
E
Sbjct: 352 VE 353
>gi|240113704|ref|ZP_04728194.1| hypothetical protein NgonM_09087 [Neisseria gonorrhoeae MS11]
gi|240116445|ref|ZP_04730507.1| hypothetical protein NgonPID1_09468 [Neisseria gonorrhoeae PID18]
gi|240122359|ref|ZP_04735315.1| hypothetical protein NgonP_00180 [Neisseria gonorrhoeae PID332]
gi|240125093|ref|ZP_04737979.1| hypothetical protein NgonSK_02542 [Neisseria gonorrhoeae SK-92-679]
gi|254494458|ref|ZP_05107629.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|260441667|ref|ZP_05795483.1| hypothetical protein NgonDG_11387 [Neisseria gonorrhoeae DGI2]
gi|268599772|ref|ZP_06133939.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268602117|ref|ZP_06136284.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268680946|ref|ZP_06147808.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268683688|ref|ZP_06150550.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|291045047|ref|ZP_06570755.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|226513498|gb|EEH62843.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268583903|gb|EEZ48579.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268586248|gb|EEZ50924.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268621230|gb|EEZ53630.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268623972|gb|EEZ56372.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|291011050|gb|EFE03047.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
Length = 356
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 62/361 (17%), Positives = 138/361 (38%), Gaps = 12/361 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ + L SEL + +A G+S +LL + I V +
Sbjct: 61 AYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + ++ NG W++ N I + +LP+ H
Sbjct: 121 VAPTLSQKAENIKAAA-INGKISTGHTGLWLKEKN----SIINVRGMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
+ KN++ +AD A++ + +LK + G I+ ++ T I ++ +
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + ++N + ++ +V P+ M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHL-QNNSQNTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAGALPTIAFALLAVWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|157964920|ref|YP_001499744.1| putative permease [Rickettsia massiliae MTU5]
gi|157844696|gb|ABV85197.1| Putative permease [Rickettsia massiliae MTU5]
Length = 370
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 74/361 (20%), Positives = 147/361 (40%), Gaps = 5/361 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K Y K L + L+ + ++ ++ + + S L ++P
Sbjct: 12 LKTLSWYLTKLYFKCFFIILFLLIGLLIISNIFDLLQKFKNI-YVPFSFFWRLILYKIPY 70
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI ++N
Sbjct: 71 LLGQVSSLISFSAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLMLGIVFTTILN 130
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQK--SDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
PI T G + L + + S + ++ I + I +
Sbjct: 131 PIGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFEALNDENQIIQTQFINVAEKKLNNI 190
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T + +D N + R DA II N + L +V + N+ T+ + ++
Sbjct: 191 TILFVDHNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETK-AYNNLTIQTNLSINSLVN 249
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S + + K ++ S + + +Y + P+M++A ++A+
Sbjct: 250 KFIRPEMVSIWVLPKLINELLNSGL-PVINYQIYYYKQLFKPIMMMATVILASCFISLKQ 308
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R N I+ G+FSGF+ Y++ I+ L +AA L+P +L +S I+L +
Sbjct: 309 RDNSQEKILLLGLFSGFIAYSLSEILLKILTYNNLSLIAAILLPSMLIFFISNFIMLHYK 368
Query: 360 D 360
+
Sbjct: 369 E 369
>gi|56751017|ref|YP_171718.1| hypothetical protein syc1008_d [Synechococcus elongatus PCC 6301]
gi|81299323|ref|YP_399531.1| hypothetical protein Synpcc7942_0512 [Synechococcus elongatus PCC
7942]
gi|56685976|dbj|BAD79198.1| hypothetical protein YCF84 [Synechococcus elongatus PCC 6301]
gi|81168204|gb|ABB56544.1| conserved hypothetical protein YCF84 [Synechococcus elongatus PCC
7942]
Length = 394
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 52/371 (14%), Positives = 127/371 (34%), Gaps = 19/371 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY + L L+ + + I + + +S A + ++P
Sbjct: 27 ISIMDRYILREMLGPFLFGVGAFTSVGLSIGVVFELVRQVTEAGLPLSVAAQVFLLKMPD 86
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P L+ ++ + L+ SEL+ R+ GIS ++ + P ++ SI++ T
Sbjct: 87 FLVLAFPMSMLLSALMAYNRLSSDSELIALRSCGISSYRFILPGILMSIVVTGMTFAFYE 146
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI----SNPQQDIFIGAKKILPENHIWE 177
+ + +Q + Q + + + A++ +
Sbjct: 147 SVVPAANFQAQVTLQTALNQTRPQLEEKNNIVYQQFDRKTSELARIFYARRY--DGEQMR 204
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYG--------RIPIDKNSTT 227
T + + ++ A+ + + + + Y + T
Sbjct: 205 GLTILDFTR-GELSQIISAETGVWHPGDQLWEFRNGTIYGVAPDGSYSGIATFKSQEFTI 263
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
P+ + + Q + ++ ++ + +N N + E + + +P + VA
Sbjct: 264 PETPLSIASQSRDETQMNATQIWQYLRVLRQTN--NTADIRKWEVRLQQKLALPFVCVAF 321
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
LI AS+ ++ + F Y + + + G +G L + A P +L
Sbjct: 322 GLIGASLGTAPNQRTGRATGFGISVLIIFSYYLLAFVTGALGINGTLPTLLAGWFPWLLG 381
Query: 348 ISLSILILLQK 358
+ + + +L Q
Sbjct: 382 MGVGLYLLRQT 392
>gi|238023197|ref|ZP_04603623.1| hypothetical protein GCWU000324_03124 [Kingella oralis ATCC 51147]
gi|237865580|gb|EEP66720.1| hypothetical protein GCWU000324_03124 [Kingella oralis ATCC 51147]
Length = 355
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 56/364 (15%), Positives = 138/364 (37%), Gaps = 19/364 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY K + Y L + L IDL + +G+ Y++ ++P
Sbjct: 2 NLITRYLIKRLAVASCYALFAILALYSFIDLISETSVVGQN-QYTLWVATQYILMQMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
Q++P TL+ +V L SEL + + G+S ++ + S + I TVL+
Sbjct: 61 AYQLMPLATLIGGLVALNQLANNSELAVIKTSGLSTANIIGIIIKFSAIFAIATVLLGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + G ++ + + W++ I +LP+N
Sbjct: 121 LAPELSRRGDEMKANARAGHIAAAHN-GIWIKQPG----SMINVASMLPDNT-LVGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY-------QYGRIPIDKNSTTLNIPIKMD 235
+ + ++ A+ A + N +L Q + + T + P+ ++
Sbjct: 175 HYNDQFQLTEAISAEKATVANGAWQLHNTHSTTLADNHAQPQQQAEREWQTDIGKPL-LN 233
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
EQ + + + I+ + +++ + ++ ++ P+ + M L+A + +
Sbjct: 234 VLLVKPEQMSFTALTQYIRYLKENHQQ----TQAYDVAWWNKLIYPIATMVMALVALAFT 289
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + GI G + + + + + + +A++P ++ ++
Sbjct: 290 PNSGRHSNMGLKLFGGICLGLLFFFTGRLFGFTTQLYGVPAMLSAILPTAAFGCWAMYLI 349
Query: 356 LQKE 359
++E
Sbjct: 350 RKQE 353
>gi|59801588|ref|YP_208300.1| hypothetical protein NGO1229 [Neisseria gonorrhoeae FA 1090]
gi|59718483|gb|AAW89888.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
Length = 356
Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 61/361 (16%), Positives = 138/361 (38%), Gaps = 12/361 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ + L SEL + +A G+S +LL + I V +
Sbjct: 61 AYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + ++ NG + W++ I + +LP+ H
Sbjct: 121 VAPTLSQKAENIKAAA-INGKISTGNTGLWLKEKT----SIINVRGMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQ 238
+ KN++ +AD A++ + +LK + G I+ ++ T I ++ +
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNLMD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S E+ + ++N + ++ +V P+ M L+A + + +
Sbjct: 235 VLLVKPDQMSVGELTTYIRHL-QNNSQNTQIYAIAWWRKLVYPVAAWVMALVAFAFTPQT 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+R + + GI G + + + + P A +P I L++ ++ ++
Sbjct: 294 TRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAGALPTIAFALLAVWLIRKQ 353
Query: 359 E 359
E
Sbjct: 354 E 354
>gi|110596903|ref|ZP_01385193.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
gi|110341590|gb|EAT60050.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
Length = 359
Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 63/357 (17%), Positives = 133/357 (37%), Gaps = 10/357 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY F+ + K ++ + L +I + E + M N SI + +P
Sbjct: 2 KILDRYIFRQFAKAFIFTSTTFVFLFILITMVEHLDDMMGR-NLSIFQIIGYYLLSIPST 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P +L+ +I+V L+ +SEL R+ G+S+ QLL PF+ G+ + ++
Sbjct: 61 VLVTAPVSSLLASILVAGRLSASSELSAIRSAGVSMRQLLYPFLAGASFIAAVNLVNSCW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA + ++ + + I Q + + + + + +
Sbjct: 121 IAPAAFSGIARFEREHLSKEPGKLPENRNMHLI--EQGNRIVSIGSMGSDESTGKAVSIE 178
Query: 183 TIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGF 237
++ R DA + L+ + + + + I
Sbjct: 179 EF-SGAHLVSRIDAASMSYNPKSGEWMLENAAIRSFTGGSEQYSFIGRKPVKLSISPRSL 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+F+ Q + + ++ ++ I R+ +FY + +P + + LI +S +
Sbjct: 238 LEFNLQPDEMNVSRHYRYLTEKRQAGISGLDRSAVKFYTKLSLPFASLIVMLIGVPLSAK 297
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + +F GF+ + + G G + P AA +P I+ + + LI
Sbjct: 298 KKR-GGLASEITIALFFGFLFIGLQKTVAIAGYQGAMNPALAAWLPNIIFLIVGYLI 353
>gi|239946701|ref|ZP_04698454.1| permease, YjgP/YjgQ family [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239920977|gb|EER21001.1| permease, YjgP/YjgQ family [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 362
Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 76/363 (20%), Positives = 153/363 (42%), Gaps = 9/363 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K Y K L + L+ + ++ ++ + + S L ++P
Sbjct: 4 LKTLSWYLTKLYSKCFFIILFLLIGLLIISNIFDLLQKFKNI-YVPFSFFWRLILYKIPY 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q+ I+ + NL + +EL + GI IWQ+L + +++LGI + ++N
Sbjct: 63 LLGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLILGIVFMTILN 122
Query: 122 PIATSGEKIGI----DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
PI T G + L ++ G KS ++ + +++ Q I + I
Sbjct: 123 PIGTIGLQKYELLEAKLTKKALSEGIISKSGLLFFESLNDENQ--IIQTQFINVAEKKLN 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ T + +D N + R DA II N + L +V + N+ T+ + ++
Sbjct: 181 NITILFVDSNNSFLKRIDALYGIIENKMLHLNRVKVFTKEETK-AYNNLTIQANLSINSL 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ S + + K ++ S + + +Y + P+M++A ++A+
Sbjct: 240 VNKFIRPEMVSIWALPKLINELLNSGL-PAINYQIYYYKQLFKPIMMMATVILASCFISL 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R N I+ G+FSGF+ Y++ I+ L + A L+P +L +S I+L
Sbjct: 299 KQRDNSQEKILILGLFSGFIAYSLSEILLKILTYNNLSLITAILLPSMLIFFISNFIILH 358
Query: 358 KED 360
++
Sbjct: 359 YKE 361
>gi|254481253|ref|ZP_05094498.1| putative permease, YjgP/YjgQ family [marine gamma proteobacterium
HTCC2148]
gi|214038416|gb|EEB79078.1| putative permease, YjgP/YjgQ family [marine gamma proteobacterium
HTCC2148]
Length = 353
Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 128/359 (35%), Gaps = 17/359 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L R+ L L + L + + + + + Y+ + + +P +
Sbjct: 4 LDRHVGWTVFVAILLVLAIIVGLDAIAAFIDEADDISK--TYTFGQVGLYILLTLPGRLY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ IPF L+ ++ L +SELV+ RA G+S +L+ + ++L+ I + +A
Sbjct: 62 EFIPFAALIGCMLGLGQLATSSELVVMRAAGVSTGRLVWVAMKPALLIAIMGFSLGEFVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E++ ++ G+ W N + + F+ + + T +
Sbjct: 122 PETEQMAETQRALAQNPGESFGGRYGIW----NREGNTFLHFNAVEAGG-VVHGITMLEF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS------TTLNIPIKMDGFQ 238
D+ + + A A ++ V + + + T P +
Sbjct: 177 DEDLLMEYSLRARRASFEGGYWTMEDAVLTNFSSWQTTRETHEVMRWDTGITPELLTVMA 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
E Y + + +S + + + I+ P + A+ L+A S
Sbjct: 237 VEPEYLPISDLYRFSRYL----QSQGLDSDDYQLALWGKILQPAAIGALVLVAISFIFGP 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + G+ G + T ++ P+ AAL+P++L + +L+LL+
Sbjct: 293 LREGTMGFRIFAGVIVGIVFRTSQDLLGPASLVFGFAPIYAALVPILLCGAAGMLLLLR 351
>gi|157804140|ref|YP_001492689.1| hypothetical protein A1E_04940 [Rickettsia canadensis str. McKiel]
gi|157785403|gb|ABV73904.1| hypothetical protein A1E_04940 [Rickettsia canadensis str. McKiel]
Length = 333
Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats.
Identities = 71/338 (21%), Positives = 139/338 (41%), Gaps = 8/338 (2%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
MI+ + DL + + S L ++P ++ Q+ I+ + NL +
Sbjct: 1 MIISNIFDLLQKFKNI----YVPFSFFWRLILYKIPYLLGQVSSLISFTAMLFFLSNLTK 56
Query: 85 TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDK 144
+EL + + G+ IWQ+L + +++LGI ++NPI T G + L +
Sbjct: 57 NNELTVILSSGVHIWQVLVSPCIVTLILGIVFTTILNPIGTIGLQKYELLEAKLTKKALS 116
Query: 145 QK--SDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY 202
S S + I + I + T + +D N + R DA II
Sbjct: 117 DGIISKSGLLFFESLNDANQIIQTQFINVAEKKLNNITVLFVDSNNSFLKRIDALYGIIE 176
Query: 203 NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS 262
N + L +V + N+ T+ + ++ + S + + K ++ S
Sbjct: 177 NKMLHLNRVKVFTKEETK-AYNTLTIQTNLSINSLVNKFSRPDMVSIWALPKLINELLNS 235
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
+ + +Y + P+M++A ++A+ R+N I+ G+FSGF+ Y++
Sbjct: 236 GL-PAINYQIYYYKQLFKPIMMMATVILASCFISLKQRNNSQEKILILGLFSGFIAYSLS 294
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
I+ L +AA L+P +L +S I+L ++
Sbjct: 295 EILLKILAYNNLSLIAAILLPSMLIFFISNFIILHYKE 332
>gi|322514885|ref|ZP_08067902.1| YjgP/YjgQ family membrane protein [Actinobacillus ureae ATCC 25976]
gi|322119139|gb|EFX91289.1| YjgP/YjgQ family membrane protein [Actinobacillus ureae ATCC 25976]
Length = 360
Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats.
Identities = 74/365 (20%), Positives = 139/365 (38%), Gaps = 18/365 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K + LL + LVF+I L E +G+ +Y + +P
Sbjct: 7 NILERYIGKTIITMIFAVLLMSSGLVFIIKLAEEFKDVGK-GSYDALTATYYSLLMLPSD 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I++ IP + L+ ++ NL SELV+ ++ G S +++ + +I L +FT+LV
Sbjct: 66 IKEFIPVVALIGGLLGLGNLASRSELVVMQSSGFSRFRIGLAVMKTAIPLIVFTMLVSEW 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
E+ ++ + + W + N FI + I E + +
Sbjct: 126 GIPQTEQYARNMRSIAQSGSSMLSTKGGFWAKDGND----FIYIRHIENE-RKLNNLSIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID------KNSTTLNIPIKMDG 236
+ + A AI L+ V I K+ T P K+
Sbjct: 181 HF-EDKSLKSVTQAQNAIFNGKNWTLQNVQTSSIADNSIQQAKEVNKDWQTTITPSKLGI 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E + + + + + + ++ R + F+ + P+ + M L+A S
Sbjct: 240 VSLKPESLSISGLSDYVGFLKETGQ----NSKRFQIAFWRKVYQPISMAVMMLLAISFVF 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF-GKSGILLPVAAALIPVILTISLSILIL 355
RS+ + GI +GF+ Y + + + ALIP ++ +S+ +L
Sbjct: 296 GPLRSSAMGTKLFIGIIAGFVFYVSNIVFGNMTLVFSWIPVAIGALIPSLICLSIVWWLL 355
Query: 356 LQKED 360
+K D
Sbjct: 356 TKKRD 360
>gi|332530549|ref|ZP_08406487.1| permease YjgP/YjgQ [Hylemonella gracilis ATCC 19624]
gi|332039995|gb|EGI76383.1| permease YjgP/YjgQ [Hylemonella gracilis ATCC 19624]
Length = 372
Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats.
Identities = 62/365 (16%), Positives = 133/365 (36%), Gaps = 20/365 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMG--ELPNYSISRGAVLAATRVP 60
L R F+ L T + L + L D + + +G + P + + + + P
Sbjct: 5 PTLRRLLFREILFTASFVTLAFLALFVFFDFIDQLSAVGRPDRPGFELPQALIYVVLLAP 64
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ I V L ++SE I R G+ W+ L + + T ++
Sbjct: 65 GHLYELLPITVLIGTIYVMTRLAQSSEFTILRTSGLGPWRALAMLLTAGGVFASATFVIG 124
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ ++ Q++ G W++ P I +LP+ +
Sbjct: 125 DYLSPWSNQVAQAYRAQFRKEGASTIKG-GAWLREREPYAKYGINIGALLPDGT-LQRVR 182
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRI-PIDKNSTTLNIPI------ 232
ID ++ A A I ND+ L V ++ P + T +P
Sbjct: 183 IYEIDNAGNLVSTLQASTARINNDQSWTLMGVERTEFNAAGPDVRRIETTQLPSYRWPTG 242
Query: 233 ----KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ ++ + + I + + + + R E QF+ + PL + M
Sbjct: 243 ISAEMISAAVLDPDRMNTVDLFLYIGHLEDNAQ----NAERYEIQFWKKVFYPLSCLVMV 298
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
++A + R+ + V G+ +G + + ++ G+ P AA P ++ +
Sbjct: 299 MMALPFAYLHFRNQGISLYVFGGVMAGVTFFFLNSMFGYIGELRHWTPWIAAATPGLIFM 358
Query: 349 SLSIL 353
S+
Sbjct: 359 LFSLA 363
>gi|121997476|ref|YP_001002263.1| permease [Halorhodospira halophila SL1]
gi|121588881|gb|ABM61461.1| permease YjgP/YjgQ family protein [Halorhodospira halophila SL1]
Length = 350
Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats.
Identities = 63/357 (17%), Positives = 133/357 (37%), Gaps = 14/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y + + +L L + L FV + + + + A P +
Sbjct: 3 ILTGYLARTVIAASLVALAAILALDFVFSMVDGV----ADDGLDTTTMLLKALLGAPALA 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ PF TL+ ++ L EL RA G+S+ Q+ +VG ++L + V +
Sbjct: 59 YEAFPFATLIGALMGLGGLAARQELTAMRAAGVSVVQIAGAVLVGGVILALLATAVGELV 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E+ + + + + D W + F+ A++ +H E T
Sbjct: 119 VPPAERQAAAVRGLSEADELRTGPDGALWAR----DGRDFLRAERPRSASH-LESVTLYR 173
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQKF 240
+ ++ R DAD A + + +L+ VV+ Y +++ + + D
Sbjct: 174 FVE-GQLTERIDADGAHYEDGQWRLEGVVKTVYADHRLERRELEAWAWQGALSPDVLAVV 232
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ E+ + + + +N + + + PL +AM L+ + R
Sbjct: 233 VADPSTLPVPELWTYIQYLD-ANELDSGPYRLALWEKVATPLATLAMLLVTIPLVFTAVR 291
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
S+ + G+ G + + + G + P +AL+PV+ +L + L+
Sbjct: 292 SSGAGQRIVIGVLVGVAFFLLNRALGQAGVVYGVPPSLSALLPVVAFAALGLWGTLR 348
>gi|22297556|ref|NP_680803.1| hypothetical protein tlr0012 [Thermosynechococcus elongatus BP-1]
gi|22293733|dbj|BAC07565.1| tlr0012 [Thermosynechococcus elongatus BP-1]
Length = 379
Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats.
Identities = 54/363 (14%), Positives = 128/363 (35%), Gaps = 15/363 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + ++ ++ + VI + + + + R+P
Sbjct: 17 FSLLDRYILREMIRPFVFGFGIFTAIAAVIGTVFYLIRNMVEHHLGLLSAIQVFFLRLPT 76
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IP L ++ + L+R SEL+ ++ G+S +L+ P ++ + T +
Sbjct: 77 FAVLGIPMAMLFGALLSYSQLSRRSELIACKSCGVSPVRLVRPALLAGFCALLCTFALNE 136
Query: 122 PIATSGEKIGID-LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A I L ++ I + + + A + + + T
Sbjct: 137 LVAPPLAYRAIKTLEVAIHRPQPTFQTRNIFYRRFGDGHLRQLFFAHRF--DGKVMGQVT 194
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKV--------KLKKVVEYQYGRIPIDKNSTTLNIPI 232
+ ++ ++ A A L+ +Y I ++ P+
Sbjct: 195 VLNF-EQGELREIITAQEAQWQGSAWLFRQGTYHHLRGDRDYDVAEIFSERRFAYPRTPL 253
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + E SR Y ++ ++ S + +R Q + +P + ++ +I A
Sbjct: 254 DLAMETRVPEFMTSREIYRYLQILAESGDAKRLRQWR--VQLQEKLSLPFLCLSFAVIGA 311
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + R Q + F Y I +FG+ G + P+ A+ +P + ++++
Sbjct: 312 VLGISSPRQGQ-GRAFGLSVAIIFGYYVAAFIFTAFGEGGAVHPIVASWLPKGIVSAIAL 370
Query: 353 LIL 355
+L
Sbjct: 371 GML 373
>gi|134095576|ref|YP_001100651.1| hypothetical protein HEAR2399 [Herminiimonas arsenicoxydans]
gi|133739479|emb|CAL62530.1| putative permease [Herminiimonas arsenicoxydans]
Length = 382
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 60/382 (15%), Positives = 126/382 (32%), Gaps = 28/382 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL +YF ++ ++ L+ + L DL +G Y I + +P
Sbjct: 2 KILQKYFAAEIGRSVIFVLIAFLALFGFFDLIAELKAVGH-GGYKIQHALLFVLLSMPGY 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +++P L+ I SE I RA +S + ++ I T +V
Sbjct: 61 LYELMPIAALIGTIWTLSQFAARSEFTIMRASSMSTGMAGLMLIKIGLVFAIVTFVVGEF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPW----MQISNPQQDIF----IGAKKILPENH 174
+ + + + + Q+ W ++ + + + + + P+
Sbjct: 121 VVPASSNMAEKIRTLNQGGSLSQEFRSGLWTKDMIRSNGKDGEAIGSRFLNVRTVQPDGQ 180
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPI------------ 221
D ++ + A A ++ L + ++G +
Sbjct: 181 -LTDLKIYEFNRNFHLTALITAARADYQGDNVWLLSNGSQAEFGETELMGAAVATDITTA 239
Query: 222 ----DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ S L + + A S Y+++ + ++N R E +
Sbjct: 240 ISTRNFASKPLISEVTPEILSVGFSDPAKMSAYDLVNYTQYLAENN-RETARYEIALWKK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
+V P + M +A + RS + + GI G I ++ G P
Sbjct: 299 VVYPFAVFVMMALALPFAYLHFRSGGVSLKIFTGIMIGVSFQLINSLFSHLGLLNTWPPF 358
Query: 338 AAALIPVILTISLSILILLQKE 359
A A++P +L + +I LL E
Sbjct: 359 ATAILPSLLFLLAAIGALLWVE 380
>gi|261492351|ref|ZP_05988913.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496137|ref|ZP_05992545.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261308239|gb|EEY09534.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261312034|gb|EEY13175.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 365
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 74/369 (20%), Positives = 136/369 (36%), Gaps = 21/369 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K L L + L +I E +G +Y + A +P
Sbjct: 7 NILERYIGKTILSAIFLTLFMLIGLGAIIKFVEEFRDVGR-GSYDGLKAAYYTFLTIPRD 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I+ P L+ +++ NL SELV+ +A G S +++ + ++ L +FT+++
Sbjct: 66 IETFFPIAALLGSLLGLGNLASRSELVVMQASGFSRFRIGLAVMKTALPLVLFTMIIGEW 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
E+ ++ + G + W + + FI I E ++
Sbjct: 126 GVPQTEQFARNMRSIAQSGGSMLATKDGFWAK----DGNSFIYINHIKNEKS-LDNVLIY 180
Query: 183 TIDK---KNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKN------STTLNIPI 232
+ K ++ A A ++K L KV + G I + T P
Sbjct: 181 QFGEGQNKRELQSVLKAGTANYSDEKGWVLSKVEKSTVGENQIQQAKQPDQVWQTSLTPS 240
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ E + + + + + + R E F+ + P+ + M L+A
Sbjct: 241 KLGIVSLKPESLSISGLADYVGFLKDTGQ----DPKRFEITFWRKVFQPISMAVMMLLAI 296
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK-SGILLPVAAALIPVILTISLS 351
S RS+ + GI +GFM Y + + + L ALIP +L + +
Sbjct: 297 SFIFGPLRSSTMGAKIVIGIVAGFMFYVANIVFGNLSLIATWLPVPVGALIPSLLCLIIV 356
Query: 352 ILILLQKED 360
+L +K D
Sbjct: 357 WWLLSKKRD 365
>gi|94968543|ref|YP_590591.1| YjgP/YjgQ family protein [Candidatus Koribacter versatilis
Ellin345]
gi|94550593|gb|ABF40517.1| transporter, YjgP/YjgQ family [Candidatus Koribacter versatilis
Ellin345]
Length = 792
Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 60/365 (16%), Positives = 133/365 (36%), Gaps = 14/365 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P +L + +L + L ++L V E+ + + S+ P
Sbjct: 430 PLLLDDMILRDFLLYFVMVLTTFVMLALVFTFFELLGDIVKN-RVSVVMLGDYLLNLSPS 488
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I + P L+ +V F + R++E+ +A GISI+++ P + + ++ +
Sbjct: 489 LIYLMTPLSVLLAVLVTFGLMQRSNEITAMKATGISIYRVAFPVIAIAGVVAASLFVFDQ 548
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQ-KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
K L + K + W+ SN + + + + + +
Sbjct: 549 LYIPKANKRQETLRNEIKGKPPQTYLRPDRKWIFGSN---NTIYYYEVYDADQNRFGGIS 605
Query: 181 SITIDKK-NKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDK----NSTTLNIPIK 233
D K + R A A + K ++ + I++ T+ + +
Sbjct: 606 IFQFDPKTFALQSRIYAQHAHWEDGLQKWVFEQGWMRKLNGSAIEEFKPFEVETIALAAE 665
Query: 234 MDG-FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
F+K Q + E+++ + +S F R Q Y + P++ + M ++A
Sbjct: 666 PPAYFKKEVRQSQEMDYQELLRYIHDLQQSG-FDVVRFRVQLYKKLAYPIITLVMAILAI 724
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S+ R P VA I + + + ++ G + L + AA P ++ +
Sbjct: 725 PFSVYRQRRGGPLAGVATAIGIAILYWVSAGLFEAMGNANQLPALLAAWAPNLIFGFAAG 784
Query: 353 LILLQ 357
++L+
Sbjct: 785 YMVLR 789
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 59/379 (15%), Positives = 120/379 (31%), Gaps = 27/379 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY L L ++F+ DL + + + A + +P +
Sbjct: 5 ILTRYILGEVLSHGAIGLALFTFVIFMRDLGRLLELIVRNS-APLPSVAEIFFLTLPTAL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P LV ++ L+ SE+ R+ G+ + + S+ L I ++ +
Sbjct: 64 TVTLPMAVLVGILIGLSRLSADSEVTAMRSSGLGSLFFVRIVSIFSVALWILALVNNLYV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A L + K + + + + +++ K + +W
Sbjct: 124 APRSAAALAHLQDKLKSSQASFEVQPRVFYEDF-KNYVLYVEDSKSGSGSALWRGVFLAD 182
Query: 184 IDKKNKIIHRKDADLAI------------IYNDKVKLKKVVE-YQYGRIPIDKNSTTLNI 230
+ ++ A+ + + N + + QY D+ + +
Sbjct: 183 VSTPSQP-KITMAERGVVVAEGPNSLHLHLENGTQQETNPKDPTQYQVSTFDQTDIPIQL 241
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH---------NYRAETQFYFLIVIP 281
P D A S E+ + S + +F I +P
Sbjct: 242 PETNDKPAPELVPVAELSTQELWRLAHSGGVSAGHYLGNSIAQVKARWYAVEFQRRIALP 301
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ +TL+ + L SR + I F Y + I S G+ G L P
Sbjct: 302 TACLVLTLVGIPLGL-SSRRGGKSMGFVLTIILVFAYYVVSLIGVSLGRQGKLPPAVGVW 360
Query: 342 IPVILTISLSILILLQKED 360
+ ++ + I +LL + D
Sbjct: 361 MANVVFLVAGI-MLLHRVD 378
>gi|193212079|ref|YP_001998032.1| permease YjgP/YjgQ family protein [Chlorobaculum parvum NCIB 8327]
gi|193085556|gb|ACF10832.1| permease YjgP/YjgQ family protein [Chlorobaculum parvum NCIB 8327]
Length = 383
Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 60/347 (17%), Positives = 136/347 (39%), Gaps = 13/347 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +L + L L +I+L E ++ + + + + +P
Sbjct: 28 IIDRYIIRQFLTIFFFSLASFAALFIIINLIENLDRFMSR-QIPVGQIIIYYLSGLPDTF 86
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ ++ V L+ SEL +A G+S+ +L+ PF++ + + F ++ I
Sbjct: 87 LLTSPLSVLLASLFVTGKLSMQSELPALKAAGMSLSRLMKPFLLATFFITAFNLVNSCFI 146
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + +Q+ + + + N + +I + + T
Sbjct: 147 TPAMYDLSKGYEKRYLKSQKEQQEEAVHIRESKNR----ILTVGQINRDRQSAVSVSLET 202
Query: 184 IDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQY----GRIPIDKNSTTLNIPIKMDGF 237
D +++ R DAD I ++ + + + + + TL + + + F
Sbjct: 203 FD-GSRLASRLDADSLRISSNGRHWVFYNTKQRTFVNGRETLVANPGADTLKLALAKNTF 261
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + ++ +S + RAE + I +PL + + LI +S
Sbjct: 262 TMIDADPDEMNLVQHLAFIAQKKRSGLPGLERAEVELQTKIALPLASMLIVLIGVPLSTR 321
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
RS + A + G ++ + S G G++ PV AA +P
Sbjct: 322 KKRSG-LALEAATSLLIGLFYLGMLKTIGSLGYDGLINPVLAAWLPN 367
>gi|124267133|ref|YP_001021137.1| hypothetical protein Mpe_A1944 [Methylibium petroleiphilum PM1]
gi|124259908|gb|ABM94902.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 373
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 62/366 (16%), Positives = 134/366 (36%), Gaps = 26/366 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R + L + + + L F ID E + +G Y + A+ +P + ++
Sbjct: 6 RLLYADVLGAVTFVAVSFLSLFFFIDFVEELDDIGR-GAYRVHHAALYCLLELPGRLYEL 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I L ++SE I R G+ + L+ + + T +V + +
Sbjct: 65 LPIAVLIGTIYAMARLAQSSEFTILRTGGLGPGRALSLLAKIGLAFAVLTFVVGDYVGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISN-------PQQDIF--IGAKKILPENHIWE 177
+ L + + ++ W++ P + I + P+ + +
Sbjct: 125 FDAKAQTLRSTLRGSASGGGNNSA-WLKDRRAAAPGELPAGERIDSINIGNVGPDG-LLD 182
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ-----YGRIPIDKNSTTLNIPI 232
D ++ +++ R A+ A++ + +LKKV + +P+D+ L P
Sbjct: 183 DVRIYEFSEEGQLLARVAAEHAVVEDGAWRLKKVRLTRWHAASGDGLPVDERRDELRWPT 242
Query: 233 KMDG-----FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
++ + ++ Y + +S + ++ R E QF+ + PL + M
Sbjct: 243 RLTPSVVGAAVSPLKSMSTVDLYRYMSHLSQNEQA----AQRQEIQFWKKALYPLACLVM 298
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
+A + +R+ + V GI G + + G P AA P
Sbjct: 299 VGLALPFAYLHARAGGVSVKVFGGILLGISFVLLNNVSTHLGLLRDWTPWIAAAAPGAFY 358
Query: 348 ISLSIL 353
+ LS+
Sbjct: 359 LLLSMA 364
>gi|42524172|ref|NP_969552.1| hypothetical protein Bd2760 [Bdellovibrio bacteriovorus HD100]
gi|39576380|emb|CAE80545.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
Length = 359
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 58/356 (16%), Positives = 131/356 (36%), Gaps = 10/356 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY ++ YF+ G ++ + + + + M + + S P II
Sbjct: 4 IDRYTAWLFVG---YFVGGLLVFLTLFTAVDAMSTMVNYKDVAPSALVNYYLYSFPGIIS 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q++P L+ I+ +LN+ +ELV A G+S+ ++ P ++ ++ + + +
Sbjct: 61 QLLPVACLLGVILTLTSLNKANELVALFASGMSLIRIAVPMLLLVAVISALGYMAADRVL 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
K + I + + + I +I ++ K + + + T
Sbjct: 121 PRATKQ-KNYILYYDLKKEPHRFSTIRTDRIWYRSKNSIFNIKTLNAKGDGAQGLTMYFF 179
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-----DKNSTTLNIPIKMDGFQK 239
+ ++ A I + L++ + + + ++ + Q
Sbjct: 180 SDEWDLVQMITAAQVKIQGAQWLLEQGTVTIFNKDSSFPLTSPFKTKSIVMAEDSKDLQS 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S E+ + NK+ E ++ I + M L+ S+ +
Sbjct: 240 AGQTADMMSQKELEHFI-DKNKAAGLDTVAYEVDYHSKISFAFAGLVMCLLGIPFSVGRA 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS + V + F Y + + G+ G L PVAAA P I+ + ++ ++L
Sbjct: 299 RSGGTMLNVGICLALVFAYYVFYSSGITLGQHGTLPPVAAAWAPNIVMLGVAFVLL 354
>gi|254360523|ref|ZP_04976672.1| possible inner membrane protein [Mannheimia haemolytica PHL213]
gi|153091063|gb|EDN73068.1| possible inner membrane protein [Mannheimia haemolytica PHL213]
Length = 365
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 75/369 (20%), Positives = 136/369 (36%), Gaps = 21/369 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K L L + L +I E +G +Y + A +P
Sbjct: 7 NILERYIGKTILSAIFLTLFMLIGLGAIIKFVEEFRDVGR-GSYDGLKAAYYTFLTIPRD 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I+ P L+ +++ NL SELV+ +A G S +++ + ++ L IFT+++
Sbjct: 66 IETFFPIAALLGSLLGLGNLASLSELVVMQASGFSRFRIGLAVMKTALPLVIFTMIIGEW 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
E+ ++ + G + W + + FI I E ++
Sbjct: 126 GVPQTEQFARNMRSIAQSGGSMLATKDGFWAK----DGNSFIYINHIKNEKS-LDNVLIY 180
Query: 183 TIDK---KNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKN------STTLNIPI 232
+ K ++ A A ++K L KV + G I + T P
Sbjct: 181 QFGEGQNKRELQSVLKARTANYSDEKGWVLSKVEKSTVGENQIQQAKQPDQVWQTSLTPS 240
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+ E + + + + + + R E F+ + P+ + M L+A
Sbjct: 241 KLGIVSLKPESLSISGLADYVGFLKDTGQ----DPKRFEITFWRKVFQPISMAVMMLLAI 296
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK-SGILLPVAAALIPVILTISLS 351
S RS+ + GI +GFM Y + + + L ALIP +L + +
Sbjct: 297 SFIFGPLRSSTMGAKIVIGIVAGFMFYVANIVFGNLSLIATWLPIPVGALIPSLLCLIIV 356
Query: 352 ILILLQKED 360
+L +K D
Sbjct: 357 WWLLSKKRD 365
>gi|120553895|ref|YP_958246.1| permease YjgP/YjgQ family protein [Marinobacter aquaeolei VT8]
gi|120323744|gb|ABM18059.1| permease YjgP/YjgQ family protein [Marinobacter aquaeolei VT8]
Length = 353
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 53/356 (14%), Positives = 116/356 (32%), Gaps = 17/356 (4%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + ++ + L + Y + A +P I +
Sbjct: 7 YVMRTVGGAMFLVMVVVLSLDVIFAFIAELEDTRN--EYQTLQALWYVALTLPRRIYDYL 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + +V ++ +SEL + RA G+S+ +++ + ++++ + V + +A +
Sbjct: 65 PLGAFMGCLVGLGSMASSSELTVIRAAGVSLKRIVWSAMKPALIVVLLGVAIGEYVAPTT 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
E+I G S W + + + F+ + P + + D
Sbjct: 125 ERIAQSDKAVALGAGSSVASAEGVWHR----EGNTFMHLNAVQPNG-VLHGVSLFRFDDA 179
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVV------EYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ A+ AI D L+ V E + T P +
Sbjct: 180 RQLQVASFAERAIYQGDYWLLENVTSTRIEPERTVRDVSASLRWETGLSPSVLSVLIVKP 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
E + Y + S + F+ ++PL M L+A S RS
Sbjct: 240 ENLSMTGLYTYAAYLGEQGLS----AAQYWLAFWKKALMPLGTAVMVLVAISFVFGPLRS 295
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
V G+ G + + ++ P+ A L P+++ + +++ +
Sbjct: 296 VTMGFRVFTGLLVGLLFKYMQDLLGPMSMVYGFNPLIAVLAPIVVNGIVGAVLMRR 351
>gi|260655096|ref|ZP_05860584.1| putative membrane protein [Jonquetella anthropi E3_33 E1]
gi|260630207|gb|EEX48401.1| putative membrane protein [Jonquetella anthropi E3_33 E1]
Length = 339
Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 53/345 (15%), Positives = 132/345 (38%), Gaps = 14/345 (4%)
Query: 18 LYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIV 77
+ F L + + L ++ + G S++ L +P ++ +P L+ ++
Sbjct: 1 MAFSLIMVAGGLLFKLADLIIERG----VSLAVAGRLFVYELPGVVVLTLPMSCLLGALL 56
Query: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ 137
F ++ SE+V +A GIS W++ P + ++++ I ++++ + G++ +++
Sbjct: 57 GFGAMSTNSEVVALKASGISFWRMNWPVIFWAVIISILSLILNETLVPLGQRAAENVMTF 116
Query: 138 WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDAD 197
++Q + + K+ P + + + K+ A
Sbjct: 117 EVAKQKPVLIKQEVFLQAPGGR---VVYVGKLDPSSGSMSNV-IVQELASGKLTRITVAP 172
Query: 198 LAIIYNDKVKLKKVVEYQYGRIP-----IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEI 252
+ L Y+ L I + S + S ++
Sbjct: 173 NGQWVSGIWYLTDGDVYEMKEPDGVAHLFHFAKQELPISLTPRQIANTSVKPDDLSASDL 232
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
+ ++ + K +F+F + +P V ++LI S+ + R + I
Sbjct: 233 YRYIA-AMKMQGKDISALWVKFHFKLAVPWACVILSLIGTSLGVSHQRHGNRSVGFGQSI 291
Query: 313 FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F+ Y ++++ KS G++ L PV A +P I+ + ++ ++ +
Sbjct: 292 LIVFLYYVLMSVGKSLGQTNALPPVVAGWLPNIIFLVAAVFLIRR 336
>gi|16125407|ref|NP_419971.1| hypothetical protein CC_1155 [Caulobacter crescentus CB15]
gi|221234150|ref|YP_002516586.1| hypothetical protein CCNA_01213 [Caulobacter crescentus NA1000]
gi|13422473|gb|AAK23139.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220963322|gb|ACL94678.1| hypothetical membrane spanning protein [Caulobacter crescentus
NA1000]
Length = 353
Score = 183 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 68/361 (18%), Positives = 130/361 (36%), Gaps = 17/361 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y + L L M ++ ++DL ++ + + + ++ AA R+P + +
Sbjct: 3 LQLYVLRTVATRILGAALILMSVLQILDLLDVTSDILDR-GLGMAGVGYYAALRLPRLFE 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL---LNPFVVGSILLGIFTVLVIN 121
Q+ P L + F L R S +V RA GIS +++ P V +LL V+
Sbjct: 62 QVAPIAVLAGGLFAFSQLARESAIVAMRASGISGYRIVGMAVPAAVAVMLLDALCGQVLA 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
P A + W N P + D+ IGA + T
Sbjct: 122 PRADPT-------LADWWRNTTPVAERKEPVPRTFRAGADLVIGA-NASADGRTITGVTI 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI---PIDKNSTTLNIPIKMDGFQ 238
D K ++ + +A A L++ ++ +T+ ++ Q
Sbjct: 174 FRRDSKGILVEKVEAPAARYDGKAWTLEQPKTTRFAGDLSQASTAAATSWPTALRPQDVQ 233
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + + + T P + + M L++A V+L
Sbjct: 234 GLFGDDSMPTAASARRALENGG--SDRPESFYATHLQAAFASPFVSLVMLLLSAPVALAN 291
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS Q +++ G+ +G M ++ + G+SG L P A + +L++ L
Sbjct: 292 FRSGQGAVLLTGGLAAGLMFLVANGMLTALGESGALTPFLAVWAAPAIFGALAVRTFLAL 351
Query: 359 E 359
E
Sbjct: 352 E 352
>gi|260221416|emb|CBA29957.1| hypothetical protein Csp_A14750 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 384
Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats.
Identities = 59/367 (16%), Positives = 130/367 (35%), Gaps = 21/367 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP--NYSISRGAVLAATR 58
+ L + + + LG M L F D+ E + + Y + + + A
Sbjct: 16 LMKTLRKLLYGEVITAVTLVTLGFMALFFFFDVVEELQSVSRIASSGYQVPQALIYVALM 75
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P + ++ P L+ I V L R+SE I R G+ W+ L + + +FT
Sbjct: 76 IPAHVYELFPITVLIGTIFVMARLARSSEFTILRTSGLGPWRALRTLLALGLGFVLFTFA 135
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
V + +A +K L + + G W++ + + + +D
Sbjct: 136 VGDYVAPLADKTAQLL--KSRFQGKISVGKTGAWLKERQAYGSYSVNVGALSSDAT-LKD 192
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNS------TTLNIP 231
D + K++ +A +D+ L + V ++ P + + P
Sbjct: 193 VRVYEFDNQGKVVSLTEAKAGTFGDDESWMLTQGVRTEFTSGPDQVSKVDRVAFESFRWP 252
Query: 232 IKMDGFQK-----FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
++ E+ + ++ I+ ++ + +S + E QF+ + PL +
Sbjct: 253 TQISAEMVAAAVLRPERMGTIDLFQYIRHLNANGQS----AQKYEIQFWKKVFYPLSCLV 308
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
M +++ + RS G+ +G + ++ G P A +P ++
Sbjct: 309 MVVLSLPFAYLHFRSGSIAGYTFGGVMAGISFVLLNNVLNDLGNLQGWQPWITAALPGLI 368
Query: 347 TISLSIL 353
S+
Sbjct: 369 YSFFSLA 375
>gi|33151746|ref|NP_873099.1| hypothetical protein HD0552 [Haemophilus ducreyi 35000HP]
gi|33147967|gb|AAP95488.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 360
Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats.
Identities = 75/362 (20%), Positives = 141/362 (38%), Gaps = 12/362 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K + LL + LVF+I L E +GE NY A +P
Sbjct: 7 NILERYIGKTIIMMMFAVLLMSSGLVFIIKLVEEFKNVGE-GNYDALTATYYALLMLPSD 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I++ +P + L+ ++ NL SELV+ ++ G S +++ + +I + I T+
Sbjct: 66 IKEFVPVVLLIGGLLGLSNLASHSELVVMQSTGFSRFRIGLAVMKTAIPIIILTMSASEW 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I E+ ++ + G ++ W + + F+ + I E H + +
Sbjct: 126 IIPKVEQFARNMRSVAQSGGSMLSTNGGFWAK----DGNNFLYIRHIENE-HQLNNISIY 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKK---VVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ K + AD A+ L+ +G + + I
Sbjct: 181 HFENKV-LTSVSQADSALFNGKDWTLQNLQTATITDHGIQTTHQANQNWQTTITPSKLGI 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + S S + +SF ++ + R + F+ + P+ + M L+A S
Sbjct: 240 VSLKPESLSIAGLADYVSFLTETGQ-DSKRFQIAFWRKVYQPISMAVMMLLAISFIFGPL 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSF-GKSGILLPVAAALIPVILTISLSILILLQK 358
RS+ + GI +GF+ Y + + L ALIP ++ +++ +L +K
Sbjct: 299 RSSAMGTKLFIGIIAGFIFYVSNIVFGNMTLVFSWLPIAIGALIPSLICLAIVWWLLTKK 358
Query: 359 ED 360
D
Sbjct: 359 RD 360
>gi|194334630|ref|YP_002016490.1| permease YjgP/YjgQ family protein [Prosthecochloris aestuarii DSM
271]
gi|194312448|gb|ACF46843.1| permease YjgP/YjgQ family protein [Prosthecochloris aestuarii DSM
271]
Length = 387
Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats.
Identities = 62/361 (17%), Positives = 140/361 (38%), Gaps = 13/361 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ + Y + + T ++ L + L V+DL E ++ + I ++ + +P
Sbjct: 27 LLKRIDTYIARQFGLTCIFASLSFLALFVVLDLIENIDRFIDNS-VDIQHISLYYLSFLP 85
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P L+ ++ V L+ +SEL + G+S+ +++ PF S+++ +F ++
Sbjct: 86 EVFLATTPIAVLLSSLYVTGRLSSSSELSAIFSAGLSLRRIMLPFAFVSLVITVFNIVNA 145
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS-NPQQDIFIGAKKILPENHIWEDF 179
I ++++ K + P +I +D + K+ P E
Sbjct: 146 GWILPETTAYKNTFMREFLG---KNSEHLFPESRIHILESRDRILSIGKLEPNTGQAEKI 202
Query: 180 TSITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPI----DKNSTTLNIPIK 233
T T D + I R DA+ D+ + + D + TL + +
Sbjct: 203 TLETFD-GSTITQRIDAEKMNYNADLDRWIMTGTRNRTFLPDTTLYRYDPGNDTLKLSLT 261
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
++ + + + + + + + A + + I +P+ + + LI
Sbjct: 262 ASSLKELHLRPEEMNIVQHYRYIEEKKDAGFSNLQTAIIELHSRIALPITSLIIILIGVP 321
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S RS I I GF+ ++ + + G G+ PV A +P I+ + + I+
Sbjct: 322 LSTRKKRSG-LAIEAGISILIGFLYISLEKTIHAIGNGGMADPVLTAWLPNIIFLGVGIV 380
Query: 354 I 354
+
Sbjct: 381 L 381
>gi|304311790|ref|YP_003811388.1| Predicted permease YjgP/YjgQ [gamma proteobacterium HdN1]
gi|301797523|emb|CBL45743.1| Predicted permease YjgP/YjgQ [gamma proteobacterium HdN1]
Length = 352
Score = 182 bits (463), Expect = 6e-44, Method: Composition-based stats.
Identities = 61/357 (17%), Positives = 127/357 (35%), Gaps = 11/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY L + LL + L V + Y + + +P +
Sbjct: 3 LLDRYIGVSVLTSVAGMLLLIVGLDVVFSFIGELEDLKN--QYQMPQALQYILLTIPRRV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P TL+ ++ L TSEL + RA G+S+ +++ V +L+ + +++ +
Sbjct: 61 YDYVPVATLIGCLIGLGMLANTSELTVIRAAGVSVMRIVWSAVKPVLLVVVGALVLGQYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E+ L W D D S W + + D F I + +
Sbjct: 121 VPKTEQYAQGLRTLWIDGSDTISSRNGFWYR----EGDEFFHVNAIQTDG-VVYGLARYV 175
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQKF 240
D +++ + A+ + D +L+ V ++ + S+T I
Sbjct: 176 FDGDQRLLEAEYAERGVFEGDHWRLENVRRTRFDQDHTQYATMESSTWRSQITPQLMSLV 235
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S ++ + ++ +I F+ + P + M IA S R
Sbjct: 236 VLKPTALSLTDLYTFARYRDQQSISSGQFYYA-FWKKTLQPATTIVMVFIAISFIFGPLR 294
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
S + GI G + ++ + P+ AA +P+ + + + I +L +
Sbjct: 295 SVTMGQRLITGIIVGLVFTYAQDMLGHISVVYNVPPLIAAGLPIAIFLGVGIKLLRR 351
>gi|257095655|ref|YP_003169296.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257048179|gb|ACV37367.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 357
Score = 182 bits (462), Expect = 8e-44, Method: Composition-based stats.
Identities = 63/353 (17%), Positives = 122/353 (34%), Gaps = 11/353 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + + L LLG + L D+ +G+ Y + R+P + ++
Sbjct: 6 RYVGREVMGAVLLVLLGFLALFAFFDMLGEIRNVGQ-GGYQLHHAFAFVLLRIPGRVYEL 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ + L R SE+ + R G+S LL + +L + T L+ +A
Sbjct: 65 MPIAVLIGTLYALSTLARHSEITVLRVSGLSSGGLLTVLFQVAGVLAVLTFLIGEYVAPP 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E+ L + + Q W++ + FI + +LP+ D+
Sbjct: 125 SERAAFQLRSKERTGMVGQDLRSGLWVK----DERSFINVRIVLPD-TRLRGIRIFEFDE 179
Query: 187 KNKIIHRKDADLAII-YNDKVKLKKVV--EYQYGRIPIDK-NSTTLNIPIKMDGFQKFSE 242
K+ +A D +L VV + GR + + D
Sbjct: 180 DAKLRSMTEAAEGEYVVPDSWRLTNVVQTVLEGGRAEVRSVPDMQWRSALNPDILAVLLV 239
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S + N R + F+ ++ PL + M +A SR
Sbjct: 240 SPDRMSLRHLSAYTKHLAD-NHQTTNRYDIAFWKKVIYPLAGLVMVALALPFGGAHSRVE 298
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + G+ G + + + + + G P+ +A P IL + + ++
Sbjct: 299 GVGLKIFVGVMIGTLFHMLNGLFSNLGAINHWSPLLSAATPSILFLLAATAMI 351
>gi|189500954|ref|YP_001960424.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
gi|189496395|gb|ACE04943.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
Length = 360
Score = 181 bits (461), Expect = 9e-44, Method: Composition-based stats.
Identities = 64/360 (17%), Positives = 142/360 (39%), Gaps = 15/360 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L +Y + Y T ++ + + L V+ L E + + + + +P
Sbjct: 2 KLLDKYIARQYFTTYVFAGISFVSLFIVVSLIENLGSFIDK-GIEAEQIILYYWSLIPET 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I P +L+ ++ + L+ +SEL + G + QLL PF+ ++L+ F +L
Sbjct: 61 ILLTSPISSLLASLYITGRLSGSSELTAMKTAGAGMHQLLKPFLAVALLVSFFNILNAGW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDK--QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + Q+ D + S+ + + ++ + + +N+ + +
Sbjct: 121 LYPKAAALKNRFETQYFDKTFENISSSNNLHIL----ESRNRILSIGSLDQQNNTGLNIS 176
Query: 181 SITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRI----PIDKNSTTLNIPIKM 234
T + +I R DA D+ L + + + ++ + TL + +
Sbjct: 177 LETFEGP-EIASRIDAKKISYDETLDRWILHETRTRVFSQNGMSYTLNPGNDTLTLSLSA 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ S Q + + + ++ + R +F+ + +PL V + L +
Sbjct: 236 TSLRDLSIQPDEMDIMQHYRYIDEKREAGFSNLDRVIVKFHNKLALPLASVIVILTGVPL 295
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S RS I +F+GF+ + + + G G+L PV AA +P +L +++ I I
Sbjct: 296 SARKKRSG-LAIEFGISLFTGFIYLGLQRTLSTAGYRGLLDPVLAAWLPDLLFLAVGIAI 354
>gi|322435367|ref|YP_004217579.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX9]
gi|321163094|gb|ADW68799.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX9]
Length = 813
Score = 181 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 63/393 (16%), Positives = 128/393 (32%), Gaps = 39/393 (9%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P IL Y + + T L ++ + E+ + + +P
Sbjct: 422 PLILDDYIMREFGATFALVLAAFSMVFLIFTFFELIGDIIRN-RIAFVTVGDYLLNLIPY 480
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ + P LV +V F +L +TSE +A G+S+++++ P +V + ++
Sbjct: 481 ILYNVTPLCVLVAVLVTFGSLAKTSEFTAMKASGVSLYRVVTPVLVLTAVIACSLFAFDE 540
Query: 122 PIATSGEKIGIDLI---------------QQWKDNGDKQKSDIIPWMQISNPQQDIFIGA 166
+ L +QW + + P +
Sbjct: 541 FYLPQANRRQEALRSVIKGKPAQTFLRPDRQWISGQTVLDPISLAQSRSWAPIAPAVVHI 600
Query: 167 -------------KKILPENHIWEDFTSITIDKK-NKIIHRKDADLAIIYND--KVKLKK 210
+ P++ + + T D + R A+ A ++ + +
Sbjct: 601 GDTAKQPARIFYYQFFDPDHDAFANLTVFEFDPATFTLTRRIFAESAKWDSNVNQWIFEN 660
Query: 211 VVEYQY-GRIPIDKNSTTL----NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF 265
+ G + TL I + F+K Q SF E+ +S +S F
Sbjct: 661 GWSRTFSGEVADTYKPFTLANFPEIHEQPQYFKKEDRQSQQMSFGELSSYISDLRQSG-F 719
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM 325
+ R Q + P + + M ++A +L + A I + + ++
Sbjct: 720 NTMRLSVQLNRKLAYPAITLVMAILAIPFALSSGKRGGV-TGFAIAILLAVVYLGVSSLF 778
Query: 326 KSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++ G L P+ AA P +L LL+
Sbjct: 779 EAMGNVNTLPPMLAAWTPDLLFTFAGAYFLLRT 811
Score = 132 bits (333), Expect = 8e-29, Method: Composition-based stats.
Identities = 62/387 (16%), Positives = 136/387 (35%), Gaps = 44/387 (11%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN------YSISRGAVLAAT 57
+L RY + L A++ + +++G++ S+S A L A
Sbjct: 3 LLTRYILREVLSH-------ALLGGVLFTFVLFTSRLGKILEIVVRNSASLSDVARLIAY 55
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW---QLLNPFVVGSILLGI 114
+P + IP LV ++ L SE+ RA G+ ++++ +G++ LG+
Sbjct: 56 FLPEALIVTIPMAVLVGILLGLSRLAADSEITAMRASGMGALDFVRIVSLVSIGALALGL 115
Query: 115 FTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-QDIFIGAKKILPEN 173
F L + P + + + +++ ++ ++ + ++I + + + P +
Sbjct: 116 FNSLYLAPRSAAN-------LLALENSLKYSQASFEVEPRVFDEDFKNIVLYVQDVRPGS 168
Query: 174 HIWEDFTSITID----KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
D KI A + + L Q+ P D N ++
Sbjct: 169 GAALWRHVFVADLTEPSAPKITTADQALVTSAGPGNLNLHLTDGAQHQISPTDANQYNIS 228
Query: 230 ------IPIKMDG-----FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR----AETQF 274
IP++ + + S E+I++ + + H+ R + +
Sbjct: 229 TFQVTDIPMQTGAQEDAHLSRSDTPILALSLPELIQRGNQAAAPGPKHDVRAARLYKIEL 288
Query: 275 YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
P + + L+ + L R + V I F+ Y + ++ + G L
Sbjct: 289 NKRFSYPFACLVLMLVGVPLGLSSKRGGKSTGFVLT-ILLVFVYYFLSSVGVALANQGKL 347
Query: 335 LPVAAALIPVILTISLSILILLQKEDG 361
PV ++ + L+L Q G
Sbjct: 348 PPVLGVWGANLIFAAFGALLLQQLSRG 374
>gi|220906932|ref|YP_002482243.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7425]
gi|219863543|gb|ACL43882.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7425]
Length = 374
Score = 181 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 58/368 (15%), Positives = 128/368 (34%), Gaps = 19/368 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY L+ + +L I + + +++ + R+P I
Sbjct: 9 IIDRYILAEMAMPFLFGVAVFTLLAATIGVVFDLLRWLADNRLTLAVALQILGLRLPEFI 68
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P L+ ++VF L R SELV + G+S+++L P ++ LL T + I
Sbjct: 69 ILALPMSMLLTPLLVFNTLGRRSELVALQGCGVSVYRLALPILLVGFLLAGLTFGLNETI 128
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI-GAKKILPENHIWEDFTSI 182
A + + ++ + + + I A++ + + T +
Sbjct: 129 APQTNYQALQIQTAALRRPQQKFREKNIFYREFVDNTLSRIFYARQF--DGQQMQRITIL 186
Query: 183 TIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTL-----------N 229
D + K+ A+ A + ++ Y + T++ +
Sbjct: 187 NFD-QGKLDQIIVANAAEWDQKQKHWDFQQGTVYSLTPNTESSSYTSIQPFQVTQLPLPS 245
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
P+++ + EQ + ++ + + R + P V L
Sbjct: 246 TPLQLATETRKIEQMNRWEATQFLRAIEQTGDQKWI--RRWKVGIQEKNAFPFTCVVFGL 303
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
I A++ L +Q + F Y + + S G+ G+L P+ AA + ++ +
Sbjct: 304 IGAALGLSSYNRSQTSRGFGLSLAMIFAYYLLNSTCISLGEGGLLSPLLAAWLSPLVGLL 363
Query: 350 LSILILLQ 357
+L +
Sbjct: 364 TGGWLLFR 371
>gi|126667524|ref|ZP_01738494.1| predicted Permease [Marinobacter sp. ELB17]
gi|126627950|gb|EAZ98577.1| predicted Permease [Marinobacter sp. ELB17]
Length = 353
Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 120/359 (33%), Gaps = 17/359 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY K ++ + L + + G NY +P I
Sbjct: 4 IDRYVMKTVGGAMFLVMVVVLSLDLIFAFIAELD--GTANNYQTLDALWYVFLTLPRRIY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + +V ++ +SEL + RA G+SI +++ + ++ + + V + +A
Sbjct: 62 DYLPLGAFMGCLVGLGSMASSSELTVIRAAGVSIKRIVWSAMKPALFVVLLGVGIGEYLA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+I G + W + + ++FI + P + +
Sbjct: 122 PPAERIAQSEKAVALGAGSNVAAASGLWHR----EGNVFIHMNAVQPSG-VLFGISMFRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-PIDKNSTTLNI-----PIKMDGFQ 238
+++ +++ A+ AI D L+ V + L P +
Sbjct: 177 NEQRQLLAASFAERAIYQGDHWILENVQTTELAEQGTTRVTHNQLRWESGLSPSVLSVLI 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
E A + + S R F+ ++PL M L+A S
Sbjct: 237 VKPENLAMTGLLTYARYLDEQGLS----ASRYWLAFWKKTLMPLGTAVMVLVAISFIFGP 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ G + ++ P+ A L+P+ + + IL++ +
Sbjct: 293 LRSVTMGFRVFTGLLVGLSFKYMQDLLGPMSVVYGFEPILAVLVPIAVNAGIGILLMRR 351
>gi|88810479|ref|ZP_01125736.1| putative permease [Nitrococcus mobilis Nb-231]
gi|88792109|gb|EAR23219.1| putative permease [Nitrococcus mobilis Nb-231]
Length = 358
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 63/360 (17%), Positives = 131/360 (36%), Gaps = 12/360 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + TL LL + L + + + G+ +Y++ + P
Sbjct: 2 KLIDRYIARNVTAGTLIVLLVIVSLDLLFNFLKESQDSGQ-GDYTVWLALLYVLLTTPYS 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
Q PF TL+ +++ L SELV+ R G+S + P V+ + L + + V
Sbjct: 61 AYQAFPFATLIGSLIGLGGLAARSELVVMRGTGMSALTIARPLVMAGLSLALLAMGVGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A +++ +L + + W + D ++ A+++ PE + ED
Sbjct: 121 LAPRTDRLATELQTRAVGGQLSAGGESGFWAR----DGDRYVHARQV-PEADVLEDLQIY 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMDGFQ 238
+ ++ H A A L V + + S +K D
Sbjct: 176 AF-QGVRLDHITTAWRAHYEQGVWMLLAPVTTHFAADGSVRVSRAASARYRSELKPDMLD 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ ++ + + N + R F+ + PL V M L+ +
Sbjct: 235 VVVVEPEVLPITQLWIYTRYLER-NGLDSSRYRLAFWVKVATPLATVTMLLLTVPLVFGS 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + G+ G + + ++ L P+ +AL P +L + +++ L++
Sbjct: 294 LRSANMGQRIFIGVLIGIAFFLLNRLLNRAAMVFGLPPLVSALGPTVLFLGIALGSLVRL 353
>gi|218438808|ref|YP_002377137.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
gi|218171536|gb|ACK70269.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
Length = 434
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 57/375 (15%), Positives = 136/375 (36%), Gaps = 20/375 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
P ++ RY + + + + V + +L+++ N++ E + + + RVP
Sbjct: 62 PSLMDRYLTSQLIPPFVLSVGIFTSMGVALANLSDLSNKVFEY-DLPVIDALKILLYRVP 120
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+P L+ ++ + L+ SEL+ R+ GIS+W+ P V+ S+++ T +
Sbjct: 121 EFFAYALPISVLLTTLMTYGRLSSESELIALRSCGISLWRATVPAVILSVIVSGITFVFS 180
Query: 121 NPIATSGEKIGIDLIQQ---WKDNGDKQKSDIIP-WMQISNPQQDIFIGAKKILP----E 172
+ +++ + + N + K P + ++ F K + +
Sbjct: 181 EGVVPETNYRATEILVKVLHEERNFWQNKDIFYPNYEEVKLANGQTFRQLKTLFYAEKFD 240
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYG-----RIPIDKNS 225
T I + +D A ++ Y + +
Sbjct: 241 GQKMRSLTIINWLGD-HLNEIVVSDSAQWNANQNIWDFFNGTVYLIDTDKSYKEAVPFKH 299
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLML 284
+P + F + ++ ++ S N R + + + I P +
Sbjct: 300 QQFPLPKEAFEFATQGRNPYEMNLFQALQYKRLLEASGDNKNVRFFDVRIHQKIAFPFVC 359
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ A++ + + ++ + + F Y + SFG G+L P+ AA +P
Sbjct: 360 LVFGIMGAAIGAKPQQMSR-GTSLGLTVGIVFSYYMLNFFTGSFGMIGLLSPMMAAWLPN 418
Query: 345 ILTISLSILILLQKE 359
+ + + IL + E
Sbjct: 419 LFGVGIGGWILKKLE 433
>gi|71908693|ref|YP_286280.1| permease YjgP/YjgQ [Dechloromonas aromatica RCB]
gi|71848314|gb|AAZ47810.1| permease YjgP/YjgQ [Dechloromonas aromatica RCB]
Length = 362
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 66/357 (18%), Positives = 132/357 (36%), Gaps = 18/357 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + + L + L + + +G+ YS+ A+ A +P ++ ++
Sbjct: 10 RYLIRETFASVFLVLAAFLALFAFFNFIDELRTVGK-AGYSVVHAALFVALSMPGLVYEL 68
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP TL+ + L R SE+ + RA G++ LL ++LL + T ++ +
Sbjct: 69 IPIATLIGTLYALSTLARHSEITVLRASGLATSDLLMTLFRAALLLALLTFVIGEAVVPF 128
Query: 127 GEKIGIDLIQQWKDNGDKQKS-DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
E++G ++ + Q D W++ FI +K P+ E
Sbjct: 129 SERLGKEIRAKALSTVIAQSGFDSGLWVK----DGRSFINIRKAAPDEP-LEGVRIYHFS 183
Query: 186 KKNKIIHRKDADLAIIYN-DKVKLKKVVEYQYGRIPIDKNSTTLN------IPIKMDGFQ 238
++N + DA A + D +L+ VV ST P +
Sbjct: 184 QQNLLESVTDAQAADFEDPDLWRLRGVVRTVLEGDTSRVESTQTGEWRSTVTPTLLAALM 243
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
E+ + K ++ + + R E + +V PL + M +A
Sbjct: 244 VSPERMSLFGLLNYTKHLTENKQK----TERYEIALWKKVVYPLAALVMVALALPFGYSH 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+R + + G+ G + Y + + + G P+ +A P L + ++ +L
Sbjct: 300 NRVGGVSLKIFAGVMLGILFYALNGLSSNLGAINSWSPIISATAPSGLFLLVATGML 356
>gi|320107369|ref|YP_004182959.1| permease YjgP/YjgQ family protein [Terriglobus saanensis SP1PR4]
gi|319925890|gb|ADV82965.1| permease YjgP/YjgQ family protein [Terriglobus saanensis SP1PR4]
Length = 782
Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 64/368 (17%), Positives = 125/368 (33%), Gaps = 14/368 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P +L Y + +L + L ++L V E+ + + +P
Sbjct: 416 PLLLDDYVMREFLTSLALVLSSFLVLSVVFSFFELIGDIIRN-RTPLVTVGGYLLNLIPY 474
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I + P L+ +V LNR+SEL +A G+S+++++ P V + +L + +
Sbjct: 475 MIYSLTPLCALIAVLVTVGGLNRSSELTAMKASGMSLYRIVAPIFVLAAVLAVGLFAFDD 534
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQ-KSDIIPWM--QISNPQQDIFIGAKKILPENHIWED 178
+ L + K + W+ Q +N + + ++ +
Sbjct: 535 LYLPQANRRQEALRSEIKGKPAQTFLRPDRKWISGQEANGSPTRIFYYQFFDSDKDVFAN 594
Query: 179 FTSITIDKK-NKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDK-----NSTTLNI 230
T + R A A + +++ + + I ST I
Sbjct: 595 LTVFEFQPGSFLLQRRIFATSARWNPQVQQWEMENGWQRTFNHESIATYQPFATSTFPEI 654
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
F+K S S+ ++ + +S F R Q I PLM + M +
Sbjct: 655 HELPAYFKKESRPSQEMSYGDLSAYIHDLKQSG-FDTMRLRVQLNHKIAYPLMTLVMAIF 713
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A ++ + A I I ++ +S G L P+ AA +L
Sbjct: 714 AVPFAMMMGKRGSLA-GYATAIGMAIAYQLIASVFESMGNVNALPPMLAAWSVDLLFALG 772
Query: 351 SILILLQK 358
+LL+
Sbjct: 773 GTYLLLRT 780
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 59/375 (15%), Positives = 120/375 (32%), Gaps = 35/375 (9%)
Query: 4 ILWRYFFKYYLK-TTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY + + L L +L DL I + + + + + +P
Sbjct: 3 ILTRYILREVVSHAMLGGALFTFVLFMQRDLGHILE-LAVRGSATPNDVGRILLYSLPAT 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF---VVGSILLGIFTVLV 119
+ IP LV ++ L+ SE+ RA G + Q + V ++L+G+ L
Sbjct: 62 LTFTIPMTVLVGILLGLGRLSADSEVTAMRASGFGVMQFVRVVSMSTVVALLVGLVNSLY 121
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
I P +T+ + ++ + + + Q +++ + IW+
Sbjct: 122 IAPKSTASLLRLENDLKSSQASFEVQPRVFY----EDFKNYVLYVQDTQPSQGATIWKHV 177
Query: 180 TSITIDKKNKI--IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI------- 230
+ + A +A+ ++L + + P D N ++
Sbjct: 178 FLADLTQPATPYITTANQAVVAVGKQQTLRLHFMDGSTHQISPTDPNQYNISTFAENDVP 237
Query: 231 -------PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
IK+ + ++ A + + P+
Sbjct: 238 MQAGQQEDIKLTRSDAPMAAMTAGQLWQ---------AQPGPQRRAAMIELNRRLSYPIA 288
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
V + L+ + L SR I F+ Y + ++ + K G L PV
Sbjct: 289 CVVLMLVGVPLGL-SSRRGGKSTGFVLTIVLVFLYYFLSSVGVALAKQGKLHPVIGVWAA 347
Query: 344 VILTISLSILILLQK 358
+L +L+L Q
Sbjct: 348 NVLFGFAGVLLLRQM 362
>gi|311694208|gb|ADP97081.1| permease YjgP/YjgQ family protein [marine bacterium HP15]
Length = 345
Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 54/353 (15%), Positives = 120/353 (33%), Gaps = 17/353 (4%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFI 70
+ ++ + L + + + NY I +P I +P
Sbjct: 2 RSVGGAMFLVMMVVLSLDLIFAFIAELDDIRN--NYQILDALWYVFLTLPRRIYDYLPLG 59
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
+ +V ++ +SEL + RA G+S+ +++ + ++++ + VL+ +A E++
Sbjct: 60 AFMGCLVGLGSMASSSELTVVRAAGVSLKRIVWSAMKPALVIVVLGVLIGEYLAPPAERV 119
Query: 131 GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
G S W + + D +I + P + + D ++
Sbjct: 120 AQSYKAVALGAGSNVASASGVWHK----EGDSYIHLNAVQPNG-VLHGVSRFQFDDDRQL 174
Query: 191 IHRKDADLAIIYNDKVKLKKVVEYQY-GRIPIDKNSTTLNI-----PIKMDGFQKFSEQF 244
+ A+ AI D L+ V + + + TL P + E
Sbjct: 175 LAASFAERAIYQGDHWLLENVRTTSFEDDRTVRVDDRTLRWETGLSPGVLSVLIVKPENL 234
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ Y + + + R F+ ++PL M L+A S RS
Sbjct: 235 SMTGLYTYATYLGEQS----LNASRYWLAFWKKALMPLGTAVMVLVAISFIFGPLRSVTM 290
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
V G+ G + + + P+ A L+P+ ++ +++ +
Sbjct: 291 GFRVFTGLLVGLLFKYMQDFLGPMSLVYGFNPMLAVLVPIAVSAVAGGILMRR 343
>gi|37520500|ref|NP_923877.1| hypothetical protein gvip124 [Gloeobacter violaceus PCC 7421]
gi|35211494|dbj|BAC88872.1| ycf84 [Gloeobacter violaceus PCC 7421]
Length = 387
Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 58/373 (15%), Positives = 132/373 (35%), Gaps = 29/373 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + L+ + + I ++ ++ + R+P II
Sbjct: 18 IMDRYLASELVLPFLFGVAAFASIGMAIGSLFELVRLISENGLPLTTALQVFLLRMPQII 77
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L ++ + L+ E+ +A G+SI +++ P ++ S+++ + T +
Sbjct: 78 TYTFPMSVLFATLLAYGRLSGDLEITALQASGVSILRVVVPTLLLSVIVSVITFFFNEVV 137
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ--------ISNPQQDIFIG---AKKILPE 172
+ + + + GD+ + + + ++ I A++
Sbjct: 138 VPTANQEASTTLARAIGGGDRPRFTKDNILYPEYNWVPGKAGEREYALIRLFYARRYSDG 197
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDKNSTTLN- 229
I T + ++N + AD A D + + Y G +N
Sbjct: 198 --IMYGLTILDYSQEN-LNQVITADSAYFDPKTDAWRFRNGTSYLIGNDGTYRNILQFQE 254
Query: 230 -------IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
P+K + E+ + I+ + + Y IP
Sbjct: 255 QQVKISEDPLKFAQEVRRPEEMTTVELRRYIELAQNARQ----EIRGLLVSLYQKYAIPS 310
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ A L+ A + L R++ + + I F Y + I ++ G++G+L P A +
Sbjct: 311 VCFAFALVGAPLGLRRQRTSN-ALGLGLSILIIFSYYIFLFIAQALGQTGVLPPWLGAWL 369
Query: 343 PVILTISLSILIL 355
P ++T+++ +L
Sbjct: 370 PALITMAVGAYLL 382
>gi|218961269|ref|YP_001741044.1| putative Permease [Candidatus Cloacamonas acidaminovorans]
gi|167729926|emb|CAO80838.1| putative Permease [Candidatus Cloacamonas acidaminovorans]
Length = 362
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 63/362 (17%), Positives = 131/362 (36%), Gaps = 9/362 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y + +L+T L L + + VID+ + ++ + + + R+P ++
Sbjct: 3 ILDKYIIREFLRTYLIIFLSFVAIFVVIDVIDNLPRLIRN-GATAQQATIYYLMRLPYLL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ + + L++ +E + RA GISI + + P +++ I + +
Sbjct: 62 VLTSPVTVLLTGLFMMSALSKHNESIAIRAAGISIKRAMLPLFGIGLIISIAVAVFGEYV 121
Query: 124 ATSGEKIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
E + Q K + + G N D T I
Sbjct: 122 VPWAETTKNYVYNVQIKGQQPDDQMLKARIHYQGKANDFYYFGFFDGYKNNLKIIDLTRI 181
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKMDGF 237
K +I A A + LK ++ + + + ++ F
Sbjct: 182 DF-KTKQITEHITASSADWNGSRWILKDCDLRRFANGKQVFMAHYPQTDLVILDVQPQDF 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ S++ S +F+++ + + K + R + I PL + + ++
Sbjct: 241 IRISQKTLSLNFWQLKEYIGR-MKKLGDNAAREIVDLHMKISFPLTNLIVIFFFIPIATS 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS I+ G+ F+ ++ + +S G + I+ P AA P I L + L +
Sbjct: 300 NIRSKGRGWIIMLGLVVCFIYLIVVRVCQSLGYNSIINPFWAAWFPNIFFTLLGLGFLHK 359
Query: 358 KE 359
E
Sbjct: 360 AE 361
>gi|237745417|ref|ZP_04575897.1| permease YjgP/YjgQ family protein [Oxalobacter formigenes HOxBLS]
gi|229376768|gb|EEO26859.1| permease YjgP/YjgQ family protein [Oxalobacter formigenes HOxBLS]
Length = 382
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 69/378 (18%), Positives = 127/378 (33%), Gaps = 28/378 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RYFF +K+ ++ L+ + L DL + +G Y + V P
Sbjct: 2 KILQRYFFSQIVKSVVFILVAFLGLFAFFDLISELSSVGR-GGYQLHHVFVYILLGFPGY 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +++PF L+ I SE I R +S ++ +FT LV
Sbjct: 61 IYELMPFAVLIGTIYAMALFASNSEFTIMRVSSLSTRDACWMLAKVGLVFLVFTFLVGEV 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPW----MQISNPQQDIF----IGAKKILPENH 174
+ ++ + K W ++ + + +I + K + P+
Sbjct: 121 LTPYTSRMASEFRNNLIGRNLSDKFRTGMWSKDTIRENGREGEIIGSRFMNIKTMRPDGT 180
Query: 175 IWEDFTSITIDKKNKIIHRKDADLA-IIYNDKVKLKKVVE------------YQYGRIPI 221
I E +++ +++ A + N + +L VVE P+
Sbjct: 181 I-EQIKLYEFNRELELVKTVTAQNGHYLGNHEWQLNGVVESLIKSSGKSKGKRFPDSAPV 239
Query: 222 ----DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
++S L + D S S YE+ + N + F+
Sbjct: 240 VDTEKRDSIRLVSDVTPDILSVISVDANKMSAYELAVYNRHLVE-NKQDATSYQIAFWKK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
I+ P + M +A + RS + + GI G I + G P
Sbjct: 299 IIYPFSVFVMMALALPFAYLHFRSGGVSLKIFTGIMIGVAFILINNLFSHVGLLNTWPPF 358
Query: 338 AAALIPVILTISLSILIL 355
A+IP +L + ++ L
Sbjct: 359 LTAVIPSVLFLLSAVFAL 376
>gi|116747638|ref|YP_844325.1| permease YjgP/YjgQ family protein [Syntrophobacter fumaroxidans
MPOB]
gi|116696702|gb|ABK15890.1| permease YjgP/YjgQ family protein [Syntrophobacter fumaroxidans
MPOB]
Length = 360
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 48/359 (13%), Positives = 128/359 (35%), Gaps = 17/359 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY +++L + L L ++D E Q E + + P +
Sbjct: 3 IIPRYVLRHFLPVFMLALFTFTSLYLIVDFFENMEQFIEK-RVPAADTIAYFLNKTPSVA 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q IP L+ ++ L R EL+ A G+ + P V + + +++ +
Sbjct: 62 AQGIPMAALLGALITLGLLKRNRELIALEAAGVKTVTYVTPIVAAAFFIAAVHLVLGETV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPW--MQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ S ++ + + +++ W + Q++ + E +
Sbjct: 122 SRSMNQVSTKIWNEQ----VQRRKGHFSWGVENVWYHGQNVIYQVRFYDKRTQTLEKVSL 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS------TTLNIPIKMD 235
+D +++ R DA + + ++ + ++ ++ + T P
Sbjct: 178 FFLDPSFRLVQRLDARRFRWDGARWQAEQGLFLKFSESGTEQETFDQRAFTLQETPADFS 237
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
G + E+ Y +K+ + +++ + + + PL + + ++ ++
Sbjct: 238 GLETIPEELDWLDLYRYAEKI----RQEGYNSLPYIIELHLRVAFPLSAIVLAILGIIIA 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L S + V G+ G + + + + +G L PV ++ ++ ++ +
Sbjct: 294 LRQSMHGGIALGVGIGLLVGSSYFVVQQLGCALAGAGALPPVVGVWAANVIFLAAAVYL 352
>gi|120611823|ref|YP_971501.1| permease [Acidovorax citrulli AAC00-1]
gi|120590287|gb|ABM33727.1| permease YjgP/YjgQ family protein [Acidovorax citrulli AAC00-1]
Length = 365
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 54/356 (15%), Positives = 129/356 (36%), Gaps = 18/356 (5%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
++ L + LG + L F D+ + +G + Y +S + + +P + +++P
Sbjct: 8 IYREALAAVGFVTLGFLALFFFFDMVDELRYVGRVQGYQMSHALLYVSLGIPSHLYELLP 67
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L+ I V ++SE I R G+ W L +V + + T V + +A + +
Sbjct: 68 ITVLIGTIFVMARFAQSSEFTIMRTSGLGPWSALRTLLVLGLGFVMLTFTVGDYLAPATD 127
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
++ + ++ G W++ + + + + + + + D
Sbjct: 128 RLAQLVRARYL--GQITTGATGAWLKERQGDRSVAVNVRALRHDGG-MSNVRIFEFDGDG 184
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGR--------IPIDKNSTTLNIPIKMDGFQKF 240
++ A D +L+ V + R + + S I D
Sbjct: 185 RLASTVQAAAGEFGADAWELRDVKRSVFHRRGEAEAHVERLQEASFRWPTHISSDMVAAS 244
Query: 241 ---SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ A+ ++ I+ + + ++ + E +F+ + P+ + M +++ +
Sbjct: 245 LLKPDRMATIDLFQYIRHLESNGQA----AQKYEIEFWRKVFYPMSCLVMVVLSLPFAYL 300
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS V G+ +G + + + G P A P I+ LS+
Sbjct: 301 HFRSGGIAGYVFGGVMAGISFFLLNNVFGYAGNLQNWSPWLTAAAPGIIYSLLSLG 356
>gi|192358887|ref|YP_001981939.1| putative permease, YjgP/YjgQ family [Cellvibrio japonicus Ueda107]
gi|190685052|gb|ACE82730.1| putative permease, YjgP/YjgQ family [Cellvibrio japonicus Ueda107]
Length = 352
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 62/355 (17%), Positives = 133/355 (37%), Gaps = 20/355 (5%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + LL + L F+ + ++ Y+ + + VP + ++I
Sbjct: 7 YISRTVFSAIALTLLVFISLDFIFSFIDQLGKI--RGGYTSREAFIYMSLTVPRRLYELI 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P+ L+ ++V L +SEL + RA G+S+ ++ + + + + V++ +A
Sbjct: 65 PYSCLIGSLVGLGLLANSSELTVIRAAGVSVKRIAWMALRPAFVFIVAAVILGEYVAPYT 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
E++ + +DN + +++ W + N ++ + +LP I T D++
Sbjct: 125 EQMADNRRLLVRDNWVRTTTNM--WNREGNE----YMHVQAVLPSGVI-YGLTRYQFDEQ 177
Query: 188 NKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQKF--- 240
+++ AI + + V + G + + S P+K +
Sbjct: 178 RRLVAASYTKQAIYQEEGYWQEEDVAVTRIGEQGVSNDLLPSRRWETPLKPNLLNILVMD 237
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
E + + + N F+ + PL +++ LIA S R
Sbjct: 238 PEDMSISNLNYYSNYLKEQNLRPGN----YALAFWQKTLQPLATMSLVLIAISFIFGPLR 293
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
S + GI G + +M PV A LIP+++ I + + +L
Sbjct: 294 SVTMGQRIFTGIVFGVGFQLLQKLMGPASMVFGFAPVFAVLIPIVICILVGVFLL 348
>gi|326316898|ref|YP_004234570.1| permease YjgP/YjgQ family protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323373734|gb|ADX46003.1| permease YjgP/YjgQ family protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 365
Score = 179 bits (455), Expect = 5e-43, Method: Composition-based stats.
Identities = 53/356 (14%), Positives = 128/356 (35%), Gaps = 18/356 (5%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
++ L + LG + L F D+ + +G + Y +S + + +P + +++P
Sbjct: 8 IYREALAAVGFVTLGFLALFFFFDMVDELRYVGRVQAYQMSHALLYVSLGIPSHLYELLP 67
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L+ I V ++SE I R G+ W+ L +V + + T V + +A + +
Sbjct: 68 ITVLIGTIFVMARFAQSSEFTIMRTSGLGPWRALRTLLVLGLGFVMLTFTVGDYLAPATD 127
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
++ + ++ G W++ + + + + + + + D
Sbjct: 128 RLAQLVRARYL--GQITTGATGAWLKERQGDRSVAVNVRALRHDGG-MSNVRIFEFDGDG 184
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN------STTLNIPIKMDGFQK--- 239
++ A D +L V + R + + P +
Sbjct: 185 RLASTLQAAAGEFGTDAWELSDVKRSVFHRRGEAEAHVERLQESRFRWPTHISADMVAAS 244
Query: 240 --FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ A+ ++ I+ + + ++ + E +F+ + PL + M +++ +
Sbjct: 245 LLKPDRMATIDLFQYIRHLESNGQA----AQKYEIEFWRKVFYPLSCLVMVVLSLPFAYL 300
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
RS V G+ +G + + + G P A P I+ LS+
Sbjct: 301 HFRSGGIAGYVFGGVMAGISFFLLNNVFGYAGNLQNWSPWLTAAAPGIIYSLLSLG 356
>gi|87121691|ref|ZP_01077578.1| permease YjgP/YjgQ [Marinomonas sp. MED121]
gi|86162942|gb|EAQ64220.1| permease YjgP/YjgQ [Marinomonas sp. MED121]
Length = 353
Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats.
Identities = 70/357 (19%), Positives = 142/357 (39%), Gaps = 13/357 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K + + + L +V+ E ++ E Y+IS + R+P
Sbjct: 4 LDSYIGKGVVWAFFAVVFILLGLDYVLTFIEQVKRISEF--YTISNLLEVLLLRLPSKFA 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ IP +L+ +V L TSEL + RA GI IW++ + +++ + V + IA
Sbjct: 62 EYIPIASLIGTLVGLGALASTSELTVIRAAGIPIWRIGWSAIKPILIISLIGVGISEFIA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ ++ + K W++ + ++ IFIGA + +
Sbjct: 122 PNADQRANLIENLKKQQTSDNIISGGVWIR--SEEKYIFIGAA---DQKGTLYNVKVFN- 175
Query: 185 DKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQKF 240
K + + A A D+ L +V Q+ I+ N+T +L + K +
Sbjct: 176 SKNQTLQSTQIAKTAQYKTADEWTLNQVTNTQFLADKIESNNTNFESLTMTFKPEHLYLA 235
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+++ + S + I ++ + R E +F+ + P+ +A+ LIA S R
Sbjct: 236 TQEPEALSLSQSISYQNYLE-GQDLNTSRYELEFWTKALRPVASIALVLIALSSVFGPLR 294
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
S+ + G+ G + + + + P+ LIP+ + +++ L L +
Sbjct: 295 SSTMGSRIFSGVMIGIIFQNGLNLFGRMSLAADFSPLLGVLIPIAICLAIGTLQLKR 351
>gi|330824939|ref|YP_004388242.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans
K601]
gi|329310311|gb|AEB84726.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans
K601]
Length = 366
Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats.
Identities = 63/360 (17%), Positives = 129/360 (35%), Gaps = 21/360 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R ++ + + L + L F DL + +G Y +S + A +P + ++
Sbjct: 6 RLIYREVIVGVAFVTLAFLALFFFFDLVDELRWVGSN-GYRMSHALLFVALSLPQHLYEL 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I V L ++SE I R G+ W+ L+ + T V + +A
Sbjct: 65 LPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALSTLLALGCAFVALTFAVGDYLAPI 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E+ + Q G W++ + + + P+ H D D
Sbjct: 125 SERAAALVRAQQL--GQISTGATGAWLKERQGDHSFAVNVRALTPDGH-MRDVRVFEFDA 181
Query: 187 KNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIP--------IDKNSTTLNIPIKMDG 236
+ ++ A A + D L++V + + P + + L+ I D
Sbjct: 182 RGRVASTTVAAQATFDDSGDAWNLEQVKRSVFEQRPNGDIRVTRRQEPTLLLHTRISPDM 241
Query: 237 FQKF---SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
++ A+ + I+ + + +S R E +F+ + PL + M +++
Sbjct: 242 VAASLLKPDKMATIGLFHYIRHLEANGQS----AQRYEIEFWRKVFYPLSCLVMVVLSLP 297
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ RS V G+ +G + + + G P A P ++ LS+
Sbjct: 298 FAYLHFRSGGIAGYVFGGVMAGISFFLLNNVFGFAGNLQNWSPWLTAAAPGLIYSLLSLA 357
>gi|319762859|ref|YP_004126796.1| permease yjgp/yjgq family protein [Alicycliphilus denitrificans BC]
gi|317117420|gb|ADU99908.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans BC]
Length = 366
Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats.
Identities = 63/360 (17%), Positives = 129/360 (35%), Gaps = 21/360 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R ++ + + L + L F DL + +G Y +S + A +P + ++
Sbjct: 6 RLIYREVIVGVAFVTLAFLALFFFFDLVDELRWVGSN-GYRMSHALLFVALSLPQHLYEL 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I V L ++SE I R G+ W+ L+ + T V + +A
Sbjct: 65 LPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALSTLLTLGCAFVALTFAVGDYLAPI 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E+ + Q G W++ + + + P+ H D D
Sbjct: 125 SERAAALVRAQQL--GQISTGATGAWLKERQGDHSFAVNVRALTPDGH-MRDVRVFEFDA 181
Query: 187 KNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIP--------IDKNSTTLNIPIKMDG 236
+ ++ A A + D L++V + + P + + L+ I D
Sbjct: 182 RGRVASTTVAAQATFDDSGDAWNLEQVKRSVFEQRPNGDIRVTRRQEPTLLLHTRISPDM 241
Query: 237 FQKF---SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
++ A+ + I+ + + +S R E +F+ + PL + M +++
Sbjct: 242 VAASLLKPDKMATIGLFHYIRHLEANGQS----AQRYEIEFWRKVFYPLSCLVMVVLSLP 297
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ RS V G+ +G + + + G P A P ++ LS+
Sbjct: 298 FAYLHFRSGGIAGYVFGGVMAGISFFLLNNVFGFAGNLQNWSPWLTAAAPGLIYSLLSLA 357
>gi|254786689|ref|YP_003074118.1| SecD export membrane protein [Teredinibacter turnerae T7901]
gi|237687240|gb|ACR14504.1| SecD export membrane protein [Teredinibacter turnerae T7901]
Length = 354
Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats.
Identities = 61/360 (16%), Positives = 121/360 (33%), Gaps = 18/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + + LL + L + DL + +Q+ +Y+ +P +
Sbjct: 4 LQRYIAAQVWGSVMGVLLVIVSLDAIADLVDQLSQL--KGDYTFLEALFYVVLYIPSSVC 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P LV ++ L +SELV+ RA G+S+ QL+ + +L I LV ++
Sbjct: 62 DYLPLAALVGCLIGLGLLANSSELVVMRAAGVSVRQLIWSVMRPVLLFIIVGALVGEYVS 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ + + +S+ W + + ++ +LP T
Sbjct: 122 PYTDQYADSRRDLLQGHERALQSERGLWFREGSE----YMHFNAVLPNG-RLYGITRYKF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP-------IDKNSTTLNIPIKMDGF 237
++ AI D + Q+ I +N T P ++
Sbjct: 177 ADGGRLEQASFIRSAIYQGDHWVEQGGEITQFDAEDKVDREEFISRNWYTEISPSLLNVL 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + Y N + F+ + PL +++ +IA S
Sbjct: 237 VLDPDELPMQRLYAYANYQEKQN----IDSSEYRLAFWQKALQPLATLSLVMIAISFIFG 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R V G+ G + T + P+ A LIP+ + L++ +
Sbjct: 293 PLRQTTMGFRVFIGVIVGLVFQTSQKLFGPMSIIMGFSPMFAVLIPIAFCFAFGWLLIKR 352
>gi|222110916|ref|YP_002553180.1| permease yjgp/yjgq family protein [Acidovorax ebreus TPSY]
gi|221730360|gb|ACM33180.1| permease YjgP/YjgQ family protein [Acidovorax ebreus TPSY]
Length = 369
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 129/359 (35%), Gaps = 16/359 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP--NYSISRGAVLAATRVPLIIQ 64
R+ ++ + + L + L F D+ + +G Y +S + A +P +
Sbjct: 6 RFIYREVVVGVAFVTLAFLALFFFFDMVDELRWVGRAGANGYQLSHALLFVALSLPQHLY 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ I V L ++SE I R G+ W+ L+ ++ + TV+V + IA
Sbjct: 66 ELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALSTLLMLGCAFVMVTVIVGDYIA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ EK + + + G W++ I + + + P
Sbjct: 126 PASEKAAS--LVKARRLGQISTGATGAWLKERQGDHSIAVNVRAVDPNGA-MRGVRVFEF 182
Query: 185 DKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIP--------IDKNSTTLNIPIKM 234
D + ++ A+ A + D L++V + + + + I
Sbjct: 183 DARGRVAATIQAEQATFDDARDAWNLQQVERTLFEAEADGGMRVSRLQEPTLRWPTRISP 242
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D + + E+ + + +N R E +F+ + PL + M +++
Sbjct: 243 DMVAASLLKPDKMATIELFRFVRHLE-ANGQSAQRYEIEFWRKVFYPLSCLVMVVLSLPF 301
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ RS V G+ +G + + + G P A P ++ LS+
Sbjct: 302 AYLHFRSGGIAGYVFGGVMAGISFFLLNNVFGFAGNLQNWSPWLTAAAPGLIYSVLSLA 360
>gi|317402625|gb|EFV83184.1| membrane protein [Achromobacter xylosoxidans C54]
Length = 392
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 61/370 (16%), Positives = 125/370 (33%), Gaps = 20/370 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + ++ L+ + L L + + +G+ +S+ + A +P + +
Sbjct: 6 RYLAREIYRSCAVVLMALLGLFTFFALVDDLDNVGDK--FSMMALLYMQALAIPTRLYDL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I+ L + +ELVI R G+S +LL + +I L I L+ +
Sbjct: 64 LPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLRMLWIVTIPLMIGAALLSEYVTPW 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E + ++ + + W + I L + T K
Sbjct: 124 AEMKSGEANLMFRGKAGGDRLNSGYWFKEPTANGGTRIINIAALQGDGQVTGVTLYEFKK 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-----------------NSTTLN 229
+ A + + + LK V E + + T++
Sbjct: 184 DLTLSVLSTAPNGLFAHGDLVLKDVSETRLDDNAAETLADARPPKNPPAVVVKVPERTVD 243
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ + S ++ + + + + + R + + P L+ M
Sbjct: 244 TTLSAERLLARVLTPERMSIVTLLDYVDYLRNNQLQYG-RQVVALWRKLAYPFTLLVMIT 302
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
IAA + L +R V GI G + + + + G G P AL P I ++
Sbjct: 303 IAAPIGLMQTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLGKWPPWLTALGPNIGAMA 362
Query: 350 LSILILLQKE 359
L++ + E
Sbjct: 363 LALGAMSYME 372
>gi|110833358|ref|YP_692217.1| hypothetical protein ABO_0497 [Alcanivorax borkumensis SK2]
gi|110646469|emb|CAL15945.1| membrane protein, putative [Alcanivorax borkumensis SK2]
Length = 353
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 56/358 (15%), Positives = 124/358 (34%), Gaps = 11/358 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RYF++ + TL L + L + + NY + T P
Sbjct: 2 KLLKRYFWRAVMIPTLAILFIIVGLDCLFGFIYELEFL--RGNYQVMEALQFILTTTPRR 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ ++ L + EL + RA G+S ++ + ++L I ++ +
Sbjct: 60 FYEYMPMAILLGTLIGLSLLANSGELSVIRAAGVSTLKVSWLVLRPVLVLIILSIPLGEY 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ E++ + G+ +S W + + FI + P + T
Sbjct: 120 LTPYSEQVAQSNRSMAEGGGEALRSKYGYWHR----EGPEFIHINAVQPNG-VLHGLTRY 174
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV---VEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
K+ + + AI + L+ + + K+ +
Sbjct: 175 RFSDGQKLTETQYVNRAIYQGESWSLEGIQGTRLFADHVETYQKDQGEWQTELTPQLLSI 234
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + ++++ + + + F+ + +PL + M LIA S
Sbjct: 235 VVLKPDNLALVKLLEYTRYLKRQGL-ETADYMLSFWQKLFMPLATIGMVLIAISFVFGPL 293
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + GI +G + + P+ AA++P L + L I +L +
Sbjct: 294 REVTMGLRLTAGIVAGLIFHYGQQFFGQLSLVFHTDPLLAAILPPSLCLVLGIWLLQR 351
>gi|319941841|ref|ZP_08016163.1| hypothetical protein HMPREF9464_01382 [Sutterella wadsworthensis
3_1_45B]
gi|319804774|gb|EFW01641.1| hypothetical protein HMPREF9464_01382 [Sutterella wadsworthensis
3_1_45B]
Length = 377
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 56/372 (15%), Positives = 130/372 (34%), Gaps = 23/372 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ R F K L +T++ L+ + L DL + +G +Y+I R + + +P
Sbjct: 3 VISRQFAKDILLSTIFVLIVLIALFAFFDLIGQLDDLG--ADYTIGRAFLTTSLTLPSRA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P L+ ++ TSE + RA G S W+L ++ ++ + T + +
Sbjct: 61 YEVMPLAVLLASVYTMSKWASTSEFTVLRASGCSPWRLARSLLIPGVICVLATYGLGEIV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI-----SNPQQDIFIGAKKILPENHIWED 178
A + ++ ++ + + W++ + + + +I + + +
Sbjct: 121 APAAQRFAQEVRSGTNASLSIRGFASGAWVRDVINSPEDGRVERYINVRNLSASDRQLTG 180
Query: 179 FT-SITID-KKNKIIHRKDADLAIIYNDKVKLKKVV------EYQYGRIPIDKNSTT--- 227
+ +++ A+ +L V P + TT
Sbjct: 181 AWRMFEFNRDDGRLLRLVRAESGRWTGTGWELTNAVIIHYPAVTATKDAPQQGSVTTEHV 240
Query: 228 ----LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
L + D + + S E+ + + ++ + F+ P +
Sbjct: 241 DALKLTSTVNPDILSVMTTKPDRMSMDELNRFIEHLDQ-VHQDTEHYVSVFWSKAFYPFI 299
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M +A + +RS + + G+ G Y + I + P A +P
Sbjct: 300 CLVMLAVAMPFAYMNARSGGMAVKIFCGVLVGIAFYALNNIFLYLSVLSSMPPALMAALP 359
Query: 344 VILTISLSILIL 355
IL + L L
Sbjct: 360 SILMCFAAALSL 371
>gi|121594279|ref|YP_986175.1| permease [Acidovorax sp. JS42]
gi|120606359|gb|ABM42099.1| permease YjgP/YjgQ family protein [Acidovorax sp. JS42]
Length = 369
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 130/359 (36%), Gaps = 16/359 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP--NYSISRGAVLAATRVPLIIQ 64
R+ ++ + + L + L F D+ + +G Y +S + A +P ++
Sbjct: 6 RFIYREVVVGVAFVTLAFLALFFFFDMVDELRWVGRAGANGYQLSHALLFVALSLPQLLY 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ I V L ++SE I R G+ W+ L+ ++ + TV+V + IA
Sbjct: 66 ELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALSTLLMLGCAFVMVTVIVGDYIA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ EK + + + G W++ I + + + P
Sbjct: 126 PASEKAAS--LVKARRLGQISTGATGAWLKERQGDHSIAVNVRAVDPNGA-MRGVRVFEF 182
Query: 185 DKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIP--------IDKNSTTLNIPIKM 234
D + ++ A+ A + D L++V + + + + I
Sbjct: 183 DARGRVAATIQAEQATFDDARDAWNLQQVQRTLFEAEADGGMRVSRLQEPTLRWPTRISP 242
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D + + E+ + + +N R E +F+ + PL + M +++
Sbjct: 243 DMVAASLLKPDKMATIELFRFVRHLE-ANGQSAQRYEIEFWRKVFYPLSCLVMVVLSLPF 301
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ RS V G+ +G + + + G P A P ++ LS+
Sbjct: 302 AYLHFRSGGIAGYVFGGVMAGISFFLLNNVFGFAGNLQNWSPWLTAAAPGLIYSVLSLA 360
>gi|92115032|ref|YP_574960.1| permease YjgP/YjgQ [Chromohalobacter salexigens DSM 3043]
gi|91798122|gb|ABE60261.1| permease YjgP/YjgQ [Chromohalobacter salexigens DSM 3043]
Length = 354
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 61/364 (16%), Positives = 129/364 (35%), Gaps = 18/364 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ RY + L L + + L VI + +Y + R+P
Sbjct: 2 IFDRFDRYIARNVLAAMLVVQVMILGLDLVISYINDLGDVE--GDYGALDVLLYLLMRLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
Q P L+ ++ ++ ++EL + RA G S+ ++L + L+ I T+ +
Sbjct: 60 WRFYQYAPVGVLIGALIGLGSMASSNELTVMRASGRSLARILWGAMKPLGLVIIVTMAIS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ E+ + + S+ W + + F I ++ + D T
Sbjct: 120 EWVSPVTEQYAEAWRLEQLEGEGAILSERGGWQREGDD----FYRFGTIRADD-VVIDVT 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKV--VEYQYGRIPID----KNSTTLNIPIKM 234
D +++ AD A+ + + V ++ GR +D + T P ++
Sbjct: 175 RYHFD-GTQLVSATHADRAVWEDGSWQWVNVDTTRFEDGRTVVDSQPRQAWETSFTPAQL 233
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + E + + + + F+ +++P L + L+AAS
Sbjct: 234 NRLLRPLESQSPSDLWRYASYLGNQG----LEATQPLLYFWQKMLLPFTLAGLMLVAASF 289
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R+ V YGI G + ++ P+ A L+P + L I++
Sbjct: 290 VFGPLRTVAAGTRVFYGIIVGVSFKYLQDLLAPASMLFGFSPIFAVLVPTVACYVLGIVL 349
Query: 355 LLQK 358
L +
Sbjct: 350 LRRT 353
>gi|332969353|gb|EGK08378.1| YjgP/YjgQ family permease [Kingella kingae ATCC 23330]
Length = 354
Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 60/363 (16%), Positives = 138/363 (38%), Gaps = 18/363 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + Y L + L IDL +G+ NY+++ A ++P
Sbjct: 2 KLLSRYIITRLSLMSAYALFAILSLYSFIDLLSEIGIVGQ--NYTMAVALQYIALQMPAR 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
Q++P TL+ ++ L +SE + + G S +L+ + + +FT+L+
Sbjct: 60 AYQLMPLATLIGGLIALNQLVSSSEWAVIKTSGWSSKRLIGTILQFGAIFAVFTILLGEW 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA + G + + + W++ N I +LP+ + D
Sbjct: 120 IAPELSRRGDAIKTLARSQQTTLVHN-GVWIKQPN----SMINIGAMLPDKTLL-DVKIW 173
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-----STTLNIPIK-MDG 236
+ + ++ A A N + +L +V + I + + NI +D
Sbjct: 174 QFNDQYQLTESVYAKQARFANGQWQLNQVQSSELADKQIRTSQQGQRTWQFNIQSNMLDV 233
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
EQ + + + I + + + + ++ +V P+ + M L+A + +
Sbjct: 234 LMVKPEQMSFINLTQYIGYLKDNKQQ----TEAYDVAWWNKLVYPIATMVMALVALAFTS 289
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + GI G + + + + + +A++P + ++ +++
Sbjct: 290 NSGRHGNLGLKLFGGICLGLLFFFTGRLFGFTTQLYRVPAFVSAVLPTLGFALWAMWLIV 349
Query: 357 QKE 359
++E
Sbjct: 350 KQE 352
>gi|114319721|ref|YP_741404.1| permease YjgP/YjgQ family protein [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226115|gb|ABI55914.1| permease YjgP/YjgQ family protein [Alkalilimnicola ehrlichii
MLHE-1]
Length = 360
Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 59/365 (16%), Positives = 122/365 (33%), Gaps = 15/365 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY + + L L+ M L V + +G +Y P
Sbjct: 1 MIRLLDRYLIITVVASALVALVVIMSLDLVFSFVDEGGDIGT-ADYGPLSALAYVLLSSP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ PF TL+ ++ L +EL + RA G+S+ Q+ G ++L + + +
Sbjct: 60 SRAYEAFPFATLIGALMGLGALAARNELTVMRAAGVSVLQIARAVAAGGLVLALIAMAMG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ E+ +L W + FI ++ H E T
Sbjct: 120 EWVVPPAERAATELRASAMARDVGISGAGGLWARDGGQ----FIEVRRARSPAH-LEGLT 174
Query: 181 SITIDKKN----KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID----KNSTTLNIPI 232
++++ + A+ + + L++ E I + +
Sbjct: 175 IYHFEERDGEPMTLRRVLSGSEALFRDGRWILREPGEVHLHADGISVADLGDEKVWESAL 234
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
S S ++ + + + + F+ + P+ +AM L+
Sbjct: 235 SPAVLDVVVVDPESLSMADLRTYIGYLEANELDSGEW-RLAFWVKVATPISTLAMLLLTI 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ RS + G+ G + + ++ G L P A+AL+P ++ I
Sbjct: 294 PLVFGAVRSTGAGQRIFIGVLIGVAFFLVNRMLNHAGVVFGLPPSASALLPAFAFLAAGI 353
Query: 353 LILLQ 357
L +L+
Sbjct: 354 LGILK 358
>gi|121611823|ref|YP_999630.1| permease [Verminephrobacter eiseniae EF01-2]
gi|121556463|gb|ABM60612.1| permease YjgP/YjgQ family protein [Verminephrobacter eiseniae
EF01-2]
Length = 369
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 58/362 (16%), Positives = 129/362 (35%), Gaps = 22/362 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMG--ELPNYSISRGAVLAATRVPLIIQ 64
R + L + G + L F DL + +G Y +S + A +P +
Sbjct: 6 RLIHREALSAVCFVTAGFLALFFFFDLIDELRWVGLAGREGYHLSHALLFVALGIPSHLY 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ I V L ++SE I R G+ W+ L + + T V + +A
Sbjct: 66 ELLPITVLIGTIFVMARLAQSSEFTIMRTSGMGPWRALRTLLTLGGFFVLLTFAVGDYLA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ + + G W++ + + + + P D
Sbjct: 126 PWTDRTAQRI--KAHALGGLTSGATGAWLKERQDRHSFAVNVRALTPNGG-MRDVRIFEF 182
Query: 185 DKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIP-------IDKNSTTLNIPIKMDG 236
D + +++ + A + + +L +V ++ R ++ L P ++
Sbjct: 183 DDQGRLVTQTRATVGRFATDGAWELAQVRRSRFARGDGQDDARVEHLDAPALRWPTRISA 242
Query: 237 FQK-----FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
++ A+ ++ I+ ++ + +S R +F+ + PL + M ++A
Sbjct: 243 DMVAASLLKPDRMATLDLFQFIRHLNANGQS----TQRYAIEFWRKLFYPLSCLVMVVLA 298
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+ RS V G+ +G + + + G P A P ++ LS
Sbjct: 299 LPFAYLHLRSGGTAGYVFGGVMAGISFFLLNNVFGYAGNLQNWSPWLTAAAPGLIYSLLS 358
Query: 352 IL 353
+
Sbjct: 359 LA 360
>gi|295690098|ref|YP_003593791.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
gi|295432001|gb|ADG11173.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
Length = 353
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 69/361 (19%), Positives = 137/361 (37%), Gaps = 17/361 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y + L L M ++ ++DL ++ + + ++ A AA R+P + +
Sbjct: 3 LQLYVLRTVATRILGAALILMSILQILDLLDVTTDILDR-GLGMAGVAYYAALRLPRLFE 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL---LNPFVVGSILLGIFTVLVIN 121
Q+ P L + F L R S +V RA GIS +++ P V+ +LL V+
Sbjct: 62 QVAPIAVLAGGLFAFSQLARESAVVAMRASGISGYRIVGMAMPAVIAVMLLDALCGQVLA 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
P + W N P + D+ IGA + T
Sbjct: 122 P-------RSDPTLADWWRNTTPVAERKAPSPRTFRAGSDLVIGAD-ASADGREITSLTI 173
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-GRIPIDKNSTTLNIP--IKMDGFQ 238
+ K ++ + +A A+ + L+ ++ G + + ++N P ++ Q
Sbjct: 174 FRRNAKGILVEKVEASKALYDGRRWTLQSPKTTRFAGDLAQTSTAASINWPTALRPQDVQ 233
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
++ + + + + T F P + + M L++A V+L
Sbjct: 234 GLFGDDSAPTAATARRALENGG--SDRPESFYATHFQSAFASPFVSLVMLLLSAPVALAN 291
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS Q +++ G+ +G + ++ + G+SG L P+ A + +L+ L
Sbjct: 292 FRSGQGAVLLTAGLGAGLLFLVANGMLTALGESGALSPLLAVWAAPAIFGALAARTFLAL 351
Query: 359 E 359
E
Sbjct: 352 E 352
>gi|53803847|ref|YP_114531.1| hypothetical protein MCA2101 [Methylococcus capsulatus str. Bath]
gi|53757608|gb|AAU91899.1| putative membrane protein [Methylococcus capsulatus str. Bath]
Length = 356
Score = 176 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 54/364 (14%), Positives = 129/364 (35%), Gaps = 18/364 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY +K + L + L+ + +GE NY + + P
Sbjct: 2 NTLNRYIGWEVIKGAAFAALVLLALLNFFTFADELRDLGE-GNYGLGSIFLYLTLTSPHS 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++IP L+ +VV N+ ELV +A G+S +++ + I++ + +V++
Sbjct: 61 LYELIPSGALIGGLVVLGNMANNHELVAMQAAGVSRGRIVWAVLRAGIVISLISVVISEY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ E+ L ++ W++ N ++ + + D
Sbjct: 121 VIPPAERAAQMLKATATRQQVASQTKYGVWIRDGNVYVNV-----REIENQERLGDIHIF 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG--------RIPIDKNSTTLNIPIKM 234
I + A A KL+ + ++ ++ +++ P +
Sbjct: 176 EISPDGRPALAMHAARASFDRGIWKLEDIGLTRFDPAGNAAIAEHKEQEDWSSVLSPDML 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D F E +++ + + + + + ++ E F+ +V PL+ +AM L+A
Sbjct: 236 DVFIVRPENLSAQDLAKYMAYQTENAQKSLA----VEQAFWGRMVNPLITLAMLLLAIPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + G+ G Y ++ G + + P ++ + ++
Sbjct: 292 VFNARRDVSSGQRIVIGVTIGLGFYLTNRMVSHLGLVYEVNAPLTMVTPPLVVLFAALAA 351
Query: 355 LLQK 358
++
Sbjct: 352 FRRR 355
>gi|90021021|ref|YP_526848.1| SecD export membrane protein [Saccharophagus degradans 2-40]
gi|89950621|gb|ABD80636.1| permease YjgP/YjgQ [Saccharophagus degradans 2-40]
Length = 352
Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats.
Identities = 63/359 (17%), Positives = 129/359 (35%), Gaps = 17/359 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY LL + L + DL + + + +Y+ S + +P
Sbjct: 4 LKRYIGHTIAAAVATVLLVILSLDAISDLVDQLSNLS--GDYTFSEAIIFVLLYIPSSAY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P LV ++ L +SELV+ RA G+S+ QL+ + + VLV +A
Sbjct: 62 DYLPLSALVGCLIGLGVLASSSELVVMRAAGVSVLQLVWAVMRPVCVFIGVGVLVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ K + +++ W + N ++ +LP T
Sbjct: 122 PYSDQYADSRRALAKGHDRALQAERGVWNREGNE----YMHFNAVLPNG-KLYGITRYIF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK------NSTTLNIPIKMDGFQ 238
D+K +++ D AI + + + I+K T P ++
Sbjct: 177 DEKGQLLEASFVDSAIYQGEFWFEQDGEVTSFEDGRIEKFGFATREWRTEVSPDLLNVLV 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+++ + Y+ + + + F+ PL + ++ +IA S L
Sbjct: 237 LDADELPMKRLYDYSTYLD----KQGLDSSEYKLAFWHKAFQPLAVASLVMIAISFILGP 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R V G+ G + T ++ P+ A LIP+++ + L + ++ +
Sbjct: 293 LRQTTMGFRVFIGVIVGLVFQTSQKMLGPASIIMGFSPMFAVLIPIVVCLVLGVFLIRR 351
>gi|329118129|ref|ZP_08246841.1| YjgP/YjgQ family permease [Neisseria bacilliformis ATCC BAA-1200]
gi|327465789|gb|EGF12062.1| YjgP/YjgQ family permease [Neisseria bacilliformis ATCC BAA-1200]
Length = 356
Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 133/360 (36%), Gaps = 18/360 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + +LY + + L D+ + Y+ + A ++P Q+
Sbjct: 6 RYLIRQLSVMSLYAMFALLALYSFFDIV-AEAGGIGEGGYTAGKMAQYVFLQIPDHAYQL 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ +++ L SEL + + G+S LL F++ ++ T L+ A +
Sbjct: 65 MPLAVLIGSLLALSRLAANSELTVIKTSGMSTANLLTVFLIFGLIFATATALLGELAAPA 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ +L K NG W++ +Q+ + +++LP+ + +
Sbjct: 125 ANRYAENLKTTAK-NGKISTGAEGLWIK----EQNSIVNVREMLPD-QTLRGIKAFRHND 178
Query: 187 KNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNSTTLN------IPIKMDGFQK 239
++I AD A + + +L+ V G + +D
Sbjct: 179 AFQLIESWQADAATVAPDGTWRLENVRRSILGGERVRTERHERENWQAGIRSGLLDVLLV 238
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+Q + + I + + + +++ ++ P V M +A + + + +
Sbjct: 239 SPDQMSLAALTAYIAHLEENRQK----TDLYRIEWWRKLMYPAATVVMAFVAFAFTPQSA 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R + + GI G + + + + P AA++P +L + ++ ++ + E
Sbjct: 295 RHGNMGLKLFGGICLGLAFHFAGRLFGFTSRLYGIPPFLAAVLPTLLFAAWAVWLIRRHE 354
>gi|152981500|ref|YP_001354149.1| hypothetical protein mma_2459 [Janthinobacterium sp. Marseille]
gi|151281577|gb|ABR89987.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 382
Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats.
Identities = 55/382 (14%), Positives = 128/382 (33%), Gaps = 28/382 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL +YF ++ L+ L+ + L DL +G Y I + +P
Sbjct: 2 KILQKYFSLEIGRSVLFVLIAFLALFAFFDLVGELKSVGH-GGYKIQHAFLYVVLEMPGY 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +++P L+ I SE I RA +S + + ++ + T +
Sbjct: 61 VYELMPIAALIGTIWALSQFAARSEFTIMRASSMSTAMVGAILLKIGVVFALITFVFGEF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPW----MQISNPQQDI----FIGAKKILPENH 174
+ + + + Q+ W ++ + + ++ F+ +++ P+
Sbjct: 121 VVPITSNMAERIRVNSQGGALSQEFRSGLWTKDVIRSNGQEGEVLGSRFVNVRELRPDG- 179
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPID----------- 222
+ ++ + A A + L +G +
Sbjct: 180 KLMNLKIYEFNRNFHLTSLITAGSADYAGANTWTLNDGTVAAFGESKLQGATTATDITTA 239
Query: 223 -----KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+ +L + + A+ S ++ + +++N R E +
Sbjct: 240 ISTSKFKTQSLVSEMTPEILSVGFTDPATMSAIALVNYTQYLSENN-RDTVRYEIALWKK 298
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
+V P + M +A + RS + + GI G I ++ G P
Sbjct: 299 VVYPFAVFVMMALALPFAYLHFRSGGVSLKIFTGIMIGVSFQLINSLFSHLGLLNTWPPF 358
Query: 338 AAALIPVILTISLSILILLQKE 359
A A++P +L +++++ L+ E
Sbjct: 359 ATAILPSLLFLTVAVGALMWVE 380
>gi|94500484|ref|ZP_01307015.1| hypothetical protein RED65_15478 [Oceanobacter sp. RED65]
gi|94427274|gb|EAT12253.1| hypothetical protein RED65_15478 [Oceanobacter sp. RED65]
Length = 354
Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 128/360 (35%), Gaps = 18/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ Y + + L L +L VI L + + + ++ + P +
Sbjct: 4 IDAYIRSSVINSILAVLFVLGMLDLVIALLNQLDNLRD--TFTFADALYYVVASAPTRLY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++IP ITL+ +V +L SEL RA G+S +++ + S ++ + ++++ I
Sbjct: 62 EMIPMITLIGCLVGLGSLATHSELTAIRAAGVSTGRIMLSTIKASAIMMVLSLVMGEYIV 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKS-DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E++ + W + N ++ I P + T
Sbjct: 122 PDLERMTTSFRTIALGREVAVTNEGKGHWHKEGNN----YMRFAAIEPNG-VLHGMTLYE 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN------IPIKMDGF 237
D+ + A AI + ++ V + + + ++ P +
Sbjct: 177 FDENKNLTKMTHAKRAIYQREHWSMENVRITHIEDVRTEYKAKSIAPFDTELTPETLKFV 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + A + Y+ + + + F+ ++ P+ +A+ L+ S
Sbjct: 237 AQEPKDMAISTLYKYGQYLDAQGLGGG----EFKLAFWKKLLQPISTLALVLVGISFIFG 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + GI G + ++ ++ G + P+ A LIP+ L + +L +
Sbjct: 293 PLRSVTMGQRLFTGILVGLVYKIVVDLLGPIGLLVGIGPLLANLIPIGLCMIWGSWMLRR 352
>gi|298369120|ref|ZP_06980438.1| permease, YjgP/YjgQ family [Neisseria sp. oral taxon 014 str.
F0314]
gi|298283123|gb|EFI24610.1| permease, YjgP/YjgQ family [Neisseria sp. oral taxon 014 str.
F0314]
Length = 356
Score = 175 bits (445), Expect = 8e-42, Method: Composition-based stats.
Identities = 57/357 (15%), Positives = 140/357 (39%), Gaps = 12/357 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + +Y LL + L ++ +G+ +Y+ ++ ++P ++
Sbjct: 6 RYIIRQMSVMAVYALLAFLALYSFFEVINEMGDVGK-GSYTGAKMVQYVLMQMPARAYEL 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ ++ L SEL + +A G+S +LL ++ + TV++ +A
Sbjct: 65 MPLGVLIGGLIALSQLASGSELTVIKASGMSTKRLLAVLSQFGLIFALATVVLGEWVAPD 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ ++ NG WM+ +Q+ I +++LP+ H D
Sbjct: 125 LSRRAENMKASA-INGRISAGASGLWMK----EQNNIINVREMLPD-HTLLGVKIWQHDD 178
Query: 187 KNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKMDGFQKFSE 242
+ ++ +A+ A + + +LK V + ++S + ++
Sbjct: 179 RYQLASAAEAESAALNPDGSWQLKNVSRSVLKGEQVAVSSESSQRWPVALQSGLLDVLLV 238
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S E+ ++ KSN ++ ++ P+ M L+A + + + +R
Sbjct: 239 DPDQMSVSELTTYIAHL-KSNHQKTDTYSVAWWRKLMYPIAAWVMALVAFAFTPQTTRHG 297
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + GI G + + + + + P A ++P ++ L++ ++ ++E
Sbjct: 298 NMGLKLFGGICLGLVFHFAGRLFGFTSQLYSVPPFLAGMLPTVIFALLAVYLIRRQE 354
>gi|223936058|ref|ZP_03627972.1| permease YjgP/YjgQ family protein [bacterium Ellin514]
gi|223895280|gb|EEF61727.1| permease YjgP/YjgQ family protein [bacterium Ellin514]
Length = 372
Score = 175 bits (445), Expect = 9e-42, Method: Composition-based stats.
Identities = 68/371 (18%), Positives = 124/371 (33%), Gaps = 20/371 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + L Y L G +I DL +Q E + VP +
Sbjct: 3 LLDRYLLRELLIPLRYCLGGFLIFWISFDLINSIHQFQE-AKLHLFDVVQYYLITVPSFL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P L+ + N R E+ RA GIS+W++ P+V ++ +
Sbjct: 62 VIVLPMALLLALLYTLSNHARHHEITAIRAAGISLWRICIPYVAVGLVFSAAVFAINEYW 121
Query: 124 ATSGEKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
++ D++ ++K + D D+ I N + + I D
Sbjct: 122 IPDSDQKAQDILDKYKPNRPDGSNKDVYRNFGIPNGRDKRTWDIGSYNLKTEIMTDPKVS 181
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ---------------YGRIPIDKNSTT 227
ID N HR A+ A ND V E++ +
Sbjct: 182 WIDTNNLP-HRLIAERAERTNDVWTFYNVTEFETMPDGFMGPTMKTNVVAHPEFSETPDQ 240
Query: 228 LNIPIKM-DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+ IK + + A +I+ + + + TQ + + P +
Sbjct: 241 IRREIKFSKRLTSHNAKAAEVPIVDILDYLDLHPVLTKKNKWWLYTQLHGRLAAPWTCLV 300
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
+ +A R N + VA I F Y ++ + + G G + A +P +
Sbjct: 301 VVFLAIPFGAASGRRN-IFVGVASSIVIVFAYYVLLKLGLALGTGGYVPAWVAGWLPDFV 359
Query: 347 TISLSILILLQ 357
+ I +LL+
Sbjct: 360 FGAAGIWMLLR 370
>gi|74316600|ref|YP_314340.1| hypothetical protein Tbd_0582 [Thiobacillus denitrificans ATCC
25259]
gi|74056095|gb|AAZ96535.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 356
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 59/358 (16%), Positives = 142/358 (39%), Gaps = 18/358 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY L + + LL ++L D+ + + Y + ++ VP
Sbjct: 2 NLLARYLAGQVLAASGFMLLALLVLFAFFDVVQELGNL--RAGYGFGQATIVVLLNVPGH 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +I+P L+ + L SE + R G+S W++ F V + L + +L+
Sbjct: 60 LYEILPVAALIGTLFALARLVGNSEYAVMRVSGLSNWRVAAYFGVIGVWLALLVLLLGEY 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A ++ + Q+ W++ FI ++++P+N
Sbjct: 120 VAPWSDQAAQRYKLSATRSVVAQQFRSGLWVK----DGSTFINVREVMPDNT-LRGIEIY 174
Query: 183 TIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQY------GRIPIDKNSTTLNIPIKMD 235
D++ ++ + A++A DK +L+ VVE ++ + + ++ P +
Sbjct: 175 GFDQEGRLDWIRAAEIATWRGDKTWQLQTVVETRFSADGIRAQRSANLAWRSVLTPEILS 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
E+ ++R+ + I + + + R E + + P ++ M LIA +
Sbjct: 235 VLLVAPEKMSARALWRYIAHLKANGQK----ASRYELALWSKFISPFVIPIMMLIAMPFA 290
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ R+ + V +GI +G + + + G + +P+++ + +++
Sbjct: 291 IQSPRARGTSVKVFFGILAGLGFHLLSRLFGHLGLLNDWPAFVVSALPLLIFLGIALA 348
>gi|89094619|ref|ZP_01167556.1| hypothetical protein MED92_00300 [Oceanospirillum sp. MED92]
gi|89081089|gb|EAR60324.1| hypothetical protein MED92_00300 [Oceanospirillum sp. MED92]
Length = 362
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 58/369 (15%), Positives = 125/369 (33%), Gaps = 26/369 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY ++ L L LL L + L E + NYS + +P +
Sbjct: 3 LIDRYIARHVLGGFLVVLLVVAGLDMLFALVEELKDVQ--GNYSFAAAVEYVLLTLPRRL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ IP +L+ ++ L +SEL + RA GIS ++ + +L+ + + +
Sbjct: 61 YEFIPLSSLIGCLLGLGILASSSELTVMRAAGISTLGIIISVMKPVLLIIALALGLGEFV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E+ Q G W + F+ ++P+ + T
Sbjct: 121 VPHTEQRAQSHRQVMLTGGGAIHDASRVWHR----DDMTFLHINAVIPDGSV-RGVTRYE 175
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-------------- 229
++ + A++ + K L + E ++ + T +
Sbjct: 176 FNEDLTLKRSSFAEVGRYEDGKWLLTDIQESRFPDAKGREQRATSSIVTTEIEQEIWESG 235
Query: 230 -IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
P + + + ++ ++ + F+ +++PL + A+
Sbjct: 236 LTPDLLKVVMVQPTNLSISGLVQYSNYLTDQGLAS----EQYRIAFWNKLLLPLAIFALV 291
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+A S RS + GI G + I+ P A +IP+++ I
Sbjct: 292 LVAVSFIFGPLRSVTLGQRLITGIIVGLVFKLSQDILGPTSAVFGFYPFVAVMIPILICI 351
Query: 349 SLSILILLQ 357
+ +L +
Sbjct: 352 GVGFWLLNR 360
>gi|113474402|ref|YP_720463.1| permease YjgP/YjgQ [Trichodesmium erythraeum IMS101]
gi|110165450|gb|ABG49990.1| permease YjgP/YjgQ [Trichodesmium erythraeum IMS101]
Length = 392
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 61/377 (16%), Positives = 145/377 (38%), Gaps = 27/377 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
++ RY + L+ + L + V + E+ ++ E IS + ++P
Sbjct: 19 ISVMDRYIIAELIGPFLFGVGLFSSLGITVGAMFELVRKVTE-SGLPISIAIQVFLLKMP 77
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P ++ ++V+ ++ SE+V R+ GISI++++ P ++ S+ + + +
Sbjct: 78 EFIGLAFPMAMILTTLMVYSQMSGHSEIVALRSCGISIYRMIIPTIILSLTVTTLSFALN 137
Query: 121 NPIATSGEKIGIDLIQ---QWKDNGDKQKSDIIPWM---QISNPQQDIFI----GAKKIL 170
I S +++ + ++ K+++ P + + QD + A+K
Sbjct: 138 EIIVPSANYQASLILEKTLEQENPPFKEENIFYPEFGKVKQPDGSQDDTLTRLFYAEKF- 196
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGR-------IPI 221
+ + T + + + ++ A + L Y +
Sbjct: 197 -DGKYMQGVTILDRSQYG-VDQIVSSESATWNSAENIWDLFNGTIYLVSPDGSYRNIVKF 254
Query: 222 DKNSTTLNI-PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
D L+ P+ + G ++ +Q YE ++ M S N + + + + +
Sbjct: 255 DHKKLKLSTAPLDLAGKRRTYKQMNISQSYEYLELMRLSG--NYRKVVKTQVRIQQKLAL 312
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
P + + M L+ A++ + R + F Y + I + G+ IL P A
Sbjct: 313 PFVCLVMGLVGAALGIRPQRKANRGTSFGISVIIIFAYYLLSFITGAMGQKEILTPFLAG 372
Query: 341 LIPVILTISLSILILLQ 357
+P L + +++ +L +
Sbjct: 373 WLPNFLGLGVAVFLLAR 389
>gi|255320990|ref|ZP_05362163.1| permease YjgP/YjgQ family protein [Acinetobacter radioresistens
SK82]
gi|262379920|ref|ZP_06073075.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|255301954|gb|EET81198.1| permease YjgP/YjgQ family protein [Acinetobacter radioresistens
SK82]
gi|262298114|gb|EEY86028.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
Length = 356
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 63/362 (17%), Positives = 135/362 (37%), Gaps = 22/362 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGEL-PNYSISRGAVLAATRVPLIIQ 64
R K+ KTT +LGA +++ ++ L ++G L Y+ + + P I
Sbjct: 5 RIVAKHVTKTTALAMLGATVVLSILQVLFTYLGELGNLKEGYNAWQALLYVLWSAPRYIY 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+I+P L+ ++ L SEL+I RA GIS+W+++ + ++LL I + + +
Sbjct: 65 EILPISALIGAVLGLGTLASNSELIIMRAAGISLWRIVGWVMRSALLLVILSFALSEWVI 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + + W + + FI + + + +
Sbjct: 125 PVTNERAESV--KSHRSVAQLGEVKGYWSR----EGQRFIYIDYANSQGN-LRNVQVVDF 177
Query: 185 DKKNKIIHRKDADLAIIY-NDKVKLKK---VVEYQYGRIPID-KNSTTLNIPIKMDGFQK 239
D+ ++ +AD + + +L+ V + G L + +K
Sbjct: 178 DQDYRLQALLNADSGQFEQDGQWRLQNSVQVDILEAGNAVQHIAEQQPLALALKPKYVHM 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S ++I M + + + + F+ + P L+ + LIA S
Sbjct: 238 VTLDPEDLSPSQLISFMRYMEEYSQVPKT-YQLAFWQKLASPFALITLVLIACSFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL---LPVAAALIPVILTISLSILILL 356
R + +F G Y + G + ++ PV P++L + + LL
Sbjct: 297 RQQSMGFRLVIALFIGLGFYYLQDF---LGYASLVYSPSPVWFVFFPILL-MFIGGSYLL 352
Query: 357 QK 358
+
Sbjct: 353 YR 354
>gi|75907859|ref|YP_322155.1| permease YjgP/YjgQ [Anabaena variabilis ATCC 29413]
gi|75701584|gb|ABA21260.1| permease YjgP/YjgQ [Anabaena variabilis ATCC 29413]
Length = 391
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 61/373 (16%), Positives = 134/373 (35%), Gaps = 20/373 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGELPNYSISRGAVLAATRVP 60
I+ RY L T L+ + + ID + E+ ++ E +S + ++P
Sbjct: 18 FTIMDRYLTSELLPTFLFGVGAFSSIGVTIDAVFELVRRVVE-SGLPVSIAVQVFLLKLP 76
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P TL+ ++ + L+ SEL+ R G+S+++++ V+ S ++ T L
Sbjct: 77 NFIVLAFPMSTLLATLMTYSRLSSESELIALRGCGVSVYRMVMTAVMLSFVVTGLTFLFN 136
Query: 121 NPIATSGEKIG-IDLIQQWKDNGDKQKSDIIPW-----MQISNPQQDIFIGAKKILP--E 172
IA + + L + K + K K I + +Q + ++ + +
Sbjct: 137 EQIAPAANYQATLTLDKALKSDKPKLKQQNIFYPEYRDIQEKDGTKNRILTRLFYADQFD 196
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYG-----RIPIDKNS 225
+ T I + A+ A + Y R +
Sbjct: 197 GKQMKGLTIIDRSTDG-LNQIVVAESAEWNGAQSIWDFYNGTIYLVAPDRSYRNILRFEK 255
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLML 284
L +P + S + + + + +++ R E + +P +
Sbjct: 256 QQLKLPRTPLSLAEQSRDYGEMNIAQALDQLNIERLGGDRQKIRKLEVRIQQKFALPFVC 315
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
V L+ A++ R+ + + F Y + I + G++G+ P A +P
Sbjct: 316 VVFGLVGAAMGTIPQRTGK-GTSFGISVIVIFSYYLLGFITGALGQAGVFSPFIGAWLPN 374
Query: 345 ILTISLSILILLQ 357
+ + + I +L++
Sbjct: 375 FIGLGVGIFLLVR 387
>gi|90416561|ref|ZP_01224492.1| permease YjgP/YjgQ [marine gamma proteobacterium HTCC2207]
gi|90331760|gb|EAS46988.1| permease YjgP/YjgQ [marine gamma proteobacterium HTCC2207]
Length = 356
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 56/365 (15%), Positives = 125/365 (34%), Gaps = 19/365 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L + K LL + L V + + + NY + + T VP
Sbjct: 1 MMHRLSWHVGKTVFAAIAVTLLVLVGLDSVGAIIDQSADVTR--NYFFADAMIYVVTLVP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I + IPF +L+ +V L SE+++ RA G+S +++ + ++ I + +
Sbjct: 59 SRIYEYIPFASLIGCLVGLGLLAGNSEVIVMRAAGVSPLRIVGFVLKPVLIFIILGMTIG 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +++ + + Q S W N + + F+ A + P + T
Sbjct: 119 EYFSPYLDQLAEGKREYLRKGESAQDSSSGLW----NREGNQFVHANAVFPGG-VLYGVT 173
Query: 181 SITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPIDKNSTTLN------IPI 232
+ + +I A A + V ++ +++ P
Sbjct: 174 RYQFNDERQIQEASFASRATFNSTERYWIEENVSVTRFLGDSTERDKLITRRWDSELTPN 233
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ ++ + S Y I + N E + + PL+++ + L+
Sbjct: 234 VLMLNILPADSLSIESLYSYIAFLELQN----IDTASYEVALWRKALQPLIIIGLVLLGI 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S R + + G+ G ++ P+ A L+P++ + + +
Sbjct: 290 SFVFGPLRDSTMGFRIFIGVVFGISFRIFQDMLGPLSVVFQFPPLLAVLVPILFCVLVGV 349
Query: 353 LILLQ 357
+L +
Sbjct: 350 FLLRR 354
>gi|149378263|ref|ZP_01895975.1| predicted Permease [Marinobacter algicola DG893]
gi|149357460|gb|EDM45970.1| predicted Permease [Marinobacter algicola DG893]
Length = 353
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 53/359 (14%), Positives = 122/359 (33%), Gaps = 17/359 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY +L + L + + +Y + + +P I
Sbjct: 4 IDRYVMSTVGGAMFLVMLVVLSLDLIFAFIAELDDAEN--DYQTLQALLYVVMTLPRRIY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + +V + +SEL + RA G+S+ +++ + ++++ + VL+ +A
Sbjct: 62 DYLPLGAFMGCLVGLGTMASSSELTVIRAAGVSLKRIVWSAMKPTLVVVVLGVLIGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E++ + G+ S W + + D+F+ + P + +
Sbjct: 122 PPAERMAQSQKTVAQGAGESIASASGIWHR----EGDVFMHLNAVQPNG-VLHGVSLFRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS------TTLNIPIKMDGFQ 238
D + ++ A+ I D L+ V + + + T P +
Sbjct: 177 DDERWLVSASFAERGIYQGDHWLLENVATTRLSDEKTTQETHRALRWETGLSPSVLSVLI 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
E A Y + + F+ +++PL M L+A S
Sbjct: 237 VKPEDLAISGLYTYASYLGEQG----LNAANYWLAFWKKVLMPLGTAVMVLVAISFVFGP 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V G+ G + + ++ PV A ++P+ + + +++ +
Sbjct: 293 LRSVTMGFRVFTGLIVGLLFKYMQDLLGPMSLVFGFNPVLAIILPIAINAVVGAVLMKR 351
>gi|260551089|ref|ZP_05825293.1| permease YjgP/YjgQ family protein [Acinetobacter sp. RUH2624]
gi|260405856|gb|EEW99344.1| permease YjgP/YjgQ family protein [Acinetobacter sp. RUH2624]
Length = 356
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 61/361 (16%), Positives = 139/361 (38%), Gaps = 21/361 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGEL-PNYSISRGAVLAATRVPLIIQ 64
R KY KTT + G I++ V+ L ++GEL P+Y+ + + P +
Sbjct: 5 RIVAKYVTKTTALAMFGTTIVLSVLQVLFTYLGELGELKPDYNAWQAFIYVLWGAPRYLY 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+I+P L+ ++ L SEL++ R++GIS+W+++ + ++LL + + + +
Sbjct: 65 EILPISALIGAVIGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFALSEWVV 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + W + + FI + + D +
Sbjct: 125 PYTNEKAQSI--KSHRSVAALGEVKGYWSR----EGQRFIYIDYANSQGN-LRDIQVVDF 177
Query: 185 DKKNKIIHRKDADLAI-IYNDKVKLKKVVEYQY----GRIPIDKNSTTLNIPIKMDGFQK 239
DK+ + +A+ I + + L+K + I + + +L + ++
Sbjct: 178 DKEYHLQSVINAEQGKFIKDGQWSLQKASQTDILTDGNSILNNHDQQSLGLALQPKYVHM 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S ++I M + ++ + + F+ + P L+ + L+A S
Sbjct: 238 VTLDPEDLSPSQLISFMRYMDEYSQVPKT-YQLAFWQKVASPFSLITLVLVACSFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL---IPVILTISLSILILL 356
R + +F G Y + G + ++ + A +P+IL +L
Sbjct: 297 RQQSMGFRLVIALFIGLGFYYLQDF---LGYASLVYAPSPAWFVLVPIILMFGAGSYLLY 353
Query: 357 Q 357
+
Sbjct: 354 R 354
>gi|83644757|ref|YP_433192.1| permease [Hahella chejuensis KCTC 2396]
gi|83632800|gb|ABC28767.1| predicted Permease [Hahella chejuensis KCTC 2396]
Length = 353
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 57/359 (15%), Positives = 122/359 (33%), Gaps = 17/359 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY L LL + L V +++ +Y + VP I
Sbjct: 4 IDRYIVATVASAMLLVLLVVLSLDLVFAFIAEMDELKN--DYQTLQAMKYIIFTVPRRIY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + +V L SEL + RA G+S+ +++ + ++ + + +LV +A
Sbjct: 62 DYLPLAAFIGCLVGLGVLANNSELTVIRAAGVSVVRVVWSTMKPALAVVVVGILVGEFVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+I + + S W + + ++F+ + P+ + +
Sbjct: 122 PQTERIAQTQKALEQGAAENVASSAGMWRR----EGNVFMHFNAVEPKG-VLHGVSLFEF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-GRIPIDKNSTTLNI-----PIKMDGFQ 238
+ + +++ A AI D L+ + + + +L P ++
Sbjct: 177 NDERRMVRSTFAKRAIYQGDHWLLQDIERTEIKDDGSHVQTFDSLRWNVSLSPSILEVLI 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
E + + Y F+ ++ P+ + L+A S
Sbjct: 237 IKPEYLSIKGLYTYANYQEEQG----LDANSYLMAFWKKVLQPVATSVLVLVAISFIFGP 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V GI G + + ++ PV A L P+ + L +++L +
Sbjct: 293 LRSVTMGFRVFCGIIIGLLFKYMQDLLGPASLVFGFNPVIATLAPICICALLGVVLLRR 351
>gi|86608831|ref|YP_477593.1| YjgP/YjgQ family protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557373|gb|ABD02330.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 370
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 65/365 (17%), Positives = 144/365 (39%), Gaps = 14/365 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY F L L + G +L+ V L + ++ E + L +P
Sbjct: 8 FWLLERYLFGEMLTPVLAGVAGGTLLLLVGRLFTLAERLVE-GSVPPLTVLRLLVLDLPE 66
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P ++ L+ SE+ RA GI ++ P ++ + + + + N
Sbjct: 67 MVVLGMPIAAFFATMLTLGKLSGNSEITAMRAAGIPFSRIFRPLLLVGLAMSLSAFFISN 126
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++ + QQ + + + +++ +++ P + +D T
Sbjct: 127 VLLPASKQQIRQIDQQALLAQATTPVQYDVFFKTED---NLWFFIRQVDPRLNTMQDVTI 183
Query: 182 ITIDK----KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT-----LNIPI 232
+ +D K +++ A A+ + L + + YG + T L +
Sbjct: 184 LRVDPLPGGKYQLVEVTLAAQAVWNGLEWSLSEGATHLYGPTGLSIAEQTFHRKPLQVSQ 243
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + + S E+ +++S +SN+ + T+F+ +PL LI+
Sbjct: 244 DLAALMQPPVPPSELSLPELAERISRLARSNL-NTQALRTEFHMRFSLPLASFFAVLISL 302
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ +R V +GI F Y ++++ +S G+ G L P AAA IL + +
Sbjct: 303 PLGSTTARRVGRYGGVVFGILLVFGYYVVLSVSRSLGEVGALPPWAAAWSFNILFGGIGL 362
Query: 353 LILLQ 357
++L +
Sbjct: 363 VLLAR 367
>gi|239809483|gb|ACS26209.1| unknown [uncultured bacterium]
Length = 291
Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats.
Identities = 55/299 (18%), Positives = 112/299 (37%), Gaps = 17/299 (5%)
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P L+ ++ L +SEL I RA G+S+ +++ + ++L I +L+ +A
Sbjct: 1 MLPMAALIGCLIGLGTLASSSELTIMRAAGVSLGRIVVAVMKPMLVLLIAGILIGEYVAP 60
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ E I + G+ Q S W + N F+ + P + T D
Sbjct: 61 ATEDIAQARRSLAQGAGEAQSSKRGLWHRQENE----FVHVNAVQPGG-MLVGVTRYRFD 115
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNSTTLNIPIKMDGFQ 238
+ +++ A A D L+ + + R P ++ L P +
Sbjct: 116 DERRLLSSSFARRASYQADHWLLENISTTHFRGDHTEVVRTPQERWDVQL-TPQLLGTVV 174
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
E + + I + +N R F+ ++ P + VA+ L+A S
Sbjct: 175 MEPEALSITGLWRYIHYLGEQGLNNG----RYWLAFWTKVLQPAVTVALVLLAISFIFGP 230
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + G+ GF+ I ++ + P+ A ++P + + +L +
Sbjct: 231 LRSVTLGQRIFTGVVVGFVFRIIQDLLGPASQVFGFSPLLAVVLPAGICALIGAWLLRR 289
>gi|94311741|ref|YP_584951.1| permease YjgP/YjgQ [Cupriavidus metallidurans CH34]
gi|93355593|gb|ABF09682.1| predicted permease [Cupriavidus metallidurans CH34]
Length = 387
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 63/380 (16%), Positives = 129/380 (33%), Gaps = 38/380 (10%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYF + + L + L D+ + Y+ P I ++
Sbjct: 9 RYFARLIYGVFAFILFAVLALFVFFDMLSELESVQ--GKYTSLIAFFHVMLEAPTRIYEV 66
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I VF L SE I R G++ Q L ++ L + T + I +
Sbjct: 67 LPIAVLISAIYVFSQLASQSEYTIFRVAGLNTRQALFSLFKLAVPLALATFIFGEFIGPA 126
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISN--------PQQDIFIGAKKILPENHIWED 178
E+ + + W++ + + F+ + + P+ I
Sbjct: 127 AEQYAQKIKLEAIGATVSSGFRSGVWVKDRDREPEEKGAGEITRFVNVQGLRPDQSI-TG 185
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQY-----GRIPIDKNSTTLN--- 229
T DK ++ + A + +L V E ++ G+ ++++ +
Sbjct: 186 VTIYEFDKDYRLRVIRVAKEGKYQGGQSWQLNDVNETRFIELRDGQPAANRDALAPDFRG 245
Query: 230 --------------IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY 275
P + E ++ + + I+ + + + R E F+
Sbjct: 246 EQVQFPNILMHSELTPQILSVLLVQPENMSTVNLFRYIRHLRDNKQ----DTQRYEIAFW 301
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+V PL L M +A + +R+ + V GI G + T+ G
Sbjct: 302 KKVVYPLTLFVMVALALPFAYLHARAGAVGVKVFGGIMLGLSFHLSNTLFSHVGLLHTWP 361
Query: 336 PVAAALIPVILTISLSILIL 355
P+ +AL+P L + +++ L
Sbjct: 362 PIVSALVPGTLYLMIALGAL 381
>gi|311103830|ref|YP_003976683.1| hypothetical protein AXYL_00610 [Achromobacter xylosoxidans A8]
gi|310758519|gb|ADP13968.1| hypothetical protein AXYL_00610 [Achromobacter xylosoxidans A8]
Length = 392
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 62/370 (16%), Positives = 125/370 (33%), Gaps = 20/370 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + ++ L+ + L L + + +G+ +S+ + A +P + +
Sbjct: 6 RYLAREIYRSCAVVLMALLGLFTFFALVDDLDNVGDK--FSMMALLYMQALAIPTRLYDL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I+ L + +ELVI R G+S +LL + +I L I L+ +
Sbjct: 64 LPIGLLIGAILALAGLAQRNELVILRVSGVSGMKLLRMLWIVTIPLMIGAGLLSEYVTPW 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E + ++ + + W + I L + T K
Sbjct: 124 AEIKSGEANLLFRGKAGGDRLNSGYWFKEPTADGGTRIINIGELKGDGQVSAVTLYEFKK 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYG----------RIPIDKNSTTLNIP----- 231
+ A + + LK V E + R P +T + +P
Sbjct: 184 DQTLSALSTAPTGLFTQGDLLLKDVTETRLDDEAAEALANARPPKHPPATVVKLPERNID 243
Query: 232 --IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ + S ++ + + + + + R + + P L+ M
Sbjct: 244 TTLSAERLLARVLTPERMSIATLLDYVDYLRNNQLQYG-RQVVALWRKLAYPFTLLVMIT 302
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
IAA + L +R V GI G + + + + G G AL P I +
Sbjct: 303 IAAPIGLMQTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLGKWPAWLTALGPNIGAMI 362
Query: 350 LSILILLQKE 359
+++ + E
Sbjct: 363 VALGAMGYME 372
>gi|303258295|ref|ZP_07344302.1| permease YjgP/YjgQ [Burkholderiales bacterium 1_1_47]
gi|302859048|gb|EFL82132.1| permease YjgP/YjgQ [Burkholderiales bacterium 1_1_47]
Length = 378
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 67/381 (17%), Positives = 145/381 (38%), Gaps = 31/381 (8%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ R F +K++L+ LL + L DL +G +YS+ + +L A +P
Sbjct: 2 KIVSRMIFAQIMKSSLFVLLTLVALFAFFDLIGQSGNIGT--SYSMGQAFLLTALILPTR 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P ++ +I L TS+ + R GI W+ ++ I+L I L+ N
Sbjct: 60 CYEVLPIAVMLGSIFTLSRLASTSQFTVLRVSGIGPWRFCGMLLMPGIVLVICAYLLGNL 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKS-DIIPWMQ--ISNPQQD----IFIGAKKILPENHI 175
+A +++ + + K D W++ N + F+ +++ P
Sbjct: 120 VAPPAQRLAKEFKLDISGSAFTGKELDSGIWVRDVQRNEAGEPKKISFVNVQRLRP-GEA 178
Query: 176 WEDFTSITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDKNSTT------- 227
D+ D+ + + A + L VVE +P + T
Sbjct: 179 AYDWVVYVFDRPDHLTSIVTAKSGTYSEQEGWVLHDVVEETVPTLPKESREQTQARVERK 238
Query: 228 ----LNIPIKMDG-----FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+ +DG E + + + I+ + + ++ R +T F+
Sbjct: 239 VMKSMVWGKSLDGNIFGLLMIKPEDMSLQELHYYIEYLKENGQTY----KRFDTAFWSKA 294
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
PL ++ M L++ + + +R+ I + GI G Y + + + +
Sbjct: 295 FYPLAILVMLLLSMPFAYQNARAGGMAIKIFCGIMIGIFYYALNNLFAFMSALDSVPSII 354
Query: 339 AALIPVILTISLSILILLQKE 359
+A++P ++ +I+ + E
Sbjct: 355 SAILPSVMMTLAAIIAMWYVE 375
>gi|119486322|ref|ZP_01620381.1| hypothetical protein L8106_16749 [Lyngbya sp. PCC 8106]
gi|119456535|gb|EAW37665.1| hypothetical protein L8106_16749 [Lyngbya sp. PCC 8106]
Length = 392
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 55/374 (14%), Positives = 136/374 (36%), Gaps = 25/374 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLN-EIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY + L+ + + ID ++ ++ E + + ++P
Sbjct: 21 ILDRYIISELIAPFLFGVGLFTSVALSIDTVFDLVRKVAE-SGLDVGIAMQIFLLKMPEF 79
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P ++ ++V+ ++ SE+V R+ GISI++L+ P ++ S+ + +
Sbjct: 80 VVLSFPMSMVLTTLIVYGRMSSDSEIVALRSCGISIYRLVIPTLIFSLFITASMFVFNEL 139
Query: 123 IATSGEKIGIDLIQQWKDNG---DKQKSDIIPWMQ---ISNPQQDIFIGAKKILP---EN 173
I + ++Q ++++ P + I + ++I I + +
Sbjct: 140 IVPATNYRASITLEQALHQDRLPVQEENIFYPEYRTIPIEDSDEEITILVRLFYAQEFDG 199
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGR--------IPIDK 223
+ T + ++ I ++ A+ + Y K
Sbjct: 200 KYMNEVTILDKSQQG-ITQIISSESAVWNGKQQSWDFFDGTVYMIDPKGSYRNIIRFDHK 258
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+P+ + ++ ++ +E ++ M S I + + +P +
Sbjct: 259 ELKLPRVPLDLASRKRRYDEMNIVQAHEYLELMKSSGNEKIVQKTK--VRIQQKYSLPFV 316
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
V L+ A++ + R+N+ I F Y + I + G+ I+ P A +P
Sbjct: 317 CVVFGLLGAALGSQHQRTNRS-TSFGISIVIIFSYYMLAFITGAMGQKAIISPFLAGWLP 375
Query: 344 VILTISLSILILLQ 357
+++ + S L +
Sbjct: 376 IVIGLGASGFFLYK 389
>gi|242279363|ref|YP_002991492.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
2638]
gi|242122257|gb|ACS79953.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
2638]
Length = 376
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 72/358 (20%), Positives = 142/358 (39%), Gaps = 13/358 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+PG L Y K + L + + DL + + E + ++P
Sbjct: 6 LPGYLASYVLKQNIFLMCVCLGVGTGIYLLSDLFDRLDDFIE-AGLGMGTILKYFLVKMP 64
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI QI+P + L+ IV + R+ EL+ R G+S+ L FV+ +++ +L
Sbjct: 65 LIFSQILPAVFLISMIVQLCVMARSKELLALRTGGLSLIWFLRFFVIYAVIWSFGQLLFS 124
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I GE+ + WK++ K D I + + AK+++P + +D T
Sbjct: 125 QVIGVYGEQEAYRI---WKEDVRKSMLDKRVLKNIWLKEGRFVVEAKEVMPFGNRAKDIT 181
Query: 181 SITIDK-KNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNS-TTLNIPIKMDGF 237
+ I ++ A + + KL+ VE + K+ T+ I + ++ F
Sbjct: 182 VYEFAEGNGGIKRVITSESAEVSSKYGWKLENAVELSPDKFASQKHPIFTMPIKLNLNVF 241
Query: 238 QKFSE--QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ A +++ + + S R T ++ L+ M L++ ++
Sbjct: 242 KVVDPDIDPAQLPLWQLDQVIEQLKLSGS-SVDRLITAWHSKWAYAFSLLTMALVSLAL- 299
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + + + G+ F Y + + S G +G L P+ AA + IL SL++
Sbjct: 300 --VTITENIYLNIGLGLAIIFTYYALFMVGASAGDTGALPPIVAAWLGNILVSSLALG 355
>gi|331001131|ref|ZP_08324762.1| permease, YjgP/YjgQ family [Parasutterella excrementihominis YIT
11859]
gi|329569436|gb|EGG51214.1| permease, YjgP/YjgQ family [Parasutterella excrementihominis YIT
11859]
Length = 378
Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 67/381 (17%), Positives = 145/381 (38%), Gaps = 31/381 (8%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ R F +K++L+ LL + L DL +G +YS+ + +L A +P
Sbjct: 2 KIVSRMIFAQIMKSSLFVLLTLVALFAFFDLIGQSGNIGT--SYSMGQAFLLTALILPTR 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P ++ +I L TS+ + R GI W+ ++ I+L I L+ N
Sbjct: 60 CYEVLPIAVMLGSIFTLSRLASTSQFTVLRVSGIGPWRFCGMLLMPGIVLVICAYLLGNL 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKS-DIIPWMQ--ISNPQQD----IFIGAKKILPENHI 175
+A +++ + + K D W++ N + F+ +++ P
Sbjct: 120 VAPPAQRLAKEFKLDISGSAFTGKELDSGIWVRDVQRNEAGEPKKISFVNVQRLRP-GEA 178
Query: 176 WEDFTSITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDKNSTT------- 227
D+ D+ + + A + L VVE +P + T
Sbjct: 179 AYDWVIYVFDRPDHLTSIVTAKSGTYSEQEGWVLHDVVEETVPTLPKESREQTQARVERK 238
Query: 228 ----LNIPIKMDG-----FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+ +DG E + + + I+ + + ++ R +T F+
Sbjct: 239 VMKSMVWGKSLDGNIFGLLMIKPEDMSLQELHYYIEYLKENGQTY----KRFDTAFWSKA 294
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
PL ++ M L++ + + +R+ I + GI G Y + + + +
Sbjct: 295 FYPLAILVMLLLSMPFAYQNARAGGMAIKIFCGIMIGIFYYALNNLFAFMSALDSVPSII 354
Query: 339 AALIPVILTISLSILILLQKE 359
+A++P ++ +I+ + E
Sbjct: 355 SAILPSVMMTLAAIIAMWYVE 375
>gi|261855830|ref|YP_003263113.1| permease YjgP/YjgQ family protein [Halothiobacillus neapolitanus
c2]
gi|261836299|gb|ACX96066.1| permease YjgP/YjgQ family protein [Halothiobacillus neapolitanus
c2]
Length = 376
Score = 173 bits (438), Expect = 4e-41, Method: Composition-based stats.
Identities = 57/371 (15%), Positives = 126/371 (33%), Gaps = 26/371 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G L RY + + L +L+ V + ++ +YS P
Sbjct: 2 GTLDRYLIRAIVVGGLASTAAFALLIVVFGAIDELPKV--NASYSAIDALSFVLMTTPGY 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P LV ++ NL SEL + R G+S+++L P +VG+ +L + +L+
Sbjct: 60 LYDFYPAAVLVGGLLSLGNLAAHSELTVMRCSGMSMFRLARPVLVGATILALIGMLMGET 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I G++ ++ + + +G W++ FI + +
Sbjct: 120 IGAWGQEKANEMRAEAQGSGVSMNLKSGLWLR----DGQRFINVGQAIVGG-RLNRVRVF 174
Query: 183 TIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNSTTLNIPIK-------- 233
T++ +++ + A AI +L V E + +P++
Sbjct: 175 TVNAQSQPVQLLSASYAISEGGDLWRLYDVKESTLDTKVPGNSVKVRFVPVQEHVRLFSQ 234
Query: 234 --MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
++ + + + + N + + + P+ ++ M +A
Sbjct: 235 KILNIAVLNPRHMNILQLHSYVDYL----RKNQLDASAYSSALWARVFAPVSVLVMLFVA 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL----LPVAAALIPVILT 347
RS + I G + T++ I+ +F + +P +A +P L
Sbjct: 291 LPFVFAPQRSGGAGRWLFIAIVLGVVYLTLVQIVSAFAPVYGVGHPFIPFMSAAVPPALF 350
Query: 348 ISLSILILLQK 358
L + +
Sbjct: 351 AMLGVYAFRRL 361
>gi|169634641|ref|YP_001708377.1| hypothetical protein ABSDF3306 [Acinetobacter baumannii SDF]
gi|169153433|emb|CAP02575.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter baumannii]
Length = 356
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 59/361 (16%), Positives = 139/361 (38%), Gaps = 21/361 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEI-QNQMGEL-PNYSISRGAVLAATRVPLIIQ 64
R KY KTT + G I++ V+ + ++GEL P+Y+ + + P +
Sbjct: 5 RIVAKYVTKTTALAMFGTTIVLSVLQILFTYLGELGELKPDYNAWQAFIYVLWGAPRYLY 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+I+P L+ ++ L SEL++ R++GIS+W+++ + ++LL + + + +
Sbjct: 65 EILPISALIGAVIGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFALSEWVV 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + W + + FI + + D +
Sbjct: 125 PYTNEKAQSV--KSHRSVAALGEVKGYWSR----EGQRFIYIDYANSQGN-LRDIQVVDF 177
Query: 185 DKKNKIIHRKDADLAI-IYNDKVKLKKV----VEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+K + +A+ I + + L+K + I + + +L + ++
Sbjct: 178 NKDYHLQSLINAEQGKFIQDGQWTLQKASQMDILTDGNSILNNHDQQSLGLALQPKYVHM 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S ++I M + ++ + + F+ + P L+ + L+A S
Sbjct: 238 VTLDPEDLSPSQLISFMRYMDEYSQVPKT-YQLAFWQKVASPFSLITLVLVACSFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL---IPVILTISLSILILL 356
R + + +F G Y + G + ++ + A +P+IL +L
Sbjct: 297 RQHSMGFRLVIALFIGLGFYYLQDF---LGYASLVYAPSPAWFVLMPIILMFGAGSYLLY 353
Query: 357 Q 357
+
Sbjct: 354 R 354
>gi|299771879|ref|YP_003733905.1| hypothetical protein AOLE_18250 [Acinetobacter sp. DR1]
gi|298701967|gb|ADI92532.1| hypothetical protein AOLE_18250 [Acinetobacter sp. DR1]
Length = 356
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 59/361 (16%), Positives = 140/361 (38%), Gaps = 21/361 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEI-QNQMGEL-PNYSISRGAVLAATRVPLIIQ 64
R KY KTT + G +++ ++ + ++GEL P+Y+ + + P +
Sbjct: 5 RIVAKYVTKTTALAMFGTTVVLSILQILFTYLGELGELKPDYNAWQALIYVLWGAPRYLY 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+I+P L+ ++ +L +SEL++ R+ GIS+W+++ + ++LL I + + +
Sbjct: 65 EILPISALIGAVIGLGSLATSSELIVMRSAGISLWRIVGWVMRSALLLIILSFALSEWVI 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + W + + FI + + +D +
Sbjct: 125 PYTNEKAASV--KSHRSVAALGEVKGYWSR----EGQRFIYIDYANSQGN-LKDIQVVDF 177
Query: 185 DKKNKIIHRKDADLAII-YNDKVKLKKVVEYQY----GRIPIDKNSTTLNIPIKMDGFQK 239
D+ + +A + + LKK + I D + +L++ ++
Sbjct: 178 DQNYYLQSLINAQQGQFVKDGQWALKKAQQMDILAAGNAIKTDHDEQSLSLALQPKYVHM 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S ++I M + ++ + + F+ + P L+A+ L+A S
Sbjct: 238 VTLDPEDLSPSQLISFMRYMDEYSQVPKT-YQLAFWQKVASPFSLIALVLVACSFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL---IPVILTISLSILILL 356
R + +F G Y + G + ++ + A +P++L +L
Sbjct: 297 RQQSMGFRLVIALFIGLSFYYLQDF---LGYASLVYAPSPAWFVLVPILLMFGAGSYLLY 353
Query: 357 Q 357
+
Sbjct: 354 R 354
>gi|169797502|ref|YP_001715295.1| hypothetical protein ABAYE3538 [Acinetobacter baumannii AYE]
gi|184156574|ref|YP_001844913.1| permease [Acinetobacter baumannii ACICU]
gi|213155684|ref|YP_002317729.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB0057]
gi|215484938|ref|YP_002327177.1| hypothetical protein ABBFA_003301 [Acinetobacter baumannii
AB307-0294]
gi|239502070|ref|ZP_04661380.1| hypothetical protein AbauAB_07127 [Acinetobacter baumannii AB900]
gi|260556394|ref|ZP_05828613.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii ATCC
19606]
gi|301346543|ref|ZP_07227284.1| hypothetical protein AbauAB0_09866 [Acinetobacter baumannii AB056]
gi|301512955|ref|ZP_07238192.1| hypothetical protein AbauAB05_15269 [Acinetobacter baumannii AB058]
gi|301594833|ref|ZP_07239841.1| hypothetical protein AbauAB059_03452 [Acinetobacter baumannii
AB059]
gi|332851502|ref|ZP_08433499.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013150]
gi|332866798|ref|ZP_08437202.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013113]
gi|332874942|ref|ZP_08442793.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6014059]
gi|169150429|emb|CAM88326.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter baumannii AYE]
gi|183208168|gb|ACC55566.1| predicted permease [Acinetobacter baumannii ACICU]
gi|193076100|gb|ABO10704.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
gi|213054844|gb|ACJ39746.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB0057]
gi|213988459|gb|ACJ58758.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294]
gi|260410449|gb|EEX03748.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii ATCC
19606]
gi|322506461|gb|ADX01915.1| permease [Acinetobacter baumannii 1656-2]
gi|323516340|gb|ADX90721.1| permease [Acinetobacter baumannii TCDC-AB0715]
gi|332729955|gb|EGJ61286.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013150]
gi|332734406|gb|EGJ65526.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013113]
gi|332736885|gb|EGJ67861.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6014059]
Length = 356
Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats.
Identities = 59/361 (16%), Positives = 138/361 (38%), Gaps = 21/361 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEI-QNQMGEL-PNYSISRGAVLAATRVPLIIQ 64
R KY KTT + G I++ V+ + ++GEL P+Y+ + + P +
Sbjct: 5 RIVAKYVTKTTALAMFGTTIVLSVLQILFTYLGELGELKPDYNAWQAFIYVLWGAPRYLY 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+I+P L+ ++ L SEL++ R++GIS+W+++ + ++LL + + + +
Sbjct: 65 EILPISALIGAVIGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFALSEWVV 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + W + + FI + + D +
Sbjct: 125 PYTNEKAQSV--KSHRSVAALGEVKGYWSR----EGQRFIYIDYANSQGN-LRDIQVVDF 177
Query: 185 DKKNKIIHRKDADLAI-IYNDKVKLKKV----VEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+K + +A+ I + + L+K + I + + +L + ++
Sbjct: 178 NKDYHLQSLINAEQGKFIQDGQWTLQKASQMDILTDGNSILNNHDQQSLGLALQPKYVHM 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S ++I M + ++ + + F+ + P L+ + L+A S
Sbjct: 238 VTLDPEDLSPSQLISFMRYMDEYSQVPKT-YQLAFWQKVASPFSLITLVLVACSFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL---IPVILTISLSILILL 356
R + +F G Y + G + ++ + A +P+IL +L
Sbjct: 297 RQQSMGFRLVIALFIGLGFYYLQDF---LGYASLVYAPSPAWFVLMPIILMFGAGSYLLY 353
Query: 357 Q 357
+
Sbjct: 354 R 354
>gi|255613816|ref|XP_002539536.1| Inner membrane protein yjgQ, putative [Ricinus communis]
gi|223505146|gb|EEF22847.1| Inner membrane protein yjgQ, putative [Ricinus communis]
Length = 283
Score = 172 bits (437), Expect = 7e-41, Method: Composition-based stats.
Identities = 50/290 (17%), Positives = 111/290 (38%), Gaps = 21/290 (7%)
Query: 82 LNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN 141
+ +SEL++ R GIS+ + + ++ + T L+ IA EK+ + Q D+
Sbjct: 1 MASSSELIVMRTSGISLQTIAKMLLSIGLVFALVTFLIGEIIAPISEKMAQRIRIQATDS 60
Query: 142 GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII 201
Q W++ F+ ++P+ D D + ++ + AD
Sbjct: 61 VVAQDFQSGLWIK----DGSSFVNVATVMPD-TSLVDIRIYDFDAQFRLRNISHADKGYF 115
Query: 202 YNDKVKLKKVVEYQYGRIPIDKNST------------TLNIPIKMDGFQKFSEQFASRSF 249
+D L V + + +N++ +L P ++ E+ ++ +
Sbjct: 116 EDDHWILSNVTQTKMHTSKSAQNNSVTSQFFKQTKWESLIRPELLNVLLVLPEKMSAWNL 175
Query: 250 YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVA 309
Y I+ + + + + R + + +V PL + M ++A R+ +
Sbjct: 176 YSFIQYLHQNGQRS----TRYQVALWSKLVYPLACLVMVMLALPFGFLQQRAGGISAKIF 231
Query: 310 YGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
GIF G + + + G P+ +A+ P +L ++ + +L E
Sbjct: 232 AGIFLGVVYQIMNRVFVHLGVLNDWSPLVSAISPTLLFLAAGLGMLYYVE 281
>gi|319944263|ref|ZP_08018539.1| permease YjgP/YjgQ family protein [Lautropia mirabilis ATCC 51599]
gi|319742558|gb|EFV94969.1| permease YjgP/YjgQ family protein [Lautropia mirabilis ATCC 51599]
Length = 382
Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats.
Identities = 62/379 (16%), Positives = 128/379 (33%), Gaps = 34/379 (8%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + + LLG + L DL + +G+ Y + + + +P I ++
Sbjct: 6 RYLTREIAGGIMAVLLGFLGLFAFFDLINELDDIGQ-GGYRLPQAVLYVLLGLPSHIYEL 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I + SE RA G+S L +V +LL + T + IA
Sbjct: 65 MPVAALIGCIYALAQFAQNSEFTAMRAAGMSRQLALRGVLVLGVLLAVLTAVAGEWIAPM 124
Query: 127 GEKIGIDLIQQWKDNGDKQKS-DIIPWMQIS--NPQQDI----FIGAKKILPENHIWEDF 179
E+ L G + W++ S P F+ + +
Sbjct: 125 AEQRAQQLRMDVLGKGSGVGAFRSGLWLKDSVRGPDGQRLQTRFVNIGTLEADGG-LSKV 183
Query: 180 TSITIDKKNKIIHRKDADLAIIYN------DKVKLKKVVEYQYGRIPIDKNSTTLNI--- 230
D ++ A+ +L+ V ++ L+
Sbjct: 184 AIHEFDTDFRLTAVIHAEHGRYQPAHNGQASSWRLEGVETTRFNVSRTQTGYDALHAAVE 243
Query: 231 ------------PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
P + ++ ++ + + + + + + R E + +
Sbjct: 244 RRPETVWVSDLNPALLSVLAIAPDRMSALALWRYTSHLKENAQ----NANRYELALWKKV 299
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
V PL ++ M ++A R+ + + +GI G Y + + + G P
Sbjct: 300 VYPLAIIVMLMLALPFGYLQVRAGGIGLKLFFGISLGVGFYIMNGLFSNLGLINTWPPWL 359
Query: 339 AALIPVILTISLSILILLQ 357
A IP IL ++L++++L +
Sbjct: 360 AVSIPSILFLALALVMLNR 378
>gi|264678997|ref|YP_003278904.1| permease YjgP/YjgQ [Comamonas testosteroni CNB-2]
gi|262209510|gb|ACY33608.1| permease YjgP/YjgQ [Comamonas testosteroni CNB-2]
Length = 367
Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats.
Identities = 65/367 (17%), Positives = 140/367 (38%), Gaps = 24/367 (6%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMG-ELPNYSISRGAVLAATRVPLIIQQII 67
++ ++ LY L + L F DL + +G Y+ +R + A +P + +++
Sbjct: 8 IYREVIQAVLYVSLAFLALFFFFDLVDEMRWVGSGNAGYTATRALLFVALSIPGHLYELM 67
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P L+ I V ++SE I R G+ W L ++ + + TVLV + IA +
Sbjct: 68 PIAVLIGAIFVMAKFAQSSEFTIMRTSGMGPWLALRTLLILGMSFVLLTVLVGDYIAPAA 127
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ L G + W++ + I + + D K
Sbjct: 128 DNFSQKLRVV--SKGQISRGATGAWLKEKQGDHSVAINVGAVKSPGDFV-NVRIFEFDSK 184
Query: 188 NKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDK-----NSTTLNIPIKMDGFQKF 240
+I + +A A + D + L+ V + + + ++N P K+
Sbjct: 185 GRIAAQINAQSAQVDEDREQWTLQGVQGSKVAQDGDVTKLSPISEASMNWPTKVTAAMVS 244
Query: 241 -----SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
++ + + ++ I+ + + ++ + E +F+ + PL + M ++A +
Sbjct: 245 GALLKPDRMTTIALFQFIRHLQDNGQA----AQKYEIEFWRKVFYPLSCLVMVVLALPFA 300
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI--- 352
RS V G+ +G + + + G P AA P +L +LS+
Sbjct: 301 YLHFRSGGITAYVFGGVMAGISFFLLNNVFGYIGTLQSWWPWLAAAAPGLLYTALSLSAF 360
Query: 353 -LILLQK 358
++L++
Sbjct: 361 GWLVLRR 367
>gi|262280664|ref|ZP_06058447.1| permease YjgP/YjgQ family protein [Acinetobacter calcoaceticus
RUH2202]
gi|262257564|gb|EEY76299.1| permease YjgP/YjgQ family protein [Acinetobacter calcoaceticus
RUH2202]
Length = 356
Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats.
Identities = 61/361 (16%), Positives = 139/361 (38%), Gaps = 21/361 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGEL-PNYSISRGAVLAATRVPLIIQ 64
R KY KTT + G +++ ++ L ++GEL P+Y+ + + P +
Sbjct: 5 RIVAKYVTKTTALAMFGTTVVLSILQVLFTYLGELGELKPDYNAWQALIYVLWGAPRYLY 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+I+P L+ ++ +L +SEL++ R+ GIS+W+++ + ++LL I + + +
Sbjct: 65 EILPISALIGAVIGLGSLATSSELIVMRSAGISLWRIVGWVMRSALLLIILSFALSEWVI 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + W + + FI + + +D +
Sbjct: 125 PYTNEKAQSV--KSHRSVAALGEVKGYWSR----EGQRFIYIDYANSQGN-LKDIQVVDF 177
Query: 185 DKKNKIIHRKDADLAII-YNDKVKLKKVVEYQY----GRIPIDKNSTTLNIPIKMDGFQK 239
D+ + +A N + LKK + I D + +L + ++
Sbjct: 178 DQNYYLQSLINAQQGQFVKNGQWALKKAEQMDILAAGNAIKTDHDEQSLALALQPKYVHM 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S ++I M + ++ + + F+ + P L+A+ L+A S
Sbjct: 238 VTLDPEDLSPSQLISFMRYMDEYSQVPKT-YQLAFWQKVASPFSLIALVLVACSFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL---IPVILTISLSILILL 356
R + +F G Y + G + ++ + A +P++L +L
Sbjct: 297 RQQSMGFRLVIALFIGLSFYYLQDF---LGYASLVYSPSPAWFVLVPILLMFGAGSYLLY 353
Query: 357 Q 357
+
Sbjct: 354 R 354
>gi|258544322|ref|ZP_05704556.1| membrane protein [Cardiobacterium hominis ATCC 15826]
gi|258520402|gb|EEV89261.1| membrane protein [Cardiobacterium hominis ATCC 15826]
Length = 350
Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats.
Identities = 58/358 (16%), Positives = 137/358 (38%), Gaps = 17/358 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + L T+L L + + +++ ++ + +G+ NY+++ + +P +
Sbjct: 5 DRYLLRTILATSLIALAFLLAVDYIVQISVDADDLGQ-GNYTLAILLLQLLLVLPEKLLL 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
P L+ I+ L +E+ + RA GIS +L + ++++G+ ++ +A
Sbjct: 64 YTPAAVLIGTIMGLGQLAAQNEIAVVRAAGISRLRLARAGIAFALIVGVLNIVNGETLAP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
L Q + W++ Q+ I + P+ + +
Sbjct: 124 QLADRSRLLRNQALGQSSDPGREQGIWLKQ----QNTHIHIGALNPDGSLAR---IRSYY 176
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEY-----QYGRIPIDKNSTTLNIPIKMDGFQKF 240
I +AD A +L+ + + R+ ++ P +
Sbjct: 177 SDADSITISEADRATWQAPDWQLENPRAWRTRADKTERLTAPESWQNGATPQALHALSAV 236
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
R Y + + M+ +N ++ + + + ++ PL AM L+A + +R
Sbjct: 237 KSAETLRELYTLTRFMA----ANGLNHQQQSLKLWQRLLTPLTTAAMVLLALPFTFGNAR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S Q + GI G Y I ++ + P+ A +P+++ +++L+++
Sbjct: 293 SGQQGTRLVTGILLGVAYYVISGVIANLALLLHWPPLLGAALPILIFTLPPLILLMRQ 350
>gi|300312407|ref|YP_003776499.1| permease [Herbaspirillum seropedicae SmR1]
gi|300075192|gb|ADJ64591.1| permease transmembrane protein [Herbaspirillum seropedicae SmR1]
Length = 376
Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats.
Identities = 62/371 (16%), Positives = 122/371 (32%), Gaps = 22/371 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RYF ++ L+ L + L ++ Q+G Y + + +P +
Sbjct: 3 VIQRYFTSEITRSVLFALAAFLALFAFFEMMGQLEQVGRN-GYKLQQAVFYVLMGLPGNV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P L+ I L SE I R +S Q + + T++ I
Sbjct: 62 YELMPTAVLIGTIYTLSQLAARSEFTIMRVSSMSTGQAARVLARIGVGFAVLTIVFGELI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPW----MQISNPQQDI----FIGAKKILPENHI 175
A + L Q + + W ++ + ++ FI + + P+ I
Sbjct: 122 APKATEWAEKLKLQAQGASLSSQFRSGMWAKDVIRDHGLEGNVVGSRFINIRTVQPDGRI 181
Query: 176 WEDFTSITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIP----------IDKN 224
E +D + A + N + L VV+ + +
Sbjct: 182 -EGVKLYELDSDFHMARMVTAKAGMYDGNHQWTLSDVVQSDFTGGSDRKITEPVKTVKSA 240
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
TL + + S Y+++ +N R E F+ IV PL +
Sbjct: 241 QLTLVSEVTPEILSVLFADPDRMSAYDLLAYTKHLE-ANNQRTDRYEIAFWKKIVYPLSI 299
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
M +A + R+ + + GI G I ++ G A +P
Sbjct: 300 FVMLALALPFAYLHFRAGGVSLKIFTGIMIGVCFQLINSLFSHLGLLNTWPAFVTAALPS 359
Query: 345 ILTISLSILIL 355
+L ++L+ L
Sbjct: 360 LLFMALAAGAL 370
>gi|328954009|ref|YP_004371343.1| permease YjgP/YjgQ family protein [Desulfobacca acetoxidans DSM
11109]
gi|328454333|gb|AEB10162.1| permease YjgP/YjgQ family protein [Desulfobacca acetoxidans DSM
11109]
Length = 372
Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats.
Identities = 49/361 (13%), Positives = 120/361 (33%), Gaps = 15/361 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P +L Y + + + L + + +ID E +++ ++PL
Sbjct: 15 PRLLMLYVAREFCRNFFLTLAAFVGIYLIIDFFEKIDRL-HRAQLGFVGILEYFGAKLPL 73
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
Q++P L+ I+ F L R +E + G++I LL P ++ + +L +F + +
Sbjct: 74 ATGQVLPASVLLAVIITFGILARHNETTAIKCAGLNITILLRPILLLASVLVLFLLSLNL 133
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + D ++ + W+ + + E+
Sbjct: 134 FLTPWLTQRVNIIWETKVDKKPARELIDLKWLWYKGD--RAIFHISEFRKDTKSMENVKI 191
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-------GRIPIDKNSTTLNIPIKM 234
D++ + A A + + + +++ P
Sbjct: 192 YVFDQQFHLTQFIAAQRAQWTGQNWRFSDGMIQTFLPQGEIVSEAFVERTMILTERPEDF 251
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
++ + Y I+++ + + + + I L + +TLI +
Sbjct: 252 VNLERRVTELNGYDLYRYIRRLERDG----YDSRPYWVELHSRIAFALTPIIVTLIGGGL 307
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + GI F+ + + T S G+ + + AA + I+ L
Sbjct: 308 IF-WREKGNISLGIVSGIALVFIYWLLSTFFLSLGQVRFMPVLLAAWLANIIFGLGGFLA 366
Query: 355 L 355
L
Sbjct: 367 L 367
>gi|37522902|ref|NP_926279.1| hypothetical protein gvip459 [Gloeobacter violaceus PCC 7421]
gi|35213904|dbj|BAC91274.1| ycf84 [Gloeobacter violaceus PCC 7421]
Length = 384
Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 67/376 (17%), Positives = 139/376 (36%), Gaps = 26/376 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRVP 60
I+ Y L L+ + L ++ L E+ M + S++ A + A R+P
Sbjct: 14 LKIVDLYLVSELLLPFLFGVATFASLGMIVGSLFELVRAMLDN-GLSVTVAAQVFALRLP 72
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+I P L+ ++ + L+ +E V RA G+S+++L+ P + +L+ T +
Sbjct: 73 SVIVITFPTAMLLATLLAYARLSGDAETVAMRACGMSVYRLVLPALAVGLLVTGATFMCN 132
Query: 121 NPIATSGEKIGIDLIQQW--KDNGDKQKSDII------PWMQISNPQQDIFIGAKKILP- 171
+ + L+ Q +D D QK +II + P +
Sbjct: 133 ELVVPASNAEASRLLFQAIDRDKPDFQKDNIIYPEYGFVTPRDGRPTYHTLVRLFYARQF 192
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYG-----RIPIDKN 224
I + T + + I A A+ N L+ Y R +
Sbjct: 193 AGGIMRELTVLDYSQDA-INQVITAAAAVYDNRSGSWTLQDGTVYVVAPDGSYRNVLRFK 251
Query: 225 STTLNIPIKMDGF--QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
+ + + + F E + I+++ S + + IP+
Sbjct: 252 RQQVKLSERPEQFGGGARPEDLPIAQLSDYIRRLELSQQQVRT----LQVSLQQKYAIPV 307
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
L+ A++ L R++ + + I F Y ++ + ++ G++G++ P A
Sbjct: 308 TCFVFALVGATLGLRRVRTSN-ALGLGLSILIIFGYYLLMFVAQALGQTGVIAPWLGAWA 366
Query: 343 PVILTISLSILILLQK 358
P + T +L +L+L +
Sbjct: 367 PNLATGALGVLLLWRT 382
>gi|294341187|emb|CAZ89588.1| putative permease YjgP/YjgQ [Thiomonas sp. 3As]
Length = 365
Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 66/359 (18%), Positives = 133/359 (37%), Gaps = 18/359 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R+ + L L + L+F ID+ + +G+ P +S+S + A +P ++
Sbjct: 6 RFLLLHVLSAVGLVTLAFLALLFFIDMLNDLSNLGK-PGFSLSGTLLHVALSMPSRAYEV 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P TLV + +L +SE I R G+S L + + L + L+ +A +
Sbjct: 65 LPIATLVGGVFALASLAASSEFTILRISGLSPRAALGLLLQLAAALVVTLFLLGEWLAPA 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ L Q + + S+ + + K I D ++
Sbjct: 125 AGQLSARLQAGGGSGIGTQLASGVWLRNDSDRSGNQTVNIKAINTRGD-LTDIHIYVLNA 183
Query: 187 KNKIIHRKDADLAIIYNDK-VKLKKVVEYQY----------GRIPIDKNSTTLNIPIKMD 235
+ +I A L V + ++P + T+L+ P +
Sbjct: 184 QAQIAAELHAPSGQYEGGGTWMLHNVTRTELPQQTGAALKVTQLPSYRWRTSLS-PSVLG 242
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
++ ++ + I+ + ++++ R E Q + + P V M L+A +
Sbjct: 243 VLLLSPDKMSAIDLWRYIQHLRANHQA----AERYEIQLWKKLFYPFSAVVMLLLALPFA 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+RS V GI G + T+ S G G P A +P++L L +++
Sbjct: 299 YLHTRSKGVSGKVLAGIVLGIAFILLNTLFSSLGILGTWPPAITAAMPMLLFGGLGLIV 357
>gi|114776388|ref|ZP_01451433.1| hypothetical protein SPV1_01672 [Mariprofundus ferrooxydans PV-1]
gi|114553218|gb|EAU55616.1| hypothetical protein SPV1_01672 [Mariprofundus ferrooxydans PV-1]
Length = 352
Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 52/360 (14%), Positives = 129/360 (35%), Gaps = 14/360 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+++R+ F L +L + + + +I+ + +G ++P +
Sbjct: 2 PVVFRWIFSGCLSRSLVTMSALLAIFVIIESFDKARYLGH--GLDGRLMVEYMLLKIPFM 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + +P I L+ + L+R E+V RA G+ I ++L P ++L + + ++
Sbjct: 60 LSEFMPVIMLIGASLYLIELSRNQEVVALRAAGLGINKVLLPLSSVALLAALASFIIGEW 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ +D I+Q K + W++ + ++ P + +
Sbjct: 120 VTPVTNTR-LDQIEQVHIQHKKSSQPGVQWLKDGH-------RFFRLTPLTNHQFALLML 171
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY--GRIPIDKNSTTLNIPIKMDGFQKF 240
+ R D+ A L ++ + + + +
Sbjct: 172 KTAPDGAWLQRIDSPRAHYSQGVWSLSDARVSTPSSDQVMHVEKLKNMEVKSAIGPETAD 231
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL-EFS 299
+ F E+ ++ + + + PL + M ++AA++ L +
Sbjct: 232 LPKPGHMDFSELYHYINNLKHAGLGAGT-YVYALHRKFSAPLACLLMVIMAAALCLHTGN 290
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R+++ + I G + Y I S + P AA +P ++ ++ +LL++E
Sbjct: 291 RNSRASWGLMLSISLGLVFYVIGNAGYLLAASNRIPPAFAAWLPSLVFGGTAVFLLLKRE 350
>gi|254424599|ref|ZP_05038317.1| putative permease, YjgP/YjgQ family [Synechococcus sp. PCC 7335]
gi|196192088|gb|EDX87052.1| putative permease, YjgP/YjgQ family [Synechococcus sp. PCC 7335]
Length = 397
Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 61/362 (16%), Positives = 126/362 (34%), Gaps = 23/362 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY K L+ + + I L E+ ++ + S + + +P
Sbjct: 25 IMDRYIAKELTLPFLFGVGAFSSIAVSIGALFELIRKVAD-AGLSATLAFEIFLLSLPTF 83
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P TL+ ++ + + SEL+ R G+SI +++ P V+ S+L+ + V
Sbjct: 84 TVLAFPMSTLLATMMTYSRFSSDSELIAMRGCGVSINRIVAPAVILSLLVTGLSFSVNEI 143
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI-------SNPQQDIFIGAKKILPENHI 175
IA + + L+ + D+ + Q S + F A+ +
Sbjct: 144 IAPASTERAALLLARALDDEKPPFREGNIVFQQQEPAADGSGDELVRFFYARNF--DGTT 201
Query: 176 WEDFTSITI---DKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIP-----IDKNS 225
D T + D ++ + AD A + + Y I +
Sbjct: 202 MRDITVVDFSQEDSEDGLKQIVSADAATWDFTRNLWEFTNGTIYAVSPTGSFRQIIRFDK 261
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLML 284
L +P +++ + E + ++ ++ R IP
Sbjct: 262 QDLQLPRTPLDLANRTKKQEEMNIAETKEYLTILQQTGDEKAVRKLAVAIQRKYAIPFAC 321
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
V L+ A+V + R+ + + F Y + I + G+SG++ P A +P+
Sbjct: 322 VVFGLVGAAVGVRPQRTGK-ATSFGISVVIIFGYYLLSFITSAMGESGVITPFLAGWVPL 380
Query: 345 IL 346
+
Sbjct: 381 FI 382
>gi|330813915|ref|YP_004358154.1| putative permease YjgP/YjgQ family protein [Candidatus Pelagibacter
sp. IMCC9063]
gi|327487010|gb|AEA81415.1| putative permease YjgP/YjgQ family protein [Candidatus Pelagibacter
sp. IMCC9063]
Length = 375
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 70/361 (19%), Positives = 142/361 (39%), Gaps = 12/361 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLN-EIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
YF K ++ + L L L +I+ E+ + I +L + P I ++
Sbjct: 12 YFSKEFIFSLLLVFLVFFSLSLLINSVGELIYLKDKKLENVIWMATILTLAKTPTTIIEL 71
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
FI L I+ F + + +E+ GIS + + S + G+F + + I+++
Sbjct: 72 SIFIFLFSGILFFVKIQKNNEVNTMLLAGISKTLPILIPSIISFICGLFIIFFLTSISSA 131
Query: 127 GEKIGIDLIQQWKDNGDK-QKSDIIPWMQISNPQQDIFIGAKKILPEN-HIWEDFTSITI 184
+ + N + + + W + I A KI N +I + T +
Sbjct: 132 SLNFYEQEKRIYSSNDNLIVMNKMGLWFMENTTSGYNIIRADKIEKNNFNILNNVTIYNL 191
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN--------STTLNIPIKMDG 236
D+ + R D++ I + L K Q + D + + I ++
Sbjct: 192 DQGFNFVKRYDSEKITINQKRWSLNKTQVTQEKKSLSDSKKDNDASLVEMSFDSSININD 251
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + SF+E+ K + N S + +F+ + +P L AM L++ + ++
Sbjct: 252 LKNYFTDVNTVSFWEMFKTIKTLN-SRGYSAEELRVKFHKYLSLPFYLFAMILVSTTFTM 310
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
++ + + +G G +Y + + SFG S L + PV L I LS + L+
Sbjct: 311 GANKQYNTFMYLFFGTILGVCIYFLNDLSISFGLSNKLPLAISVWSPVGLIIILSTINLI 370
Query: 357 Q 357
+
Sbjct: 371 R 371
>gi|221066428|ref|ZP_03542533.1| permease YjgP/YjgQ family protein [Comamonas testosteroni KF-1]
gi|220711451|gb|EED66819.1| permease YjgP/YjgQ family protein [Comamonas testosteroni KF-1]
Length = 367
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 64/367 (17%), Positives = 138/367 (37%), Gaps = 24/367 (6%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMG-ELPNYSISRGAVLAATRVPLIIQQII 67
++ ++ LY L + L F DL + +G Y+ +R + +P + +++
Sbjct: 8 IYREVIQAVLYVSLAFLALFFFFDLVDEMRWVGSGNAGYTATRALLFVTLSIPGHLYELM 67
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P L+ I V ++SE I R G+ W L ++ + + TVLV + IA +
Sbjct: 68 PIAVLIGAIFVMAKFAQSSEFTIMRTSGMGPWLALRTLLILGMSFVLLTVLVGDYIAPAA 127
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ L G + W++ + I + + D K
Sbjct: 128 DNFSQKLRVV--SKGQISRGATGAWLKEKQGDHSVAINVGAVKSPGDFV-NVRIFEFDSK 184
Query: 188 NKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDK-----NSTTLNIPIKMDGFQKF 240
+I + +A A + D + L V + + + ++N P K+
Sbjct: 185 GRIAAQINAQSAQVDEDEEQWTLHGVQGSKVAQEGDVTKLSPISEASMNWPTKVTAAMVS 244
Query: 241 -----SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
++ + + ++ I+ + + ++ + E +F+ + PL + M ++A +
Sbjct: 245 GALLKPDRMTTIALFQFIRHLQDNGQA----AQKYEIEFWRKVFYPLSCLVMVVLALPFA 300
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI--- 352
RS V G+ +G + + + G P AA P +L +LS+
Sbjct: 301 YLHFRSGGITAYVFGGVMAGISFFLLNNVFGYIGTLQSWWPWLAAAAPGLLYTALSLSAF 360
Query: 353 -LILLQK 358
++L++
Sbjct: 361 AWLVLRR 367
>gi|17231561|ref|NP_488109.1| hypothetical protein alr4069 [Nostoc sp. PCC 7120]
gi|17133204|dbj|BAB75768.1| alr4069 [Nostoc sp. PCC 7120]
Length = 371
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 59/370 (15%), Positives = 129/370 (34%), Gaps = 20/370 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+ RY L T L+ + + ID + E+ ++ E +S + ++P I
Sbjct: 1 MDRYLTSELLPTFLFGVGAFSSIGVTIDAVFELVRRVVE-SGLPVSIAVQVFLLKLPNFI 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P TL+ ++ + L+ SEL+ R G+S+++++ V+ S ++ T L I
Sbjct: 60 VLAFPMSTLLATLMTYSRLSSESELIALRGCGVSVYRMVMTAVMLSFVVTGLTFLFNEQI 119
Query: 124 ATSGEKIGIDLIQQWKDN---GDKQKSDIIPWMQI----SNPQQDIFIGAKKILP-ENHI 175
A + + + + KQ++ P + + I +
Sbjct: 120 APAANYQATLTLDKALKSDKPTFKQQNIFYPEYRDIQEKDGTKNRILTRLFYADQFDGKR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYG-----RIPIDKNSTTL 228
+ T I + A+ A + Y R + L
Sbjct: 180 MKGLTIIDRSTDG-LNQIVVAESAEWNGAQSIWDFYNGTIYLVAPDRSYRNILRFEKQQL 238
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVAM 287
+P + S + + + + +++ R E + +P + V
Sbjct: 239 KLPRTPLSLAEQSRDYGEMNIAQALDQLNIERLGGDRQKIRKLEVRIQQKFALPFVCVVF 298
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
L+ A++ R+ + + F Y + I + G++GI P A +P +
Sbjct: 299 GLVGAAMGTIPQRTGK-GTSFGISVIVIFSYYLLGFITGALGQAGIFSPFIGAWLPNFIG 357
Query: 348 ISLSILILLQ 357
+ + I +L++
Sbjct: 358 LGVGIFLLVR 367
>gi|149927924|ref|ZP_01916174.1| YjgP/YjgQ like transporter [Limnobacter sp. MED105]
gi|149823363|gb|EDM82596.1| YjgP/YjgQ like transporter [Limnobacter sp. MED105]
Length = 401
Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats.
Identities = 65/376 (17%), Positives = 129/376 (34%), Gaps = 34/376 (9%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
YF K + ++ + L DL +++ LP S V +P + +I
Sbjct: 14 YFRSELYKAISFVMVAFVGLFAFFDLIAEVDRLS-LPGTSWFYYFVAVLLGLPARVYEIA 72
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P L+ +I L +SEL RA G+S +L V + + + TVL +A
Sbjct: 73 PIAALIGSIYALVQLAASSELTAMRAAGLSTTSMLKMLVRIAAGVVVITVLFGEAVAPLA 132
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI-----FIGAKKILPENHIWEDFTSI 182
E+ + + + + WM+ + D F+ + + +
Sbjct: 133 ERAAVPMRAKALGYEVDRDFRSGYWMRDTYSAPDAESRVRFVNFDSFNKDGELLK-LEYY 191
Query: 183 TIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQY-------------GRIPIDKNSTT 227
+D +++I A+ A +L+ V+ +Y G +
Sbjct: 192 ELDPESRIRAWVRAESAKFDPDSGDWELRNVLVQRYFDEAVSNANAARAGLTIQASEFES 251
Query: 228 LNI--------PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
L P + G ++ ++ Y K +S SN+ + F I+
Sbjct: 252 LETMRWTSNLSPELLTGLFVRPDRMSAWQLYNYSKFLS----SNLQATDNIDLAFAKKIM 307
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
P ++ M +I+ + RS + V G+ G + + + P +
Sbjct: 308 YPFAILIMMMISLPFAYLHFRSGSVSVKVFAGVMIGVGFHLVNNLFSHLSMVASFPPFVS 367
Query: 340 ALIPVILTISLSILIL 355
A +P +L + + L
Sbjct: 368 AALPSLLGFVVGMGAL 383
>gi|296137010|ref|YP_003644252.1| permease YjgP/YjgQ family protein [Thiomonas intermedia K12]
gi|295797132|gb|ADG31922.1| permease YjgP/YjgQ family protein [Thiomonas intermedia K12]
Length = 365
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 65/355 (18%), Positives = 124/355 (34%), Gaps = 10/355 (2%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R+ + L L + L+F ID+ + +G+ P +S+S + A +P ++
Sbjct: 6 RFLLLHVLSAVGLVTLAFLALLFFIDMLNDLSNLGK-PGFSLSGTLLHVALSMPSRAYEV 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P TLV + +L +SE I R G+S L + + L + L+ +A +
Sbjct: 65 LPIATLVGGVFALASLAASSEFTILRISGLSPRAALGLLLQLAAALVVTLFLLGEWLAPA 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ L Q + + S+ + + K I D ++
Sbjct: 125 AGQLSARLQAGGGSGIGTQLASGVWLRNDSDRSGNQTVNIKAINTRGD-LTDIHIYVLNA 183
Query: 187 KNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIP------IDKNSTTLNIPIKMDGFQK 239
+ +I A L+ V + + I S +
Sbjct: 184 QAQIAAELHAPSGQYEGGGTWMLQNVTRTELPQQTGAALKVIQLPSYRWRTSLSPSVLGV 243
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S ++ + + ++N R E Q + + P V M L+A + +
Sbjct: 244 LLLSPDKMSAIDLWRYIQHL-RANHQAAERYEIQLWKKLFYPFSAVVMLLLALPFAYLHT 302
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS V GI G + T+ S G G P A +P++L L +++
Sbjct: 303 RSKGVSGKVLAGIVLGIAFILLNTLFSSLGILGTWPPAITAAMPMLLFGGLGLIV 357
>gi|307543949|ref|YP_003896428.1| permease [Halomonas elongata DSM 2581]
gi|307215973|emb|CBV41243.1| K07091 [Halomonas elongata DSM 2581]
Length = 354
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 62/359 (17%), Positives = 131/359 (36%), Gaps = 18/359 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L + + L VI + +Y + R+P
Sbjct: 6 LDRYIARNVLGAILVVQVVLLGLDLVITYINDLGDVE--GDYGALQVFFYLVMRLPWRFY 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q P L+ ++ + ++EL + RA G S+ ++L + IL+ + + ++
Sbjct: 64 QYAPVGVLIGALIGLGGMASSNELTVMRAAGRSLARILWGVMKPVILVIAVVLFIAEFVS 123
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
S E+ + ++ W + + D F I +N + D T
Sbjct: 124 PSTEQYASAWRLEKMQGEGAVLTERGGWQR----EGDSFYRFGAIRVDNVVL-DLTRYRF 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY--GRIPIDKNST----TLNIPIKMDGFQ 238
+ ++ A A+ + L+ V ++ GR + +T T P +++
Sbjct: 179 -EGRELREAVSARRAVWRDGGWVLENVDITRFVDGRTEVTHQATRPWQTELTPAELNRLL 237
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ E A + + + + + F+ +++PL + ++ L+AAS
Sbjct: 238 RRVETQAPSELWAHARYLEAQGQ----DATQPLLYFWQKMLMPLTMASLMLVAASFVFGP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS V YG+ +G + + ++ P A L P ++ +L +L +
Sbjct: 294 LRSVAAGTRVFYGVITGLVFKYLQDLLGPASTVFGFSPAWAVLAPTLICAALGFYMLRR 352
>gi|237747611|ref|ZP_04578091.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
gi|229378973|gb|EEO29064.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
Length = 381
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 67/377 (17%), Positives = 115/377 (30%), Gaps = 27/377 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RYF L++ L+ L + L DL + +G Y + + P
Sbjct: 2 KILQRYFLSQILRSVLFVLFAFLGLFAFFDLIGELSSVGR-GGYQLQHVLIYILLGFPGY 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +++PF L+ I SE I R +S ++ +FT LV
Sbjct: 61 IYELMPFAVLIGTIYALAMFASNSEYTIMRVSSLSTLDACWMLAKVGLVFLVFTFLVGEV 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPW----MQISNPQQDIF----IGAKKILPENH 174
I ++ + W ++ + + KK+ P+
Sbjct: 121 ITPVSARVATEFRNNLIGRAVGDGFRTGMWSKDTIRKDGIDGPVIGSRFMNVKKMQPDGT 180
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAI-IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP-- 231
E + ++ A A + N + +L +VVE + P
Sbjct: 181 -LEQIRLYEFNDNLELTKTVSAKNARYLGNHEWQLNEVVESHLTAANTKNKKFPDSAPSL 239
Query: 232 -------------IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
I D S S YE+ + N + F+ I
Sbjct: 240 NTKKLDSLIMVSDITPDILSVISVDANKMSAYELAIYNQHLVE-NKQDATSYQMAFWKKI 298
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+ P + M +A + RS + + GI G I + G P
Sbjct: 299 IYPFSVFVMMALALPFAYLHFRSGGVSLKIFSGIMIGVAFILINNLFSHVGLLNTWPPFL 358
Query: 339 AALIPVILTISLSILIL 355
A+IP L +++ L
Sbjct: 359 TAVIPSALFFLSAVIAL 375
>gi|88703587|ref|ZP_01101303.1| Predicted permease YjgP/YjgQ family protein [Congregibacter
litoralis KT71]
gi|88702301|gb|EAQ99404.1| Predicted permease YjgP/YjgQ family protein [Congregibacter
litoralis KT71]
Length = 352
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 64/354 (18%), Positives = 132/354 (37%), Gaps = 11/354 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + + L LL + + + + + +Y + +P +
Sbjct: 4 LNRYVARTVWLSILLVLLVIVGIDGLSAFIDESD--SRSASYGFAEIGRYVMLTMPRRVY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ IPF L+ ++ L TSELV+ RA GIS +L + ++++ +F L+ IA
Sbjct: 62 EFIPFAALIGALIGLGQLASTSELVVMRAAGISNGRLAWMVLKQALVIAVFGFLLGEYIA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ + G + ++ W + +F + I P+N + T+
Sbjct: 122 PKAEQQAQSGRAIARYAGRQVDTEQGIWRR----DGAVFFHVQAIAPDNEV-FGVTAYEF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQKFS 241
++ + AD + +L+ V ++ R + K S L I +
Sbjct: 177 EEDGWMQRALFADSGRYDGEGWRLRDVQSSEFSRDRVRKASAPALFLPSNITPKILSLEN 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + +++ +F +S E + ++ P + A+ LIA S R
Sbjct: 237 VAPSQLTLVDLVDYAAFL-RSQGEDVADFELATWRKLMQPAAVAALVLIAISFVFGPLRD 295
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ G+ G + ++ P+ AAL PV+ + + + +L
Sbjct: 296 GTLGFRIFAGVMVGILFQLSQDLLGPASLVFGFPPLYAALAPVLSCVLVGLYLL 349
>gi|166367866|ref|YP_001660139.1| hypothetical protein MAE_51250 [Microcystis aeruginosa NIES-843]
gi|166090239|dbj|BAG04947.1| hypothetical protein MAE_51250 [Microcystis aeruginosa NIES-843]
Length = 389
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 66/373 (17%), Positives = 137/373 (36%), Gaps = 21/373 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
IL RY F L L+ + L V + L ++ ++ E + + ++P
Sbjct: 16 FSILDRYIFVELLLPFLFGMGLFTSLGVAIGTLFDLVRRITE-SGLPFTLALKILLLKMP 74
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ + L SEL+ ++IGIS+++L+ P +V S+++ T +
Sbjct: 75 EFIVLAFPMSILLAALMAYSRLASDSELIALKSIGISVYRLIIPAIVLSLIVTGLTYVFN 134
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQ-DIFIG----AKKI 169
+ +A + + + K + ++ + + + A++
Sbjct: 135 DYVAPAASYEANATMTKALRPNRKSFIEDNIIYPEYGKVRQPDGGEPQTVLRRLFYAERF 194
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKN 224
+ + T + N+II + A I + Y R +
Sbjct: 195 NGQEMLGLTILDRTQPEVNQIITSESA-SWNIEKNIWDFYNGTIYLIDPKGSYRNIVRFQ 253
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLM 283
L +P + + + + + + S R + Q I +P +
Sbjct: 254 HQQLALPRTPLDLAFRARDGSEMTLRQAREYLEILQLSGNPTKIRKLQVQIEQKISLPFV 313
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ +I A++ L SN+ I F Y + + S G G+L P+ AA +P
Sbjct: 314 CLVFGMIGAALGLRPQNSNK-ATSFGICIVLIFSYYLLSFVTSSLGIGGVLTPLMAAWLP 372
Query: 344 VILTISLSILILL 356
IL ++ ++LL
Sbjct: 373 NILGLTAGGILLL 385
>gi|86605895|ref|YP_474658.1| YjgP/YjgQ permease [Synechococcus sp. JA-3-3Ab]
gi|86554437|gb|ABC99395.1| putative permease, YjgP/YjgQ family [Synechococcus sp. JA-3-3Ab]
Length = 400
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 55/376 (14%), Positives = 131/376 (34%), Gaps = 25/376 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G++ RY L + + LV + ++ S+S + R P I
Sbjct: 26 GLMDRYIISEMLLPFFFGVGAFTTLVMAVGSLFELVRLVVEAGLSLSAALQVFVLRAPGI 85
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I P L+ ++ + L+ +E+ R G+S+++L+ P ++ S+L+ T L
Sbjct: 86 IVLTFPMSMLLATLLAYGRLSADNEITALRGCGVSLYRLVVPALLLSLLVTTLTFLFNEL 145
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS-----------NPQQDIFIGAKKILP 171
+ + + + + + + + I + + + +Q +
Sbjct: 146 VVPVSNRQAALTLNRALNRTPEFRRENILYQEFGEILAPEPDGTFSRRQGLTRQFYARSF 205
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTL- 228
+ + + + + A + ++ Y N T
Sbjct: 206 DGQQMRGVIVLDLSNEA-LSQILLAQQGRWDPQENLWVFEEGTNYIVSPDGTYSNIATFA 264
Query: 229 -------NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
P+ + + E+ + I+ ++ S R + IP
Sbjct: 265 RQELRLPRAPLDLAQEVRSPEEMNIQELRRYIEVIASSGDLQGV--RRLQVSLSQKYAIP 322
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+A TLI A ++L R++ + + + F Y ++ + ++ G+ G L P AA
Sbjct: 323 FACLAFTLIGAPLALRPQRTSSS-LGLGLSVLIIFAYYVLLFVSQALGQIGTLGPEVAAW 381
Query: 342 IPVILTISLSILILLQ 357
+P + ++ + +L +
Sbjct: 382 LPNFICSAVGLGLLYR 397
>gi|299530037|ref|ZP_07043464.1| permease YjgP/YjgQ [Comamonas testosteroni S44]
gi|298722017|gb|EFI62947.1| permease YjgP/YjgQ [Comamonas testosteroni S44]
Length = 367
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 67/367 (18%), Positives = 140/367 (38%), Gaps = 24/367 (6%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMG-ELPNYSISRGAVLAATRVPLIIQQII 67
++ ++ LY L + L F DL + +G Y+ +R + +P + +++
Sbjct: 8 IYREVIQAVLYVSLAFLALFFFFDLVDEMRWVGSGNAGYTATRALLFVTLSIPGHLYELM 67
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P L+ I V ++SE I R G+ W L +V + + TVLV + IA +
Sbjct: 68 PIAVLIGAIFVMAKFAQSSEFTIMRTSGMGPWLALRTLLVLGMSFVVLTVLVGDYIAPAA 127
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ L K G + W++ + I + + D K
Sbjct: 128 DNFSQKLRVVAK--GQISRGATGAWLKEKQGNHSVAINVGAVKAPGDFV-NVRIFEFDSK 184
Query: 188 NKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDK-----NSTTLNIPIKMDGFQKF 240
+I + +A A + DK LK V + + + ++N P K+
Sbjct: 185 GRIAAQINAQSAQVDEDKELWTLKGVQGSKVAQEGDVTKLSRISEASMNWPTKVTAAMVS 244
Query: 241 -----SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
++ + + ++ ++ + + ++ + E +F+ + PL + M ++A +
Sbjct: 245 GALLKPDRMTTIALFQFVRHLQDNGQA----AQKYEIEFWRKVFYPLSCLVMVVLALPFA 300
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI--- 352
RS V G+ +G + + + G P AA P +L +LS+
Sbjct: 301 YLHFRSGGITAYVFGGVMAGISFFLLNNVFGYIGTLQSWWPWLAAAAPGLLYTALSLSAF 360
Query: 353 -LILLQK 358
++L++
Sbjct: 361 GWLVLRR 367
>gi|293610040|ref|ZP_06692341.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827272|gb|EFF85636.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325124205|gb|ADY83728.1| hypothetical protein BDGL_003142 [Acinetobacter calcoaceticus
PHEA-2]
Length = 356
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 62/361 (17%), Positives = 139/361 (38%), Gaps = 21/361 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGEL-PNYSISRGAVLAATRVPLIIQ 64
R KY KTT + G +++ ++ L ++GEL P+Y+ + V P +
Sbjct: 5 RIVAKYVTKTTALAMFGTTVVLSILQVLFTYLGELGELKPDYNAWQALVYVLWGAPRYLY 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+I+P L+ ++ +L +SEL++ R++G+S+W+++ + ++LL I + + +
Sbjct: 65 EILPISALIGAVIGLGSLATSSELIVMRSVGVSLWRIVGWVMRSALLLIILSFALSEWVI 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + W + + FI + + D +
Sbjct: 125 PYTNEKAQSV--KSHRSVAALGEVKGYWSR----EGQRFIYIDYANSQGN-LRDIQVVDF 177
Query: 185 DKKNKIIHRKDADLAI-IYNDKVKLKKVVEYQY----GRIPIDKNSTTLNIPIKMDGFQK 239
D+ + +A I N + LKK + I D +L + ++
Sbjct: 178 DQNYYLQSLINAQQGQFIKNGQWALKKAEQMDILAAGNAIKTDHEEQSLALALQPKYVHM 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S ++I M + ++ + + F+ + P L+A+ L+A S
Sbjct: 238 VTLDPEDLSPSQLISFMRYMDEYSQVPKT-YQLAFWQKVASPFSLIALVLVACSFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL---IPVILTISLSILILL 356
R + +F G Y + G + ++ + A +P++L +L
Sbjct: 297 RQQSMGFRLVIALFIGLSFYYLQDF---LGYASLVYSPSPAWFVLVPILLMFGAGSYLLY 353
Query: 357 Q 357
+
Sbjct: 354 R 354
>gi|163854870|ref|YP_001629168.1| hypothetical protein Bpet0565 [Bordetella petrii DSM 12804]
gi|163258598|emb|CAP40897.1| conserved hypothetical protein [Bordetella petrii]
Length = 392
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 63/367 (17%), Positives = 124/367 (33%), Gaps = 22/367 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + ++ LL + L L + + +G+ +S+ + A +P + +
Sbjct: 6 RYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGDK--FSMLALLYMQALALPTRLYDL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I+ L + +ELVI R G+S +LL + ++ L I L+ + +
Sbjct: 64 LPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLRMLWLITLPLMIGASLLSEFVTPA 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI-FIGAKKILPENHIWEDFTSITID 185
E + ++ + D W + I K+L + ++ E T
Sbjct: 124 AEIKSGEASLMFRGKASGTRMDSGYWFKEPTRDGGTRIINIAKLLADGNV-EGVTLYEFK 182
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-----------------NSTTL 228
++ A DK+ LK VVE L
Sbjct: 183 PGLQLTTMSTAATGAFTRDKLVLKNVVETHIDDRAAQALADAKPPRTPPASVTKLPQREL 242
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ + + S ++ + + + + + R + + P L+ M
Sbjct: 243 DTTLSPERLLARVLTPERMSLNTLLDYIDYLHHNQL-DAGRQVVALWRKVSYPFTLLVMI 301
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
IAA + +R V GI G + + + + G P AL P +
Sbjct: 302 TIAAPIGFMQTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLSRWPPWLTALGPNVGAT 361
Query: 349 SLSILIL 355
L++ L
Sbjct: 362 LLALGAL 368
>gi|94987323|ref|YP_595256.1| permease [Lawsonia intracellularis PHE/MN1-00]
gi|94731572|emb|CAJ54935.1| predicted permeases [Lawsonia intracellularis PHE/MN1-00]
Length = 366
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 78/358 (21%), Positives = 154/358 (43%), Gaps = 15/358 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L+RY K K L L + + + DL E + E + S + P I
Sbjct: 3 LLFRYLIKNNTKILLLTLTIGIGVYILTDLFERLDNFIE-AHTSTKIILTYFIYKTPFAI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QI+PFI L+ ++ + + EL+ +A GIS ++ + ++ S+ G + I
Sbjct: 62 AQILPFIFLISTVIQLCIMAKKKELIALQAGGISFTRIASIIIIASLFWGTIQFIFSEYI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
T+ + + + Q++ N K K+ + W N +I + L + F++
Sbjct: 122 GTACGRKSLQIWQEYVHNQHKSKTILKDIWFTDKN-----WIVSINTLKPDDTGSGFSAY 176
Query: 183 TIDKKNKIIHRKDADLA-IIYNDKVKLKKVVEYQYG---RIPIDKNSTTLNIPIKMDGFQ 238
+DK I + L+ I+N++ LKKV + + + + + T N + F
Sbjct: 177 LLDKNGLTIEKIIWALSFSIHNNEWILKKVAVSEPALYSQEMLQELTLTFNQSSETLKFI 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + SF+E+ + + +S + +T ++ + LV M L+A ++
Sbjct: 237 QNNNAPQQLSFWELRETIHKLERSGS-NVELLKTSWHTKLSYSFSLVVMALLATTI---V 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ N I +A+ + F+ + TI S G GI+ P+ A I ++ +S++I L
Sbjct: 293 AWKNNIYIAIAFSLLYTFIYNALNTIGISLGNKGIISPIIGAWIANLVIMSVTIWKLF 350
>gi|241765202|ref|ZP_04763186.1| permease YjgP/YjgQ family protein [Acidovorax delafieldii 2AN]
gi|241365131|gb|EER60003.1| permease YjgP/YjgQ family protein [Acidovorax delafieldii 2AN]
Length = 368
Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats.
Identities = 56/365 (15%), Positives = 130/365 (35%), Gaps = 21/365 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP--NYSISRGAVLAATRVP 60
+L R+ + + LG + L F DL + +G Y +S + + +P
Sbjct: 2 KVLRRFIHREAFFAVGFVTLGFLALFFFFDLIDELRWVGSTGQNGYQLSHALLFVSLSIP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ I V L ++SE I R G+ W+ L + + T +
Sbjct: 62 SHLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGMGPWRALRTLLTLGGFFVLLTFAIG 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +A E+ + + + G W++ + + + + D
Sbjct: 122 DYVAPLTERAAQ--LIKVRHLGRLTSGATGAWLKERQQDHSFAVNVRALSSDGG-MVDVR 178
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDK------NSTTLNIPIK 233
D+K ++ + A L++V + + ++ ++ P +
Sbjct: 179 IFEFDEKGRLASQIHAATGQFGSAGTWDLQQVQRNSFVQKSSEEARVESISAPVWQWPTR 238
Query: 234 MDGFQK-----FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ ++ A+ ++ I+ + + +S R E +F+ + PL + M
Sbjct: 239 ISADMVAASLLKPDRMATVDLFQYIRHLEANGQS----AQRYEIEFWRKVFYPLSCLVMV 294
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
++A + R+ V G+ +G + + + G P A P ++
Sbjct: 295 VLALPFAYLHFRAGGIAGYVFGGVMAGISFFLLNNVFGYAGNLQNWSPWLTAAAPGLIYS 354
Query: 349 SLSIL 353
LS+
Sbjct: 355 VLSLA 359
>gi|119476402|ref|ZP_01616753.1| hypothetical protein GP2143_08124 [marine gamma proteobacterium
HTCC2143]
gi|119450266|gb|EAW31501.1| hypothetical protein GP2143_08124 [marine gamma proteobacterium
HTCC2143]
Length = 353
Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 129/360 (35%), Gaps = 19/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY +TL L + L + + + + NY VP +
Sbjct: 4 LGRYISTTITASTLLVLFMLLGLDAIAAIVDEMGYLS--GNYDFVAALRFVIYSVPATMF 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++PF LV + L SELV+ R+ G+S +++ + I++ I +LV +A
Sbjct: 62 DLLPFAALVGCLAGLGTLASGSELVVMRSAGVSTLRIVWMVMRPIIVVMIAGMLVSEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E I S W + +N F+ + P I T
Sbjct: 122 PVTESIAKSERAIALKKSQNIVSREGLWHREANR----FMHFNAVQPNG-ILYGVTMYQF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEY-------QYGRIPIDKNSTTLNIPIKMDGF 237
D+++K A AI + + L+ VVE + P ST L+ P ++
Sbjct: 177 DEQHKPQSTLYAQRAIYQSGEWLLEDVVESIITDTRVRKIASPSKPWSTELS-PELLNIL 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + ++ ++ F+ I+ PL +A+ L+A S
Sbjct: 236 MLDPIDLSIAGNDQYANYL----QAQGLNSSPYRLAFWKKILQPLSTLALVLLAISFIFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + G+ G + T I+ P+ A+LIP+++ L + L +
Sbjct: 292 PLREVTMGYRIFIGVLVGIVFRTAQDILAPASLVYGFQPIYASLIPIVICAVLGLWFLRR 351
>gi|209526011|ref|ZP_03274544.1| permease YjgP/YjgQ family protein [Arthrospira maxima CS-328]
gi|209493537|gb|EDZ93859.1| permease YjgP/YjgQ family protein [Arthrospira maxima CS-328]
Length = 392
Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats.
Identities = 55/377 (14%), Positives = 129/377 (34%), Gaps = 25/377 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + + ++ + + + + E+ ++ E +S + ++P
Sbjct: 21 VLDRYIIQELIPPFIFGVGLFTSVAVTVGTVFELVRRVAE-SGLPVSVAFQVFLLKMPDF 79
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P ++ ++V+ L+ SEL+ R+ GIS+++L+ P ++ S + T
Sbjct: 80 MVLAFPMSMILTTLMVYGRLSSDSELIAIRSCGISLYRLVIPAIIFSFFVTGMTFAFNEI 139
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWM-------QISNPQQDIFIGAKKILPE--N 173
I + +Q+ + + ++ + E +
Sbjct: 140 IVPAANFQATITLQKALNEDALNIRSTNIFFPEYERVSVEGTNRRVNVLRRLFYAEEFAD 199
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTL--- 228
T + + I + AI ++ Y +N
Sbjct: 200 GKMSGVTILDRSRAG-ITQIISSRTAIWNPEESTWDFYNGTVYIVDPDGSYRNIARFDHK 258
Query: 229 -----NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+P+ + + + E ++ M S + + + +P +
Sbjct: 259 QLYLSRVPLDLASQDRDYGEMNIAQTKEYLELMKLSGDQAKI--LKTKVRIQQKYALPFV 316
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
V L+ +S+ R+N+ + F Y + I + G+ GIL P AA +P
Sbjct: 317 CVVFGLLGSSLGSRPGRTNR-ATSFGISVMIIFAYYLLSFITGAMGQKGILSPFMAAWLP 375
Query: 344 VILTISLSILILLQKED 360
+L + +S +L + D
Sbjct: 376 TMLGLGVSGFLLYRSAD 392
>gi|206602448|gb|EDZ38929.1| Putative permease, YjgP/YjgQ family [Leptospirillum sp. Group II
'5-way CG']
Length = 362
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 61/364 (16%), Positives = 129/364 (35%), Gaps = 14/364 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K L + + VID E + ++ R +
Sbjct: 3 ILTRYIASELFKIFLLCFISLEAIYGVIDSVEKIKDFLSH-HAALPLIGQYFFYRSIEVS 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P L+ ++ L++ EL RA GIS+ + PF+ +L+ + ++ + +
Sbjct: 62 FRVLPMSGLLATLLTLGILSKNHELTAIRAAGISLVKATKPFLALGVLISLISIAMNYQL 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIP---WMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ + D G + W + N GA+ I +
Sbjct: 122 VPYAYQMTDYIKDVRIDQGKTGRVTFELNNVWFRHGNQD---IYGARTIRDGGSELDKVV 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GRIPIDK-NSTTLNIPIKMDG 236
+D + + DA + + ++ G + I+ + +
Sbjct: 179 LYHLDSTFHLSWQIDAKTLRYHQGLWSFRDGRLTRFLPDGSLKIESFQKMDTTLTRRPVD 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F + S+ E+ + ++ KS++ + E +I P+ M L+A +
Sbjct: 239 FTYEKTRMTHLSYPELDRYIALLEKSHL-PREKYEVTRDAMIAFPIAAFLMVLMAIPFGI 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV--ILTISLSILI 354
R + +TI ++ + GK G+LLP +A + +S+S+ +
Sbjct: 298 REGRQVGIAKGFGISLLLSMSYWTIYSLGLALGKGGVLLPWISAWFANMIVFFVSISLFL 357
Query: 355 LLQK 358
LL +
Sbjct: 358 LLNR 361
>gi|86609823|ref|YP_478585.1| YjgP/YjgQ family protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558365|gb|ABD03322.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 400
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 58/374 (15%), Positives = 125/374 (33%), Gaps = 25/374 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G++ RY L L+ + LV + ++ S+S + R P I
Sbjct: 26 GLMDRYVLSEMLLPFLFGVGAFTTLVMAVGSLFELVRLVVEAGLSLSAALQVFVLRAPGI 85
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I P L+ ++ + L+ +E+ R G+S+++L+ P +V S+L+ T L
Sbjct: 86 IVLTFPMSMLLATLLAYGRLSADNEITALRGCGVSLYRLMVPALVLSLLVTTLTFLFNEL 145
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS-----------NPQQDIFIGAKKILP 171
+ + + + + + + I + + + +Q +
Sbjct: 146 VVPVSNRQAATTLNRALNRDPDFRRENILYQEFGEILMPEPDGTFSRRQGLTRQFYARSF 205
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTL- 228
+ + + + A + + Y N T
Sbjct: 206 DGKQMRGIIVLDFSNEA-LNQILLAQRGRWDPQENLWVFEDGTNYIVSPDGTYSNIATFS 264
Query: 229 -------NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
P+++ + E+ R I+ ++ S R + IP
Sbjct: 265 RQELRLPRAPLELAQEIRSPEEMNIRELKHYIEVIASSGDLQRV--RRLQVSLNQKYAIP 322
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+A TLI + L R+ + + + F Y ++ I ++ G+ G L P AA
Sbjct: 323 FACLAFTLIGVPLGLRPQRTGSS-LGLGISVLIIFAFYVLLFITQALGQIGTLGPATAAW 381
Query: 342 IPVILTISLSILIL 355
+P + + + +L
Sbjct: 382 LPNFICAVVGLGLL 395
>gi|78486087|ref|YP_392012.1| permease YjgP/YjgQ [Thiomicrospira crunogena XCL-2]
gi|78364373|gb|ABB42338.1| YjgP/YjgQ family protein [Thiomicrospira crunogena XCL-2]
Length = 370
Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats.
Identities = 59/378 (15%), Positives = 146/378 (38%), Gaps = 29/378 (7%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M ++ RY + + TL L+ +I++ + ++ + +Y++++GA+ ++P
Sbjct: 1 MMNLIERYLGRVLVSHTLLVLMVLLIILGFSEFMIQIGKVSD--DYTVAKGAMYTVLKLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +I P L+ ++ +L +EL I R G SI ++ + + +L + ++
Sbjct: 59 VYGYEIFPVALLIGTLIGLGSLANHAELTILRVTGWSIRRIFFAVMKSAFILWVCAAVIG 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A + E + + S WM+ + +I +++ + + D T
Sbjct: 119 EWVAPASESYAKKMRGEALHKNFSIGSTDDFWMR----DGERYIHVGRVISD-TQFYDVT 173
Query: 181 SITIDKKNKIIHRKDADLAII--YNDKVKL----KKVVEYQ--YGRIPIDKNSTTLN--- 229
++ + ++ + A+ A + L +KV+++Q P K L
Sbjct: 174 IYSL-EDGQLSEQVHANTARYSEKEGQWVLYSLNRKVLDWQKMPALSPDRKTWKKLQFKQ 232
Query: 230 ---------IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+P+ Q + ++ +SF + N + F+ + +
Sbjct: 233 YDEVEGAVDLPVSPTLLQTLHVETRYMGITDLFSYISFLEE-NGLDAEAYKLAFWRKLAM 291
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
P +++ M + + R + GI G + + I + L + A
Sbjct: 292 PFVILGMIALVFPLIFGSQRQVSIGQRIFVGIMIGMSFHLLNQIFGNLSVVYQLPAIMGA 351
Query: 341 LIPVILTISLSILILLQK 358
+P I+ +S + L++ +
Sbjct: 352 FLPSIVLMSAAFLLMRRL 369
>gi|159028498|emb|CAO87305.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 389
Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats.
Identities = 68/375 (18%), Positives = 138/375 (36%), Gaps = 25/375 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
IL RY F L L+ + L V + L ++ ++ E + + ++P
Sbjct: 16 FTILDRYIFVELLLPFLFGMGLFTSLGVAIGTLFDLVRRITE-SGLPFTLALKILLLKMP 74
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ + L SEL+ ++IGIS+++L+ P +V S+++ T +
Sbjct: 75 EFIVLAFPMSILLAALMAYSRLASDSELIAFKSIGISVYRLIIPAIVLSLIVTGLTYIFN 134
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQ-KSDIIPWMQIS------NPQQDIFIG----AKKI 169
+ +A + + + K D I + + + + A++
Sbjct: 135 DYVAPAASYEANATMTKALRPNRKSFIEDNIIYPEYGKVRPPDGGEAQTVLRRLFYAERF 194
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI--------PI 221
+ + T + N+II + A I + Y
Sbjct: 195 NGQEMLGLTILDRTQPEVNQIITSETA-SWNIEKNIWDFYNGTIYLIDPNGSYRNIVRFQ 253
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
+ P+ + + + R E ++ + S N + + Q I +P
Sbjct: 254 HQQLALPRTPLDLAFRGRDGSEMTLRQAREYLEILQLSG--NPTKTRKLQVQIEQKISLP 311
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ + +I A++ L SN+ I F Y + + S G G+L P+ AA
Sbjct: 312 FVCLVFGMIGAALGLRPQNSNK-ATSFGICIVLIFSYYLLSFVTSSLGIGGVLTPLMAAW 370
Query: 342 IPVILTISLSILILL 356
+P IL ++ ++LL
Sbjct: 371 LPNILGLTAGGILLL 385
>gi|284051460|ref|ZP_06381670.1| permease YjgP/YjgQ [Arthrospira platensis str. Paraca]
gi|291568812|dbj|BAI91084.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 392
Score = 168 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 54/374 (14%), Positives = 129/374 (34%), Gaps = 25/374 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + + ++ + + + + E+ ++ E +S + ++P
Sbjct: 21 VLDRYIIQELIPPFIFGVGLFTSVAVTVGTVFELVRRVAE-SGLPVSVAFQVFLLKMPDF 79
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P ++ ++V+ L+ SEL+ R+ GIS+++L+ P ++ S ++ T
Sbjct: 80 MVLAFPMSMILTTLMVYGRLSSDSELIAIRSCGISLYRLVIPAIIFSFVVTGMTFAFNEI 139
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWM-------QISNPQQDIFIGAKKILPE--N 173
I + +Q+ + S + ++ + E +
Sbjct: 140 IVPAANFQATMTLQKALNEDALNISSTNIFFPEYERVSVEGTNRRVNVLRRLFYAEEFAD 199
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTL--- 228
T + + I + AI + Y +N
Sbjct: 200 GKMSGVTILDRSRAG-ITQIISSRTAIWNPQESTWDFYNGTVYIVDPDGSYRNIARFDHK 258
Query: 229 -----NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+P+ + + + E ++ M S + + + +P +
Sbjct: 259 QLHLSRVPLDLASQDRDYGEMNIAQTKEYLELMKLSGDQAKI--LKTKVRIQQKYALPFV 316
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
V L+ +S+ R+N+ + F Y + I + G+ GI+ P AA +P
Sbjct: 317 CVVFGLLGSSLGSRPGRTNR-ATSFGISVMIIFAYYLLSFITGAIGQKGIISPFMAAWLP 375
Query: 344 VILTISLSILILLQ 357
+L + +S +L +
Sbjct: 376 TMLGLGVSGFLLYR 389
>gi|50083533|ref|YP_045043.1| hypothetical protein ACIAD0255 [Acinetobacter sp. ADP1]
gi|49529509|emb|CAG67221.1| conserved hypothetical protein; putative permease [Acinetobacter
sp. ADP1]
Length = 356
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 50/361 (13%), Positives = 131/361 (36%), Gaps = 20/361 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVID--LNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
R K+ KTT +LG I++ ++ + +YS + + P +
Sbjct: 5 RIVAKHVTKTTALAMLGTTIVLVILQVLFTYLGELSNLKADYSAWQAFLYVLWGAPRYLY 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+I+P L+ I+ L SEL++ R++GIS+W+++ + +++L + + + +
Sbjct: 65 EILPISALIGAILGLGTLASNSELIVMRSVGISLWRIVGWVIRSALVLVLLSFALSEWVV 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + W + + FI + + +
Sbjct: 125 PYTNERANSV--KSHQSVAALGEVRGYWSR----EGQRFIYVDYANSQGQ-LKRIQVVDF 177
Query: 185 DKKNKIIHRKDADLAII-YNDKVKLKK----VVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
D ++ +A+ + + L ++ Q + + ++ ++
Sbjct: 178 DDNYRLKSVTNAEQGQFVKDGQWLLNHSQQMAIQGQGDAVLANAAKQPFSLALQPKYVHM 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ SF +++ M++ + + + F+ + P L+ + L+A S
Sbjct: 238 VTIDPEDLSFSQLVSFMNYMREYSQVPKT-YQLAFWKKVASPFALITLVLVACSFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL--IPVILTISLSILILLQ 357
R + +F G Y + G + ++ + A + I+ + ++ LL
Sbjct: 297 RQQSMGFRLVIALFIGLGFYYLQDF---LGYASLVYNPSPAWFVLGPIVLMFVAGSYLLY 353
Query: 358 K 358
+
Sbjct: 354 R 354
>gi|187922983|ref|YP_001894625.1| permease YjgP/YjgQ family protein [Burkholderia phytofirmans PsJN]
gi|296162275|ref|ZP_06845069.1| permease YjgP/YjgQ family protein [Burkholderia sp. Ch1-1]
gi|187714177|gb|ACD15401.1| permease YjgP/YjgQ family protein [Burkholderia phytofirmans PsJN]
gi|295887429|gb|EFG67253.1| permease YjgP/YjgQ family protein [Burkholderia sp. Ch1-1]
Length = 382
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 64/377 (16%), Positives = 125/377 (33%), Gaps = 28/377 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I RYF + T ++ L L F DL N +G NY + A + P
Sbjct: 3 IYERYFARQIYLTFIFILFAFSGLFFFFDLINELNSVGH-GNYKFQYAVLRVALQTPSRF 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IIP L+ I VF + SE I R G++ Q L + I L + T L+ +
Sbjct: 62 YEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVLLTYLIGEVV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWE 177
+++ + + + + W+ + Q F+ ++ P+ I
Sbjct: 122 GPYTDQLSERVRLEALGSSVSSNFESGVWVKDTLTARADGEQVTRFVNVGELKPDATI-S 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP---------------- 220
+ D K ++ + + A +L V + Q +P
Sbjct: 181 NVRIYEFDSKFRLSNVRTAKSGKYQPPGHWQLTGVTDTQLIDVPPPPGTPADALNPVYRA 240
Query: 221 --IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+ +L + S + + + + + N R E + +
Sbjct: 241 KEVAVPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTE-NHQDTQRYEIALWRKL 299
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+ P + M +++ + +R+ + V GI G T+ G
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPL 359
Query: 339 AALIPVILTISLSILIL 355
A P ++ + L ++ L
Sbjct: 360 TAATPGLVYLVLGLVGL 376
>gi|226951740|ref|ZP_03822204.1| permease YjgP/YjgQ-like protein [Acinetobacter sp. ATCC 27244]
gi|294648982|ref|ZP_06726430.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
gi|226837530|gb|EEH69913.1| permease YjgP/YjgQ-like protein [Acinetobacter sp. ATCC 27244]
gi|292825117|gb|EFF83872.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
Length = 356
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 62/361 (17%), Positives = 141/361 (39%), Gaps = 21/361 (5%)
Query: 7 RYFFKYYLKTTLYFLLGA-MILVFVIDLNEIQNQMGEL-PNYSISRGAVLAATRVPLIIQ 64
R K+ KTT+ +LG ++L F+ L ++G L PNY+ + + P +
Sbjct: 5 RIVAKHVTKTTVLAMLGTTLVLSFLQVLFTYLGELGSLKPNYNAWQAFLYVLWGAPRYLY 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+I+P L+ +++ L SEL++ R++GIS+W+++ + ++LL + + + +
Sbjct: 65 EILPVAALIGSVLGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFTLSEWVI 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + + W + + F + + SI
Sbjct: 125 PYTNEKAQSI--KKQRSVAALGEVKGYWSR----EGQRFTYIDYANSQGQ-LRNIQSIDF 177
Query: 185 DKKNKIIHRKDADLAII-YNDKVKLKKVVEY----QYGRIPIDKNSTTLNIPIKMDGFQK 239
D+ ++ A+ + + L++ + Q I D + L + ++
Sbjct: 178 DENYRLQSFVTAEQGNFVKDGQWTLEQSHQIDLLPQGNAIKTDHANQALALALQPKYVHM 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S ++I M + + + E F+ + P L+A+ LIA S
Sbjct: 238 VTIDPEDLSPTQLISFMRYMEEYSQVPKT-YELAFWQKVASPFALIALVLIACSFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL---IPVILTISLSILILL 356
R + +F+G + + G + ++ + A +PV+L + +L
Sbjct: 297 RQQSMGFRLVIALFTGLGFFYLQDF---MGYASLVYAPSPAWFVLLPVVLMFMIGSYLLY 353
Query: 357 Q 357
+
Sbjct: 354 R 354
>gi|121605071|ref|YP_982400.1| permease [Polaromonas naphthalenivorans CJ2]
gi|120594040|gb|ABM37479.1| permease YjgP/YjgQ family protein [Polaromonas naphthalenivorans
CJ2]
Length = 379
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 59/372 (15%), Positives = 133/372 (35%), Gaps = 32/372 (8%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN-----YSISRGAVLAATRVPL 61
R + L + +G + L F DL + +G+ Y I + A +P
Sbjct: 6 RLIYGEVLGSIALVAMGFLALFFFFDLVDELQYLGKNNGAGDSIYQIRHALLYVALLIPN 65
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +++P L+ +I V L ++SE I R G+ W+ L + + LV +
Sbjct: 66 HLYELLPISVLIGSIFVMSRLAQSSEYTILRTSGLGPWRALKLLLWLGAFFVALSFLVGD 125
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA + E+ + ++++ W++ + + ++ P N
Sbjct: 126 YIAPASERAAQLMKARYQN--KITVGQTGAWLKEKQVSSNFIVNVSELSPNN-EMHGVRI 182
Query: 182 ITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPID--------------KNST 226
+ + I+ +A +A N +L+ ++ +
Sbjct: 183 YEFNHQGLIVSTTEAPVAAFSLNTAWQLRNATRTEFDVTTSAGGVNAPAQQAKVKRTDVA 242
Query: 227 TLNIPIKMDGFQK-----FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
+ P ++ ++ A+ + I+ + + +++ R E +F+ + P
Sbjct: 243 SYRWPTEISTEMVSVALLRPDRMATLDLFNYIRHLEANGQTS----QRYEIEFWKKVFYP 298
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
L + M ++A + RS V G+ G + + + G P AA
Sbjct: 299 LSCLVMVMLALPFAYLHFRSGSITSYVFAGVMIGISFFLLNNVFGYIGNLRNWQPWLAAA 358
Query: 342 IPVILTISLSIL 353
P +L +++S+
Sbjct: 359 TPGLLYMAISMA 370
>gi|91782194|ref|YP_557400.1| membrane protein, YjgP/YjgQ like [Burkholderia xenovorans LB400]
gi|91686148|gb|ABE29348.1| membrane protein, YjgP/YjgQ like protein [Burkholderia xenovorans
LB400]
Length = 382
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 64/377 (16%), Positives = 125/377 (33%), Gaps = 28/377 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I RYF + T ++ L L F DL N +G NY + A + P
Sbjct: 3 IYERYFARQIYLTFIFILFAFSGLFFFFDLINELNSVGH-GNYKFQYAVLRVALQTPSRF 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IIP L+ I VF + SE I R G++ Q L + I L + T L+ +
Sbjct: 62 YEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQSLRSLLKIGIPLVLLTYLIGEVV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWE 177
+++ + + + + W+ + Q F+ ++ P+ I
Sbjct: 122 GPYTDQLSERVRLEALGSSVSSNFESGVWVKDTLTARADGEQVTRFVNVGELKPDATI-S 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP---------------- 220
+ D K ++ + + A +L V + Q +P
Sbjct: 181 NVRIYEFDSKFRLSNVRTAKSGKYQPPGHWQLTGVTDTQLIDVPPPPGTPADALNPVYRA 240
Query: 221 --IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+ +L + S + + + + + N R E + +
Sbjct: 241 KEVAVPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTE-NHQDTQRYEIALWRKL 299
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+ P + M +++ + +R+ + V GI G T+ G
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPL 359
Query: 339 AALIPVILTISLSILIL 355
A P ++ + L ++ L
Sbjct: 360 TAATPGLVYLVLGLVGL 376
>gi|282897128|ref|ZP_06305130.1| permease YjgP/YjgQ [Raphidiopsis brookii D9]
gi|281197780|gb|EFA72674.1| permease YjgP/YjgQ [Raphidiopsis brookii D9]
Length = 391
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 60/370 (16%), Positives = 136/370 (36%), Gaps = 18/370 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGELPNYSISRGAVLAATRVP 60
I+ RY L L+ + +V ID L E+ ++ E I+ + ++P
Sbjct: 18 FSIMDRYLAMQLLPIFLFGVGAFTSVVLAIDSLFELLRKVVE-SGLPINIALKVFVLKLP 76
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P TL+ ++ + L+ SEL+ R G+S+++++ V+ S L+ T +
Sbjct: 77 YVMVYSFPMSTLLATLMTYSKLSSDSELIALRGCGVSVYRMVLTAVLLSGLVTGMTYVFN 136
Query: 121 NPIATSGEKIGIDLIQQWKDN---GDKQKSDIIPWMQI--SNPQQDIFIGAKKILP---E 172
I+ + ++Q + KQ++ P + + + A+ +
Sbjct: 137 EYISPAANYEASITLEQALKSDQPSFKQENIYYPEYREEKTKDGGTSRLLARLFYADEFD 196
Query: 173 NHIWEDFTSITIDKKN-KIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNST 226
+ T I K I ++ Y Y R +
Sbjct: 197 GKKMKGLTIIDRSKAGVNQIVVSESAQWNAYKQVWDFYNGTIYLVAPDRSYRNILRFEHQ 256
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN-YRAETQFYFLIVIPLMLV 285
L +P K S + + + ++++ + + E + I P + +
Sbjct: 257 QLKLPSTPLIVAKNSRDYEEMNIAQSLQQLEIEKLAGNPQRIKKLEVRIQQKIAFPFICI 316
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
L+ +++ R+ + I F+ Y ++++ + ++ IL P A +P +
Sbjct: 317 IFGLVGSAMGTIPQRTGR-GRSFGVSIIVIFIYYLLLSVCGALAQAEILSPFVGAWLPNL 375
Query: 346 LTISLSILIL 355
+ + I+IL
Sbjct: 376 CGLGMGIVIL 385
>gi|239815706|ref|YP_002944616.1| permease YjgP/YjgQ family protein [Variovorax paradoxus S110]
gi|239802283|gb|ACS19350.1| permease YjgP/YjgQ family protein [Variovorax paradoxus S110]
Length = 369
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 58/361 (16%), Positives = 126/361 (34%), Gaps = 20/361 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN--YSISRGAVLAATRVPLIIQ 64
R + LK + LG + L F D + +G + Y ++ + +P +
Sbjct: 6 RLIYVEALKAVAFVTLGFLSLFFFFDFVDELQSIGRPESLAYGPAQALIYVTLLIPSHLY 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ I V L ++SE I R G+ W+ L ++ + T + + IA
Sbjct: 66 ELLPITVLIGCIFVMARLAQSSEYTILRTSGLGPWRALRTLLLLGVGFVFLTFAIGDYIA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ E+ G L +++ + W++ + I + ++
Sbjct: 126 PASERTGQLLKSRYQ-GSYSLVGNTGAWLKEKRENVSYAVNVLSIARDGS-LKNARIFEF 183
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKV-------VEYQYGRIPIDKNSTTLNIPIKMDGF 237
D + + A A I++D +L V + L+ P +
Sbjct: 184 DANGYVRKQLVASSARIFDDHWQLSDVELQDYETRISAEKARIVTTKVPQLDWPTTLTSE 243
Query: 238 QK-----FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
++ + ++ I+ + + ++ R E QF+ + PL + M ++A
Sbjct: 244 MVSVALLRPDRMGTLDLFDYIRHLEANGQT----AQRYEIQFWRKVFYPLSCLVMVVLAL 299
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ R V G+ G + + + G P A P ++ +S+
Sbjct: 300 PFAYLHFRQAGITTYVFGGVMIGISFFLLNNVFGYLGNLSNWSPWLTAAAPGLIYSVMSL 359
Query: 353 L 353
Sbjct: 360 A 360
>gi|124514757|gb|EAY56269.1| putative permease, YjgP/YjgQ family [Leptospirillum rubarum]
Length = 362
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 61/364 (16%), Positives = 130/364 (35%), Gaps = 14/364 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K L + + VID E + ++ R +
Sbjct: 3 ILTRYIASELFKIFLLCFISLEAIYGVIDSVEKIKDFLSH-HAALPLIGQYFFYRSIEVS 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV---I 120
+++P L+ ++ L++ EL RA GIS+ + PF+ +L+ + ++ + +
Sbjct: 62 FRVLPMSGLLATLLTLGILSKNHELTAIRAAGISLVKATKPFLALGVLISLISIAMNYQL 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
P A D+ +G+ W + N GA+ I + +
Sbjct: 122 VPYAYQMTDYIKDVRIDQGKSGNVTFELNNVWFRHGNQD---IYGARTIRDGGNELDKVV 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKV--VEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+D+ + + DA + + + ++ ++ +
Sbjct: 179 LYHLDRTFHLSWQVDAKTLRYHQGLWSFQDGHLTRFLPDGSLKIESFQKMDTTLTRRPVD 238
Query: 239 KFSEQ--FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E+ S+ E+ + ++ KS++ + E +I P+ M L+A +
Sbjct: 239 FTYEKTRMTHLSYPELDRYIALLEKSHL-PREKYEVTRDAMIAFPIAAFLMVLMAIPFGI 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV--ILTISLSILI 354
R + +TI ++ + GK G+LLP +A + +S+S+ +
Sbjct: 298 REGRQVGIAKGFGISLLLSMSYWTIYSLGLALGKGGVLLPWISAWFANMIVFFVSISLFL 357
Query: 355 LLQK 358
LL +
Sbjct: 358 LLNR 361
>gi|116624897|ref|YP_827053.1| permease YjgP/YjgQ family protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116228059|gb|ABJ86768.1| permease YjgP/YjgQ family protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 777
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 64/368 (17%), Positives = 130/368 (35%), Gaps = 13/368 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+P ++ Y ++ + L + L + + E+ N M N S+ P
Sbjct: 411 LPQLVDTYILSNFVTYLVLMLASFVSLELIRNFFELINDMLRN-NISLKIMFKYLFFLSP 469
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+I Q++P LV + F +++ +E+ +A G+S+++L P +VGS+LL
Sbjct: 470 QLIYQMLPVSILVAVLAAFGVMSKQNEITAFKACGVSLFRLAAPILVGSVLLSGGLFAFD 529
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQ-KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ +I L Q K + W + + E +
Sbjct: 530 FYYVANANRIQDALRDQIKGRATQTYLRPDRTWKMGYDSLRIFNYRYFDNSGEESTMSEA 589
Query: 180 TSITIDKK-NKIIHRKDADLAIIYN--DKVKLKKVVEYQY-----GRIPIDKNSTTLNIP 231
+ ++ K ++ + A A + +Y + +T +
Sbjct: 590 SVFELEPKTFRLQRQIFARQAHWNASLKTWVFEDGWTCEYKGPNCDAYARFQATTFRELT 649
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
D F K + + +F ++ + +S + + +FY +PL + M LIA
Sbjct: 650 EPPDYFLKEARKDEQMNFLQLDSYIKDLTQSGFEGTSKLQVRFYRKFSLPLFALIMALIA 709
Query: 292 ASVS-LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
L SR I ++ GI + + + G +L P AA P ++
Sbjct: 710 VPFGFLVGSRGAMTGIGISIGIAV--AYIALGQLFEKVGDVNLLSPATAAWAPDVVFALA 767
Query: 351 SILILLQK 358
+ L+
Sbjct: 768 GTYLFLRM 775
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 53/372 (14%), Positives = 130/372 (34%), Gaps = 21/372 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY F+ L + + L A ++F+ ++ I + + + + + L A +P ++
Sbjct: 3 LLGRYIFREILTSAVLGTLLASFILFLRSVDPIFELLVKSSSANTNLVLQLFALAIPNVL 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IPF LV ++ L E++ RA G+S +++ P ++ + L G +
Sbjct: 63 PFTIPFGVLVGILIGLGRLASDGEIIAMRAAGVSSRKVIFPVLLFAALGGGVAAFATLRL 122
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN-HIWEDFTSI 182
D++ Q + Q + +P + + ++ P N +W++
Sbjct: 123 TPYSIHKYTDIVNQLEAT---QLTADVPSRVFVENFPNTILYVGEVKPGNPSVWKNVFVA 179
Query: 183 TIDKKNK------------IIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ K +I + +A+ + N++++L + Y + D +S
Sbjct: 180 DVAPPEKRSAGMRDKAMGPMITVAEQAIAVPDVTNNRLQLT-LRNYSTHEMSKDLSSRDT 238
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
P + + + + + + +P+ + +
Sbjct: 239 IAPTGQQALTASPPSQTPLRSIGMGTRQLLAYPRGKPDWVEYQIELHKRFALPVACIMLA 298
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFM-LYTIITIMKSFGKSGILLPVAAALIPVILT 347
++ + + +R IF F Y + + L A +P +
Sbjct: 299 MVGIPLGI-ATRKGGRSAGYVNAIFVAFFCYYMGFVSLIGLARQKTLPVPVALWLPNAVF 357
Query: 348 ISLSILILLQKE 359
+ ++ L + E
Sbjct: 358 FVVGVIFLARLE 369
>gi|254428344|ref|ZP_05042051.1| putative permease, YjgP/YjgQ family [Alcanivorax sp. DG881]
gi|196194513|gb|EDX89472.1| putative permease, YjgP/YjgQ family [Alcanivorax sp. DG881]
Length = 353
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 58/357 (16%), Positives = 124/357 (34%), Gaps = 11/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RYF++ + TL L + L + + NY + T P
Sbjct: 3 LLKRYFWRAVMIPTLAILFIIVGLDCLFGFVYELEFL--RGNYQVMEALQFILTTTPRRF 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P L+ ++ L + EL + RA G+S ++ + ++L I ++ + +
Sbjct: 61 YEYMPMAILLGTLIGLGLLANSGELSVIRAAGVSTLKVSWLVLRPVLVLIILSIPLGEYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E++ + G+ +S W + + FI + P + T
Sbjct: 121 TPYSEQVAQSNRSMAEGGGEALRSKYGYWHR----EGPEFIHINAVQPNG-VLHGLTRYR 175
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKV---VEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K+ + D AI D L+ + + K+ +
Sbjct: 176 FSDNQKLTETQYVDRAIYQGDFWSLEGIHGTRLFDDHAETYQKDQGEWQTELTPQLLSIV 235
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
Q + + ++++ + + + F+ + +PL + M LIA S R
Sbjct: 236 VLQPDNLALVKLLEYTRYLKRQGL-ETADYMLSFWQKLFMPLATIGMVLIAISFVFGPLR 294
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + GI +G + + P+ AA++P L + L + +L +
Sbjct: 295 EVTMGLRLTAGIVAGLIFHYGQQFFGQLSLVFHTDPLLAAMLPPSLCLVLGVWLLQR 351
>gi|187479476|ref|YP_787501.1| permease [Bordetella avium 197N]
gi|115424063|emb|CAJ50616.1| putative permease [Bordetella avium 197N]
Length = 389
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 61/371 (16%), Positives = 127/371 (34%), Gaps = 22/371 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + ++ LL + L L + + +GE +S+ + A +P + +
Sbjct: 6 RYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGEK--FSMLALLYMQALALPTRLYDL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I+ L + +ELVI R G+S +L+ V +I + I L+ +
Sbjct: 64 LPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLMRMLWVVTIPVMIGATLLSEFVTPI 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI-FIGAKKILPENHIWEDFTSITID 185
E + ++ + + W + I + +L + + D T +
Sbjct: 124 AEIKSGEADLTFRGKAGGGRLNSGYWFKEPTRDGGTRIINIQTLLADGQV-RDVTLYELK 182
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-----------------NSTTL 228
++ A + + + L VV+ + S L
Sbjct: 183 PDLELESLSKAAKGVFTDGDLLLSDVVQTRIAPEAAQALANAKQPPKPPAEVETLASLRL 242
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ + + S +I + + + + + R + V P L+ M
Sbjct: 243 DTTLSPERLLARVLTPERMSAATLIDYIDYLHHNQL-QADRQVVALWRKFVYPFTLLVMI 301
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
IAA ++ +R V GI G + + + + G P AL P +
Sbjct: 302 TIAAPIAFMQTRRGGVGAKVFIGILMGVAFFMVNQLSLNVGMLSRWPPWLTALGPNAAAM 361
Query: 349 SLSILILLQKE 359
+++ L+ E
Sbjct: 362 IVALGALVMME 372
>gi|33603373|ref|NP_890933.1| hypothetical protein BB4399 [Bordetella bronchiseptica RB50]
gi|33577497|emb|CAE34762.1| putative membrane protein [Bordetella bronchiseptica RB50]
Length = 422
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 63/367 (17%), Positives = 125/367 (34%), Gaps = 22/367 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + ++ LL + L L + + +G+ +S+ + A +P + +
Sbjct: 36 RYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGDK--FSMLALFYMQALALPTRLYDL 93
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I+ L + +ELVI R G+S +LL V +I L I L+ + +
Sbjct: 94 LPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLGMLWVITIPLMIGATLLSEFVTPA 153
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-QDIFIGAKKILPENHIWEDFTSITID 185
E + ++ + + W + PQ I K +L + + +D T
Sbjct: 154 AEIKSGEADLTFRGKAGGGRLNSGYWFKEPTPQNGTRIINIKTLLADGQV-KDVTLYEFR 212
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP-----------------IDKNSTTL 228
++ A + L V E + L
Sbjct: 213 SDLEMTALWTAPNGRFSRGDLVLTDVSETRIDEHAPSALADAKQPKEPPARVTKVPELKL 272
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ + + S ++ + + + + ++ R + +V P L+ M
Sbjct: 273 DTTLSPERLLARVLTPERMSALTLVDYIEYLRHNQLQYD-RQVVALWRKLVYPFTLLVMI 331
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
IAA + +R V GI G + + + + G P AL P + +
Sbjct: 332 TIAAPIGFMQTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLSRWPPWITALGPNLGAL 391
Query: 349 SLSILIL 355
L+ L
Sbjct: 392 LLAFGAL 398
>gi|291287414|ref|YP_003504230.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
12809]
gi|290884574|gb|ADD68274.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
12809]
Length = 361
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 70/360 (19%), Positives = 152/360 (42%), Gaps = 12/360 (3%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+Y K +++ T+ + I+ + + + + E N S V + P ++
Sbjct: 5 NKYIIKLFVQYTVIVQVFVAIITLIANTFQHTKMLSEY-NISFMTLIVYDLMKTPYLLYT 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI---FTVLVINP 122
+P ++ ++V L + +EL+ ++G I L PF+V I L + F+ VINP
Sbjct: 64 TMPMTIVISTMLVMVTLLKNNELIAYVSLGGKIRNLAYPFIVSGIFLSVLLYFSADVINP 123
Query: 123 -IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I E+ + I+ N + +D+ W++ S+ FI + P T
Sbjct: 124 KIMLERERFAYENIKNRTFNVSGKLTDM--WLKESDS---SFININLMDPTEKKIIGITE 178
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ ++ + D A Y K K + +P+ +S I + + S
Sbjct: 179 YHLNNNFQVDYIVTYDSAEYYEGKWIEKNKKVFAMDPVPVMTDSAEEVIQERELFDELTS 238
Query: 242 EQFASRSFYEI--IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S F + +++ + K + + Q Y L ++ + L+ + + F+
Sbjct: 239 LPVLSPKFLSLKEVRRTAEIMKKQDINTAKYYLQLYKSYAHALSVIVIILVIFPLCIGFN 298
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R++ + + +F+GF + ++ +S GK+G+ P+AA IP+ L++ ++ ++E
Sbjct: 299 RNHSYIAVASKSLFTGFAYWMLMASFQSLGKTGLFSPLAANFIPIGAFFILALALIYRRE 358
>gi|33598433|ref|NP_886076.1| hypothetical protein BPP3926 [Bordetella parapertussis 12822]
gi|33574562|emb|CAE39209.1| putative membrane protein [Bordetella parapertussis]
Length = 422
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 62/367 (16%), Positives = 125/367 (34%), Gaps = 22/367 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + ++ LL + L L + + +G+ +S+ + A +P + +
Sbjct: 36 RYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGDK--FSMLALFYMQALALPTRLYDL 93
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I+ L + +ELVI R G+S +LL V +I L I L+ + +
Sbjct: 94 LPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLGMLWVITIPLMIGATLLSEFVTPA 153
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-QDIFIGAKKILPENHIWEDFTSITID 185
E + ++ + + W + PQ I K +L + + +D T
Sbjct: 154 AEIKSGEADLTFRGKAGGGRLNSGYWFKEPTPQNGTRIINIKTLLADGQV-KDVTLYEFR 212
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP-----------------IDKNSTTL 228
++ A + L V E + L
Sbjct: 213 SDLEMTALWTAPNGRFSRGDLVLTDVSETRIDEHAPSALADAKQPKELPARVTKVPELKL 272
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ + + S ++ + + + + ++ R + +V P L+ M
Sbjct: 273 DTTLSPERLLARVLTPERMSALTLVDYIEYLRHNQLQYD-RQVVALWRKLVYPFTLLVMI 331
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+AA + +R V GI G + + + + G P AL P + +
Sbjct: 332 TVAAPIGFMQTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLSRWPPWITALGPNLGAL 391
Query: 349 SLSILIL 355
L+ L
Sbjct: 392 LLAFGAL 398
>gi|113868947|ref|YP_727436.1| permease [Ralstonia eutropha H16]
gi|113527723|emb|CAJ94068.1| predicted permease [Ralstonia eutropha H16]
Length = 388
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 62/381 (16%), Positives = 125/381 (32%), Gaps = 39/381 (10%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYF + + L + L D+ + Y+ + P + ++
Sbjct: 9 RYFGRLVYGVFAFILFAVLSLFVFFDMLNELENVNN--QYTSLVALFHVLLQAPTRVYEV 66
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I VF L SE I R G++ Q L ++ L I T + IA
Sbjct: 67 LPIAVLISAIYVFSQLASQSEYTIFRVAGLNTRQALFSLFKLAVPLAIVTFIFGEFIAPR 126
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI-------FIGAKKILPENHIWEDF 179
E+ + + W++ + F+ + P+ I
Sbjct: 127 AEQYAQKIKLEAIGATVSSGFRSGVWVKDRDKDAATGGGEITRFVNVAGLRPDQTI-TGI 185
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNST------------ 226
T D + ++ + A + +L+ V E ++ +
Sbjct: 186 TMYEFDPQYRLRMIRVAQEGRYQGGQLWELQGVNETRFIELASPAQGAKPARDSLAPDFR 245
Query: 227 ------------TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF 274
+ P + E+ ++ + I+ + + + R E F
Sbjct: 246 AEQVKFPRVTMHSELTPQILSVLLVTPERMSTLDLFRYIRHLRDNKQ----DTQRYEIAF 301
Query: 275 YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
+ ++ PL L M +A + +R+ + V GI G + T+ G
Sbjct: 302 WKKVIYPLTLFVMMALALPFAYLHARAGAVGVKVFGGIMLGLSFHLSNTLFSHVGLLHTW 361
Query: 335 LPVAAALIPVILTISLSILIL 355
P+ +AL+P L + +++L L
Sbjct: 362 PPIISALVPGTLYLMVALLAL 382
>gi|262370180|ref|ZP_06063507.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|262315219|gb|EEY96259.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 356
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 50/361 (13%), Positives = 128/361 (35%), Gaps = 21/361 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVID--LNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
R K+ KTT +LGA ++ V+ + Y P +
Sbjct: 5 RIVAKHVTKTTAMAMLGATAILSVLQILFTYLGELGSLKEGYGAWDALRYVLWGAPQYLY 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+I+P L+ +++ L SEL++ R++G+S+W+++ + +++L + + + +
Sbjct: 65 EILPIAALIGSVLGLGTLASNSELIVMRSVGVSLWRIVGWVIRSALILVVLSFALSEWVI 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + W + + FI + ++ +
Sbjct: 125 PYTNEQAKGV--KSHRTAAELGEVRGYWTR----EGQRFIYVDYANSQGQ-LKNVQVVDF 177
Query: 185 DKKNKIIHRKDADLAII-YNDKVKLKKVVEYQY----GRIPIDKNSTTLNIPIKMDGFQK 239
D ++ +A+ + + L+ + T L + ++
Sbjct: 178 DNNARLKGVLNAEQGQFVQDGRWILENTAQVDLLPTGNATAQKAAETPLALALQPKYVHM 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S +++ MS+ ++ + + F+ + P L+A+ LIA S
Sbjct: 238 VTIDPEDLSPSQLVSFMSYMHEYSQVPKT-YQLAFWQKVASPFALIALVLIACSFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL---IPVILTISLSILILL 356
R + +F+G + + G + ++ + A +P++L +L
Sbjct: 297 RQQSMGFRLVIALFTGLGFFYLQDF---LGYASLVYSPSPAWFVFVPILLMFVAGGYLLQ 353
Query: 357 Q 357
+
Sbjct: 354 R 354
>gi|325267812|ref|ZP_08134462.1| YjgP/YjgQ family permease [Kingella denitrificans ATCC 33394]
gi|324980693|gb|EGC16355.1| YjgP/YjgQ family permease [Kingella denitrificans ATCC 33394]
Length = 353
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 54/374 (14%), Positives = 136/374 (36%), Gaps = 41/374 (10%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY ++ T+ + L+ + + ++ ++ + NY+ + P
Sbjct: 2 KLLSRYL---IIRLTVMSAYALLALLALYNFIDLLSEKTGIGNYTFWHAVQFTLLQTPAR 58
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++P TL+ ++ L+ SEL + + G I + + V S + + TVL+
Sbjct: 59 AYLLMPLATLIGGLLALSQLSSNSELAVMKTSGWHISRFIGTIVQFSFIFAVITVLLGEW 118
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA ++ + +G + W++ D + +LP+ + D +
Sbjct: 119 IAPQLSSYADNMKSTAR-SGQLSSTRNGVWIKQP----DSMVYIGSMLPDKTLL-DISIW 172
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI------DKNSTTLNIPIKMDG 236
+ ++ A+ A++ + +L+ V + + ++ MD
Sbjct: 173 HYTPQFRLTEAIHAEKAVMRDQTWQLQNVQSSKITEERVIVQKQPARDWHMNTTNQLMDV 232
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
EQ + + + I + +N+ + ++ +V P+ + M L+A + +
Sbjct: 233 LLVKPEQMSFSALTQYIGYLKKNNQQ----TLAYDVAWWNKLVYPVATMVMALVALAFTP 288
Query: 297 EFSRSNQ-----------PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
R++ + G GF + + +A++P
Sbjct: 289 VSGRNHNLGLKLFGGIGLGLLFFFTGRLFGFS-----------AQLYGVPAFLSAVLPTA 337
Query: 346 LTISLSILILLQKE 359
L L++ ++ ++E
Sbjct: 338 LFACLAVFLIYRQE 351
>gi|33591556|ref|NP_879200.1| hypothetical protein BP0325 [Bordetella pertussis Tohama I]
gi|33571198|emb|CAE40702.1| putative membrane protein [Bordetella pertussis Tohama I]
gi|332380956|gb|AEE65803.1| hypothetical protein BPTD_0320 [Bordetella pertussis CS]
Length = 392
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 63/367 (17%), Positives = 125/367 (34%), Gaps = 22/367 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + ++ LL + L L + + +G+ +S+ + A +P + +
Sbjct: 6 RYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGDK--FSMLALFYMQALALPTRLYDL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I+ L + +ELVI R G+S +LL V +I L I L+ + +
Sbjct: 64 LPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLGMLWVITIPLMIGATLLSEFVTPA 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-QDIFIGAKKILPENHIWEDFTSITID 185
E + ++ + + W + PQ I K +L + + +D T
Sbjct: 124 AEIKSGEADLTFRGKTGGGRLNSGYWFKEPTPQNGTRIINIKTLLADGQV-KDVTLYEFR 182
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP-----------------IDKNSTTL 228
++ A + L V E + L
Sbjct: 183 SDLEMTALWTAPNGRFSRGDLVLTDVSETRIDEHAPSALADAKQPKEPPARVTKVPELKL 242
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ + + S ++ + + + + ++ R + +V P L+ M
Sbjct: 243 DTTLSPERLLARVLTPERMSALTLVDYIEYLRHNQLQYD-RQVVALWRKLVYPFTLLVMI 301
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
IAA + +R V GI G + + + + G P AL P + +
Sbjct: 302 TIAAPIGFMQTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLSRWPPWITALGPNLGAL 361
Query: 349 SLSILIL 355
L+ L
Sbjct: 362 LLAFGAL 368
>gi|282901534|ref|ZP_06309456.1| permease YjgP/YjgQ [Cylindrospermopsis raciborskii CS-505]
gi|281193577|gb|EFA68552.1| permease YjgP/YjgQ [Cylindrospermopsis raciborskii CS-505]
Length = 388
Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 59/370 (15%), Positives = 136/370 (36%), Gaps = 18/370 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGELPNYSISRGAVLAATRVP 60
I+ RY L L+ + +V ID L E+ ++ E I+ + ++P
Sbjct: 15 FSIMDRYLAMQLLPIFLFGVGAFTSVVLAIDSLFELLRKVVE-SGLPINIALKVFVLKLP 73
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P TL+ ++ + L+ SEL+ R G+S+++++ V+ S L+ T +
Sbjct: 74 YVMVYSFPMSTLLATLMTYSKLSSDSELIALRGCGVSVYRIVLTAVLLSGLVTGMTYIFN 133
Query: 121 NPIATSGEKIGIDLIQQWKDN---GDKQKSDIIPWMQI--SNPQQDIFIGAKKILP---E 172
I+ + +++ + KQ++ P + + + A+ +
Sbjct: 134 EYISPAANYEASVTLERALKSDQPSFKQQNIYYPEYREEKTKDGGSSRLLARLFYADEFD 193
Query: 173 NHIWEDFTSITIDKKN-KIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNST 226
+ T I + I ++ Y Y R +
Sbjct: 194 GKKMKGLTIIDRSQAGVNQIVVSESAQWNAYKQVWDFYNGTIYLVAPDRSYRNILRFEHQ 253
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN-YRAETQFYFLIVIPLMLV 285
L +P K S + + + ++++ + + E + I P + +
Sbjct: 254 QLQLPSTPLIVAKNSRDYEEMNIAQSLQQLEIEKLAGNPQRIKKLEVRIQQKIAFPFICI 313
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
L+ +++ R+ + I F+ Y ++++ + ++ IL P A +P +
Sbjct: 314 IFGLVGSAMGTIPQRTGR-GRSFGVSIIVIFIYYLLLSVCGALAQAEILSPFVGAWLPNL 372
Query: 346 LTISLSILIL 355
+ + ILIL
Sbjct: 373 CGLGMGILIL 382
>gi|119357818|ref|YP_912462.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
266]
gi|119355167|gb|ABL66038.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
266]
Length = 358
Score = 166 bits (422), Expect = 4e-39, Method: Composition-based stats.
Identities = 65/360 (18%), Positives = 141/360 (39%), Gaps = 16/360 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY F+ + + + + L +I + E ++ +L + + +P
Sbjct: 2 KLLDRYIFRQFAVSFFFASAAFIALFILISMVENLDEFIDL-GIGPGKITGYYLSSIPST 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ I+V L+ SEL ++ GIS+ QLL PFV+G ++ +L
Sbjct: 61 LMVTSPVAALLSAILVAGKLSAMSELSAIKSAGISLKQLLKPFVLGGTIICSINMLNSCW 120
Query: 123 I--ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ A + +KI + + + S++ + + ++L +
Sbjct: 121 LGPAAAADKIAFERTSFNRTQNLQANSNMHIL-----ESGNRIVSIGELLINQSKGLHIS 175
Query: 181 SITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDK----NSTTLNIPIKM 234
+ ++ R DA I + K LK+ + + TL + + +
Sbjct: 176 IEQFN-GTRLSTRMDAPEMIFDQNVHKWVLKETSSRSFTGNNEQYHLNPGNDTLGMAMSL 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+K + Q + E + +K+ RA+ + + I +P + LI +
Sbjct: 235 KSLRKLNVQPDEMNILEHYRYTREKDKAGFSGLDRAKVKLHAKIALPFASLISILIGVPL 294
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S R + + +F GF+ + + + G +G+L P AA +P +L + ++ ++
Sbjct: 295 STIRKRGGKAAE-FSITLFIGFLYLGLQKTIATIGYTGLLEPWIAAWLPNMLFLIVAGIL 353
>gi|83814343|ref|YP_445251.1| hypothetical protein SRU_1124 [Salinibacter ruber DSM 13855]
gi|83755737|gb|ABC43850.1| membrane protein, putative [Salinibacter ruber DSM 13855]
Length = 410
Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 51/355 (14%), Positives = 125/355 (35%), Gaps = 10/355 (2%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R+ K LK + F+ ++ V+ E + + V VP II+
Sbjct: 55 RHIIKRLLKGFVLFVGALLVFFIVLHWVEYSDDFLDGGATIWEVFTVFYPNYVPEIIRLT 114
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P + I + L + +LV + G+S++QL+ P++ +L+ +F +
Sbjct: 115 SPLALFLSCIYLTGTLAQELQLVALQTSGVSLYQLMRPYLGVGLLVTVFMFGFNGWVVPK 174
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ + ++ K + + + + + +
Sbjct: 175 TNEVVVRYENEYLPGNQKSVQTSEIHRR---NGPNSILSVGYYDADRERAHTVSLQQLAG 231
Query: 187 KNKIIHRKDADLAIIYN--DKVKLKKVVEYQY--GRIPIDKNSTTLNIPIK--MDGFQKF 240
++ R DA+ + + +L V + G + +L+ ++ +
Sbjct: 232 DARLARRVDANRMEWDDSLEVWRLDDVTRRTFVKGETQRKRTIASLDTTLQVYPRDLARS 291
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
A+ + + ++ +S + R +Y P + + LI ++ R
Sbjct: 292 KNDVAAMTIPAAAEYLAALRRSGVGGLTRPLVAYYNKFAYPFANLLLVLIGVPIA-STRR 350
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ A G+ F+ ++ + + G +G L P A +P + +++L+L
Sbjct: 351 RGGQAVRFAIGLLIAFVYLSVQKLAEPLGYAGTLSPAWTAWLPHLTFAVVALLVL 405
>gi|307155108|ref|YP_003890492.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
gi|306985336|gb|ADN17217.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
Length = 405
Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 60/375 (16%), Positives = 136/375 (36%), Gaps = 20/375 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
++ RY + + + + V + +L+++ N++ E + I + RVP
Sbjct: 33 ISLMDRYIATQLIPPYILSVGLFTSMGVAIANLSDLSNKVLEY-DLPIVDALKILLYRVP 91
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+P L+ ++ + L+ SEL+ R+ GIS+W+ P V+ S+++ T +
Sbjct: 92 EFFSYALPISVLLTTLMTYGRLSSESELIALRSCGISLWRATIPAVMLSLIVTGLTFIFN 151
Query: 121 NPIATSGEKIG----IDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP----E 172
+ + ++ + + + + QI P K + +
Sbjct: 152 ECVVPETNYRATGILVKVLHEERHFWQNKDIFYPNYEQIKLPNGQTLRQLKSLFYAEKFD 211
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTT--- 227
+ T I + ++ +D A +D+ Y K + T
Sbjct: 212 GQKMQSLTIINWLGE-RLNEIVVSDTAQWNSDQNIWDFFDGTVYLIDGNAAYKEAVTFKH 270
Query: 228 --LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLML 284
+P + F + ++ ++ + +S N R E + I P +
Sbjct: 271 QQFPLPKEAFEFASQGRSPYEMNLFQAVQYKNLLQESGDTKNVRFFEVRIQQKIAFPFIC 330
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ ++ A++ + + ++ + + F Y + SFG G+L P AA +P
Sbjct: 331 LVFGVMGAAIGAKPQQMSR-GTSLGLTVGIVFAYYMVNFFTGSFGMIGLLSPSMAAWLPN 389
Query: 345 ILTISLSILILLQKE 359
+ + IL + E
Sbjct: 390 FFGVGIGGWILKKLE 404
>gi|323525103|ref|YP_004227256.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1001]
gi|323382105|gb|ADX54196.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1001]
Length = 382
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 65/377 (17%), Positives = 124/377 (32%), Gaps = 28/377 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I RYF + T ++ L L F DL N +G NY + A + P
Sbjct: 3 IYERYFARQVYLTFIFILFAFSGLFFFFDLINELNSVGH-GNYKFQYAVLRVALQTPSRF 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IIP L+ I VF + SE I R G++ Q L + I L T L+ I
Sbjct: 62 YEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVFLTYLIGEVI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWE 177
+++ + + + W+ + Q F+ ++ P+ I
Sbjct: 122 GPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTLTARADGEQVTRFVNVGELRPDATI-S 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNS----------- 225
+ D K ++ + + A + +L V + Q +P +
Sbjct: 181 NVRIYEFDSKFRLSNVRIAKSGVYQPPGHWQLTGVTDTQLIDVPPPSGTPADALNPVYRA 240
Query: 226 -------TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+L + S + + + + + N R E + +
Sbjct: 241 KQVVLPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTE-NHQDTQRYEIALWRKL 299
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+ P + M +++ + +R+ + V GI G T+ G
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPL 359
Query: 339 AALIPVILTISLSILIL 355
A P ++ + L ++ L
Sbjct: 360 TAATPGLVYLVLGLVGL 376
>gi|194290553|ref|YP_002006460.1| permease, yjgp/yjgq family [Cupriavidus taiwanensis LMG 19424]
gi|193224388|emb|CAQ70399.1| putative permease, YjgP/YjgQ family [Cupriavidus taiwanensis LMG
19424]
Length = 392
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 62/385 (16%), Positives = 125/385 (32%), Gaps = 43/385 (11%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYF + + L + L D+ + Y+ + P + ++
Sbjct: 9 RYFGRLVYGVFAFILFAVLSLFVFFDMLNELENV--NAQYTSLVALFHVLLQAPTRVYEV 66
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I VF L SE I R G++ Q L ++ L + T + I
Sbjct: 67 LPIAVLISAIYVFSQLASQSEYTIFRVAGLNTRQALFSLFKLAVPLALVTFIFGEFIGPR 126
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQI------SNPQQDIFIGAKKILPENHIWEDFT 180
E+ + + W++ + + F+ + P+ I T
Sbjct: 127 AEQYAQKVKLEAIGATVSSGFRSGVWVKDRDKDPAGDGEITRFVNVAGLRPDQTI-TGIT 185
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQY--------GRIPIDKNSTTLN-- 229
D + ++ + A + +L+ V E ++ G P
Sbjct: 186 MYEFDPQYRLRVIRVAQEGRYQGGQSWELQNVSETRFVELAPHAQGAQPAAATPPRDALA 245
Query: 230 -------------------IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA 270
P + E+ ++ + I+ + + + R
Sbjct: 246 PDFRAEQVKFPRVAMHSELTPQILSVLLVTPERMSTLDLFRYIRHLRDNKQ----DTQRY 301
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
E F+ ++ PL L M +A + +R+ + V GI G + T+ G
Sbjct: 302 EIAFWKKVIYPLTLFVMVALALPFAYLHARAGAVGVKVFGGIMLGLSFHLSNTLFSHVGL 361
Query: 331 SGILLPVAAALIPVILTISLSILIL 355
P+ +AL+P L + +++L L
Sbjct: 362 LHTWPPIISALVPGTLYLMVALLAL 386
>gi|188993098|ref|YP_001905108.1| Predicted YjgP/YjgQ family permease [Xanthomonas campestris pv.
campestris str. B100]
gi|167734858|emb|CAP53069.1| Predicted YjgP/YjgQ family permease [Xanthomonas campestris pv.
campestris]
Length = 368
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 59/365 (16%), Positives = 124/365 (33%), Gaps = 9/365 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP + Y + L T L + L V +G+ +YS A VP
Sbjct: 4 MPRVHDWYVGRAVLFTVLLTWAVLLGLDVVNAFASEAKSIGQ-GSYSFGHAIAFVAYTVP 62
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P ++ ++ L TSEL RA+G+S ++ VV LL V+
Sbjct: 63 RRAYTLFPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVVAMALLTATMVISG 122
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENH---IW 176
+ + L + D + W + + + G +++L
Sbjct: 123 ETVGPWAQSQADTLKTSARYQSDMTSARYSGLWAREGDTFLNALSGEEQLLDNGGTALTL 182
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIK 233
D +D K ++ A +A + + L++V + + + + +
Sbjct: 183 HDVRLYHLDAKGQMQQLTYAAVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQLN 242
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + S +++ + + + + N E Q++ PL ++A+ L A
Sbjct: 243 PKALAAGLAKPRNLSVHDLGQSIEY-RRRNGLDASDYEDQYWSRWFYPLNVLALCLAAIP 301
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S RS + GI + + + L A +P ++ + +S
Sbjct: 302 FSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAW 361
Query: 354 ILLQK 358
+ ++
Sbjct: 362 LFRRR 366
>gi|294507117|ref|YP_003571175.1| conserved hypothetical protein, membrane [Salinibacter ruber M8]
gi|294343446|emb|CBH24224.1| conserved hypothetical protein, membrane [Salinibacter ruber M8]
Length = 410
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 51/355 (14%), Positives = 125/355 (35%), Gaps = 10/355 (2%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R+ K LK + F+ ++ V+ E + + V VP II+
Sbjct: 55 RHIIKRLLKGFVLFVGALLVFFIVLHWVEYSDDFLDGGATIWEVFTVFYPNYVPEIIRLT 114
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P + I + L + +LV + G+S++QL+ P++ +L+ +F +
Sbjct: 115 SPLALFLSCIYLTGTLAQELQLVALQTSGVSLYQLMRPYLGVGLLVTVFMFGFNGWVVPK 174
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ + ++ K + + + + + +
Sbjct: 175 TNEVVVRYENEYLPGNQKSVQTSEIHRR---NGPNSILSVGYYDADRERAHTVSLQQLAG 231
Query: 187 KNKIIHRKDADLAIIYN--DKVKLKKVVEYQY--GRIPIDKNSTTLNIPIK--MDGFQKF 240
++ R DA+ + + +L V + G + +L+ ++ +
Sbjct: 232 DARLARRVDANRMEWDDSLEVWRLDDVTRRTFVKGETQRKRTIASLDTTLQVYPRDLARS 291
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
A+ + + ++ +S + R +Y P + + LI ++ R
Sbjct: 292 KNDVAAMTIPAAAEYLAALRRSGVGGLTRPLVAYYNKFAYPFANLLLVLIGVPIA-STRR 350
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ A G+ F+ ++ + + G +G L P A +P + +++L+L
Sbjct: 351 RGGQAVRFAIGLLIAFVYLSVQKLAEPLGYAGTLSPAWTAWLPHLTFAVVALLVL 405
>gi|16332044|ref|NP_442772.1| hypothetical protein sll0496 [Synechocystis sp. PCC 6803]
gi|1001356|dbj|BAA10843.1| sll0496 [Synechocystis sp. PCC 6803]
Length = 394
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 56/375 (14%), Positives = 138/375 (36%), Gaps = 28/375 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRVP 60
++ RY + + L+ + L I +L+++ N++ E N +++ A + +VP
Sbjct: 21 ISLMDRYVARQLIPPFLFSVGVVASLGLAIGNLSDLGNKIVEK-NLPVAKAAEVLLLKVP 79
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P ++ ++ F L+ E++ R+ G+S+++L+ P VV S+L+ + ++
Sbjct: 80 EFLAYSLPVAVMLATMMTFGRLSGDCEIIAIRSCGVSLYRLILPAVVLSLLVTGWAFVLT 139
Query: 121 NPIATSGEKIG----IDLIQQWKDNGDKQKSDIIPWMQISNPQQDI------FIGAKKIL 170
+ I+ I + + + +I + A+K
Sbjct: 140 EWVVPVANYRATSILIESIDEEHPFWQNRDVFYPEFEEIKLDNGQTARRLKSLVYAEKF- 198
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRI-----PIDK 223
+ ++ T + + N + H +D A ND + Y+ +
Sbjct: 199 -DGKEMQNLTVLQWTE-NHLKHIVLSDNATWNNDNKRWDFFHGTVYRLTETEDYQEAVPF 256
Query: 224 NSTTLNIPIKMDGFQ---KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+ + +P F + + + IK + + + +
Sbjct: 257 TNKQIALPQSAFDFARQGRDPYEMTIAEAQDYIKILKLIGDEK--KTQFFQVRTEQKLAF 314
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
P + + ++ +++ R ++ I F Y + S G G++ P AA
Sbjct: 315 PFVCIVFAVVGSAIGARPQRISR-ATGFGLTIVIIFAYYILGFFSGSLGIVGLISPTLAA 373
Query: 341 LIPVILTISLSILIL 355
+P + + + I +L
Sbjct: 374 WLPNFVGLGVGIWLL 388
>gi|121730751|ref|ZP_01682851.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|121627676|gb|EAX60335.1| conserved hypothetical protein [Vibrio cholerae V52]
Length = 289
Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats.
Identities = 57/299 (19%), Positives = 110/299 (36%), Gaps = 20/299 (6%)
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L+ ++ L +SELV+ +A G S + + +I L I L+ A +
Sbjct: 1 MAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWGAPQAQ 60
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
K+ D+ G W + +N FI K+ EN D+
Sbjct: 61 KMARDMRAFATSGGAIMSVRTGVWARDAND----FIFIAKV--ENEQLYGLNLWRFDENK 114
Query: 189 KIIHRKDADL-AIIYNDKVKLKKVV--------EYQYGRIPIDKNSTTLNIPIKMDGFQK 239
K+ ++ + N++ +K V E +P + T+L P K+
Sbjct: 115 KLSTVIFSEQVDYVANNEWLMKDAVLTRLVNDIEISKESLPEYRWRTSL-APDKLAVVTV 173
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
E+ + + + + S + + R E + + P+ + M L+A S
Sbjct: 174 KPEELSLTGLSDYVHYLKASEQ----DSSRYELALWRKVTQPISIAVMMLMALSFIFGPL 229
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
RS + G+ +GF Y L P+ AL P ++ +++++ +L +K
Sbjct: 230 RSVTMGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 288
>gi|251771422|gb|EES52001.1| permease YjgP/YjgQ family protein [Leptospirillum
ferrodiazotrophum]
Length = 361
Score = 165 bits (419), Expect = 8e-39, Method: Composition-based stats.
Identities = 55/359 (15%), Positives = 123/359 (34%), Gaps = 11/359 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL R+ Y+K L+ + VID E + S A R +
Sbjct: 2 KILTRHIMGEYIKIYFLSLVSLEAIYLVIDSVEKIKSFLAH-HAPWSLMGEFFAWRSIEV 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++IP L+ I+ ++ E+ RA GIS+ + P V+ LL + +L+
Sbjct: 61 GFRVIPMSALLATILALGIASKNHEITAIRAAGISLGKATFPIVLFGALLSLIELLLNLW 120
Query: 123 IATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + ++++ + +G + W + + + KI + T
Sbjct: 121 VVPHAYQTTDVIMEERINQGSGWSGEVRRNVWFRHGSRE---IFRIAKIEQGGTRLDTVT 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVE--YQYGRIPIDKNSTTLNIPI--KMDG 236
K + +A + N V + ++ TL P+ +
Sbjct: 178 IYHKSPKADLQWTIEAKTLLYENGGWVFHDGVRTLFHKDGTLSSESFATLPFPLDRRPAD 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F + ++ E+ + + + + H ++ P M L A +
Sbjct: 238 FFIRKTHLSHLTYAELSRTIDLLKANGLPHKN-FTVLRDGVLAFPAASFLMVLFAIPFGI 296
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + +T+ ++ + G+ G++ P+ AA ++ +++ + +L
Sbjct: 297 REGRQVGIARGFGVALMLSLSYWTLYSMGLALGRGGVIPPLLAAWFANLVVLAVGLGLL 355
>gi|119511693|ref|ZP_01630798.1| hypothetical protein N9414_06074 [Nodularia spumigena CCY9414]
gi|119463678|gb|EAW44610.1| hypothetical protein N9414_06074 [Nodularia spumigena CCY9414]
Length = 371
Score = 165 bits (419), Expect = 9e-39, Method: Composition-based stats.
Identities = 52/355 (14%), Positives = 118/355 (33%), Gaps = 16/355 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RYF K + L+ + L ID + IS + + P I
Sbjct: 1 MDRYFTKELVAPFLFGVGAFSSLGVTIDAVFELVRKIVESGLPISIAIQVFLLKFPNFIV 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
P TL+ ++ + L+ SEL+ R G+S+++++ V+ S+++ T + IA
Sbjct: 61 LAFPMSTLLATLMTYSRLSGESELIAMRGCGVSVYRMVLTAVMLSLVVTGITFIFNEQIA 120
Query: 125 TSGEKIGIDLIQQWKDN---GDKQKSDIIPWMQ---ISNPQQDIFIGAKKILP--ENHIW 176
+ +++ + +Q + P + + ++ + +
Sbjct: 121 PAANYQATVTLEKALKSDRPTFQQSNIFYPEYRDVEQPDGSRNRILARLFYADQFDGKQM 180
Query: 177 EDFTSITIDKKN-KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP-----IDKNSTTLNI 230
+ T I + I ++ ++ Y + L +
Sbjct: 181 KGLTIIDRTTEGLNQIVVSESAQWNASDNVWDFYNGTVYLVAPDSSYRNILRFEHQQLQL 240
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVAMTL 289
P + + E ++++ R + + +P + V L
Sbjct: 241 PRTPLNLVERRRDSGEMNIRESLEQLEIQRIGGDRKEIRKLQVRIQQKFSLPFVCVVFGL 300
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ +++ RS + + F Y I I + G++G+L P A +P
Sbjct: 301 VGSAMGSRPQRSGR-GTSFGVSVIVIFTYYLIFFISGAMGQAGVLSPFMGAWLPN 354
>gi|262373935|ref|ZP_06067212.1| permease YjgP/YjgQ family protein [Acinetobacter junii SH205]
gi|262310946|gb|EEY92033.1| permease YjgP/YjgQ family protein [Acinetobacter junii SH205]
Length = 356
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 60/361 (16%), Positives = 140/361 (38%), Gaps = 21/361 (5%)
Query: 7 RYFFKYYLKTTLYFLLGA-MILVFVIDLNEIQNQMGEL-PNYSISRGAVLAATRVPLIIQ 64
R K+ KTT+ +LG ++L F+ L ++G L PNY+ + + P +
Sbjct: 5 RIVAKHVTKTTVLAMLGTTLVLSFLQVLFTYLGELGSLKPNYNAWQAFLYVMWGAPRYLY 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+I+P L+ +++ L SEL++ R++GIS+W+++ + ++LL + + ++ +
Sbjct: 65 EILPVAALIGSVLGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFVLSEWVI 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + + W + + F + + SI
Sbjct: 125 PYTNEKAQSI--KKQRSVATLGEVKGYWSR----EGQRFTYIDYANSQGQ-LRNIQSIDF 177
Query: 185 DKKNKIIHRKDADLAII-YNDKVKLKKV----VEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
D+ ++ A+ + + L+ + Q I D L + ++
Sbjct: 178 DQNYRLQSFITAEKGQFVKDGQWTLQDSHQVDLLAQGNAIKTDHAQQALGLALQPKYVHM 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S +++ M + + + E F+ + P L+A+ LIA S
Sbjct: 238 VTLDPEDLSPSQLVSFMRYLEEYSQVPKS-YELAFWQKVSSPFALIALVLIACSFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL---IPVILTISLSILILL 356
R + +F+G + + G + ++ + A +P++L + +L
Sbjct: 297 RQQSMGFRLVIALFTGLGFFYLQDF---LGYASLVYAPSPAWFVLLPIMLMFGIGSYLLY 353
Query: 357 Q 357
+
Sbjct: 354 R 354
>gi|119503286|ref|ZP_01625370.1| hypothetical protein MGP2080_11498 [marine gamma proteobacterium
HTCC2080]
gi|119460932|gb|EAW42023.1| hypothetical protein MGP2080_11498 [marine gamma proteobacterium
HTCC2080]
Length = 353
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 55/327 (16%), Positives = 111/327 (33%), Gaps = 11/327 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G RY L T+ L + L + + + + + P+Y + + A +P
Sbjct: 2 GRFDRYLAGNVLGATVGVLAVLVGLDALSSVIDELDDLS--PDYGFTDALIYVAFTLPRR 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + +PF L+ +V L TSEL + RA G S+ QL + ++LL + LV
Sbjct: 60 LHEYVPFAALIGALVGLGRLAATSELTVVRAAGRSLPQLALGTLRPALLLAVLGFLVGEF 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
++ E+ + + + W N D FI + I +
Sbjct: 120 VSPVAEQFAVSHKALAQGSQSSFTGRGGVW----NRDGDTFIHVSAV-ERGGIIHGVQLL 174
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQK 239
T D++ ++ A+ + L+KV + + ++ +
Sbjct: 175 TFDEERRLTRSLRAERGTYQGGQWLLEKVSRTELTQDRAVTDALIQQVWETEVTPQLLAL 234
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S E+ + K + + E F+ ++ P + + L+A S
Sbjct: 235 EAVALDSLPTLELWPYAQYLRKQGLMYRD-VELAFWRKVLQPFAVAGLVLVAMSFIFGPL 293
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMK 326
R + G+ G +
Sbjct: 294 REGSLGARIFTGVIIGVVFRISQDFFG 320
>gi|189219653|ref|YP_001940294.1| permease [Methylacidiphilum infernorum V4]
gi|189186511|gb|ACD83696.1| Predicted permease [Methylacidiphilum infernorum V4]
Length = 395
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 65/362 (17%), Positives = 134/362 (37%), Gaps = 16/362 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL+RY FK +L L+ ++ LV + DL + + + +P
Sbjct: 26 MKKILFRYLFKGFLFPLLFTIVAFCSLVIIADLFGSLEDFIQN-KATPGQIFHYYLAYLP 84
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+I I+P +L ++ L+R EL+ +A G+ + ++ PF++ +L+ +F +
Sbjct: 85 AVIIMIVPPASLFSSLYFLMQLHRHGELIAMQACGVPLQKIFTPFLIIGVLVTLFLAALQ 144
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + +++ K N + + ++ +++ + ED
Sbjct: 145 LGPGGNSQAKRDQILEDIKGNKTAVHALRGIIYKEEAEKR--IWYFRQLDFIKNQGEDVE 202
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI---------P 231
+ + K + + A A ++ +V Y ST P
Sbjct: 203 VVVQENSGKDLKKYFARKAAWKDNHWIFYEVNRIDYDSANNFLQSTYFETLPLVSWNTPP 262
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+M +K + +++I K K+ + + QFY L+ PL ++ + LI
Sbjct: 263 RQMVALEKKPRDLNASELWKLINKPRSIQKTLLAP---YQVQFYTLVAEPLTILVLLLIG 319
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+ S S P V +F Y I + G+ + P A P++ S
Sbjct: 320 LAEGGRLS-SRHPTAGVFNALFILIAFYLIFHFFQILGQGSRIPPAVAIFSPLVAFTLFS 378
Query: 352 IL 353
+
Sbjct: 379 LF 380
>gi|160898976|ref|YP_001564558.1| permease YjgP/YjgQ family protein [Delftia acidovorans SPH-1]
gi|160364560|gb|ABX36173.1| permease YjgP/YjgQ family protein [Delftia acidovorans SPH-1]
Length = 369
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 58/360 (16%), Positives = 127/360 (35%), Gaps = 22/360 (6%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN--YSISRGAVLAATRVPLIIQQI 66
++ + Y L + L F DL + +G + Y I+ + R+P + ++
Sbjct: 8 LYRDIIAAVGYVTLAFLALFFFFDLVDELRWVGRGGDNGYQITHALLFVVLRIPSHLYEL 67
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I V ++SE I R G+ W L +V + + T + +A +
Sbjct: 68 MPITVLIGTIYVMARFAQSSEFTIMRTSGMGPWLALRTLMVLGLGFVLATFGTGDYLAPA 127
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E G ++ + W++ I I + I + + D
Sbjct: 128 AENAGQNIRAIHLAQ--LSRGATGAWLKERQGDHSIAINVRAIRGPGD-FSNVRIFDFDG 184
Query: 187 KNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIP--------IDKNSTTLNIPIKMDG 236
+ +I + A A + D L+ V + ++S I +
Sbjct: 185 QGRISAQIHAQAAQVSEDGESWTLQGVEASRLKAKADAGMVLLREKEDSLVWKTGISAEM 244
Query: 237 FQ---KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
++ ++ S ++ ++ + + ++ + E +F+ + P+ + M ++A
Sbjct: 245 VSAALLKPDRMSTISLFQYVRHLEANGQA----AQKYEIEFWRKVFYPMSCLVMVVLALP 300
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ RS V G+ +G + + + G P A P +L LS+
Sbjct: 301 FAYLHFRSGGIAAYVFGGVMAGISFFLLNNVFGYIGTLQTWSPWLTAAAPGLLYSLLSLT 360
>gi|294788100|ref|ZP_06753344.1| permease, YjgP/YjgQ family [Simonsiella muelleri ATCC 29453]
gi|294484393|gb|EFG32076.1| permease, YjgP/YjgQ family [Simonsiella muelleri ATCC 29453]
Length = 355
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 138/360 (38%), Gaps = 11/360 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L +Y K + Y LL + L IDL +G+ NY+ ++P
Sbjct: 2 KLLTKYLIKRLTVMSCYALLAVLALYSFIDLLSEIGNVGK-GNYTGWTAFKYIIMQMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
Q++P TL+ ++ L+ +SEL + + G+S ++ + S + + T+L+
Sbjct: 61 AYQLMPLATLIGGLLALSQLSSSSELAVIKTSGLSTADIIRIILKFSAIFALATILLGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + K++ S W++ + + +LP+N +
Sbjct: 121 LAPELGRRADAMKTTAKESSI-TASVTGLWLRQ----GENIVNIAAMLPDNT-LTNIRIW 174
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI---DKNSTTLNIPIKMDGFQK 239
+ + ++ A+ A +++ K L+ Q I I +
Sbjct: 175 RYNPQFELTEAIIAEKAQVHDGKWVLQNAKISQLTNKHINIQHIKQMNWQTNINQNLLNV 234
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ SF + + + + K N + ++ +V P+ + M+L+A + + +
Sbjct: 235 LVVKPEQMSFSALTRYIKYL-KKNQQQTSAYDVVWWNKLVYPIATMVMSLVALAFTPNSA 293
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R + + + GI G + + + + + +A++P ++ ++ ++E
Sbjct: 294 RHSNMGLKLFSGICLGLLFFFTGRLFGFTTQLYGVPAFFSAILPTATFALWAVYLIHKQE 353
>gi|218440672|ref|YP_002379001.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
gi|218173400|gb|ACK72133.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
Length = 388
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 69/376 (18%), Positives = 144/376 (38%), Gaps = 24/376 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
P I+ RY F L L+ + L + + L ++ ++ E S++ + + ++P
Sbjct: 16 PSIVDRYLFMELLIPFLFGMGLFTSLGIAIGTLFDLVRKVTE-SGLSLTVALQILSLKMP 74
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P L+ ++ + L SEL+ R+IG+S ++LL P ++ S+++ T
Sbjct: 75 EFIVLAFPMSILLATLMAYSRLASDSELIALRSIGLSPYRLLVPSIILSLMVTGVTFFFS 134
Query: 121 NPIATSGEKIGIDLIQ---QWKDNGDKQKSDIIPWMQ---ISNPQQDIFI----GAKKIL 170
+ +A + ++ + + + I P + + N + + A+K
Sbjct: 135 DYVAPQATQQAKQILADALKKDQPAFVEDNIIYPEYRKITLENGRDQTVLTRLFYAEKF- 193
Query: 171 PENHIWEDFTSITIDKKN--KIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDK 223
+ + T + + +I+ + A + + ++ Y R +
Sbjct: 194 -DGQQMQGLTILDRSQPGVNQIVTSQSA-MWNLDSNSWDFYNGTIYLIAPDGSYRNIVRF 251
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPL 282
L++P K + A S E + + S R E + +P
Sbjct: 252 QHQKLDLPRAPLDIAKGKQNPAEMSIAEAKEYLRIVKLSKNEPRARKVEVRIQEKYALPF 311
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ + LI +++ L+ +N I F Y + I S G GI+ PV +A +
Sbjct: 312 VCIVFGLIGSAIGLKPQ-NNNKATSFGICIILIFSYYLLSFIASSMGIWGIISPVVSAWL 370
Query: 343 PVILTISLSILILLQK 358
P L I ++L+Q
Sbjct: 371 PNTLGIIAGTVLLVQT 386
>gi|330720162|gb|EGG98555.1| putative Permease [gamma proteobacterium IMCC2047]
Length = 323
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 57/309 (18%), Positives = 102/309 (33%), Gaps = 16/309 (5%)
Query: 41 GELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQ 100
G+ +Y + VP I I P L+ +++ L SEL + RA+G+S+ +
Sbjct: 9 GKEGDYGTPEVLMYVLMTVPKRIYVITPLAVLIGSLLGLGMLANNSELTVMRAVGMSVAR 68
Query: 101 LLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ 160
+ + ++L +L+ + E + G+ S W +
Sbjct: 69 ISWAAIKPALLFVAAALLIGEFVVPHSENYAQSQRALAESRGEAVSSKYGYWHR----GG 124
Query: 161 DIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP 220
D F+ +LP + T D K K+ A+ AI D LK++
Sbjct: 125 DTFMHFNAVLPGG-VLYGVTQYEYDDK-KLTRSLFAEKAIFQGDHWVLKQIKHSYLSDTQ 182
Query: 221 IDKNS------TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQF 274
++ T P + + + + R F
Sbjct: 183 VEAGEDLTLRWDTELTPEVLKVVVVDPADLSIMGLHTYTNYLKEQE----LDAKRYLLAF 238
Query: 275 YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
+ ++ P +V M L+A S RS V GI G + I +
Sbjct: 239 WKKVLQPFAIVVMVLVALSCIFGPLRSVTMGYRVFAGIILGVVFRYIEDFLGPASIVFGF 298
Query: 335 LPVAAALIP 343
PV A+++P
Sbjct: 299 EPVFASIMP 307
>gi|317486218|ref|ZP_07945052.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
gi|316922517|gb|EFV43769.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
Length = 357
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 67/365 (18%), Positives = 136/365 (37%), Gaps = 19/365 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L+RY K L L + L + DL E + E S+ ++PL+I
Sbjct: 3 LLFRYLTKNNAMILLPTLAVGIGLYVLTDLFERLDNFIE-AGLSVGMVLTYFVVKMPLVI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QI+P I L+ ++ + R+ EL +A GIS+ + N ++ I G + +
Sbjct: 62 SQILPVIFLLSTVIQLCIMARSRELTALQAGGISLGVVANSMILCGIFWGGVQLGFSEYL 121
Query: 124 ATSGEKIGIDLIQQW-KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+GE+ + Q+ + W + +I + L F+
Sbjct: 122 GVAGERESARIWQEEVRKKNLAATVLKDVWFTDGD-----WIVSLGTLDPQAHGTGFSGY 176
Query: 183 TIDKKNKIIHRK-DADLAIIYNDKVKLKKVVEYQYGRIPIDKNS-TTLNIPIKMDGFQKF 240
+ I R A + L+ V Y ++ L + + F+
Sbjct: 177 ELSDDGLSIKRIVQASTFTAEPNHWALQDVRVYTPDTFTQEQEPDFVLPLRQDPETFRLV 236
Query: 241 S--EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S + +++ +S KS+ + T ++ + ++ M +A ++
Sbjct: 237 STGTKPQQLPLWQLGDAISQL-KSSGSNVEALRTAWHAKLAYAASILVMAFVATAI---V 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL----I 354
S + I V + F+ + + T+ + G+ GIL P AA ++ + + +
Sbjct: 293 SWKDNIYIAVTVALLCTFLYFAVYTLGTTLGQRGILHPFLAAWTANLIALFFAFWRLIPL 352
Query: 355 LLQKE 359
LL++E
Sbjct: 353 LLRRE 357
>gi|296114025|ref|YP_003627963.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis RH4]
gi|295921719|gb|ADG62070.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis RH4]
gi|326566094|gb|EGE16251.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis BC1]
gi|326572162|gb|EGE22158.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis BC7]
gi|326573712|gb|EGE23670.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis O35E]
Length = 369
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 61/373 (16%), Positives = 140/373 (37%), Gaps = 28/373 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y + L ++G ++ V + + E Y+++ + R P +
Sbjct: 5 ILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNISE--TYTLTDALLFILYRSPYFL 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q IP TL+ ++ L SEL++ RA G+SI+++++ ++ +++ + ++ V +
Sbjct: 63 VQFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVVISLGVNQFV 122
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + DK + W + + E +
Sbjct: 123 LPTANQHAAAIRAD--TIYDKLITIDGYWSVNHDGDNQDVVYISYADNEGG-LGEVKRYQ 179
Query: 184 IDKKNKIIHRKDADLAIIYNDK------------VKLKKVVEYQYGRIPIDKNSTTLNI- 230
+ K ++I A + +L + E G + + + I
Sbjct: 180 L-KDGQLITALKAKSGVYLPQSDDVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKIL 238
Query: 231 -----PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
P + K E + S Y + M+ ++ R E F+ ++ P ++
Sbjct: 239 TLPIAPTDVYLLTKEPEDLSLSSLYAHRQLMAHQGTRSL----RHELAFWQKLLSPFAVL 294
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++ L+A+S RS + V + +G + + + + L P+ AL+P++
Sbjct: 295 SLVLVASSFVFGSLRSQGLGLRVVLALLTGLLFSYLTDLTGFVALATGLSPLLMALVPIV 354
Query: 346 LTISLSILILLQK 358
L+ + +L +K
Sbjct: 355 LSAMAGMYLLNRK 367
>gi|307728895|ref|YP_003906119.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1003]
gi|307583430|gb|ADN56828.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1003]
Length = 382
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 65/377 (17%), Positives = 124/377 (32%), Gaps = 28/377 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I RYF + T ++ L L F DL N +G NY + A + P
Sbjct: 3 IYERYFARQIYLTFIFILFAFSGLFFFFDLINELNSVGH-GNYKFQYAVLRVALQTPSRF 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IIP L+ I VF + SE I R G++ Q L + I L T L+ I
Sbjct: 62 YEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVFLTYLIGEVI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWE 177
+++ + + + W+ + Q F+ ++ P+ I
Sbjct: 122 GPYTDQLSERVRLEAMGSSVSSNFKSGVWVKDTLTARADGEQVTRFVNVGELKPDATI-S 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP---------------- 220
+ D K ++ + + A + +L V + Q +P
Sbjct: 181 NVRIYEFDSKFRLSNVRIAQSGVYQPPGHWRLTGVTDTQLIDVPPPAGTPADALNPVYRA 240
Query: 221 --IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+ +L + S + + + + + N R E + +
Sbjct: 241 KQVVLPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTE-NHQDTQRYEIALWRKV 299
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+ P + M +++ + +R+ + V GI G T+ G
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPL 359
Query: 339 AALIPVILTISLSILIL 355
A P ++ + L ++ L
Sbjct: 360 TAATPGLVYLVLGLVGL 376
>gi|86605800|ref|YP_474563.1| YjgP/YjgQ family protein [Synechococcus sp. JA-3-3Ab]
gi|86554342|gb|ABC99300.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
JA-3-3Ab]
Length = 376
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 63/356 (17%), Positives = 137/356 (38%), Gaps = 14/356 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY F L L + G +L+ L + ++ E + L +P
Sbjct: 8 FWLLERYLFGQMLTPVLAGIAGGTLLLLAGRLFTLAERLVE-GSVPPLTVLRLLILDLPE 66
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P ++ L+ SE+ RA GI ++ P ++ +L+ + + N
Sbjct: 67 MVLLGMPIAAFFATMLTLGKLSGNSEITAMRAAGIPFTRIFRPLLLVGLLMSLSAFWISN 126
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ---ISNPQQDIFIGAKKILPENHIWED 178
+ + ++ + QQ + + + + +++ +++ P + +D
Sbjct: 127 VLLPASKREIRQIDQQALLARATTPVQYDVFFRTARVGGTEDNLWFFIRQVDPRLNTMQD 186
Query: 179 FTSITIDK----KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-----IPIDKNSTTLN 229
T + +D K ++ A A+ L + V ++YG + L
Sbjct: 187 VTILQVDPLPGGKYQLAEVTLAAQAVWNGLDWTLSEGVTHRYGPDGLSLAEEPFDRKPLE 246
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ + + S E+ +++S +SN+ + T+F+ +PL L
Sbjct: 247 VSQDLAALMQPPVPPNELSLPELAERISRLARSNL-NTQPLRTEFHMRFSLPLASFFAVL 305
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
I+ + +R V +GI F Y ++++ +S G++G L P AAA I
Sbjct: 306 ISLPLGSTTARRVGRYGGVVFGILLVFAYYVVLSVSRSLGEAGALPPWAAAWSFNI 361
>gi|220935306|ref|YP_002514205.1| permease YjgP/YjgQ [Thioalkalivibrio sp. HL-EbGR7]
gi|219996616|gb|ACL73218.1| permease YjgP/YjgQ [Thioalkalivibrio sp. HL-EbGR7]
Length = 353
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 131/359 (36%), Gaps = 17/359 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y + + TL +L L + +++G +Y + + V A VP +
Sbjct: 4 LDAYIARNVMGGTLLAMLVLGGLDTLFAFIAELDEIGRN-DYGLIQAVVYTALTVPRRVY 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++ P L+ +++ L SEL RA G+ I ++ + +++ + VL+ +A
Sbjct: 63 ELFPTSVLLGSLLSLGALAANSELTAMRAAGVPIAGIVRSVLRAGLMMLVVVVLLGEAVA 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ + Q + S W + FI ++P+ D + +
Sbjct: 123 PMSEQRAQTIKSQASGEEMYRGS-AGLWAK----DGQRFIQVGVVMPD-LRLLDLSIYEL 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI------DKNSTTLNIPIKMDGFQ 238
D + ++ A A N L+ + G + ++ L P
Sbjct: 177 DAERRLSSMLRAGSASYQNGAWILRDIERSHLGEAGVTGEHVDEERWPRLLAPELFSVLA 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
Q A+ + + + + ++ + E F+ PL + M L+A
Sbjct: 237 VEPRQMAATTLAQYVTYLREND----LDSASFELAFWMRFTTPLSSLVMLLLAVPFVFGS 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ + G+ G + + + G L P+ +A +P ++ ++++L L +
Sbjct: 293 LRTGGAGQRLFIGLLIGVGFHLLNRTLNHMGLVYGLPPMLSATLPTLIFFAVAMLALRR 351
>gi|78356992|ref|YP_388441.1| permease [Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
gi|78219397|gb|ABB38746.1| permease, putative [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 359
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 62/360 (17%), Positives = 129/360 (35%), Gaps = 16/360 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + L T+ L + + DL + + + A ++PLII
Sbjct: 3 ILSRYLLRTNLFLTMLTLTIGTGIYLLSDLFDRLDDFLG-AGLGLKVILTYFAVKIPLII 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QI+P + L+ ++ + R ELV +A GIS +L F++ +++ + +
Sbjct: 62 SQILPAVFLLSAVIQLCVMARDRELVALQAGGISFLRLARFFIIYALIWSAVQLGFSQVL 121
Query: 124 ATSGEKIGIDLIQQW-KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
GE+ + ++ ++ + W I + + P T
Sbjct: 122 GIYGEREASRIWKEQVRNREIDEVQLTNLWFTEHGR----IIHLETLHPAAQKGSGITVY 177
Query: 183 TIDKKN-KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ--- 238
+ + + L G + S ++ +PI+ D
Sbjct: 178 ELTPDELSVQRVIRGKSFRADSSGWTLDGCDILIPGSYEVA-TSESIVLPIEQDVKAFSI 236
Query: 239 -KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ +++ ++ +S + T ++ + LV M L+A ++
Sbjct: 237 VDPRGDPSRLPLWQLQDAIARLTESGS-NVEALRTAWHMKLSYAFSLVTMALLALALI-- 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + I V + F+ YT+ T+ S G++GI+ P+ AA +I L+
Sbjct: 294 -TWRDSIYINVGTSLLLVFVFYTLFTVGGSLGENGIVPPLFAAWTANAFFSLSAIARLIY 352
>gi|171059278|ref|YP_001791627.1| permease YjgP/YjgQ family protein [Leptothrix cholodnii SP-6]
gi|170776723|gb|ACB34862.1| permease YjgP/YjgQ family protein [Leptothrix cholodnii SP-6]
Length = 368
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 61/362 (16%), Positives = 124/362 (34%), Gaps = 23/362 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R ++ L T Y ++ + L F ID +G+ Y ++ A+ +VP + ++
Sbjct: 6 RLLYREILGATGYVMVAFLGLFFFIDFMAELENIGQH-GYGAAQAALACLLQVPGHVYEL 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P L+ I L +SE I R G+ L + T ++ + +A
Sbjct: 65 APIAVLIGAIYALARLAHSSEFTILRTGGLGPGLALLLLTWLGLGFAAITFVIGDFVAPW 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQIS----NPQQDIFIGAKKILPENHIWEDFTSI 182
+ L Q + +G+ + W++ S + + + + E
Sbjct: 125 CDTQATLL--QARASGNLSVASGGAWLKDSASAADGEHRYTVNFAAARSDG-ELEKVRIF 181
Query: 183 TIDKKNKIIHRKDADLAIIYN-DKVKLKKVVE--YQYGRIP-------IDKNSTTLNIPI 232
K +I R A+ A+I + +L V + P + + +
Sbjct: 182 EFGPKGALITRTTAERAVIGDDGTWQLTDVRISHWTSDHTPRLDADEKLASHVWQSGLTR 241
Query: 233 KMDGFQKFS-EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ ++ + Y + ++ ++ R E QF+ + P + M +A
Sbjct: 242 NVVAAAVLPLRTMSTLALYNYMTHLADHEQA----AQRYEIQFWKKALYPFACLVMMGLA 297
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+ RS ++V GI G + + G P AA P + + LS
Sbjct: 298 LPFAYLHGRSGGIGLMVFGGIMLGIGFVLLNNLSSHLGLLQNWTPWLAASAPSAIFLLLS 357
Query: 352 IL 353
+
Sbjct: 358 LA 359
>gi|170692023|ref|ZP_02883187.1| permease YjgP/YjgQ family protein [Burkholderia graminis C4D1M]
gi|170143307|gb|EDT11471.1| permease YjgP/YjgQ family protein [Burkholderia graminis C4D1M]
Length = 382
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 64/377 (16%), Positives = 124/377 (32%), Gaps = 28/377 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I RYF + T ++ L L F DL N +G NY + A + P
Sbjct: 3 IYERYFARQVYLTFIFILFAFSGLFFFFDLINELNSVGH-GNYKFQYAVLRVALQTPSRF 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IIP L+ I VF + SE I R G++ Q L + I L T L+ +
Sbjct: 62 YEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVFLTYLIGEVV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWE 177
+++ + + + W+ + Q F+ ++ P+ I
Sbjct: 122 GPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTLTARADGEQVTRFVNVGELKPDATI-S 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP---------------- 220
+ D K ++ + + A + +L V + Q +P
Sbjct: 181 NVRIYEFDSKFRLSNVRIAKSGVYQPPGHWQLTGVTDTQLIDVPPPSGTPADALNPVYRA 240
Query: 221 --IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+ +L + S + + + + + N R E + +
Sbjct: 241 RQVALPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTE-NHQDTQRYEIALWRKV 299
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+ P + M +++ + +R+ + V GI G T+ G
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPL 359
Query: 339 AALIPVILTISLSILIL 355
A P ++ + L ++ L
Sbjct: 360 TAATPGLVYLVLGLVGL 376
>gi|260592209|ref|ZP_05857667.1| putative membrane protein [Prevotella veroralis F0319]
gi|260535843|gb|EEX18460.1| putative membrane protein [Prevotella veroralis F0319]
Length = 405
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 62/366 (16%), Positives = 131/366 (35%), Gaps = 18/366 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
GIL Y K ++ T +Y +L + + V D NE ++ + + A +P
Sbjct: 45 LGILDWYIIKKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFIPY 104
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ A G+SI +L+ P+++ +++ T + +
Sbjct: 105 YSNLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSIKRLMRPYMLSCVVIAGLTFYLNS 164
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G I + ++++ ++ + ++ + + F+
Sbjct: 165 FVIPHGTVIRQNFETLYRNSKKNTSAENV----QLFVAKNTTAYIQNYDDQYKRGYGFSL 220
Query: 182 ITIDKKNKI--IHRKDADLAIIYNDK--VKLKKVVEYQYGRIPID------KNSTTLNIP 231
+ I K + + + I + K KL + K++ L P
Sbjct: 221 VKIKNKKIVSHLTAMEIQYDTIADSKYHWKLSNWKIRTLKGLKEHIQSGTTKDTVLLMEP 280
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + E F S + I K + N+ + E +F+ I + +T+I
Sbjct: 281 TDLVYSKGQQETFTSPELLDYISKQTSRGSGNV---VQYEVEFHKRIAMSFSSFILTIIG 337
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
++S R + + G+ F + T+ +F PV AA IP I+ ++
Sbjct: 338 LALSSRK-RKGGMGLSLGIGLALSFSYIMLQTVSATFAIQDNTPPVLAAWIPNIIFAIIA 396
Query: 352 ILILLQ 357
Sbjct: 397 YFCYRH 402
>gi|21230126|ref|NP_636043.1| hypothetical protein XCC0651 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66769883|ref|YP_244645.1| hypothetical protein XC_3583 [Xanthomonas campestris pv. campestris
str. 8004]
gi|21111656|gb|AAM39967.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66575215|gb|AAY50625.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 368
Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 58/365 (15%), Positives = 122/365 (33%), Gaps = 9/365 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP + Y + L T L + L V +G+ +YS A VP
Sbjct: 4 MPRVHDWYVGRAVLFTVLLTWAVLLGLDVVNAFASEAKSIGQ-GSYSFGHAIAFVAYTVP 62
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P ++ ++ L TSEL RA+G+S ++ VV LL V+
Sbjct: 63 RRAYTLFPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVVAMALLTATMVISG 122
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENH---IW 176
+ + L + D + W + + + G +++L
Sbjct: 123 ETVGPWAQSQADTLKTSARYQSDMTSARYSGLWAREGDTFLNALSGEEQLLDNGGTALTL 182
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIK 233
D +D ++ A +A + L++V + + + + +
Sbjct: 183 HDVRLYHLDANGQMQQLTYAAVAEHREGRWTLRQVRRDTFQARSVQRETFPELPWQSQLN 242
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + S +++ + + + + N E Q++ PL ++A+ L A
Sbjct: 243 PKALAAGLAKPRNLSVHDLGQSIEY-RRRNGLDASDYEDQYWSRWFYPLNVLALCLAAIP 301
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S RS + GI + + + L A +P ++ + +S
Sbjct: 302 FSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAW 361
Query: 354 ILLQK 358
+ ++
Sbjct: 362 LFRRR 366
>gi|289663726|ref|ZP_06485307.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. vasculorum
NCPPB702]
gi|289668603|ref|ZP_06489678.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 368
Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 57/358 (15%), Positives = 120/358 (33%), Gaps = 9/358 (2%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L T L + L V +G+ +Y+ A VP +
Sbjct: 11 YVGRVVLSTVLLTWAVLLGLDLVNAFASEAKNIGQ-GSYTFGHAVAYVAYTVPRRAYTLF 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P ++ ++ L TSEL RA+G+S ++ V LL V+ I
Sbjct: 70 PTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPWA 129
Query: 128 EKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHI---WEDFTSIT 183
+ L + N D S W + N + G +K+L D
Sbjct: 130 QNQADTLKASARYNSDMASSRYSGLWAREGNTFLNALSGEEKLLDGGGTALDLHDVRLYH 189
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQKF 240
+D ++ A +A + + L++V + + + + +
Sbjct: 190 LDPSGRMQQLTYASVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQLNPAALAAG 249
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S +++ + + + + N E Q++ P+ ++A+ + A S R
Sbjct: 250 LAKPRNLSAHDLEQSIEY-RRRNGLDARDYEDQYWSRWFYPVNVLALCMAAIPFSFGSLR 308
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + GI + + + L A +P ++ + +S + ++
Sbjct: 309 SGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFRRR 366
>gi|319793490|ref|YP_004155130.1| permease yjgp/yjgq family protein [Variovorax paradoxus EPS]
gi|315595953|gb|ADU37019.1| permease YjgP/YjgQ family protein [Variovorax paradoxus EPS]
Length = 369
Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 125/361 (34%), Gaps = 20/361 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN--YSISRGAVLAATRVPLIIQ 64
R + LK + LG + L F D + +G+ + Y + + VP +
Sbjct: 6 RLIYVEALKAVAFVTLGFLCLFFFFDFVDELQSVGKPESLAYGPMQALIYVTLLVPSHLY 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ I V L ++SE I R G+ W+ L ++ + I T + + IA
Sbjct: 66 ELLPITVLIGCIFVMARLAQSSEYTILRTSGLGPWRALRTLLLLGVGFVILTFAIGDYIA 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ G L +++ + W++ + I + ++
Sbjct: 126 PLSERTGQLLKSRYQ-GTYSLVGNTGAWLKEKRDNVSYAVNVLSISRDGS-LKNARIFEF 183
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP-------IDKNSTTLNIPIKMDGF 237
D + + A I + L + + Y + ++ P +
Sbjct: 184 DANGYVSKQLVVKSARILDGHWALADIEKQDYDTRSAADKARIVTTEIPQMDWPTSLTAE 243
Query: 238 QK-----FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
++ ++ ++ I+ + + ++ R E +F+ + PL + M ++A
Sbjct: 244 MVSVALLRPDRMSTIDLFDYIRHLDANGQT----AQRYEIEFWRKVFYPLSCLVMVVLAL 299
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ R V G+ G + + + G P A P ++ +S+
Sbjct: 300 PFAYLHFRQAGITTYVFGGVMIGISFFLLNNVFGYLGNLSNWSPWLTAAAPGLIYSVMSL 359
Query: 353 L 353
Sbjct: 360 T 360
>gi|332707452|ref|ZP_08427501.1| putative permease [Lyngbya majuscula 3L]
gi|332353803|gb|EGJ33294.1| putative permease [Lyngbya majuscula 3L]
Length = 388
Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 59/363 (16%), Positives = 128/363 (35%), Gaps = 22/363 (6%)
Query: 1 MPG--ILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAAT 57
MPG ++ RY + L+ + L V + L E+ ++ E + +
Sbjct: 13 MPGLSVMDRYIVFELIPPLLFGIGAFSSLGVAIGTLFELVRKVTE-AGLPLGIALQVLLL 71
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++P I +P L+ ++ + L+ SEL+ R+ G+SI++L+ P VV S+L+ T
Sbjct: 72 QIPQFISYALPMSMLLAALMAYSRLSSDSELIAMRSFGVSIYRLVIPAVVVSLLVTSLTF 131
Query: 118 LVINPIATSGEKIGIDLIQQW--KDNGDKQKSDIIP--WMQISNPQQDIFIGAKK----I 169
+ + + + + K+ Q+ +I + ++ P K+
Sbjct: 132 VFNELVVPAANYQSKITLDKALKKERPSFQERNIFYPEYQKVKLPNGKKVNKIKRWFYAE 191
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDKNSTT 227
+ T + + + ++ A+ + Y +N
Sbjct: 192 QFDGKQMRGLTILDFSQTG-LEQIVTSESAVWNPTENLWDFLDGTIYIISPDASYRNILR 250
Query: 228 -----LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIP 281
L +P K + + + + ++++ S R + I P
Sbjct: 251 FQKQKLQLPRTPLDLAKKNRDYGEMNIAQSLERLEVLRHSGNAKKIRKLRIRIQQKISFP 310
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ + L+ AS+ R+ + + F Y + I + G I P+ AA
Sbjct: 311 FVCLVFGLVGASLGTRPQRTGK-ATSFGISVLVIFSYYLLGFITNALGLVNIFSPLMAAW 369
Query: 342 IPV 344
+P
Sbjct: 370 LPN 372
>gi|256829582|ref|YP_003158310.1| permease YjgP/YjgQ family protein [Desulfomicrobium baculatum DSM
4028]
gi|256578758|gb|ACU89894.1| permease YjgP/YjgQ family protein [Desulfomicrobium baculatum DSM
4028]
Length = 360
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 61/361 (16%), Positives = 130/361 (36%), Gaps = 15/361 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + L L + + IDL + + E +S R P I
Sbjct: 2 NLLTRYILRQNLFLLLLVCGIGLGIYVFIDLFDRLDNFLE-AGVGLSSVGAYFLYRTPFI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ QI P + L+ +V + R+ EL+ A +S + + ++ L + +
Sbjct: 61 LAQIFPAVFLIALMVQMGLMLRSRELLALEACSVSPGAVAKSVIWYALALCVAQLFFSEA 120
Query: 123 IATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ SG + + ++ +D +++ W + + + + + P + T
Sbjct: 121 LGVSGHRAAERIWNEEVRDRQIEKRQLSDLWFR----EGNRIVHMGSVTPAAGRGLELTV 176
Query: 182 ITI--DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS-TTLNIPIKMDGFQ 238
+ D I A + L V + K + L++ + F
Sbjct: 177 HVLEDDDAGSIREIIRAQEFTSAPEGWLLSGVTRTLPATFEVQKAAQMELDLRTDVSSFL 236
Query: 239 KFSEQ--FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S ++ ++ S + R +T ++ + ++ M LIA +V
Sbjct: 237 IVDPKTRLESLPLLQLGAEIKRLRDSGS-NIERLQTAWHMKLAYAGSVLVMALIALAV-- 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
S +I+ G+ + F Y + + S G+ G++ PV AA +++ LL
Sbjct: 294 -VSFFGSLFVIIPLGLVATFCYYGLFVLCASAGEKGLVPPVLAAWAANAFFTAVAGGWLL 352
Query: 357 Q 357
+
Sbjct: 353 R 353
>gi|326796830|ref|YP_004314650.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
gi|326547594|gb|ADZ92814.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
Length = 353
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 57/358 (15%), Positives = 140/358 (39%), Gaps = 15/358 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY L + + + L F + + ++ + +Y+ + + A R P+ +
Sbjct: 5 DRYIGSSVLWSFAAVIFVLLGLDFALTFIDQVKKVND--SYTTNALLQVLAYRAPIKFAE 62
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
IP +L+ ++ L TSEL + RA G+ IW++ +L+ + V + ++
Sbjct: 63 YIPVASLIGTLIGLGALASTSELTVIRATGVPIWRIGFAACKPILLISLIGVGISEYVSP 122
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ + + + + W++ + ++I A + D T
Sbjct: 123 YATQQADLIERLRGQSEGRFALTGGVWIK--SDGNFVYINAA---DREGVLYDIQIFT-- 175
Query: 186 KKNKIIHRKD-ADLAI-IYNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKMDGFQKF 240
+ + + A A + +++ +L++V E + I+ K + +K
Sbjct: 176 PNGQALEKIQKAKFARHLSDNQWRLEQVTETHFLGDRIETGYKETVPWTASLKPSHLFLA 235
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S++ + S E+ + S+ + + + +F+ ++P A+ ++A S R
Sbjct: 236 SQEPEALSLSELHQYQSYLTGQEL-NAGLYQLEFWTKSLMPFACFALVIVALSSVFGPLR 294
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S+ + G+ G M + + + P+ IP+ L ++ +L++ +K
Sbjct: 295 SSTMGGRIFSGVLIGIMFQNGLNLFGKMSLALSFSPLIGVAIPIALCFAIGLLLMSRK 352
>gi|225024724|ref|ZP_03713916.1| hypothetical protein EIKCOROL_01610 [Eikenella corrodens ATCC
23834]
gi|224942519|gb|EEG23728.1| hypothetical protein EIKCOROL_01610 [Eikenella corrodens ATCC
23834]
Length = 356
Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats.
Identities = 59/364 (16%), Positives = 130/364 (35%), Gaps = 18/364 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + TLY LL ++L ++ + +G+ NY++ + R+
Sbjct: 2 KLLTRYLIRRLGTATLYALLALVVLFSFFEVINAVDDVGD-GNYTVLTLILYVGMRLFGH 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++P L+ + L SE + R G S+ +++ +L G+ V +
Sbjct: 61 MYTLLPLAVLIGCLAALSQLASASEWTVIRTSGASLKRIIATVASVGLLAGLLGVALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A E+ L W + + I +++LP+
Sbjct: 121 VAPYMEQRAERLRLHAVQQTV-SLGGSGLWFRQGSDN----INVREMLPDG-RLLGIRIY 174
Query: 183 TIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDKNST-TLNIPIK-----MD 235
++ + A + N LK+V ++ P +
Sbjct: 175 RYNQHAALESAWQASEGRVNGNGTWTLKQVARTHIAAERTQTEQLASVEWPSDVGVELLG 234
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
++Q ++RS I + +SN T ++ ++ PL+ M L+A + +
Sbjct: 235 VLLVDTDQMSARSLKMYIDHL----QSNGQQTAAYATVWWRKLLYPLICTVMALVALAFT 290
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ SR + + GI G + + + + P AA++P + + ++
Sbjct: 291 PQSSRHGNIGVRLFLGICLGLAFHFAGLLSGYVAQLSSMPPFGAAILPGTVFAIAAAWLI 350
Query: 356 LQKE 359
++E
Sbjct: 351 RRQE 354
>gi|78049235|ref|YP_365410.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325925500|ref|ZP_08186891.1| putative permease [Xanthomonas perforans 91-118]
gi|78037665|emb|CAJ25410.1| putative YjgP/YjgQ family permease [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325544092|gb|EGD15484.1| putative permease [Xanthomonas perforans 91-118]
Length = 368
Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats.
Identities = 57/358 (15%), Positives = 120/358 (33%), Gaps = 9/358 (2%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L T L + L V +G+ +Y+ A VP +
Sbjct: 11 YVGRVVLFTVLLTWAVLLGLDLVNAFASEAKNIGQ-GSYTFGHAVAYVAYTVPRRAYTLF 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P ++ ++ L TSEL RA+G+S ++ V LL V+ I
Sbjct: 70 PTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPWA 129
Query: 128 EKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHI---WEDFTSIT 183
+ L + N D S W + + + G +K+L D
Sbjct: 130 QNQADTLKASARFNSDMASSRYAGLWAREGDTFLNALSGEEKLLDGGGTALDLHDVRLYH 189
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQKF 240
+D ++ A +A + + L++V + + + + +
Sbjct: 190 LDPSGRMQQLTYASVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQLNPAALAAG 249
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S +++ + + + + N E Q++ PL ++A+ + A S R
Sbjct: 250 LAKPRNLSAHDLEQSIEY-RRRNGLDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGSLR 308
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + GI + + + L A +P ++ + +S + ++
Sbjct: 309 SGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFRRR 366
>gi|170079022|ref|YP_001735660.1| permease, YjgP/YjgQ family protein [Synechococcus sp. PCC 7002]
gi|169886691|gb|ACB00405.1| permease, YjgP/YjgQ family protein [Synechococcus sp. PCC 7002]
Length = 373
Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats.
Identities = 66/371 (17%), Positives = 150/371 (40%), Gaps = 29/371 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILV-----FVIDLNEIQNQMGELPNYSISRGAVLAATR 58
+L RY L F LG + + DL + L + ++ A +
Sbjct: 10 VLDRYIIGE-LNLAFAFGLGLFSALGIAVGSLFDLLAQVRESRLLFDVALKVM----ALK 64
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P I +P L+ ++V+ L+ SE++ R++GIS+++L+ P ++ SIL T +
Sbjct: 65 MPEFIGFALPMAVLLATLIVYSRLSGDSEIIALRSLGISVYRLVLPALIFSILATAITFV 124
Query: 119 VINPIATSGEKIGIDLIQQ---WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+ + ++Q K + + I P N + +F A+ +
Sbjct: 125 FKDQVIPLANAQATQTLEQAFLQKQAPFRDEKIIYPEYGEDNVLKRLFYAAEF---DGQQ 181
Query: 176 WEDFTSITIDKKNKIIHRK---DADLAIIYNDKVKLKKVVEYQYG-------RIPIDKNS 225
+D T I D+ N +++ DA + ++ + + Y + D++
Sbjct: 182 MKDLTII--DRSNGSLNQIVTADAAGWDLARNQWNFQNGIIYFIDIDGSYRNVLRFDRHQ 239
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
L+ +++D E + + ++ ++ + + +F I P + +
Sbjct: 240 IQLSNELRVDEELPKHEDMSLAQLQQYMQTVAADPDRDEAWLRKLRVRFQEKISFPFICL 299
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
A+ ++ A++ L S + F Y + ++ S G +G L P+ AA +P +
Sbjct: 300 ALGVVGAAIGLRPQ-SAGKATGFGLCVGLIFGYYFLAFMISSVGVAGYLHPILAAWLPNL 358
Query: 346 LTISLSILILL 356
+ ++++ ++L
Sbjct: 359 IVMAIASGLVL 369
>gi|298492659|ref|YP_003722836.1| permease YjgP/YjgQ family protein ['Nostoc azollae' 0708]
gi|298234577|gb|ADI65713.1| permease YjgP/YjgQ family protein ['Nostoc azollae' 0708]
Length = 391
Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats.
Identities = 56/372 (15%), Positives = 133/372 (35%), Gaps = 18/372 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGELPNYSISRGAVLAATRVP 60
I+ RY L L+ + +V ID L E+ ++ E I+ + ++P
Sbjct: 18 FSIMDRYLAMQLLPLFLFGVGAFTSVVLAIDSLFELLRKVVE-SGLPINIALKVFILKLP 76
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P TL+ ++ + L+ SEL+ R G+S+++++ V+ S L+ T +
Sbjct: 77 YVMVYSFPMSTLLATLMTYSRLSSESELIALRGCGVSVYRMVLTAVLLSSLVTAMTYIFN 136
Query: 121 NPIATSGEKIGIDLIQQWKDN---GDKQKSDIIPWMQI--SNPQQDIFIGAKKILP---E 172
IA + ++Q + KQ + P + I ++ +
Sbjct: 137 EQIAPAANYEATRTLEQALKSDKPSFKQHNIYYPEYREVKEKDGSTTKILSRLFYADQFD 196
Query: 173 NHIWEDFTSITIDKKN-KIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNST 226
+ T I ++ I ++ Y R +
Sbjct: 197 GKQMQGLTIIDRSREGLNQILVSESAQWNASQKVWNFYNGTIYLVAPDRSYRNILRFEHQ 256
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLV 285
L +P + S + + + ++++ + R E + I P + +
Sbjct: 257 QLQLPRTPLNLAENSRDYGEMNISQALQQLEVERLAGNPQKIRKLEVRIQQKIAFPFVCI 316
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
L+ +++ R+ + + F Y ++++ + ++ IL P+ A +P
Sbjct: 317 IFGLVGSAMGTIPQRTGR-GTSFGISVIVIFSYYLLLSVSGALAQADILSPLIGAWLPNS 375
Query: 346 LTISLSILILLQ 357
+ + +L++
Sbjct: 376 FGLVTGLFLLMR 387
>gi|323345623|ref|ZP_08085846.1| hypothetical protein HMPREF0663_12382 [Prevotella oralis ATCC
33269]
gi|323093737|gb|EFZ36315.1| hypothetical protein HMPREF0663_12382 [Prevotella oralis ATCC
33269]
Length = 412
Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats.
Identities = 59/362 (16%), Positives = 125/362 (34%), Gaps = 18/362 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY K ++ T ++ +L + + V D NE ++ + + A +P
Sbjct: 52 IKRLDRYIIKKFIGTYIFSILLIIAIAIVFDFNENLSKFTQYHAPLHAIIFDYYANFIPY 111
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ A G+S +L+ P+++ +L+ + +
Sbjct: 112 YSNLFSPLFVFIAVIFFTSKLAGNSEIISMLAAGVSFRRLMRPYMISCVLISALSFYLSA 171
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G I + +++N +D + I + + F+
Sbjct: 172 YVIPHGTVIRQNFESLYRNNRKLTSADNV----QLQVGTGIIAYIQHYDDRSKRGYGFSL 227
Query: 182 ITIDKKNKIIH--RKDADLAIIYNDK--VKLKKVVEYQYGRIPI------DKNSTTLNIP 231
+K I H + I K ++ Q + +K++ P
Sbjct: 228 DKFQEKKLISHMTATEISYDTISESKYHWTVRNWKIRQLKGLREHITSGGEKDTLIQMEP 287
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + E F S + I K N+ + + +++ I +T+I
Sbjct: 288 TDLVYSKGQQETFTSPQLKDYISKQIDRGSGNV---VQYQVEYHKRIAASFASFILTIIG 344
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S R + + G+ F + T+ +F + P+ AA +P IL ++
Sbjct: 345 VSLSSRK-RKGGMGLYLGIGMGLSFGYILLQTVSSTFAINAGAPPMLAAWMPNILFAFIA 403
Query: 352 IL 353
Sbjct: 404 YF 405
>gi|253583478|ref|ZP_04860676.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
gi|251834050|gb|EES62613.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
Length = 362
Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats.
Identities = 56/364 (15%), Positives = 131/364 (35%), Gaps = 11/364 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY K ++K+ L+ + + V L ++ + + +S V T +P
Sbjct: 3 IKIIDRYISKNFIKSFFLSLIAFVGIFLVSQLFKVIRYVSD-GRFSADESIVYILTMIPK 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ + P L+ +++ ++ E++ + GIS +++ + S ++ I L+ +
Sbjct: 62 ILIDVAPLAVLLGSLMTVSSMASNLEVISLKTAGISFKRIVLFPIFISAVIAIIVFLIND 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++ + +++ N +G KI E E+
Sbjct: 122 SLYPYSVRKNREIKDGGNTRREMPVEKRNAFLRGENSNYVYLMG--KINRETGFGENIEI 179
Query: 182 ITIDKKNKIIHR-KDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMD 235
+ ++++ + R A LK Y + + T + D
Sbjct: 180 VDLNEEFNKVERIITAKEGRYNFTKKVWVLKDANIYNGKELKKAEEVKLFTEDKYDDEPD 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F S + + + E+ K + KS + P ++ + S+
Sbjct: 240 KFITKSVEPKTLTIKELKKSVREI-KSIGGDTRELLVEIGNRYSFPFSSFIISFLGLSLG 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ R I +A + G+ Y + ++ +G L P + IP I+ + + I +
Sbjct: 299 SRYVR-GASAISMALSVALGYGYYIVQASFEALSINGFLNPFISGWIPNIIFLGIGIYFM 357
Query: 356 LQKE 359
+ E
Sbjct: 358 YRAE 361
>gi|86607080|ref|YP_475843.1| YjgP/YjgQ family protein [Synechococcus sp. JA-3-3Ab]
gi|86555622|gb|ABD00580.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
JA-3-3Ab]
Length = 392
Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats.
Identities = 62/365 (16%), Positives = 127/365 (34%), Gaps = 22/365 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVF---VIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K ++ + G +++ + ++ + G P + +P
Sbjct: 31 LEFYLCKEMIRPFFLGVAGGTVMMLGNQLFIYADLLVKKGAPP----LTILHILLLNLPA 86
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ P L ++ + SE+ RA GI ++L P + +L+ +L
Sbjct: 87 ILVVTFPIAGLFATLLTLGRMGADSEITALRAAGIPYRKVLIPVLCIGLLVSGLALLTNE 146
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + L D D +++ D++ I P+ D
Sbjct: 147 VIVPETNQKVKTLNTNLILAQDALPFDSEEIVRV---DDDLWFHVGSIDPKTGWMRDLLI 203
Query: 182 ITIDKKNKIIH---RKDADLAIIYNDKVKLKKVVEYQYGR-----IPIDKNSTTLNIPIK 233
+ + + A A L+ VV +Y LNI K
Sbjct: 204 LDRKAETGHLRYPQVISAQTAHQVGQAWHLQDVVIRRYDERGRTYYEGQVAEMELNIVNK 263
Query: 234 MDGF---QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ G +K ++ + +E ++ + + R T+++ IPL L+
Sbjct: 264 LVGLVYAEKVPQEQRAAELWEQCQRYR-AEQRPSADVARCLTEYHLKFAIPLASFFAILV 322
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
AA + L+ R VA I F+ Y ++++ ++ G+ + P AA +P ++ +
Sbjct: 323 AAPLGLQTVRQTGRYGSVALAIVLVFIYYVLMSLGRAMGRVEHIDPWLAAWLPNMIFGGV 382
Query: 351 SILIL 355
+L
Sbjct: 383 GFSLL 387
>gi|319778586|ref|YP_004129499.1| Permease-like protein [Taylorella equigenitalis MCE9]
gi|317108610|gb|ADU91356.1| Permease-like protein [Taylorella equigenitalis MCE9]
Length = 384
Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats.
Identities = 56/345 (16%), Positives = 123/345 (35%), Gaps = 23/345 (6%)
Query: 31 IDLNEIQNQMGELPN-YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELV 89
E + ++ Y++ L A ++P + I+P L+ ++V NL + +ELV
Sbjct: 27 FTFFETIEEFDKINEIYTVWVMLALQAFQLPTRLYDILPIGLLIGSVVALANLAQRNELV 86
Query: 90 ISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDI 149
I R G+S +LL ++ + + L+ I ++ + I + +
Sbjct: 87 ILRVSGLSSRKLLFMLWWIALPIIVLATLLSEVITPWADQK-VSAINMAVLGKKSNQLNS 145
Query: 150 IPWMQI-SNPQQDIFIGAKKILPENHIWEDFTSITIDK-KNKIIHRKDADLAIIYNDKVK 207
W + + I + + I E+ N+ A+ + N++++
Sbjct: 146 GYWFREPVSSNTYRVINLTNLKNDGEI-ENIKVFEYSSIDNQFKRLLSAETGTLENNELE 204
Query: 208 LKKV----------VEYQYGRIPIDKNSTT-------LNIPIKMDGFQKFSEQFASRSFY 250
L V P+ K S + L + D + S
Sbjct: 205 LTNVVQTVSLVDINKILNDEHDPVLKVSNSNKLEKIKLKTSLTQDRLLATELKPDRMSTL 264
Query: 251 EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY 310
+++ + + ++ + HN + + + P L+ M +A + +R +
Sbjct: 265 KLLDYIDYLKENQLEHN-KHVVALWRKLSYPFALIVMITLATPLGFIQTRKGGVGAKIFI 323
Query: 311 GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
GI G + + + + + G L A +P I+ + L+I L
Sbjct: 324 GILLGIVFFMVNQLSLNMGMLSKLPAWITATLPNIIAMILAIYAL 368
>gi|91788271|ref|YP_549223.1| permease YjgP/YjgQ [Polaromonas sp. JS666]
gi|91697496|gb|ABE44325.1| permease YjgP/YjgQ [Polaromonas sp. JS666]
Length = 381
Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 63/374 (16%), Positives = 129/374 (34%), Gaps = 34/374 (9%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN-------YSISRGAVLAATRV 59
R + L LG + L F DL + +G+ Y I + A +
Sbjct: 6 RLIYGEVLTAIALVALGFLALFFFFDLVDELQYLGKNNGLSAAADIYQIRHALLYVALLI 65
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + +++P L+ I V L ++SE I R G+ W+ L +V + V
Sbjct: 66 PNHLYELLPISVLIGTIFVMARLAQSSEYTILRTSGLGPWRALRLLLVLGAAFVTLSFAV 125
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ +A + E+ L +++ W++ P + K++ P N +
Sbjct: 126 GDYVAPTSERAAQLLKARYQS--KITVGQTGAWLKEKQPYNSYVVNVKELTPNN-EMKGV 182
Query: 180 TSITIDKKNKIIHRKDADLAIIYND-KVKLKKVVEYQYGRIPID--------------KN 224
D K I+ A +A LK+ ++
Sbjct: 183 QIFEFDNKGLIVSTTQAPVAQFTGGDAWMLKQASRAEFDVPASPADISKPQNGARVSRTT 242
Query: 225 STTLNIPIKMDGFQKF-----SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
T P ++ E+ ++ + ++ ++ + ++ R E +F+ +
Sbjct: 243 LQTFRWPTEISAEMVSVALLKPERMSTLDLFNYVRHLNANGQT----AQRYEIEFWKKVF 298
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
PL + M ++A + RS V G+ G + + + G P A
Sbjct: 299 YPLSCLVMVMLALPFAYLHFRSGGIASYVFAGVMIGISFFLLNNVFGYIGNLRNWQPWLA 358
Query: 340 ALIPVILTISLSIL 353
A P ++ +++S+
Sbjct: 359 AATPGLMYMAVSLG 372
>gi|258405421|ref|YP_003198163.1| permease YjgP/YjgQ family protein [Desulfohalobium retbaense DSM
5692]
gi|257797648|gb|ACV68585.1| permease YjgP/YjgQ family protein [Desulfohalobium retbaense DSM
5692]
Length = 358
Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 130/358 (36%), Gaps = 16/358 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + L L L + + +ID+ + + + + A ++PLI+
Sbjct: 3 TLHRYLLRQNLYYLLLSLGAGIGIYLLIDIFDRLDDFVG-AQAGVEATVLYFAAKIPLIV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q++P + L+ + + R EL A GI + +L F+V ++ + +
Sbjct: 62 SQVLPAVFLLSLLAQLSIMRRQQELTALEAGGIPLSRLAVFFLVYAVFWSGLQLGFSEGL 121
Query: 124 ATSGEKIGIDLIQQ-WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
G++ + +Q + Q++ W + + + ++ P T
Sbjct: 122 GVVGQRKSEAIWEQDVHGHAPSQRTLRDVWFK----SEHFVVHMHRVTPRQKTGRKITVY 177
Query: 183 TIDKKNKIIHRKD-ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ--- 238
+D+ I A+ D L +V + L +P++ D
Sbjct: 178 VMDEDFSRIRTIHRAERFQQQTDSWVLSEVTSLKP-HAFTTSAQDRLPLPLQQDLADFLA 236
Query: 239 -KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ S S +++ +S +S + R T ++ + LV M L+A +
Sbjct: 237 VDPKAEPESLSLWQLGHLISELRQSGS-NVERLATTWHMKLAYGFSLVVMALLALGI--- 292
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
S S + + G+ F+ Y + + + G+ GI+ P + ++ L L
Sbjct: 293 VSASGNIYVNIPIGLTVIFVYYALFVLGGTLGEKGIVSPWIGGWLGNMVWGGAGALRL 350
>gi|166713423|ref|ZP_02244630.1| hypothetical protein Xoryp_18790 [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 368
Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 58/358 (16%), Positives = 121/358 (33%), Gaps = 9/358 (2%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L T L + L V +G+ +YS A VP +
Sbjct: 11 YVGRVVLSTVLLTWAVLLGLDLVNAFASEAKNIGQ-GSYSFGHAVAYVAYTVPRRAYTLF 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P ++ ++ L TSEL RA+G+S ++ V LL V+ I
Sbjct: 70 PTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAALALLTAIMVISGETIGPWA 129
Query: 128 EKIGIDLIQQWKDNGDKQKS-DIIPWMQISNPQQDIFIGAKKILPENHI---WEDFTSIT 183
+ L + N D S W + + + G +K+L D
Sbjct: 130 QNQADTLKTSARYNSDMAASLYAGLWAREGDTFLNALSGEEKLLDGGGTALDLHDVRLYH 189
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQKF 240
+D ++ A +A + L++V + + + + +
Sbjct: 190 LDSSGRMQQLTYASVAEHRDGHWTLRQVRRDTFQERSVQRETFPELPWQSLLNPAALAAG 249
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S +++ + + + ++ N E Q++ PL ++A+ + A S R
Sbjct: 250 LAKPRNLSAHDLEQSIEYRSR-NGLDARDYEEQYWSRWFYPLNVLALCMAAIPFSFGSLR 308
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + GI + + + L A +P ++ + +S+ + ++
Sbjct: 309 SGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSVWLFRRR 366
>gi|326565139|gb|EGE15330.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis 103P14B1]
gi|326572842|gb|EGE22827.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis CO72]
gi|326574664|gb|EGE24600.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis 101P30B1]
Length = 369
Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 61/373 (16%), Positives = 139/373 (37%), Gaps = 28/373 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y + L ++G ++ V + + E Y+++ + R P +
Sbjct: 5 ILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNISE--TYTLTDALLFILYRSPYFL 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q IP TL+ ++ L SEL++ RA G+SI+++++ ++ +++ ++ V +
Sbjct: 63 VQFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGVNQFV 122
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + DK + W + + E +
Sbjct: 123 LPTANQYATAIRAD--TIYDKLITIDGYWSVNHDGDSQDVVYISYADNEGG-LGEVKRYQ 179
Query: 184 IDKKNKIIHRKDADLAIIYNDK------------VKLKKVVEYQYGRIPIDKNSTTLNI- 230
+ K ++I A + +L + E G + + + I
Sbjct: 180 L-KDGQLIAALKAKSGVYLPQSDDVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKIL 238
Query: 231 -----PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
P + K E + S Y + M+ ++ R E F+ ++ P ++
Sbjct: 239 TLPIAPTDVYLLTKEPEDLSLSSLYAHRQLMAHQGTRSL----RHELAFWQKLLSPFAVL 294
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++ L+A+S RS + V + +G + + + + L P+ AL+P++
Sbjct: 295 SLVLVASSFVFGSLRSQGLGLRVVLALLTGLLFSYLTDLTGFVALATGLSPLLMALVPIV 354
Query: 346 LTISLSILILLQK 358
L+ + +L +K
Sbjct: 355 LSAMAGMYLLNRK 367
>gi|268317250|ref|YP_003290969.1| permease YjgP/YjgQ family protein [Rhodothermus marinus DSM 4252]
gi|262334784|gb|ACY48581.1| permease YjgP/YjgQ family protein [Rhodothermus marinus DSM 4252]
Length = 361
Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 48/361 (13%), Positives = 134/361 (37%), Gaps = 10/361 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ R+ + L L+F ++ V+ E + + V + +P I+
Sbjct: 3 LIDRHIVRRLLLGYLFFTGALIVFFIVLHYVEYIDDFMDRGASMREVFLVYYPSYIPEIV 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P + + V + + E+V + G+S+++LL P V ++++ F +
Sbjct: 63 RLTSPLALFLACLYVTGRMAQGLEIVALQMSGVSLYRLLRPCVALALIVTGFMFWFNGWV 122
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ +Q D+ + + P Q F+ E I
Sbjct: 123 VPVTNRTVVAFDEKYLSKTPRQ-FDLSHLHRQARPGQ--FLSVGYYDRERRIAYRIALQQ 179
Query: 184 IDKKNKIIHRKDADLAIIYN--DKVKLKK--VVEYQYGRIPIDKN--STTLNIPIKMDGF 237
+ ++ +R DA + + + ++ + + L++P+
Sbjct: 180 FAEGRRLAYRLDAPRMEWNDSLQAWVVPEGIARHFEPDGREVRRPVRRQQLDLPLYPRDL 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + + + ++ +S H R +Y P + + LI ++
Sbjct: 240 ARTEREVEAMTLPDAAAHLAALRRSGAGHLGRPLVAYYSKFAYPFANLILVLIGVPLA-S 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + G+ F + +++ FG + L P+ A +P ++ ++ +++++ +
Sbjct: 299 VRRRGGQAVQIGIGLGVAFAYLALQKLIEPFGYTETLPPLLVAWLPHLVFLAGALVLVAR 358
Query: 358 K 358
Sbjct: 359 T 359
>gi|312142844|ref|YP_003994290.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
gi|311903495|gb|ADQ13936.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
Length = 1063
Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 59/347 (17%), Positives = 129/347 (37%), Gaps = 12/347 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ +Y K L + I++ + + + + N S L R+P +
Sbjct: 4 KLMDKYILKEVSYPFLLGVFIITIILVGSYFFHLADLI-IVKNVPFSLVFRLLLYRLPGV 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + P L + LNR +E+ R G+SI++L+ P + +L+ FT L+
Sbjct: 63 MVETFPIAVLFATMTAINRLNRENEITALRMGGVSIFRLVLPLFILGLLISSFTFLLNEN 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I ++I+Q + + Q P+ +F + ++
Sbjct: 123 IVPWTNHQAQNIIRQTILKDAMPDPESEVFFQ--GPRGRLF-YVSSYNQSSGELKNIVIY 179
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-----IPIDKNSTTLNIPIKMDGF 237
+ + + A ++ ++ L + +QY + + N + + +M
Sbjct: 180 QLASEAEFPEVITAVDGLVEDNAWLLNTGIIHQYNQGGEIILESKFNQMEIELTDQMREV 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ A S E+ +++ +S ++ + PL A+ I S+ L
Sbjct: 240 MGTQKSTAEMSRGELGRRIELFRRSG-IGVNSLLVDYHLKLAEPLA--ALLFILISLPLS 296
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
S I F+ Y +++ +SFG++ +L P+ AA +P
Sbjct: 297 LSSKESSTWNFILTIIIVFLYYVVLSFSRSFGRNEVLSPLLAAWLPN 343
>gi|294625210|ref|ZP_06703851.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294664572|ref|ZP_06729914.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292600484|gb|EFF44580.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605656|gb|EFF48965.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 368
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 56/358 (15%), Positives = 120/358 (33%), Gaps = 9/358 (2%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L T L + L V +G+ +Y+ A VP +
Sbjct: 11 YVGRVVLFTVLLTWAVLLGLDLVNAFASEAKNIGQ-GSYTFGHAVAYVAYTVPRRAYTLF 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P ++ ++ L TSEL RA+G+S ++ V LL V+ I
Sbjct: 70 PTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPWA 129
Query: 128 EKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHI---WEDFTSIT 183
+ L + N + S W + + + G +K+L D
Sbjct: 130 QNQADTLKASARYNSNMASSRYAGLWAREGDTFLNALSGEEKLLDGGGTALDLHDVRLYH 189
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQKF 240
+D ++ A +A + + L++V + + + + +
Sbjct: 190 LDSSGRMQQLTYASVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQLNPAALAAG 249
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S +++ + + + + N E Q++ PL ++A+ + A S R
Sbjct: 250 LAKPRNLSAHDLEQSIEY-RRRNGLDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGSLR 308
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + GI + + + L A +P ++ + +S + ++
Sbjct: 309 SGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFRRR 366
>gi|255020900|ref|ZP_05292956.1| hypothetical protein ACA_1122 [Acidithiobacillus caldus ATCC 51756]
gi|254969691|gb|EET27197.1| hypothetical protein ACA_1122 [Acidithiobacillus caldus ATCC 51756]
Length = 357
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 59/357 (16%), Positives = 125/357 (35%), Gaps = 17/357 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
R F+ L + L + L+FV +L G ++ + + + ++P +
Sbjct: 5 DRLLFRGMLGYSTLVLFVLLALMFVANLIAKSGGPGH-GSWDMGKLVTYISLQLPDLAYN 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+IP L+ ++ LN SELV R G S+W+L P + + + T + +
Sbjct: 64 LIPLALLLGALIWVSLLNSHSELVALRMSGWSLWRLQRPLLWVGLWGALLTFALGEWVVP 123
Query: 126 SGEKIGIDLIQQ-WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + +G + D W++ D I + I + E +
Sbjct: 124 YTAPAAEAIWANGGQGSGFQALPDGGVWLRQ----GDQLIQIRAIAADGRRLEGLRIVIT 179
Query: 185 DKKNKIIHR-KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN------IPIKMDGF 237
+ R DA A+ + +L+ V + G I + P + F
Sbjct: 180 TPSLDAVTRMLDAREALYRDGAWQLQGVQSHVLGAQRIVSTTLVQQPWDVRLDPGTLRSF 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + +E + + + ++ R F+ + P + + M + +
Sbjct: 240 SHPTRTMTLPALWESYQNL----QGSVLSMNRFALAFWKRVTYPWVGLVMIWLVVPLVTR 295
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + G+ G + + + SG + PV A + P+ L S++ +
Sbjct: 296 NPRGGGLAGRILMGLVLGLAFHFLTEMSGFISISGGIPPVFATVFPLALFASIAWGL 352
>gi|325919211|ref|ZP_08181260.1| putative permease [Xanthomonas gardneri ATCC 19865]
gi|325550311|gb|EGD21116.1| putative permease [Xanthomonas gardneri ATCC 19865]
Length = 368
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 60/365 (16%), Positives = 121/365 (33%), Gaps = 9/365 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP + Y + L T L + L V +G+ +Y+ A VP
Sbjct: 4 MPRVHDWYVGRAVLFTVLLTWAVLLGLDLVNAFASEAKNIGQ-GSYTFGHAFAYVAYTVP 62
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P ++ ++ L TSEL RA+G+S ++ V LL V+
Sbjct: 63 RRAYTLFPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTAGMVISG 122
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHI---W 176
+ + L + N D + W + + + G +K+L
Sbjct: 123 ETVGPWAQNQADTLKTSARYNSDMAMARYSGLWAREGDTFLNALSGEEKLLDGGGTALDL 182
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIK 233
D +D ++ A LA N L++V + + + + +
Sbjct: 183 HDVRLYHLDASGRLQQLTYAALAENRNGAWTLRQVRRDTFQERSVQRETFPELPWQSQLS 242
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + S ++ + + + + N E Q++ PL ++A+ L A
Sbjct: 243 PAALAAGLAKPRNLSARDLEQSIEY-RRRNGLDARDYEDQYWSRWFYPLNVLALCLAAIP 301
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S RS + GI + + + L A +P ++ + +S
Sbjct: 302 FSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAW 361
Query: 354 ILLQK 358
+ ++
Sbjct: 362 LFRRR 366
>gi|73542370|ref|YP_296890.1| permease YjgP/YjgQ [Ralstonia eutropha JMP134]
gi|72119783|gb|AAZ62046.1| permease YjgP/YjgQ [Ralstonia eutropha JMP134]
Length = 383
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 60/364 (16%), Positives = 117/364 (32%), Gaps = 34/364 (9%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYF + ++ L + L DL + Y+ V + P I ++
Sbjct: 9 RYFARQVYGVFVFILFAVLSLFVFFDLLSELENV--NGKYTSLIAFVHVLLQAPTRIYEV 66
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I VF L SE I R G++ Q L ++ L + T + I
Sbjct: 67 LPIAVLISAIYVFSQLASQSEYTIFRVAGLNTRQALFSLFKLAVPLALITFIFGEFIGPR 126
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-----QDIFIGAKKILPENHIWEDFTS 181
E+ + + W++ + F+ + P+ I T
Sbjct: 127 AEQFAQKIKLEAIGATVSSGFRSGVWVKDRDKDPAGGEITRFVNVAGLRPDQTI-TGITV 185
Query: 182 ITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDKNST-------------- 226
D + ++ + L V E ++ + ++
Sbjct: 186 YEFDAQYRLRVIRVVKEGRYQGAQSWLLSDVNETRFSELRQPGTASRDGLAPEFRAEQVR 245
Query: 227 -------TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
+ P + E+ ++ + I+ + + + R E F+ +V
Sbjct: 246 FPSVTMHSELTPQILSVLLVTPERMSTLDLFRYIRHLRDNKQ----DTQRYEIAFWKKVV 301
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
PL L M +A + +R+ + V GI G + T+ G P+ +
Sbjct: 302 YPLTLFVMMALALPFAYLHARAGAVGVKVFGGIMLGLSFHLSNTLFSHVGLLHTWPPIVS 361
Query: 340 ALIP 343
AL+P
Sbjct: 362 ALVP 365
>gi|262376977|ref|ZP_06070203.1| permease YjgP/YjgQ family protein [Acinetobacter lwoffii SH145]
gi|262308015|gb|EEY89152.1| permease YjgP/YjgQ family protein [Acinetobacter lwoffii SH145]
Length = 356
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 52/359 (14%), Positives = 129/359 (35%), Gaps = 21/359 (5%)
Query: 7 RYFFKYYLKTTLYFLLGA-MILVFVIDLNEIQNQMGEL-PNYSISRGAVLAATRVPLIIQ 64
R K+ +TT +LGA +L + L ++G L Y P +
Sbjct: 5 RIVAKHVTQTTALAMLGATAVLAGLQVLFTYLGELGSLKDGYGAWDALKYVLWGAPNYLY 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+I+P L+ ++ L SEL++ R++G+S+W+++ + ++LL + + + +
Sbjct: 65 EILPISALIGAVLGLGTLASNSELIVMRSVGVSLWRIVGWVIRSALLLVVLSFALSEWVI 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + W + + FI + ++ +
Sbjct: 125 PYTNEQAKSVKSA--SKAAQLGEVRGYWTR----EGQRFIYIDYANSQGQ-LKNVQMLDF 177
Query: 185 DKKNKIIHRKDADLAII-YNDKVKLKKVVEYQY----GRIPIDKNSTTLNIPIKMDGFQK 239
D+ ++ AD + L ++ + + L + ++
Sbjct: 178 DQNYRLRGTLQADQGQFVKDGSWTLDNTEQFDILQNGNATLVKQQQQPLALALQPKYVHM 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S +++ MS+ ++ + + F+ + P L+A+ +IA S
Sbjct: 238 VTIDPEDLSPSQLVSFMSYMHEYSQVPKT-YQLAFWQKLGSPFALIALVVIACSFIFGPL 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL---IPVILTISLSILIL 355
R + +F+G + + G + ++ + A IP+++ + +L
Sbjct: 297 RQQSMGFRLVIALFAGLGFFYLQDF---LGYASLIYAPSPAWFVFIPILIMFGIGGYLL 352
>gi|86609743|ref|YP_478505.1| YjgP/YjgQ permease [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558285|gb|ABD03242.1| putative permease, YjgP/YjgQ family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 362
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 60/362 (16%), Positives = 130/362 (35%), Gaps = 22/362 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVF---VIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
Y FK ++ + G +++ + ++ + G P + +P I+
Sbjct: 4 YLFKEMIRPFFLGVAGGTVMMLGNQLFIYTDLLVKKGAPP----LTILHILLLNLPAILV 59
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
P L ++ + SE+ RA GI ++ P + +L+ +L I
Sbjct: 60 VTFPIAGLFTTLLTLGKMGADSEITALRAAGIPYRKVFIPVLCIGLLISGLALLTNEVIV 119
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ L + D + +++ D++ I P+ + +D +
Sbjct: 120 PETNQKVKILNKNLILAQDALLFNPEEIVRV---DDDLWFHVGSIDPKTGLMQDLLILDR 176
Query: 185 DKKNKIIH---RKDADLAIIYNDKVKLKKVVEYQYGRI-----PIDKNSTTLNIPIKMDG 236
+ + A A +L+ VV +Y LNI K+ G
Sbjct: 177 KAETGHLRYPQVISAQTAQQVGQSWQLRDVVIRRYDEQGRTYYEGQVEEMQLNIVNKLVG 236
Query: 237 F---QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+K ++ + +E ++ + + R T+++ IPL L+AA
Sbjct: 237 LVYAEKVPQEQRAGELWEQCQRYR-AEQRPSADVARCLTEYHLKFAIPLASFFAILVAAP 295
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ L+ R VA I F+ Y ++++ ++ G+ + P AA +P ++ +
Sbjct: 296 LGLQTVRQTGRYGGVALAIVLVFIYYVLMSLGRAMGRVEHIDPWLAAWLPNMIFGGVGFS 355
Query: 354 IL 355
+L
Sbjct: 356 LL 357
>gi|325269119|ref|ZP_08135739.1| hypothetical protein HMPREF9141_0948 [Prevotella multiformis DSM
16608]
gi|324988506|gb|EGC20469.1| hypothetical protein HMPREF9141_0948 [Prevotella multiformis DSM
16608]
Length = 405
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 62/367 (16%), Positives = 129/367 (35%), Gaps = 20/367 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
GIL Y + ++ T +Y +L + + V D NE ++ + + A +P
Sbjct: 45 IGILDWYIIRKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIVFDYYANFIPY 104
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ A G+SI +L+ P+++ +L+ T + +
Sbjct: 105 YSNLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSIKRLMRPYMISCVLIAGLTFYLNS 164
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G I + ++++ ++ + ++ + + F+
Sbjct: 165 FVIPHGTVIRQNFESLYRNSKKNTSAENV----QLYVSKNTTAYIQHYDNQYKRGYGFSL 220
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-----VKLKKVVEYQYGRIPI------DKNSTTLNI 230
+ I K KI+ A +L + K++ L
Sbjct: 221 VKI-KDKKIVSHMTAMEIQYDTVADTKFHWRLSNWKTRTLKGLKEHIQSGASKDTVLLME 279
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P + + E F S + I K + N+ + E +F+ I + +T+I
Sbjct: 280 PTDLVYSKGQQETFTSPELLDYISKQTSRGSGNV---VQYEVEFHKRIAMSFSSFILTII 336
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
S+S R + + G+ F + T+ +F P+ AA IP I+ +
Sbjct: 337 GLSLSSRK-RKGGMGLYLGIGLALSFSYIMLQTVSSTFAIQSDTPPLLAAWIPNIIFAVI 395
Query: 351 SILILLQ 357
+
Sbjct: 396 AYFCYRH 402
>gi|21244279|ref|NP_643861.1| hypothetical protein XAC3554 [Xanthomonas axonopodis pv. citri str.
306]
gi|21109927|gb|AAM38397.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 368
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 58/358 (16%), Positives = 121/358 (33%), Gaps = 9/358 (2%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L T L + L V L +G+ +Y+ A VP +
Sbjct: 11 YVGRVVLFTVLLTWAVLLGLDLVNALASEAKNIGQ-GSYTFGHAVAYVAYTVPRRAYTLF 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P ++ ++ L TSEL RA+G+S ++ V LL V+ I
Sbjct: 70 PTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPWA 129
Query: 128 EKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILPENHI---WEDFTSIT 183
+ L + N D S W + + + G +K+L D
Sbjct: 130 QNQADTLKASARYNSDMASSRYAGLWAREGDTFLNALSGEEKLLDGGGTALDLHDVRLYH 189
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQKF 240
+D ++ A +A + + L++V + + + + +
Sbjct: 190 LDSSGRMQQLTYASVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQLNPAALAAG 249
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S +++ + + + + N E Q++ PL ++A+ + A S R
Sbjct: 250 LAKPRNLSAHDLEQSIEY-RRRNGLDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGSLR 308
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + GI + + + L A +P ++ + +S + ++
Sbjct: 309 SGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFRRR 366
>gi|257468008|ref|ZP_05632104.1| hypothetical protein FulcA4_01652 [Fusobacterium ulcerans ATCC
49185]
gi|317062294|ref|ZP_07926779.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
gi|313687970|gb|EFS24805.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
Length = 362
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 51/364 (14%), Positives = 131/364 (35%), Gaps = 11/364 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y K ++K+ L+ + + V L ++ + + +S + T +P
Sbjct: 3 IKIIDKYISKNFIKSFFLSLIAFVGIFLVSQLFKVIRYVSD-GRFSANESITYILTMIPK 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ + P L+ +++ ++ E++ + GIS +++ + S ++ + + +
Sbjct: 62 ILIDVAPLAVLLGSLMTVSSMASNLEIISLKTAGISFKRIVLFPICISAVIAVMVFYIND 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++ + + +++ N +G KI E E+
Sbjct: 122 SLYPYSVRKNREIKDGERAKREMPVEKKNAFLRGENSNYVYLMG--KINRETGFGENIEI 179
Query: 182 ITIDKKNKIIHR-KDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNSTTLNIPI---KMD 235
+ ++++ + R A LK Y ++ K + +
Sbjct: 180 VDLNEEFNKVERIITAKEGRYNFSKKVWVLKDANIYDGEKLEKPKEVKIFTENKYDDEPE 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F S + + + E+ K + KS + P ++ + S+
Sbjct: 240 KFITKSVEPKTLTIKELKKSVREI-KSIGGDTRELLVEIGNRYSFPFSSFIISFLGLSLG 298
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ R I +A + G+ Y + ++ +G L P + IP I+ + + I +
Sbjct: 299 SRYVR-GASAISMALSVALGYGYYIVQASFEALSINGFLNPFISGWIPNIIFLGIGIYFM 357
Query: 356 LQKE 359
+ E
Sbjct: 358 YRAE 361
>gi|58580459|ref|YP_199475.1| hypothetical protein XOO0836 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58425053|gb|AAW74090.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 396
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 60/357 (16%), Positives = 120/357 (33%), Gaps = 7/357 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L T L + L V +G+ +Y+ A VP +
Sbjct: 39 YVGRVVLSTVLLTWAVLLGLDLVNAFASEAKDIGQ-GSYTFGHAVAYVAYTVPRRAYTLF 97
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P ++ ++ L TSEL RA+G+S ++ V LL V+ I
Sbjct: 98 PTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPWA 157
Query: 128 EKIGIDLIQQWKDNGDKQKS-DIIPWMQISNPQQDIFIGAKKILPENHI---WEDFTSIT 183
+ L + N D S W + + + G +K+L D
Sbjct: 158 QNQADTLKASARYNSDMAASLYAGLWAREGDTFLNALSGEEKLLDGGDTALDLHDVRLYH 217
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST-TLNIPIKMDGFQKFSE 242
+D ++ A +A + + L++V + + + + L +++ +
Sbjct: 218 LDSSGRMQQLTYASVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQLNPAALAAG 277
Query: 243 QFASRSFYEIIKKMSFSNKS-NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
R+ + S +S N E Q++ PL ++A+ + A S RS
Sbjct: 278 LAKPRNLSAHDLEQSIEYRSRNGLDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGSLRS 337
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ GI + + + L A +P ++ + +S + ++
Sbjct: 338 GGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFRRR 394
>gi|332524895|ref|ZP_08401082.1| hypothetical protein RBXJA2T_03768 [Rubrivivax benzoatilyticus JA2]
gi|332108191|gb|EGJ09415.1| hypothetical protein RBXJA2T_03768 [Rubrivivax benzoatilyticus JA2]
Length = 370
Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 59/365 (16%), Positives = 123/365 (33%), Gaps = 27/365 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R ++ + + ++ L + L F IDL E +G + + A +P ++
Sbjct: 6 RLLYRDIVASVVFVALAFLSLFFFIDLVEKMGNVGR-AGRTTGVAVMSALLELPGHFYEL 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I L ++SE I R G+ + L+ V ++ G T V + +
Sbjct: 65 MPIAVLIGTIYSLARLAQSSEFTILRTGGLGPGRALSLLAVLGVVFGAITFAVGDYVVPV 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQIS----NPQQDIFIGAKKILPENHIWEDFTSI 182
E+ + + G + W++ ++ + P+
Sbjct: 125 AERKAVAVKALAA--GGMRVGRTGAWLKEKRMTPEGERSYSVNLAGTTPDG-RLSGIRIF 181
Query: 183 TIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQ-------------YGRIPIDKNSTTL 228
D ++ R A + + L + + R+P + ++TL
Sbjct: 182 EFDADGRLSVRIAAKTGTVAADGTWTLSEAEVTRWPDVRLREPAGVVEQRLPELRWASTL 241
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
P + E + + +S ++ E F+ + PL + MT
Sbjct: 242 -TPEVVAAAVMPRETMTTADLWRYSVHLSDQAQA----TQSYEILFWKKALYPLACLVMT 296
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+A + +R+ + V GI G + + G P AA P +L +
Sbjct: 297 ALALPFAYLHARAGSVSLKVFGGIMLGISFVLLNNLAGHVGLLRDWTPWIAAATPSLLYL 356
Query: 349 SLSIL 353
+S+
Sbjct: 357 LMSLA 361
>gi|329907054|ref|ZP_08274546.1| putative Membrane protein; putative permease [Oxalobacteraceae
bacterium IMCC9480]
gi|327547111|gb|EGF31985.1| putative Membrane protein; putative permease [Oxalobacteraceae
bacterium IMCC9480]
Length = 378
Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 67/372 (18%), Positives = 124/372 (33%), Gaps = 22/372 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L +YF K L+ L+ LL + L DL +G Y I + A +P
Sbjct: 3 VLQKYFGKEILRAVLFVLLAFLALFAFFDLINELPAVGR-GGYKIQHAFLYIALGLPGYT 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P L+ +I V + SE I R G+S Q ++ + T L I
Sbjct: 62 YELMPIAALIGSIYVLAQMASNSEFTIMRVSGLSTRQAGFMLAKIGLIFVLITFLFGEVI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE----NHIWEDF 179
+ + L QQ + K+ + IG++ + N +D
Sbjct: 122 SPLTAERAERLKQQAQGTTSKEFRSGLWTKDQIRDGSGAMIGSRFVNVGELLPNGQLKDV 181
Query: 180 TSITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQY---------------GRIPIDK 223
D + ++ A A + + L V ++ G
Sbjct: 182 KLYEFDSELRLTSMVTASTADFQGDRRWLLSDVATTRFALTVFNLAVLPDAPSGIATTTA 241
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ L I D S ++ ++ R + F+ I+ P
Sbjct: 242 PTRELISDITPDILSVTFADPDRMSALDLATYTRHLAENRQV-TERYDIAFWKKIIYPFA 300
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M +A + +RS + + GI G I ++ G P+A A+ P
Sbjct: 301 VFVMMALALPFAYLHARSGGVSLKIFMGIMIGVSFKLINSLFSHIGLLNTWPPLATAIAP 360
Query: 344 VILTISLSILIL 355
+L ++ ++ L
Sbjct: 361 SLLFLAGALGAL 372
>gi|84622419|ref|YP_449791.1| hypothetical protein XOO_0762 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188578606|ref|YP_001915535.1| putative permease, YjgP/YjgQ family [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|84366359|dbj|BAE67517.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188523058|gb|ACD61003.1| putative permease, YjgP/YjgQ family [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 368
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 60/357 (16%), Positives = 120/357 (33%), Gaps = 7/357 (1%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L T L + L V +G+ +Y+ A VP +
Sbjct: 11 YVGRVVLSTVLLTWAVLLGLDLVNAFASEAKDIGQ-GSYTFGHAVAYVAYTVPRRAYTLF 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P ++ ++ L TSEL RA+G+S ++ V LL V+ I
Sbjct: 70 PTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPWA 129
Query: 128 EKIGIDLIQQWKDNGDKQKS-DIIPWMQISNPQQDIFIGAKKILPENHI---WEDFTSIT 183
+ L + N D S W + + + G +K+L D
Sbjct: 130 QNQADTLKASARYNSDMAASLYAGLWAREGDTFLNALSGEEKLLDGGDTALDLHDVRLYH 189
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST-TLNIPIKMDGFQKFSE 242
+D ++ A +A + + L++V + + + + L +++ +
Sbjct: 190 LDSSGRMQQLTYASVAEHRDGRWTLRQVRRDTFQERSVQRETFPELPWQSQLNPAALAAG 249
Query: 243 QFASRSFYEIIKKMSFSNKS-NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
R+ + S +S N E Q++ PL ++A+ + A S RS
Sbjct: 250 LAKPRNLSAHDLEQSIEYRSRNGLDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGSLRS 309
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ GI + + + L A +P ++ + +S + ++
Sbjct: 310 GGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFRRR 366
>gi|224539916|ref|ZP_03680455.1| hypothetical protein BACCELL_04827 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518470|gb|EEF87575.1| hypothetical protein BACCELL_04827 [Bacteroides cellulosilyticus
DSM 14838]
Length = 391
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 54/359 (15%), Positives = 124/359 (34%), Gaps = 12/359 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T ++ + + + V D NE ++ + +P
Sbjct: 33 LKRLDFYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWKAIIFDYYLNFIPY 92
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S ++L P++V + ++ I T + +
Sbjct: 93 FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAIVTFFLGS 152
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I G I+ ++ + I + ++ + F+
Sbjct: 153 YIIPQGSVTRINFEDKYYKQRKSNTARNI----QLEVDSGVIAYIERFEDYSKTGYRFSL 208
Query: 182 ITIDKKNKIIHRKDADLAIIYN---DKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMD 235
K +++ A K +K + + + + + + ++
Sbjct: 209 DKF-KDKQLVSHLTARSITYDTASVHKWIIKDYMIREMDGMKENIVKGDRIDSTLFMEPA 267
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F Q + ++ + +S + + E +++ I + +TLI S+S
Sbjct: 268 DFLIMKNQQEMMTSPQLSEYISRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSLS 327
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ ++ + + G+ F TI +F +G + PV A IP IL ++ +
Sbjct: 328 SKKTK-GGMGLHLGIGLALSFSYILFQTIASTFAVNGNVPPVIAVWIPNILYAFIAFYL 385
>gi|313159015|gb|EFR58390.1| permease, YjgP/YjgQ family [Alistipes sp. HGB5]
Length = 367
Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats.
Identities = 53/361 (14%), Positives = 128/361 (35%), Gaps = 15/361 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY +L T + + +I+V + D E + EL +P
Sbjct: 8 FKILDRYILGKFLATYFFAIAMIIIVVVLFDYVEKIDDFTELHAPLRDVIFDYYLNFIPF 67
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I Q T + I + +E+V + G+S +L+ P+ +G++++G ++ +
Sbjct: 68 FINQFSGLFTFIACIFFTSKMAYQTEIVAMLSGGMSFRRLMWPYFLGALIIGSLSLTLNL 127
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ ++ Q+ K + + P +I + +
Sbjct: 128 WLIPISQRHIVNFESQYIKRKQNNKFNR-HIYRQIEPGTFAYIRGYNDASQ-----QASF 181
Query: 182 ITIDK--KNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDK----NSTTLNIPIK 233
+ ++ + +A + + + ++ + ++K + I ++
Sbjct: 182 LALEHYYSGTMTRSLEASDVKFNPETKCWTAPRYTKREFDSLGVEKFEQFRNLDTLINLE 241
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + ++ + + E+ + + E + + PL +TLI S
Sbjct: 242 VTELGEINDLIQTMNITELNEFLDQQRAKGSDAINIIEVEKHARFAYPLSTFILTLIGVS 301
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S R + + G F + F KSG L P A +P I+ + +++
Sbjct: 302 LSSRKVR-GGTGLHIGIGTGLCFSYILFNRFFEEFAKSGTLPPGLAVWLPNIIYLFIAVY 360
Query: 354 I 354
+
Sbjct: 361 L 361
>gi|17547136|ref|NP_520538.1| hypothetical protein RSc2417 [Ralstonia solanacearum GMI1000]
gi|17429438|emb|CAD16124.1| putative permease transmembrane protein [Ralstonia solanacearum
GMI1000]
Length = 401
Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats.
Identities = 58/406 (14%), Positives = 127/406 (31%), Gaps = 54/406 (13%)
Query: 1 MPGIL-----WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLA 55
M IL +YF + ++ L + L D+ + + Y+
Sbjct: 1 MMKILKMQVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSV--VGRYTTLIAFFHV 58
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
+ P + ++IP L+ I VF + SE I R G+ + L ++ L +
Sbjct: 59 MLQAPTRVYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALV 118
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP--------QQDIFIGAK 167
T + I E+ + + W++ P + F+
Sbjct: 119 TYVFGEFIGPKSEQFAQKVRLEALGATVSSGFRSGVWVKDRGPARPDGSGGEVTRFVNVG 178
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNST 226
+ P I + D ++ + A A + +L V E ++ P +
Sbjct: 179 TLQPNQTI-QGLRIYEFDANYRLSSIRVAQQARYQGHQHWELNDVTETRFIEFPRHAGAA 237
Query: 227 TLN---------------------------------IPIKMDGFQKFSEQFASRSFYEII 253
T P + ++ A+ ++ I
Sbjct: 238 TPQDSKQAVPGAPDALAPDFRGEQTRLPKQDMRSELTPQILSVLMVTPDRMATLDLFQYI 297
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+ + + + R E + +V P ++ M ++ + +R+ + V GI
Sbjct: 298 RHLRDNKQ----DTQRYEIALWKKVVYPFTVLVMMALSLPFAYLHARAGAVGLKVFGGIM 353
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
G + + G + A++P L ++++++ L E
Sbjct: 354 LGLSFQLVNNLFSHVGLLNTWPAIFTAILPGALYLAVALVALRWAE 399
>gi|167645642|ref|YP_001683305.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
gi|167348072|gb|ABZ70807.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
Length = 354
Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats.
Identities = 66/354 (18%), Positives = 129/354 (36%), Gaps = 8/354 (2%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L L ++ ++DL E+ + + + AA R P +++Q+
Sbjct: 6 YVLRTVGTRVLGAGLILFSILQILDLLEVTTDIIDR-GLGTAGVLYYAALRSPRLVEQVA 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P TL + F L R + ++ RA GIS ++++ + L+ IA
Sbjct: 65 PLATLAGGLFAFSQLARENAIIAMRATGISAYRIVGMALPVVFLVMALDFSCAQIIAPRT 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ ++ W +P + D+ I A + DK
Sbjct: 125 DP----VLADWWQATTPAAERKVPGPRSFRAGDDLVIAAG-ASADGGTLNAVKIYRRDKI 179
Query: 188 NKIIHRKDADLAIIY-NDKVKLKK-VVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
++I R +A A L K V+ G + L+ P + +
Sbjct: 180 GRLIERIEAPSASYNSGGGWTLAKPVIVRFKGEQVNVVPAAQLSWPSPLHRQDVQALFAD 239
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
S + + + ET+F P + M L++A V+L RS Q
Sbjct: 240 SPVPTAATARRALLSGGGDRPAAFYETRFLSAFAGPFAALVMLLLSAPVALANFRSGQGA 299
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
++A G+ +G + + ++ + G+ G L P+ A ++ +L++ L+ E
Sbjct: 300 GLLAGGLAAGLLFLVVNGMLSALGEGGSLSPILAVWGGPVIFAALAVYALVVLE 353
>gi|187929752|ref|YP_001900239.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12J]
gi|309781532|ref|ZP_07676268.1| membrane protein [Ralstonia sp. 5_7_47FAA]
gi|187726642|gb|ACD27807.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12J]
gi|308919945|gb|EFP65606.1| membrane protein [Ralstonia sp. 5_7_47FAA]
Length = 397
Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats.
Identities = 58/399 (14%), Positives = 126/399 (31%), Gaps = 49/399 (12%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ +YF + ++ L + L D+ + + Y+ + P
Sbjct: 4 PVYEKYFARQIYGVFVFILFAVLALFIFFDMLGELGSV--VGRYTTLVAFFHVMLQAPTR 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++IP L+ I VF + SE I R G+ + L ++ L + T L
Sbjct: 62 VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALVTYLFGEF 121
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP--------QQDIFIGAKKILPENH 174
I E+ + + W++ P + F+ + P+
Sbjct: 122 IGPKAEEYAQKVRLEALGATVSAGFRSGVWVKDRGPAKPDGTGGEVTRFVNVGALQPDQS 181
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNSTTLN---- 229
I + D ++ + AD A + +L V E ++ P +
Sbjct: 182 I-KGLRIYEFDSDYRLSSIRVADQARYQGHQNWQLNDVTETRFVEFPRKPGTVAPQDTVQ 240
Query: 230 -----------------------------IPIKMDGFQKFSEQFASRSFYEIIKKMSFSN 260
P + ++ A+ ++ I+ + +
Sbjct: 241 AVPGAPDALAPDFRGEQTKLPHQEMRSELTPQILSVLMVTPDRMATLDLFQYIRHLRDNK 300
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
+ R E + +V P ++ M +A + +R+ + V GI G
Sbjct: 301 Q----DTQRYEIALWKKVVYPFTVLVMMALALPFAYLHARAGAVGLKVFGGIMLGLSFQL 356
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + G + A++P L ++L+++ L E
Sbjct: 357 VNNLFSHVGLLNTWPAIFTAIVPGALYLALALVSLRWVE 395
>gi|293603258|ref|ZP_06685689.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
gi|292818347|gb|EFF77397.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
Length = 372
Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats.
Identities = 59/353 (16%), Positives = 119/353 (33%), Gaps = 19/353 (5%)
Query: 25 MILVFVIDLNEIQNQMGELPN-YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLN 83
M L+ + + + + + + +S+ + A +P + ++P L+ I+ L
Sbjct: 1 MALLGLFTFFALVDDLDNVGDKFSMMALLYMQALAIPTRLYDLLPIGLLIGAILALAGLA 60
Query: 84 RTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGD 143
+ +ELVI R G+S +LL V +I L I L+ + E + ++
Sbjct: 61 QRNELVILRVSGVSGMRLLRMLWVVTIPLMIGAALLSEYVTPWAEIKSGEANLMFRGKAG 120
Query: 144 KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYN 203
+ W + + I L + T K + A + +
Sbjct: 121 GDRLKSGYWFKEPTANGGMRIINIAELKGDGQVAGITLYEFKKDQTLTVLSTAPTGLFSH 180
Query: 204 DKVKLKKVVE--------------YQYGRIP---IDKNSTTLNIPIKMDGFQKFSEQFAS 246
+ LK V E Q P + T++ + +
Sbjct: 181 GDLVLKDVSETRLDNDAADALANARQPKNPPASVVKVPERTIDTTLSAERLLARVLTPER 240
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
S ++ + + + + + R + + P L+ M IAA + L +R
Sbjct: 241 MSIVTLLDYVEYLRDNQLQYG-RQVVALWRKLAYPFTLLVMITIAAPIGLMQTRRGGVGA 299
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
V GI G + + + + G G AL P I ++L++ + E
Sbjct: 300 KVFIGILLGVGFFMLNQLALNVGMLGKWPSWLTALGPNIGAMALALGAMSYME 352
>gi|307154796|ref|YP_003890180.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
gi|306985024|gb|ADN16905.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
Length = 388
Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats.
Identities = 65/370 (17%), Positives = 132/370 (35%), Gaps = 24/370 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
Y F L+ + L + + L +I ++ E SIS + ++P +
Sbjct: 22 YVFMELFIPFLFGMGLFTSLGIAIGTLFDIVRKVTE-SGLSISIALQILMLKMPEFVVLA 80
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P L+ ++ + L SEL+ R+IGIS ++LL P ++ S+++ T + +A
Sbjct: 81 FPMSILLATLMGYSRLASDSELIAFRSIGISPYRLLVPSLILSLMVTGTTFFFSDYVAPQ 140
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFI----GAKKILPENHIW 176
+ ++ + + + N + + A+K +
Sbjct: 141 ATQQAKSILADALKQDKPLQVEDNIIYPEYKKITQDNGRDQTILTRLFYAEKF--DGQQM 198
Query: 177 EDFTSITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYG-----RIPIDKNSTTLN 229
+ T + + + + AI + Y R + L+
Sbjct: 199 QGLTILDRSQPG-VNQIVTSQSAIWNVDQNSWDFYNGTIYLIAPDGSYRNIVRFEHQQLD 257
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVAMT 288
+P K + A S E + + S R E + +P + +
Sbjct: 258 LPRAPLDIAKRKQNPADMSIAEAKEYLKIVKLSKNDQRARKVEVRIQEKYALPFVCIVFG 317
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
LI +++ L+ +N+ I F Y + I S G GI+ P +A +P IL +
Sbjct: 318 LIGSAIGLKPQNTNK-ATSFGVCIVLIFSYYLLSFITSSMGIWGIVTPTVSAWLPNILGL 376
Query: 349 SLSILILLQK 358
++ +L+Q
Sbjct: 377 LAAMSLLVQT 386
>gi|299065987|emb|CBJ37168.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
solanacearum CMR15]
Length = 401
Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats.
Identities = 55/395 (13%), Positives = 124/395 (31%), Gaps = 49/395 (12%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + ++ L + L D+ + + Y+ + P + ++
Sbjct: 12 KYFARQIYGVFVFILFAVLALFVFFDMLSELGSV--VGRYTTLIAFFHVMLQAPTRVYEV 69
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G+ + L ++ L + T + I
Sbjct: 70 IPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALVTYIFGEFIGPK 129
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP--------QQDIFIGAKKILPENHIWED 178
E+ + + W++ P + F+ + P+ I +
Sbjct: 130 SEQFAQKVRLEALGATVSSGFRSGVWVKDRGPARPDGSGGEVTRFVNVGTLQPDQTI-QG 188
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNSTTLN-------- 229
D ++ + A A + +L V E ++ P T
Sbjct: 189 LRIYEFDTDYRLSSIRVAQQARYQGHQHWELNDVTETRFIEFPRHAGGATPQDSKQAVPG 248
Query: 230 -------------------------IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI 264
P + ++ A+ ++ I+ + + +
Sbjct: 249 APDALAPDFRGEQTRLPKQDMRSELTPQILSVLMVTPDRMATLDLFQYIRHLRDNKQ--- 305
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
R E + +V P ++ M ++ + +R+ + V GI G + +
Sbjct: 306 -DTQRYEIALWKKVVYPFTVLVMMALSLPFAYLHARAGAVGLKVFGGIMLGLSFQLVNNL 364
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
G + A++P L ++++++ L E
Sbjct: 365 FSHVGLLNTWPAIFTAILPGALYLAVALVALRWVE 399
>gi|257454351|ref|ZP_05619614.1| permease YjgP/YjgQ family protein [Enhydrobacter aerosaccus SK60]
gi|257448254|gb|EEV23234.1| permease YjgP/YjgQ family protein [Enhydrobacter aerosaccus SK60]
Length = 357
Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats.
Identities = 61/366 (16%), Positives = 130/366 (35%), Gaps = 22/366 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K L ++G +L V D + + +Y+ A P +
Sbjct: 2 ILSRYVKKQALFAMTGAIIGLWLLKVVFDYLAELQDLND--HYNYLDALRFIAYSAPRDL 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+PF TL+ +V L TSEL + +A GIS ++++ + +I+ I +L+ +
Sbjct: 60 LDYMPFGTLLGAVVGLGLLANTSELTVIQAAGISRFKIVGWVMQPAIIFVIIRLLLGQYV 119
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ + D + W + +N I + ++
Sbjct: 120 VPTSNQLAHQV---KHDKPLLSSAINGYWDKQANR----IINIDHANTKG-ELKNIKVWQ 171
Query: 184 IDKKNKIIHRKDADLAII-------YNDKVKLKKVVEYQYGRIPIDK----NSTTLNIPI 232
+D I AD +L+++ + + + TL +PI
Sbjct: 172 LDDNAHIQQVLQADTGSFVSQNTADKTSGWQLQQIKQLTIAADGHSQLTTIPTMTLQLPI 231
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + + S E+ + K E F+ ++ P ++++ L+A
Sbjct: 232 EPSAIYLLTRSPDNMSVTELWQHQQLLAKDKRRS-LEHEVAFWKKLLAPFAMLSLVLVAC 290
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S R+ + + G + + ++ S P L+P+I + +L +
Sbjct: 291 SFVFGSLRNQSLGYRIVIALLFGLVFSYLQDLVGFVSLSTGFSPFFMVLLPIIASAALGV 350
Query: 353 LILLQK 358
++ K
Sbjct: 351 YLIRNK 356
>gi|332286756|ref|YP_004418667.1| hypothetical protein PT7_3503 [Pusillimonas sp. T7-7]
gi|330430709|gb|AEC22043.1| hypothetical protein PT7_3503 [Pusillimonas sp. T7-7]
Length = 392
Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats.
Identities = 57/349 (16%), Positives = 111/349 (31%), Gaps = 20/349 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY K ++T+ L+ + L L E + + +++ + A +P + +
Sbjct: 6 RYLAKEIYRSTIVVLMALIGLFTFFALIEELDNLSN--QFTLLNLFYMQALALPTTLYDL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ I+ L + +ELVI R G+S +LL + +I L L+ I +
Sbjct: 64 LPIGLLIGAILALAGLAQRNELVILRVSGVSGMKLLTMLWIVTIPLVFGAFLLSEIITPA 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E + + + W + S+ Q I L + D T
Sbjct: 124 AEIKSSEASLTLLGKAGGGRLNSGYWFKESDEQGGTRIINIGQLKSSGNVADITLYEFKN 183
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-----------------NSTTLN 229
++ A + + L V + + TL
Sbjct: 184 GQELATFSTAKQGQFADGTLVLGDVKQTSINADSLSTLANAVQPDTPLTRLETLPERTLK 243
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ + S ++ + + +N+ R + + P L+ M
Sbjct: 244 TSLTPERLIARILTPERMSIRVLLDYIDYLENNNL-QTDRQIVALWRKMAYPFTLLVMIT 302
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
IAA +S +R V GI G + + + + G P
Sbjct: 303 IAAPISFMQTRRGGVGSKVFVGILLGVGFFMLNQLALNVGMLNQWAPWV 351
>gi|89900898|ref|YP_523369.1| permease YjgP/YjgQ [Rhodoferax ferrireducens T118]
gi|89345635|gb|ABD69838.1| permease YjgP/YjgQ [Rhodoferax ferrireducens T118]
Length = 368
Score = 158 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 61/367 (16%), Positives = 131/367 (35%), Gaps = 25/367 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYS--ISRGAVLAATRVP 60
L R + L + LG + L F D E +G + A +P
Sbjct: 2 KTLRRLIYGEVLYAVAFVTLGFLSLFFFFDFVEEIQAVGRYSEAGYRLVHALTFVALMIP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +++P L+ I V L ++SE I R G+ W+ L ++ + + T +
Sbjct: 62 SHLYELLPIAVLIGTIFVMARLAQSSEFTILRTSGLGPWRALKALLLLGLGFVVLTFAIG 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ I+ ++ G L + + G W++ + + P+
Sbjct: 122 DYISPPADRAGQLL--KARYQGSITVGQTGAWLKEQQTNAQYAVNVSAMAPDGS-MRGVR 178
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNSTTL--------NIP 231
D + ++ A+ A +D L +V ++ P D ++ + P
Sbjct: 179 VFEFDNQGFLMSTLQAESAQFGADDAWNLSRVSRTEF--PPRDADTARIDRAQLDSFRWP 236
Query: 232 IKMDGFQK-----FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
++ E+ ++ ++ I+ + ++N R E +F+ + PL +
Sbjct: 237 NQISAEMVAAALLKPERMSTIDLFQYIQHL----RANSQVAQRYEIEFWKKVFYPLSCLV 292
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
M ++A + RS V G+ +G + + + G P A +P ++
Sbjct: 293 MVVLALPFAYLHFRSGGIATYVFGGVMAGISFFLLNNVFGYMGNLQNWQPWLTAALPGMI 352
Query: 347 TISLSIL 353
+ LS+
Sbjct: 353 YLVLSLT 359
>gi|300690718|ref|YP_003751713.1| permease, predicted YjgP/YjgQ family [Ralstonia solanacearum PSI07]
gi|299077778|emb|CBJ50416.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
solanacearum PSI07]
Length = 398
Score = 158 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 55/399 (13%), Positives = 127/399 (31%), Gaps = 49/399 (12%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ +YF + ++ L + L D+ + + Y+ + P
Sbjct: 5 PVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSV--VGRYTTLIAFFHVMLQAPTR 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++IP L+ I VF + SE I R G+ + L ++ L + T +
Sbjct: 63 VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALVTYVFGEF 122
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP--------QQDIFIGAKKILPENH 174
I E+ + + + W++ P + F+ + P+
Sbjct: 123 IGPKSEQFAQKVRLEALGATVSAEFRSGVWVKDRGPARPDGSGGEVTRFVNVGSLQPDQT 182
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYN-DKVKLKKVVEYQYGRIPIDKNSTTLN---- 229
I + D ++ + A A + +L V E ++ P + T
Sbjct: 183 I-RNLRVYEFDADYRLSSIRVAQQASYQGHQRWELNDVTETRFIEFPRQAGAATPQDSKQ 241
Query: 230 -----------------------------IPIKMDGFQKFSEQFASRSFYEIIKKMSFSN 260
P + ++ A+ ++ I+ + +
Sbjct: 242 AVPGAPDALAPDFRGEQTKLPKQEMRSELTPQILSVLMVTPDRMATLDLFQYIRHLRDNK 301
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
+ R E + +V P ++ M ++ + +R+ + V GI G
Sbjct: 302 Q----DTQRYEIALWKKVVYPFTVLVMMALSLPFAYLHARAGAVGLKVFGGIMLGLSFQL 357
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + G + A++P L ++++++ L E
Sbjct: 358 VNNLFSHVGLLNTWPAIFTAILPGALYLAVALVALRWVE 396
>gi|241663807|ref|YP_002982167.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12D]
gi|240865834|gb|ACS63495.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12D]
Length = 397
Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 56/399 (14%), Positives = 126/399 (31%), Gaps = 49/399 (12%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ +YF + ++ L + L D+ + + Y+ + P
Sbjct: 4 PVYEKYFARQIYGVFVFILFAVLALFIFFDMLGELGSV--VGRYTTLVAFFHVMLQAPTR 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++IP L+ I VF + SE I R G+ + L ++ L + T +
Sbjct: 62 VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALVTYIFGEF 121
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP--------QQDIFIGAKKILPENH 174
I E+ + + W++ P + F+ + P+
Sbjct: 122 IGPKAEEYAQKVRLEALGATVSAGFRSGVWVKDRGPAKADGTGGEVTRFVNVGALQPDQS 181
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNSTTLN---- 229
I + D ++ + A+ A + +L V E ++ P +
Sbjct: 182 I-KGLRIYEFDSDYRLSSIRVAEQARYQGHQNWQLNDVTETRFVEFPRKPGTVAPQDTVQ 240
Query: 230 -----------------------------IPIKMDGFQKFSEQFASRSFYEIIKKMSFSN 260
P + ++ A+ ++ I+ + +
Sbjct: 241 AVPGAPDALAPDFRGEQTKLPHQEMRSELTPQILSVLMVTPDRMATLDLFQYIRHLRDNK 300
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
+ R E + +V P ++ M +A + +R+ + V GI G
Sbjct: 301 Q----DTQRYEIALWKKVVYPFTVLVMMALALPFAYLHARAGAVGLKVFGGIMLGLSFQL 356
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + G + A++P L ++L+++ L E
Sbjct: 357 VNNLFSHVGLLNTWPAIFTAIVPGALYLALALISLRWVE 395
>gi|325860534|ref|ZP_08173638.1| permease, YjgP/YjgQ family [Prevotella denticola CRIS 18C-A]
gi|327313657|ref|YP_004329094.1| permease [Prevotella denticola F0289]
gi|325481919|gb|EGC84948.1| permease, YjgP/YjgQ family [Prevotella denticola CRIS 18C-A]
gi|326944618|gb|AEA20503.1| permease, YjgP/YjgQ family [Prevotella denticola F0289]
Length = 405
Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 61/365 (16%), Positives = 128/365 (35%), Gaps = 18/365 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
GIL Y + ++ T +Y +L + + V D NE ++ + + A +P
Sbjct: 46 GILDWYIIRKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIVFDYYANFIPYY 105
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A G+SI +L+ P+++ +L+ T + +
Sbjct: 106 SNLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSIRRLMRPYMISCVLIAGLTFYLNSF 165
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I + ++++ ++ + ++ + + F+ +
Sbjct: 166 VIPHGTVIRQNFESLYRNSKKNTSAENV----QLYVAKNTTAYIQHYDNQYKRGYGFSLV 221
Query: 183 TIDKKNKIIH----RKDADLAIIYNDKVKLKKVVEYQYGRIPI------DKNSTTLNIPI 232
I K + H D +L + K++ L P
Sbjct: 222 KIKDKKIVSHMTAMEIQYDTVADTKFHWRLSNWKMRTLKGLKEHIQSGASKDTVLLMEPT 281
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + E F S + I K + N+ + E +F+ I + +T+I
Sbjct: 282 DLVYSKGQQETFTSPELLDYISKQTSRGSGNV---VQYEVEFHKRIAMSFSSFILTIIGL 338
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S+S R + + G+ F + T+ +F P+ AA IP I+ ++
Sbjct: 339 SLSSRK-RKGGMGLYLGIGLALSFSYIMLQTVSSTFAIQADTPPLLAAWIPNIIFAVIAY 397
Query: 353 LILLQ 357
Sbjct: 398 FCYRH 402
>gi|298529509|ref|ZP_07016912.1| permease YjgP/YjgQ family protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510945|gb|EFI34848.1| permease YjgP/YjgQ family protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 355
Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 66/357 (18%), Positives = 141/357 (39%), Gaps = 13/357 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + L T L ++ ++D N M E + ++PLI+
Sbjct: 3 VLNRYLLRQNLFYTAVLLFSGTMVYLIVDFVGRMNAMVE-AGLGALQVLEYFVFKMPLIV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q +P I ++ ++ ++R++ELV + IS + F+ ++++ + + +
Sbjct: 62 AQTLPAIFMLGVLIQMAMMHRSNELVAMESSAISFRKPAVFFIGYALVVFMLLFVFSETL 121
Query: 124 ATSGEKIGIDLIQQ-WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
GE++ + Q +D + W++ +D I ++ +DFT+
Sbjct: 122 GVRGEQVTRQIWNQDVRDREAAVEGLEDVWVK----DRDYMIHIERAHINEGRGKDFTAY 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GRIPIDKNSTTLNIPIKMDGFQK 239
KI A ++ +++ L+ V ++ R + + + I ++
Sbjct: 178 KKSDPGKIQEIIKAPEFEVHKNRLLLRDVTVFKPHSLERQSLQEMEMEVKIDLRSFALVD 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + S + + ++ +S + T + I P LV MTL+A ++ F+
Sbjct: 238 SDLPYQAWSIFTLSALVNQLKESGA-SVEKISTALHSKIAYPFALVVMTLLALAL---FT 293
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R +V G+ F YT+ S+ + G+ P A + LS+L L
Sbjct: 294 RIKNIYALVTLGLVIVFFYYTVYVFGVSYAEEGVTAPFVGAWTANVFFGILSLLQLF 350
>gi|312968689|ref|ZP_07782898.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|312286907|gb|EFR14818.1| conserved hypothetical protein [Escherichia coli 2362-75]
Length = 359
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + + D
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-DVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ + + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETQETSDYLAWQSTFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|297569344|ref|YP_003690688.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
AHT2]
gi|296925259|gb|ADH86069.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
AHT2]
Length = 361
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 62/368 (16%), Positives = 137/368 (37%), Gaps = 19/368 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY F + + L G + + +ID E + + I ++P
Sbjct: 1 MIMLLDRYLFWQFTRNLALVLGGLVAIYLLIDFFERVDSFLD-AGLGIGTAITYLLLKIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL-- 118
LI +Q+IP L+ I+ LNR +EL+ ++ G+S+ +++ P ++ ++ +
Sbjct: 60 LIFEQLIPVCLLLAGIITLGVLNRHNELMALKSGGLSVRRIIRPLLLAALFFSGLALAAG 119
Query: 119 --VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
++ P ++ + ++Q G ++ +I +
Sbjct: 120 QWLLPPTLAETNRLWYEEVRQQTPEGIERNG------RIYYRGAKGIYSFAQPDDPASGL 173
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKK----VVEYQYGRIPIDKNSTTLNIPI 232
DF+ +++ ++ A +A + L V+ N T+ +P
Sbjct: 174 PDFSFTAWNEEYQLARLLTAAIAHWEAGRWTLLDGQLKVLTADDQYRTTIFNEMTIELPE 233
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM--LVAMTLI 290
+ + F A R E++ + S + R E I + + + I
Sbjct: 234 RPEDFFLPPYALAERPLSELLARALAPEDSPRRYEARLE--LQQKISYIFLGLPLLLVGI 291
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+++ R + V F ++ + +I ++ +G L P AA + +L SL
Sbjct: 292 PLLLAMHRGRGRDLALAVPASCIMAFAVWGLWSICQALASAGHLSPALAAWLVHLLAGSL 351
Query: 351 SILILLQK 358
+L++
Sbjct: 352 GFYFILRQ 359
>gi|304382916|ref|ZP_07365398.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
gi|304335941|gb|EFM02189.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
Length = 402
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 57/362 (15%), Positives = 122/362 (33%), Gaps = 18/362 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY + ++ T ++ + + + V D+NE + E + VP
Sbjct: 42 IKRLDRYIIRKFIGTYIFAIALIISISIVFDVNENLAKFSEYKAPLKAIVFDYYMNFVPY 101
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ A GIS +L+ P++ +L+ + +
Sbjct: 102 FANLFSPLFVFIAVIFFTSKLAGNSEIISMLAAGISFRRLIRPYMFSCVLISGLSFYLSA 161
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G I + +K+ ++ + + + K F
Sbjct: 162 YVIPHGTVIRQNFETLYKNKKKNTSAENV----QLQVGKGVIAYMKLYDNTIKKGYGFCL 217
Query: 182 ITIDKKNKIIH--RKDADLAIIYNDK-------VKLKKVVEYQYGRIPIDKNSTTLNI-P 231
+ K + H + I + K K++++ + T L + P
Sbjct: 218 YKFENKKLVSHMTASEIQYDTISDSKYHWKAMDWKIRQLRGLREKITSGITKDTVLQMEP 277
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + E F S + I K N+ + + +++ I +T+I
Sbjct: 278 TDLVYSKGQQETFTSPQLLDYISKQIDRGSGNV---VQYQVEYHKRIASSFASFILTIIG 334
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S R + + G+ F + T+ +F + P+ AA +P I+ ++
Sbjct: 335 VSLSSRK-RKGGMGLYLGIGLALSFGYIMLQTVSSTFAINANTPPILAAWLPNIIFAFVA 393
Query: 352 IL 353
Sbjct: 394 YF 395
>gi|16330198|ref|NP_440926.1| hypothetical protein slr0882 [Synechocystis sp. PCC 6803]
gi|1652686|dbj|BAA17606.1| slr0882 [Synechocystis sp. PCC 6803]
Length = 394
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 53/371 (14%), Positives = 130/371 (35%), Gaps = 24/371 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY F ++ + L I L ++ ++ E + + ++P
Sbjct: 22 VMDRYLFVELFLPFIFGMGMFTSLALSIGTLFDLVRRVTE-SGLPMDIAVKILFLKMPEF 80
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ +++ + L+ SEL+ R+IG+SI++L+ P ++ I++ + +
Sbjct: 81 VVLAFPMSMLLASLMAYSRLSSDSELIALRSIGVSIYRLVVPALLFGIVVTGIAFVFNDR 140
Query: 123 IATSGEKIGIDLIQQW--KDNGDKQKSDIIP----WMQISNPQQDIFIGAKKILPE--NH 174
I + + + + +D +Q+ +II ++ + + + E
Sbjct: 141 ITPAASYEALATLDRAIHQDRPPRQEQNIIYPEYGMVRQPDGNEKNILKRLFYAEEFNGS 200
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNSTTL---- 228
+ T + + + A+ A + Y +N
Sbjct: 201 EMKGLTILDRTQSG-VNQVLTAERASWNISENTWDFYDGTVYLIAPDGSYRNIVRFRHQQ 259
Query: 229 ----NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
P+ + ++ + ++ + S + E + +P +
Sbjct: 260 LALPRAPLDLASQERKDGEMTIAQSRRYLEVLRLSGDDKKV--RKLEVRIQKKYALPFVC 317
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
LI A++ + +N+ + F Y + + +S G G L P AA +P
Sbjct: 318 FVFGLIGAAIGVRPQNTNK-ATSFGICVGLIFFYYLLSFLSESMGIWGALDPFTAAWLPN 376
Query: 345 ILTISLSILIL 355
L + ++L
Sbjct: 377 FLGLIAGTILL 387
>gi|254303141|ref|ZP_04970499.1| hypothetical protein FNP_0781 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148323333|gb|EDK88583.1| hypothetical protein FNP_0781 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 363
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 58/365 (15%), Positives = 130/365 (35%), Gaps = 9/365 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + + +P
Sbjct: 1 MIKKMDMYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQ-GKLAGGEIFDYILNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ +F +
Sbjct: 60 KMFVETAPLSVLLAGLITVSIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLFVFFIN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I T + D K + I+N +++ KI E + E+
Sbjct: 120 NSIYTKSLAKINFYRRGEVDETLKLPTTKENAFFINNTDGYLYLM-GKINRETGVAENIE 178
Query: 181 SITIDKK-NKIIHRKDADLAII--YNDKVKLKKVVEYQYG-RIPIDKNSTTLNIPIK--M 234
+ + + +K A A +K Y + + K N+
Sbjct: 179 IVKFENEISKPKEIITAKSAKFDTEENKWIFSNANIYNVDTKETVTKTEYKSNLYKDDPS 238
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + +E + E+ K + K+ + P + I SV
Sbjct: 239 NFIRASAEDPRMLTIKELKKTIKEQ-KNIGEDTRIYLAELAKRYSFPFASFIVAFIGLSV 297
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S ++ R + + + + +G+ Y + ++ +GIL P A+ IP IL + + I
Sbjct: 298 SSKYVRGGRTTMNLVICVVAGYGYYLVSGAFEAMSLNGILNPFIASWIPNILYLIIGIYF 357
Query: 355 LLQKE 359
+ + E
Sbjct: 358 MNRAE 362
>gi|323697853|ref|ZP_08109765.1| permease YjgP/YjgQ family protein [Desulfovibrio sp. ND132]
gi|323457785|gb|EGB13650.1| permease YjgP/YjgQ family protein [Desulfovibrio desulfuricans
ND132]
Length = 375
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 62/355 (17%), Positives = 133/355 (37%), Gaps = 12/355 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L L L + D+ + + ++P
Sbjct: 1 MIGVLSRYLIRQNLYLMAICLAVGTSLYLLSDIFDRLDDFIR-AGLGAQTILFYFIVKIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
LI+ Q++P + L+ +V L R+ E++ RA G+S + FV+ +++ ++
Sbjct: 60 LIVSQLMPAVFLLAMVVQLGVLARSREMLALRAGGVSFAWFIRFFVIYALIWSCGQLVFS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ GE+ + WK++ K++ D + + + AK+ P D T
Sbjct: 120 QFLGVFGEQEANRI---WKEDVRKKQLDELTIHNLWFRDGPFIVQAKEAQPSKSRASDIT 176
Query: 181 SITIDKKNKIIHRK-DADLAIIYNDKVKLKKVVE---YQYGRIPIDKNSTTLNIPIKMDG 236
N+ + R +A A+I + L V E + + ++ +K
Sbjct: 177 IYEFTTDNQELIRILNAKKALIDDHGWGLLDVHELDTRTFITVDRPSQFLSVRQNLKAYA 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ A E+ + ++ +S + + +V M L+A +
Sbjct: 237 AVELKGDTAQLPLIELSRAIARLQESGSNVEMLLTIW-HGKLSYAFSMVVMALLALVL-- 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+ S + + F+ Y + + + G+ G+L P+ AA + + +L+
Sbjct: 294 -VTFSENVYANIGLALILIFIQYGMHVVGATAGEKGVLPPILAAWLGNGIMAALA 347
>gi|325954886|ref|YP_004238546.1| permease YjgP/YjgQ family protein [Weeksella virosa DSM 16922]
gi|323437504|gb|ADX67968.1| permease YjgP/YjgQ family protein [Weeksella virosa DSM 16922]
Length = 365
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 54/362 (14%), Positives = 125/362 (34%), Gaps = 7/362 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL +Y K +L T + +L + +ID + +++ + I
Sbjct: 2 KILDKYIVKNFLGTFFFMVLILTSIAIIIDFTQKLDRIDSTGSTVTEALIHFYPYWGVWI 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P + I L +E+V + GIS ++L P+V+ + L ++V N
Sbjct: 62 VNTFLPVAVFISVIYFTSRLTAQTEIVGMLSGGISFYRLTRPYVIVAAGLAFTAMMVNNV 121
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + +K + + + ++ + + +
Sbjct: 122 VLPWANIKKNKYQYEHLLSMRARKEYYKQQVISAQISSNEYVFVESYDRIEKRSDSYFLY 181
Query: 183 TIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMDG 236
++ + A + L+ V E + D +S + + D
Sbjct: 182 QKFDSVQLKEQIMASSFTWDDKDSSYILQNVFERKVLSPKKDSIAYLSSKKIKLKATPDE 241
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + +E++K + + E + + P +T++A S+S
Sbjct: 242 ILPEGYVAETMNSFELMKFIESQKNKGSANVVVYENELQQRVSSPFSTFILTILALSLSS 301
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ R + +A GI F+ I +F + G + P AA IP ++ L+ +
Sbjct: 302 KK-RRGGIGVNLAVGITLAFVYIFFSQIATTFSEQGYVTPFVAAWIPNVVFGLLTTFLYF 360
Query: 357 QK 358
++
Sbjct: 361 RR 362
>gi|331684625|ref|ZP_08385217.1| putative permease [Escherichia coli H299]
gi|331078240|gb|EGI49446.1| putative permease [Escherichia coli H299]
Length = 359
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + + D
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-DVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ + + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETQETSDNLPWQSAFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|288799848|ref|ZP_06405307.1| membrane protein [Prevotella sp. oral taxon 299 str. F0039]
gi|288333096|gb|EFC71575.1| membrane protein [Prevotella sp. oral taxon 299 str. F0039]
Length = 377
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 56/362 (15%), Positives = 125/362 (34%), Gaps = 18/362 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y K ++ T ++ +L + + V D+NE + + + A VP
Sbjct: 17 IKILDWYIIKKFIGTYIFSILLIISVAIVFDVNENLARFAQYHAPLKAIVFDYYANFVPY 76
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ A G+S +L+ P+++ L+ + + + +
Sbjct: 77 FANLFSPLFVFIAVIFFTSKLAGNSEIISILAAGVSFKRLMRPYMISCALISMLSYYLSS 136
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G I + +K+ +D + + + + F+
Sbjct: 137 NVIPHGTVIRQNFEALYKNKTKNTSADNVLLQVDKG----VIAYIQHYDNNSKRGYGFSL 192
Query: 182 ITIDKKNKI--IHRKDADLAIIYNDK--VKLKKVVEYQYGRIPI------DKNSTTLNIP 231
+ K + + + I + K + + + +++ + P
Sbjct: 193 DKFNNKKLVSHLTATEIQYDTISDTKYHWTISNWKTRKLEGLKEKITTGAQRDTIIMMEP 252
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + E F S + I K SN+ + + +++ I +T I
Sbjct: 253 TDLVYSKGQQETFTSAQLQDYISKQIDRGSSNV---VQYQVEYHKRIASSFASFILTTIG 309
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S R + + G+ F + T+ +F + P+ AA IP I+ ++
Sbjct: 310 LSLSSRK-RKGGMGLYMGIGLALSFGYIMLQTVSATFAINANTPPIIAAWIPNIIFSLVA 368
Query: 352 IL 353
Sbjct: 369 YF 370
>gi|331007486|ref|ZP_08330657.1| putative permease [gamma proteobacterium IMCC1989]
gi|330418710|gb|EGG93205.1| putative permease [gamma proteobacterium IMCC1989]
Length = 362
Score = 156 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 60/369 (16%), Positives = 133/369 (36%), Gaps = 24/369 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L Y F+ + + L LL L + L + + P Y+ + + +P
Sbjct: 3 LLNAYIFRTTVVSILVVLLVITALDILAKLIDELGNLT--PAYTFAEALIYVVLAIPSSF 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q +PF LV +V +L TSELV+ RA G+S+ +L + + ++ +
Sbjct: 61 YQYMPFAGLVGGLVGLGSLASTSELVVMRAAGVSLLRLTWAVLKPVLWFIAAMLVFAEYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ G+ S + N + +F+ + + T
Sbjct: 121 IPVSDQYAESRRSALLQGGNTALSAKGG---VWNREGTLFMHFNSVQANGKLL-GVTRYQ 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI------------- 230
D K ++ A+ A+ D + + VVE ++ + L
Sbjct: 177 YDDKQRLTLASFAETALYTADGWREENVVETRFLDAQSSSDKEALITTATYPSRPWQTEL 236
Query: 231 -PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
P + + ++ A Y+ + + N N + ++ ++ PL+++++ L
Sbjct: 237 SPNLLTILVQDTDNLAITKLYDYAQYLEKQN----LDNGKYLLAYWGKVLQPLVIISLVL 292
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+A S R + G+ G + ++ + P+ A L+P++
Sbjct: 293 VAISFIFGPLREVTMGYRIFTGVVVGIVFQLTQKLLGPASLLYGISPLFAVLLPILFCFG 352
Query: 350 LSILILLQK 358
+ + +L +
Sbjct: 353 VGLFLLART 361
>gi|291514726|emb|CBK63936.1| Predicted permeases [Alistipes shahii WAL 8301]
Length = 367
Score = 156 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 57/359 (15%), Positives = 123/359 (34%), Gaps = 11/359 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY +L T + + +++V V D E + EL S +P
Sbjct: 8 FKILDRYILGKFLSTYFFAIAMIIVIVVVFDYVEKIDDFTELHAPLKSVILDYYLNFIPY 67
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I Q T + I + +E+V + G+S +L+ P+ +G++++ ++ +
Sbjct: 68 FINQFSGLFTFIACIFFTSKMAYQTEIVAMLSGGMSFRRLMWPYFLGALIIASLSLTLNL 127
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + QQ+ K D + P +I + F
Sbjct: 128 WLIPISQRHIVAFEQQYIKRKQNTKYDR-HIYRQIEPGIFAYIRGYN---DGARQASFFV 183
Query: 182 ITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYG----RIPIDKNSTTLNIPIKMD 235
+ + + H +A A + + + ++ + I ++
Sbjct: 184 LERYESGTMTHSLEASDAKFNPETKRWTAPRYTKREFDSAGTETFEQFRNLDTLINLEAT 243
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ ++ + + E+ + E + + PL +TLI S+S
Sbjct: 244 ELGEINDLIQTMNISELNAFLDQQRAKGSDSINLIEVEKHARYAYPLSTFILTLIGVSLS 303
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + G F + F KSG L P A +P I+ + +++ +
Sbjct: 304 SRKVR-GGTGLHIGIGTGLCFSYILFNRFFEEFAKSGTLPPGLAVWLPNIIYLGIAVYL 361
>gi|329894347|ref|ZP_08270217.1| putative permease [gamma proteobacterium IMCC3088]
gi|328923143|gb|EGG30466.1| putative permease [gamma proteobacterium IMCC3088]
Length = 353
Score = 156 bits (396), Expect = 4e-36, Method: Composition-based stats.
Identities = 62/340 (18%), Positives = 109/340 (32%), Gaps = 11/340 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + T LL + L + L + + NY+ S+ + A VP I
Sbjct: 3 LLDRYVGMQVIYATCLVLLVLVGLDALSALIDELQDL--KANYTFSKALLYVAASVPARI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ P L+ +V L TSELV+ R G+S W LL + ++ +++ +
Sbjct: 61 VELAPIGILIGVLVALGQLASTSELVVIRGAGLSSWHLLRILMKPVLVFAGLMLIMGEFV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E+ G N W N + FI + I T T
Sbjct: 121 VPKSEQFGEAERALALSNKGSITGRYGMW----NREGRHFIHFNAVQAGGVI-YGVTLFT 175
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GRIPIDKNSTTLNIPIKMDGFQKF 240
D ++ A+ A L+ V Q G + + + D
Sbjct: 176 FDDNWRLHESMSANRATFQRAGWLLENVQRTQVNSWGSQTSEHTTLLWETDLTPDLLAME 235
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S S + + + + + E + + PL + + L+A R
Sbjct: 236 SLSPERLSINGLFQYSQYLKQQGLESAD-YEVAAWRKLTQPLAIFVLVLVAMGFIFGPLR 294
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ V G G + ++ S + P A
Sbjct: 295 DGTLGLRVFIGTLVGLVFKISQDVVASVTIVYGISPALAV 334
>gi|325917725|ref|ZP_08179913.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
gi|325536054|gb|EGD07862.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
Length = 368
Score = 156 bits (396), Expect = 4e-36, Method: Composition-based stats.
Identities = 58/358 (16%), Positives = 120/358 (33%), Gaps = 9/358 (2%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L T L + L V +G+ +YS A VP +
Sbjct: 11 YVGRVVLFTVLLTWAVLLGLDLVNAFASEAKNIGQ-GSYSFGHAVAFVAYTVPRRAYTLF 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P ++ ++ L TSEL RA+G+S ++ V LL V+ +
Sbjct: 70 PTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETVGPWA 129
Query: 128 EKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENHI---WEDFTSIT 183
+ L + N D + W + N + G +K+L D
Sbjct: 130 QNQADTLKTSARYNSDMAMARYSGLWAREGNTFLNALGGEEKLLANGGTALSLHDVRLYN 189
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGFQKF 240
+D ++ A +A + + L++V + + + + +
Sbjct: 190 LDTNGRLQQLTYASVAEHRDGRWTLRQVRRDTFQDRSVQRETFPELPWQSQLSPAALASG 249
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + S +E+ + + + + N E Q++ PL ++A+ + A S R
Sbjct: 250 LAKPRNLSAHELQQSIEY-RRRNGLDARDYEDQYWSRWFYPLNVLALCMAAIPFSFGSLR 308
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + GI + + + L A +P ++ + +S + ++
Sbjct: 309 SGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSAWLFRRR 366
>gi|215488305|ref|YP_002330736.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
gi|215266377|emb|CAS10814.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
Length = 359
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 131/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + + D
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-DVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ + + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETQETSDYLAWQSTFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS + +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPRMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|189465688|ref|ZP_03014473.1| hypothetical protein BACINT_02049 [Bacteroides intestinalis DSM
17393]
gi|189433952|gb|EDV02937.1| hypothetical protein BACINT_02049 [Bacteroides intestinalis DSM
17393]
Length = 378
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 54/359 (15%), Positives = 124/359 (34%), Gaps = 12/359 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T ++ + + + V D NE ++ + VP
Sbjct: 20 LKRLDFYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKFMSHEAPWKAIVFDYYLNFVPY 79
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S ++L P++V + ++ + T + +
Sbjct: 80 FANLFSPLFVFISVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVVTFCLGS 139
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G I+ ++ + I + ++ + F+
Sbjct: 140 YVIPKGSVTRINFEDKYYKQRKSNTARNI----QLEVDSGVIAYIERFEDYSKTGYRFSL 195
Query: 182 ITIDKKNKIIHRKDADLAIIYN---DKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMD 235
K +++ A K +K + + + + + + ++
Sbjct: 196 DKF-KDKQLVSHLTARSITYDTASVHKWTIKDYMIREMDGMKENIVKGDRIDSILFMEPA 254
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F Q + E+ + +S + + E +++ I + +TLI S+S
Sbjct: 255 DFLIMKNQQEMMTSPELSEYISRQRQRGFANIKEFELEYHKRIAMSFASFILTLIGVSLS 314
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ ++ + + G+ F TI +F +G + PV A IP IL ++ +
Sbjct: 315 SKKTK-GGMGLHLGIGLALSFSYILFQTIASTFAVNGNVPPVVAVWIPNILYAFIAFYL 372
>gi|134296647|ref|YP_001120382.1| permease YjgP/YjgQ family protein [Burkholderia vietnamiensis G4]
gi|134139804|gb|ABO55547.1| permease YjgP/YjgQ family protein [Burkholderia vietnamiensis G4]
Length = 382
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 63/374 (16%), Positives = 122/374 (32%), Gaps = 28/374 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + +SE I R G++ Q L + + L I T L+ +
Sbjct: 65 IPVAALISAIYVFAQMAASSEFTIFRVSGLATNQALRSLLKIGVPLVIITYLIGEFVGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + Q W+ + + Q F+ + P++ I +
Sbjct: 125 ADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTI-SNVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP------------------I 221
D K ++ + + A LK V E + I +
Sbjct: 184 IYEFDSKFQLQNVRIAQTGRYEPPGHWLLKGVTETELTPIKPIAGQPADALNPVYRSQQV 243
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
L + S + + + + N R + + ++ P
Sbjct: 244 SLPEYRLRSDLTPQILSVLLVSPERMSLINLFRYIQHL-RENQQDTQRYDIALWRKLLYP 302
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ M +++ + +R+ + V GI G + T+ G A
Sbjct: 303 FAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAPLTAA 362
Query: 342 IPVILTISLSILIL 355
P ++ ++L + L
Sbjct: 363 TPGLIYLALGLFAL 376
>gi|254247470|ref|ZP_04940791.1| hypothetical protein BCPG_02268 [Burkholderia cenocepacia PC184]
gi|124872246|gb|EAY63962.1| hypothetical protein BCPG_02268 [Burkholderia cenocepacia PC184]
Length = 382
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 63/374 (16%), Positives = 121/374 (32%), Gaps = 28/374 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYITFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L + + L I T L+ +
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLAANQALRSLLKIGVPLVIVTYLIGEFVGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + Q W+ + + Q F+ + P++ I +
Sbjct: 125 ADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTI-SNVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP------------------I 221
D K ++ + + A LK V E + I +
Sbjct: 184 IYEFDSKFQLQNVRIAQTGRYEPPGHWLLKGVTETELTPIKPITGQPADALNPVYRSQQV 243
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
L + S + + + + N R + + ++ P
Sbjct: 244 SLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHL-RENQQDTQRYDIALWRKLLYP 302
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ M +++ + +R+ + V GI G + T+ G A
Sbjct: 303 FAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAPLTAA 362
Query: 342 IPVILTISLSILIL 355
P ++ ++L + L
Sbjct: 363 TPGLIYLALGLFAL 376
>gi|260494012|ref|ZP_05814143.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
gi|260198158|gb|EEW95674.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
Length = 363
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 58/365 (15%), Positives = 128/365 (35%), Gaps = 9/365 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + +P
Sbjct: 1 MIKKMDIYVSKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLVG-GEILDYILNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ + +
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFIN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I T + D K + I+N +++ +I E + E+
Sbjct: 120 NSIYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLYLM-GEINRETGVAENIE 178
Query: 181 SITIDKK-NKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKM 234
+ D + +K A A +K V Y + + L
Sbjct: 179 VVKFDTEISKPKEIITAKSAKFDTEENKWIFSNVNIYNVDTKETITKTEYKSKLYKDDPS 238
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + +E + E+ K + KS ++ P + I SV
Sbjct: 239 NFIRASAEDPRMLTIKELKKTIKEQ-KSIGEDTRIYLSELAKRYSFPFASFIVAFIGLSV 297
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S ++ R + + + + +G+ Y + ++ +GIL P A+ IP IL + + I
Sbjct: 298 SSKYVRGGRTTMNLVICVIAGYGYYLVSGAFEAMSLNGILNPFIASWIPNILYLIIGIYF 357
Query: 355 LLQKE 359
+ + E
Sbjct: 358 MNRAE 362
>gi|114798132|ref|YP_760297.1| putative permease [Hyphomonas neptunium ATCC 15444]
gi|114738306|gb|ABI76431.1| putative permease [Hyphomonas neptunium ATCC 15444]
Length = 351
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 68/362 (18%), Positives = 136/362 (37%), Gaps = 17/362 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY +L+ L + + L+ V+D +++ R+P
Sbjct: 1 MTSRLSRYLSWLFLQRLLVTVFALVALLGVLDALSNADKLP--AGAGFEGQMRYMWLRLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW---QLLNPFVVGSILLGIFTV 117
+ +I+ F L+ ++ + +L R +ELV A GIS++ + L P V + + F +
Sbjct: 59 ALFDRIVVFAFLLAALLTYASLIRRNELVAISAAGISVFGQMRTLIPVVFLTAVAAAFII 118
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ P A+ + +D ++ W+ I K + E
Sbjct: 119 DTVGPPASRSLLAWLGPEALQEDAQVPEE----LWL----SDGKFLIELKSMQAEE--LT 168
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
T + + ++ A+ A + L + ++ P + T P +
Sbjct: 169 GITIFERNAEGAVVAITTAETARPADGGWALSGTGQRRFDGEP-PTDMTFWTSPQTPESL 227
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q + +I +S S + E ++PL V L+A V
Sbjct: 228 QLLLSPPRDLAISNLIA-LSEMRGSGSRPSGAYELWALNRFLLPLTAVGFLLLAVPVMQV 286
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ R + I VA G+ GF + I+K+ ++G + P+ A +P++ S+ + L+
Sbjct: 287 YGRRSNADIAVAAGVAVGFFYMVVDGILKTLAENGSISPILAVALPILALFLGSMWLALE 346
Query: 358 KE 359
+E
Sbjct: 347 RE 348
>gi|323978946|gb|EGB74026.1| permease YjgP/YjgQ family protein [Escherichia coli TW10509]
Length = 359
Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL I + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFMLVALSL 351
>gi|238028371|ref|YP_002912602.1| hypothetical protein bglu_1g28320 [Burkholderia glumae BGR1]
gi|237877565|gb|ACR29898.1| Hypothetical protein bglu_1g28320 [Burkholderia glumae BGR1]
Length = 382
Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats.
Identities = 61/374 (16%), Positives = 123/374 (32%), Gaps = 28/374 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G Y+ + A + P +I
Sbjct: 6 KYFARQIYLTFIFVLFAFSGLFFFFDLISELNSVGH-GAYNFGYAVLRVALQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP TL+ I VF + SE I R G++ Q L + + L I T L+ I
Sbjct: 65 IPVATLISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEFIGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + + + W+ + + F+ + P++ I +
Sbjct: 125 TDQLSERVRLEALGSSVSSNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTI-SNVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP------------------I 221
D K ++ + + A L V + Q IP +
Sbjct: 184 IYEFDSKFQLQNVRIAKSGRYAPPGHWLLTDVTDTQLTPIPPDSHAPKDALNPVYRSEQV 243
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
+L + S + + + + + N + + ++ P
Sbjct: 244 SMPQYSLRSDLTPQILSVLLVSPERMSIFNLFRYIQHL-RENQQDTQTYDIALWRKLLYP 302
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ M +++ + +R+ + V GI G T+ G A
Sbjct: 303 FAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPLTAA 362
Query: 342 IPVILTISLSILIL 355
+P ++ ++L + L
Sbjct: 363 LPALIYLALGLFAL 376
>gi|167580135|ref|ZP_02373009.1| hypothetical protein BthaT_18420 [Burkholderia thailandensis TXDOH]
Length = 383
Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats.
Identities = 62/375 (16%), Positives = 121/375 (32%), Gaps = 29/375 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQAPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L V + + I T L+ I
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEFIGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + + + W+ + + F+ + P++ I D
Sbjct: 125 SDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTI-SDVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP------------------- 220
D K + + + A L V + Q +
Sbjct: 184 IYEFDSKFNLQNVRIAKSGRYQPPGHWLLTDVTDTQLTNLAGNGATAPNDTLNPVYRAQQ 243
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+ +L + S + + + + K N R + + ++
Sbjct: 244 VTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHL-KENQQDTQRYDIALWRKLLY 302
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
P ++ M +++ + +R+ + V GI G T+ G A
Sbjct: 303 PFAVLVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPLTA 362
Query: 341 LIPVILTISLSILIL 355
+P + ++L + L
Sbjct: 363 ALPGCIYLALGLFAL 377
>gi|161524005|ref|YP_001579017.1| permease YjgP/YjgQ family protein [Burkholderia multivorans ATCC
17616]
gi|189351234|ref|YP_001946862.1| YjgP/YjgQ-like transporter [Burkholderia multivorans ATCC 17616]
gi|160341434|gb|ABX14520.1| permease YjgP/YjgQ family protein [Burkholderia multivorans ATCC
17616]
gi|189335256|dbj|BAG44326.1| YjgP/YjgQ-like transporter [Burkholderia multivorans ATCC 17616]
Length = 382
Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats.
Identities = 64/374 (17%), Positives = 123/374 (32%), Gaps = 28/374 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L + + L I T L+ +
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEFVGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + Q W+ + + Q F+ + P++ I +
Sbjct: 125 ADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLAPDSTI-SNVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQY-------GRIP-----------I 221
D K ++ + + A LK V E + G+ P +
Sbjct: 184 IYEFDAKFQLKNVRIAQTGRYEPPGHWLLKGVTETELTPIQPIAGQAPDALNPVYRSQQV 243
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
L + S + + + + N R + + ++ P
Sbjct: 244 SLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHL-RENHQDTQRYDIALWRKLLYP 302
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ M +++ + +R+ + V GI G + T+ G A
Sbjct: 303 FAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAPLTAA 362
Query: 342 IPVILTISLSILIL 355
P ++ ++L + L
Sbjct: 363 TPGLIYLALGLFAL 376
>gi|53718605|ref|YP_107591.1| putative permease [Burkholderia pseudomallei K96243]
gi|167814687|ref|ZP_02446367.1| putative permease protein [Burkholderia pseudomallei 91]
gi|167909936|ref|ZP_02497027.1| putative permease protein [Burkholderia pseudomallei 112]
gi|52209019|emb|CAH34959.1| putative permease protein [Burkholderia pseudomallei K96243]
Length = 383
Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats.
Identities = 63/375 (16%), Positives = 120/375 (32%), Gaps = 29/375 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 RYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQAPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L V + + I T L+ I
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEFIGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + + + W+ + + F+ + P++ I D
Sbjct: 125 SDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTI-SDVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP------------------- 220
D K + + + A L V + Q +
Sbjct: 184 IYEFDSKFNLQNVRIAKRGHYQPPGHWLLTDVTDTQLTSLAGNGTASPVDTLNPVYRAQQ 243
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+ +L + S + + + + K N R + + ++
Sbjct: 244 VTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHL-KENQQDTQRYDIALWRKLLY 302
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
P + M +++ + +R+ + V GI G T+ G A
Sbjct: 303 PFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPLTA 362
Query: 341 LIPVILTISLSILIL 355
+P + ++L + L
Sbjct: 363 ALPGCIYLALGLFAL 377
>gi|78067268|ref|YP_370037.1| YjgP/YjgQ like transporter [Burkholderia sp. 383]
gi|77968013|gb|ABB09393.1| YjgP/YjgQ like transporter [Burkholderia sp. 383]
Length = 382
Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats.
Identities = 63/374 (16%), Positives = 121/374 (32%), Gaps = 28/374 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L + + L I T L+ +
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIITYLIGEFVGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + Q W+ + + Q F+ + P++ I +
Sbjct: 125 ADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTI-SNVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP------------------I 221
D K ++ + + A LK V E + I +
Sbjct: 184 IYEFDSKFQLRNVRIAQTGRYEPPGHWLLKGVTETELTPIKPISGQPADALNPVYRSQQV 243
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
L + S + + + + N R + + ++ P
Sbjct: 244 SLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHL-RENQQDTQRYDIALWRKLLYP 302
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ M +++ + +R+ + V GI G + T+ G A
Sbjct: 303 FAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAPLTAA 362
Query: 342 IPVILTISLSILIL 355
P ++ ++L + L
Sbjct: 363 TPGLIYLALGLFAL 376
>gi|221199306|ref|ZP_03572350.1| putative membrane protein [Burkholderia multivorans CGD2M]
gi|221205792|ref|ZP_03578807.1| putative membrane protein [Burkholderia multivorans CGD2]
gi|221174630|gb|EEE07062.1| putative membrane protein [Burkholderia multivorans CGD2]
gi|221180591|gb|EEE12994.1| putative membrane protein [Burkholderia multivorans CGD2M]
Length = 382
Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats.
Identities = 64/374 (17%), Positives = 123/374 (32%), Gaps = 28/374 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L + + L I T L+ +
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEFVGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + Q W+ + + Q F+ + P++ I +
Sbjct: 125 ADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLAPDSTI-SNVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQY-------GRIP-----------I 221
D K ++ + + A LK V E + G+ P +
Sbjct: 184 IYEFDAKFQLKNVRIAQTGRYEPPGHWLLKGVTETELTPIRPIAGQAPDALNPVYRSQQV 243
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
L + S + + + + N R + + ++ P
Sbjct: 244 SLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHL-RENHQDTQRYDIALWRKLLYP 302
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ M +++ + +R+ + V GI G + T+ G A
Sbjct: 303 FAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAPLTAA 362
Query: 342 IPVILTISLSILIL 355
P ++ ++L + L
Sbjct: 363 TPGLIYLALGLFAL 376
>gi|301325677|ref|ZP_07219138.1| conserved hypothetical protein [Escherichia coli MS 78-1]
gi|300847532|gb|EFK75292.1| conserved hypothetical protein [Escherichia coli MS 78-1]
Length = 359
Score = 155 bits (393), Expect = 7e-36, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 129/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L + SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLAKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL I + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFMLVALSL 351
>gi|152998005|ref|YP_001342840.1| permease YjgP/YjgQ family protein [Marinomonas sp. MWYL1]
gi|150838929|gb|ABR72905.1| permease YjgP/YjgQ family protein [Marinomonas sp. MWYL1]
Length = 353
Score = 155 bits (393), Expect = 7e-36, Method: Composition-based stats.
Identities = 55/318 (17%), Positives = 118/318 (37%), Gaps = 13/318 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ +Y L L + + L F + E ++ + NY+I + R+P +
Sbjct: 4 IDKYIASSVLWAFLIVAVVLLGLDFALTFIEQIKKVND--NYTIQSLLQVILFRLPGKLA 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ IP +L+ ++ L TSEL + RA G+ IW++ +L+ + + V +A
Sbjct: 62 EYIPVASLIGTLMGLGTLAATSELTVMRAAGMPIWRIGFAACQPILLVSLLGMGVSEFVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ + + W++ N F+ +
Sbjct: 122 PVAEQKANLIEKFKGQESGAFSLTGGVWLKADND----FVYIDAADAVGT-LYGIQIFSP 176
Query: 185 DKKNKIIHRKDADLAIIYND-KVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQKF 240
D + ++ H A A + +L V E + ++K S N+ I +
Sbjct: 177 DGQ-QLKHIITATSAQHTEGSQWQLNNVTETIFAPDHVEKKSLEHANWNVSITPEHLFLA 235
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S++ + S ++ ++ + + + E +F+ + P+ +A+ L+A S R
Sbjct: 236 SQEPDALSLSQLKNYQTYLKQQKL-DGAQYELEFWITALRPIASLALVLVALSSVFGPLR 294
Query: 301 SNQPRIIVAYGIFSGFML 318
S+ + G+ G
Sbjct: 295 SSTMGGRIFTGVIIGLAF 312
>gi|256019097|ref|ZP_05432962.1| hypothetical protein ShiD9_09284 [Shigella sp. D9]
Length = 359
Score = 155 bits (393), Expect = 8e-36, Method: Composition-based stats.
Identities = 58/360 (16%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 DELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL I + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSL 351
>gi|260845739|ref|YP_003223517.1| hypothetical protein ECO103_3663 [Escherichia coli O103:H2 str.
12009]
gi|257760886|dbj|BAI32383.1| conserved predicted membrane protein [Escherichia coli O103:H2 str.
12009]
Length = 359
Score = 155 bits (393), Expect = 8e-36, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 DELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|170697654|ref|ZP_02888742.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria IOP40-10]
gi|170137402|gb|EDT05642.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria IOP40-10]
Length = 382
Score = 155 bits (393), Expect = 8e-36, Method: Composition-based stats.
Identities = 63/374 (16%), Positives = 121/374 (32%), Gaps = 28/374 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L + I L I T ++ +
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGIPLVIITYMIGEFVGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + Q W+ + + Q F+ + P++ I +
Sbjct: 125 ADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGNLSPDSTI-SNVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP------------------I 221
D K ++ + + A LK V E + I +
Sbjct: 184 IYEFDSKFQLQNVRIAQTGRYEPPGHWLLKGVTETELTPIKPISGAPADALNPVYRSQQV 243
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
L + S + + + + N R + + ++ P
Sbjct: 244 TLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHL-RENQQDTQRYDIALWRKLLYP 302
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ M +++ + +R+ + V GI G + T+ G A
Sbjct: 303 FAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAPLTAA 362
Query: 342 IPVILTISLSILIL 355
P ++ ++L + L
Sbjct: 363 TPGLIYLALGLFAL 376
>gi|115352568|ref|YP_774407.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria AMMD]
gi|172061427|ref|YP_001809079.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MC40-6]
gi|115282556|gb|ABI88073.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria AMMD]
gi|171993944|gb|ACB64863.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MC40-6]
Length = 382
Score = 155 bits (393), Expect = 8e-36, Method: Composition-based stats.
Identities = 63/374 (16%), Positives = 120/374 (32%), Gaps = 28/374 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYVTFIFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L + I L I T L+ +
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGIPLVIITYLIGEFVGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + Q W+ + + Q F+ + P++ I +
Sbjct: 125 ADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGNLSPDSTI-SNVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP------------------I 221
D K ++ + + A L V E + I +
Sbjct: 184 IYEFDSKFQLQNVRIAQTGRYEPPGHWLLTGVTETELTPIKPISGAPADALNPVYRSQQV 243
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
L + S + + + + N R + + ++ P
Sbjct: 244 TLPEYRLRSDLTPQILSVLLVSPERMSLINLFRYIQHL-RENQQDTQRYDIALWRKLLYP 302
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ M +++ + +R+ + V GI G + T+ G A
Sbjct: 303 FAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAPLTAA 362
Query: 342 IPVILTISLSILIL 355
P ++ ++L + L
Sbjct: 363 TPGLIYLALGLFAL 376
>gi|194431684|ref|ZP_03063975.1| putative permease, YjgP/YjgQ family [Shigella dysenteriae 1012]
gi|194420040|gb|EDX36118.1| putative permease, YjgP/YjgQ family [Shigella dysenteriae 1012]
gi|320180990|gb|EFW55911.1| Permease Ygh-P2, YjgP/YjgQ family [Shigella boydii ATCC 9905]
gi|332086635|gb|EGI91775.1| hypothetical protein SB521682_3569 [Shigella boydii 5216-82]
gi|332088218|gb|EGI93339.1| hypothetical protein SD15574_3351 [Shigella dysenteriae 155-74]
Length = 359
Score = 155 bits (393), Expect = 8e-36, Method: Composition-based stats.
Identities = 58/360 (16%), Positives = 131/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++A +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVALMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWVLHGVNHKKWLNGKETLETSDNLAWQSAFTSMDL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL I + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSL 351
>gi|126441903|ref|YP_001058063.1| hypothetical protein BURPS668_1013 [Burkholderia pseudomallei 668]
gi|126221396|gb|ABN84902.1| putative membrane protein [Burkholderia pseudomallei 668]
Length = 383
Score = 155 bits (393), Expect = 8e-36, Method: Composition-based stats.
Identities = 63/375 (16%), Positives = 120/375 (32%), Gaps = 29/375 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 RYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQAPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L V + + I T L+ I
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEFIGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + + + W+ + + F+ + P++ I D
Sbjct: 125 SDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTI-SDVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP------------------- 220
D K + + + A L V + Q +
Sbjct: 184 IYEFDSKFNLQNVRIAKRGHYQPPGHWLLTDVTDTQLTSLAGNGAASPVDTLNPVYRAQQ 243
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+ +L + S + + + + K N R + + ++
Sbjct: 244 VTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHL-KENQQDTQRYDIALWRKLLY 302
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
P + M +++ + +R+ + V GI G T+ G A
Sbjct: 303 PFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPLTA 362
Query: 341 LIPVILTISLSILIL 355
+P + ++L + L
Sbjct: 363 ALPGCIYLALGLFAL 377
>gi|116690488|ref|YP_836111.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia HI2424]
gi|170733809|ref|YP_001765756.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia MC0-3]
gi|116648577|gb|ABK09218.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia HI2424]
gi|169817051|gb|ACA91634.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia MC0-3]
Length = 382
Score = 155 bits (393), Expect = 8e-36, Method: Composition-based stats.
Identities = 63/374 (16%), Positives = 121/374 (32%), Gaps = 28/374 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYITFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L + + L I T L+ +
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEFVGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + Q W+ + + Q F+ + P++ I +
Sbjct: 125 ADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTI-SNVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP------------------I 221
D K ++ + + A LK V E + I +
Sbjct: 184 IYEFDSKFQLQNVRIAQTGRYEPPGHWLLKGVTETELTPIKPITGQPADALNPVYRSQQV 243
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
L + S + + + + N R + + ++ P
Sbjct: 244 SLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHL-RENQQDTQRYDIALWRKLLYP 302
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ M +++ + +R+ + V GI G + T+ G A
Sbjct: 303 FAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAPLTAA 362
Query: 342 IPVILTISLSILIL 355
P ++ ++L + L
Sbjct: 363 TPGLIYLALGLFAL 376
>gi|326567797|gb|EGE17901.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis 12P80B1]
Length = 369
Score = 155 bits (393), Expect = 9e-36, Method: Composition-based stats.
Identities = 61/373 (16%), Positives = 139/373 (37%), Gaps = 28/373 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y + L ++G ++ V + + E Y+++ + R P +
Sbjct: 5 ILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNISE--TYTLTDALLFILYRSPYFL 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q IP TL+ ++ L SEL++ RA G+SI+++++ ++ +++ ++ V +
Sbjct: 63 VQFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGVNQFV 122
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + DK + W + + E +
Sbjct: 123 LPTANQHAATIRAD--TIYDKLITIDGYWSVNHDGDNQDVVYISYADNEGG-LGEVKRYQ 179
Query: 184 IDKKNKIIHRKDADLAIIYNDK------------VKLKKVVEYQYGRIPIDKNSTTLNI- 230
+ K ++I A + +L + E G + + + I
Sbjct: 180 L-KDGQLIAALKAKSGVYLPQSDDVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKIL 238
Query: 231 -----PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
P + K E + S Y + M+ ++ R E F+ ++ P ++
Sbjct: 239 TLPIAPTDVYLLTKEPEDLSLSSLYAHRQLMAHQGTRSL----RHELAFWQKLLSPFAVL 294
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++ L+A+S RS + V + +G + + + + L P+ AL+P++
Sbjct: 295 SLVLVASSFVFGSLRSQGLALRVVLALLTGLLFSYLTDLTGFVALATGLSPLLMALVPIV 354
Query: 346 LTISLSILILLQK 358
L+ + +L +K
Sbjct: 355 LSAMAGMYLLNRK 367
>gi|323173776|gb|EFZ59405.1| hypothetical protein ECLT68_2094 [Escherichia coli LT-68]
Length = 359
Score = 155 bits (393), Expect = 9e-36, Method: Composition-based stats.
Identities = 58/360 (16%), Positives = 132/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R++G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 DELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G +L AL I + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFVLSAPVTALGLPIAFVLVALSL 351
>gi|237736827|ref|ZP_04567308.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
gi|229420689|gb|EEO35736.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
Length = 360
Score = 155 bits (393), Expect = 9e-36, Method: Composition-based stats.
Identities = 52/366 (14%), Positives = 122/366 (33%), Gaps = 17/366 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y K ++K+ + L+ M + V L + + + ++ T +P
Sbjct: 2 KIIDKYISKNFIKSFMLSLMAFMGIFIVSQLFRVVKYLSD-GRFTPGDAVYYIITLLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ +++ ++ E++ + GI +++ ++ S ++ V +
Sbjct: 61 FIDVAPLAVLLGSMMTISSMASNLEIISLKTSGIKFRRIVLFPIIISAIISGVVFFVNDT 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ KI DL +++ + +K+ E E+ +
Sbjct: 121 LYPISLKINRDLRSGEVQKRVAPLEKRNAFLR--GEDSNYIYLMQKVNRETGFAENIEIV 178
Query: 183 TIDKKNKIIHR-KDADLAIIYNDK--VKLKKVVEYQYGRIPIDK------NSTTLNIPIK 233
++K I R A K LK V Y + +S + P
Sbjct: 179 DLNKSFDKIERIITAPEGRYNFGKKVWMLKDVNIYYGDDNKKPETKEFFSDSKYGDNPEH 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + I++M KS + P ++ + +
Sbjct: 239 FITLTVEPRTLTIKDLKKTIREM----KSIGGDTRELLVELGNRYSFPFASFVISFLGLA 294
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + R + + + G+ Y + ++ +G L P IP I+ + + I
Sbjct: 295 LGGRYVR-GTSAVSLGICVLLGYGYYVVQASFEALSANGFLNPFVGGWIPNIMFLVVGIY 353
Query: 354 ILLQKE 359
+L + E
Sbjct: 354 LLNKAE 359
>gi|222034702|emb|CAP77444.1| hypothetical protein LF82_487 [Escherichia coli LF82]
gi|312947540|gb|ADR28367.1| hypothetical protein NRG857_14785 [Escherichia coli O83:H1 str. NRG
857C]
Length = 359
Score = 155 bits (393), Expect = 9e-36, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 129/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDK----NSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL I + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSL 351
>gi|307310386|ref|ZP_07590034.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|306909281|gb|EFN39776.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|315062298|gb|ADT76625.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|323377117|gb|ADX49385.1| permease YjgP/YjgQ family protein [Escherichia coli KO11]
Length = 359
Score = 155 bits (393), Expect = 9e-36, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSS-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 DELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|83720791|ref|YP_441377.1| hypothetical protein BTH_I0821 [Burkholderia thailandensis E264]
gi|167618241|ref|ZP_02386872.1| hypothetical protein BthaB_18181 [Burkholderia thailandensis Bt4]
gi|257139950|ref|ZP_05588212.1| hypothetical protein BthaA_12230 [Burkholderia thailandensis E264]
gi|83654616|gb|ABC38679.1| membrane protein, putative [Burkholderia thailandensis E264]
Length = 383
Score = 155 bits (393), Expect = 9e-36, Method: Composition-based stats.
Identities = 62/375 (16%), Positives = 120/375 (32%), Gaps = 29/375 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQAPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L V + + I T L+ I
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEFIGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + + + W+ + + F+ + P++ I D
Sbjct: 125 SDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTI-SDVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP------------------- 220
D K + + + A L V + Q +
Sbjct: 184 IYEFDSKFNLQNVRIAKSGRYQPPGHWLLTDVTDTQLTNLAGNGATAPNDTLNPVYRAQQ 243
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+ +L + S + + + + K N R + + ++
Sbjct: 244 VTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHL-KENQQDTQRYDIALWRKLLY 302
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
P + M +++ + +R+ + V GI G T+ G A
Sbjct: 303 PFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPLTA 362
Query: 341 LIPVILTISLSILIL 355
+P + ++L + L
Sbjct: 363 ALPGCIYLALGLFAL 377
>gi|300973447|ref|ZP_07172203.1| conserved hypothetical protein [Escherichia coli MS 45-1]
gi|301048206|ref|ZP_07195242.1| conserved hypothetical protein [Escherichia coli MS 185-1]
gi|300299964|gb|EFJ56349.1| conserved hypothetical protein [Escherichia coli MS 185-1]
gi|300410789|gb|EFJ94327.1| conserved hypothetical protein [Escherichia coli MS 45-1]
gi|315291259|gb|EFU50619.1| conserved hypothetical protein [Escherichia coli MS 153-1]
Length = 359
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 128/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 GASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ + + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETQETSDYLAWQSTFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|262068069|ref|ZP_06027681.1| permease, YjgP/YjgQ family [Fusobacterium periodonticum ATCC 33693]
gi|291378155|gb|EFE85673.1| permease, YjgP/YjgQ family [Fusobacterium periodonticum ATCC 33693]
Length = 363
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 61/366 (16%), Positives = 129/366 (35%), Gaps = 11/366 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y KY++K L ++G M + + +I + + +P
Sbjct: 1 MIKKLDIYISKYFIKYFLMNIIGFMGVFLLAQTFKIIKYINQ-GKLEGGEIFDYILNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ +F V
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLFVFFVN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I T + D + I+N I++ I E + E
Sbjct: 120 NSIYTKSLAKINFYRKGEIDASLRLPKTKENAFFINNNDGYIYLM-GNINRETGLAEKVE 178
Query: 181 SITIDKK-NKIIHRKDADLAII--YNDKVKLKKV----VEYQYGRIPIDKNSTTLNIPIK 233
+ D + +K + A N K L V VE + ++ +S
Sbjct: 179 IVVYDTEISKPVEIITAQSGKYDKENKKWLLSGVNIYNVETKKSITKVEYDSDRFGEDPN 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + +E + E+ K + K+ ++ P + I S
Sbjct: 239 -NFIRAAAEDPRMLTIKELKKTIKEQ-KNIGEDTRIYLSELAKRYSFPFASFIVAFIGLS 296
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
VS ++ R + I + + +G+ Y + ++ +GIL P ++ IP IL + +
Sbjct: 297 VSSKYVRGGRTTINLVICVVAGYGYYLVSGAFEAMSLNGILNPFISSWIPNILYFIIGMY 356
Query: 354 ILLQKE 359
+ + E
Sbjct: 357 FMNRAE 362
>gi|258648441|ref|ZP_05735910.1| putative membrane protein [Prevotella tannerae ATCC 51259]
gi|260851193|gb|EEX71062.1| putative membrane protein [Prevotella tannerae ATCC 51259]
Length = 428
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 61/369 (16%), Positives = 131/369 (35%), Gaps = 19/369 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR-V 59
+ L RY +L T ++ + + + + D NE ++ E + S ++ A +
Sbjct: 66 LLTRLDRYIIYKFLSTYIFLIGIIISIAIIFDYNEKIDKF-EKAHVSWTKIAFDYYLNFI 124
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P P + I L SE++ ++ G+S +LL P+++ + ++ + + +
Sbjct: 125 PYFSNLFSPLFVFIAVIFFTSKLADNSEIIAMKSTGMSFRRLLRPYMISAAIIALTSFGL 184
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ G ++ ++ + S MQ+ + + + E F
Sbjct: 185 GAYVIPKGNVARVNFENRYIKKLNAPTSVENVQMQVDTG---VVVYISRFDNETKSGYGF 241
Query: 180 TSITIDKKNKI----IHRKDADLAIIYNDKVKLKKVVEYQY----GRIPIDKNSTTLNIP 231
+ K I D ++ L++V + + RI T+ +
Sbjct: 242 SLDKFYGKKLIDHLTAQSIQYDTLAGKKNQWTLRQVQQRKMRGLRERISYADKVDTIIMM 301
Query: 232 IKMDGF--QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
D F + E + I K + + E +++ +P +TL
Sbjct: 302 EPQDFFYVRNQQETMTVPELRQFIDKQQMRGAAGV---SLFEVEYHKRFAMPFAAFILTL 358
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
I S+S + R N + GI F TI SF + P+ + IP +L +
Sbjct: 359 IGVSLSSQK-RKNGMGTSIGVGIALSFSYILFQTISSSFAVNANWSPMLSVWIPNLLFVL 417
Query: 350 LSILILLQK 358
++ + +
Sbjct: 418 IAFGLYKRT 426
>gi|332280200|ref|ZP_08392613.1| YjgP/YjgQ permease [Shigella sp. D9]
gi|332102552|gb|EGJ05898.1| YjgP/YjgQ permease [Shigella sp. D9]
Length = 386
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 58/360 (16%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 29 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 87
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 88 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 202
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 203 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDL 262
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D F+ R I + + + + + + P++ +AM L+A
Sbjct: 263 DELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 318
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL I + +++ +
Sbjct: 319 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSL 378
>gi|312131567|ref|YP_003998907.1| permease yjgp/yjgq family protein [Leadbetterella byssophila DSM
17132]
gi|311908113|gb|ADQ18554.1| permease YjgP/YjgQ family protein [Leadbetterella byssophila DSM
17132]
Length = 360
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/362 (14%), Positives = 129/362 (35%), Gaps = 19/362 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY K +L T ++ + ++++ VID E + E + + P
Sbjct: 4 IDRYLIKRFLTTYVFAVFIIVLVILVIDFVEKNDDFMETKPSNHAIFFDYYLNLAPYWAN 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I P + + + + +E++ G S +L+ P+ +GS ++ I++ +++
Sbjct: 64 YISPLMIFISTVFFTAKMASHTEIIAILGSGTSFRRLMLPYFIGSGIVAIYSFVMVGWFL 123
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
I+ ++ N I N ++ ++ DFT +
Sbjct: 124 PKANVPRIEFENKYIHNDFFFTGRDIHLAVQKN----VYAYLSSYDNSSNTAYDFTLEKV 179
Query: 185 DKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDKNSTTLN--------IPIKM 234
+ N+++ + A A + K KL + G + + P
Sbjct: 180 -ENNRLVEKLSARRATYDDSLKKWKLYDYNIRKIGISKDEMTYEAITPLDTSIKLYPSDF 238
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ E + I ++ + + ++Y P ++ ++++ V
Sbjct: 239 GNSKNRQETMTISQLEDYIDLINSRGAEGV---ETYKIEYYQRFATPFAVIILSIMGLIV 295
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S +R + +A G F+ + K ++G + P+ A +P I+ +S+++
Sbjct: 296 SARKAR-GGVGLQIAIGFVLAFLYIIFYILSKGIAEAGSMNPILAVWLPNIVFSIISVVM 354
Query: 355 LL 356
Sbjct: 355 YF 356
>gi|301628860|ref|XP_002943564.1| PREDICTED: lipopolysaccharide export system permease protein
lptG-like [Xenopus (Silurana) tropicalis]
Length = 350
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/347 (14%), Positives = 113/347 (32%), Gaps = 32/347 (9%)
Query: 33 LNEIQNQMGELPN-YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVIS 91
+ + + P Y +S + R+P + +++P L+ I V L ++SE I
Sbjct: 1 MIDELRWVSRAPGGYQLSHALLTVVLRLPNYLYELLPISVLIGTIYVMARLAQSSEFTIM 60
Query: 92 RAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIP 151
R G+ + L +V T + + +A + G L ++ G
Sbjct: 61 RTSGMGPGRALRMLLVLGCAFVALTFAMGDYVAPMANRAGQMLKVRYL--GQLTTGATGG 118
Query: 152 WMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII---------- 201
W++ + L + D + ++ + A A +
Sbjct: 119 WLKERKDDGHSLAVNVRALGPDGQMIGIRIFDFDDQGRLSAQLQAASAQVAQTAQTAQTA 178
Query: 202 ----YNDKVKLKKVVEYQY------GRIPIDKNSTTLNIPIKMDGFQKF-----SEQFAS 246
L + + ++ +S ++ P + E+ +
Sbjct: 179 EDAADAPGWVLTQAQQRRFVLRGADQAHVEQTDSASMRWPTGITAEMVSAALLKPERMPT 238
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
++ I + + +S + E +F+ + PL + M ++A + RS
Sbjct: 239 IELFQYISHLEANGQS----AQKYEIEFWRKVFYPLSCLVMVVLALPFAYLHFRSGGLAA 294
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
V G+ +G + + T+ G P A P ++ + S+
Sbjct: 295 YVFGGVMAGISFFLLNTVSGYAGTLQNWSPWLTAAAPGLIYSAASLA 341
>gi|329962824|ref|ZP_08300709.1| permease, YjgP/YjgQ family [Bacteroides fluxus YIT 12057]
gi|328529381|gb|EGF56294.1| permease, YjgP/YjgQ family [Bacteroides fluxus YIT 12057]
Length = 378
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 59/363 (16%), Positives = 124/363 (34%), Gaps = 20/363 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T ++ + + + V D NE ++ + +P
Sbjct: 20 LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWNAIVFDYYLNFIPY 79
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S ++L P++V + ++ I T + +
Sbjct: 80 FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAIVTFSLGS 139
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G I+ ++ + I ++ ++ + F+
Sbjct: 140 YVIPRGSVTRINFEDKYYKPRKANTARNI----QLEVDSNVIAYIERFEDYSKTGYRFSL 195
Query: 182 ITIDKKNKII----HRKDADLAIIYNDKVKLKKVVEYQYGRIPID------KNSTTLNIP 231
K + D A I+ K +K + + + ++T P
Sbjct: 196 DKFRDKQLVSHLTARSITYDTASIH--KWTIKDYMIREMDGMKESITKGDRIDTTLFMEP 253
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ E S E I + +NI E +++ I + +TLI
Sbjct: 254 ADFLIMKNQQEMLTSPQLSEYIDRQRQRGFANI---KEFEIEYHKRIAMSFASFILTLIG 310
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S + ++ + + G+ F TI +F +G + PV A IP +L ++
Sbjct: 311 VSLSSKKTK-GGMGLHLGIGLALSFSYILFQTIASTFAVNGNVPPVIAVWIPNVLYTFIA 369
Query: 352 ILI 354
+
Sbjct: 370 FYL 372
>gi|206561016|ref|YP_002231781.1| putative permease [Burkholderia cenocepacia J2315]
gi|198037058|emb|CAR52979.1| putative permease protein [Burkholderia cenocepacia J2315]
Length = 382
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 63/374 (16%), Positives = 121/374 (32%), Gaps = 28/374 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYITFIFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L + + L I T L+ +
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEFVGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + Q W+ + + Q F+ + P++ I +
Sbjct: 125 ADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTI-SNVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP------------------I 221
D K ++ + + A LK V E + I +
Sbjct: 184 IYEFDSKFQLQNVRIAQTGRYEPPGHWLLKGVTETELTPIKPISGQPADALNPVYRSQQV 243
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
L + S + + + + N R + + ++ P
Sbjct: 244 SLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHL-RENQQDTQRYDIALWRKLLYP 302
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ M +++ + +R+ + V GI G + T+ G A
Sbjct: 303 FAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAPLTAA 362
Query: 342 IPVILTISLSILIL 355
P ++ ++L + L
Sbjct: 363 TPGLIYLALGLFAL 376
>gi|167561902|ref|ZP_02354818.1| hypothetical protein BoklE_05005 [Burkholderia oklahomensis EO147]
gi|167569154|ref|ZP_02362028.1| hypothetical protein BoklC_04865 [Burkholderia oklahomensis C6786]
Length = 382
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 61/374 (16%), Positives = 122/374 (32%), Gaps = 28/374 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYVTFVFVLFAFSGLFFFFDLIGELNSVGH-GNYKFGYAVLRVALQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ +I VF + SE I R G++ Q L + + + I T L+ I
Sbjct: 65 IPVAALISSIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPIVIATYLIGEFIGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + + + W+ + + F+ ++ P++ I D
Sbjct: 125 SDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGQLSPDSTI-SDVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP------------------I 221
D K + + + A L V + Q + +
Sbjct: 184 IYEFDSKFNLQNVRIAKRGRYQPPGHWLLTDVTDTQLTNVSGAGGQPADALNPVYRARQV 243
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
+L + S + + + + K N R + + ++ P
Sbjct: 244 TLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHL-KENQQDTQRYDIALWRKLLYP 302
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ M +++ + +R+ + V GI G T+ G A
Sbjct: 303 FAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPLTAA 362
Query: 342 IPVILTISLSILIL 355
+P + ++L + L
Sbjct: 363 LPGCIYLALGLFAL 376
>gi|288803319|ref|ZP_06408752.1| membrane protein [Prevotella melaninogenica D18]
gi|288334139|gb|EFC72581.1| membrane protein [Prevotella melaninogenica D18]
Length = 377
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 62/367 (16%), Positives = 128/367 (34%), Gaps = 20/367 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
GIL Y K ++ T +Y +L + + V D NE ++ + + A VP
Sbjct: 17 IGILDWYIIKKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFVPY 76
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ A G+SI +L+ P+++ +L+ T + +
Sbjct: 77 YSNLFSPLFVFIAVIFFTSKLAGNSEIISMMAAGVSIRRLMRPYMISCVLIAGLTFYLNS 136
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G I + ++++ ++ + ++ + + F+
Sbjct: 137 FVIPHGTVIRQNFESLYRNSKKNTSAENV----QLFVAKNTTAYIQHYDDQYKRGYGFSL 192
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-----VKLKKVVEYQYGRIPI------DKNSTTLNI 230
+ K KI+ A K+ + K++ L
Sbjct: 193 VK-TKNKKIVSHMTAMEIQYDTVADTKYHWKVSNWKIRTLKGLKEHIQSGASKDTVLLME 251
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P + + E F S E++ +S + + E +F+ I + +T+I
Sbjct: 252 PTDLVYSKGQQETFTSP---ELLNYISKQTSRGSGNVVQYEVEFHKRIAMSFSSFILTII 308
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
S+S R + + G+ F + T+ +F P+ AA IP I+ +
Sbjct: 309 GLSLSSRK-RKGGMGLYLGIGLALSFGYIMLQTVSATFAIQDDTPPILAAWIPNIIFAII 367
Query: 351 SILILLQ 357
+
Sbjct: 368 AYFCYRH 374
>gi|302345342|ref|YP_003813695.1| permease, YjgP/YjgQ family [Prevotella melaninogenica ATCC 25845]
gi|302149873|gb|ADK96135.1| permease, YjgP/YjgQ family [Prevotella melaninogenica ATCC 25845]
Length = 405
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 63/367 (17%), Positives = 128/367 (34%), Gaps = 20/367 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
GIL Y K ++ T +Y +L + + V D NE ++ + + A VP
Sbjct: 45 IGILDWYIIKKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFVPY 104
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ A G+SI +L+ P+++ IL+ T + +
Sbjct: 105 YSNLFSPLFVFIAVIFFTSKLAGNSEIISMMAAGMSIRRLMRPYMISCILIAGLTFYLNS 164
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G I + ++++ ++ + ++ + + F+
Sbjct: 165 FVIPHGTVIRQNFESLYRNSKKNTSAENV----QLFVAKNTTAYIQHYDDQYKRGYGFSL 220
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-----VKLKKVVEYQYGRIPI------DKNSTTLNI 230
+ K KI+ A K+ + K++ L
Sbjct: 221 VK-TKNKKIVSHMTAMEIQYDTVADTKYHWKVSNWKIRTLKGLKEHIQSGASKDTVLLME 279
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P + + E F S E++ +S + + E +F+ I + +T+I
Sbjct: 280 PTDLVYSKGQQETFTSP---ELLNYISKQTSRGSGNVVQYEVEFHKRIAMSFSSFILTII 336
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
S+S R + + G+ F + T+ +F P+ AA IP I+ +
Sbjct: 337 GLSLSSRK-RKGGMGLYLGIGLALSFGYIMLQTVSATFAIKDDTPPILAAWIPNIIFAII 395
Query: 351 SILILLQ 357
+
Sbjct: 396 AYFCYRH 402
>gi|293412357|ref|ZP_06655080.1| predicted protein [Escherichia coli B354]
gi|291469128|gb|EFF11619.1| predicted protein [Escherichia coli B354]
Length = 359
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 131/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIFARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ +G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIAGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|296327425|ref|ZP_06869972.1| YjgP/YjgQ family permease [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|296155438|gb|EFG96208.1| YjgP/YjgQ family permease [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 363
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 58/366 (15%), Positives = 129/366 (35%), Gaps = 11/366 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + + +P
Sbjct: 1 MIKKMDIYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQ-GKLAGGEIFDYILNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ +F V
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLFVFFVN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I T + D K + I+N + +++ KI E + E+
Sbjct: 120 NSIYTKSLAKINFYRRGEIDETLKLPTTKENAFFINNTEGYLYLM-GKINRETGLAENIE 178
Query: 181 SITIDKK-NKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI----K 233
+ + + +K A A +K V Y T +
Sbjct: 179 VVKFNTEISKPKEIITAKSAKFDTEENKWIFSNVNIYNV-ETKETTAKTEYKSNLYKDDP 237
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + +E + E+ K + K+ + P + I S
Sbjct: 238 SNFIRASAEDPRMLTIKELKKTIKEQ-KNIGEDTRIYLAELAKRYSFPFASFIVAFIGLS 296
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
VS ++ R + + + + +G+ Y + ++ +GIL P A+ +P IL + + I
Sbjct: 297 VSSKYVRGGRTTMNLVICVVAGYGYYLVSGAFEAMSLNGILNPFIASWVPNILYLIIGIY 356
Query: 354 ILLQKE 359
+ + E
Sbjct: 357 FMNRAE 362
>gi|237740742|ref|ZP_04571223.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
gi|229422759|gb|EEO37806.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
Length = 363
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 60/366 (16%), Positives = 128/366 (34%), Gaps = 11/366 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y KY++K L ++G M + + +I + + +P
Sbjct: 1 MIKKLDIYISKYFIKYFLMNIIGFMGVFLLAQTFKIIKYINQGKLVG-GEIFDYIINLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ +F V
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFIISLFVFFVN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I T + D + + I+N I++ I E E
Sbjct: 120 NSIYTKSLAKINFYRKGEIDASLRLPTTKENAFFINNTDGYIYLM-GNINRETGNAEKIE 178
Query: 181 SITIDKK-NKIIHRKDADLAIIY--NDKVKLKKV----VEYQYGRIPIDKNSTTLNIPIK 233
+ D + +K + A N K L V VE + ++ +S
Sbjct: 179 IVVYDTEISKPVEIITAQSGKYDKDNKKWMLSGVNIYNVETKKNITKVEYDSDRFREDPN 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + +E + E+ K + K+ + P + I S
Sbjct: 239 -NFIRAAAEDPRMLTIKELKKTIKEQ-KNIGEDTRIYLAELAKRYSFPFASFIVAFIGLS 296
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
VS ++ R + + + + +G+ Y + ++ +GIL P ++ IP IL + +
Sbjct: 297 VSSKYVRGGRTTLNLVICVVAGYGYYLVSGAFEAMSLNGILNPFISSWIPNILYFIIGMY 356
Query: 354 ILLQKE 359
+ + E
Sbjct: 357 FMNRAE 362
>gi|83746688|ref|ZP_00943737.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
UW551]
gi|207742607|ref|YP_002258999.1| permease protein [Ralstonia solanacearum IPO1609]
gi|83726641|gb|EAP73770.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
UW551]
gi|206594001|emb|CAQ60928.1| permease protein [Ralstonia solanacearum IPO1609]
Length = 401
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 56/399 (14%), Positives = 123/399 (30%), Gaps = 49/399 (12%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ +YF + ++ L + L D+ + + Y+ + P
Sbjct: 8 PVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSV--VGRYTTLIAFFHVMLQAPTR 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++IP L+ I VF + SE I R G+ L ++ L + T +
Sbjct: 66 VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRGALLSLFKIALPLALVTYVFGEF 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP--------QQDIFIGAKKILPENH 174
I E+ + + + W++ P + F+ + P+
Sbjct: 126 IGPKSEQFAQKVRLEALGATVSAEFRSGVWVKDRGPARPDGSGGEVTRFVNVGSLQPDQT 185
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNSTTLN---- 229
I D ++ + A A + +L V E + P +
Sbjct: 186 I-RSLRIYEFDADYRLSSIRVAQQARYQGHQSWELDDVTETHFIEFPRKAGAAAPQDNRQ 244
Query: 230 -----------------------------IPIKMDGFQKFSEQFASRSFYEIIKKMSFSN 260
P + E+ A+ ++ I+ + +
Sbjct: 245 AVPGAPDALAPDFRGEQTKLPKQEMRSELTPQILSVLMVTPERMATLDLFQYIRHLRDNK 304
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
+ R E + +V P ++ M +A + +R+ + V GI G
Sbjct: 305 Q----DTQRYEIALWKKVVYPFTVLVMMALALPFAYLHARAGAVGLKVFGGIMLGLSFQL 360
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + G + A++P L ++++++ L E
Sbjct: 361 VNNLFSHVGLLNTWPAIFTAIVPGALYLAVALIALRWVE 399
>gi|237744435|ref|ZP_04574916.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|229431664|gb|EEO41876.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
Length = 363
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 58/365 (15%), Positives = 128/365 (35%), Gaps = 9/365 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + +P
Sbjct: 1 MIKKMDIYVSKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLVG-GEILDYILNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ + +
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFIN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I T + D K + I+N +++ +I E + E+
Sbjct: 120 NSIYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNADGYLYLM-GEINRETGVAENIE 178
Query: 181 SITIDKK-NKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG- 236
+ + + +K A A +K V Y + + K D
Sbjct: 179 VVKFETEISKPKEIITAKSAKFDTEENKWIFSNVNIYNVDTKETITKTEYKSDLYKDDPS 238
Query: 237 --FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ +E + E+ K + KS ++ P + I SV
Sbjct: 239 SFIRASAEDPRMLTIKELKKTIKEQ-KSIGEDTRIYLSELAKKYSFPFASFIVAFIGLSV 297
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S ++ R + + + + +G+ Y + ++ +GIL P A+ IP IL + + I
Sbjct: 298 SSKYVRGGRTTMNLVICVIAGYGYYLVSGAFEAMSLNGILNPFIASWIPNILYLIIGIYF 357
Query: 355 LLQKE 359
+ + E
Sbjct: 358 MNRAE 362
>gi|107023406|ref|YP_621733.1| permease YjgP/YjgQ [Burkholderia cenocepacia AU 1054]
gi|105893595|gb|ABF76760.1| permease YjgP/YjgQ [Burkholderia cenocepacia AU 1054]
Length = 382
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 63/374 (16%), Positives = 122/374 (32%), Gaps = 28/374 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYITFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L + + L I T L+ +
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEFVGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + Q W+ + + Q F+ + P++ I +
Sbjct: 125 ADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTI-SNVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP------------------I 221
D K ++ + + A LK V E + I +
Sbjct: 184 IYEFDSKFQLQNVRIAQTGRYEPPGHWLLKGVTETELTPIKPITGQPADALNPVYRSQQV 243
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
L+ + S + + + + N R + + ++ P
Sbjct: 244 SLPEYRLHSDLTPQILSVLLVSPERMSIINLFRYIQHL-RENQQDTQRYDIALWRKLLYP 302
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ M +++ + +R+ + V GI G + T+ G A
Sbjct: 303 FAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAPLTAA 362
Query: 342 IPVILTISLSILIL 355
P ++ ++L + L
Sbjct: 363 TPGLIYLALGLFAL 376
>gi|326559486|gb|EGE09909.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis 7169]
gi|326568201|gb|EGE18283.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis BC8]
Length = 369
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 61/373 (16%), Positives = 139/373 (37%), Gaps = 28/373 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y + L ++G ++ V + + E Y+++ + R P +
Sbjct: 5 ILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNISE--TYTLTDALLFILYRSPYFL 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q IP TL+ ++ L SEL++ RA G+SI+++++ ++ +++ ++ V +
Sbjct: 63 VQFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGVNQFV 122
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + DK + W + + E +
Sbjct: 123 LPTANQHAAAIRAD--TIYDKLITIDGYWSVNHDGDNQDVVYISYADNEGG-LGEVKRYQ 179
Query: 184 IDKKNKIIHRKDADLAIIYNDK------------VKLKKVVEYQYGRIPIDKNSTTLNI- 230
+ K ++I A + +L + E G + + + I
Sbjct: 180 L-KDGQLIAALKAKSGVYLPQSDDVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKIL 238
Query: 231 -----PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
P + K E + S Y + M+ ++ R E F+ ++ P ++
Sbjct: 239 TLPIAPTDVYLLTKEPEDLSLSSLYAHRQLMAHQGTRSL----RHELAFWQKLLSPFAVL 294
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++ L+A+S RS + V + +G + + + + L P+ AL+P++
Sbjct: 295 SLVLVASSFVFGSLRSQGLALRVVLALLTGLLFSYLTDLTGFVALATGLSPLLMALVPIV 354
Query: 346 LTISLSILILLQK 358
L+ + +L +K
Sbjct: 355 LSAMAGMYLLNRK 367
>gi|270296760|ref|ZP_06202959.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270272747|gb|EFA18610.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 378
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 56/359 (15%), Positives = 128/359 (35%), Gaps = 12/359 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T ++ + + + V D NE ++ + +P
Sbjct: 20 LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWNAIVFDYYLNFIPY 79
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S ++L P++V + ++ + T + +
Sbjct: 80 FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVVTFCLGS 139
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G I+ ++ + I + ++ + F+
Sbjct: 140 YVIPKGSVTRINFEDKYYKPRKANTARNI----QLEVDSGVIAYIERFEDYSKTGYRFSL 195
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ K +++ A V K+ +Y ++ K S T I F + +
Sbjct: 196 DKFNDK-QLVSHLTARSITYDTTAVHKWKIKDYMIRQMDGMKESITKGDRIDTTLFMEPA 254
Query: 242 E------QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ Q + ++ + +S + + E +++ I + +TLI S+S
Sbjct: 255 DFLIMKNQQEMLTSPQLSEYISRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSLS 314
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ ++ + + G+ F TI +F +G + PV A IP I+ ++ +
Sbjct: 315 SKKTK-GGMGLHLGIGLALSFSYILFQTIASTFAVNGNMPPVIAVWIPNIMYAFIAFYL 372
>gi|300993118|ref|ZP_07180204.1| hypothetical protein HMPREF9553_04258 [Escherichia coli MS 200-1]
gi|300305133|gb|EFJ59653.1| hypothetical protein HMPREF9553_04258 [Escherichia coli MS 200-1]
Length = 359
Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 129/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 GASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|260857119|ref|YP_003231010.1| putative inner membrane protein [Escherichia coli O26:H11 str.
11368]
gi|257755768|dbj|BAI27270.1| predicted inner membrane protein [Escherichia coli O26:H11 str.
11368]
Length = 359
Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 129/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVVLVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDK----NSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIKDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFTAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|157162459|ref|YP_001459777.1| YjgP/YjgQ permease [Escherichia coli HS]
gi|188495921|ref|ZP_03003191.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
gi|209920455|ref|YP_002294539.1| hypothetical protein ECSE_3264 [Escherichia coli SE11]
gi|300815539|ref|ZP_07095763.1| conserved hypothetical protein [Escherichia coli MS 107-1]
gi|157068139|gb|ABV07394.1| putative permease, YjgP/YjgQ family [Escherichia coli HS]
gi|188491120|gb|EDU66223.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
gi|209913714|dbj|BAG78788.1| conserved hypothetical protein [Escherichia coli SE11]
gi|300531468|gb|EFK52530.1| conserved hypothetical protein [Escherichia coli MS 107-1]
gi|320201893|gb|EFW76468.1| Permease Ygh-P2, YjgP/YjgQ family [Escherichia coli EC4100B]
gi|323183568|gb|EFZ68965.1| hypothetical protein ECOK1357_3348 [Escherichia coli 1357]
gi|323946694|gb|EGB42715.1| YjgP/YjgQ permease [Escherichia coli H120]
gi|324018178|gb|EGB87397.1| hypothetical protein HMPREF9542_03233 [Escherichia coli MS 117-3]
gi|324119791|gb|EGC13671.1| YjgP/YjgQ permease [Escherichia coli E1167]
Length = 359
Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 DELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|19704365|ref|NP_603927.1| hypothetical protein FN1030 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19714617|gb|AAL95226.1| Hypothetical membrane-spanning protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 363
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 59/368 (16%), Positives = 130/368 (35%), Gaps = 15/368 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + + +P
Sbjct: 1 MIKKMDIYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQ-GKLAGGEIFDYILNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ +F V
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLFVFFVN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I T + D K + I+N + +++ KI E + E+
Sbjct: 120 NSIYTKSLAKINFYRRGEIDETLKLPTTKENAFFINNTEGYLYLM-GKINRETGLAENIE 178
Query: 181 SITIDKK-NKIIHRKDADLAII--YNDKVKLKKV----VEYQYGRIPIDKNSTTLNI-PI 232
+ + + +K A A +K V VE + I+ S P
Sbjct: 179 VVKFNTEISKPKEIITAKSAKFDTEENKWIFSNVNIYNVETKETTAKIEYKSNLYKDDPS 238
Query: 233 K-MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + + + IK+ + + P + I
Sbjct: 239 NFIKASAEDPRMLTIKELKKTIKEQKNIGE----DTRIYLAELAKRYSFPFASFIVAFIG 294
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
SVS ++ R + + + + +G+ Y + ++ +GIL P A+ +P IL + +
Sbjct: 295 LSVSSKYVRGGRTTMNLVICVVAGYGYYLVSGAFEAMSLNGILNPFIASWVPNILYLIIG 354
Query: 352 ILILLQKE 359
I + + E
Sbjct: 355 IYFMNRAE 362
>gi|256027206|ref|ZP_05441040.1| hypothetical protein PrD11_04301 [Fusobacterium sp. D11]
gi|289765183|ref|ZP_06524561.1| conserved hypothetical protein [Fusobacterium sp. D11]
gi|289716738|gb|EFD80750.1| conserved hypothetical protein [Fusobacterium sp. D11]
Length = 363
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 57/365 (15%), Positives = 128/365 (35%), Gaps = 9/365 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + +P
Sbjct: 1 MIKKMDIYVSKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLVG-GEILDYILNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ + +
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFIN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I T + D K + I+N +++ +I E + E+
Sbjct: 120 NSIYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNADGYLYLM-GEINRETGVAENIE 178
Query: 181 SITIDKK-NKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKM 234
+ + + +K A A +K V Y + + L
Sbjct: 179 VVKFETEISKPKEIITAKSAKFDTEENKWIFSNVNIYNVDTKETITKTEYKSKLYKDDPS 238
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + +E + E+ K + KS ++ P + I SV
Sbjct: 239 NFIRASAEDPRMLTIKELKKTIKEQ-KSIGEDTRIYLSELAKRYSFPFASFIVAFIGLSV 297
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S ++ R + + + + +G+ Y + ++ +GIL P A+ IP IL + + I
Sbjct: 298 SSKYVRGGRTTMNLVICVIAGYGYYLVSGAFEAMSLNGILNPFIASWIPNILYLIIGIYF 357
Query: 355 LLQKE 359
+ + E
Sbjct: 358 MNRAE 362
>gi|320195129|gb|EFW69758.1| Permease Ygh-P2, YjgP/YjgQ family [Escherichia coli WV_060327]
Length = 359
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 129/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDNDIIGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|291284362|ref|YP_003501180.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O55:H7 str. CB9615]
gi|290764235|gb|ADD58196.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O55:H7 str. CB9615]
gi|320656363|gb|EFX24270.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320661734|gb|EFX29142.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O55:H7 str. USDA 5905]
gi|320666885|gb|EFX33861.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O157:H7 str. LSU-61]
Length = 359
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 129/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDK----NSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMDL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL I + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSL 351
>gi|323966510|gb|EGB61943.1| permease YjgP/YjgQ family protein [Escherichia coli M863]
gi|327251763|gb|EGE63449.1| hypothetical protein ECSTEC7V_3615 [Escherichia coli STEC_7v]
Length = 359
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 131/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGTIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRFALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + ++ IM + G L AL I + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWSSYQIMVNLGLLFALSAPVTALGLPIAFMLVALSL 351
>gi|300866498|ref|ZP_07111188.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
gi|300335455|emb|CBN56348.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
Length = 369
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/356 (15%), Positives = 129/356 (36%), Gaps = 23/356 (6%)
Query: 8 YFFKYYLKTTLY-FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
Y K + L+ L + + V V + E+ ++ E S + ++P I
Sbjct: 4 YLTKELIGPFLFGVGLFSSVGVTVGAVFELVRRVTE-SGLPFSTAIQIFLLKMPYFIVLA 62
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P L+ +++ + ++ SE+V R+ GI++++L+ P V+ S+ + T + I +
Sbjct: 63 FPMSMLLASLMAYSRMSSDSEIVALRSCGINVYRLVVPAVILSLAVTGMTFAMNELIVPA 122
Query: 127 GEKIG---IDLIQQWKDNGDKQKSDIIPWMQ--ISNPQQDIFI----GAKKILPENHIWE 177
+D + + ++K+ P + ++ + A++ + +
Sbjct: 123 ANYQATVTLDRALKREKPLFQEKNIFYPEFRNVDKGNGEESVLTRLFYAEQF--DGKQMK 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYG-----RIPIDKNSTTLNI 230
T + + ++ ++ AI + Y R + L +
Sbjct: 181 GLTILDRSQP-ELNQIISSESAIWNPAQNSWDFFNGTVYIVAPDGSYRNIVRFEHQQLQL 239
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVAMTL 289
P + + + + I ++ S R + + +P + + L
Sbjct: 240 PRTPLDLAAKARDYGEMNIAQAIDYLNLIRSSGDEQKIRKLKVRIQEKYALPFVCIVFGL 299
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ A++ + R+ + + F Y I S G IL PV AA +P+I
Sbjct: 300 VGAALGTKPQRTGR-ATSFGISVIVIFTYYVFSFITSSMGLKAILTPVMAAWLPMI 354
>gi|325527103|gb|EGD04518.1| putative permease [Burkholderia sp. TJI49]
Length = 382
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 63/374 (16%), Positives = 121/374 (32%), Gaps = 28/374 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L + + L I T L+ +
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEFVGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + Q W+ + + Q F+ + P++ I +
Sbjct: 125 ADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTI-SNVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP------------------I 221
D K ++ + + A LK V E + I +
Sbjct: 184 IYEFDSKFQLQNVRIAQKGSYEPPGHWLLKGVTETELTPIKPIAGQPADALNPVYRSQQV 243
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
L + S + + + + N R + + ++ P
Sbjct: 244 TLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHL-RENQQDTQRYDIALWRKLLYP 302
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ M +++ + +R+ + V GI G + T+ G A
Sbjct: 303 FAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAPLTAA 362
Query: 342 IPVILTISLSILIL 355
P ++ ++L + L
Sbjct: 363 TPGLIYLALGLFAL 376
>gi|300703336|ref|YP_003744938.1| permease [Ralstonia solanacearum CFBP2957]
gi|299070999|emb|CBJ42308.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
solanacearum CFBP2957]
Length = 401
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/399 (14%), Positives = 123/399 (30%), Gaps = 49/399 (12%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ +YF + ++ L + L D+ + + Y+ + P
Sbjct: 8 PVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSV--VGRYTTLIAFFHVMLQAPTR 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++IP L+ I VF + SE I R G+ L ++ L + T +
Sbjct: 66 VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRGALLSLFKIALPLALVTYVFGEF 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP--------QQDIFIGAKKILPENH 174
I E+ + + + W++ P + F+ + P+
Sbjct: 126 IGPKSEQFAQKVRLEALGATVSAEFRSGVWVKDRGPARPDGSGGEVTRFVNVGSLQPDQT 185
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNSTTLN---- 229
I D ++ + A A + +L V E + P +
Sbjct: 186 I-RSLRIYEFDADYRLSSIRVAQQARYQGHQSWELDDVTETHFVEFPRKAGAAMPQDNRQ 244
Query: 230 -----------------------------IPIKMDGFQKFSEQFASRSFYEIIKKMSFSN 260
P + E+ A+ ++ I+ + +
Sbjct: 245 AVPGAPDALAPDFRGEQTKLPKQEMRSELTPQILSVLMVTPERMATLDLFQYIRHLRDNK 304
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
+ R E + +V P ++ M +A + +R+ + V GI G
Sbjct: 305 Q----DTQRYEIALWKKVVYPFTVLVMMALALPFAYLHARAGAVGLKVFGGIMLGLSFQL 360
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + G + A++P L ++++++ L E
Sbjct: 361 VNNLFSHVGLLNTWPAIFTAIVPGALYLAVALIALRWVE 399
>gi|332753041|gb|EGJ83425.1| hypothetical protein SF434370_3220 [Shigella flexneri 4343-70]
gi|332998924|gb|EGK18515.1| hypothetical protein SFVA6_3889 [Shigella flexneri VA-6]
gi|333000167|gb|EGK19750.1| hypothetical protein SFK218_4002 [Shigella flexneri K-218]
Length = 359
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 129/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDGVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDK----NSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|160888237|ref|ZP_02069240.1| hypothetical protein BACUNI_00646 [Bacteroides uniformis ATCC 8492]
gi|317480118|ref|ZP_07939228.1| hypothetical protein HMPREF1007_02345 [Bacteroides sp. 4_1_36]
gi|156862183|gb|EDO55614.1| hypothetical protein BACUNI_00646 [Bacteroides uniformis ATCC 8492]
gi|316903665|gb|EFV25509.1| hypothetical protein HMPREF1007_02345 [Bacteroides sp. 4_1_36]
Length = 378
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 55/359 (15%), Positives = 128/359 (35%), Gaps = 12/359 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T ++ + + + V D NE ++ + +P
Sbjct: 20 LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWNAIVFDYYLNFIPY 79
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S ++L P++V + ++ + T + +
Sbjct: 80 FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVVTFCLGS 139
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G I+ ++ + I + ++ + F+
Sbjct: 140 YVIPKGSVTRINFEDKYYKPRKANTARNI----QLEVDSGVIAYIERFEDYSKTGYRFSL 195
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ K +++ A V K+ +Y ++ K S T I F + +
Sbjct: 196 DKFNDK-QLVSHLTARSITYDTTAVHKWKIKDYMIRQMDGMKESITKGDRIDTTLFMEPA 254
Query: 242 E------QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ Q + ++ + ++ + + E +++ I + +TLI S+S
Sbjct: 255 DFLIMKNQQEMLTSPQLSEYINRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSLS 314
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ ++ + + G+ F TI +F +G + PV A IP I+ ++ +
Sbjct: 315 SKKTK-GGMGLHLGIGLALSFSYILFQTIASTFAVNGNMPPVIAVWIPNIMYAFIAFYL 372
>gi|330818020|ref|YP_004361725.1| hypothetical protein bgla_1g31620 [Burkholderia gladioli BSR3]
gi|327370413|gb|AEA61769.1| hypothetical protein bgla_1g31620 [Burkholderia gladioli BSR3]
Length = 382
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 59/374 (15%), Positives = 123/374 (32%), Gaps = 28/374 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G +Y+ + + P +I
Sbjct: 6 KYFARQIYLTFVFVLFAFSGLFFFFDLISELNSVGH-GSYNFGYAVLRVGLQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP TL+ I VF + SE I R G++ + L + + L I T L+ I
Sbjct: 65 IPVATLISAIYVFAQMAANSEFTIFRVSGLATNRALRSLLKIGVPLVIVTYLIGEFIGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + + + W+ + + F+ + P++ I +
Sbjct: 125 TDQLSERVRLEALGSSVSSNFQSGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTI-SNVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRI------------------PI 221
D K ++ + + A L V + Q I +
Sbjct: 184 IYEFDSKFQLQNVRIAKSGRYAPPGHWLLTDVTDTQLSPIVPAPNTPKDALNPVYRSEQV 243
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
+L + S + + + + + N R + + ++ P
Sbjct: 244 SMPQYSLRSDLTPQILSVLLVSPERMSIFNLFRYIQHL-RENQQDTQRYDIALWRKLLYP 302
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ M +++ + +R+ + V GI G T+ G A
Sbjct: 303 FAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPLTAA 362
Query: 342 IPVILTISLSILIL 355
+P ++ ++L + L
Sbjct: 363 LPGLIYLALGLFGL 376
>gi|281180020|dbj|BAI56350.1| conserved hypothetical protein [Escherichia coli SE15]
gi|330909040|gb|EGH37554.1| permease Ygh-P2, YjgP/YjgQ family [Escherichia coli AA86]
Length = 359
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 129/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 GASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|191172563|ref|ZP_03034103.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
gi|190907231|gb|EDV66830.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
gi|324011926|gb|EGB81145.1| hypothetical protein HMPREF9533_04084 [Escherichia coli MS 60-1]
Length = 359
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 129/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 GASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL I + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSL 351
>gi|257058053|ref|YP_003135941.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8802]
gi|256588219|gb|ACU99105.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8802]
Length = 395
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 54/372 (14%), Positives = 127/372 (34%), Gaps = 22/372 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY + ++ + L I N + + + +VP
Sbjct: 24 LMDRYIGGQLITPFIFGVGLVSSLGVAIGYLSDLGNKVVDSNLPLIKALEILLLKVPEFT 83
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P ++ ++ + L+ SEL+ RA G+S+ +L+ P + S+++ T + +
Sbjct: 84 AYALPISVMLTTLLTYGRLSSDSELIALRACGVSLSRLIAPALALSLVVSGITFVFNELV 143
Query: 124 ATSGEKIGIDLIQQWKD---NGDKQKSDIIP-WMQISNPQQDIF------IGAKKILPEN 173
+ ++ ++ + +QK P + +IS P + A++ EN
Sbjct: 144 VPTANYQATSILVKYLNEEHRFWQQKDIFYPDYEEISLPNGETIKRLKHLFYAEEFDGEN 203
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL---NI 230
D NKI+ D+ + Y+ K++ +
Sbjct: 204 MKALTILEWIGDSLNKIV-ISDSATWNANQNTWDFFNGNIYKIAPDASYKDTFGFKHRQL 262
Query: 231 PIKMDGFQ-----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
P+ F+ + + E K + + + + P + V
Sbjct: 263 PLSKAPFEFALQGRNPYEMNIIQAQEYTKLLKMIGDQKNLRT--FQVRIQQKMSFPFICV 320
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
LI + + + ++ + F Y + ++ S G G + P AA +P
Sbjct: 321 VFGLIGSVLGARPQQMSRS-TSFGLSVIIIFTYYVLGFLIGSLGLVGAISPFMAAWLPNF 379
Query: 346 LTISLSILILLQ 357
+ +++ +L +
Sbjct: 380 IGLAVGGWLLYR 391
>gi|237741964|ref|ZP_04572445.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
gi|229429612|gb|EEO39824.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
Length = 363
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 57/365 (15%), Positives = 128/365 (35%), Gaps = 9/365 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + + +P
Sbjct: 1 MIKKMDMYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQ-GKLAGGEIFDYILNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ + +
Sbjct: 60 KMFVETAPLSVLLAGLITVSIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFIN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I T + D K + I+N +++ KI E + E+
Sbjct: 120 NSIYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLYLM-GKINRETGMAENIE 178
Query: 181 SITIDKK-NKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKM 234
I + + +K A A I +K V Y + + L
Sbjct: 179 VIKFETQISKPKEIITAKSAKFDIDENKWIFSNVNIYNVDTKETVTKTEYKSDLYKDDPS 238
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + +E + E+ K + K+ + P + I S
Sbjct: 239 NFIRASAEDPRMLTIKELKKTIKEQ-KNIGEDTRIYLAELAKRYSFPFASFIVAFIGLSA 297
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S ++ R + + + + +G+ Y + ++ +GI+ P A+ IP IL + + I
Sbjct: 298 SSKYVRGGRTTMNLVICVVAGYGYYLVSGAFEAMSLNGIVNPFVASWIPNILYLIIGIYF 357
Query: 355 LLQKE 359
+ + E
Sbjct: 358 MNRAE 362
>gi|157155522|ref|YP_001464443.1| YjgP/YjgQ permease [Escherichia coli E24377A]
gi|193067447|ref|ZP_03048415.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
gi|260869741|ref|YP_003236143.1| hypothetical protein ECO111_3808 [Escherichia coli O111:H- str.
11128]
gi|157077552|gb|ABV17260.1| putative permease, YjgP/YjgQ family [Escherichia coli E24377A]
gi|192959404|gb|EDV89839.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
gi|257766097|dbj|BAI37592.1| conserved predicted membrane protein [Escherichia coli O111:H- str.
11128]
gi|323178688|gb|EFZ64264.1| hypothetical protein ECOK1180_2420 [Escherichia coli 1180]
Length = 359
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 129/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDK----NSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIKDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFTAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|301058948|ref|ZP_07199917.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
gi|300446944|gb|EFK10740.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
Length = 355
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 58/357 (16%), Positives = 126/357 (35%), Gaps = 11/357 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L Y +LK L +L +L +I+ + +G+ Y + +L +P
Sbjct: 2 KLLDIYIGSRFLKCFLLVILILAVLFSLIEFLSQLDDVGK-GMYRVENALLLVMLTLPKC 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++P L+ ++ L EL+ + GIS ++ P +L+ + + ++
Sbjct: 61 LLDLLPISALLGGVISLGLLADHGELLAMQNAGISAPRVCAPVFATLMLVIMTSGIMAET 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I E++ + + W + +Q+ +I KIL E +
Sbjct: 121 IIPDMEQMARKSRTRALYGAGVNVTRHGFWAR----RQNAYIHVHKILDEG-VAAGVDIF 175
Query: 183 TIDKKNKIIHRKDADLAI-IYNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKMDGFQ 238
D + ++ A A + + + L + + + + S TL + D
Sbjct: 176 EFDPRGRLKTFTHALSARILGHQQWSLTGIRQTVFKDRGVAIKGAASWTLEPFLSPDQVA 235
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S ++I + + + + +PL M L + + L
Sbjct: 236 LLELSPYCLSTPDLIGYIKALED-GGQNADPYRLALWRKLGVPLTTGVMVLFSVTFVLGA 294
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+R + + G +LY ++ G L P A++PV+ L++ L
Sbjct: 295 NRKVRAGSRITMASLIGLLLYFADQLIMHTGLLLNLNPPITAMLPVVFISGLAVWRL 351
>gi|167835783|ref|ZP_02462666.1| hypothetical protein Bpse38_04778 [Burkholderia thailandensis
MSMB43]
Length = 383
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 62/375 (16%), Positives = 121/375 (32%), Gaps = 29/375 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQAPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L V + + I T L+ I
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEFIGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + + + W+ + + F+ K+ P++ I D
Sbjct: 125 SDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGKLSPDSTI-SDVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP------------------- 220
D + + + + A L V + Q +
Sbjct: 184 IYEFDSRFNLQNVRIAKSGRYQPPGHWLLTDVTDTQLTSLAGNGATSPADTLSPVYRAQQ 243
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+ +L + S + + + + K N R + + ++
Sbjct: 244 VTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHL-KENQQDTQRYDIALWRKLLY 302
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
P + M +++ + +R+ + V GI G T+ G A
Sbjct: 303 PFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPLTA 362
Query: 341 LIPVILTISLSILIL 355
+P + ++L + L
Sbjct: 363 ALPGCIYLALGLFAL 377
>gi|312879634|ref|ZP_07739434.1| permease YjgP/YjgQ family protein [Aminomonas paucivorans DSM
12260]
gi|310782925|gb|EFQ23323.1| permease YjgP/YjgQ family protein [Aminomonas paucivorans DSM
12260]
Length = 337
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 42/319 (13%), Positives = 116/319 (36%), Gaps = 9/319 (2%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
S+ L +P ++ IP +L+ ++ F L+ E+V +A G++ +++ P
Sbjct: 20 GVSLGVVVRLFLYYLPGVVVLTIPMGSLLAALLGFGRLSANVEIVALKAAGVAFQRIVRP 79
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIF 163
+ S+L+ + ++ + + E+ ++L++ + + I + +
Sbjct: 80 VIWASLLVSLGSMALNETLVPLAERAAVNLLRYEVMQETPPLFKERIFLKEEKDGHLKRV 139
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK 223
I ++ P + D ++ ++ A + ++ ++ +
Sbjct: 140 IYINRMRPRSGKMADILVQEFEED-RLSRIIAAPRGEWVRGEWWIEDGKVFEVDAQGKVR 198
Query: 224 NSTT-----LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
T L + + + S + +++ + + R +
Sbjct: 199 LLFTFRKQGLQLHLNPKEVETQSLDPQQMNLFQMRDSIRRLEEQGA-DATRLRVLLNLRL 257
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+P V + L+ A+ RS+ + + F Y ++ +S G++ L V
Sbjct: 258 AVPWASVVLALVGAAAGSRPQRSSSSVGLGLSVVIV-FFYYVTLSFCQSLGEASYLPAVV 316
Query: 339 AALIPVILTISLSILILLQ 357
AA P ++ + L ++ +
Sbjct: 317 AAWFPNLIFLVLGGFLVRR 335
>gi|171316729|ref|ZP_02905941.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MEX-5]
gi|171098079|gb|EDT42894.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MEX-5]
Length = 382
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 63/374 (16%), Positives = 120/374 (32%), Gaps = 28/374 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L + I L I T L+ +
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGIPLVIITYLIGEFVGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQI------SNPQQDIFIGAKKILPENHIWEDFT 180
+++ + Q W++ + Q F+ + P++ I +
Sbjct: 125 ADQLSERVRLQALGASVSSNFQSGVWVKDTLAAHENGEQVTRFVNVGNLSPDSTI-SNVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP------------------I 221
D K ++ + + A L V E + I +
Sbjct: 184 IYEFDSKFQLQNVRIAQTGRYEPPGHWLLTGVTETELTPIKPISGAPADALNPVYRSQQV 243
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
L + S + + + + N R + + ++ P
Sbjct: 244 TLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHL-RENQQDTQRYDIALWRKLLYP 302
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ M +++ + +R+ + V GI G + T+ G A
Sbjct: 303 FAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAPLTAA 362
Query: 342 IPVILTISLSILIL 355
P ++ ++L + L
Sbjct: 363 TPGLIYLALGLFAL 376
>gi|294785396|ref|ZP_06750684.1| permease, YjgP/YjgQ family [Fusobacterium sp. 3_1_27]
gi|294487110|gb|EFG34472.1| permease, YjgP/YjgQ family [Fusobacterium sp. 3_1_27]
Length = 363
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/365 (15%), Positives = 127/365 (34%), Gaps = 9/365 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + + +P
Sbjct: 1 MIKKMDIYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQ-GKLAGGEIFDYIINLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ + +
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFIN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I T + D K + I+N +++ KI E + E+
Sbjct: 120 NSIYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLYLM-GKINRETGVAENIE 178
Query: 181 SITIDKK-NKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDKNS---TTLNIPIKM 234
+ + + +K A A D K V Y + + L
Sbjct: 179 VVKFETQISKPKEIITAKSAKFDTDEDKWIFSNVNIYNVDTKETVTKTEYKSDLYKDDPS 238
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + +E + E+ K + K+ + P + I S
Sbjct: 239 NFIRASAEDPRMLTIKELKKTIKEQ-KNIGEDTRIYLAELAKRYSFPFASFIVAFIGLSA 297
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S ++ R + + + + +G+ Y + ++ +GI+ P A+ IP IL + + I
Sbjct: 298 SSKYVRGGRTTMNLVICVVAGYGYYLVSGAFEAMSLNGIVNPFVASWIPNILYLIIGIYF 357
Query: 355 LLQKE 359
+ + E
Sbjct: 358 MNRAE 362
>gi|331654590|ref|ZP_08355590.1| putative permease [Escherichia coli M718]
gi|331047972|gb|EGI20049.1| putative permease [Escherichia coli M718]
Length = 386
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 29 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 87
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R++G SI+++ +V IL + +
Sbjct: 88 LVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 147
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 202
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDK----NSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 203 FHYRDDLSLESYIYARSATIEDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMDL 262
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 263 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 318
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL I + +++ +
Sbjct: 319 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSL 378
>gi|331648770|ref|ZP_08349858.1| putative permease [Escherichia coli M605]
gi|331042517|gb|EGI14659.1| putative permease [Escherichia coli M605]
Length = 386
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 129/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 29 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 87
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 88 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 148 GASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 202
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 203 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNL 262
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 263 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 318
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 319 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 378
>gi|254251664|ref|ZP_04944982.1| hypothetical protein BDAG_00856 [Burkholderia dolosa AUO158]
gi|124894273|gb|EAY68153.1| hypothetical protein BDAG_00856 [Burkholderia dolosa AUO158]
Length = 382
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 64/377 (16%), Positives = 124/377 (32%), Gaps = 34/377 (9%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP TL+ I VF + SE I R G++ Q L + + L I T L+ +
Sbjct: 65 IPVATLISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEFVGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + Q W+ + + F+ P++ I +
Sbjct: 125 ADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEHVTRFVNVGSPSPDSTI-SNVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQY------GRIPIDKNSTTLN---- 229
D K ++ + + A L V E + P D S
Sbjct: 184 IYEFDSKFQLRNVRIAQSGRYEPPGHWLLTGVTETELTPIKPVAGQPADALSPVYRSQQV 243
Query: 230 -----------IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
P + E+ + + + I+ + + + R + + +
Sbjct: 244 TLPEYRLRSDLTPQILSVLLVSPERMSIVNLFRYIQHLRENQQ----DTQRYDIALWRKL 299
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+ P + M +++ + +R+ + V GI G + T+ G
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAPL 359
Query: 339 AALIPVILTISLSILIL 355
A P ++ ++L + L
Sbjct: 360 TAATPGLIYLALGLFAL 376
>gi|300931863|ref|ZP_07147160.1| conserved hypothetical protein [Escherichia coli MS 187-1]
gi|331664593|ref|ZP_08365499.1| putative permease [Escherichia coli TA143]
gi|300460286|gb|EFK23779.1| conserved hypothetical protein [Escherichia coli MS 187-1]
gi|331058524|gb|EGI30505.1| putative permease [Escherichia coli TA143]
Length = 359
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|218555553|ref|YP_002388466.1| hypothetical protein ECIAI1_3128 [Escherichia coli IAI1]
gi|218362321|emb|CAQ99943.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli IAI1]
Length = 386
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 29 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 87
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 88 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 202
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 203 FHYRDDLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDL 262
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D F+ R I + + + + + + P++ +AM L+A
Sbjct: 263 DELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 318
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 319 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 378
>gi|170018762|ref|YP_001723716.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
gi|297517383|ref|ZP_06935769.1| hypothetical protein EcolOP_07055 [Escherichia coli OP50]
gi|300916914|ref|ZP_07133617.1| conserved hypothetical protein [Escherichia coli MS 115-1]
gi|300923636|ref|ZP_07139664.1| hypothetical protein HMPREF9548_01829 [Escherichia coli MS 182-1]
gi|300950817|ref|ZP_07164703.1| conserved hypothetical protein [Escherichia coli MS 116-1]
gi|300958360|ref|ZP_07170501.1| hypothetical protein HMPREF9547_04074 [Escherichia coli MS 175-1]
gi|312972760|ref|ZP_07786933.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|169753690|gb|ACA76389.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
gi|242378535|emb|CAQ33321.1| ybl135 [Escherichia coli BL21(DE3)]
gi|284923006|emb|CBG36098.1| putative permease [Escherichia coli 042]
gi|300314944|gb|EFJ64728.1| hypothetical protein HMPREF9547_04074 [Escherichia coli MS 175-1]
gi|300415884|gb|EFJ99194.1| conserved hypothetical protein [Escherichia coli MS 115-1]
gi|300420077|gb|EFK03388.1| hypothetical protein HMPREF9548_01829 [Escherichia coli MS 182-1]
gi|300449912|gb|EFK13532.1| conserved hypothetical protein [Escherichia coli MS 116-1]
gi|310332702|gb|EFP99915.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|323936016|gb|EGB32311.1| permease YjgP/YjgQ family protein [Escherichia coli E1520]
gi|323941919|gb|EGB38098.1| permease YjgP/YjgQ family protein [Escherichia coli E482]
gi|332344938|gb|AEE58272.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 359
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R++G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDK----NSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMDL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL I + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSL 351
>gi|24114287|ref|NP_708797.1| hypothetical protein SF3026 [Shigella flexneri 2a str. 301]
gi|30064334|ref|NP_838505.1| hypothetical protein S3227 [Shigella flexneri 2a str. 2457T]
gi|24053443|gb|AAN44504.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30042591|gb|AAP18315.1| hypothetical protein S3227 [Shigella flexneri 2a str. 2457T]
gi|281602370|gb|ADA75354.1| putative permease, YjgP/YjgQ family [Shigella flexneri 2002017]
gi|313648097|gb|EFS12543.1| hypothetical protein SF2457T_3697 [Shigella flexneri 2a str. 2457T]
gi|332752655|gb|EGJ83040.1| hypothetical protein SFK671_3613 [Shigella flexneri K-671]
gi|332754439|gb|EGJ84805.1| hypothetical protein SF274771_3586 [Shigella flexneri 2747-71]
gi|332765461|gb|EGJ95679.1| hypothetical protein SF293071_3543 [Shigella flexneri 2930-71]
gi|333014735|gb|EGK34080.1| hypothetical protein SFK304_3819 [Shigella flexneri K-304]
Length = 359
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 129/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDGVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDK----NSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYHLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|166364704|ref|YP_001656977.1| permease [Microcystis aeruginosa NIES-843]
gi|166087077|dbj|BAG01785.1| permease [Microcystis aeruginosa NIES-843]
Length = 387
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 54/365 (14%), Positives = 131/365 (35%), Gaps = 21/365 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
++ RY L L+ + L V + +L+++ NQ+ + N ++ + +VP
Sbjct: 14 IALIDRYLISQLLPPFLFSVGLFASLGVAIGNLSDLANQVVD-ANLPLASALEILLLKVP 72
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ ++ + L+ SE V ++ G+++++L P S+++ + T L+
Sbjct: 73 EFVTYSLPVSLLLATLITYGRLSSDSETVALQSCGVTLYRLFIPTFCLSLIVTVVTFLLN 132
Query: 121 NPIATSGEKIGIDLIQQ--------WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE 172
+ + +++ Q WK+ I ++ +++ +
Sbjct: 133 EYVVPNANYRATEILVQKINKEASFWKNKDFYYPDYEIKTLENGTINRNLISLFYAEQFD 192
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIP------IDKN 224
+ T I K+ ++ AD A ++ + Y+ I
Sbjct: 193 GEKMKTVTVIRWLKQ-ELNQIIIADSARWNAVDNVWDFFNGIIYELTPPNASYRQVIPFK 251
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLM 283
+ + + F + S + + I+ + S R + + I P +
Sbjct: 252 AEKIALSRSAFDFARQSRDPYEMNIPQAIEYVQLLKLSGDDKRVRFFQVRIQQKIAFPFV 311
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ I ++ R ++ + F+ Y + ++ S G + L P AA +P
Sbjct: 312 CIVFATIGCALGSLPQRISR-GTSFGLSVAIVFLYYLLNFLVGSLGLTATLSPFLAAWLP 370
Query: 344 VILTI 348
Sbjct: 371 NFFGF 375
>gi|255038424|ref|YP_003089045.1| permease YjgP/YjgQ family protein [Dyadobacter fermentans DSM
18053]
gi|254951180|gb|ACT95880.1| permease YjgP/YjgQ family protein [Dyadobacter fermentans DSM
18053]
Length = 360
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 126/358 (35%), Gaps = 11/358 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY K +L T ++ ++++ +ID E + + +P
Sbjct: 3 FKILDRYLIKNFLITYVFVAFVIVLIICMIDYTEKVDDFLDKKAPLREIIIDYYLNLIPY 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I I P + + + + +E++ + GIS ++L P++ G+++LGI T + +
Sbjct: 63 WINYISPLMVFIATVFFTSRIAARTEIIAMLSSGISFGRMLRPYMAGAVVLGILTFIQVG 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ KI + + N + D++ + FT
Sbjct: 123 WVLPKANKIRNSFEKTYVKNEFYFSGHNVHI----TIAPDVYAYLESYNTTTQTGNKFTM 178
Query: 182 ITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDG 236
TI K K++ + AD + K L+ + + T I +
Sbjct: 179 ETI-KGTKLLQKFYADKIVWQPKKGKWTLQNYQVRTLDSLGERLSRGTEIDTTINLSPKD 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F+ F + + E+ + + Y P ++ +T I VS
Sbjct: 238 FESDYNLFETFTLPELNAYIDLLKSRGADGLEVYLIEKYTRFTQPFAILILTAIGVIVSA 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
SR +A G F+ + K ++G + + A +P I+ ++ +L+
Sbjct: 298 RKSRRG-VGWQIALGFMLAFIYILFFLLSKGVAEAGTINTLFAVWLPNIVFSAIGVLL 354
>gi|293416424|ref|ZP_06659063.1| hypothetical protein ECDG_03180 [Escherichia coli B185]
gi|291431780|gb|EFF04763.1| hypothetical protein ECDG_03180 [Escherichia coli B185]
Length = 359
Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 58/360 (16%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQAMQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ +D + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIKDDKMWILHGVNHKKWLNGKETLDTSDNLAWQSAFTSMDL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL I + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSL 351
>gi|53725612|ref|YP_102445.1| hypothetical protein BMA0670 [Burkholderia mallei ATCC 23344]
gi|67640814|ref|ZP_00439608.1| permease YjgP/YjgQ family protein [Burkholderia mallei GB8 horse 4]
gi|76811145|ref|YP_332584.1| hypothetical protein BURPS1710b_1173 [Burkholderia pseudomallei
1710b]
gi|121600496|ref|YP_993650.1| hypothetical protein BMASAVP1_A2341 [Burkholderia mallei SAVP1]
gi|124384824|ref|YP_001028888.1| hypothetical protein BMA10229_A2944 [Burkholderia mallei NCTC
10229]
gi|126449595|ref|YP_001081199.1| hypothetical protein BMA10247_1655 [Burkholderia mallei NCTC 10247]
gi|126453481|ref|YP_001065300.1| hypothetical protein BURPS1106A_1020 [Burkholderia pseudomallei
1106a]
gi|134281127|ref|ZP_01767836.1| putative membrane protein [Burkholderia pseudomallei 305]
gi|167003638|ref|ZP_02269424.1| putative membrane protein [Burkholderia mallei PRL-20]
gi|167718521|ref|ZP_02401757.1| hypothetical protein BpseD_05832 [Burkholderia pseudomallei DM98]
gi|167737553|ref|ZP_02410327.1| hypothetical protein Bpse14_05780 [Burkholderia pseudomallei 14]
gi|167823141|ref|ZP_02454612.1| hypothetical protein Bpseu9_05658 [Burkholderia pseudomallei 9]
gi|167844705|ref|ZP_02470213.1| hypothetical protein BpseB_05393 [Burkholderia pseudomallei B7210]
gi|167893240|ref|ZP_02480642.1| hypothetical protein Bpse7_05710 [Burkholderia pseudomallei 7894]
gi|167901697|ref|ZP_02488902.1| hypothetical protein BpseN_05420 [Burkholderia pseudomallei NCTC
13177]
gi|167917973|ref|ZP_02505064.1| hypothetical protein BpseBC_05418 [Burkholderia pseudomallei
BCC215]
gi|217419559|ref|ZP_03451065.1| putative membrane protein [Burkholderia pseudomallei 576]
gi|226194459|ref|ZP_03790057.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
gi|237811280|ref|YP_002895731.1| permease YjgP/YjgQ family protein [Burkholderia pseudomallei
MSHR346]
gi|242314384|ref|ZP_04813400.1| putative membrane protein [Burkholderia pseudomallei 1106b]
gi|254177658|ref|ZP_04884313.1| putative membrane protein [Burkholderia mallei ATCC 10399]
gi|254181441|ref|ZP_04888038.1| putative membrane protein [Burkholderia pseudomallei 1655]
gi|254190840|ref|ZP_04897347.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
gi|254196385|ref|ZP_04902809.1| putative membrane protein [Burkholderia pseudomallei S13]
gi|254199347|ref|ZP_04905713.1| putative membrane protein [Burkholderia mallei FMH]
gi|254205663|ref|ZP_04912015.1| putative membrane protein [Burkholderia mallei JHU]
gi|254259902|ref|ZP_04950956.1| putative membrane protein [Burkholderia pseudomallei 1710a]
gi|254357821|ref|ZP_04974094.1| putative membrane protein [Burkholderia mallei 2002721280]
gi|52429035|gb|AAU49628.1| membrane protein, putative [Burkholderia mallei ATCC 23344]
gi|76580598|gb|ABA50073.1| membrane protein, putative [Burkholderia pseudomallei 1710b]
gi|121229306|gb|ABM51824.1| putative membrane protein [Burkholderia mallei SAVP1]
gi|124292844|gb|ABN02113.1| putative membrane protein [Burkholderia mallei NCTC 10229]
gi|126227123|gb|ABN90663.1| putative membrane protein [Burkholderia pseudomallei 1106a]
gi|126242465|gb|ABO05558.1| putative membrane protein [Burkholderia mallei NCTC 10247]
gi|134247433|gb|EBA47518.1| putative membrane protein [Burkholderia pseudomallei 305]
gi|147748943|gb|EDK56017.1| putative membrane protein [Burkholderia mallei FMH]
gi|147753106|gb|EDK60171.1| putative membrane protein [Burkholderia mallei JHU]
gi|148026948|gb|EDK84969.1| putative membrane protein [Burkholderia mallei 2002721280]
gi|157938515|gb|EDO94185.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
gi|160698697|gb|EDP88667.1| putative membrane protein [Burkholderia mallei ATCC 10399]
gi|169653128|gb|EDS85821.1| putative membrane protein [Burkholderia pseudomallei S13]
gi|184211979|gb|EDU09022.1| putative membrane protein [Burkholderia pseudomallei 1655]
gi|217396863|gb|EEC36879.1| putative membrane protein [Burkholderia pseudomallei 576]
gi|225933544|gb|EEH29533.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
gi|237504053|gb|ACQ96371.1| permease YjgP/YjgQ family protein [Burkholderia pseudomallei
MSHR346]
gi|238521609|gb|EEP85059.1| permease YjgP/YjgQ family protein [Burkholderia mallei GB8 horse 4]
gi|242137623|gb|EES24025.1| putative membrane protein [Burkholderia pseudomallei 1106b]
gi|243060864|gb|EES43050.1| putative membrane protein [Burkholderia mallei PRL-20]
gi|254218591|gb|EET07975.1| putative membrane protein [Burkholderia pseudomallei 1710a]
Length = 383
Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 62/375 (16%), Positives = 120/375 (32%), Gaps = 29/375 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQAPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L V + + I T L+ I
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEFIGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + + + W+ + + F+ + P++ I D
Sbjct: 125 SDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTI-SDVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIP------------------- 220
D K + + + A L V + Q +
Sbjct: 184 IYEFDSKFNLQNVRIAKRGHYQPPGHWLLTDVTDTQLTSLAGNGTASPVDTLNPVYRAQQ 243
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+ +L + S + + + + K N R + + ++
Sbjct: 244 VTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHL-KENQQDTQRYDIALWRKLLY 302
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
P + M +++ + +R+ + V GI G T+ G A
Sbjct: 303 PFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPLTA 362
Query: 341 LIPVILTISLSILIL 355
+P + ++L + L
Sbjct: 363 ALPGCIYLALGLFAL 377
>gi|218245029|ref|YP_002370400.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8801]
gi|218165507|gb|ACK64244.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8801]
Length = 395
Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 53/372 (14%), Positives = 124/372 (33%), Gaps = 22/372 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY + ++ + L I N + + + +VP
Sbjct: 24 LMDRYIGGQLITPFIFGVGLVSSLGVAIGYLSDLGNKVVDSNLPLIKALEILLLKVPEFT 83
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P ++ ++ + L+ SEL+ RA G+S+ +L+ P + S+++ T + +
Sbjct: 84 AYALPISVMLTTLLTYGRLSSDSELIALRACGVSLSRLIAPALALSLVVSGITFVFNELV 143
Query: 124 ATSGEKIGIDLIQQWKD---NGDKQKSDIIP-WMQISNPQQDIF------IGAKKILPEN 173
+ ++ ++ + +QK P + +IS P + A++ EN
Sbjct: 144 VPTANYQATSILVKYLNEEHRFWQQKDIFYPDYEEISLPNGETIKRLKHLFYAEEFDGEN 203
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST------- 226
D NKI+ D+ + Y+ K++
Sbjct: 204 MKALTILEWIGDSLNKIV-ISDSATWNANQNTWDFFNGNIYKIAPDASYKDTFGFKHRQF 262
Query: 227 -TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
P + + + E K + + + + P + V
Sbjct: 263 PLSKAPFEFALQGRNPYEMNIIQAQEYTKLLKMIGDQKNLRT--FQVRIQQKMSFPFICV 320
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
LI + + + ++ + F Y + ++ S G G + P AA +P
Sbjct: 321 VFGLIGSVLGARPQQMSRS-TSFGLSVIIIFTYYVLGFLIGSLGLVGAISPFMAAWLPNF 379
Query: 346 LTISLSILILLQ 357
+ +++ +L +
Sbjct: 380 IGLAVGGWLLYR 391
>gi|146328919|ref|YP_001210037.1| hypothetical protein DNO_1153 [Dichelobacter nodosus VCS1703A]
gi|146232389|gb|ABQ13367.1| conserved hypothetical membrane protein [Dichelobacter nodosus
VCS1703A]
Length = 349
Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 55/360 (15%), Positives = 120/360 (33%), Gaps = 19/360 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + R+ + + L+ + + F++ E + +G NY + VP
Sbjct: 1 MITLYDRHIARIITAHIIIVLIFLLGIDFLVQSAEESDNIGR-GNYHFWLMLSILLLNVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I + +P LV I LN+ EL + R GIS +L ++ + LG +++
Sbjct: 60 ARIVEFMPAAVLVGTITALGQLNKQQELTVIRTSGISRLRLSLSGLMIAFFLGCALIVLA 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ L + Q +D W++ D + + E
Sbjct: 120 EYGVAPAQNRAQWLHHHALNTTAPQ-TDHGIWLR----DGDNIVYIGAFQADGS-LEKIR 173
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-----IPIKMD 235
+ +++ A +L G + T + +P +
Sbjct: 174 FYR--PHEHDLEIQESQRATFMQTHWQLDDNRALCIGSQSSMPITPTTHWQNRILPATIA 231
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + R Y I + +++ ++ + + + I +P+ + M ++A
Sbjct: 232 QLMQLKNAYTLRELYTITGFL----RAHQLNDQQMSLKLWQRIFLPITTITMVILALPCV 287
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + GI G Y + I+ G +AL+P+++ + +L
Sbjct: 288 FNTRRDGN-GARLVIGILLGASYYVVQGIVTKLGLLLHWSTALSALLPILIFALPPLFLL 346
>gi|306816678|ref|ZP_07450810.1| hypothetical protein ECNC101_08669 [Escherichia coli NC101]
gi|331659261|ref|ZP_08360203.1| putative permease [Escherichia coli TA206]
gi|305850243|gb|EFM50702.1| hypothetical protein ECNC101_08669 [Escherichia coli NC101]
gi|315297644|gb|EFU56921.1| conserved hypothetical protein [Escherichia coli MS 16-3]
gi|331053843|gb|EGI25872.1| putative permease [Escherichia coli TA206]
Length = 359
Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 129/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDNDIIGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|207721412|ref|YP_002251853.1| permease protein [Ralstonia solanacearum MolK2]
gi|206586571|emb|CAQ17158.1| permease protein [Ralstonia solanacearum MolK2]
Length = 401
Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 55/399 (13%), Positives = 123/399 (30%), Gaps = 49/399 (12%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ +YF + ++ L + L D+ + + Y+ + P
Sbjct: 8 PVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSV--VGRYTTLIAFFHVMLQAPTR 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++IP L+ I VF + SE I R G+ L ++ L + T +
Sbjct: 66 VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRGALLSLFKIALPLALVTYVFGEF 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP--------QQDIFIGAKKILPENH 174
I E+ + + + W++ P + F+ + P+
Sbjct: 126 IGPKSEQFAQKVRLEALGATVSAEFRSGVWVKDRGPARPDGSGGEVTRFVNVGSLQPDQT 185
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNSTTLN---- 229
I D ++ + A A + +L V + + P +
Sbjct: 186 I-RSLRIYEFDADYRLSSIRVAQQARYQGHQSWELDDVTQTHFIEFPRKAGAAAPQDNRQ 244
Query: 230 -----------------------------IPIKMDGFQKFSEQFASRSFYEIIKKMSFSN 260
P + E+ A+ ++ I+ + +
Sbjct: 245 AVPGAPDALAPDFRGEQTKLPKQEMRSELTPQILSVLMVTPERMATLDLFQYIRHLRDNK 304
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
+ R E + +V P ++ M +A + +R+ + V GI G
Sbjct: 305 Q----DTQRYEIALWKKVVYPFTVLVMMALALPFAYLHARAGAVGLKVFGGIMLGLSFQL 360
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + G + A++P L ++++++ L E
Sbjct: 361 VNNLFSHVGLLNTWPAIFTAIVPGALYLAVALIALRWVE 399
>gi|26249547|ref|NP_755587.1| hypothetical protein c3716 [Escherichia coli CFT073]
gi|254162933|ref|YP_003046041.1| hypothetical protein ECB_02855 [Escherichia coli B str. REL606]
gi|26109955|gb|AAN82160.1|AE016766_248 Hypothetical protein c3716 [Escherichia coli CFT073]
gi|253974834|gb|ACT40505.1| conserved hypothetical protein [Escherichia coli B str. REL606]
gi|253978989|gb|ACT44659.1| conserved hypothetical protein [Escherichia coli BL21(DE3)]
gi|309703415|emb|CBJ02754.1| putative permease [Escherichia coli ETEC H10407]
Length = 386
Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 29 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 87
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R++G SI+++ +V IL + +
Sbjct: 88 LVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 147
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 202
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDK----NSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 203 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMDL 262
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 263 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 318
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL I + +++ +
Sbjct: 319 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSL 378
>gi|218701754|ref|YP_002409383.1| hypothetical protein ECIAI39_3474 [Escherichia coli IAI39]
gi|227887686|ref|ZP_04005491.1| inner membrane protein [Escherichia coli 83972]
gi|301019929|ref|ZP_07184064.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|218371740|emb|CAR19591.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli IAI39]
gi|227835082|gb|EEJ45548.1| inner membrane protein [Escherichia coli 83972]
gi|299882027|gb|EFI90238.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|307555074|gb|ADN47849.1| putative permease [Escherichia coli ABU 83972]
Length = 359
Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|307139669|ref|ZP_07499025.1| hypothetical protein EcolH7_16278 [Escherichia coli H736]
Length = 359
Score = 153 bits (388), Expect = 4e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PF+ L+ IV L++ SEL R++G SI+++ +V IL + +
Sbjct: 61 LVELSPFVALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDK----NSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMDL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL I + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSL 351
>gi|301017326|ref|ZP_07182090.1| conserved hypothetical protein [Escherichia coli MS 69-1]
gi|300400299|gb|EFJ83837.1| conserved hypothetical protein [Escherichia coli MS 69-1]
Length = 359
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVMMALSL 351
>gi|193062018|ref|ZP_03043114.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
gi|300824069|ref|ZP_07104190.1| conserved hypothetical protein [Escherichia coli MS 119-7]
gi|331669796|ref|ZP_08370641.1| putative permease [Escherichia coli TA271]
gi|192932238|gb|EDV84836.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
gi|300523459|gb|EFK44528.1| conserved hypothetical protein [Escherichia coli MS 119-7]
gi|331062709|gb|EGI34623.1| putative permease [Escherichia coli TA271]
Length = 359
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPID----KNSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNSFSVRQLNHYINYLQETGQ----PSSEYRLALWEKLGHPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AAL + + ++++
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALIL 351
>gi|117625285|ref|YP_854457.1| putative permease [Escherichia coli APEC O1]
gi|115514409|gb|ABJ02484.1| putative permease [Escherichia coli APEC O1]
gi|294491111|gb|ADE89867.1| putative permease, YjgP/YjgQ family [Escherichia coli IHE3034]
gi|307625417|gb|ADN69721.1| hypothetical protein UM146_01460 [Escherichia coli UM146]
gi|315288788|gb|EFU48186.1| conserved hypothetical protein [Escherichia coli MS 110-3]
gi|323951498|gb|EGB47373.1| YjgP/YjgQ permease [Escherichia coli H252]
gi|323957870|gb|EGB53584.1| YjgP/YjgQ permease [Escherichia coli H263]
Length = 359
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 128/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDNDIIGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDK----NSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNYKKWLNGKETLETLDNLAWQSAFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQDTGQ----PSSEYHLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSVPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|331643680|ref|ZP_08344811.1| putative permease [Escherichia coli H736]
gi|331037151|gb|EGI09375.1| putative permease [Escherichia coli H736]
Length = 386
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 29 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 87
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PF+ L+ IV L++ SEL R++G SI+++ +V IL + +
Sbjct: 88 LVELSPFVALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 147
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 202
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDK----NSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 203 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMDL 262
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 263 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 318
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL I + +++ +
Sbjct: 319 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVALSL 378
>gi|293449327|ref|ZP_06663748.1| hypothetical protein ECCG_02358 [Escherichia coli B088]
gi|291322417|gb|EFE61846.1| hypothetical protein ECCG_02358 [Escherichia coli B088]
Length = 359
Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDV-NPGGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPID----KNSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNSFSVRQLNHYINYLQETGQ----PSSEYRLALWEKLGHPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AAL + + ++++
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALIL 351
>gi|91212393|ref|YP_542379.1| hypothetical protein UTI89_C3401 [Escherichia coli UTI89]
gi|218560054|ref|YP_002392967.1| hypothetical protein ECS88_3361 [Escherichia coli S88]
gi|237706274|ref|ZP_04536755.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|91073967|gb|ABE08848.1| hypothetical protein UTI89_C3401 [Escherichia coli UTI89]
gi|218366823|emb|CAR04593.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli S88]
gi|226899314|gb|EEH85573.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
Length = 386
Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 128/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 29 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 87
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 88 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + W + + + F+ K + +
Sbjct: 148 VASPLQQQALQIKSTATALGEDNDIIGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 202
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDK----NSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 203 FHYRDDLSLESYIYARSATIEDDKTWILHGVNYKKWLNGKETLETLDNLAWQSAFTSMNL 262
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 263 EELSMPGNTFSVRQLNHYIHYLQDTGQ----PSSEYHLALWEKLGQPILTLAMILLAVPF 318
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 319 TFSVPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 378
>gi|331679053|ref|ZP_08379725.1| putative permease [Escherichia coli H591]
gi|331073118|gb|EGI44441.1| putative permease [Escherichia coli H591]
Length = 386
Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 29 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 87
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 88 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 202
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPID----KNSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 203 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNL 262
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 263 EELSMPGNSFSVRQLNHYINYLQETGQ----PSSEYRLALWEKLGHPILTLAMILLAVPF 318
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AAL + + ++++
Sbjct: 319 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALIL 378
>gi|323188591|gb|EFZ73876.1| hypothetical protein ECRN5871_3010 [Escherichia coli RN587/1]
Length = 359
Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLEQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|159030859|emb|CAO88538.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 387
Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats.
Identities = 57/365 (15%), Positives = 132/365 (36%), Gaps = 21/365 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
++ RY L L+ + L V + +L+++ NQ+ + N ++ + +VP
Sbjct: 14 IALIDRYLISQLLPPFLFSVGLFASLGVAISNLSDLANQVVD-ANLPLASALEILLLKVP 72
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ ++ + L+ SE V ++ G+++++L P S+++ + T L+
Sbjct: 73 EFVTYSLPVSLLLATLITYGRLSSDSETVALQSCGVTLYRLFIPTFCLSLIVTVVTFLLN 132
Query: 121 NPIATSGEKIGIDLIQQ---WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL-----PE 172
+ + +++ Q + N K K P +I + + L +
Sbjct: 133 EYVVPNANYRATEILVQKINKEANFWKNKDFYYPDYEIKTLENGTINRNLRSLFYAEQFD 192
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIP------IDKN 224
+ T I K+ ++ AD A ++ + Y+ I
Sbjct: 193 GEKMKTVTVIRWLKE-ELNQIIIADSARWNAVDNVWDFFNGIIYELTPPNASYSQVIPFK 251
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLM 283
+ + + F + S + + I+ + S R + + I P +
Sbjct: 252 TEKIALSRSAFDFARQSRDPYEMNIPQAIEYVQLLKLSGDEKRVRFFQVRIQQKIAFPFV 311
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ I ++ R ++ + F+ Y + ++ S G + L P AA +P
Sbjct: 312 CIVFATIGCALGSLPQRISR-GTSFGLSVAIVFLYYLLNFLVGSLGLTATLSPFLAAWLP 370
Query: 344 VILTI 348
Sbjct: 371 NFFGF 375
>gi|310778172|ref|YP_003966505.1| permease YjgP/YjgQ family protein [Ilyobacter polytropus DSM 2926]
gi|309747495|gb|ADO82157.1| permease YjgP/YjgQ family protein [Ilyobacter polytropus DSM 2926]
Length = 358
Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats.
Identities = 54/368 (14%), Positives = 134/368 (36%), Gaps = 20/368 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I RY ++K+ + L G + + + L ++ + E + + +P
Sbjct: 1 MKKI-DRYITMNFIKSIVLSLFGFINIFILSQLFKVIRYVTE-GRFGGVDAIYYIISLLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
II +++P L+ ++ + + E++ + GIS +++ ++ + ++ +
Sbjct: 59 DIIIKVMPLAVLLGGLMTINKMASSLEIIALKTSGISFKRIITFPILIAFIISCGVYYMN 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ I K ++ + ++ + +S +++ + + A+ I +
Sbjct: 119 DKIYPESIKKSREIKRGGYEDMELPESRKKAFLRGKD---NYVYYAESINRITSTAVNIE 175
Query: 181 SITIDKKN-KIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPIDKNSTTLNI------P 231
+ +D + K+ A+ I N K + V K+S TL +
Sbjct: 176 ILELDSEFEKLTKIITAEKGIYHRENKLWKFENVTVNNL----EKKSSYTLPVMQDVRYD 231
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + F S + E+ + ++ + ++ +
Sbjct: 232 DEPERFLAPSVNPKLLTIKEMRSTLGAIKQTGGNSREIL-MELGDRTSFSFASFVVSFLG 290
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+ + R + VA + G+ Y + M++ G++ P A IP IL + L
Sbjct: 291 LSLGSRYVR-GASAVSVAMSVGLGYSYYIVQASMEAISMGGVIHPFIGAWIPNILFLILG 349
Query: 352 ILILLQKE 359
I + + E
Sbjct: 350 IYAMYKAE 357
>gi|194436708|ref|ZP_03068808.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
gi|256024435|ref|ZP_05438300.1| hypothetical protein E4_13754 [Escherichia sp. 4_1_40B]
gi|194424190|gb|EDX40177.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
Length = 359
Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLMALSL 351
>gi|218696688|ref|YP_002404355.1| hypothetical protein EC55989_3395 [Escherichia coli 55989]
gi|218353420|emb|CAU99485.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli 55989]
Length = 386
Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 130/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 29 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDV-NPGGYRWTQAVLVVLMTLPRT 87
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 88 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 202
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPID----KNSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 203 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNL 262
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 263 EELSMPGNSFSVRQLNHYINYLQETGQ----PSSEYRLALWEKLGHPILTLAMILLAVPF 318
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AAL + + ++++
Sbjct: 319 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALIL 378
>gi|256845304|ref|ZP_05550762.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
gi|256718863|gb|EEU32418.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
Length = 363
Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats.
Identities = 57/365 (15%), Positives = 128/365 (35%), Gaps = 9/365 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + + +P
Sbjct: 1 MIKKMDMYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQ-GKLAGEEIFDYILNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ + +
Sbjct: 60 KMFVETAPLSVLLAGLITVSIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFIN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I T + D K + I+N +++ KI E + E+
Sbjct: 120 NSIYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLYLM-GKINRETGMAENIE 178
Query: 181 SITIDKK-NKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKM 234
I + + +K A A I +K V Y + + L
Sbjct: 179 VIKFETEISKPKEIITAKSAKFDIDENKWIFSNVNIYNVDTKETVTKTEYKSDLYKDDPS 238
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + +E + E+ K + K+ + P + I S
Sbjct: 239 NFIRASAEDPRMLTIKELKKTIKEQ-KNIGEDTRIYLAELAKRYSFPFASFIVAFIGLSA 297
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S ++ R + + + + +G+ Y + ++ +GI+ P A+ IP IL + + I
Sbjct: 298 SSKYVRGGRTTMNLVICVVAGYGYYLVSGAFEAMSLNGIVNPFVASWIPNILYLIIGIYF 357
Query: 355 LLQKE 359
+ + E
Sbjct: 358 MNRAE 362
>gi|218691270|ref|YP_002399482.1| hypothetical protein ECED1_3629 [Escherichia coli ED1a]
gi|218428834|emb|CAR09635.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli ED1a]
Length = 386
Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 129/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 29 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 87
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 88 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + W + + + F+ K + +
Sbjct: 148 VASPLQQQALQIKSTATALGEDNDIIGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 202
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 203 FHYRDDLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLETSDNLAWQSTFTSMNL 262
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 263 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 318
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 319 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 378
>gi|284929475|ref|YP_003421997.1| putative permease [cyanobacterium UCYN-A]
gi|284809919|gb|ADB95616.1| predicted permease [cyanobacterium UCYN-A]
Length = 382
Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats.
Identities = 60/369 (16%), Positives = 146/369 (39%), Gaps = 38/369 (10%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY F L L+ + L + + L ++ ++ E ++ + ++P
Sbjct: 10 VVDRYLFLELLSPFLFGMGIFTSLGLSIGTLFDLVRRVTE-SGLVLTVAFQILLLKIPGF 68
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ ++ + L+ SE++ R++G+ I++L+ P V+ ++ +V +
Sbjct: 69 LSLAFPMAILLAALMAYSRLSSDSEIIALRSLGVGIYRLVIPVVIFGFIVTGCAFVVNDW 128
Query: 123 IATSGEKIGIDLIQQ---WKDNGDKQKSDIIPW---MQISNPQQDIFI----GAKKILPE 172
IA + ++++ K K+ + + P ++ N Q+ + A++ E
Sbjct: 129 IAPAATHKAAIILEEAVSQKRPDFKRHNIVYPEYKTVKGKNGQESTMLTRLFHAEEYNGE 188
Query: 173 NHIWEDFTSITIDKKNKIIHRKDA------DLAIIYNDKVKL-------KKVVEYQYGRI 219
T + N+I+ + A + +N + L + +V +Q+ ++
Sbjct: 189 EMKGLTILDRTQEGVNQIVTSESATWNISSNTWDFFNGTIYLIAPDGSYRNIVRFQHQQL 248
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
+ + P+ + ++ + E +K + FS + +
Sbjct: 249 ALPRA------PLDLADRRQNFTEMTISETREYLKAVQFSGNEKRIRKVK--VRLQEKYA 300
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG--FMLYTIITIMKSFGKSGILLPV 337
+P + + L+ AS+ ++ ++G+ G F Y + + S G GIL P
Sbjct: 301 MPFVCLIFGLVGASIGVKPQ---NTNRATSFGVCVGLIFGYYILAFMSTSLGIWGILTPF 357
Query: 338 AAALIPVIL 346
A +P I+
Sbjct: 358 LGAWLPNIV 366
>gi|330874293|gb|EGH08442.1| hypothetical protein Pgy4_05807 [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 213
Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats.
Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 7/212 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L L L + LV + + + + Y+++ P +
Sbjct: 4 LDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISD--TYTLADALSYVMLTAPRRVY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ L +SEL I RA G+SI +++ + +LL + VLV +A
Sbjct: 62 DTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + +GD Q + W + + FI + P + T
Sbjct: 122 PYAENQAQAARSLAQGSGDAQSARHGLWHRQ----GEEFIHINTVQPNGLML-GVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY 216
D + ++ A A D +LK V +
Sbjct: 177 DDQRHMLTSSFAKEANFKTDYWELKDVSTTHF 208
>gi|288926740|ref|ZP_06420651.1| membrane protein [Prevotella buccae D17]
gi|288336470|gb|EFC74845.1| membrane protein [Prevotella buccae D17]
Length = 367
Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats.
Identities = 57/362 (15%), Positives = 126/362 (34%), Gaps = 18/362 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K ++ T + + + + V D NE ++ + + A +P
Sbjct: 8 KILDWYIIKKFIGTYFFSIALIISIAIVFDFNENLSKFTQYHAPWRAIVFDYYANFIPYY 67
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A G+S +L+ P+++ +L+ T +
Sbjct: 68 SNLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMISCVLIAALTYYLGAY 127
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
G I D +++N +D + + + + F
Sbjct: 128 EIPHGTVIRQDFEALYRNNTKNTAADNV----QLQVDKGVIAYIQHYDNNTKKGYGFKLN 183
Query: 183 TIDKKNKI--IHRKDADLAIIYNDK--VKLKKVVEYQYGRIPI------DKNSTTLNIPI 232
+ K + + + I + K +++ + + + +K++ L P
Sbjct: 184 KFEDKKLVSDLTAMEVQYDTISDTKFHWRMRNWKQRKLQGLKEHITSGAEKDTVILMEPT 243
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + E F S E I K SN+ + + +++ I +T+I
Sbjct: 244 DLVYSKGQQETFTSPELREYISKQIDRGSSNV---VQYQVEYHKRIATSFASFILTVIGL 300
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S+S R + + G+ F + T+ +F + P+ AA P ++ ++
Sbjct: 301 SLSSRK-RKGGMGLYLGLGLALSFGYIMLQTVSATFAINAGAPPMLAAWTPNMVFAIVAY 359
Query: 353 LI 354
+
Sbjct: 360 FL 361
>gi|319902150|ref|YP_004161878.1| permease YjgP/YjgQ family protein [Bacteroides helcogenes P 36-108]
gi|319417181|gb|ADV44292.1| permease YjgP/YjgQ family protein [Bacteroides helcogenes P 36-108]
Length = 378
Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats.
Identities = 56/362 (15%), Positives = 122/362 (33%), Gaps = 18/362 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T ++ + + + V D NE ++ + +P
Sbjct: 20 LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWNAIVFDYYLNFIPY 79
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S ++L P++V + ++ + T + +
Sbjct: 80 FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFRRMLRPYMVSAAIIAVITFCLGS 139
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I G I+ ++ + I + ++ + F+
Sbjct: 140 YIIPKGSVTRINFEDKYYKPRKANTARNI----QLEVDSGVIAYIERFEDYSKTGYRFSL 195
Query: 182 ITIDKKNKIIHRKDADLAIIYN---DKVKLKKVVEYQYGRIPID------KNSTTLNIPI 232
+ +++ A K +K + + ++T P
Sbjct: 196 DKF-RDKQLVSHLTARSITYDTTSVHKWIVKDYMIRAMDGMKESITKGDRIDTTLFMEPA 254
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ E S E I + +NI E +++ I + +TLI
Sbjct: 255 DFLIMKNQQEMLTSPQLSEYIDRQRQRGFANI---KEFEIEYHKRIAMSFASFILTLIGV 311
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S+S + ++ + + G+ F TI +F +G + PV A IP +L +++
Sbjct: 312 SLSSKKTK-GGMGLHLGIGLALSFSYILFQTIASTFAVNGNVPPVIAIWIPNVLYAFVAL 370
Query: 353 LI 354
+
Sbjct: 371 YL 372
>gi|297171530|gb|ADI22528.1| predicted permeases [uncultured Oceanospirillales bacterium
HF0500_09M11]
gi|297182284|gb|ADI18453.1| predicted permeases [uncultured Oceanospirillales bacterium
HF4000_13G19]
Length = 353
Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats.
Identities = 49/328 (14%), Positives = 114/328 (34%), Gaps = 11/328 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RYF++ L +L + + L + + Y + + T VP
Sbjct: 3 LLKRYFWRSVLLPSLAIVAIIVGLDCLFSFIYELEFL--RGGYQVMQALQFVLTTVPRRF 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P L+ ++ + + EL + RA G+S Q+ + I L + ++ V +
Sbjct: 61 HEYLPMAILLGTLIGLGLMANSGELSVIRAAGVSTLQVSWMVLRPVIFLMLLSIPVGEYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E++ + G+ +S+ W + + D FI + P + T
Sbjct: 121 APYTEQVAQSNRSLQEGGGEALRSEYGFWHR----EGDEFIHINTVQPNG-VLYGLTRYR 175
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQKF 240
+ +++ + + A+ D L+ + ++G + + + +
Sbjct: 176 FNDDHQLEESQFVERALYQGDHWTLQNIQGTRFGDDRTETYTEGGGRWDTSLTPQLLSIV 235
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + ++ + + + F+ +++P + M LIA S R
Sbjct: 236 VLEPRRLAMAKLWNYTRYMKEQGLQSAD-YMLAFWQKLLMPAATIGMVLIAISFIFGPLR 294
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSF 328
+ +A GI +G
Sbjct: 295 EVTMGLRMAAGIVAGLTFNYGQQFFGHL 322
>gi|170681358|ref|YP_001745244.1| YjgP/YjgQ permease [Escherichia coli SMS-3-5]
gi|170519076|gb|ACB17254.1| putative permease, YjgP/YjgQ family [Escherichia coli SMS-3-5]
Length = 359
Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 129/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y + ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTLAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + + +
Sbjct: 176 FHYRDDLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSAPRSPGVGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|254410176|ref|ZP_05023956.1| putative permease, YjgP/YjgQ family [Microcoleus chthonoplastes PCC
7420]
gi|196183212|gb|EDX78196.1| putative permease, YjgP/YjgQ family [Microcoleus chthonoplastes PCC
7420]
Length = 380
Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats.
Identities = 45/363 (12%), Positives = 125/363 (34%), Gaps = 12/363 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + L+ + + I L ++ + + + + +P
Sbjct: 18 VMDRYIITELIPPFLFGMGMFSSVGVTIGSLFDLMRRAVD-EGLPATLVLKVLLLSLPQF 76
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ ++ + L+ SEL+ R+ G+SI++L+ P ++ S+++ T
Sbjct: 77 MAYAFPTSVLLATLLTYSRLSSDSELIALRSCGVSIYRLVLPALLLSLVVTGITFGFNEY 136
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + +++ + + + + + + + T +
Sbjct: 137 VVPASNYQATITLEKALGEEKPTFKERNIFYREYAEDKTLKRLFYAQNFDGERMKGLTIL 196
Query: 183 TIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIP-----IDKNSTTLNIPIKMD 235
++ + AD AI Y + L +P
Sbjct: 197 DWSQQ-SLNQIVTADSAIWNVAQSTWDFYNGTIYLVSPDASYRNIVRFEHQQLQLPRIPL 255
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVAMTLIAASV 294
+ + + + +++ +S + R + + +P V L+ S+
Sbjct: 256 DLARKDRDYDEMNITQARERLELERQSGDEEDIRKLKIRISQKFALPFACVVFGLVGGSL 315
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ R+++ + F Y ++ I + G S L P+ +A +P ++ ++ +
Sbjct: 316 GNQPQRTSK-ATGFGISVLVIFAYYMLMAIGDALGLSNYLPPLISAWLPNLMGFAVGGFL 374
Query: 355 LLQ 357
L++
Sbjct: 375 LIR 377
>gi|198283962|ref|YP_002220283.1| permease YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218667335|ref|YP_002426598.1| YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198248483|gb|ACH84076.1| permease YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218519548|gb|ACK80134.1| YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 357
Score = 152 bits (385), Expect = 8e-35, Method: Composition-based stats.
Identities = 58/358 (16%), Positives = 123/358 (34%), Gaps = 18/358 (5%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
R F+ L + L + LV++ + + G +S++R AA ++P +
Sbjct: 5 DRLLFRGMLLYSSLVLAMLLTLVYIAQIIAKSSGPGH-GVWSMTRLLSYAALQLPDVAYD 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+IP L+ +V L+ SE++ R G S+W+L P ++ +L + +
Sbjct: 64 VIPLALLLGALVWMSILSGHSEVIALRMSGWSVWRLEQPLLLVGLLGAGLMFALGEWVIP 123
Query: 126 SGEKIGIDLIQQWK--DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ G W++ I + I ++
Sbjct: 124 VTAPAAEAMWANAGEPGAGFHNMGPRGLWLRYGTQ----IIQVGTVGDGGKILQNLHIAD 179
Query: 184 IDKKNKIIHR-KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI------PIKMDG 236
+ + I+ A A+ L V ++ I + T P +
Sbjct: 180 VRQGMVGINAMTTAAEAVFQGGHWYLHDVRLFRITPDQIQMTAVTETPWPVALHPATLSS 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F + + ++ + + +S + R F+ + P + + M L+A
Sbjct: 240 FAHPTRTMTLPTLWQSYQAL----QSGALNMNRFALAFWRRVSYPWVGLVMILLAVPFVT 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R V G+ G + + + SG + P+AA L+P+ L +++ +
Sbjct: 296 RNPRGGGLAARVMAGLVLGLGFHFLTEMSGYISVSGGIPPLAATLLPIALFAAVAGAL 353
>gi|158337167|ref|YP_001518342.1| YjgP/YjgQ family membrane protein [Acaryochloris marina MBIC11017]
gi|158307408|gb|ABW29025.1| membrane protein, YjgP/YjgQ family, putative [Acaryochloris marina
MBIC11017]
Length = 383
Score = 152 bits (385), Expect = 8e-35, Method: Composition-based stats.
Identities = 59/366 (16%), Positives = 134/366 (36%), Gaps = 17/366 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRVP 60
L R+ + + ++ + F I L + ++ E S + ++P
Sbjct: 17 ISRLDRFILRAFWMPWVFAFGAFTTISFSIGALFDTLRRLTE-GTLSSVDALQVLVLQLP 75
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ ++ + L R +EL+ +A G S+++++ P + S+++ + T+ +
Sbjct: 76 RFMVLALPMSMLLAPLLTYSQLARKNELIALKACGTSVYRVIRPALCFSLIVAVSTLTLN 135
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I L Q + Q + Q+ + + + T
Sbjct: 136 EWIVPPATAAVHRLQAQQTVSQITAIPRQNIVHQTYHHQRLTQLFHARAF-DGEALHQLT 194
Query: 181 SITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF- 237
+ + + H A AI + + L + Y + +P K F
Sbjct: 195 ILQF-QDRHLHHIWLAKQAIWDSTHQQWILSQGTRYTIDPVS---GLYQQVVPFKRHPFH 250
Query: 238 QKFSEQFA-----SRSFYEIIKKMSFSNKSNIFHNY-RAETQFYFLIVIPLMLVAMTLIA 291
Q ++ A S +E + +S R + +++ L+ P + V TL+
Sbjct: 251 QVSPQELAEVAHQPISLHETQALIQQIKQSGNLPTLQRLQVRWHALMAFPWIGVGFTLMG 310
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+S+ + + S Q + F YT I ++ G +GI A +P+++ +++
Sbjct: 311 SSLGCQST-SKQGSLGFGLSSLLIFGYYTFSFICQTLGDAGIWSASIAGWLPIVVLLTIG 369
Query: 352 ILILLQ 357
+L
Sbjct: 370 SALLHH 375
>gi|186476978|ref|YP_001858448.1| permease YjgP/YjgQ family protein [Burkholderia phymatum STM815]
gi|184193437|gb|ACC71402.1| permease YjgP/YjgQ family protein [Burkholderia phymatum STM815]
Length = 382
Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats.
Identities = 63/377 (16%), Positives = 123/377 (32%), Gaps = 28/377 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +YF + T ++ L L F DL N +G NY + A + P
Sbjct: 3 IYEKYFARQVYLTFVFILFAFSGLFFFFDLINELNSVGH-GNYKFQYAVLRVALQTPSRF 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IIP L+ I VF + SE I R G++ Q L + I L T L+ +
Sbjct: 62 YEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVFLTYLIGEVV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWE 177
+++ + + + + W+ + Q F+ ++ P+ I
Sbjct: 122 GPYTDQLSERVRLEALGSSVSSNFESGVWVKDTLTARADGEQVTRFVNVGQLQPDATI-S 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKN------------ 224
+ D K ++ + + A L V + Q + D +
Sbjct: 181 NVRIYEFDSKFRLSNVRIAKSGKYQPPGHWLLTDVTDTQLIDVAQDASKPADALNPVYRA 240
Query: 225 ------STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+L + S + + + + + N R E + +
Sbjct: 241 KQAALPEYSLRSELTPQILSVLLVAPERMSMFNLFRYIQHLTE-NHQDTQRYEIALWRKL 299
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+ P + M +++ + +R+ + V GI G T+ G
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGNLNTWPAPL 359
Query: 339 AALIPVILTISLSILIL 355
A P ++ + L ++ L
Sbjct: 360 TAATPALIYLVLGLVGL 376
>gi|317503389|ref|ZP_07961433.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
gi|315665484|gb|EFV05107.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
Length = 385
Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats.
Identities = 59/362 (16%), Positives = 125/362 (34%), Gaps = 18/362 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K ++ T +Y + + + VID+NE + E + +P
Sbjct: 25 IKRLDWYIIKKFIGTYIYSIALIISISIVIDINENLAKFSEYHAPLKAIVFDYYMNFIPY 84
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ A G+S +L+ P+++ IL+ + + +
Sbjct: 85 FANLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMISCILISVVSFYLSG 144
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ I + +K+ +D + N + + F+
Sbjct: 145 YVIPHSNVIRQNFESLYKNKKKTTAADNVML----NVGKGTIAYIQHYDNNTKRGYGFSL 200
Query: 182 ITIDKKNKIIH--RKDADLAIIYNDK--VKLKKVVEYQYG------RIPIDKNSTTLNIP 231
K + H + I + K + ++ +++T L P
Sbjct: 201 DKFQDKKLVSHMTAMEIQYDTISDSKYHWTAQNYKIRKFNGYREQIENGAKRDTTILMEP 260
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + E F + + I K SN+ + + +++ I +T+I
Sbjct: 261 NDLVYSKGQQETFTNPELSDYISKQIDRGSSNV---VQYQVEYHKRIAASFASFILTIIG 317
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S + R + + G+ F + T+ +F + L P+ AA IP I+ ++
Sbjct: 318 LSLSAKK-RKGGMGMYLGIGLALSFGYIMLQTVSSTFAINANLPPIIAAWIPNIIFAIVA 376
Query: 352 IL 353
Sbjct: 377 YF 378
>gi|325983221|ref|YP_004295623.1| permease YjgP/YjgQ family protein [Nitrosomonas sp. AL212]
gi|325532740|gb|ADZ27461.1| permease YjgP/YjgQ family protein [Nitrosomonas sp. AL212]
Length = 352
Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats.
Identities = 66/361 (18%), Positives = 127/361 (35%), Gaps = 18/361 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
++RY L L + + L DL + + +G Y I+ + +P
Sbjct: 2 IYRYISGQVLIGFLIAIAVILPLFSFFDLLDQLDDVGR-GTYHITDAFLYTTMLLPRRFI 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
QI PF+ L+ + L SEL+ R G+S W++ + ILL + ++ IA
Sbjct: 61 QIAPFVALLGTVTALGKLAVHSELIAMRVAGLSPWRISLAPLSVGILLLLGVAILEQFIA 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ I + + ++ W + + + +I+ N + +
Sbjct: 121 PQLQQKAITYRAIALEQSAELGRNLGIWTR----NEKNILRIGQIISNNKAAA-IEILQL 175
Query: 185 DKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDKNSTT------LNIPIKMDGF 237
D++ + A A I N+ +L V+ + I T P +
Sbjct: 176 DEEGFLAAHVLAQTAEIVDNETWELSNVIVRTFANNQITVAHHTTLHWSSFVSPEDIATL 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
K E + + ++ + +S + I LM +AM L++
Sbjct: 236 TKPPESLSPLELFRHVEFL----RSTGQEADSYALALWRKIGSALMTIAMLLLSIPFVFG 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS +V G +Y + I+ + G L P AL P I ++ + L +
Sbjct: 292 SIRSGLSNKLVFAS-LIGIAVYLLDQIIANAGLILQLNPALIALAPGFTIIMVANVWLNR 350
Query: 358 K 358
Sbjct: 351 T 351
>gi|294782105|ref|ZP_06747431.1| permease, YjgP/YjgQ family [Fusobacterium sp. 1_1_41FAA]
gi|294480746|gb|EFG28521.1| permease, YjgP/YjgQ family [Fusobacterium sp. 1_1_41FAA]
Length = 363
Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats.
Identities = 60/366 (16%), Positives = 126/366 (34%), Gaps = 11/366 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y KY++K L ++G M + + +I + + +P
Sbjct: 1 MIKKLDIYISKYFIKYFLMNIIGFMGVFLLAQTFKIIKYINQ-GKLEGGEIFDYIVNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ +F V
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFIISLFVFFVN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I T + D + I+N I++ I E E
Sbjct: 120 NSIYTKSLAKINFYRKGEIDASLRLPKTKENAFFINNTDGYIYLM-GNINRETGEAEKIE 178
Query: 181 SITIDKK-NKIIHRKDADLAIIY--NDKVKLKKV----VEYQYGRIPIDKNSTTLNIPIK 233
+ D + +K + A N K L V VE + + +S
Sbjct: 179 IVIYDTEISKPVEIITAQSGKYDKDNKKWLLSGVNIYNVETKKTITKVAYDSDRFGEDPN 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + +E + E+ K + K+ + P + I S
Sbjct: 239 -NFIRAAAEDPRMLTIKELKKTIKEQ-KNIGEDTRIYLAELAKRYSFPFASFIVAFIGLS 296
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
VS ++ R + + + + +G+ Y + ++ +GIL P ++ IP IL + +
Sbjct: 297 VSSKYVRGGRTTLNLVICVVAGYGYYLVSGAFEAMSLNGILNPFISSWIPNILYFIIGMY 356
Query: 354 ILLQKE 359
+ + E
Sbjct: 357 FMNRAE 362
>gi|269468373|gb|EEZ80038.1| permease [uncultured SUP05 cluster bacterium]
Length = 360
Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 66/365 (18%), Positives = 136/365 (37%), Gaps = 20/365 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K LK +L ++ + + E +G +Y++ +P I
Sbjct: 2 KILDRYIAKTLLKYSLSVMVVLVGIFAFFKFLEEVGDIGR-ASYTLFDALAYVGLLIPSI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + I L+ I+ L SEL+I R GIS+ ++ + S++ + ++
Sbjct: 61 VYALSSLIILLGCILGLGYLAGNSELIIMRGAGISVVEITKTTLKVSLVFIVIMIIFGEF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I+ Q S W++ + FI K + I+E T I
Sbjct: 121 ISPLFSDYAKKYRAQALGESVISSSQQGFWLR----DGNNFIQVDK-NIDGRIFEKITLI 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY--GRIPIDKNSTTLNIPIK------- 233
++ + + +D A+ + L+K +Q + + TL +
Sbjct: 176 NLNTPSTLDSVVYSDKAVFDGKNMVLQKSNYHQINSDQEFAAIDQKTLQQYLTEVAFDQE 235
Query: 234 -MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ +K ++F++ + ++ +S ++ S E + Y I+ PL L+AM ++A
Sbjct: 236 LIKSLKKEPKEFSTWQLFRRVQFLSNNDLSADI----YEVELYQRIMKPLTLIAMIILAL 291
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
R + + G+ + L + +A +P I+ L+I
Sbjct: 292 PFVFGSLRDSSLGRKIFTGVVISLFFELSSRLGGMISLRFDLNHLLSASLPTIVVFVLAI 351
Query: 353 LILLQ 357
+L +
Sbjct: 352 FMLRR 356
>gi|186681603|ref|YP_001864799.1| permease YjgP/YjgQ family protein [Nostoc punctiforme PCC 73102]
gi|186464055|gb|ACC79856.1| permease YjgP/YjgQ family protein [Nostoc punctiforme PCC 73102]
Length = 391
Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 58/360 (16%), Positives = 120/360 (33%), Gaps = 20/360 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGELPNYSISRGAVLAATRVP 60
I+ RY + + + L ID + ++ ++ E I + + P
Sbjct: 18 FTIMDRYLTSELIAPFFFGVGAFSSLGVTIDAVFDLVRKIVE-SGLPIDIAIQVFLLKFP 76
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I P TL+ ++ + L+ SEL+ R G+S+++++ V+ S+++ T +
Sbjct: 77 NFIVLAFPMSTLLATLMTYSRLSSESELIALRGCGVSVYRIVLTAVMLSLVVTGMTFVFN 136
Query: 121 NPIATSGEKIGIDLIQQWKDN---GDKQKSDIIPWMQI----SNPQQDIFIGAKKILP-E 172
IA + + + + KQ++ P Q + I +
Sbjct: 137 EQIAPAANYQAGVTLDKALKSDKPAFKQQNIFYPEYQDVIQPDGSKNRILTRLFYADQFD 196
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEY-----QYGRIPIDKNS 225
T I KN + ++ A + Y + R +
Sbjct: 197 GKRMTGLTIIDRSTKN-LNQIVVSESAQWNPSQNIWDFYNGTIYFVAADRSYRNIVRFEH 255
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLML 284
L +P + S + + E + ++ R E + I +P +
Sbjct: 256 QQLQLPRTPLSLAEKSRDYGEMNISEALDQLQVEYLGGDRQKIRKLEVRIQQKISLPFVC 315
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
V L+ A++ R+ + + F Y I I + ++G L P A +P
Sbjct: 316 VVFGLVGAAMGSIPQRTGR-GTSFGISVVVIFSYYLIFFISGAIAQAGALSPFMGAWLPN 374
>gi|332885188|gb|EGK05439.1| hypothetical protein HMPREF9456_02640 [Dysgonomonas mossii DSM
22836]
Length = 365
Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 58/366 (15%), Positives = 133/366 (36%), Gaps = 21/366 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ IL +Y K +L T ++ ++ + + V D+NE ++ + VP
Sbjct: 3 ILSILDKYIIKKFLGTYIFSIILIISISVVFDINERLDKFLSNNAPLKAIVFDYYMNFVP 62
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ I L SE++ + G+S +L+ P+++ + ++ + + ++
Sbjct: 63 YYTNLFSALFVFIAVIFFTSKLADNSEIIAMLSNGMSFKRLMKPYMISAGIIAVGSFILS 122
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ I + I ++ + + I + + + ++ + + + +
Sbjct: 123 SFIIPPANETRIKFQNKYIKDKSVDYASRI----QMQVDKGVILYIERFDNKTRLGYNLS 178
Query: 181 SITID----KKNKIIHRKDADLAIIYNDKVKLKK--VVEYQYGRIPIDKNS---TTLN-I 230
+ K + R + D A L + E+ + I + TTLN I
Sbjct: 179 LDKFEGKELKSRLVASRIEYDTAY----HWVLNNYSIREFHGMKEKITTGTRIDTTLNVI 234
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS--NIFHNYRAETQFYFLIVIPLMLVAMT 288
P EQ ++ Y I++ + + E +F+ +T
Sbjct: 235 PSDFLVSVNDFEQMSTPKLYSYIQRQKEKGLANVGGVSITQFEIEFHKRFASVFSAFILT 294
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+I AS+S + + + G+ T+ SF SG + P+ A IP I+ +
Sbjct: 295 IIGASLSARKMK-GGMGLNIGIGLGLSVTYIMFQTVSSSFAVSGTMPPMLAVWIPNIVFM 353
Query: 349 SLSILI 354
++ +
Sbjct: 354 FIAAYL 359
>gi|226227979|ref|YP_002762085.1| hypothetical protein GAU_2573 [Gemmatimonas aurantiaca T-27]
gi|226091170|dbj|BAH39615.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 362
Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 129/358 (36%), Gaps = 16/358 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + + +LG +LVFVIDL + + E A+ +P +
Sbjct: 9 LDRYIATEFTRIFGVTILGFPVLVFVIDLVDNLRKYTER-KLPAKAVALSYFYWIPDTLF 67
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P L + R SE+ ++A GIS ++ + P +V + L + IA
Sbjct: 68 MVLPAAVLFATVFSIGTFTRYSEITAAKASGISFYRFIAPILVMATLALGLDLAFGE-IA 126
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
I +DL++ +++ ++ + I+ + + ++
Sbjct: 127 PPANAIRLDLLE----GTSSSRANDRYNFAFASDRGRIY-RIYTLNVRDKAVDNIEIEAR 181
Query: 185 DKKNKIIHRKDADLAIIYNDK--VKLKKVVEY----QYGRIPIDKNSTTLN-IPIKMDGF 237
K A A + + +L V + + I +S
Sbjct: 182 GSDKKPGMVVAARRAKWNDARRDWRLDSGVVHIIPDRTRDIAFSFDSLIDRDFHETPAEL 241
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + F ++ + ++ +S + + I IP+ + + L A ++
Sbjct: 242 RTTERDPSEMRFADLTRFITVLERSGA-DVNTLKVERMLKIAIPVTCLIIALFGAPLATS 300
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R +A + + + +I + K+ G GI+ P AA IP + +I++L
Sbjct: 301 SQR-GGAAYGIAVSLATTVLFLLLIQLTKAIGGKGIVEPELAAWIPNAVVGLFAIVLL 357
>gi|324005416|gb|EGB74635.1| hypothetical protein HMPREF9532_04926 [Escherichia coli MS 57-2]
Length = 359
Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 127/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A+ ++ + + G D + W + + + F+ K + +
Sbjct: 121 GASPLQQQALQIKSTATALGEDNDIIGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDK----NSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNYKKWLNGKETLETLDNLAWQSAFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQDTGQ----PSSEYHLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 292 TFSVPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 351
>gi|281424311|ref|ZP_06255224.1| putative membrane protein [Prevotella oris F0302]
gi|281401580|gb|EFB32411.1| putative membrane protein [Prevotella oris F0302]
Length = 432
Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 60/362 (16%), Positives = 128/362 (35%), Gaps = 18/362 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K ++ T +Y + + + V+D+NE + E + +P
Sbjct: 72 IKRLDWYIIKKFIGTYIYSIALIISISIVVDINENLAKFSEYHAPLKAIVFDYYMNFIPY 131
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ A G+S +L+ P+++ IL+ + +
Sbjct: 132 FANLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMITCILISAVSFYLSG 191
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ I D +K+N +D + +Q+ + + ++ F+
Sbjct: 192 YVIPHSNVIRQDFESLYKNNKKNTAADNVM-LQVGSG---VIAYIQQYDNNTKRGYGFSL 247
Query: 182 ITIDKKNKIIH--RKDADLAIIYNDK--VKLKKVVEYQYG------RIPIDKNSTTLNIP 231
K + H + I + K ++ K++T + P
Sbjct: 248 DKFQDKKLVSHMTATEIQYDTISDSKYHWTALNYKIRKFNGYREQIENGEKKDTTIMMEP 307
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + E F + + I K SN+ + + +++ I +T+I
Sbjct: 308 TDLVYSKGQQETFTNPELSDYISKQIDRGSSNV---VQYQVEYHKRIAASFASFILTIIG 364
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S + R + + G+ F + T+ +F + L PV AA IP ++ ++
Sbjct: 365 LSLSAKK-RKGGMGLYLGIGLALSFGYIMLQTVSSTFAINANLPPVIAAWIPNLIFAVVA 423
Query: 352 IL 353
Sbjct: 424 YF 425
>gi|191169423|ref|ZP_03031162.1| putative permease, YjgP/YjgQ family [Escherichia coli B7A]
gi|309794090|ref|ZP_07688515.1| conserved hypothetical protein [Escherichia coli MS 145-7]
gi|190900537|gb|EDV60347.1| putative permease, YjgP/YjgQ family [Escherichia coli B7A]
gi|308122497|gb|EFO59759.1| conserved hypothetical protein [Escherichia coli MS 145-7]
Length = 359
Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 131/360 (36%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R++G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPID----KNSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIKDDKTWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNSFSVRQLNHYINYLQETGQ----PSSEYRLALWEKLGHPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AAL + + ++++
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALIL 351
>gi|209519257|ref|ZP_03268059.1| permease YjgP/YjgQ family protein [Burkholderia sp. H160]
gi|209500337|gb|EEA00391.1| permease YjgP/YjgQ family protein [Burkholderia sp. H160]
Length = 382
Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 63/377 (16%), Positives = 121/377 (32%), Gaps = 28/377 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I RYF + T ++ L L F DL N +G NY + A + P
Sbjct: 3 IYERYFARQIYLTFVFILFAFSGLFFFFDLINELNSVGH-GNYKFQYAVLRVALQTPSRF 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IIP L+ I VF + SE I R G++ + L + I L I T L+ +
Sbjct: 62 YEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNRALRSLLKIGIPLVIVTYLIGEVV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWE 177
+++ + + + W+ + Q F+ ++ P+ I
Sbjct: 122 GPYTDQLSERVRLEALGSSVSTNFQSGVWVKDTLTERADGEQVTRFVNVGELRPDATI-S 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQY------------------GR 218
+ D K ++ + + A L V + Q
Sbjct: 181 NVRIYEFDSKFRLSNVRIAQSGRYQPPGHWLLTGVTDTQLLDVAPAPGTPADALNPVYRA 240
Query: 219 IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+ +L + S + + + + + N R E + +
Sbjct: 241 TQVTLPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTE-NHQDTQRYEIALWRKL 299
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+ P + M +++ + +R+ + V GI G T+ G
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPL 359
Query: 339 AALIPVILTISLSILIL 355
A P ++ + L ++ L
Sbjct: 360 TAATPGLVYLVLGLVGL 376
>gi|301643655|ref|ZP_07243696.1| conserved hypothetical protein [Escherichia coli MS 146-1]
gi|301078039|gb|EFK92845.1| conserved hypothetical protein [Escherichia coli MS 146-1]
Length = 349
Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats.
Identities = 57/358 (15%), Positives = 129/358 (36%), Gaps = 18/358 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R++G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDK----NSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMDL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ RS +A G+ G + + IM + G L AL I + +++
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVAL 349
>gi|171463872|ref|YP_001797985.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171193410|gb|ACB44371.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 386
Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats.
Identities = 69/377 (18%), Positives = 123/377 (32%), Gaps = 27/377 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P I RY K + L + L D+ + Y++ + A + P
Sbjct: 6 PFIYERYLAKQIYAAFGFILFALVALFLFFDILSELGLVQ--GTYTLPLALLHALLKAPS 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I +IIP L+ +I VF L SE I R G+ + + L SI L T+++
Sbjct: 64 RISEIIPIAGLIGSIYVFAMLASQSEFTILRIAGLDVKRGLIALTKISIPLIALTLIMSE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD---------IFIGAKKILPE 172
I E + + + + W++ +D ++ K+ +
Sbjct: 124 WIGPYTEAKSDQIRMKAMGSAYSSQFRTGVWVKDRLRDEDGSGPVRPGVRYVNVGKVDKD 183
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRI-------PIDKN 224
N I + D ++ + A L V E ++ P+
Sbjct: 184 NEI-RNIRMYEFDDTYHLLSIRSAVSGQFDETGVWVLNDVTETRFKETKQSDPLNPVFSA 242
Query: 225 ST------TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
T TL + S + + +S + N +R F+ +
Sbjct: 243 QTFTRPIVTLESEVTPQILSVLLISPEKMSIMSLGRFISHL-RENKQDAHRHSIAFWKKV 301
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
V P + M +A + R+ I V GI G ++ + G G +
Sbjct: 302 VYPFTIFVMLTLALPFAYLKVRAGSVGIKVFGGIMLGMSFQLFNSLFSNVGLLGSWPALI 361
Query: 339 AALIPVILTISLSILIL 355
AL P +L L++ L
Sbjct: 362 TALTPPLLYFLLALAGL 378
>gi|217967689|ref|YP_002353195.1| permease YjgP/YjgQ family protein [Dictyoglomus turgidum DSM 6724]
gi|217336788|gb|ACK42581.1| permease YjgP/YjgQ family protein [Dictyoglomus turgidum DSM 6724]
Length = 356
Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats.
Identities = 60/362 (16%), Positives = 132/362 (36%), Gaps = 20/362 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RYF + ++ LL ++ V L I + + + L T++P
Sbjct: 2 KIISRYFLQNFIPVFFVGLLLFTTILLVSPLFIIMDLVVARS-IPLKTALELFITKIPPY 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P + + V + E++ +A G SI L ++ S+ + V
Sbjct: 61 LTYTFPMAIFLAVVYVIGQFSEHGEIMAMKASGASIKYFLPAILMFSLSAQLIMFYVNEF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + L+ + +N + + + + + F +K+ P+N +ED I
Sbjct: 121 VAPKAYEREKILMNKAYNNVIMPSRENVFF-----NENNSFYFFRKVDPKNKKFEDILLI 175
Query: 183 TIDKKNKIIHRKDADLAIIYN-DKVKLKKVVEYQ--------YGRIPIDKNSTTLNIPIK 233
+ +K + A+ A+ Y + + T P +
Sbjct: 176 ELLEKGNVRLIIHAEKALWDEFKGWTFMNGEVYSLNKEGEMIFQGKFKEYKVTLNRAPYQ 235
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ K E+ + + I+ + + + +T+F+ I +P ++A
Sbjct: 236 LVPSSKPVEEMSIFEIVDQIRLLEGTG----LNLNNLKTEFHIRIALPFTCPIFAILALG 291
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ L + + + S F+ Y I +I +S K+GI+ A + I+ + + I
Sbjct: 292 LGLNMGK-GGRSLSFGLSVISIFVYYIIFSIGRSLAKAGIVPYFLGAWLGNIVFLIIGIY 350
Query: 354 IL 355
+L
Sbjct: 351 LL 352
>gi|288928388|ref|ZP_06422235.1| membrane protein [Prevotella sp. oral taxon 317 str. F0108]
gi|288331222|gb|EFC69806.1| membrane protein [Prevotella sp. oral taxon 317 str. F0108]
Length = 390
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 57/362 (15%), Positives = 127/362 (35%), Gaps = 18/362 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + ++ T ++ +L + + V D+NE + + + A VP
Sbjct: 30 LKILDWYIIRKFIGTYVFSILLIISIAIVFDVNENLAKFTQFHAPLKAIVFDYYANFVPY 89
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L TSE++ A G+S +L+ P++V +L+ + +
Sbjct: 90 FANLFSPLFVFIAVIFFTSKLAGTSEIISMLAAGVSFNRLMRPYMVSCLLISCLSFYLSG 149
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G I + +K++ ++ + + + + + F+
Sbjct: 150 YVIPHGTVIRQNFESMYKNSKKNTSAENV----QLQVDRGVIAYIQHYDDKTKRGYGFSL 205
Query: 182 ITIDKKNKIIH--RKDADLAIIYNDK--VKLKKVVEYQYGRIPI------DKNSTTLNIP 231
+ K + H + I + K ++ + + +++ + P
Sbjct: 206 DKFENKKLVSHMTASEIQYDTISDSKYHWQVSNWRIREMKALREKITYGDKRDTLIMMEP 265
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + E F + I K SN+ + E +++ I +T I
Sbjct: 266 ADLVFSKGQQETFTNPELSSYISKQIGRGSSNV---VQYEVEYHKRIAASFASFILTTIG 322
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S R + + G+ F + T+ +F + P+ AA IP +L ++
Sbjct: 323 LSLSSRK-RKGGMGLYLGIGLALSFGYILLQTVSATFAVNANTPPMLAAWIPNLLFAVVA 381
Query: 352 IL 353
Sbjct: 382 YF 383
>gi|303237034|ref|ZP_07323604.1| permease, YjgP/YjgQ family [Prevotella disiens FB035-09AN]
gi|302482421|gb|EFL45446.1| permease, YjgP/YjgQ family [Prevotella disiens FB035-09AN]
Length = 408
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 59/361 (16%), Positives = 129/361 (35%), Gaps = 18/361 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G+L Y K ++ T ++ ++ + + V D NE ++ + + A +P
Sbjct: 49 GLLDWYIIKKFIGTYIFSIVLIISIAIVFDFNENLSKFTQYHAPWRAIIFDNYANFIPYY 108
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A GIS +L+ P+++ IL+ T + +
Sbjct: 109 SNLFSPLFVFIAVIFFTSKLAGDSEIISMLAAGISFNRLMRPYMISCILIAGVTYYLNSS 168
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G I + ++++ + I ++ + F+
Sbjct: 169 VIPHGTVIRQNFNALYRNDKKNTTGENI----QLKVAKNTVAYIQHYDNTYKRGYGFSLD 224
Query: 183 TIDKKNKI--IHRKDADLAIIYNDK--VKLKKVVEYQYGRIPI------DKNSTTLNIPI 232
+ K + + + I + K K+ + + + ++ L P
Sbjct: 225 RFEGKKLVDHLTATEIQYDTIADSKFHWKVTNWKIRKLKGLKEHITTGAEMDTVILMEPT 284
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ F E+F S + I K + N+ + E +F+ I + +T+I
Sbjct: 285 DLIYFDGQQEEFTSSQLLDYISKQTSRGSKNVI---QYEVEFHKRIAMSFSSFILTIIGL 341
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S+S R + + G+ + I +F + P+ AA IP I+ +++
Sbjct: 342 SLSSRK-RKGGMGMYLGIGLALSVSYILLQAISSTFAINTNASPMLAAWIPNIIFAAIAY 400
Query: 353 L 353
Sbjct: 401 F 401
>gi|34540317|ref|NP_904796.1| hypothetical protein PG0501 [Porphyromonas gingivalis W83]
gi|34396629|gb|AAQ65695.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
Length = 360
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 59/357 (16%), Positives = 132/357 (36%), Gaps = 10/357 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L +Y K +L T ++ ++ + + V D+NE + + S VP
Sbjct: 4 LNRLDKYLIKQFLGTFVFSIILIISVSVVFDINEKIDDFMKPEVSLRSIIFDYYFNFVPY 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S +L+ P+++ + ++ I T L+ +
Sbjct: 64 YANLFSPLFVFISVIFFTSKLAEKSEIIAMLSAGVSFKRLMVPYMLSATVIAILTFLLNS 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G ID ++ N Q ++ + ++ +F F+
Sbjct: 124 FVIPPGNATRIDFQNKYIKNKKVQYAESV----QLEVKKGVFAFFGSYSDAMRTGYQFSL 179
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNSTTLN---IPIKMDGF 237
K +++ R AD + ++ +G+ S + I ++ F
Sbjct: 180 EEF-KGKQLVSRLTADRIQYDSLYNWRIFNYRIRHFGKYKETVESGSEMDTVIAVRPADF 238
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + ++ +S + + + E + + +T+I AS+S
Sbjct: 239 LVAEDDVETMTTTDLHTYISHQKQRGVGNVKLFEIELHKRYAAIFSAFILTIIGASLSSR 298
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ I +A G+ F +T+ +F SG L P AA +P + +++ +
Sbjct: 299 KVK-GGMGINIAIGLGLSFAYILFMTVAGTFAISGSLPPFMAAWLPNFVFTVIAVSL 354
>gi|312795336|ref|YP_004028258.1| hypothetical protein RBRH_03152 [Burkholderia rhizoxinica HKI 454]
gi|312167111|emb|CBW74114.1| Hypothetical membrane spanning protein [Burkholderia rhizoxinica
HKI 454]
Length = 382
Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 58/377 (15%), Positives = 126/377 (33%), Gaps = 34/377 (9%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY K T + L L F DL N +G NY S + + P +I
Sbjct: 6 RYLAKQVYLTFAFILFAFSGLFFFFDLISELNAVGH-GNYKFSYAVLRVMLQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + +SE I R G+S + L + + + + T ++ I
Sbjct: 65 IPVAALISAIYVFAQMAASSEFTIFRVSGLSTHRALGSLLKIGVPIVVLTFVIGEIIGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQIS------NPQQDIFIGAKKILPENHIWEDFT 180
+++ + + + W++ + Q F+ ++ P+ I +
Sbjct: 125 TDQLSERVRLEALGSSVSSNFQSGVWVKDTVPGNGATAQVTRFVNVGELKPDATI-SNVR 183
Query: 181 SITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDKNST------------- 226
D + ++ + A + LK V E Q + +
Sbjct: 184 IYEFDSQFRLADVRTAQSGRYMRPGQWLLKGVTETQLHDVAPAAATAKDVLNPVYKSAQV 243
Query: 227 --------TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+ P + ++ + + + ++ + +++ R + +
Sbjct: 244 SMPEYPMRSELTPQILSVLLVAPDRMSMTNLFSYVQHLRENHQ----DAQRYVIALWRKV 299
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+ P ++ M +++ + +R+ + V GI G T+ G
Sbjct: 300 LYPFAVLVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPL 359
Query: 339 AALIPVILTISLSILIL 355
A P ++ ++L + L
Sbjct: 360 TAATPGLIYLALGLFAL 376
>gi|188995335|ref|YP_001929587.1| hypothetical protein PGN_1471 [Porphyromonas gingivalis ATCC 33277]
gi|188595015|dbj|BAG33990.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
33277]
Length = 363
Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 59/357 (16%), Positives = 132/357 (36%), Gaps = 10/357 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L +Y K +L T ++ ++ + + V D+NE + + S VP
Sbjct: 7 LNRLDKYLIKQFLGTFVFSIILIISVSVVFDINEKIDDFMKPEVSLRSIIFDYYFNFVPY 66
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S +L+ P+++ + ++ I T L+ +
Sbjct: 67 YANLFSPLFVFISVIFFTSKLAEKSEIIAMLSAGVSFKRLMVPYMLSATVIAILTFLLNS 126
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G ID ++ N Q ++ + ++ +F F+
Sbjct: 127 FVIPPGNATRIDFQNKYIKNKKVQYAESV----QLEVKKGVFAFFGSYSDAMRTGYQFSL 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNSTTLN---IPIKMDGF 237
K +++ R AD + ++ +G+ S + I ++ F
Sbjct: 183 EEF-KGKQLVSRLTADRIQYDSLYNWRIFNYRIRHFGKYKETVESGSEMDTVIAVRPADF 241
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + ++ +S + + + E + + +T+I AS+S
Sbjct: 242 LVAEDDVETMTTTDLHTYISHQKQRGVGNVKLFEIELHKRYAAIFSAFILTIIGASLSSR 301
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ I +A G+ F +T+ +F SG L P AA +P + +++ +
Sbjct: 302 KVK-GGMGINIAIGLGLSFAYILFMTVAGTFAISGSLPPFMAAWLPNFVFTVIAVFL 357
>gi|295675784|ref|YP_003604308.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1002]
gi|295435627|gb|ADG14797.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1002]
Length = 382
Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 62/377 (16%), Positives = 122/377 (32%), Gaps = 28/377 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I RYF + T ++ L L F DL N +G NY + A + P
Sbjct: 3 IYERYFARQIYLTFVFILFAFSGLFFFFDLINELNSVGH-GNYKFQYAVLRVALQTPSRF 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IIP L+ I VF + SE I R G++ + L + + L I T L+ +
Sbjct: 62 YEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNRALRSLLKIGVPLVIVTYLIGEVV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWE 177
+++ + + + W+ + Q F+ ++ P+ I
Sbjct: 122 GPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTLTERADGEQVTRFVNVGELRPDATI-S 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNS----------- 225
+ D K ++ + + A L V + Q + +
Sbjct: 181 NVRIYEFDSKFRLSNIRIAQSGRYQPPGHWLLTGVTDTQLLDVARAPGTPADALNPVYRA 240
Query: 226 -------TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+L + S + + + + + N R E + +
Sbjct: 241 NQVTLPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTE-NHQDTQRYEIALWKKV 299
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+ P + M +++ + +R+ + V GI G T+ G
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPL 359
Query: 339 AALIPVILTISLSILIL 355
A P ++ + L ++ L
Sbjct: 360 TAATPGLIYLVLGLVGL 376
>gi|294670274|ref|ZP_06735167.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291308011|gb|EFE49254.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 348
Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 49/310 (15%), Positives = 109/310 (35%), Gaps = 18/310 (5%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY K TTLY + + L D+ Y+ + ++P Q+
Sbjct: 6 RYLIKQLSITTLYAMFALLALYSFFDIVAEV-GGVGEGGYTGIKMMQYVLLQIPDHAYQM 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P L+ ++ L SE+ + + G+S ++ + ++ T L+ +A +
Sbjct: 65 MPLAVLIGGLIALSQLASNSEMTVIKTSGMSTKNIIAILLGFGLIFAAATALLGESVAPA 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ +L K NG W++ +Q+ I +++LP+ D+
Sbjct: 125 ANRYAQNLKTTAK-NGKISTGAEGLWIK----EQNNIINVREMLPD-QSLRGIKVFRHDQ 178
Query: 187 KNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDKNSTTLN------IPIKMDGFQK 239
K+ A+ A+I + KL V + +D
Sbjct: 179 NFKLAESWQAESAVIAADGGWKLANVRRSILDGDRVRTEKHDGEYWQAGIRGSLLDVLLV 238
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
Q + + IK + + + + +++ ++ P+ V M L+A + + + +
Sbjct: 239 NPNQMSLTALTAYIKHLEDNKQQ----ADNYKIEWWRKLMYPVATVVMALVALAFTPQST 294
Query: 300 RSNQPRIIVA 309
R + +
Sbjct: 295 RHGNMGLKLL 304
>gi|257487385|ref|ZP_05641426.1| hypothetical protein PsyrptA_29198 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 205
Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 45/207 (21%), Positives = 78/207 (37%), Gaps = 7/207 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L L L + LV + + + + Y+++ P +
Sbjct: 4 LDRYIGKSVLLAILAVLGIILGLVSLFAFIDEMGDISD--TYTLADALSYVMLTAPRRVY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ L +SEL I RA G+SI +++ + +LL + VLV +A
Sbjct: 62 DTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + +GD Q + W + + FI + P + T
Sbjct: 122 PYAENQAQAARSLAQGSGDAQSARHGLWHRQGDE----FIHINTVQPNGLML-GVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKV 211
D + ++ A A D +LK V
Sbjct: 177 DDQRHMLTSSFAKEANFKTDYWELKDV 203
>gi|254446878|ref|ZP_05060353.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
DG1235]
gi|198256303|gb|EDY80612.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
DG1235]
Length = 370
Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 64/372 (17%), Positives = 138/372 (37%), Gaps = 19/372 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSI--SRGAVLAATR 58
M + RY F +LK L L+ + EIQ+ +L +Y + A
Sbjct: 1 MFSVADRYVFTEWLKAFALVLSSMFGLLILF---EIQDSFTDLVSYDATGGQILFYYAIL 57
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
P + +P LV + L+R +E V RA G+S++++ + S+L+
Sbjct: 58 APSFLTVTLPASILVSILYALGQLHRANEFVALRAAGMSVFRVTRSIWLASLLISGGLWY 117
Query: 119 VINPIATSGEKIGIDLIQQWKDNG-----DKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
+ + + + LI + + D + ++ + N +++ +
Sbjct: 118 LNSSLIPWSVEQSNQLITTLRQDSEAKILDSDEIGVVEGLAFDNRRENRMWFINRYSEYK 177
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYG------RIPIDKNS 225
+ +D++ + + R A L E R P +
Sbjct: 178 SQAFGISVSIMDEERREVRRVMARYGYFDEDLGYWTLFDGRERLNDPDTGRERWPPFERL 237
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
++ F ++ SF+++ + + + + E + L+ +
Sbjct: 238 DAKDLTDDPTLMLLFGKRPKDLSFFQLRRITDSFTQEDNPNVLAYEVRLQALMASAASCL 297
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ IA ++ R+N P + V I F+ Y +++ +FG+ G L P AA IP++
Sbjct: 298 IVAGIAIPFAVSGVRTN-PAVGVTKSIGLFFVFYIFTSVLNAFGREGALSPEMAAWIPMV 356
Query: 346 LTISLSILILLQ 357
I L+ +++ +
Sbjct: 357 AMILLAYVLMRR 368
>gi|332299879|ref|YP_004441800.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
DSM 20707]
gi|332176942|gb|AEE12632.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
DSM 20707]
Length = 361
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 62/357 (17%), Positives = 136/357 (38%), Gaps = 11/357 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY F +L T + ++ + + D+ E +++ + + A VP
Sbjct: 6 ISTVDRYIFTQFLATYFFSIVLILAVAIAFDVTEKLDKLLQPEVPLRAIIWDYYANFVPY 65
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I V L SE++ + G+S +LL P+++G+ ++ I T L+ +
Sbjct: 66 YANLFSPLFVFIAVIYVTSRLAENSEIIAILSCGVSFRRLLKPYMLGAAVIAILTFLLSS 125
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G +I ID ++ + ++ I + F+ E+ + F+
Sbjct: 126 FVIPPGNRIRIDFQNRYIKDKRITYANAI----QMQVAPETFMFMSYYNDESKVGYTFSM 181
Query: 182 ITIDKKNKIIHRKDADLAIIYN-DKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGF 237
+ K+ + R A+ + +L+ +G + N IPI F
Sbjct: 182 DRFEGKD-LKSRMMANSIVYDTLHNWQLQDYTITYFGERQDSLLRGNQLDTIIPITPKDF 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S ++ + + + + I + +TL+ S+S
Sbjct: 241 LVTEGDVEMLSTPQLYRSIQQQRMRGA-ATQLYAIELHKRIAMIPASFILTLMGVSLSAR 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + +A G+ F+ +T+ SF +G + P+ AA +P ++ + +S ++
Sbjct: 300 K-RKGGMGLALAVGLSLSFLYILFMTVTSSFAVTGAMSPMVAAWLPNLVYLGISFVL 355
>gi|332704120|ref|ZP_08424208.1| permease YjgP/YjgQ family protein [Desulfovibrio africanus str.
Walvis Bay]
gi|332554269|gb|EGJ51313.1| permease YjgP/YjgQ family protein [Desulfovibrio africanus str.
Walvis Bay]
Length = 360
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 132/358 (36%), Gaps = 14/358 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + L L + + + DL E + E + V ++PLII
Sbjct: 3 VLSRYLLRQNLYLMSICLCLGIAVYLLSDLFERLDDFLE-AGRGLKIMLVYFLVKIPLII 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QI+P + LV +V + EL+ RA GIS +++ F+V S+ + + +
Sbjct: 62 SQILPAVFLVAMLVQLSAMRSNRELLALRAGGISYKAIISFFLVYSLFWSGGQLFISQYL 121
Query: 124 ATSGEKIGIDLIQQ-WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
G + + + + K+ W++ N + + P + + +
Sbjct: 122 GVKGLEYSKRIWAEDVRGKEYVTKTIHKLWLREDND----ILHIDTVQPASGKGRNLSIY 177
Query: 183 TIDKKNK-IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT-LNIPIKMDGF--Q 238
T+ + + ++ +A L V+ R + T L++ F
Sbjct: 178 TLAQDRRSVVQFINAKTFEAKEGNWVLNDVIIIDPIRFTSEYKPTLKLSLGEAFKSFTLA 237
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ A +E+ + + + + T ++ + + M L+A ++
Sbjct: 238 ESRNNPAQLPLWELGRAIHQLEVTGS-NVEGLRTIWHGKLSYAFSITIMALLALAII--- 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + + + G+ + F+ Y + S G+ G L P+A A + + I + L
Sbjct: 294 TFEHNVYLNLTAGLVATFLFYGFFVLGSSAGEMGFLPPIAGAWLGNAVFILGATTRLF 351
>gi|299140954|ref|ZP_07034092.1| membrane protein [Prevotella oris C735]
gi|298577920|gb|EFI49788.1| membrane protein [Prevotella oris C735]
Length = 424
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 60/362 (16%), Positives = 127/362 (35%), Gaps = 18/362 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K ++ T +Y + + + V+D+NE + E + +P
Sbjct: 64 IKRLDWYIIKKFIGTYIYSIALIISISIVVDINENLAKFSEYHAPLKAIVFDYYMNFIPY 123
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ A G+S +L+ P+++ IL+ + +
Sbjct: 124 FANLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMITCILISAVSFYLSG 183
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ I D +K+N +D + +Q+ + + ++ F+
Sbjct: 184 YVIPHSNVIRQDFESLYKNNKKNTAADNVM-LQVGSG---VIAYIQQYDNNTKRGYGFSL 239
Query: 182 ITIDKKNKIIH--RKDADLAIIYNDK--VKLKKVVEYQYG------RIPIDKNSTTLNIP 231
K + H + I + K ++ K++T + P
Sbjct: 240 DKFQDKKLVSHMTATEIQYDTISDSKYHWTALNYKIRKFNGYREQIENGEKKDTTIMMEP 299
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + E F + + I K SN+ + + +++ I +T+I
Sbjct: 300 TDLVYSKGQQETFTNPELSDYISKQIDRGSSNV---VQYQVEYHKRIAASFASFILTIIG 356
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S + R + + G+ F + T+ +F + L PV AA IP + ++
Sbjct: 357 LSLSAKK-RKGGMGLYLGIGLALSFGYIMLQTVSSTFAINANLPPVIAAWIPNFIFAVVA 415
Query: 352 IL 353
Sbjct: 416 YF 417
>gi|261416540|ref|YP_003250223.1| permease YjgP/YjgQ family protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261372996|gb|ACX75741.1| permease YjgP/YjgQ family protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327353|gb|ADL26554.1| putative membrane protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 366
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 62/375 (16%), Positives = 131/375 (34%), Gaps = 39/375 (10%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY +LK L + GA+++ VID + + + + +P I+
Sbjct: 4 SRYLIWNFLKMFLIVVCGAVLIFVVIDFV---GNIKTWLSRDMKAVTDYYLSYLPYILYL 60
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
I P + + N+ R E+ ++ G S ++ L P +L+ I + +
Sbjct: 61 ITPVALFIAVLASVGNMARHLEMSAMQSSGQSPFKTLLPIFFLGVLMSIGSYEMSEHWLP 120
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK-------ILPENHIWED 178
++++ N K+K+ +I Q FI ++K +N + D
Sbjct: 121 DANHKRFEIMET---NAQKRKNP-----RIKEKQDFTFIDSEKNSWFFKHYSGKNKLGRD 172
Query: 179 FTSITIDKKNKIIHRKDADLAII-------YNDKVKLKKVVEY------QYGRIPIDKNS 225
+ + ++ +++ R D + + + P+ + S
Sbjct: 173 VVLL-VRERGRLVERYDVRSIRWIEKDSVTKDGFWRFENGFHRVFKKDGSVDVFPVRQKS 231
Query: 226 TTLNIPIKMDGF---QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
+ + ++ ++ S+ I + S + ET F
Sbjct: 232 MKGKVNTHPNDLINERQLPDEMDSKMVKARIDVLRRSGE----DTRAMETALQFKYSAHW 287
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
M + + LI A++ +SRS G+ F Y + I G++G L P AA
Sbjct: 288 MNLIVLLIGAALCHRYSRSGGLSQKFGVGLLLVFSYYILERIGLKMGENGALSPFWAAWN 347
Query: 343 PVILTISLSILILLQ 357
+ L+ ++L +
Sbjct: 348 SHFIYAGLAFVMLYR 362
>gi|33240287|ref|NP_875229.1| putative permease [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33237814|gb|AAP99881.1| Unclassified ABC-type transport system permease [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 403
Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats.
Identities = 60/379 (15%), Positives = 127/379 (33%), Gaps = 23/379 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRV 59
M +L R+ F+ L + + ++ + + ++ ++ E ++ + ++
Sbjct: 29 MIPLLDRWLFRELLPPFFFAISAFTVVSLSVGVMFDLVRKIVE-SGLALKFALQVFFLKL 87
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + P L+ ++ F L+ SE+ ++IGIS +++ + +L+ T +
Sbjct: 88 PSFLVISFPMAILMATLLTFSRLSSNSEVKALKSIGISTKRMIVAAITLGLLMTGITFIF 147
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQ-----------KSDIIPWMQISNPQQDIFIGAKK 168
+ I S K +++ + P IS AK+
Sbjct: 148 NDLIVPSANKSAEATLRRGLGVSMHSDYVTDIMYSRFGKIVDPSSNISRDGMTHLFYAKE 207
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQY----GRIPID 222
+N D T + + A N + G I
Sbjct: 208 F--QNKTMIDVTLLDFSRLG-YKQMLVAKKGYWNNLEANWEFHDGNILTIAPNGGSTSIS 264
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN-IFHNYRAETQFYFLIVIP 281
+ + K + + + K S + R E + +P
Sbjct: 265 FENYVYPLDSGPKKIAKIPKDANYMTLSDAYKAKDLYKLSGNLKEVRRMEVRIQEKFTLP 324
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ V +LI +S++ + + A I Y + + S G SG L P A
Sbjct: 325 MACVVFSLIGSSLACSPNTRSTQGQGFALSIVLILAYYILSFVFSSLGVSGALSPFVGAW 384
Query: 342 IPVILTISLSILILLQKED 360
PVI+++S + +L + +D
Sbjct: 385 SPVIISLSGGLYLLNKADD 403
>gi|224024955|ref|ZP_03643321.1| hypothetical protein BACCOPRO_01686 [Bacteroides coprophilus DSM
18228]
gi|224018191|gb|EEF76189.1| hypothetical protein BACCOPRO_01686 [Bacteroides coprophilus DSM
18228]
Length = 369
Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats.
Identities = 60/360 (16%), Positives = 132/360 (36%), Gaps = 14/360 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L +Y +L T + + + + V D+NE + + +P
Sbjct: 11 LKRLDKYIIIKFLGTYFFAIALIISIAVVFDINENIDDFINNKAPLKAIVFDYYLNFIPY 70
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S +L+ P+++ + ++ + T ++
Sbjct: 71 YTNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRLMVPYMISAGIIALVTYILST 130
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +G + Q +K+ K+K D + + + ++ N F+
Sbjct: 131 EVIPTGSVTRLKFEQVYKN---KKKVDYVRNI-QLEVDSGVIAYMERYEDYNRTGYRFSL 186
Query: 182 ITIDKKNKII----HRKDADLAIIYNDKVKLKK--VVEYQYGRIPIDKNSTTLN-IPIKM 234
+ + R D A ++ K ++ + E + R I + + I ++
Sbjct: 187 DKFEDHKLVSHLTARRVTYDTATVH--KWIIRDYMIREMKGMRETITRGDRMDSIINMEP 244
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
F Q + + ++ + + K + E ++Y I +T+I S+
Sbjct: 245 QDFLITRGQQETMTSPQLREYIDKQKKRGFANIKIFEVEYYKRIATSFAAFILTVIGLSL 304
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S + R + + GI F TI +F +G + P A IP IL + ++I +
Sbjct: 305 SSQK-RKGGMGLHLGIGIGLSFSYILFQTISSTFAINGNVPPNLAVWIPNILYLFIAIYL 363
>gi|110643218|ref|YP_670948.1| putative permease [Escherichia coli 536]
gi|47155053|emb|CAE85252.1| putative permease [Escherichia coli]
gi|110344810|gb|ABG71047.1| putative permease [Escherichia coli 536]
Length = 359
Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats.
Identities = 55/355 (15%), Positives = 128/355 (36%), Gaps = 18/355 (5%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y ++ + L +L + + Y ++ ++ +P + ++
Sbjct: 7 YLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRTLVELS 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PFI L+ IV L++ SEL R+ G SI+++ +V IL + + +A+
Sbjct: 66 PFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEWVASPL 125
Query: 128 EKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ + + G D + + W + + + F+ K + +
Sbjct: 126 QQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEIFHYRD 180
Query: 187 KNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKMDGFQK 239
+ A A I +DK L V ++ G+ ++ + + + ++
Sbjct: 181 DLSLESYIFARSASIEDDKTWILHGVNHKKWLNGKETLETSDNLAWQSAFTSMDLEELSM 240
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
F+ R I + + + + + + P++ +AM L+A +
Sbjct: 241 PGNTFSVRQLNHYIHYLQETGQ----PSSDYRLALWEKLGQPILTLAMILLAVPFTFSAP 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 297 RSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLMALSL 351
>gi|315608793|ref|ZP_07883769.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
gi|315249487|gb|EFU29500.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
Length = 416
Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats.
Identities = 57/362 (15%), Positives = 126/362 (34%), Gaps = 18/362 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K ++ T + + + + V D NE ++ + + A +P
Sbjct: 57 KILDWYIIKKFIGTYFFSIALIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFIPYY 116
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
P + I L SE++ A G+S +L+ P+++ +L+ T +
Sbjct: 117 SNLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMISCVLIAALTYYLGAY 176
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
G I D +++N +D + + + + F
Sbjct: 177 EIPHGTVIRQDFEALYRNNTKNTAADNV----QLQVDKGVIAYIQHYDNNTKKGYGFKLN 232
Query: 183 TIDKKNKI--IHRKDADLAIIYNDK--VKLKKVVEYQYGRIPI------DKNSTTLNIPI 232
+ K + + + I + K +++ + + + +K++ L P
Sbjct: 233 KFEDKKLVSDLTAMEVQYDTISDTKFHWRMRNWKQRKLQGLKEHITSGAEKDTVILMEPT 292
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + E F S E I K SN+ + + +++ I +T+I
Sbjct: 293 DLVYSKGQQETFTSPELREYISKQIDRGSSNV---VQYQVEYHKRIATSFASFILTVIGL 349
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S+S R + + G+ F + T+ +F + P+ AA P ++ ++
Sbjct: 350 SLSSRK-RKGGMGLYLGLGLALSFGYIMLQTVSATFAINAGAPPMLAAWTPNMVFAIVAY 408
Query: 353 LI 354
+
Sbjct: 409 FL 410
>gi|218246939|ref|YP_002372310.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8801]
gi|257060003|ref|YP_003137891.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8802]
gi|218167417|gb|ACK66154.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8801]
gi|256590169|gb|ACV01056.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8802]
Length = 393
Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats.
Identities = 67/362 (18%), Positives = 134/362 (37%), Gaps = 25/362 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY F L + + L V + L ++ ++ E I+ + ++P
Sbjct: 20 IMDRYLFIEILLPFFFGMGIFTSLGVAIGTLFDLVRRVTE-SGLLITVALKILVLKMPGF 78
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I P L+ ++ + L+ SEL+ R++GISI++L+ P ++ S+L+ +V +
Sbjct: 79 IVLAFPMAMLLAALMAYSRLSSDSELIAMRSLGISIYRLVIPAILFSLLVTGLAFIVNDW 138
Query: 123 IATSGEKIG----IDLIQQWKDNGDKQKSDIIP---WMQISNPQQDIFI----GAKKILP 171
IA + + + + + +Q++ I P +Q + ++ + A+
Sbjct: 139 IAPAATHEAAVTLEKAVSKERPSFAEQRNIIYPEYRIIQQEDGKETTVLSRLFYAENFNG 198
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNST 226
E + + N+I+ + A + N Y R +
Sbjct: 199 EEMEELTILDRSQEDVNQIVTSQSATWNVAQN-TWDFFNGTIYIIAPDGSYRNIVRFQHQ 257
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLV 285
L +P + F S + + + S R E + +P + +
Sbjct: 258 QLKLPRAPLDLANRRQNFTEMSIAQTKEYLEVMKLSGNKERVRKVEVRIQEKYALPFVCL 317
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSG--FMLYTIITIMKSFGKSGILLPVAAALIP 343
L+ A++ + ++GI G F Y + + S G GIL P AA P
Sbjct: 318 VFGLVGAAMGVRPQ---NTSRATSFGICVGLIFSYYLLSFVTSSLGIWGILTPFLAAWAP 374
Query: 344 VI 345
I
Sbjct: 375 NI 376
>gi|87124323|ref|ZP_01080172.1| possible permease [Synechococcus sp. RS9917]
gi|86167895|gb|EAQ69153.1| possible permease [Synechococcus sp. RS9917]
Length = 388
Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats.
Identities = 50/373 (13%), Positives = 123/373 (32%), Gaps = 19/373 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRVP 60
+L R+ + L+ + ++ + + E+ ++ E + + R+P
Sbjct: 16 IPLLDRWLLGELIGPLLFAIAAFTVVSLSVGVMFELVRRIVE-SGLPVGIAVQVLLLRLP 74
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P TL+ ++ + L+ SEL R++GIS +++ P + ++++ T +
Sbjct: 75 SFLVISFPMATLMATLLAYSRLSANSELTALRSVGISATRMIAPALALALVMTGLTFVFN 134
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM----QISNPQQDIFIGAKKILP----E 172
+ I +Q+ + ++ + G ++
Sbjct: 135 DVIVPRTSLSAEITLQRALGRSVSTEKGNNIIYSRFGRLVAGDGESETGLAQLFYAKKFN 194
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGR----IPIDKNST 226
+ T + + AD A K + D +
Sbjct: 195 EGVMSGVTVLDFSRLG-FTQMLVADEARWNERESKWEFLDGQILTLSPSGSVTSADFDRY 253
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN-IFHNYRAETQFYFLIVIPLMLV 285
+ K + + + E I+ +++ R + +P+ +
Sbjct: 254 LYPLSAAPIRIAKLPKDANNMTVAEAIEAERMLDEAGDRKEARRMRVRIQEKFTLPMACL 313
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
LI +S+ + + + + Y + S G G L PV AA PV+
Sbjct: 314 VFGLIGSSLGAKPNGRTSRSQGFGISVVLILVYYVLSFSFSSLGVKGTLPPVVAAWAPVL 373
Query: 346 LTISLSILILLQK 358
++++ +LL++
Sbjct: 374 ISLA-GGGLLLRQ 385
>gi|33865647|ref|NP_897206.1| permease [Synechococcus sp. WH 8102]
gi|33632817|emb|CAE07628.1| possible permease [Synechococcus sp. WH 8102]
Length = 385
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 54/373 (14%), Positives = 118/373 (31%), Gaps = 18/373 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L R+ L L+ + ++ I + + + +P
Sbjct: 12 IPLLDRWLVGEILAPLLFAVAAFTVVGLSIGVMFELVRRLVEDGLPAWTALQVMLLSLPR 71
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P TL ++ + L SEL R++G+S +L+ P +V S LL T+L +
Sbjct: 72 FLVLSFPMATLFATLLAYSKLTANSELTALRSVGVSTVRLVVPALVLSALLTGMTLLFND 131
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDI-IPWMQISNPQQDIFIGAKKILP--------E 172
I +Q+ + I + + ++ + + L +
Sbjct: 132 VIVPQANTQAEVTLQKALGRALATEKGKDIIYSRFGRVREPGSERSGRGLKQLFYSRRFD 191
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYG----RIPIDKNST 226
D T + + A+ A+ K + + +D +
Sbjct: 192 KGEMVDVTVLDFSRAG-FRQMLVAERALWNEGEAKWEFRDGQILTLNLNGSTTRVDFDRY 250
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLV 285
+ + + + + E I+ ++ R + + P+ V
Sbjct: 251 LYPLSSGPLKVARLPDDANNMTIAEAIEAERVEAEAGNLKAARKLQVRIQEKFTFPMACV 310
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
LI +S+ I Y + S G G+L + AA +PV+
Sbjct: 311 VFGLIGSSLGSRPGSRTSRSQGFGISILLILGYYALSFSFSSLGVKGVLPALLAAWLPVL 370
Query: 346 LTISLSILILLQK 358
+++ +LL++
Sbjct: 371 ISLGAG-TLLLRQ 382
>gi|160902798|ref|YP_001568379.1| permease YjgP/YjgQ family protein [Petrotoga mobilis SJ95]
gi|160360442|gb|ABX32056.1| permease YjgP/YjgQ family protein [Petrotoga mobilis SJ95]
Length = 1153
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 63/361 (17%), Positives = 144/361 (39%), Gaps = 21/361 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L++Y K ++ L+ ++ V + +L +++ N S+ +L +P I
Sbjct: 4 LFKYVSKEFIPPFFMGLIAFIVFVSL-ELLYQLSEIIVRNNVGFSKLLILIWYHLPYFIS 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IP L V L+ +E++ + +GI + +L+ PF+ S+LL FT + N I
Sbjct: 63 MGIPVGVLFGIFWVISKLSSANEIIALQTLGIPMKKLIIPFMTISLLLSFFTFALFNTIV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + + + ++ + + + K+I E+ I D +
Sbjct: 123 PVSNYKAKEAMALYVYQRPQAQIEENQFVDVGDGRYLFV---KQIDRESGILYDV--LLY 177
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-----IPIDKNSTTLNIPIKMDGFQK 239
+ KN +A A D +K ++ + I + L+I ++ F
Sbjct: 178 EVKNDYTAVFNAQQAQKGPDGWYMKNGRMFRTNEDGFLDLDITFDQLQLDIQEDVEEFLN 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
FS+ + E+ +K++ +K + + L + + ++ ++SL +
Sbjct: 238 FSKSANEMTSKELKEKITTFSKLGL-DVSGLIVSYQSKFANSLAPLVICILGIALSLFLN 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIIT----IMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+++ + + + F+L I + + GK I+ P + IP I+ + +
Sbjct: 297 LTSKS-----WSVITTFVLVIIYQGSGAWLSALGKEHIINPTISVWIPNIIFGIIGTFLF 351
Query: 356 L 356
L
Sbjct: 352 L 352
>gi|145588806|ref|YP_001155403.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047212|gb|ABP33839.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 384
Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats.
Identities = 61/379 (16%), Positives = 122/379 (32%), Gaps = 31/379 (8%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P I RY + + L + L D+ + Y+++ + + P
Sbjct: 6 PYIYERYLARQIYAAFGFILFALVALFLFFDILSELGSVQ--GQYTLALALLHVLLKAPS 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I +IIP L+ +I VF L SE I R G+ + + L S+ L + T+++
Sbjct: 64 RISEIIPIAGLIGSIYVFAMLASQSEFTILRIAGLDVKRGLITLGKISLPLIVLTLVMSE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW----MQISNPQQDIFIGAKKIL----PEN 173
E + + + + W ++ + + G + + ++
Sbjct: 124 WAGPYTEAKSEQIRMKALGSSYSSQFKTGVWVKDRLRDEDGSGPVRPGVRYVNVGKVEKD 183
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRI-------PIDKNS 225
+ D + ++ + A L V E ++ I P+
Sbjct: 184 NEIRDIRMYEFNDVYNLLSIRSAVSGHFDETGIWVLNDVTETRFKEIKQTDPLNPVFSAQ 243
Query: 226 T---------TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYF 276
T + P + E+ + S I + + + R F+
Sbjct: 244 TLTHPILTLESEVTPQILSVLLISPEKMSILSLGRFIDHLQENKQ----DVQRHSIAFWK 299
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
+V P + M +A + R+ I V GI G ++ + G
Sbjct: 300 KVVYPFTIFVMLALALPFAYLKVRAGSVGIKVFGGIMLGMSFQLFNSLFSNVGMLSAWPA 359
Query: 337 VAAALIPVILTISLSILIL 355
AL P +L L+++ L
Sbjct: 360 FMTALTPPLLYFLLALMGL 378
>gi|315185938|gb|EFU19702.1| permease YjgP/YjgQ family protein [Spirochaeta thermophila DSM
6578]
Length = 361
Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats.
Identities = 58/361 (16%), Positives = 131/361 (36%), Gaps = 13/361 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ R+ ++L L+ + ++ +IDL + + + + L +P +
Sbjct: 3 IITRFALSWFLPLFFAALVSFVTILELIDLFTNLVAYID-ADLTTFQILHLQLLYLPKCV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P TL +L+ ++EL+ GIS+++ + PFVV +L + +
Sbjct: 62 TYSLPIATLFAVAFSLGSLHASNELIALFGAGISLYRFVLPFVVCGLLFSGAYFFIEELL 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A +L+ + + + + + + + ++ +
Sbjct: 122 AIPSLTQKQELMAILMGRTSPTQ---VVNVTLVGEENRLVVHTRRYDDRSRTITRVLVYE 178
Query: 184 IDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPI-----KMDG 236
D++ R +A+ ++ L++V Y K + + + +
Sbjct: 179 KDEEGAFASRIEAERGTWDPEQREWVLQRVRRYIRDEEGNLKEESFEKLRTDLGEIQPED 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F + + E + + ++ + + T +Y I + L+A+SV+
Sbjct: 239 FLQTRHSIDKMTLAEAGRWIQTLKRAGLPYREAL-TDYYKRISFAFTSFIVALLASSVAG 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
F +N + + + G Y + F K G L PV A +PV++ S SIL
Sbjct: 298 RFK-ANALLLSLLLSLSIGVSYYVFQMVTTLFAKLGYLPPVVGAWLPVLVFFSGSILFFK 356
Query: 357 Q 357
Sbjct: 357 Y 357
>gi|167753885|ref|ZP_02426012.1| hypothetical protein ALIPUT_02170 [Alistipes putredinis DSM 17216]
gi|167658510|gb|EDS02640.1| hypothetical protein ALIPUT_02170 [Alistipes putredinis DSM 17216]
Length = 372
Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats.
Identities = 52/359 (14%), Positives = 125/359 (34%), Gaps = 11/359 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY +L T + + +++V + D E + E + +P
Sbjct: 13 FKILDRYILGKFLSTYFFAIAMIIVVVVIFDYVEKIDNFTETKAPLKAIIFDYYLNFIPF 72
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I Q T + I + +E+V + G+S +L+ P+ +G++++ ++ +
Sbjct: 73 FINQFSGLFTFIAVIFFTSKMAYQTEIVAMLSGGMSFRRLMWPYFLGALIIASLSLGLNL 132
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + Q+ + + P F + E++ F+
Sbjct: 133 WLIPVSQRSCVAFENQYIPR-KARFQYDKNIYRQIEPG--TFAYIRNYSKESNQASFFSL 189
Query: 182 ITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMD 235
+ + +A + ++ + + ++ + I + ++
Sbjct: 190 EEYES-GAMTASLEAAEVRFNPETKRWSARRYTTRTFDSLGVETFTQHRNLDTLINLDVN 248
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + + + E+ + + + + + P+ +TLI S+S
Sbjct: 249 ELGRTDQLIKTMNIVELNQFLEQQRSKGSDSINIIQVEQHARYAYPVGTFILTLIGVSLS 308
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + GI F I + F KSG L P A IP IL + +++ +
Sbjct: 309 SRKVR-GGTGLHIGIGIALCFSYILFIRFFEEFAKSGTLPPWIAVWIPNILYLCIAVYL 366
>gi|322418227|ref|YP_004197450.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
gi|320124614|gb|ADW12174.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
Length = 387
Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats.
Identities = 54/368 (14%), Positives = 130/368 (35%), Gaps = 20/368 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L+RY F L ++ ++ + ++ + E + + + +P
Sbjct: 1 MKRTLYRYIFNEIPPPFLVGMVAFTFVLLMGRFLKLAEMVVEK-GVPFTDVLRMVSYLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IP L+ ++ F L+ SE+ ++ GIS++ LL P +V S+L + + V
Sbjct: 60 SFWLFTIPMALLLSILLAFGRLSGDSEVTAMKSCGISLYGLLPPPLVFSLLASLACLWVT 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
G L+ + N S I +N D+ I A + + E
Sbjct: 120 VYAVPWGNSSFKKLMLEIARN---SASVSIKEKVFNNAFPDMVIYADTLDTKAQNMEGV- 175
Query: 181 SITIDKKNKIIHRKDADLAIIYND------KVKLKKVVEYQYGRIP----IDKNSTTLNI 230
+ ++ K A +++D + +LK ++ + L +
Sbjct: 176 IVHDERDPKAPTTIFAASGALFSDPKAHSMEFQLKNGSIHRSEDGANYRMVQFQEYILRV 235
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ + K + + + E++ + ++ + + + +P + T +
Sbjct: 236 ALA-EPTPKGPRKASEMTIDELVHPPQVAAAKDVLAR---RLELHSRLALPFSCIVFTFV 291
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ ++ RS + + I Y ++ + G+ +L P + P +L +
Sbjct: 292 GVPLGIQNRRSGK-ASGFSLSIAVILCYYIALSGFDTLGEKALLPPFLSGWGPNLLFLLA 350
Query: 351 SILILLQK 358
+ ++
Sbjct: 351 GGYLFVKT 358
>gi|260912301|ref|ZP_05918852.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
gi|260633602|gb|EEX51741.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
Length = 402
Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats.
Identities = 58/362 (16%), Positives = 127/362 (35%), Gaps = 18/362 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL Y + ++ T ++ +L + + V D+NE + + + A VP
Sbjct: 42 LKILDWYIIRKFIGTYVFSILLIISIAIVFDVNENLAKFTQFHAPLKAIVFDYYANFVPY 101
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L TSE++ A G+S +L+ P++V +L+ + +
Sbjct: 102 FANLFSPLFVFISVIFFTSKLAGTSEIISMLAAGVSFNRLMRPYMVSCLLISGLSFYLSG 161
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G I + +K++ ++ + + + + + F+
Sbjct: 162 YVIPHGTVIKQNFESMYKNSKKNTSAENV----QLQVDRGVIAYIQHYDDKAKRGYGFSL 217
Query: 182 ITIDKKNKIIH--RKDADLAIIYNDK--VKLKKVVEYQYGRIPID------KNSTTLNIP 231
+ K + H + I + K ++ + + K++ + P
Sbjct: 218 DKFENKKLVSHMTASEIQYDTISDSKYHWQVSNWRIREMKALREKITYGDRKDTLIMMEP 277
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + E F + I K SN+ + E +++ I +T I
Sbjct: 278 ADLVFSKGQQETFTNPELSAYISKQIGRGSSNV---VQYEVEYHKRIAASFASFILTTIG 334
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S R + + G+ F + T+ +F + P+ AA IP +L ++
Sbjct: 335 LSLSSRK-RKGGMGLYLGIGLALSFGYILLQTVSATFAVNADTPPMLAAWIPNLLFAVVA 393
Query: 352 IL 353
Sbjct: 394 YF 395
>gi|237723640|ref|ZP_04554121.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229437988|gb|EEO48065.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
Length = 390
Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 123/359 (34%), Gaps = 18/359 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K +L T + + + + V D+NE ++ + +P
Sbjct: 35 LDIYIIKKFLGTYFFAIALIISIAVVFDVNENIDRFINNKAPLKAIVFDYYMNFIPYFSN 94
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
P + I L SE++ + G+S +++ P+++ + ++ + T + +
Sbjct: 95 LFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIISVVTFGLGAYVI 154
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G +D ++K ++ + + ++ N F+
Sbjct: 155 PKGNVTRLDFEDRYKKKKKQEYVRNV----QLEVDSGVIAYIERYENYNKTGYRFSLDKF 210
Query: 185 DKKNKIIHRKDADLAIIYN---DKVKLKKVVEYQYGRIPID-KNSTTLNIPIKMDG---- 236
D K K++ A K +K + + + L+ IKM+
Sbjct: 211 DDK-KLVAHLTARSVTYDTVSVHKWTIKNYMIREMEGMREKITRGDRLDTIIKMEPQDFL 269
Query: 237 -FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + S E I K +NI E ++Y I + +T I S+S
Sbjct: 270 IMKGQQQTMTSPELKEYIDKQKRRGFANI---KEFEIEYYQRIAMSFAAFILTTIGVSLS 326
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + G+ F T+ +F +G P+ A IP IL ++I +
Sbjct: 327 SRKMK-GGMGLHLGVGLALSFSYILFQTVSATFAVNGNTPPIIAVWIPNILYTFIAIYL 384
>gi|146297810|ref|YP_001192401.1| permease YjgP/YjgQ family protein [Flavobacterium johnsoniae UW101]
gi|146152228|gb|ABQ03082.1| permease YjgP/YjgQ family protein [Flavobacterium johnsoniae UW101]
Length = 362
Score = 148 bits (375), Expect = 9e-34, Method: Composition-based stats.
Identities = 64/362 (17%), Positives = 131/362 (36%), Gaps = 12/362 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I+ +Y K YL T +L + + VID++E N+M E ++ A+
Sbjct: 1 MLTIIDKYILKRYLATFSVMILLFIPIGIVIDVSEKVNKMLEN-KIPFTQIAIYYYNFTV 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P + I L +E++ + GIS + L P+++G+ ++ +F +L+
Sbjct: 60 YFANSLFPIFLFLSVIWFTSKLANNTEIIAILSSGISFTRFLRPYIIGASIVSVFVLLMG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
I + + + + KQ + + + N IF+ E+ +
Sbjct: 120 FFIVPAASEGFNNFRYTYLKGNGKQLMRGENTNVFRQINDHDFIFVN--SFNEESKTAFN 177
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIP---IDKNSTTLNIPIK 233
FT +K+ K+ ++ A K L + G + + +
Sbjct: 178 FTLEHFEKE-KLTYKITASRIKWDPKKKIYTLYDYTKRTVGDLNDVIEKAPEKNVGFKFE 236
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + ++I + K + Y +P+ +T+IA +
Sbjct: 237 LADLTPVVYIAETLTLGKLIDFIEKERKRGSGNINTYLVVLYKKYSVPVSAFILTIIAVA 296
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
VS R + +A GI F I + + P+ A P I+ L++
Sbjct: 297 VS-SMKRRGGMGMNLAIGIAIAFSFVFFDKIFGTLAEKSTFSPLLAVWFPNIVFGILAVY 355
Query: 354 IL 355
+L
Sbjct: 356 LL 357
>gi|150005671|ref|YP_001300415.1| hypothetical protein BVU_3161 [Bacteroides vulgatus ATCC 8482]
gi|212693333|ref|ZP_03301461.1| hypothetical protein BACDOR_02845 [Bacteroides dorei DSM 17855]
gi|254884104|ref|ZP_05256814.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|265753721|ref|ZP_06089076.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|294776587|ref|ZP_06742057.1| putative membrane protein [Bacteroides vulgatus PC510]
gi|319640869|ref|ZP_07995580.1| hypothetical protein HMPREF9011_01177 [Bacteroides sp. 3_1_40A]
gi|149934095|gb|ABR40793.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
gi|212664098|gb|EEB24670.1| hypothetical protein BACDOR_02845 [Bacteroides dorei DSM 17855]
gi|254836897|gb|EET17206.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|263235435|gb|EEZ20959.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|294449575|gb|EFG18105.1| putative membrane protein [Bacteroides vulgatus PC510]
gi|317387506|gb|EFV68374.1| hypothetical protein HMPREF9011_01177 [Bacteroides sp. 3_1_40A]
Length = 390
Score = 148 bits (375), Expect = 9e-34, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 123/359 (34%), Gaps = 18/359 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K +L T + + + + V D+NE ++ + +P
Sbjct: 35 LDIYIIKKFLGTYFFAIALIISIAVVFDVNENIDRFINNKAPLKAIVFDYYMNFIPYFSN 94
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
P + I L SE++ + G+S +++ P+++ + ++ + T + +
Sbjct: 95 LFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIISVVTFGLGAYVI 154
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G +D ++K ++ + + ++ N F+
Sbjct: 155 PKGNVTRLDFEDRYKKKKKQEYVRNV----QLEVDSGVIAYIERYENYNKTGYRFSLDKF 210
Query: 185 DKKNKIIHRKDADLAIIYN---DKVKLKKVVEYQYGRIPID-KNSTTLNIPIKMDG---- 236
D K K++ A K +K + + + L+ IKM+
Sbjct: 211 DDK-KLVAHLTARSVTYDTASVHKWTIKNYMIREMEGMREKITRGDRLDTIIKMEPQDFL 269
Query: 237 -FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + S E I K +NI E ++Y I + +T I S+S
Sbjct: 270 IMKGQQQTMTSPELKEYIDKQKRRGFANI---KEFEIEYYQRIAMSFAAFILTTIGVSLS 326
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + G+ F T+ +F +G P+ A IP IL ++I +
Sbjct: 327 SRKMK-GGMGLHLGVGLALSFSYILFQTVSATFAVNGNTPPIIAVWIPNILYTFIAIYL 384
>gi|88810917|ref|ZP_01126173.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
gi|88791456|gb|EAR22567.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
Length = 367
Score = 148 bits (375), Expect = 9e-34, Method: Composition-based stats.
Identities = 62/344 (18%), Positives = 125/344 (36%), Gaps = 15/344 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + + + L IDL E + G+ NY ++ +P + ++
Sbjct: 13 RYLMRAVAGGFVVAAAVLLPLFSFIDLIEQLDDTGQ-GNYHSAQAFAYVGLILPRRLIEL 71
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
PFI L+ V L EL R++G+S + + +LL + + +A+
Sbjct: 72 GPFIALLGTTVALGGLASHRELTALRSVGVSPGGIALAALKAGVLLILLLAAIDQLVASP 131
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ + +S + + + +GA ++ I D +
Sbjct: 132 LQQHAFGMRATALSGDSNAESGSGAALWARRGDRLLRVGALRL---GRIPADIEIFHFNA 188
Query: 187 KNKIIHRKDADLAIIYNDK-VKLKKVVEYQY-GRIPIDKNST-----TLNIPIKMDGFQK 239
+ ++ AD A I++ +L V+ + P+ T P ++ +K
Sbjct: 189 EGHLVRYIHADYAEIHHRAPWRLNTVLVKAFMAGTPVTTRHASMVWQTFLTPAQIGLLEK 248
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+E + Y ++ + + +S+ + + +PL AM L+A S+
Sbjct: 249 PAESLSPVQLYGYVQYLRSTGQSSAV----YAVMLWQKLGLPLTAAAMILLAVPFSIGAP 304
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
R +A G +G +Y I+ + G L P AL P
Sbjct: 305 RGASIGSRIALGAIAGLGVYLADQIIVNMGLLLDLSPPLIALGP 348
>gi|187250533|ref|YP_001875015.1| permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
gi|186970693|gb|ACC97678.1| Permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
Length = 370
Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 61/355 (17%), Positives = 133/355 (37%), Gaps = 10/355 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P IL+RY + + + ILV + D E + + +P
Sbjct: 10 PKILYRYIASKFWMPFFFAMAMFCILVLLGDFFENIKSITN-GYATFRLILKYCFLNLPS 68
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++P L+ + V ++ E A G QL P + IL+ L+
Sbjct: 69 WLGMLLPVACLLAVLFVISDMVAGGEWTACLASGYRPGQLFVPLIACVILVVFLNSLMQE 128
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + ++ ++ I + + + + + A+ + + T+
Sbjct: 129 FVYPRVSQKAEQVFRRQLRGDKDFQAGIERNITLRINPRQMLL-AQTLQSGSLTMYGITT 187
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVE--YQYGRIPIDKNSTTLNIPIKMDGF 237
++ +I + A + D+ K V ++ G ++ TL +K+
Sbjct: 188 EFYNENWEIEKQIVARNLVWDKDEKIWFYKDGVIRYFEEGITIREEVFDTLESDLKVAPK 247
Query: 238 QKFSEQFA--SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ S E++KK+SF +S + Y+ +T + + +P+M + M LI +
Sbjct: 248 DISVGDIEEKAISVRELLKKISFLGRSGLV-TYKEKTNLHNKLAMPVMTIIMCLIGMPFA 306
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ R I + + F + ++T+ + G++GIL P A V+L +
Sbjct: 307 V-TVRKRGKVINIIAALVMSFSFWWVMTMASTAGQNGILSPFIAGWGIVVLAAAA 360
>gi|67924129|ref|ZP_00517574.1| permease YjgP/YjgQ [Crocosphaera watsonii WH 8501]
gi|67854019|gb|EAM49333.1| permease YjgP/YjgQ [Crocosphaera watsonii WH 8501]
Length = 400
Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 49/372 (13%), Positives = 127/372 (34%), Gaps = 22/372 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY + L+ + +L I N + + + + +VP
Sbjct: 29 LMDRYIATQLINPLLFSVGLVSVLGVAIGYLSDLADKVVDSNLPLIQASEILLLKVPEFT 88
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P ++ ++ + L+ SEL+ R G+S+++L+ P VV S+L+ T LV +
Sbjct: 89 AYALPISVMLSTLLTYGRLSSDSELIAFRGCGVSLYRLIIPAVVMSLLVTGVTFLVSELV 148
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPW--------MQISNPQQDIFIGAKKILPENHI 175
+ ++ ++ + + + ++ + +
Sbjct: 149 VPAANYRATGILVEYLQEEHPYWQNKDIFYPDYEQVVLPNGEKEKQLKHLFFAEKFDGQN 208
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTL---NI 230
++ T + + N++ +D A + Y+ K + +
Sbjct: 209 LKNLTVLEWLE-NRLNRIVVSDSATWNGQEETWDFFNGTLYKLAPDASYKEADPFEHRQL 267
Query: 231 PIKMDGFQ-----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
P+ F+ + + + ++ + + + + P + V
Sbjct: 268 PLSKAAFEFALQGRDPYEMNIIQASQYMRILKMMGDDKKLRT--FQVRIQQKLAFPFICV 325
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+I +S+ ++ + F Y + ++ S G G++ PV A +P I
Sbjct: 326 VFGVIGSSLGSTPQNMSR-ATGFGLSVVIIFAYYLLGFLIGSLGLMGLISPVLAGWLPNI 384
Query: 346 LTISLSILILLQ 357
L + + +L +
Sbjct: 385 LGLVMGGYLLYR 396
>gi|187736000|ref|YP_001878112.1| permease YjgP/YjgQ family protein [Akkermansia muciniphila ATCC
BAA-835]
gi|187426052|gb|ACD05331.1| permease YjgP/YjgQ family protein [Akkermansia muciniphila ATCC
BAA-835]
Length = 396
Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 49/367 (13%), Positives = 120/367 (32%), Gaps = 25/367 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y + + + ++ + D + + L + + +++P+I+
Sbjct: 9 ILDKYVARTWFTAFIMCTAILTLIYIIGDFADNVGDLMNL-DAPLMGTFRFYLSQLPMIL 67
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P+ L+ + L+ +SE+ G S+ ++ P ++G++ I+ +
Sbjct: 68 NLILPYTLLLGTLWALTKLSSSSEITGMLQSGRSLLRINTPIIIGAVFASIYFGIFGFHW 127
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + + N + S + + + I + +
Sbjct: 128 APNSALYRKLMFSSLSQNKNNHASQSTIYKNDAESRIWYLGNPPGIDSPGNPFRQVRVEQ 187
Query: 184 IDKKNKIIHRKDADLAIIYN--DKV----------------KLKKVVEYQYGRIPIDKNS 225
K+ + AD A +L V + K
Sbjct: 188 FSAPGKMKYELFADEATWDPASRTWTFRQAIKRNYSQEEPRQLHDVPVFAGQEYQTLKEH 247
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
P ++ + + + E+IK S +N + +T+++ I +
Sbjct: 248 YP-ETPWQLISPNVRVDTQGTPALQELIK----SGTTNARYLRSLQTEWHVRIARIFSCI 302
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+T IA ++ F R + + +F + + + +G L A +P I
Sbjct: 303 ILTFIAIPSAITFQRRSAMS-GIGIALFLAAAMLFLYEFFPTLASAGYLPTWLGAWMPNI 361
Query: 346 LTISLSI 352
+ ++I
Sbjct: 362 IYTIIAI 368
>gi|332829399|gb|EGK02053.1| hypothetical protein HMPREF9455_00175 [Dysgonomonas gadei ATCC
BAA-286]
Length = 365
Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 56/363 (15%), Positives = 132/363 (36%), Gaps = 15/363 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ IL RY K +L T ++ ++ + + V D+NE ++ + + VP
Sbjct: 3 ILSILDRYIIKKFLGTYIFSIILIISIAVVFDINEKLDKFLDKKAPLTAIIFDYYVNFVP 62
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ I L SE++ + G+S +L+ P+++ + ++ +F+ ++
Sbjct: 63 YYTNLFSALFVFIAVIFFTSKLADNSEIIAMLSNGMSFKRLMKPYMISAGIIAVFSFVLS 122
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ I I ++ + + + I + + + ++ + + +
Sbjct: 123 SFIIPPANVTRIKFQNKYVRDKSVEYASGI----QLQVDKGVILYIERFDNKTKEGYNLS 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPI-----DKNSTTLN-IPIK 233
I + ++ R A + +L + + DK TTLN +P
Sbjct: 179 LDKI-EDKELKSRLTAQRIKYDSAYHWELYNYKIRELQGMREVISNGDKIDTTLNVVPSD 237
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKS--NIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
EQ + Y+ I++ + + E +F+ +T+I
Sbjct: 238 FLISVNDFEQMTTPVLYKYIQRQRDKGIATVGDVSITQFEIEFHKRFASVFSAFILTIIG 297
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
AS+S + + + G+ T+ SF SG + A IP ++ ++++
Sbjct: 298 ASLSARKVK-GGMGLNIGIGLGLSVSYIMFQTVSSSFAVSGTMPAWLAVWIPNLVFMAIA 356
Query: 352 ILI 354
+
Sbjct: 357 AYL 359
>gi|116074701|ref|ZP_01471962.1| possible permease [Synechococcus sp. RS9916]
gi|116067923|gb|EAU73676.1| possible permease [Synechococcus sp. RS9916]
Length = 389
Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 49/372 (13%), Positives = 125/372 (33%), Gaps = 21/372 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L R+ + ++ + ++ + + + + + R+P
Sbjct: 16 IPLLDRWLISELVGPLIFAIAAFTVVSLSVGVMFELVRKIVESGLPVLIALQVLLLRLPS 75
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P TL+ ++ + L+ SEL R++G++ +++ P + S+++ T + +
Sbjct: 76 FLVISFPMATLMATLLAYSRLSANSELTALRSVGVTARRMIAPALALSLVMTTLTFVFND 135
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQ-KSDIIPWMQISN----PQQDIFIGAKKILP----E 172
I + +Q+ K D I + + + D G ++
Sbjct: 136 VIVPRANRNAEVTLQRALGKAIATEKGDDIVYSRFGRLAGADEGDRTRGLAQLFYAREFR 195
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYN--DKVKLKKV----VEYQYGRIPIDKNST 226
+ T + + AD A + K + + + G I +
Sbjct: 196 KGTMQGVTLLDFSRVG-FTQMLVADEAKWNDKEGKWEFLNGQSVTLTPEGGTITAQFDRY 254
Query: 227 TLNI---PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ P+++ K + E + + + R + +P+
Sbjct: 255 LYPLSAAPVRIAKLPKDANNMTVLEAVEAEQLLRDAGDRK--EARRLRVRIQEKFTLPMA 312
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ LI +S+ + + + + Y + S G G L P+ AA +P
Sbjct: 313 CLVFGLIGSSLGAKPNNRTSRSQGFGISVVLILVYYVLSFSFSSLGVKGTLPPLLAAWMP 372
Query: 344 VILTISLSILIL 355
V+++++ +L
Sbjct: 373 VLISLAGGWTLL 384
>gi|313887034|ref|ZP_07820734.1| permease, YjgP/YjgQ family [Porphyromonas asaccharolytica
PR426713P-I]
gi|312923560|gb|EFR34369.1| permease, YjgP/YjgQ family [Porphyromonas asaccharolytica
PR426713P-I]
Length = 361
Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 61/357 (17%), Positives = 136/357 (38%), Gaps = 11/357 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY F +L T + ++ + + D+ E +++ + + A VP
Sbjct: 6 ISTVDRYIFTQFLATYFFSIVLILAVAIAFDVTEKLDKLLQPEVPLRAIIWDYYANFVPY 65
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I V L SE++ + G+S +LL P+++G+ ++ I T L+ +
Sbjct: 66 YANLFSPLFVFIAVIYVTSRLAENSEIIAILSCGVSFRRLLKPYMLGAAVIAILTFLLSS 125
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G +I ID ++ + ++ I + F+ E+ + F+
Sbjct: 126 FVIPPGNRIRIDFQNRYIKDKRITYANAI----QMQVAPETFMFMSYYNDESKVGYTFSM 181
Query: 182 ITIDKKNKIIHRKDADLAIIYN-DKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGF 237
+ K+ + R A+ + +L+ +G + N IPI F
Sbjct: 182 DRFEGKD-LKSRMMANSIVYDTLHNWQLQDYTITYFGERQDSLLRGNQLDTIIPITPKDF 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ ++ + + + + I + +TL+ S+S
Sbjct: 241 LVTEGDVEMLTTPQLYRSIQQQRMRGA-ATQLYAIELHKRIAMIPASFILTLMGVSLSAR 299
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + +A G+ F+ +T+ SF +G + P+ AA +P ++ + +S ++
Sbjct: 300 K-RKGGMGLALAVGLSLSFLYILFMTVTSSFAVTGAMSPMVAAWLPNLVYLGISFVL 355
>gi|153007032|ref|YP_001381357.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
gi|152030605|gb|ABS28373.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
Length = 358
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 123/361 (34%), Gaps = 13/361 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL+RY + + L G + + +D + L A + +++
Sbjct: 2 ILFRYAARRTFAAFVGSLAGVVAIFLAVDFVDNSASFTGPGWIPA--VLELYANKTAVVV 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+Q+ P ++ + RT E RA+G+ W+L P ++L G V+V +
Sbjct: 60 RQVAPAAMVLGAAIAVSTFRRTREYTAMRALGLGPWRLAGPVAAVTLLAGAALVVVHDVW 119
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIP---WMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ G +Q W + + LP T
Sbjct: 120 GVEATARAEEIRATRFSRGVRQFQQAREPKRWFR--SRDGRRIYHLGASLPGGGFAR-VT 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY----GRIPIDKNSTTLNIPIKMDG 236
+ + ++ R DA D L++V + + +S P +
Sbjct: 177 VLAVTPDFRLAGRIDAARMRPDGDAWMLEEVQDRTFLPDGSVRLERADSRRYEFPEPPEA 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F + + + ++ +++ + + + Y + P V L+A +++L
Sbjct: 237 FAVVPGRPSQLRWRTLVAQIAV-RRHLGLATEEFQLERYDRVAYPFAGVPGALLAVALAL 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+R + + + + + + + G SG + P AA P L ++L I +
Sbjct: 296 RRNRKGHVSAALVESVGVSLLFWGVQGVSFALGLSGRVAPWVAAWAPNALFLALGIAAVR 355
Query: 357 Q 357
+
Sbjct: 356 R 356
>gi|148239646|ref|YP_001225033.1| permease [Synechococcus sp. WH 7803]
gi|147848185|emb|CAK23736.1| Predicted permease [Synechococcus sp. WH 7803]
Length = 388
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 44/369 (11%), Positives = 124/369 (33%), Gaps = 16/369 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L R+ L L+ + ++ + + + ++ + R+P
Sbjct: 16 IPLLDRWLIGELLSPLLFAIAAFTVVSLSVGVMFELVRQIVESGLPVAIAVQVLLLRLPS 75
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ TL+ ++ + L+ SEL R++G++ +++ P ++ ++L+ T + +
Sbjct: 76 FLVISFAMATLMATLLAYSRLSANSELTALRSVGVTATRMIVPALIVALLMSGLTFVFND 135
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDI----IPWMQISNPQQDIFIGAKKI----LPEN 173
+ + +++ + + +I +P G ++ ++
Sbjct: 136 VVVPRANRSAEITLRRALGKAIATEKGSNIVYSRFGRIQDPDGSSSKGLAQLFYARQFKD 195
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQY----GRIPIDKNSTT 227
+ T + + AD A+ + + D +
Sbjct: 196 GVMSGVTVLDFTRAG-FTQMLVADRAVWNERQAKWQFFDGQILTLTPSGSTTSADFDQYL 254
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN-IFHNYRAETQFYFLIVIPLMLVA 286
+ + + + + E ++ ++ I R + + +P+ +
Sbjct: 255 YPLSAAPIRIAQLPKDANNMTVAEALRARELLEQAGDIKEARRLQVRIQEKFTLPMACLV 314
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
LI AS+ + + + + Y + S G G L P+ AA PV++
Sbjct: 315 FGLIGASLGAKPNSRTSRSQGFGISVVLILVYYVLSFSFSSLGVKGTLPPLLAAWSPVLI 374
Query: 347 TISLSILIL 355
+++ +L
Sbjct: 375 SLAGGGWLL 383
>gi|197105523|ref|YP_002130900.1| hypothetical protein PHZ_c2060 [Phenylobacterium zucineum HLK1]
gi|196478943|gb|ACG78471.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
Length = 351
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 57/358 (15%), Positives = 129/358 (36%), Gaps = 13/358 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y F+ L L + ++ ++DL ++ ++ + A A R+P +++
Sbjct: 3 LGLYLFRLAFGRILAALAVLVGILQILDLLDVTTEILDR-ELGAQGVAYYALLRLPRLVE 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q P L ++ F L S + R+ GIS +++ + + L+ +++ +A
Sbjct: 62 QAAPLAVLAGSLFAFAKLAGESAVTAMRSTGISAYRITLLALPAAALVAAAQLVIGMAVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ Q + + D+I ++ + I + + + +
Sbjct: 122 PRTDAALTRWWQATTPREEVKPQDVIT-FRVGDD-----IVSARPSADAQRMSEVVIYRR 175
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVV---EYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D +++ R AD A+ +L + S T ++ +
Sbjct: 176 DGAGRLVQRTAADAAVYDQGAWRLIAPRFEAISEGEVQTGAAESMTWTRSLRPADVRALQ 235
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
++ S E + + ++ +TQ + P + M L+AA +L R
Sbjct: 236 SGGSTISAAE--ARRALHGGVSVRPKTYYDTQLHRAWAAPAACLVMLLLAAPAALANFRG 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
++V + +G + + G+SG + AA ++ +L + LL E
Sbjct: 294 GGTTLMVQC-LAAGLLFLVFDGAFTALGESGAAPAMLAAWGAPVIFGALGVTALLYLE 350
>gi|71064627|ref|YP_263354.1| hypothetical protein Psyc_0046 [Psychrobacter arcticus 273-4]
gi|71037612|gb|AAZ17920.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
Length = 402
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 54/390 (13%), Positives = 139/390 (35%), Gaps = 42/390 (10%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY L + ++G L V + + + +Y++ R P
Sbjct: 21 LKVLSRYVKLNALLAIIAAVIGLWALQLVFSYLSELDSLDD--SYTMGEAIKYIFYRSPY 78
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++Q IP L+ ++ L SELV+ RA GIS++++++ + +++ + +++
Sbjct: 79 FLEQFIPTGALLGAVIGLGLLANNSELVVMRAAGISVYRIVSWVLQPALIFVVLALIINQ 138
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI----------SNPQQDIFIGAKKILP 171
+ ++ ++ + N S W + P +
Sbjct: 139 FVLPHSNQLANEINSK--GNSSLVTSVRGYWTVQPRFENTKRGTTKPDGSDILYIDYADV 196
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYND----------------KVKLKKVVEYQ 215
+ +I + +D + A+ + +L + +
Sbjct: 197 KGNIGQ-VKRWHLDNNGSLQTAIHAEGGQYIGREPLDTVSSKPSEQYRYEWQLNNMTKLM 255
Query: 216 YGRIPID----KNSTTLNIPIKMDGFQKFS---EQFASRSFYEIIKKMSFSNKSNIFHNY 268
+ + TL++P + + E + YE + M + ++ H
Sbjct: 256 INQGFESSQAISPTDTLSLPFAPESVYLLTHQAEDLSLTQLYEHRQFMRQQGQRSLSH-- 313
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
E F+ ++ PL ++++ ++A S R++ + + + G + + ++
Sbjct: 314 --ELAFWQKLLSPLSILSLVIVACSFVFGSLRTHSLGLRIVVALLFGLLFSYVQDLVGFV 371
Query: 329 GKSGILLPVAAALIPVILTISLSILILLQK 358
+ P+ L+P+I + L +L ++
Sbjct: 372 SLATGFSPLLMVLLPIIASALLGEYLLKRQ 401
>gi|220907915|ref|YP_002483226.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7425]
gi|219864526|gb|ACL44865.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7425]
Length = 389
Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats.
Identities = 57/365 (15%), Positives = 120/365 (32%), Gaps = 10/365 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+P +L RY L ++ + + + + Q +S L ++P
Sbjct: 19 LPLLLDRYVLSALLTAFVFSVAAFTGIGVAVGVVFDLVQDFADAQIPLSLLLQLLWLQLP 78
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I +P L+ ++ F L+ SELV +++G+ I++L+ P V+ +L+G
Sbjct: 79 YTISFCLPLGVLLASLSTFNRLSADSELVALQSVGVGIYRLVLPVVLFGLLVGGLAFGFN 138
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + L+Q+ G + P ++I + T
Sbjct: 139 TSLVPASRSQSSQLLQEVVQQGQAVTQAQNIFYPEYGPDREIQRLFYARQFDGQQMYGLT 198
Query: 181 SITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIK 233
+ + + A+ A+ + Y R + L IP
Sbjct: 199 VLDFSQTG-VNQVITAESAVWDSTISVWTFTNGTIYLVDADGSYRNILQFTEQQLQIPRD 257
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVAMTLIAA 292
+ S E + + R + IP + + LI A
Sbjct: 258 PLALATPKPSISEMSLAEARRYLEQLQPDGDPREIRKLQLYIQQQYAIPWQGLILGLIGA 317
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ ++ + + F Y + + + +SG L P+ AA L + +++
Sbjct: 318 GLGIKSQ-PRRKSRGFGLSLVIIFAQYVLSFLTAALARSGGLSPLVAAWSVNGLGLGVAL 376
Query: 353 LILLQ 357
+LL+
Sbjct: 377 WLLLR 381
>gi|78184805|ref|YP_377240.1| permease [Synechococcus sp. CC9902]
gi|78169099|gb|ABB26196.1| possible permease [Synechococcus sp. CC9902]
Length = 384
Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 58/371 (15%), Positives = 118/371 (31%), Gaps = 24/371 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L R+ L+ + +L + + + E+ ++ + I L +P
Sbjct: 14 LLDRWLLAEIAAPLLFAVAAFTVLGLSIGVMFELARRL--VDGLPILVALQLLLLNIPSF 71
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P TL ++ + L+ SEL R++G+S +L+ P + SILL T + +
Sbjct: 72 LVLSLPMATLFATLLAYSKLSSNSELTALRSLGVSTIRLVVPALALSILLTGLTFVFNDV 131
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDII-----------PWMQISNPQQDIFIGAKKILP 171
I +Q+ + P Q S+ A++
Sbjct: 132 IVPRANTQAEITLQRGLGRALATERGKDITFNSFGKIYDPKTQTSSTGLRQLFYARRY-- 189
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYG----RIPIDKNS 225
E D T + + + A+ A+ K + + +
Sbjct: 190 EGGEMLDVTLLDFSRADYRQMWI-AERAVYNESKAMWEFFNGQVLTLNPNGSTTRLAFDE 248
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLML 284
+ + + + + I + + R + P+
Sbjct: 249 NFYPLSSGPLQVAELPDDANDMTLSQAISAEKVESNAGNIKAARKLRVRIQEKFSFPMAC 308
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ LI +S+ I Y + S G SGIL P AA +PV
Sbjct: 309 IVFGLIGSSLGARPGSRTSRSQGFGVSILLILGYYALSVSFSSLGVSGILPPFLAAWLPV 368
Query: 345 ILTISLSILIL 355
++++ L+L
Sbjct: 369 LISLGAGGLLL 379
>gi|30248806|ref|NP_840876.1| hypothetical protein NE0802 [Nitrosomonas europaea ATCC 19718]
gi|30180401|emb|CAD84713.1| putative membrane protein [Nitrosomonas europaea ATCC 19718]
Length = 355
Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 61/363 (16%), Positives = 123/363 (33%), Gaps = 18/363 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I RY L + + L DL + + +G+ Y+ + +P
Sbjct: 2 KICHRYIAWQVLTGMVIATAILLPLFSFFDLLDQLDDVGK-GTYTTWDAFLYTVMLMPRR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
QI PFI L+ + L ELV R G+S + V LL T+ +
Sbjct: 61 FIQIAPFIALLGTVGALGALAVNLELVAMRVAGLSPLMIGLAPVGIGGLLIASTIALEYF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A ++ L + G + + W + + + ++L + D I
Sbjct: 121 VAPQFQQQATILRAVALEQGAELGKGLGIWTR----NERNILRIGEMLHKG-RATDIEVI 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNSTTLNI------PIKMD 235
D + + A A I+++ KL V + I + P +
Sbjct: 176 HFDGEGSMTAHVHAWYADIFDESLWKLHDVTIRTFSPDRITSRKAHILQWHSFLGPDDIA 235
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
K E + + + + + + + +M +AM L+A
Sbjct: 236 TLTKSPESLTPIELVKHAEFLRATGQK----ADAYVMALWRKVGGAIMTIAMILVAIPFI 291
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R ++ + G +Y I+ + G L P+ +++P ++ I+++ L
Sbjct: 292 FGSVREGLGGKLILAALM-GISIYLFDQIIANIGLVFQLNPIVVSVVPGMVLIAVAAHWL 350
Query: 356 LQK 358
L++
Sbjct: 351 LRR 353
>gi|319788013|ref|YP_004147488.1| permease YjgP/YjgQ family protein [Pseudoxanthomonas suwonensis
11-1]
gi|317466525|gb|ADV28257.1| permease YjgP/YjgQ family protein [Pseudoxanthomonas suwonensis
11-1]
Length = 366
Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 62/371 (16%), Positives = 128/371 (34%), Gaps = 32/371 (8%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L + L + L V+ L+ +G+ +Y + A VP I
Sbjct: 11 YIGRVVLASVLLTWAVLVGLDVVLALSGQLGDLGK-GSYDFPTALAVVAYSVPRRAYTIF 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P+ ++ +++ L TSEL RA+G+S +L +LL V+ +A G
Sbjct: 70 PYAAVIGSLLGLGQLAGTSELTALRALGLSRRRLSISVAAALVLLTGLMVVTGETLAPWG 129
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI--WEDFTSITID 185
++ L K+N W + + + G +++ + D +
Sbjct: 130 QRQADQLKLAAKNNNVAMARYSGLWAREGDTFLNAIDGQERVEGGQRVLELRDVRLYEVG 189
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-GRIPIDKNSTTLNIPIKMDGFQ-----K 239
++ ++ A L + + +L+ V + G +++ + ++D
Sbjct: 190 EEGEVRSLTRAGLVVHDANGWQLRDVRRVAFTGAGAVEETAEEQKWDSELDANALAAGVT 249
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
++ I+ + N E ++ PL ++A+ L A +
Sbjct: 250 RPRNLSASDLQASIEY----RRRNGLDARDYEDTYWSRWFYPLNVLALCLAAVPFAFGSL 305
Query: 300 RSNQPRIIVAYGI--FSGFMLYTIITIMKSFGK-------SGILLPVAAALIPVILTISL 350
RS + GI GFML + + G + L PV +
Sbjct: 306 RSGGMGKRLFLGIVFALGFML-LQMQFGRLAGAFRFDYRIAYALPPVL---------MLA 355
Query: 351 SILILLQKEDG 361
+ L +++ G
Sbjct: 356 TSWFLFRRKSG 366
>gi|194364316|ref|YP_002026926.1| permease YjgP/YjgQ family protein [Stenotrophomonas maltophilia
R551-3]
gi|194347120|gb|ACF50243.1| permease YjgP/YjgQ family protein [Stenotrophomonas maltophilia
R551-3]
Length = 368
Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 65/365 (17%), Positives = 119/365 (32%), Gaps = 18/365 (4%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + T L + L V+ + +G+ YS+ A VP
Sbjct: 11 YLGQSVFTTVLLTWTVLVGLDVVMAFSGEFKDIGKN-GYSLGHAAAWVLYTVPRRAYTFF 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P ++ ++ L TSEL RA+G+S +L + LL VL + G
Sbjct: 70 PTAAVIGALMGLGQLAATSELTALRALGLSRKRLSVSVAIALSLLTAVMVLSAETLGPWG 129
Query: 128 EKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPE-------NHIWEDF 179
+ L K D + W + + D F+ A + I D
Sbjct: 130 QDRADALKSSAKWGQDISTARYSGLWAR----EGDTFLSAAGGEEQLVGDKGTRLILRDV 185
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS-TTLNIPIKMDGFQ 238
I + +I A A ND L V +G + K+D
Sbjct: 186 RLYRIAEDGQIASLTHAATAEHDNDGWVLTGVRRDTFGERSATREEVAREPWNSKLDAGA 245
Query: 239 KFSE--QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + S E+ + + + N E ++ P+ ++A+ L A +
Sbjct: 246 LATGIAKPRNLSVAELRTSIEYRER-NGLDARDYEDVYWSRWFYPVNVLALCLAAVPFAF 304
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + GI + + + A +P I+ +++S +L
Sbjct: 305 GSLRSGGMGKRLFLGILFALGFWLLQLFFGRMAGALKFDYRIAYALPPIVMLAIS-GLLF 363
Query: 357 QKEDG 361
+++ G
Sbjct: 364 RRKSG 368
>gi|198274616|ref|ZP_03207148.1| hypothetical protein BACPLE_00768 [Bacteroides plebeius DSM 17135]
gi|198272063|gb|EDY96332.1| hypothetical protein BACPLE_00768 [Bacteroides plebeius DSM 17135]
Length = 391
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 59/360 (16%), Positives = 133/360 (36%), Gaps = 14/360 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY +L T + + + + V D+NE + + +P
Sbjct: 33 LKRLDRYIIVKFLGTYFFAIALIISIAVVFDINENIDDFINNKAPISAIIFDYYLNFIPY 92
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S +L+ P+++ + ++ + T ++
Sbjct: 93 YTNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRLMVPYMISAAIIALVTYVLST 152
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +G + Q +K+ K+++D + +Q+ + ++ N F+
Sbjct: 153 EVIPTGSVTRLKFEQVYKN---KKRADYVRNIQLEVDTG-VIAYMERYEDYNKTAYRFSL 208
Query: 182 ITIDKKNKII----HRKDADLAIIYNDKVKLKK--VVEYQYGRIPIDKNSTTLN-IPIKM 234
+ + R D ++ + +K + E + R I + + I ++
Sbjct: 209 DKFEDHKLVSHLTARRITYDTTTVH--RWIIKDYMIREMKGMRETITRGGRMDSIINMEP 266
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
F Q + + ++ + + + + E ++Y I +T+I S+
Sbjct: 267 QDFLITRGQQETMTSPQLREYIDKQKQRGFANIKVFEVEYYRRIATSFAAFILTVIGLSL 326
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S + R + + GI F TI +F +G P A IP IL + ++I +
Sbjct: 327 SSQK-RKGGMGLHLGIGIGLSFSYILFQTISSTFAINGNAHPNLAVWIPNILYLFIAIYL 385
>gi|307824319|ref|ZP_07654545.1| permease YjgP/YjgQ family protein [Methylobacter tundripaludum
SV96]
gi|307734699|gb|EFO05550.1| permease YjgP/YjgQ family protein [Methylobacter tundripaludum
SV96]
Length = 357
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 65/358 (18%), Positives = 145/358 (40%), Gaps = 12/358 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L Y + LK +L L + L + ++ +G+ +Y ++ A P +
Sbjct: 2 NVLTGYIVREILKGSLVATLLLLTLFNLFTFSDQLKDLGK-GHYGLTEIFYYLALTSPSV 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ ++ + + EL+ RA G+SI ++ ++ ++L + ++LV
Sbjct: 61 FYELMPASALLGSLFILGAMGNNRELIAMRAAGLSILGIIRAVMLAGLILVVVSILVGEF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKS-DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A E+ + D G + W++ + FI +K+ + + D +
Sbjct: 121 VAPVAERAAQMIKVNAVDEGRVVMNVKYGLWLR----EGKKFINVRKMQDDGN-LADISI 175
Query: 182 ITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQY---GRIPIDKNSTTLNIPIKMDGF 237
+D + ++ + A+ A+ N + KL+ + + ++N + D
Sbjct: 176 YELDDQRRLRYSIHAEKAVFQGNQQWKLEGIKQSGISIDQMTASNQNEQIWQSTVAPDLL 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S Y++ + F K N ++ E F+ +V PL+++ M L++A +
Sbjct: 236 DIVVVNAHDLSMYDLAMYVDFL-KDNHQKSHEFELAFWGRVVNPLVVLVMLLVSAPFVIG 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + G+ G I I+ G L P A+ P + ++L++ L
Sbjct: 295 VKRGINVGGRMMIGVVIGMGFNIIDKIVGHLGLIYDLNPPLMAVTPSLTVLALALFAL 352
>gi|172036161|ref|YP_001802662.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
gi|171697615|gb|ACB50596.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
Length = 401
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 47/372 (12%), Positives = 127/372 (34%), Gaps = 22/372 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY + L+ + +L I N + + + + +VP
Sbjct: 30 LMDRYLASQLIGPLLFSVGLVSVLGVAIGYLSDLADKVVDSNLPLIQASEILLLKVPEFT 89
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P ++ ++ + L+ SEL+ R G+S+++L+ P VV S+++ T LV +
Sbjct: 90 AYALPISVMLSTLLTYGRLSNDSELIAFRGCGVSLYRLIVPAVVMSLVVTGVTFLVSELV 149
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI-------SNPQQDIFIGAKKILP-ENHI 175
+ ++ ++ + + + ++ +
Sbjct: 150 VPAANYRATAILVEYLQEEHPYWQNKDIFYPDYEQVVLPNGEKEKRLKHLFFAEQFDGQN 209
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTL---NI 230
+ T + ++ ++ +D A + YQ K + +
Sbjct: 210 LKTLTVLEWLEE-RLNRIVVSDSATWNGQEETWDFFDGTIYQLAPDASYKEAYPFEHRQL 268
Query: 231 PIKMDGFQ-----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
P+ F+ + + + +K + + + + P + V
Sbjct: 269 PLTKAAFEFALQGRDPYEMNIIQARQYMKILKMMGDDKKLRM--FQVRIQQKLAFPFICV 326
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++ +++ + ++ + F Y + ++ S G G++ PV A +P I
Sbjct: 327 VFGVVGSALGSMPQQMSR-ATGFGLSVVIIFSYYLLGFLIGSLGLMGLISPVLAGWLPNI 385
Query: 346 LTISLSILILLQ 357
L +++ +L +
Sbjct: 386 LGLAMGGWLLYR 397
>gi|93004885|ref|YP_579322.1| permease YjgP/YjgQ [Psychrobacter cryohalolentis K5]
gi|92392563|gb|ABE73838.1| permease YjgP/YjgQ [Psychrobacter cryohalolentis K5]
Length = 408
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 53/387 (13%), Positives = 135/387 (34%), Gaps = 36/387 (9%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY L + ++G L V + + +Y++ R P
Sbjct: 27 LKVLSRYVKLNALLAIIAAVIGLWALQLVFSYLSELDSLD--GSYTMGEAIRYIFYRSPY 84
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++Q IP L+ +V L SELV+ RA GIS++++++ + +++ + + +
Sbjct: 85 FLEQFIPTGALLGAVVGLGLLANNSELVVMRAAGISVYRIVSWVLQPAMIFVVLALFINQ 144
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI----------SNPQQDIFIGAKKILP 171
+ ++ ++ + DN S W + P +
Sbjct: 145 FVLPYSNQLANEINSE--DNSSLVTSVRGYWTVQPRFENTKDGSAKPDGSDILYIDYADV 202
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYND----------------KVKLKKVVEYQ 215
+ +I + +D + A+ + +L + +
Sbjct: 203 KGNIGQ-VKRWHLDNNGNLQTAIHAEGGKYIGREALVTASSKPSEQYRYEWQLNNMTKLM 261
Query: 216 YGRIPID----KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE 271
+ + TL++P + + Q S ++ + F + E
Sbjct: 262 INQGFESSQAISPTDTLSLPFAPESVYLLTRQAEDLSLTQLYEHRQFMRQQGTRS-LSHE 320
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS 331
F+ ++ PL ++++ ++A S R++ + + + G + + ++ +
Sbjct: 321 LAFWQKLLSPLSILSLVIVACSFVFGSLRTHSLGLRIVVALLFGLLFSYVQDLVGFVSLA 380
Query: 332 GILLPVAAALIPVILTISLSILILLQK 358
P+ ++P+I + L +L ++
Sbjct: 381 TGFSPLMMVILPIIASALLGGYLLKRQ 407
>gi|325297714|ref|YP_004257631.1| permease YjgP/YjgQ family protein [Bacteroides salanitronis DSM
18170]
gi|324317267|gb|ADY35158.1| permease YjgP/YjgQ family protein [Bacteroides salanitronis DSM
18170]
Length = 371
Score = 146 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 59/363 (16%), Positives = 125/363 (34%), Gaps = 20/363 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY +L T + + + + V D+NE ++ + +P
Sbjct: 13 LKRLDRYIIVKFLGTYFFAIALIISISVVFDINENIDRFINNKAPLEAIVFDYYLNFIPY 72
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S +L+ P+++ + ++ T ++
Sbjct: 73 YTNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRLMVPYMISAAIISAVTFMLGT 132
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G + +++K + I + ++ N F+
Sbjct: 133 EVIPKGSVTRLKFEEKYKKKKSADYARNI----QLEVDSGVVAYMERYENYNKTGYRFSL 188
Query: 182 ITIDKKNKII----HRKDADLAIIYNDKVKLKKVVEYQY-GRIPIDKNSTTLNIPIKMDG 236
+ + R D A + K ++ + + G + ++ IKM+
Sbjct: 189 DKFEDHKLVSHLTARRITYDTASYH--KWIIRDYMIREMRGMKEVITRGERIDSIIKMEP 246
Query: 237 -----FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ E S E I+K +NI E +++ I + +T I
Sbjct: 247 QDFLITRGQQETMTSPQLREYIQKQKQRGFANI---KEFEVEYHRRIAMSFAAFILTAIG 303
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S + + + G+ F TI +F +G + P A IP IL + ++
Sbjct: 304 LSLSSRKVK-GGMGLHLGIGLALSFSYILFQTISATFAINGNMPPALAIWIPNILYLFIA 362
Query: 352 ILI 354
I +
Sbjct: 363 IYL 365
>gi|159903539|ref|YP_001550883.1| putative permease [Prochlorococcus marinus str. MIT 9211]
gi|159888715|gb|ABX08929.1| Predicted permease [Prochlorococcus marinus str. MIT 9211]
Length = 401
Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 53/371 (14%), Positives = 123/371 (33%), Gaps = 19/371 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRVP 60
+L R+ + L+ + ++ + + ++ Q+ E + + R+P
Sbjct: 29 LPLLDRWLLGELIPPLLFAISAFTVVSLSVGVMFDLVRQIVE-SGLPFNIAIQVFLLRIP 87
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P L+ ++ + L+ SEL R++G+S +++ P + ++L+ T +
Sbjct: 88 GFLVLSFPMAMLMATLLAYSRLSSNSELKALRSLGVSTKRMIAPAMALALLITSITFIFN 147
Query: 121 NPIATSGEKIGIDLIQ---------QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP 171
N I + ++Q Q ++ + I ++ ++ +
Sbjct: 148 NSIVPISNRNSEYILQNSLGKAISNQIGEDIIFSRKGRIDGLKDEKKRKSLTHLFYAGKI 207
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQY----GRIPIDKNS 225
+ + T + KK A+ A+ + S
Sbjct: 208 DKNKISKLTLLDFSKKG-YTQMIVANKALWNESKGIWDFIDGMMLTLSPTGNTTTTKFQS 266
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF-HNYRAETQFYFLIVIPLML 284
+ + + + E +K KS R + +P+
Sbjct: 267 YSYPLGTGPIKIGSIPKDANDMTVSEALKAEQLYLKSGNIKEARRMRVRIQEKFTLPMAC 326
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ LI +++ + S + +F + Y + S G SG L P AA PV
Sbjct: 327 IVFGLIGSTLGAKPSTTTSRSQGFGVSVFLILIYYVLSFSFSSLGVSGALTPFFAAWTPV 386
Query: 345 ILTISLSILIL 355
L+++ +L
Sbjct: 387 FLSLAGGAFLL 397
>gi|167585748|ref|ZP_02378136.1| permease YjgP/YjgQ family protein [Burkholderia ubonensis Bu]
Length = 382
Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 63/363 (17%), Positives = 121/363 (33%), Gaps = 35/363 (9%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L + + L I T L+ +
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEFVGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + Q W+ + + Q F+ + P++ I +
Sbjct: 125 ADQLSERVRLQALGASVSSNFQSGVWVKDTLAARDNGEQVTRFVNVGSLSPDSTI-SNVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQY------GRIPIDKNSTTLN---- 229
D K ++ + + A L V E + G P D +
Sbjct: 184 IYEFDSKFQLQNVRIAQTGRYEAPGHWLLTGVTETELTPIKPIGGQPADALNPVYRSQQV 243
Query: 230 -----------IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
P + E+ + + + I+ + + + R + + +
Sbjct: 244 TLPEFRLRSDLTPQILSVLLVSPERMSLINLFRYIQHLKENQQ----DTQRYDIALWRKL 299
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL-PV 337
+ P + M +++ + +R+ + V GI G + T+ G P+
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPAPL 359
Query: 338 AAA 340
AA
Sbjct: 360 TAA 362
>gi|270340118|ref|ZP_06007105.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270332630|gb|EFA43416.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 395
Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats.
Identities = 58/360 (16%), Positives = 124/360 (34%), Gaps = 18/360 (5%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y K ++ T ++ +L + + V D+NE + + + A VP
Sbjct: 41 YIIKKFIGTYIFSILLIISISIVFDVNENLAKFSQYHAPLEAIVFDYYANFVPYFANLFS 100
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
+ I L SE++ A G+S +LL P+++ +LL + + + G
Sbjct: 101 ALFVFISVIFFTSKLAGNSEIIAMLATGMSFKRLLRPYMITCVLLAGLSYYLSAYVIPHG 160
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
I + +K+ ++ + + + + F + K
Sbjct: 161 TVIRQNFETMYKNKHKNTSAENV----QLQVGRGVIAYIQHYDNTMKKGYGFCLDKFENK 216
Query: 188 NKI--IHRKDADLAIIYNDK--VKLKKVVEYQYGRIPI------DKNSTTLNIPIKMDGF 237
+ + + I + K KL + + +K+S + P +
Sbjct: 217 KLVSHLTAMEVQYDTISDSKYHWKLTNWKIRRLKGLREHITSGAEKDSVIMMEPTDLVYS 276
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ E F S + I K N+ + + +++ I +T+I AS+S
Sbjct: 277 KGQQETFTSPELKDYISKQIDRGSGNV---VQYQVEYHKRIASSFASFILTIIGASLSSR 333
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + G+ F + T+ +F + P+ AA IP I+ ++ +
Sbjct: 334 K-RKGGMGMYLGIGLALSFTYIMMQTVSATFAINAYFPPMLAAWIPNIVFAVIAFVCYRH 392
>gi|332292438|ref|YP_004431047.1| permease YjgP/YjgQ family protein [Krokinobacter diaphorus
4H-3-7-5]
gi|332170524|gb|AEE19779.1| permease YjgP/YjgQ family protein [Krokinobacter diaphorus
4H-3-7-5]
Length = 358
Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats.
Identities = 63/358 (17%), Positives = 126/358 (35%), Gaps = 11/358 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K Y+ T + L+ + + +++L E +++ A+
Sbjct: 2 KILDWYIVKRYIGTFVTMLVLFIPIGIIVNLAEKIDKILAN-EAPFGEVALYYLNFTIYF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P + I L +E++ + G+S ++ L P+++G+ ++ + +
Sbjct: 61 ANLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGVSFYRFLRPYLIGATIVCVGAFFLGTY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A K + I ++ K + + QI +I P +FT
Sbjct: 121 LAPRANKGYNEFIFEYLKKNKKDRETQNVYRQIDTGD---YIYVSSFTPRTKTGRNFTWE 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVK-----LKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ NK+ ++ A + KK + G I K MD
Sbjct: 178 HF-EGNKMTYKMSAIRIRYNEEDTTYTLNSFKKRTITENGDILESKAKLDTVFNFDMDDL 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ S E+ K ++ + R E +P+ +T+IA +VS
Sbjct: 237 TPVEYIAETLSTPELRKFIAKEKSRGSSYISRYEVTLQKRYSLPVAAYILTIIAVAVSA- 295
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R I +A+GI F+ + + + P+ A P IL L++ +L
Sbjct: 296 MKRRGGMGINLAFGIVLAFVFIFFDKVFGTLAEQSDFPPLVAVWTPNILFAILAVYLL 353
>gi|190572728|ref|YP_001970573.1| putative transmembrane permease [Stenotrophomonas maltophilia
K279a]
gi|190010650|emb|CAQ44259.1| putative transmembrane permease protein [Stenotrophomonas
maltophilia K279a]
Length = 368
Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats.
Identities = 64/365 (17%), Positives = 120/365 (32%), Gaps = 18/365 (4%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + T L + L V+ + +G+ Y++ A VP +
Sbjct: 11 YLGQSVFTTVLLTWAVLVGLDVVMAFSGEFKDIGKN-GYTLGHAAAWVLYTVPRRAYTMF 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P ++ ++ L TSEL RA+G+S +L + LL VL + G
Sbjct: 70 PTAAVIGALMGLGQLAATSELTALRALGLSRKRLSVSVAIALSLLTAVMVLSAETLGPWG 129
Query: 128 EKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPE-------NHIWEDF 179
+ L K D + W + + D F+ A + I D
Sbjct: 130 QDRADALKSSAKWGRDISTTRYSGLWAR----EGDTFLSAAGGEEQLVGDKGTRLILRDV 185
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS-TTLNIPIKMDGFQ 238
I + +I AD A D L V +G + K+D
Sbjct: 186 RLYRIAEDGRIASLTHADTAEHDRDGWVLTGVRRDTFGERSATREEVAREPWNSKLDAGA 245
Query: 239 KFSE--QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + S E+ + + + N E ++ P+ ++A+ L A +
Sbjct: 246 LATGIAKPRNLSVAELRTSIEYRER-NGLDARDYEDVYWSRWFYPVNVLALCLAAVPFAF 304
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + GI + + + A +P I+ +++S +L
Sbjct: 305 GSLRSGGMGKRLFLGILFALGFWLLQLFFGRMAGALKFDYRIAYALPPIVMLAIS-GLLF 363
Query: 357 QKEDG 361
+++ G
Sbjct: 364 RRKSG 368
>gi|228471152|ref|ZP_04055971.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
gi|228307092|gb|EEK16166.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
Length = 361
Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats.
Identities = 63/358 (17%), Positives = 135/358 (37%), Gaps = 11/358 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ + RY F +L T + ++ + + D+ E +++ + + A VP
Sbjct: 5 LISTVDRYIFIQFLATYFFSIVLILAVAIAFDVTEKLDRLLQPDVPLRAIIWDYYANFVP 64
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
P + I V L SE++ + G+S +LL P+++G+ ++ I T L+
Sbjct: 65 YYANLFSPLFVFIAVIYVTSRLAENSEIIAILSCGMSFRRLLKPYMLGAAVIAILTFLLS 124
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + G ++ ID ++ + ++ I + F+ E+ + F+
Sbjct: 125 SFVIPPGNRVRIDFQNRYIKDKRITYANAI----QMQVAPETFMFMSYYNDESKVGYTFS 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDG 236
+ K+ + R A+ I +L+ +G N IPI
Sbjct: 181 MDRFEGKD-LKSRVMANSIIYDTLYNWQLQDYTITYFGERQDTLFRGNQLDTIIPITPRD 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F + E+ + + + I + +TL+ S+S
Sbjct: 240 FLVTEGDVEMLTTPELYHSIQQQRMRGA-ATQLYAIELHKRIAMIPASFILTLMGVSLSA 298
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + +A G+ F+ +T+ SF +G + PV AA +P ++ + +S ++
Sbjct: 299 RK-RKGGMGLALAVGLSLSFIYILFMTVTASFAVTGAMAPVVAAWLPNLVYLGISFVL 355
>gi|307566072|ref|ZP_07628530.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
gi|307345260|gb|EFN90639.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
Length = 427
Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats.
Identities = 60/366 (16%), Positives = 128/366 (34%), Gaps = 18/366 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G L Y K ++ T L+ +L + + V D NE ++ + + A +P
Sbjct: 67 IGRLDWYIIKKFIGTYLFAILLIISISIVFDFNENLSKFTQYHAPWRAIIFDYYANFIPY 126
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ A G+S +L+ P+++ I++ T + +
Sbjct: 127 YSNLFSPLFVFIAVIFFTSKLASNSEIIAMLAAGVSFKRLMRPYMISCIVISALTFYLNS 186
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G I + +++N ++ + ++ + F+
Sbjct: 187 FVIPHGTVIRQNFESLYRNNKKNTSAENV----QLKVAKNTVAYIQYFDDHYKRGYGFSL 242
Query: 182 ITIDKKNKIIH----RKDADLAIIYNDKVKLKKVVEYQYGRIPI------DKNSTTLNIP 231
+ K + H D K+ Q + +K++ L P
Sbjct: 243 AKFENKKLVSHMTAMEIQYDTVADTKYHWKVSNYKIRQLKGLKEHITTGDEKDTILLMEP 302
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + E F S E++ +S N + + + E +F+ I + +T+I
Sbjct: 303 TDLVYSKGQQETFTSP---ELLNYISKQNSRGLSNVVQYEVEFHKRIAMSFSAFILTIIG 359
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S R + + G+ F + T+ +F P+ AA IP + + ++
Sbjct: 360 LSLSARK-RKGGMGLYLGIGLGLSFSYILLQTVSATFAIKANTPPILAAWIPNFIFVFIA 418
Query: 352 ILILLQ 357
Sbjct: 419 YFCYKH 424
>gi|118581151|ref|YP_902401.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
gi|118503861|gb|ABL00344.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
Length = 354
Score = 145 bits (367), Expect = 8e-33, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 123/360 (34%), Gaps = 13/360 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY + + L L L+ +L + + +G+ Y +S + + +P
Sbjct: 2 KIIDRYLGRSFASCWLSVNLILAGLLSFFELAKQLDDIGK-GRYDVSDALLYVSLTLPGR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ P L+ +I+ L + EL RA GIS+ ++ F+ ++L + +L
Sbjct: 61 MLEMAPPSALLGSIIALGLLAKNQELTALRAGGISVQRIGWTFMKPAVLTLLVLLLGAQF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + E+ + W + + FI + D
Sbjct: 121 IIPTLEQTAWTRRETALSKSGTLLPRGGFWTR----DERRFINLRTARDNGVQAVDI--Y 174
Query: 183 TIDKKNKIIHRKDADLAIIY-NDKVKLKKVVE---YQYGRIPIDKNSTTLNIPIKMDGFQ 238
D ++ + I N +L V+ + G L +
Sbjct: 175 EFDNRDALTGYIHGRETRIGANGNWELHHVLRKEITEQGDSVRALPRLVLPHLLTPQQTA 234
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S E+ +S K + R + + +P++ AM +++ +
Sbjct: 235 ALTLPPQTLSISELSGTISNLQKREQ-NAGRYLLALWQKLTLPVITAAMIMLSLPLVCRP 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+RS + G G + + + I+ G + P L P + + IL ++
Sbjct: 294 ARSASLGWHIMIGAIFGVVFFYLNQILGYTGLILQVSPFWTTLFPAL-AVLAGGAILTRR 352
>gi|237710072|ref|ZP_04540553.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|229456165|gb|EEO61886.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 365
Score = 145 bits (367), Expect = 8e-33, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 123/359 (34%), Gaps = 18/359 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K +L T + + + + V D+NE ++ + +P
Sbjct: 10 LDIYIIKKFLGTYFFAIALIISIAVVFDVNENIDRFINNKAPLKAIVFDYYMNFIPYFSN 69
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
P + I L SE++ + G+S +++ P+++ + ++ + T + +
Sbjct: 70 LFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIISVVTFGLGAYVI 129
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G +D ++K ++ + + ++ N F+
Sbjct: 130 PKGNVTRLDFEDRYKKKKKQEYVRNV----QLEVDSGVIAYIERYENYNKTGYRFSLDKF 185
Query: 185 DKKNKIIHRKDADLAIIYN---DKVKLKKVVEYQYGRIPID-KNSTTLNIPIKMDG---- 236
D K K++ A K +K + + + L+ IKM+
Sbjct: 186 DDK-KLVAHLTARSVTYDTASVHKWTIKNYMIREMEGMREKITRGDRLDTIIKMEPQDFL 244
Query: 237 -FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + S E I K +NI E ++Y I + +T I S+S
Sbjct: 245 IMKGQQQTMTSPELKEYIDKQKRRGFANI---KEFEIEYYQRIAMSFAAFILTTIGVSLS 301
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + G+ F T+ +F +G P+ A IP IL ++I +
Sbjct: 302 SRKMK-GGMGLHLGVGLALSFSYILFQTVSATFAVNGNTPPIIAVWIPNILYTFIAIYL 359
>gi|281422528|ref|ZP_06253527.1| putative membrane protein [Prevotella copri DSM 18205]
gi|281403352|gb|EFB34032.1| putative membrane protein [Prevotella copri DSM 18205]
Length = 413
Score = 145 bits (367), Expect = 9e-33, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 116/359 (32%), Gaps = 18/359 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K +L + + + + V D NE ++ E + + A VP
Sbjct: 56 LDWYIIKKFLGYYFFSIALIISIAIVFDFNENLSKFTEHHAPARAIIFDYYANFVPYFAN 115
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
V I+ L SE++ A G+S +LL P+++ +LL + + +
Sbjct: 116 LFSALFVFVAVILFTTKLASNSEIIAILASGVSFKRLLRPYMITCVLLSALSFGLSAYVI 175
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G I + +K+ ++ + + + + F
Sbjct: 176 PHGTVIRQNFETMYKNKKKNTSAENV----QLQVDKGVIAYMQHYDNSMKRGYGFCLDKF 231
Query: 185 DKKNKI--IHRKDADLAIIYNDK--VKLKKVVEYQYGRIPI------DKNSTTLNIPIKM 234
K + + D I + K KL + + K++ + P +
Sbjct: 232 QDKKLVSHLTAMDIQYDTISDSKYHWKLSNWKIRKLQGMKEHITSGAQKDTIIMMEPTDL 291
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ E F S + I K N+ + E +++ I +T+I S+
Sbjct: 292 VYSKGQQETFTSPELRDYISKQINRGSGNV---VQYEVEYHKRIASSFASFILTIIGVSL 348
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S R + G+ F + T+ +F V AA +P L ++
Sbjct: 349 SARK-RKGGMGAALGVGLALSFGYIMLQTVSATFAIQANFPSVLAAWLPNFLFAIVAYF 406
>gi|298206762|ref|YP_003714941.1| hypothetical protein CA2559_00860 [Croceibacter atlanticus
HTCC2559]
gi|83849393|gb|EAP87261.1| hypothetical protein CA2559_00860 [Croceibacter atlanticus
HTCC2559]
Length = 359
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 63/358 (17%), Positives = 127/358 (35%), Gaps = 10/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K YL T + LL + + ++L E +++ + A
Sbjct: 2 KILDWYILKRYLGTFVTLLLLFIPIGITVNLAEKIDKILAN-DVPFIEVAEYYLNFTIYF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P + I L +E++ + G+S ++ L P+++G+ ++ + +++
Sbjct: 61 ANLLFPLFLFLSVIWFTSKLANNTEIIAFLSSGVSFYRFLRPYLIGATIVCLLALIMGMY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A S K + + +G + + + N + I A P +FT
Sbjct: 121 LAPSASKGFNEFKYTYLKSGGDNQQETKNVYRQINEDE--VIYATNFNPSRQSALNFTLE 178
Query: 183 TIDKKNKIIHRKDADLAII--YNDKVKLKKV---VEYQYGRIPIDKNSTTLNIPIKMDGF 237
K N + ++ A + L + G I +P + D
Sbjct: 179 HF-KDNVLEYKISASRLQYNKEDTTYTLTNFNKRLVGARGDSLIHYRKLDTILPFEFDEL 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + +F E+ K + + + R Y P+ +T+IA +VS
Sbjct: 238 TPNSYVAETLNFNELNKFIEDEKRRGSGNLNRYLVVAYKRWSTPVSAYILTIIAVAVSA- 296
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R I +A GI F + ++ + + P+ A P + L+I +L
Sbjct: 297 MKRRGGMGINLAIGIAVAFSFVFLDKVLGTIAEQSDFSPLVAVWFPNVSFGILAIYLL 354
>gi|313203772|ref|YP_004042429.1| permease yjgp/yjgq family protein [Paludibacter propionicigenes
WB4]
gi|312443088|gb|ADQ79444.1| permease YjgP/YjgQ family protein [Paludibacter propionicigenes
WB4]
Length = 367
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 49/357 (13%), Positives = 126/357 (35%), Gaps = 10/357 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ Y K +L T + ++ + + V D+ E + + +P
Sbjct: 11 LKRIDTYIIKKFLGTYFFSIVLILSISVVFDITEKLDNFVSHNAPLKAIVLDYYLNFIPF 70
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P T + I + +E++ + G+S +L+ P+++ + ++ + +
Sbjct: 71 YMNMFSPLFTFIAVIFFTSKMATNTEIIAILSSGVSFRRLMLPYMISAAVIATISFTLGG 130
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G K +D ++ + + + + + + + N+ F+
Sbjct: 131 FVIPHGTKKMLDFEDKYVRQIKQSNATNL----QMEVAKGVIMYIGRFEVSNNTGYQFSL 186
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGF 237
+ K + R A+ + K+ ++ + + S I ++ + F
Sbjct: 187 EKFEGK-TLASRLTAETITWDSLYSWKISNYLQRDFNGMREQITKGISKDTTIMVQPEEF 245
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S ++ + + + + E +Y +PL MTLI S+S
Sbjct: 246 YITAAEAPQMSIVKLGSYLKRQRERGVGNIKLFEDDYYKRFSMPLAAFIMTLIGVSLSSR 305
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + G+ + + SF +G + AA IP ++ + + I +
Sbjct: 306 KVR-GGMGLHLGVGLALSAIYILFSAMSTSFSVNGSMSAFAAVWIPNVVFLLVGIYL 361
>gi|110637606|ref|YP_677813.1| permease [Cytophaga hutchinsonii ATCC 33406]
gi|110280287|gb|ABG58473.1| conserved hypothetical protein; possible permease [Cytophaga
hutchinsonii ATCC 33406]
Length = 359
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 139/359 (38%), Gaps = 12/359 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K +L T + +L M+++ VID+ E + +P +
Sbjct: 4 LDLYIIKKFLVTYFFVVLMFMLVITVIDITEKMEDFMKHKLSIWFILVEYYFAFIPYMAN 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ P + I V NL +E++ + G+S+ +++ P+++GSIL+ + +
Sbjct: 64 LLSPITIFIATIFVTANLAARTEIIAMLSSGMSLTRIMYPYLIGSILIAFMVFYMSGWLI 123
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G K +D +++ + + + ++ + E ++ FT TI
Sbjct: 124 PHGNKKRVDFEKKYIKSTFFYEGRNVHMKTAPT----TYVYIESYNSEINVGYQFTLETI 179
Query: 185 DKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMDGFQ 238
N+++ + A + K ++++ ++ ++ + I F+
Sbjct: 180 I-DNRLVSKLKAARMNWNDSTKKWRMEEYFIRRFTEDGKEEVFKGRGLDTALTITPKDFE 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
F + E+ +++ + T+ Y P ++ +TLI S
Sbjct: 239 DTYMLFETYDMGELNNQIALLEARGSENISTYITEKYQRYTYPFSVIILTLIGVIASSRK 298
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
SR + +A+G F+ + +S G + P+ A+ IP I+ I + +++ +
Sbjct: 299 SREG-AGLTIAFGFLLAFVYIIFMITSRSLANVGGIGPLFASWIPNIVFIVIGLIMYRR 356
>gi|220916597|ref|YP_002491901.1| permease YjgP/YjgQ family protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219954451|gb|ACL64835.1| permease YjgP/YjgQ family protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 360
Score = 144 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 52/357 (14%), Positives = 121/357 (33%), Gaps = 15/357 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL+RY + L L L G + + +D + + L A + ++
Sbjct: 2 ILFRYVARRMLGAFLVALTGVVGIYLAVDFVDNASAYTGAGWLPA--VLQLYAYKAAGVV 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P ++ + +T E RA+G+ W+L P + ++L G V++ + +
Sbjct: 60 YMVAPAALILGAGIATSMFRQTREYTAMRAVGLGPWRLAVPVLAVTLLAGGVLVVLNDLV 119
Query: 124 ATSGEKIGIDLIQQWKDNGD-----KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ ++ G + W + + LP+ +E
Sbjct: 120 GVQAAERAEEITAHRFARGGNLRRFLAAREPKRWFR--GMDGKRVYHLRGNLPDGG-FER 176
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP----IDKNSTTLNIPIKM 234
T + + + R DA L+ V + + + +
Sbjct: 177 VTVYELGEGFTLARRIDAARMHPDGRAWILEDVEDRTFRQDGSMGLERADRKRYAFDEPP 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D F + + + +I+++ K + + Y + PL + L+A ++
Sbjct: 237 DAFAVIAGKPDQMRWNTLIRQIGI-RKRLGQPVTEFQLERYDRLAYPLAGIPGALLALAL 295
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+L R + + + + + + + G SG + P A+ P ++ ++L
Sbjct: 296 ALRRDRKGHLAAALLEAVGVTLLFWGMQGVSSALGLSGRVAPWIASWAPNVVFLALG 352
>gi|88808511|ref|ZP_01124021.1| possible permease [Synechococcus sp. WH 7805]
gi|88787499|gb|EAR18656.1| possible permease [Synechococcus sp. WH 7805]
Length = 388
Score = 144 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 46/371 (12%), Positives = 120/371 (32%), Gaps = 20/371 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L R+ L L+ + ++ + + + + + R+P
Sbjct: 16 IPLLDRWLLGELLGPLLFAVAAFTVVSLSVGVMFELVRQIVESGLPVGIAVQVLLQRLPS 75
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P TL+ +++ + L+ SEL R++G++ +++ P ++ ++++ T + +
Sbjct: 76 FLVISFPMATLMASLLAYSRLSANSELTALRSVGVTATRMIVPALILALVMSGLTFIFND 135
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI----------FIGAKKILP 171
+ + + + + Q+ A+K
Sbjct: 136 ALVPRANRSAETTLARALGKAIATEKGTNIVYSRFGRLQETDGTSNKGLAQLFYARKFRD 195
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQY----GRIPIDKNS 225
+ + T + + AD A+ + + D +
Sbjct: 196 G--VMNEVTVLDFTRAG-FTQMLVADRAVWNESQAKWQFFDGQILTLTPSGSTTSADFDQ 252
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN-IFHNYRAETQFYFLIVIPLML 284
+ K + + + E ++ ++ I R E + +P+
Sbjct: 253 YLYPLSAAPIRIAKLPKDANNMTVVEALQAKDLLQQAGDIKEARRLEVRIQEKFTLPMAC 312
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ LI AS+ + + + + Y + S G G L P+ AA PV
Sbjct: 313 LVFGLIGASLGAKPNNRTSRSQGFGISVVLILVYYVLSFSFSSLGVKGTLPPLLAAWSPV 372
Query: 345 ILTISLSILIL 355
+++++ +L
Sbjct: 373 LISLAGGGFLL 383
>gi|325279695|ref|YP_004252237.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
20712]
gi|324311504|gb|ADY32057.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
20712]
Length = 359
Score = 144 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 62/366 (16%), Positives = 124/366 (33%), Gaps = 32/366 (8%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y + +L T + L+ + +V V DL+E + E + +P
Sbjct: 4 LDLYIIRKFLGTFFFSLVLILCIVVVFDLSEKLEKFLENEAPVKAIVFDYYKNFIPYFAN 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
T + I + SE++ + GIS + L P+++ + ++ I + L+ I
Sbjct: 64 VFSSLFTFISVIFFTSKMAYDSEIIAILSTGISFRRFLFPYLMSATVIAILSFLLGAFII 123
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + I+ +Q+ G + + + P +I +++ DF+
Sbjct: 124 PNANEKRIEFEKQYM--GKRYANKEQNIHRQIAPG--TYIYMSSYSVASNVGYDFSIENF 179
Query: 185 DKKNKI----IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF--- 237
+ R D N K + + I+ + T K+D
Sbjct: 180 RGDTLVNKLTSSRITWDK---ENKKWVIHNWKLRE-----IEGDKETYTTGQKLDTVMAF 231
Query: 238 ---------QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+K EQ I +M SN+ + + Y +I +T
Sbjct: 232 QPSEFSENPKKIREQLTFPELDRYIDRMKMRGSSNVIE---FQIEKYKMIANAFATFILT 288
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
I S+S R + + G+ F + F +G + P+ A +P IL
Sbjct: 289 FIGVSISSRKIR-GGMGLHLGIGLLISFSYILFMQFSTVFATNGNMNPLLAVWLPNILFA 347
Query: 349 SLSILI 354
+ + +
Sbjct: 348 IIGVFV 353
>gi|116327483|ref|YP_797203.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
gi|116331903|ref|YP_801621.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
gi|116120227|gb|ABJ78270.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
gi|116125592|gb|ABJ76863.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
Length = 386
Score = 144 bits (365), Expect = 2e-32, Method: Composition-based stats.
Identities = 54/367 (14%), Positives = 123/367 (33%), Gaps = 17/367 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY F + K + ++ ++ + +N+ A+ +P
Sbjct: 25 LKILDRYLFGEFFKVFIGTVVLLTGIMLLSLVNDNMRNFTT-TKAPRYHVALFLVYSLPK 83
Query: 62 IIQQII-PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
II + + + ELV A G+S ++++ P ++ IL+ I + V
Sbjct: 84 IISTTVVSMSLMFSICFTVGQFSVNKELVSMMAAGVSFFRIVAPLILFGILMWIVMLFVT 143
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE-NHIWEDF 179
I K+ + G ++ + + + F P + I F
Sbjct: 144 ELIVRPVNKLA-KIEHDILTEGMGTLANSVYQFHVKGKEG--FYYLYFYDPNKDEINGGF 200
Query: 180 TSITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGRI-----PIDKNSTTLNIPI 232
I + + A K+KKV E+ + +P
Sbjct: 201 NYIRLRNDGSPETVISSLKAKYNYETKLWKMKKVEEWHFDNDLKLSSQESFEEKEYELPE 260
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
F+ + + +++ ++ + + + T+ + + +P+M + +TLI
Sbjct: 261 DPTYFKIPAGSVEEMNLFQLKEEEKRRIQKGLSYGDVL-TEKHSVFALPMMTIIVTLIGT 319
Query: 293 SVSLEFSRSNQPR-IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
++ + + G+ + Y + KS G++G++ P I L + L
Sbjct: 320 IAGYFTKKTAGVASLGITIGVVL--IYYIFNSAGKSLGENGVIPPFVGVWITPSLFLGLC 377
Query: 352 ILILLQK 358
+ +
Sbjct: 378 FWMFRRM 384
>gi|126696921|ref|YP_001091807.1| putative permease [Prochlorococcus marinus str. MIT 9301]
gi|126543964|gb|ABO18206.1| possible permease [Prochlorococcus marinus str. MIT 9301]
Length = 401
Score = 144 bits (365), Expect = 2e-32, Method: Composition-based stats.
Identities = 50/378 (13%), Positives = 132/378 (34%), Gaps = 23/378 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRV 59
+ ++ R+ + ++ + ++ + + ++ ++ E + + +
Sbjct: 22 LLPLIDRWLLGQIIPPMIFAISAFTVISLSVGVMFDLIRKIVEF-GLPLFLALKVLFFSL 80
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + P L+ ++ + L+ SEL+ +++GI ++++P + SI + T
Sbjct: 81 PSFLVLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIISPAIALSIFMTGLTFYF 140
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQ-----DIFIGAKK 168
+ + + K+ ++ + + M +IS+ + + F+
Sbjct: 141 NDNLVPASNKLAEKTLRAGIGSSFSAEQRKDNIMFSRYGSRISSSNKKPTKTNTFLTHIF 200
Query: 169 ILP--ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKV----VEYQYGRIP 220
EN+I E T + +++ A + ++
Sbjct: 201 YASWYENNIMEGVTVLDFSRED-FQQILKAKNGVFDKKSSSWIFSDGNIVSIDPSGQTTN 259
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN-YRAETQFYFLIV 279
I T K + + + I+ K+ R + +
Sbjct: 260 IQFQEYTYPFVEGPMELAKVPKDANEMTLKQAIQAEKIYEKTGNLKEIRRIKVRIQEKFT 319
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
+P + LI +S+ + + + + + Y + + SFG GIL P+ A
Sbjct: 320 LPFACLVFGLIGSSLGSKSNLRSSKSQGFGLSVILILIYYVMSFLFSSFGVKGILPPIFA 379
Query: 340 ALIPVILTISLSILILLQ 357
A +PV++++ I +L +
Sbjct: 380 AWLPVLISLGGGIYLLRR 397
>gi|319954060|ref|YP_004165327.1| permease yjgp/yjgq family protein [Cellulophaga algicola DSM 14237]
gi|319422720|gb|ADV49829.1| permease YjgP/YjgQ family protein [Cellulophaga algicola DSM 14237]
Length = 359
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 68/357 (19%), Positives = 145/357 (40%), Gaps = 10/357 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K YL T LL + + ++ L+E N+M + ++ + I
Sbjct: 3 ILDKYILKRYLVTFSVMLLLFIPIGIMVHLSEQYNKMQDN-EAPLNEILMYLGNFSIYIG 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + I L +E+V + GIS + L P+++G++++ F +L+ I
Sbjct: 62 SMLLPIFLFLSVIFFTSKLAGNTEIVAMLSSGISYGRFLRPYLMGAVIVAAFMLLMGMFI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ K + ++ G + + + Q++ FI + P I +F+
Sbjct: 122 VPNASKGFNEFKFKYLKKGKQDRVTENIFNQLNAND---FIYVSRFDPTRDIGYNFSMEH 178
Query: 184 IDKKNKIIHRKDAD--LAIIYNDKVKLKK-VVEYQYGRIPIDKNSTTLNI--PIKMDGFQ 238
+K N + ++ A I + +L V G I + L+ P K++
Sbjct: 179 FNKDNVLEYKLSAANIRWIEADSIYRLTSYVKRTLKGDTEILETKRRLDTVFPFKINDLT 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S +++ +E+ + ++ + + Y +P+ +TLIA +VS +
Sbjct: 239 PVSYVAETKNLFELNEFIANEKRKGASNINTYILVKYKRWTMPITAFILTLIAVAVSSQK 298
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + +A+GI F+ + + + P+ A ++P +L L+ +L
Sbjct: 299 -RRGGMGVNLAFGILVAFVYIFFDRVFGTLAEQSGFSPLLAVIVPNVLFGFLAFYLL 354
>gi|300900316|ref|ZP_07118495.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|300356206|gb|EFJ72076.1| conserved hypothetical protein [Escherichia coli MS 198-1]
Length = 315
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 50/323 (15%), Positives = 115/323 (35%), Gaps = 18/323 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDK----NSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFM 317
+ RS +A G+ G +
Sbjct: 292 TFSAPRSPGMGSRLAVGVIVGLL 314
>gi|163756243|ref|ZP_02163358.1| hypothetical protein KAOT1_06887 [Kordia algicida OT-1]
gi|161323855|gb|EDP95189.1| hypothetical protein KAOT1_06887 [Kordia algicida OT-1]
Length = 359
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 135/358 (37%), Gaps = 10/358 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K YL T LL + + ++D++E ++M + V
Sbjct: 2 KILDWYIIKKYLLTFSVMLLLFVPIGIMVDISENIDKMLA-SKAPTDEIVLYYVNFVIYF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P + I L +E++ + G+S + L PF+V + ++ I ++
Sbjct: 61 ANLLFPIFLFLSVIWFTSKLANDTEIIAILSSGVSYLRFLRPFLVAASIVAIVAFVMGMY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + K + ++ G K+ D + + FI K ++ ++FT
Sbjct: 121 IVPNASKGFNEFRFEYIKKGRKKVRDNLEIYKQVTEND--FIYLKSFSFDSKRGDNFTLE 178
Query: 183 TIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGF 237
+ N + ++ A + L+ + G + +++ P ++D
Sbjct: 179 HF-EDNVLEYKIQARSIKYNEDDSTYTLRGFKKRIVGAMNDSLVNQRKFDTIFPFEVDDL 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + ++ E+ K ++ +S + + Y +P+ +T+IA +VS
Sbjct: 238 TPVTYMAETLNYQELDKFIAKEKQSGSPNVNKHLLVKYKRWSLPITAFILTIIAVAVS-S 296
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R +A+GI F+ I + + P+ A +P ++ L++ +L
Sbjct: 297 MKRRGGMGFNLAFGIAIAFIYIFFDKIFGTMAEKSGFSPMLAVWVPNLVFGVLALYLL 354
>gi|86158886|ref|YP_465671.1| permease YjgP/YjgQ [Anaeromyxobacter dehalogenans 2CP-C]
gi|85775397|gb|ABC82234.1| permease YjgP/YjgQ [Anaeromyxobacter dehalogenans 2CP-C]
Length = 360
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 52/357 (14%), Positives = 122/357 (34%), Gaps = 15/357 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL+RY + L L L G + + +D + L A + ++
Sbjct: 2 ILFRYVARRMLGAFLVALAGVVGIYLAVDFVDNAAAYTGAGWLPA--VLQLYAYKAAGVV 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P ++ + +T E RA+G+ W+L P + ++L G V++ + +
Sbjct: 60 YMVAPAALILGAGIATSMFRQTREYTAMRAVGLGPWRLAVPVLAVTLLAGGVLVVLNDVV 119
Query: 124 ATSGEKIGIDLIQQWKDNGD-----KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ ++ G + W + + LP+ +E
Sbjct: 120 GVQAAERAEEITAHRFARGGNLRRFLAAREPKRWFR--GVDGKRVYHLRGNLPDGG-FER 176
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GRIPIDKNS-TTLNIPIKM 234
T + + + R DA L+ V + + G + +++
Sbjct: 177 VTVYELSEAFTLARRIDAARMHPDGRAWILEDVEDRTFRPDGSMALERAERKRYAFDEPP 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D F + + + +I+++ K + + Y + P + L+A ++
Sbjct: 237 DAFAVIAGKPDQMRWSTLIRQIGI-RKRLGQPVTEFQLERYDRLAYPFAGIPGALLALAL 295
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+L R + + + + + + + G SG + P A+ P ++ ++L
Sbjct: 296 ALRRDRKGHLSAALLEAVGVTLLFWGMQGVSSALGLSGRVAPWVASWAPNVVFLALG 352
>gi|307718797|ref|YP_003874329.1| permease YjgP/YjgQ family protein [Spirochaeta thermophila DSM
6192]
gi|306532522|gb|ADN02056.1| permease YjgP/YjgQ family protein [Spirochaeta thermophila DSM
6192]
Length = 361
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 61/361 (16%), Positives = 133/361 (36%), Gaps = 13/361 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ R+ ++L L LL + ++ +IDL + + + + L +P +
Sbjct: 3 VITRFALSWFLPLFLAALLSFVTILELIDLFTNLVAYID-ADLTTFQILHLQLLYLPKCV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P TL +L+ ++EL+ GIS+++ + PFVV +L + +
Sbjct: 62 TYSLPIATLFAVAFSLGSLHASNELIALFGAGISLYRFVLPFVVCGLLFSGAYFFIEELL 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A +L+ + + + + + + + ++ +H
Sbjct: 122 AIPSLTQKQELMAILMGRTSPTQ---VVNVTLVGEENRLVVHTRRYDDRSHTITRVLVYE 178
Query: 184 IDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPI-----KMDG 236
D++ + R +A+ D+ L++V Y K + + + +
Sbjct: 179 KDEEGEFASRIEAERGTWDPDQREWVLQRVRRYIRDEEGNLKEESFEKLRTDLGEIQPED 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F + + E + + ++ + + T +Y I + L+A SV+
Sbjct: 239 FLQTRHSIDKMTLAEAGRWIQTLKRAGLPYREAL-TDYYKRISFAFTSFIVALLATSVAG 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
F +N + + + G Y + F K G L PV A +PV++ S SIL
Sbjct: 298 RFK-ANALLLSLLLSLSIGVSYYVFQMVTTLFAKLGYLPPVVGAWLPVLVFFSGSILFFK 356
Query: 357 Q 357
Sbjct: 357 Y 357
>gi|87302818|ref|ZP_01085629.1| possible permease [Synechococcus sp. WH 5701]
gi|87282701|gb|EAQ74659.1| possible permease [Synechococcus sp. WH 5701]
Length = 401
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 127/361 (35%), Gaps = 20/361 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLN-EIQNQMGELPNYSISRGAVLAATRVP 60
++ R+ + L+ + + + + E+ ++ E + + R+P
Sbjct: 27 LPLMDRWLTNELMGPLLFGVAAFTAVSLSVGVVFELVRRVAE-SGLPLLTALQVLGLRMP 85
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P TL+ ++ + L+ SEL+ R++G+S W+++ P ++ ++L+ + T +
Sbjct: 86 GFLVLSFPMATLMATLLAYSTLSSNSELIALRSVGVSTWRMVLPALIVAVLMSLLTFVFN 145
Query: 121 NPIATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE------ 172
+ I S + + Q K ++ S+II P + G+++ L +
Sbjct: 146 DLIVPSANLEATNTLNQALGKAIAAEKGSNIIYSRFSRRPSKLDESGSERYLSQLFYSRQ 205
Query: 173 --NHIWEDFTSITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYG----RIPIDKN 224
+ E+ T + + + A + + + G +
Sbjct: 206 FKDGEMEEVTVLDFSRPSG-TQILKAKTGTWNDEAGMWEFRDGQIVLVGDSETTTSAKFD 264
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN-IFHNYRAETQFYFLIVIPLM 283
+ + AS S E ++ + ++ R + P +
Sbjct: 265 RYLYPLDQGPLKLAALPKDAASMSVSEALRAETLLREAGDQKEARRLRVRIQEKFAFPAI 324
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ LI +S+ + + + F Y + I S G G L PV AA P
Sbjct: 325 CLVFGLIGSSLGVRPNARTSRSQGFGISVLLIFSYYLMSFIFSSLGVKGTLGPVLAAWSP 384
Query: 344 V 344
V
Sbjct: 385 V 385
>gi|123969132|ref|YP_001009990.1| putative permease [Prochlorococcus marinus str. AS9601]
gi|123199242|gb|ABM70883.1| possible permease [Prochlorococcus marinus str. AS9601]
Length = 401
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 49/375 (13%), Positives = 129/375 (34%), Gaps = 23/375 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRVP 60
++ R+ + L+ + ++ + + ++ ++ E + + +P
Sbjct: 23 IPLIDRWLLGQIIPPMLFAISAFTVISLSVGVMFDLIRKIVEY-GLPLFLALKVLFFSLP 81
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P L+ ++ + L+ SEL+ +++GI ++++P + SI + T
Sbjct: 82 SFLVLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIISPAIALSIFMTGLTFYFN 141
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILP--- 171
+ + K+ ++ + ++ M +I++ + K+
Sbjct: 142 DNLVPKSNKLAETTLRAGIGSSFSEEKGKENIMFSRYGSRINSETKKPTKNNSKLTHIFY 201
Query: 172 ----ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKV----VEYQYGRIPI 221
EN I ++ T + +++ A+ ++ I
Sbjct: 202 SQWYENKIMKNVTVLDFSRED-FQQILKANSGRFDKKSSSWIFSNGSIVSIDSGGQTTNI 260
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN-IFHNYRAETQFYFLIVI 280
K + + + I+ K+ + R + + +
Sbjct: 261 QFKEYKYPFVEGPMELAKVPKDANEMTLKQAIQAEKIYKKTGNLKEVRRMKVRIQEKFTL 320
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
P + LI +S+ + + + + + Y + I SFG GIL P+ AA
Sbjct: 321 PFACLVFGLIGSSLGSKSNLRSSKSQGFGLSVILILIYYVMSFIFSSFGVKGILPPIFAA 380
Query: 341 LIPVILTISLSILIL 355
+PV++++ I +L
Sbjct: 381 WLPVLISLGGGIYLL 395
>gi|254521231|ref|ZP_05133286.1| putative YjgP/YjgQ family permease [Stenotrophomonas sp. SKA14]
gi|219718822|gb|EED37347.1| putative YjgP/YjgQ family permease [Stenotrophomonas sp. SKA14]
Length = 363
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 62/365 (16%), Positives = 116/365 (31%), Gaps = 18/365 (4%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + T L + L V+ + +G+ Y++ A VP +
Sbjct: 6 YLGRTVFTTVLLTWAVLVGLDVVMAFSGEFKDIGKN-GYTLGHAAAWVLYTVPRRAYTMF 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P ++ ++ L TSEL RA+G+S +L + LL V + G
Sbjct: 65 PTAAVIGALMGLGQLAATSELTALRALGLSRRRLSVSVAIALSLLTAVMVFSAETLGPWG 124
Query: 128 EKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE-------NHIWEDF 179
+ L K W + + D F+ A + I D
Sbjct: 125 QDRADALKASAKWGRDIATTRYSGLWAR----EGDTFLSAAGGEEQLVGDKGTRLILRDV 180
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-RIPIDKNSTTLNIPIKMDGFQ 238
I + +I A A D L V +G R + ++D
Sbjct: 181 RLYRIAEDGQIASITHAATAEHDRDGWVLTGVRRDTFGERSATRQEVAREPWNSRLDAGA 240
Query: 239 KFSEQFASRSFY--EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ R+ E+ + + + N E ++ PL ++A+ L A +
Sbjct: 241 LAAGIAKPRNLRITELRASIEYRER-NGLDARDFEDIYWSRWFYPLNVLALCLAAVPFAF 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS + GI + + + A +P I+ +++S +L
Sbjct: 300 GSLRSGGMGKRLFLGILFALGFWLLQLFFGRMAGALKFDYRIAYALPPIVMLAVS-GLLF 358
Query: 357 QKEDG 361
+++ G
Sbjct: 359 RRKSG 363
>gi|317969817|ref|ZP_07971207.1| permease [Synechococcus sp. CB0205]
Length = 400
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 49/358 (13%), Positives = 114/358 (31%), Gaps = 19/358 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L R+ F L L+ + + + + + + + A R+P
Sbjct: 25 LPLLDRWLFAEMLGPLLFGIAAFTAVSLSVGVVFELVRKVAEAGLPLWAAGKVLALRMPG 84
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P TL+ ++ F L+ +SEL R+IG+ W+++ P +V + L+ + T + +
Sbjct: 85 FLVLSFPMATLMATLLAFSRLSGSSELTALRSIGVKTWRMVVPALVLAALMTLLTFVFND 144
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPW------MQISNPQQDIFIGAKKILPE--- 172
I S +++ ++ + P + G ++
Sbjct: 145 VIVPSANYSASNVLDSALGRALSAQTGKNVVYSRFGRITPKEPGGNAGEGLTQLFYAKEF 204
Query: 173 -NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGR-----IPIDKN 224
N + T + ++++ A+ A+ ++ + + +
Sbjct: 205 KNGEMQGVTLLDFSREDQ-QQVLTANTAVWDENRAMWEFRNGRILNIDAANNFTTSANYT 263
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN-IFHNYRAETQFYFLIVIPLM 283
S A + + + + ++ R + P +
Sbjct: 264 SYYYPFTRAPQDVGMLPSDAAQMTVAQARRAEALLVQAGDQKEARRLRVRIQEKFAFPAI 323
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ LI +S+ + + + F Y + I S G G L P AA
Sbjct: 324 CLVFGLIGSSLGVRPNSRTSRSQGFGISVLLIFGYYLMSFIFSSLGIKGTLYPFFAAW 381
>gi|197121804|ref|YP_002133755.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. K]
gi|196171653|gb|ACG72626.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. K]
Length = 360
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 53/357 (14%), Positives = 125/357 (35%), Gaps = 15/357 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL+RY + L L L G + + +D + + L A + ++
Sbjct: 2 ILFRYVARRMLGAFLVALAGVVGIYLAVDFVDNASAYTGAGWLPA--VLQLYAYKAAGVV 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P ++ + +T E RA+G+ W+L P + ++L G V++ + +
Sbjct: 60 YMVAPAALILGAGIATSMFRQTREYTAMRAVGLGPWRLAVPVLAVTLLAGGVLVVLNDAV 119
Query: 124 ATSGEKIGIDLIQQWKDNGD-----KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ ++ G + W + + LP+ +E
Sbjct: 120 GVQAAERAEEITAHRFARGGNLRRFLAAREPKRWFR--GMDGKRVYHLRGNLPDGG-FER 176
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GRIPIDK-NSTTLNIPIKM 234
T + + + R DA L+ V + + G + +++ +
Sbjct: 177 VTVYELAEGFTLARRIDAARMHPDGRAWILEDVEDRTFRPDGSMALERADRRRYAFDEPP 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D F + + + +I+++ K + + Y + PL + L+A ++
Sbjct: 237 DAFAVIAGKPDQMRWNTLIRQIGI-RKRLGQPVTEFQLERYDRLAYPLAGIPGALLALAL 295
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+L R + + + + + + + G SG + P A+ P ++ ++L
Sbjct: 296 ALRRDRKGHLAAALLEAVGVTLLFWGMQGVSSALGLSGRVAPWIASWAPNVVFLALG 352
>gi|258593792|emb|CBE70133.1| putative Inner membrane protein yjgQ [NC10 bacterium 'Dutch
sediment']
Length = 362
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 53/362 (14%), Positives = 122/362 (33%), Gaps = 19/362 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+ R+ + ++ + + + ++ L + +G Y++ + +P +
Sbjct: 10 TIDRHIWFRVIRGYALVMAVLLSVFSLMALVNELDSVGR-GTYTLGDAFLNVILTIPSRM 68
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ P ++ +I+ L + EL+ + +G S ++ V ILL I + V I
Sbjct: 69 IELAPTTAVLGSIIGLGELASSHELIAMQTLGTSPLRIGASVTVTGILLMIAVIGVQEWI 128
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A S +++ Q + + W + FI ++LP I +
Sbjct: 129 APSADQLAYMRRIQAISKPEALHTRQGFWSR----DGRQFIRVYQVLP-GRILSNVEIYE 183
Query: 184 IDKKNKIIHRKDADLAIIYN-DKVKLKKVVEYQYGRIPIDKNSTTLN------IPIKMDG 236
D +++ A A + L VV+ + P + +
Sbjct: 184 FDDNHRLRLVTWAARAEPEGSHRWVLIDVVQRMVDGGGVASKQLASLSWAGSLTPTQAEL 243
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+E + + + I + + + R E + + + +PL + M L+A L
Sbjct: 244 LVLPAEILSRSTLSQYIAFLKKTGQ----DVARLEIRLWQQMTMPLSTLMMVLVAIPFVL 299
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + +G G + + G L L P L + + + +
Sbjct: 300 GPLRKATAGKRILHGSLIGAAFHLGSHFIAHLGAILHLNAALTVLSP--LAVLGGVTVWV 357
Query: 357 QK 358
+
Sbjct: 358 YR 359
>gi|293406596|ref|ZP_06650522.1| predicted protein [Escherichia coli FVEC1412]
gi|298382335|ref|ZP_06991932.1| predicted protein [Escherichia coli FVEC1302]
gi|291426602|gb|EFE99634.1| predicted protein [Escherichia coli FVEC1412]
gi|298277475|gb|EFI18991.1| predicted protein [Escherichia coli FVEC1302]
Length = 342
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 50/323 (15%), Positives = 115/323 (35%), Gaps = 18/323 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 29 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 87
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 88 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 202
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDK----NSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 203 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLETLDNLAWQSAFTSMNL 262
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + + + + P++ +AM L+A
Sbjct: 263 EELSMPGNTFSVRQLNHYIHYLQETGQ----PSSEYRLALWEKLGQPILTLAMILLAVPF 318
Query: 295 SLEFSRSNQPRIIVAYGIFSGFM 317
+ RS +A G+ G +
Sbjct: 319 TFSAPRSPGMGSRLAVGVIVGLL 341
>gi|285019431|ref|YP_003377142.1| permease [Xanthomonas albilineans GPE PC73]
gi|283474649|emb|CBA17148.1| putative yjgp/yjgq family permease protein [Xanthomonas
albilineans]
Length = 368
Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 52/345 (15%), Positives = 112/345 (32%), Gaps = 15/345 (4%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L T L + L ++ L+ +G+ +YS+ A VP +
Sbjct: 11 YVGRAVLGTVLLTWAVLLGLDVIMALSNEFKDIGK-GSYSLGHAVAYVAYTVPRRAYTLF 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P ++ ++ L TSEL RA+G+S +L +L + V +
Sbjct: 70 PTGAVIGVLMGLGQLAATSELTALRALGLSRRRLSLAAAATMTVLIVAMVFSGETLGPWA 129
Query: 128 EKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENH---IWEDFTSIT 183
+ + K N + + W + + + G + + D +
Sbjct: 130 QNQADVIKANAKFNSNMSMARYSGLWAREGDTFLNAQAGEEHLQDGGGSWLELRDVRLYS 189
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST-TLNIPIKMDGFQKFSE 242
+D+ ++ A A + + LK+ + + + + + P ++D S
Sbjct: 190 LDQNGRLATLTHASSAEHHANGWTLKQGYRDTFAERSVQRETFDSQPWPSQLDAAALASG 249
Query: 243 QFASRSFYEIIKKMSFS-NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
R+ +S + N E Q++ P+ ++A+ A + RS
Sbjct: 250 LAKPRNLSAHDLHVSIEYRQRNGLDARDYEDQYWSRWFYPINVLALCFAAIPFAFGALRS 309
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGK--------SGILLPVA 338
+ GI + + + + L P+
Sbjct: 310 GGMGKRLFLGILFALVFWLLQLFFGRMAGALKFDYRIAYALPPLV 354
>gi|317493504|ref|ZP_07951925.1| YjgP/YjgQ permease [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918447|gb|EFV39785.1| YjgP/YjgQ permease [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 359
Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 127/360 (35%), Gaps = 18/360 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I RY + + L +L + + Y ++ V+ +P
Sbjct: 2 KIFSRYLIRNIFIGFAAAAGLLIPLFTTFNLMNELDDVSP-GGYHWTQAVVVVLMTLPRS 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + PFI L+ IV L+++ EL R G SI+++ + ++L + +
Sbjct: 61 LIDLGPFIALLGGIVGLGQLSKSMELTAIRTTGFSIFRISIVALCAGLMLTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKS-DIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA+ E+ + + + S I W + N + K L E++
Sbjct: 121 IASPLEQRALQMKNAAIALDESNDSVGNILWARQGNEFVTV-----KSLSEDNQPVGVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDKNST----TLNIPIKM 234
+ A A I + L + + G+ ++ + ++ + +
Sbjct: 176 FYYRPDRSLESYIYAQKATILDGNIWMLSGINEKRWVSGKETVETKESLQWKSIFTGMTL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
S F+ + + I + +++ +I + + + ++ +AM L+A
Sbjct: 236 KELTMPSSTFSIKQLNQYITYLQNTDQPSI----EFKIALWQKLGRAILTLAMILLAIPF 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G Y I+ + G L L P +++++++
Sbjct: 292 TFSVPRSPGLGSRLAIGVIVGLFTYISYQIVVNVGLLFSLNAAIVTLTPPAFILAIALVL 351
>gi|157413956|ref|YP_001484822.1| putative permease [Prochlorococcus marinus str. MIT 9215]
gi|157388531|gb|ABV51236.1| Permease [Prochlorococcus marinus str. MIT 9215]
Length = 403
Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 51/378 (13%), Positives = 126/378 (33%), Gaps = 29/378 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRVP 60
+L R+ + ++ + ++ + + ++ ++ E + + +P
Sbjct: 25 IPLLDRWLLGQIIPPMIFAISAFTVISLSVGVMFDLIRKVVEY-GLPLFLALKVLFFSLP 83
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P L+ ++ + L+ SEL+ +++GI +++ P + SI + T
Sbjct: 84 SFLVLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIIAPAIALSIFMTGLTFYFN 143
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP--------- 171
+ + K+ ++ + ++ M + I A P
Sbjct: 144 DNLVPKSNKLAEATLRAGIGSSFSEEEGKENIMFSRYGSR---INASTKKPTKNYSQLTH 200
Query: 172 -------ENHIWEDFTSITIDKKNKIIHRKDADLAIIY--NDKVKLKKV----VEYQYGR 218
+N + + T + +++ + AD A N K +
Sbjct: 201 IFYAQWYKNKLMGNVTLLDFSRED-LQQILKADSARFDKKNSSWIFSKGSIVSITPSGQT 259
Query: 219 IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFL 277
I T K + + + I+ K+ R + +
Sbjct: 260 TNIQFKEYTYPFVEGPMELAKVPKDANEMTLKQAIQAEKIYKKTGNIKEVRRIKVRIQEK 319
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
+P + LI +S+ + + + + + Y + I S G G+L P+
Sbjct: 320 FTLPFACLVFGLIGSSLGSKSNLRSSKSQGFGLSVILILIYYVMSFIFSSLGVKGLLPPI 379
Query: 338 AAALIPVILTISLSILIL 355
AA +PV++++ I +L
Sbjct: 380 FAAWLPVLISLGGGIYLL 397
>gi|114331101|ref|YP_747323.1| permease YjgP/YjgQ family protein [Nitrosomonas eutropha C91]
gi|114308115|gb|ABI59358.1| permease YjgP/YjgQ family protein [Nitrosomonas eutropha C91]
Length = 352
Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 62/362 (17%), Positives = 121/362 (33%), Gaps = 18/362 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I +RY L + + + L DL + + +G+ Y+ + A +P
Sbjct: 2 KICYRYIALQVLTGMIIATVVLLPLFSFFDLLDQLDDVGK-GTYTTRDAFLYTAMLMPRR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
QI PFI L+ + L + ELV R G S + + L T+ +
Sbjct: 61 FIQIAPFIALLGTVGALGGLAVSLELVAMRVAGFSPLMISLAPIGIGGGLITSTIALEYL 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A ++ I L + + + W + + + ++L + D +
Sbjct: 121 VAPQFQQQAIVLRAVALEQSAELGKGLGIWTR----NEQNILRIGEMLHKG-RAIDIEVM 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNST------TLNIPIKMD 235
DK+ + A A I++ KL V + I + P +
Sbjct: 176 HFDKQGLMTAHIHAQYADIFDKSMWKLHDVTVRMFAPDRIFSRKVHALQWHSFLGPEDIA 235
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
K E + + + + + + +M +AM LIA
Sbjct: 236 TLTKPPESLTPLELLHHAEFLKMTGQK----ADAYVMALWRKVGSVVMTIAMILIAIPFI 291
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R +V + G +Y + I+ + G L P+ ++ P + I ++ L
Sbjct: 292 FGSVREGLGGKLVLASLM-GISIYLLDQIIANIGLVFQLNPIVVSIAPGSILIVIAAYWL 350
Query: 356 LQ 357
L+
Sbjct: 351 LR 352
>gi|229496640|ref|ZP_04390354.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
gi|229316537|gb|EEN82456.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
Length = 358
Score = 143 bits (362), Expect = 4e-32, Method: Composition-based stats.
Identities = 63/358 (17%), Positives = 125/358 (34%), Gaps = 10/358 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY + +L T +L + + V D+NE ++ VP
Sbjct: 1 MFLRLDRYIIRLFLGTYFSSILLILSVAIVFDINERISKFLNPECSLYEIVFHYYLNFVP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
P + I L +E++ A G+S +LL P++ + ++ + T L+
Sbjct: 61 YYANMFSPLFVFLSVIFFTSKLAEKTEIIAILASGVSFKRLLRPYLFSAAIVALLTFLLS 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + G ++ D ++ + + ++ + +P +I +N +F
Sbjct: 121 SFVIPPGSRVRNDFQNKYFRDKRQTYAESVQI--QVSPSLFAYIH--SYSADNKTGYNFM 176
Query: 181 SITIDKKNKIIHRKDADLAIIYN-DKVKLKKVVEYQYGR---IPIDKNSTTLNIPIKMDG 236
+ N I R A A + +L +YG I +K
Sbjct: 177 LDKFEH-NTIKSRLTAQTAEYDTLNTWRLYDYSITRYGAKRDTLERGTQLDTTINLKPQD 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F + + + + + + + E + +T+I S+S
Sbjct: 236 FLISAVDAETYTTPVLHQYIGELKSRGATNVDLLEVELQKRYAAIPAAFILTIIGVSLSS 295
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + +A GI F +T+ SF SG L P+ AA +P + ++I +
Sbjct: 296 RK-RKGGTGLSLAIGIALSFTYILFLTLASSFSASGALSPIVAAQMPNAIYAIIAIFL 352
>gi|78779866|ref|YP_397978.1| putative permease [Prochlorococcus marinus str. MIT 9312]
gi|78713365|gb|ABB50542.1| permease-like protein [Prochlorococcus marinus str. MIT 9312]
Length = 400
Score = 143 bits (362), Expect = 4e-32, Method: Composition-based stats.
Identities = 57/376 (15%), Positives = 128/376 (34%), Gaps = 26/376 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRVP 60
++ R+ + L+ + ++ + + ++ ++ E + + +P
Sbjct: 23 IALIDRWLLGQIIPPMLFAISAFTVISLSVGVMFDLIRKIVEY-GLPVLKALQALIYSLP 81
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P L+ ++ + L+ SEL+ R++GI +++ P + SI + T
Sbjct: 82 SFLVLSFPMAVLLSTLLSYGKLSANSELLALRSLGIKTSRIIAPAIAVSIFMTGLTFYFN 141
Query: 121 NPIATSGEKIGIDLIQQWKDNG---DKQKSDIIPWMQISNPQQDI-----------FIGA 166
+ + + K+ ++ + +K K++II + S + A
Sbjct: 142 DNLVPNSNKLAELTLRSGVGSSFNREKSKNNIIFSRKGSRIDTNNKPTKTNTFLTHIFYA 201
Query: 167 KKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY--NDKVKLKKV----VEYQYGRIP 220
+ EN+ + T + + N I A A+ N +
Sbjct: 202 SRF--ENNTMREVTVLDFSRVN-IKQILTAKSAVFDKKNSSWVFADGSIVSTDSTGQTTS 258
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIV 279
I+ + + + S E ++ K R + +
Sbjct: 259 INFKQYLYPFVEGPLDLARVPKDASDMSLKEALEAERIYKKIGDLKQIRKIQVRIQEKFT 318
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
+P + LI + + + + + + M Y I I SFG G+L P+ A
Sbjct: 319 LPCACLVFGLIGSILGSQSNLRSSKSQGFGLSVILILMYYVISFICSSFGVKGLLPPIIA 378
Query: 340 ALIPVILTISLSILIL 355
A PVI+++S L
Sbjct: 379 AWFPVIISLSGGFYFL 394
>gi|116070679|ref|ZP_01467948.1| possible permease [Synechococcus sp. BL107]
gi|116066084|gb|EAU71841.1| possible permease [Synechococcus sp. BL107]
Length = 384
Score = 143 bits (362), Expect = 4e-32, Method: Composition-based stats.
Identities = 55/373 (14%), Positives = 116/373 (31%), Gaps = 24/373 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+L ++ L+ + +L + + + E+ ++ + I L +P
Sbjct: 12 IPLLDQWLLAEIAAPLLFAIASFTVLGLSIGVMFELARRL--VDGLPILVALQLLLLNIP 69
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P TL ++ + L+ SEL R++G+S +L+ P + SI L T +
Sbjct: 70 SFLVLSLPMATLFATLLAYSKLSSNSELTALRSLGVSTTRLVVPALALSIFLTGLTFVFN 129
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSD-----------IIPWMQISNPQQDIFIGAKKI 169
+ I +Q+ + P + S+ A++
Sbjct: 130 DVIVPRANTQAEITLQKGLGRALATEKGKDITFNSFGKIYDPKTETSSRGLRQLFYARRF 189
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYG----RIPIDK 223
D T + + + A+ A+ K + +
Sbjct: 190 EQGE--MLDVTLLDFSRADYRQMWI-AERAVYNEAKAMWEFFNGQVLTLNPNGSTTRLAF 246
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPL 282
+ + K + + + I + + R + P+
Sbjct: 247 DENFYPLSSGPLQVAKLPDDANDMTLSQAISAEKIESDAGNIKAARKLRVRIQEKFSFPM 306
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ LI +S+ I Y + S G SGIL P AA +
Sbjct: 307 ACIVFGLIGSSLGARPGSRTSRSQGFGVSILLILGYYALSVSFSSLGVSGILPPFFAAWL 366
Query: 343 PVILTISLSILIL 355
PV++++ L+L
Sbjct: 367 PVLISLGAGGLLL 379
>gi|295132762|ref|YP_003583438.1| permease [Zunongwangia profunda SM-A87]
gi|294980777|gb|ADF51242.1| predicted permease [Zunongwangia profunda SM-A87]
Length = 358
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 65/360 (18%), Positives = 135/360 (37%), Gaps = 11/360 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K YL T LL + + ++L E +++ E A
Sbjct: 2 KILDWYILKRYLGTFSMMLLLFIPIGITVNLAEKIDKILEN-EVPFVEVAEYYLNFTIYF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P + I L +E++ + G+S ++ L P+++G+ ++ I + +
Sbjct: 61 ANLLFPLFLFLSIIWFTSKLANNTEVIAFLSSGVSFYRFLRPYIIGATIVCIAALGLSMF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A K + ++ G + + + Q+++ + I A P+ H +F
Sbjct: 121 LAPKASKGFNEFKYEYLKRGHETQETKDVYRQVNDNE---VIYASHFRPKTHTANNFVIE 177
Query: 183 TIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGRI-PIDKNSTTLNIPIKMDGFQK 239
+ N++ + A + L V + G I N L+ + + +
Sbjct: 178 HF-EGNQLKFKISASRLKFNTEDSTYTLTNVDKRIIGENGDIMSNQAKLDTILPFEFDEL 236
Query: 240 FSEQ--FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + SF E+ + + ++ + Y + IP+ +T+IA +VS
Sbjct: 237 TPETYIAETLSFSELNEFIKKESRRGSGNMNMYLVAAYKRVSIPVSAFILTIIAVAVS-S 295
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + +A GI F+ + + + P+ A IP I L++ +LL+
Sbjct: 296 MKRRGGMGVNLAVGISLAFIFIFFDKVFGTIAEQSTFSPLLAVWIPNISFGILAVFLLLK 355
>gi|114326914|ref|YP_744071.1| hypothetical protein GbCGDNIH1_0250 [Granulibacter bethesdensis
CGDNIH1]
gi|114315088|gb|ABI61148.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
CGDNIH1]
Length = 355
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 61/359 (16%), Positives = 121/359 (33%), Gaps = 17/359 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY LK + L +++ + +G+ Y + A+ A +P + Q+
Sbjct: 5 RYAAMAALKAVGLSAIALTALFSLLEFVQQLASVGQ-GRYGMLDAAIYVALTIPYRLLQV 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P L+ ++ L R EL R +G+S +++ + SI L + L+ +
Sbjct: 64 FPVSMLIGTLLGLGGLARNGELTALRGLGMSERRIILSVIAFSIPLMVILFLMAQFVIPP 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ Q W+ N + + F+ + + + +
Sbjct: 124 AQREA----QTWRSNALPDTTALRSQDSFWAYGDRHFLNIQHFEHHDEP-YNIDIFSFAP 178
Query: 187 KNKIIHRKDADLA-IIYNDKVKLKKVVEYQYGRIPIDKNS------TTLNIPIKMDGFQK 239
++ A A I+ ND+ L V+ + K T P + +
Sbjct: 179 DGELHRYLHAQSADILPNDRWVLHDVLSRTLVDGQLRKAHLDRLDWTPFLTPQQTQFLRL 238
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + + + K R E + + I IPL ++AM + A
Sbjct: 239 RPDAMPPLALWRYVHSL----KQRGLQAIRYEQELWAKISIPLTMMAMVIAATPFVFGGG 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R +A G G + + I L P AL P +L + L I + ++
Sbjct: 295 RVQNTGAFIALGAAIGVVFTLVQQISGHLDVLLNLNPAVTALTPPVLLMWLGIDLFYRR 353
>gi|46580073|ref|YP_010881.1| permease [Desulfovibrio vulgaris str. Hildenborough]
gi|120602469|ref|YP_966869.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris DP4]
gi|46449489|gb|AAS96140.1| permease, putative [Desulfovibrio vulgaris str. Hildenborough]
gi|120562698|gb|ABM28442.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris DP4]
gi|311233928|gb|ADP86782.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris RCH1]
Length = 360
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 65/358 (18%), Positives = 132/358 (36%), Gaps = 14/358 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L+RY F+ L+ L L L + DL + + + E + + PLII
Sbjct: 3 LLFRYLFRNNLQVILPTLAVGTGLYLLSDLFDRLDDILE-AGVPGNVAIWYFVAKTPLII 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QI+P + L+ ++ ++R EL+ +A G+S + FVV +L + + +
Sbjct: 62 SQILPAVFLLAALIQLCLMSRDRELMALQAGGVSFGAIARFFVVYGLLWAVLQLGFSQVL 121
Query: 124 ATSGEKIGIDLIQQW-KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+GE+ + Q+ + + W N I + + P + F +
Sbjct: 122 GVAGERESARIWQEQVRGRTPGTRDLTNVWFTDDNH----VIHLEVVTPALRKGQGFAAY 177
Query: 183 TIDKKN-KIIHRKDADLAIIYNDKVKLKKVVEY---QYGRIPIDKNSTTLNIPIKMDGFQ 238
+ I A KL+ V + +G + + S + +
Sbjct: 178 GLAADGIHIDTVIRAKAFTGTAGTWKLQDVEVFSTRDFGHAKLPEMSIAIGQDPQDFAVI 237
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+++ + ++ + T ++ + LV M L+A ++
Sbjct: 238 DPGADPQRLPLWQLGDAVEKL-RTAGSNVEGLRTAWHMKLAYAASLVVMGLLAVAM---V 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + + + F+ YT+ TI + G+ GI+ P AA IL ++ LL
Sbjct: 294 TWRDNIYLATGLALVFTFLFYTMFTIGSTLGQKGIVSPPIAAWGADILVGVVASARLL 351
>gi|333030546|ref|ZP_08458607.1| permease YjgP/YjgQ family protein [Bacteroides coprosuis DSM 18011]
gi|332741143|gb|EGJ71625.1| permease YjgP/YjgQ family protein [Bacteroides coprosuis DSM 18011]
Length = 363
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 61/364 (16%), Positives = 127/364 (34%), Gaps = 20/364 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ + RY K +L T ++ + + + V D E ++ + VP
Sbjct: 4 LLTRIDRYIIKKFLGTYIFAITLVISIAVVFDFTERMDRFMNNNAPWDAIIFDYYFNFVP 63
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ I L SE++ + G+S +L+ P+++ + ++ +FT ++
Sbjct: 64 YFANLFSALFVFIAVIFFTSKLAENSEIIAMLSTGMSFSRLMKPYMISAAIIALFTFVLG 123
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ G ++ Q+ K + I ++ + + N
Sbjct: 124 GYVIPKGSVARVEFEDQYYKKRKKSSARNI----QLQVEEGLIAYIDRYSDYNKTGYRVI 179
Query: 181 SITIDKKNKIIHRKDADLAIIYN---DKVKLKKVVEYQYGRI-----PIDKNSTTLNI-P 231
+ K K+ A + + LK + + D T L + P
Sbjct: 180 LDKFEGK-KLSSHLTARSITYDSTAVNMWTLKDYTVRDFDGLHEYISKGDSKDTVLAMDP 238
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVAMTLI 290
FQ + + I K KS F N + E +++ I + +T+I
Sbjct: 239 SDFLEFQNQEQMMTNPELRAHIDK----QKSRGFGNTKVFEIEYHKRIAMSFAAFILTII 294
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
AS+S ++ + + G+ F TI +F SG++ P+ + IP IL +
Sbjct: 295 GASLSSRKAKRG-MGLHLGVGLALSFSYILFQTISGTFAVSGVVSPMVSMWIPNILYAFI 353
Query: 351 SILI 354
+ +
Sbjct: 354 AYYL 357
>gi|196228189|ref|ZP_03127056.1| permease YjgP/YjgQ family protein [Chthoniobacter flavus Ellin428]
gi|196227592|gb|EDY22095.1| permease YjgP/YjgQ family protein [Chthoniobacter flavus Ellin428]
Length = 380
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 54/372 (14%), Positives = 130/372 (34%), Gaps = 22/372 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY + +++ L L G + + +ID+++ N E + T++P +
Sbjct: 2 NILDRYVLRSFIEPFLMCLAGFIAIWLIIDVSDNFNDFIE-AHARFRTILEYYVTQLPTV 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P ++ + ++RT+EL+ G S+ ++L P + +L+ F +
Sbjct: 61 ILMSLPVGLMLGLLFSLSRMSRTNELISQLTAGRSVVRVLAPLIGVGVLMTGFCFWLNWE 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSD--IIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A E I D +Q+ K + + + + ++ P +
Sbjct: 121 HAPHAESIKKDAMQKIKRGKRATDVEPVLAHLFRDRRDDRTWYVRKLIFQPGEERMQGVH 180
Query: 181 SITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDKNSTTL--------NI 230
D+ I+ + A + KL+K + ++ +
Sbjct: 181 VTQQDETGHILKKWYASSVYYDPAKQEWKLEKGKIVTFKPDGDVEDQDLFLRGFRIIKDW 240
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P S +E+ + + +++ +P + +
Sbjct: 241 PETPWRVASTELNPGGLSVHELHEYLKYNSDFPAVQLAPYRANLADRYALPFQCLLAVFL 300
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTII----TIMKSFGKSGILLPVAAALIPVIL 346
AA + + ++R V G+ + +L ++ + GK + P + +PVI
Sbjct: 301 AAPLGIVYNRRG-----VIGGVTAAMVLLVLMIMSHSFFVMLGKGMRMDPNFSPWVPVIG 355
Query: 347 TISLSILILLQK 358
+ ++++ +
Sbjct: 356 LGIIGLVLMYYR 367
>gi|124009520|ref|ZP_01694195.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
gi|123984866|gb|EAY24834.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
Length = 371
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 63/376 (16%), Positives = 141/376 (37%), Gaps = 33/376 (8%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L +Y K +L T + ++ + ++ +ID+ E ++ +P
Sbjct: 1 MLKRLDKYILKKFLVTFFFVVIILISIIVIIDITEKIGDFNKMDQTVWQIFTKYYLNFIP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P + + + V L +E++ + G+S ++L P+++GS L+ + T +I
Sbjct: 61 YWANSLSPILIFIATVFVTARLATHTEIIAILSSGVSFKRMLVPYLLGSSLIAVLTFYLI 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH-----I 175
+ ++ + +D ++I+ + F + +H
Sbjct: 121 GWVIPKANRVRLKFENT-HIKDKFYFTDRNVHLKIAP---NTFAYIESYDNTSHVGYKFT 176
Query: 176 WEDFTSITIDKKNKII--------HRKDADLAIIYNDKVKLKKVVEYQYGRIPI------ 221
E+ + D K + R D K ++ ++ R
Sbjct: 177 LENISGFEYDGKRQQKKLNSKVECRRILWDK---DRKKWVMENYKITEFNRGDSLNYKIT 233
Query: 222 --DKNSTTLNI-PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
T +N+ P + F+EQ S ++ ++ + + + Y +
Sbjct: 234 YGQSLDTLMNLKPSDFESKYMFNEQLTSD---QLEAYIAELKQRGVGKLETYLVERYERM 290
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
P ++ +T+I VS +R + +A G F+ +I + +S GK+G L P+
Sbjct: 291 AYPFAVIILTVIGVIVSSRKTREG-AGLQIAVGFGLAFIYVMLIMVSRSIGKNGELPPLV 349
Query: 339 AALIPVILTISLSILI 354
AA +P IL + +++
Sbjct: 350 AAWMPNILFALIGLIM 365
>gi|300727713|ref|ZP_07061099.1| permease, YjgP/YjgQ family [Prevotella bryantii B14]
gi|299775001|gb|EFI71607.1| permease, YjgP/YjgQ family [Prevotella bryantii B14]
Length = 409
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 55/362 (15%), Positives = 123/362 (33%), Gaps = 18/362 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K ++ T + ++ + + V+D+NE + E + A +P
Sbjct: 49 IKRLDWYIIKKFIGTYFFSIILIISISIVVDINENLAKFTEYHAPLKAIVFDYYANFIPY 108
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I L SE++ A G+S +L+ P+++ +L+ + +
Sbjct: 109 FANLFSALFVFIAVIFFTSKLAGNSEVIAILAAGVSFKRLMRPYMISCVLISMLNYYLSA 168
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G + + +K+ +D + + + + F+
Sbjct: 169 YVIPHGNVVRQNFESLYKNKKKITSADNVMLQIDKG----VIVYIQHYDDRLKKGFGFSL 224
Query: 182 ITIDKKNKI--IHRKDADLAIIYNDK--VKLKKVVEYQYGRIPI------DKNSTTLNIP 231
+ K + + + I + K ++ E + K++T P
Sbjct: 225 DKFENKKLVDHMTAMEIQYDTISDSKYHWRMSNWKERHLRGLREHITNGNQKDTTLYMEP 284
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + E F S E I K N+ + E +++ I +T+I
Sbjct: 285 TDLVYSKGQQETFTSPQLKEYISKQKNRGSGNV---VQYEVEYHKRIASSFASFILTIIG 341
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S R + + G+ F + T+ +F P+ AA IP ++ ++
Sbjct: 342 LSLSSRK-RKGGMGMYLGVGLALSFAYIMLQTVSSTFAIQADAPPMLAAWIPNMIFAIIA 400
Query: 352 IL 353
+
Sbjct: 401 LF 402
>gi|255531333|ref|YP_003091705.1| permease YjgP/YjgQ family protein [Pedobacter heparinus DSM 2366]
gi|255344317|gb|ACU03643.1| permease YjgP/YjgQ family protein [Pedobacter heparinus DSM 2366]
Length = 367
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 66/364 (18%), Positives = 127/364 (34%), Gaps = 21/364 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y YL T LY L ++++ + DL+E + ++ A +P
Sbjct: 9 KILDWYIISKYLGTFLYTLTLFVVIIIIFDLSEKLDDFLSANLTFWQVISLYYAGSIPYY 68
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + P I + I + +E+V + G+S + L P+ V + ++ +
Sbjct: 69 VNMLSPLINFIAVIFFTAKMADQTEIVPILSGGVSFNRFLLPYFVSAFVIFAVNLASNLY 128
Query: 123 IATSGEKIGIDLIQQW-KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I ++ + K N KS+I + + +I ++ F+
Sbjct: 129 ILPYTNQLKNTFENTYVKKNDPSSKSNIHMKL-----DDNTYIFMDNFDNKSKTGTKFSL 183
Query: 182 ITIDKKNKIIHRKDADLAIIYN--DKVKLKK--------VVEYQYGRIPIDKNSTTLNIP 231
K + + + AD + KL + E + K++ P
Sbjct: 184 DNF-KGDVLTKKLIADEIKWDSLKRSWKLTNYSIRYVNGLKETFVSGTSLTKDTVLDMRP 242
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ E +++ E I+K S I+++ E Y + PL +TLI
Sbjct: 243 DDFSAYDNVFENLSNKELSEKIRK-ERIRGSGIWNDLLFEQ--YKRYLHPLSAFVLTLIG 299
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
++S R + + GI F K F G + P+ A + P + L
Sbjct: 300 VALSSRKVR-GGVGLPLGIGILLSFAYIVFNQFAKMFSLKGGMPPLLAVIAPTLFFGLLG 358
Query: 352 ILIL 355
+L
Sbjct: 359 FYLL 362
>gi|113953439|ref|YP_730497.1| membrane protein, YjgP/YjgQ family protein [Synechococcus sp.
CC9311]
gi|113880790|gb|ABI45748.1| putative membrane protein, YjgP/YjgQ family protein [Synechococcus
sp. CC9311]
Length = 392
Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats.
Identities = 49/376 (13%), Positives = 127/376 (33%), Gaps = 25/376 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ R+ + L+ L ++ + + + N + + ++P
Sbjct: 20 IPLIDRWLLGELIGPLLFALTAFTVVSLSVGVMFDLVRKIVESNLPWTIAVQVLLLKLPS 79
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P TL+ +++ + L+ SEL R++G++ +++ P + ++L+ + L +
Sbjct: 80 FLVISFPMATLMASLLAYSRLSANSELTALRSVGVTASRMIAPAIALALLMTSLSFLFND 139
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSD----IIPWMQISNPQQDI------FIGAKKILP 171
I + +Q+ + + +++ P A++
Sbjct: 140 VIVPRTNRSAEFTLQRALGKAIAAEKGDDIVYSRFGRVAEPDGKSSKGLTQLFYAREF-- 197
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQY----GRIPIDKNS 225
E+ T + + + AD A + + D +
Sbjct: 198 EDGTMIGVTVLDLSR-FGFTQMLVADKAKWNQSQAKWEFNDGQILTLTPSGSTTSADFDR 256
Query: 226 TTLNI---PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
+ P+++ K + E + +S + R + +P+
Sbjct: 257 YLYPLSPAPLRIAKLPKDANNMTVSEAIEAEQLLSDAGDRK--EARRLRVRIQEKFTVPM 314
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ LI +S+ + + + F+ Y + S G G L P AA
Sbjct: 315 ACLVFGLIGSSLGAKPNSRTSRSQGFGISVVLIFVYYVLSFSFSSLGVKGTLAPFLAAWG 374
Query: 343 PVILTISLSILILLQK 358
PV+++++ +LL++
Sbjct: 375 PVLISLA-GGGVLLRQ 389
>gi|282860071|ref|ZP_06269152.1| putative membrane protein [Prevotella bivia JCVIHMP010]
gi|282587159|gb|EFB92383.1| putative membrane protein [Prevotella bivia JCVIHMP010]
Length = 405
Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats.
Identities = 60/362 (16%), Positives = 127/362 (35%), Gaps = 18/362 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G L Y K ++ T ++ +L + + V D NE ++ + + A +P
Sbjct: 45 IGTLDWYIIKKFIGTYIFAILLIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFIPY 104
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ A G+S +L+ P+++ IL+ + T + +
Sbjct: 105 YSNLFSPLFVFIAVIFFTSKLAGNSEVIAMLAAGVSFKRLMRPYMISCILISVLTFYLNS 164
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G I + +++N ++ + ++ + F+
Sbjct: 165 FVIPHGTVIRQNFESLYRNNKKNTSAENV----QLQVAKNTVAYIQHYDDHYKRGYGFSL 220
Query: 182 ITIDKKNKIIH----RKDADLAIIYNDKVKLKKVVEYQYGRIPI------DKNSTTLNIP 231
+ + K + H D K+ + +K++ L P
Sbjct: 221 VKFENKKIVSHMTAMEIQYDTVADTKYHWKVSNYKIRILRGLKEHITTGTEKDTMLLMEP 280
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + E F S I K + SN+ + E +F+ I + +T+I
Sbjct: 281 TDLVYSKGQQETFTSPELLNYISKQTSRGASNV---VQYEIEFHKRIAMSFSAFILTIIG 337
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S R + + G+ F + T+ +F P+ AA IP ++ ++
Sbjct: 338 LSLSARK-RKGGMGLYLGIGLGLSFGYILLQTVSATFAIQANTPPILAAWIPNVIFAFIA 396
Query: 352 IL 353
Sbjct: 397 YY 398
>gi|197119769|ref|YP_002140196.1| membrane protein [Geobacter bemidjiensis Bem]
gi|197089129|gb|ACH40400.1| membrane protein, YjgP-related protein [Geobacter bemidjiensis Bem]
Length = 391
Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats.
Identities = 54/370 (14%), Positives = 127/370 (34%), Gaps = 20/370 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L+ Y FK L ++ ++ + ++ + E S + A +P
Sbjct: 5 MKKTLYAYIFKEIPTPFLVGMVTFTFVLLMGRFLKLAEMVVEK-GIPFSDVVRMVAYLLP 63
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IP L+ ++ F L+ SE+ ++ GIS++ LL P ++ + + + V
Sbjct: 64 PFWLFTIPMALLLAMLLAFGRLSGDSEITAMKSCGISLYGLLPPPMLFAACATLACLWVT 123
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
G L+ + I +N + + + + +
Sbjct: 124 VYAVPWGNSGFKKLMVEI---AQSSAGIAIKEKIFNNAFPGMVVYTQSLDTKAQTMGGVI 180
Query: 181 SITIDKKNKIIHRKDADLAIIYND------KVKLKKVVEY----QYGRIPIDKNSTTLNI 230
A + +D + +L+ + Q G + L +
Sbjct: 181 VHDERDPRTPTT-IFASTGALVSDPKSNSMEFQLRNGSIHRAEEQGGYRMVQFQEYNLRV 239
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ DG K + + + + E++ + + I + +++ + +P TL+
Sbjct: 240 ALA-DGSNKATRKVSEMTLDELLHPPKGTQQKEIISR---DLEYHSRLALPFSCFVFTLL 295
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A + ++ RS + + I + Y ++ + G+ G L P+ A P ++ +
Sbjct: 296 AIPLGIQNRRSGK-AAGFSLSIGVILLYYVTLSAFDTLGERGTLPPLLAGWSPNLIFLLA 354
Query: 351 SILILLQKED 360
+ + D
Sbjct: 355 GAYLFKKTSD 364
>gi|126661397|ref|ZP_01732459.1| hypothetical protein CY0110_10922 [Cyanothece sp. CCY0110]
gi|126617328|gb|EAZ88135.1| hypothetical protein CY0110_10922 [Cyanothece sp. CCY0110]
Length = 353
Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats.
Identities = 43/354 (12%), Positives = 130/354 (36%), Gaps = 23/354 (6%)
Query: 22 LGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFN 81
L +++ V + L+++ +++ + N + + + + +VP +P ++ ++ +
Sbjct: 1 LVSVLGVAIGYLSDLADKVVD-SNLPLMQASEILLLKVPEFTAYALPISVMLSTLLTYGR 59
Query: 82 LNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN 141
L+ SEL+ R+ G+S+++L+ P +V S+ + T L+ + + ++ ++
Sbjct: 60 LSNDSELIAFRSCGVSLYRLIIPAMVMSLAVTGVTFLMSELVVPAANYRATAILVEYLQE 119
Query: 142 GDKQKSDIIPWMQI-------SNPQQDIFIGAKKILP-ENHIWEDFTSITIDKKNKIIHR 193
+ + + Q+ + + T + ++ ++
Sbjct: 120 DHPYWQNKDIFYPDYEQVTLPNGDQEKRLKHLFFAEQFDGQHLKTLTVLEWLEE-RLNRI 178
Query: 194 KDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTL---NIPIKMDGFQ-----KFSEQ 243
+D A + YQ K + +P+ F+ + +
Sbjct: 179 VVSDSATWNGQEETWDFFNGTIYQLSSDASYKEAYPFEHRQLPLTKAAFEFALQGRDPYE 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ +K + + + + P + V ++ +++ + ++
Sbjct: 239 MNIIQARQYMKILKMMGDDKKLRM--FQVRIQQKLAFPFICVVFGVVGSALGATPQQMSR 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ F Y + ++ S G G++ PV A +P +L +++ +L +
Sbjct: 297 -ATGFGLSVVIIFSYYLLGFLIGSLGLMGLISPVLAGWLPNLLGLAMGGWLLYR 349
>gi|149196258|ref|ZP_01873313.1| permease YjgP/YjgQ [Lentisphaera araneosa HTCC2155]
gi|149140519|gb|EDM28917.1| permease YjgP/YjgQ [Lentisphaera araneosa HTCC2155]
Length = 358
Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats.
Identities = 69/359 (19%), Positives = 133/359 (37%), Gaps = 15/359 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY + L + + G + + F+ ++ + + M +L N + +P
Sbjct: 3 FSILSRYIMRSMLLPFVCCICGFIFIFFIANVQDDLSDMLKLDN--TKDIIIYYFLLIPD 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I P L+ I F +LNR E++ R+ G+S+ +L P + S+L+GI L
Sbjct: 61 KFTYIAPMSLLLATIYCFSSLNRNHEVIAMRSAGLSLTKLSAPIYLFSVLVGISLYLSSQ 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +L + + +S + +Q E++ +
Sbjct: 121 YLEPYCRLKTFELNTRAES---MDRSHEFHIFTAFDGKQKR--KWAVSSDEDNNFSAIQI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYND-KVKLKKVVEYQYGRI----PIDKNSTTLNIPIKMDG 236
+ D+ N + +A ++ K V ++ I+K+ L IK D
Sbjct: 176 LEYDENNNLTREIEALSGEFNSEIGWNFKNVSIAEFSEDHRIKKIEKHDNYLRNDIKDDP 235
Query: 237 --FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
E + S +I +++ + ET+ Y LI P + L+ +
Sbjct: 236 IILSNIDELKGTPSIAQIKSELNSGRPVDTKRKAFLETRQYSLIFSPFSCLIGVLLGIPL 295
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ RS + I + Y I + + G++ IL P+ AA I + IS +
Sbjct: 296 ATSSQRSPGMSA-ASRAIGIMLVYYIINSAFTNLGRNDILPPMMAAGIGTFIFISFGLF 353
>gi|254432417|ref|ZP_05046120.1| unclassified ABC-type transport system permease [Cyanobium sp. PCC
7001]
gi|197626870|gb|EDY39429.1| unclassified ABC-type transport system permease [Cyanobium sp. PCC
7001]
Length = 386
Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats.
Identities = 51/373 (13%), Positives = 121/373 (32%), Gaps = 24/373 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRVP 60
+L R+ + ++ + + + + E+ ++ E + + +P
Sbjct: 12 LPLLDRWMLGELIGPLVFGVAAFTAVSLSVGAVFELVRRVAE-SGLPLDVALQVLLLELP 70
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P TL+ ++ + L+ SEL R++G+ W++L P VV ++ + + T
Sbjct: 71 SFLVLSFPMATLMATLLTYSKLSGNSELTALRSVGVPTWRMLVPAVVLAVAMTMLTFGFN 130
Query: 121 NPIATSGEKIGIDLIQ---------QWKDNGDKQKSDIIPWMQISNPQQDIFI-GAKKIL 170
+ S + + +DN K + S + I A++
Sbjct: 131 EAVVPSTLSQAEATLSRAIGRAVAGEQRDNVVYSKYGRVELPDGSTERGLTHIFYAQRFN 190
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGR------IPID 222
+ ED T + + + + AD A + + + G
Sbjct: 191 KG--VMEDVTLLDLSRSAHRVM-LTADRARWSSRDAQWEFLDGQVVGIGSSGSEAITSAR 247
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN-IFHNYRAETQFYFLIVIP 281
+ + + K + S + +S + + + P
Sbjct: 248 FDRYLYPLGNQPLKVAKLPKDANEMSIGQARTAERLLRESGDLRAARKLRVRIQEKFSFP 307
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ + LI +S+ + F Y + S G G L P+ +A
Sbjct: 308 AVCLVFGLIGSSLGARPHSRRSRSQGFGLTVLLIFGYYLVAFSFSSLGVKGTLTPLLSAW 367
Query: 342 IPVILTISLSILI 354
+PV++ + +++
Sbjct: 368 MPVLIGLGTGLVL 380
>gi|33861942|ref|NP_893503.1| putative permease [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|33640310|emb|CAE19845.1| possible permease [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
Length = 400
Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats.
Identities = 50/375 (13%), Positives = 127/375 (33%), Gaps = 23/375 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRVP 60
++ R+ L L+ + ++ + + ++ ++ E + + +P
Sbjct: 23 IPLIDRWLIAQILPPMLFAISAFTVISLSVGVMFDLIRKIVEF-GLPLFLAIKVLFFSLP 81
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P L+ ++ + L+ SEL+ +++GI +++ P + SIL+ T
Sbjct: 82 SFLVLSFPMAVLLSTLLAYGKLSANSELLALKSLGIKTSRIIAPAIAVSILMTGLTFYFN 141
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQ-----DIFIGAKKI 169
+ + S K+ ++ + + M +I + + F+
Sbjct: 142 DNLVPSSNKLAESTLRAGIGSSFSSEEGKDNIMFSRYGSRIESATNKPTKTNTFLTHIFY 201
Query: 170 LP--ENHIWEDFTSITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGR----IPI 221
EN+I + T + +++ I A A+ N + I
Sbjct: 202 ASWFENNIMQGVTVLDFSRQD-IQQILKAKSAVFDKENSSWIFSDGSIVSVDQGGQTTNI 260
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN-YRAETQFYFLIVI 280
+ + S + ++ ++ R + + +
Sbjct: 261 QFEKYRYPFVEGPLDLARVPKDATEMSLKQALEAERIYKETGNLKEIRRIQVRIQEKFTL 320
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
P + LI +S+ + + + + + Y + + SFG G+L P+ A
Sbjct: 321 PFACLVFGLIGSSLGSKSNLRSSKSQGFGLSVILILVYYVMSFVFSSFGVKGLLSPIIAT 380
Query: 341 LIPVILTISLSILIL 355
+PV++++ I L
Sbjct: 381 WLPVLISMGGGIYFL 395
>gi|294673581|ref|YP_003574197.1| hypothetical protein PRU_0844 [Prevotella ruminicola 23]
gi|294471872|gb|ADE81261.1| putative membrane protein [Prevotella ruminicola 23]
Length = 393
Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats.
Identities = 59/362 (16%), Positives = 128/362 (35%), Gaps = 18/362 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY ++ T ++ ++ + + V D+NE + + A VP
Sbjct: 33 LKRLDRYIIAKFIGTYIFSIILIISISIVFDVNENLAKFSTYNAPLKAIVFDYYANFVPY 92
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ A G+S +LL P+++ + L+ +
Sbjct: 93 FANLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLLRPYMISAALIAAVNFYLGG 152
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G ++ +D ++K+ + + M + ++ F+
Sbjct: 153 YVIPKGNQVKMDFEAKYKNKERNLSASNVQLMVQPG----VIAYLQQYDDVTKTGYGFSL 208
Query: 182 ITIDKKNKIIH------RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI----P 231
+ K + H R D+ Y+ K + K+ + R I+ + + P
Sbjct: 209 DKFENKKLVSHMTASVIRYDSISDSRYHWKAQSYKIRTLKGLREEIESGAVIDTLIQMEP 268
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + + E S + I K + + + E +++ I +T+I
Sbjct: 269 MDLVFSKGQQETLTSTELSDYISK---QVERGSVNVVQYEVEYHKRIATSFASFILTMIG 325
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S R + + G+ F + TI +F + + AA IP +L + ++
Sbjct: 326 VSLSSRK-RKGGMGMYLGIGLALSFGYILLQTISATFAINADTPALLAAWIPNLLYVIIA 384
Query: 352 IL 353
Sbjct: 385 YF 386
>gi|260062387|ref|YP_003195467.1| hypothetical protein RB2501_12362 [Robiginitalea biformata
HTCC2501]
gi|88783950|gb|EAR15121.1| hypothetical protein RB2501_12362 [Robiginitalea biformata
HTCC2501]
Length = 360
Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats.
Identities = 60/360 (16%), Positives = 131/360 (36%), Gaps = 10/360 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I+ RY K YL T LL + + +++L E +M + + +
Sbjct: 1 MLTIIDRYILKKYLSTFGLMLLLFVPIGIMLNLAEQIGKMIDN-EAPLVEILIYYGNFTI 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I + P + I + +E+V + G+S + L P+ +G+ ++ + L+
Sbjct: 60 YIGSLLFPIFLFLSIIFFTSKMANNTEIVAILSSGVSFGRFLRPYWIGASIIAVLMFLMG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I S K + ++ G K + + Q+ +I P I +FT
Sbjct: 120 MFIVPSASKGFNEFKFKYLKKGSKDRVTSNIFNQLGESD---YIYVSSFDPARQIGYNFT 176
Query: 181 SITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQY-GRIPIDKNSTTLNI--PIKMD 235
+ ++ ++ + + +L G I + L+ ++D
Sbjct: 177 YEHFGEDGELEYKISSANIRWLEEDSLYRLTSYTRRNLRGDTEIVETRRRLDTLFAFQID 236
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
S +++ +E+ + ++ + + Y +P+ +T+I +VS
Sbjct: 237 DLTPVSYIAETKNLFELNQFIADQRRKGASNVNTYVMVKYKRWALPVTAFVLTIIGVAVS 296
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + +A+GI F+ + + + + P+ A IP I + L +L
Sbjct: 297 -SIKRRGGMGVNLAFGIGVAFIYIFMDKVFGTLAEQSGFPPLLAVGIPNIFFLVLGYFML 355
>gi|254527024|ref|ZP_05139076.1| unclassified ABC-type transport system permease [Prochlorococcus
marinus str. MIT 9202]
gi|221538448|gb|EEE40901.1| unclassified ABC-type transport system permease [Prochlorococcus
marinus str. MIT 9202]
Length = 401
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 53/378 (14%), Positives = 127/378 (33%), Gaps = 29/378 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRVP 60
++ R+ + ++ + ++ + + ++ ++ E + + +P
Sbjct: 23 IPLIDRWLLGQIIPPMVFAISAFTVISLSVGVMFDLIRKIVEY-GLPLFLALKVLFFSLP 81
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P L+ ++ + L+ SEL+ +++GI +++ P + SI + T
Sbjct: 82 SFLVLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIIAPAIALSIFMTGLTFYFN 141
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP--------- 171
+ + K+ ++ + ++ M + I A P
Sbjct: 142 DNLVPKSNKLAEATLRAGIGSSFSEEEGKENIMFSRYGSR---INASTKKPTKNNSKLTH 198
Query: 172 -------ENHIWEDFTSITIDKKNKIIHRKDADLAIIY--NDKVKLKKV----VEYQYGR 218
+N + E+ T + +++ + AD A N K +
Sbjct: 199 IFYAQWYKNKLMENVTLLDFSRED-LQQILKADSARFDKKNSSWIFSKGSIVSITPSGQT 257
Query: 219 IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFL 277
I T K + + + I+ K+ R + +
Sbjct: 258 TNIKFKEYTYPFVEGPMELAKVPKDANEMTLKQAIQAEKIYKKTGNIKEVRRIKVRIQEK 317
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
+P + LI +S+ + + + + + Y + I SFG GIL V
Sbjct: 318 FTLPFACLVFGLIGSSLGSKSNLRSSKSQGFGLSVILILIYYVMSFIFSSFGVKGILPAV 377
Query: 338 AAALIPVILTISLSILIL 355
AA +PV++++ I +L
Sbjct: 378 FAAWLPVLISLGGGIYLL 395
>gi|150024706|ref|YP_001295532.1| hypothetical protein FP0611 [Flavobacterium psychrophilum JIP02/86]
gi|149771247|emb|CAL42716.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 361
Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/361 (18%), Positives = 132/361 (36%), Gaps = 11/361 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL +Y K YL T L LL + + +D+ E N++ E I + +
Sbjct: 1 MLTILDKYILKRYLATFLVMLLLFIPIGITVDIAEKINKILEN-KVPIDKVLSYYVDFII 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P + I L +E++ + GIS + L P+++G+ ++ F +L+
Sbjct: 60 YFTNFLFPIFLFLSIIWFTAKLANNTEIIAILSSGISFSRFLRPYIIGATIVSFFALLMG 119
Query: 121 NPIATSGEKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+A + + + NG + + + + + FI E +F
Sbjct: 120 FFLAPKASEGFKNFRYLYLIGNGKDEMRETNDVYRQISETE--FIYVSNFDIEAKTAYNF 177
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIP---IDKNSTTLNIPIKM 234
+ + K++++ A + + L + G + +NS + +
Sbjct: 178 VFEKFNAE-KLVYKISASSIQWNSKEKTYTLLNYSKRTVGALNDKIETENSKPMKFNFDL 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + SF ++ K + K + Y IP+ +T+IA +V
Sbjct: 237 EDLTPVVYIAETLSFTDLNKFIEKEKKRGSANINTYLVVKYRKYSIPISAFILTIIAVAV 296
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S R + +A GI F + I + + + P+ A IP + L+ +
Sbjct: 297 S-SMKRRGGMGMNLAIGIAIAFSYIFLDKIFATLAEKSSIEPIIAIWIPNFIFGILAFYL 355
Query: 355 L 355
L
Sbjct: 356 L 356
>gi|72382010|ref|YP_291365.1| putative permease [Prochlorococcus marinus str. NATL2A]
gi|72001860|gb|AAZ57662.1| unclassified ABC-type transport system permease [Prochlorococcus
marinus str. NATL2A]
Length = 395
Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 59/374 (15%), Positives = 120/374 (32%), Gaps = 23/374 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLN-EIQNQMGELPNYSISRGAVLAATRV 59
+ +L R+ L + + ++ + + ++ ++ E+ S + ++
Sbjct: 21 IIPLLDRWILFELLPPLFFSIAAFTVVSLSVGVIFDLIRKIVEI-GLPFSVAIQILLLKL 79
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + P L+ ++ + +LN SE+ ++IGIS+++L+ P ++ SI + T +
Sbjct: 80 PSFVVISFPMAMLLSTLLAYGSLNDNSEIKALKSIGISVYRLILPGLILSIFMSYMTFIF 139
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP----------QQDIFI-GAKK 168
N I S K ++ + + A K
Sbjct: 140 NNNIVPSTNKNAEIILANSLGRSFANEQGEDIIFSKKGEILDPYSSYKKNGVTHLFYAWK 199
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKL--KKVVEYQYGRIPIDKN 224
+ D T I K A I +DK + ++
Sbjct: 200 FIDG--QMLDVTVIDFSKLG-FTQMLKAKKGIWNSDKNNWEFFEGDILTLSPDGSNTRTK 256
Query: 225 STTLNIPI--KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF-HNYRAETQFYFLIVIP 281
+ P+ ++ + + + E M S R + + I +P
Sbjct: 257 FLSFLYPLGTELTNIAQLPKDANDMNLGEANTAMKLYQSSGNIKEARRMKVRIQEKITLP 316
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ LI S + R I + Y + S G GI+ P AA
Sbjct: 317 IACSVFALIGCSFGVMQKRGGGRSQSFGLSIILILIYYILSFSFSSLGVKGIINPFFAAW 376
Query: 342 IPVILTISLSILIL 355
PV L++ +L
Sbjct: 377 SPVFLSMLGGGFLL 390
>gi|86141356|ref|ZP_01059902.1| putative membrane protein [Leeuwenhoekiella blandensis MED217]
gi|85831915|gb|EAQ50370.1| putative membrane protein [Leeuwenhoekiella blandensis MED217]
Length = 358
Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 66/363 (18%), Positives = 139/363 (38%), Gaps = 17/363 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K YL T + LL + + ++L E ++M A+
Sbjct: 2 KILDWYILKRYLGTFITMLLLFIPIGITVNLAEKIDKMLAN-EVPFVEIALYYLDFTIYF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P + I L +E++ + G+S ++ L P+++G+ ++ + ++
Sbjct: 61 ANLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGVSFYRFLRPYLIGATIVCVGAYILGTY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + + ++ NG + + QI++ +I + P + + ++FT
Sbjct: 121 LAPAASQGFNEFTYEYLKNGKAARETRNVYRQINDND---YIYVSRFTPSSKMGQNFTLE 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGR-----IPIDKNSTTLNIPI-KM 234
+ N + ++ A + + +L + G+ I K T + + +
Sbjct: 178 HF-ENNTLQYKIQARSIVYRPEDTLYRLNGYKKRIVGKEGDILISEPKLDTLFSFDLEDL 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ +E + E I K S I R E Y +P+ +T+IA +V
Sbjct: 237 TPLEYIAETLTTPRLREFIDKERARGSSAI---NRYEVVLYKRYSLPVSAYILTIIAVAV 293
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S R I +A GI F+ + + + P+ A +P +L L+I +
Sbjct: 294 S-SMKRRGGMGINLALGISLAFIFIFFDKVFGTISEQSDFSPMVAVWLPNVLFGILAIYL 352
Query: 355 LLQ 357
L +
Sbjct: 353 LNR 355
>gi|262038164|ref|ZP_06011561.1| permease, YjgP/YjgQ family [Leptotrichia goodfellowii F0264]
gi|261747812|gb|EEY35254.1| permease, YjgP/YjgQ family [Leptotrichia goodfellowii F0264]
Length = 358
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/359 (12%), Positives = 130/359 (36%), Gaps = 9/359 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y Y+K+ ++ ++ + + + + + +++ + +P I+
Sbjct: 4 LDKYIILNYIKSFFLGMMMFFLIFILAESINLTGWIMD-GKFTLGEAVKYLSYGIPEIVT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
P L+ +++ + + E+ + GIS ++ ++ S + + + V I
Sbjct: 63 NTAPLGILLGSLLAISKMAKQLEITAMKTGGISFLRIAKFPLIFSFFVSLSVLYVNVDIL 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ + + K + + ++ + + + ++ I + I +
Sbjct: 123 GKSNSKKSNMKLLKLEQAEPVKVEKNFIL--VKIDKNRILYSGYVNKKDGIMREVEIIEM 180
Query: 185 DKKNK-IIHRKDADLAIIYNDK--VKLKKVVEYQY-GRIPIDKNSTTLNIPIKMDGFQKF 240
+ K + A + + E+ + + + + I +D
Sbjct: 181 ADEFKNVKTVYTASEGALEKGTDNWTFTNLKEHNIMTNVSKNIDPGVFKLKIPIDDILAD 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + E+ +K+ + + + FY+ I L M I S+ + R
Sbjct: 241 PVKAKNLTMPELREKIVYFTR-VGADSIDLLIDFYYRISFALASFVMCFIGLSLGSRYVR 299
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + + G+ Y TIMKS +G + A +P+++ + + I + ++ E
Sbjct: 300 -GGAAVNIGLSVIIGYSYYGFSTIMKSLASTGTIPVYIACFLPLLIYLGVGIKLFMEAE 357
>gi|148651872|ref|YP_001278965.1| permease YjgP/YjgQ family protein [Psychrobacter sp. PRwf-1]
gi|148570956|gb|ABQ93015.1| permease YjgP/YjgQ family protein [Psychrobacter sp. PRwf-1]
Length = 449
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 64/436 (14%), Positives = 132/436 (30%), Gaps = 88/436 (20%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K L L+ +LG L V + + Y+ R P +
Sbjct: 20 IISRYVKKNALFAMLFAVLGLWALQMVFAYLAELEDISD--AYTYVDALTYIFYRSPYFL 77
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QQ +P L+ +V L SEL++ RA G+SI++++ + + + I +L+ I
Sbjct: 78 QQFMPTGALLGAVVGLGLLANNSELIVMRAAGLSIYRIVGWVLQPAFIFVILALLINQFI 137
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS----------------NPQQDIFIGAK 167
+ K + S W + + Q I
Sbjct: 138 LPQSNVKASQIR---KPDTALLASVNGYWTLQNAPTEAGSTTDNKEGLSSEQAHNIIFID 194
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDA----------------------DLAIIYNDK 205
+I E +D N + A + N +
Sbjct: 195 YADANGNIGE-VKRWHLDADNNLTAVSKATGGTYVPSLQQGQDKPVVAAQDQSDSLANYQ 253
Query: 206 VKLKKVVEY-------------------------------------------QYGRIPID 222
+L V Q
Sbjct: 254 WQLDNVTTLKVADKAAILESDTLGNQPAAQLTDTQATSVDSDQSGQAMALTSQPLVAKQA 313
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
+++ +N+PI + + S ++ + F+ S + E F+ ++ P
Sbjct: 314 ESTDVINLPISPSSVYLLTRRAEDLSLTQLYEHKRFNA-SQGTRSLEHEVAFWQKLLSPF 372
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
++++ ++A S R++ + + I G + I + + P+ L+
Sbjct: 373 SVLSLVIVACSFVFGSLRTHSLGLRIVVAIIFGLLFSYIQDLTSFVSLATGAPPLLMVLL 432
Query: 343 PVILTISLSILILLQK 358
P+I + L ++ ++
Sbjct: 433 PIIGSGLLGFYLIRRQ 448
>gi|325278208|ref|ZP_08143701.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
gi|324096648|gb|EGB95001.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
Length = 241
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/245 (17%), Positives = 87/245 (35%), Gaps = 10/245 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L L + L + + + + Y++ + P +
Sbjct: 4 LDRYIGQSVLLAILAVLGIILGLASLFAFIDEMGDLSD--TYTVMQAGYYVLLTAPRRLY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P L+ ++ +L +SEL I RA G+SI +++ + ++L + +L+ +A
Sbjct: 62 EMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEYVA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + G+ Q S W + + F+ + P + T
Sbjct: 122 PVTENKAQADRSLAQGGGEAQSSKRGMWHRQ----GEEFVHINAVQPNG-LLLGVTRYRF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVE--YQYGRIPIDKNSTT-LNIPIKMDGFQKFS 241
D + KI A A +D L V ++ + K T ++ +
Sbjct: 177 DSERKIQTSSFARRAQYTDDHWLLSDVSTTFFRGDHTEVVKAPTERWDVSLTPQLLNTVI 236
Query: 242 EQFAS 246
S
Sbjct: 237 LAPES 241
>gi|126658379|ref|ZP_01729528.1| hypothetical protein CY0110_27505 [Cyanothece sp. CCY0110]
gi|126620311|gb|EAZ91031.1| hypothetical protein CY0110_27505 [Cyanothece sp. CCY0110]
Length = 394
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 59/370 (15%), Positives = 140/370 (37%), Gaps = 20/370 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY F L L+ + L + + L ++ ++ E +S + ++P
Sbjct: 22 IMDRYLFIELLLPFLFGMGIFTSLGLSIGTLFDLVRRVTE-SGLMLSVAMRILVLKMPGF 80
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ ++ + L+ SE++ R++G+S+++L+ P ++ +++ +V +
Sbjct: 81 VSLAFPMAMLLAALMAYSRLSSDSEIIALRSLGVSVYRLIIPVILFGLVVTGCAFIVNDW 140
Query: 123 IATSGEKIGIDLIQQ---WKDNGDKQKSDIIPWMQ--ISNPQQDIFIGAKKILPE---NH 174
IA + +Q+ + K+++ + P + Q + + E
Sbjct: 141 IAPAATHEAALTLQRAVNQERPDFKERNIVYPEYKTIQEEDGQQATVLTRLFYAEEYNGD 200
Query: 175 IWEDFTSI--TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTT 227
+ T + T + N+I+ + A I ++ Y R +
Sbjct: 201 KMKGLTILDRTQEGVNQIVTSESA-TWNISSNTWDFFNGTIYLIAPDGSYRNIVRFQHQQ 259
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVA 286
L +P + F + + + + S R + + +P + +
Sbjct: 260 LALPRAPLDLANRRQNFTEMTIAQTKEYLKAMQLSGDEKRVRKVKVRLQEKYAMPFVCLI 319
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
++ A++ + +N+ + F Y + + S G GIL P A +P IL
Sbjct: 320 FGVVGAAIGVRPQNTNK-ATSFGVCVGLIFGYYLLAFMSTSLGIWGILTPFLGAWLPNIL 378
Query: 347 TISLSILILL 356
++ L+L+
Sbjct: 379 GLTAGSLLLI 388
>gi|284929068|ref|YP_003421590.1| putative permease [cyanobacterium UCYN-A]
gi|284809527|gb|ADB95232.1| predicted permease [cyanobacterium UCYN-A]
Length = 402
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/369 (13%), Positives = 127/369 (34%), Gaps = 16/369 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + + + IL I + + + + + ++P
Sbjct: 29 FYLIDRYILSQLIGPLAFSVGLVSILGVAIGYLSDLSNKVVESDLPLIQALEIIFLKIPE 88
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+P ++ ++ + L+ SEL+ R G S+++L+ P + S+++ T +
Sbjct: 89 FTAYALPISMMLSTLLTYGRLSGDSELIALRVCGASLYRLVMPAFIISLIMTGITFIFSE 148
Query: 122 PIATSGEKIGIDLIQQ--------WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
I + ++ + W++ + + ++ + +
Sbjct: 149 LIVPAANYRVTSILVEHLQEERPYWQNKDIFYPDYEKVVLPDGSTEKQLKHLFFAEKFDG 208
Query: 174 HIWEDFTSIT-IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL---N 229
E T + ++KK I D+ ++ YQ + + +
Sbjct: 209 QKLETLTVLEWLEKKLNRIVVSDSAAWNAQDETWDFFNGTIYQLAPDSSYQGTYSFKHRQ 268
Query: 230 IPIKMDGFQKFSE--QFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVA 286
+P+ F+ E + ++ K M R + + I P + +
Sbjct: 269 LPLAKSAFEFIQEGRDPYEMNIFQAQKYMKILRVMEDEQKLRTFQVRVQQKIAFPFICIV 328
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
+I +++ N+ + + F+ Y + ++ S G G++ P AA +P +
Sbjct: 329 FGVIGSALGTSPQYINR-AMGFGLSVVIVFIYYLLGFLIGSLGLIGVVSPFMAAWLPNAI 387
Query: 347 TISLSILIL 355
+ + + +L
Sbjct: 388 GLGIGLYLL 396
>gi|22299113|ref|NP_682360.1| hypothetical protein tll1570 [Thermosynechococcus elongatus BP-1]
gi|22295295|dbj|BAC09122.1| tll1570 [Thermosynechococcus elongatus BP-1]
Length = 378
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 49/361 (13%), Positives = 120/361 (33%), Gaps = 14/361 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L +Y L + L L + + ++ Q+ + ++ L ++P ++
Sbjct: 16 LDQYLLSLLLPGFVLGLTVFTTLALTVGTIFDLVRQIAD-AQLPLTILLQLIGYQLPAVL 74
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ + L+ E + R++GI + ++L P VV ++L+ T+ +
Sbjct: 75 VLVFPMAVLLAVVGAMSRLSEEGEWIALRSVGICLGRVLIPVVVFALLVSGLTLALNETA 134
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L+ + S + + ++ + + T +
Sbjct: 135 VPIAKYESKKLMGELLQQERSLGSGTDIFYPEYDRHGNVRRLYYGHRFDGSRIQGITVLD 194
Query: 184 IDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPIDKNSTT-----LNIPIKMDG 236
+ ++ A+ A + L + + Y + +N + +P
Sbjct: 195 FSQP-QVTQVISAESAEWNVRESRWLLSQGIAYLISHTGVSRNLLQFDQQEIRLPRPAQS 253
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVAMTLIAASVS 295
S + + + + R + P + V L+
Sbjct: 254 QPLRPTDVNELSITQARRALQRLDPDREPELVRALKVHLAQSYAQPFLAVVFALLGVGFG 313
Query: 296 LEF-SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
L R + + + F Y + + + G +G L P+AAA +P + + ++I +
Sbjct: 314 LSPSQRRGRQGFGI--SVAVVFGQYVLTFFLGALGTTGTLSPLAAAWLPHSIGLVVAIAL 371
Query: 355 L 355
L
Sbjct: 372 L 372
>gi|206901914|ref|YP_002251684.1| putative permease, YjgP/YjgQ family [Dictyoglomus thermophilum
H-6-12]
gi|206741017|gb|ACI20075.1| putative permease, YjgP/YjgQ family [Dictyoglomus thermophilum
H-6-12]
Length = 362
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/354 (18%), Positives = 120/354 (33%), Gaps = 11/354 (3%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+Y F L + G ILV +I + + + S L ++P +
Sbjct: 7 HKYIFSEILGPFFLGIFG-FILVMLIQILYEFSDFIIMRRVSFETVLKLLYYKIPSLFVF 65
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+IP L I F L R E+ R+ GI + L ++ S+ L +
Sbjct: 66 VIPVSLLFAIIFSFGRLMRDGEIFAMRSSGIYFFTLALAPLLFSVFLSFVLWFFTYSLIP 125
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
LIQ++ + + ++ + KKI+ + +I ++
Sbjct: 126 ESNYRSNRLIQKYFFLNPAPVKGENIFF---HDEEGRYYYVKKIIEDKNIMQNVLVFDTS 182
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-----DKNSTTLNIPIKMDGFQKF 240
NK A+ A+ D + LK V + G +N+P
Sbjct: 183 SSNKYPIIYTAEEAVWNRDSLVLKNGVVHHLGDDAFVIWEGKFEEFKINLPQDFMYIFYR 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
E+ K++ K+ + + Y I + + L+ SV L R
Sbjct: 243 DRTPQEMPTSELRKRIEVYKKAGV-SARSYLVENYLRIAQSVAVPIFALMGFSVILLTGR 301
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ A+ I F Y I +S G+ + P +A +P I SLS+ +
Sbjct: 302 GGRLW-GTAFSIIIAFFYYGFNIIARSLGEYAVFSPFLSAWLPNITLGSLSLGV 354
>gi|332665471|ref|YP_004448259.1| permease YjgP/YjgQ family protein [Haliscomenobacter hydrossis DSM
1100]
gi|332334285|gb|AEE51386.1| permease YjgP/YjgQ family protein [Haliscomenobacter hydrossis DSM
1100]
Length = 365
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 62/360 (17%), Positives = 138/360 (38%), Gaps = 12/360 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K +L T + +L +++ ++D +E + E P + + + I
Sbjct: 6 KILDWYIIKKFLSTFFFTVLIFLMIAVILDFSEKVEKFIEEPITTREIVLQYYPSFMLWI 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
Q+ TL+ I + +SE++ G+S +L+ + G+ L + +L +
Sbjct: 66 GGQLWSVCTLIAVIFFTSRMAYSSEIMSIFNAGVSFNRLMRSYFFGAAFLTLLYLLCTHY 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I GEK D++ ++ D D + + ++ P +FIG ++ DF
Sbjct: 126 IMPVGEKYRQDIVHKYIDKSDDKGKTTNIHLFVA-PNTKVFIG--FYRKDDSTARDFRIE 182
Query: 183 TIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKMD 235
K +++ AD A K +L + + + D S + + +
Sbjct: 183 HF-KNQQLVSYTKADRAEYLPETRKWRLWDYSSHSFNGLKEDLKMHLAESKDTTLSLYPE 241
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F +S Q + + ++K + N+ + + + Y P+ + +T I +++
Sbjct: 242 DFVDYSSQQSMMTTPRLMKYIRQQNERGASNTRKYLFELYRRTADPVTIFILTFIGMAIA 301
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R +A GI G + + F + A +P ++ +++ ++
Sbjct: 302 SRKVR-GGFGFHLALGIGVGAIFVFLSKFTNVFALGQTIPVWLGAWLPNLVFAFVALRLI 360
>gi|317477038|ref|ZP_07936280.1| hypothetical protein HMPREF1016_03264 [Bacteroides eggerthii
1_2_48FAA]
gi|316906831|gb|EFV28543.1| hypothetical protein HMPREF1016_03264 [Bacteroides eggerthii
1_2_48FAA]
Length = 393
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 59/363 (16%), Positives = 120/363 (33%), Gaps = 20/363 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T ++ + + + V D NE ++ + +P
Sbjct: 35 LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWEAIIFDYYMNFIPY 94
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S ++L P++V + ++ + T + +
Sbjct: 95 FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVTTFCLGS 154
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G ++ ++ + I + ++ + F+
Sbjct: 155 YVIPKGSVTRLNFEDKYYKPRKSTTARNI----QLEVDSGVIAYIERFEDYSKTGYRFSL 210
Query: 182 ITIDKKNKII----HRKDADLAIIYNDKVKLKK--VVEYQYGRIPIDKNSTTLNI----P 231
K + D A ++ K +K + E R I K I P
Sbjct: 211 DKFKDKQLVSHLTARSITYDTATVH--KWTVKDYMIREMDGMRESIVKGEKMDTILFMEP 268
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ E S E I + +NI E +++ I + +TLI
Sbjct: 269 ADFLIMKNQQEMLTSPQLSEYINRQRQRGFANI---KEFEIEYHKRIAMSFASFILTLIG 325
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S + ++ + S F TI +F +G + P A IP +L ++
Sbjct: 326 VSLSSKKTKGGMGLHLGIGLGLS-FSYILFQTIASTFAVNGNVPPFIAVWIPNLLYAFIA 384
Query: 352 ILI 354
+
Sbjct: 385 FYL 387
>gi|148242360|ref|YP_001227517.1| permease [Synechococcus sp. RCC307]
gi|147850670|emb|CAK28164.1| Predicted permease [Synechococcus sp. RCC307]
Length = 403
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 53/362 (14%), Positives = 124/362 (34%), Gaps = 23/362 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
++ R+ L L+ + + + V L E+ ++ E + + R+P
Sbjct: 30 LPLMDRWLTGELLGPLLFGIAAFTAVTLSVGVLFELVRKVAE-AGLPMGVAVQVLFLRLP 88
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P TL+ ++ + L+ SEL R+IG++ ++ + P +V + L+ + T +
Sbjct: 89 GFLVLSFPMATLIATLLAYSRLSGGSELTALRSIGVATYRFVIPGLVLAGLMSVLTFVFN 148
Query: 121 NPIATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISN------PQQDIFIGAKKILP-E 172
+ + + G ++ + D +K I + + ++ I +
Sbjct: 149 DVLVPPANRAGYVMLHKSLGRSIDSEKGGNIIYPRYGRVTDGPKDNKERLIQLFYAKEFK 208
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAII--YNDKVKLK-----KVVEYQYGRIPIDKNS 225
+ D T I + + A+ A+ + + V + D N+
Sbjct: 209 DGKMMDVTLIDFSRAGQ-KQLLSAEEAVFMEGRGTWEFRRGSIINVADRGGRNTTADFNT 267
Query: 226 TTLNI---PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
+ P+ + K + + ++ + + + + P
Sbjct: 268 YYYPLGEGPLDLASLPKDVNVMSVAEANQALEIIEEAGDRK--AARKMRVRLQEKFSFPA 325
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ + LI AS+ + + F+ Y + + S G G L P +A
Sbjct: 326 ICLVFGLIGASLGSRPNTRTSRSQGFGISVLLIFVYYLLAFVFSSLGVKGTLTPFLSAWT 385
Query: 343 PV 344
PV
Sbjct: 386 PV 387
>gi|323436074|ref|ZP_01050240.2| predicted permease YjgP/YjgQ family [Dokdonia donghaensis MED134]
gi|321496389|gb|EAQ39255.2| predicted permease YjgP/YjgQ family [Dokdonia donghaensis MED134]
Length = 358
Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 66/361 (18%), Positives = 126/361 (34%), Gaps = 17/361 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K Y+ T + L+ + + +++L E +++ A+
Sbjct: 2 KILDWYIVKRYIGTFVTMLVLFIPIGIIVNLAEKIDKILAN-EVPFGEVALYYLNFTIYF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P + I L +E++ + G+S + L P+++G+ ++ ++
Sbjct: 61 ANLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGVSFTRFLRPYLIGATVVCAGAFVMGTY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A K + I ++ + + QI +I A P +FT
Sbjct: 121 LAPRANKGYNEFIFEYLKKKKNDRDTRDVYRQIDAGD---YIYASSFNPRTKRGRNFTWE 177
Query: 183 TIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGR-----IPIDKNSTTLNIPIK-M 234
+ NK+ ++ A + L + G I K TT I +
Sbjct: 178 HF-EGNKMTYKMSATQIRFNEEDTTYTLYGFKKRIIGEDGDVLIKQAKIDTTFAFDIDDL 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ +E + E I K S I R E +P+ +T+IA +V
Sbjct: 237 TPVEYIAETLNTPELREFIAKEKARGSSYI---SRYEVTLQKRYSLPVAAYILTIIAVAV 293
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S R I +A+GI F+ + + + P+ A P IL L+ +
Sbjct: 294 SA-MKRRGGMGINLAFGIVLAFVFIFFDKVFGTLAEQSDFPPLVAVWTPNILFAILAAYL 352
Query: 355 L 355
L
Sbjct: 353 L 353
>gi|149279360|ref|ZP_01885491.1| hypothetical protein PBAL39_13617 [Pedobacter sp. BAL39]
gi|149229886|gb|EDM35274.1| hypothetical protein PBAL39_13617 [Pedobacter sp. BAL39]
Length = 367
Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 63/367 (17%), Positives = 121/367 (32%), Gaps = 25/367 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ Y YL T LY L ++++ + DL+E + ++ A +P
Sbjct: 8 IKIIDWYIISKYLGTFLYTLTLFVVIIVIFDLSEKLDDFLSNNLTFWQVVSLYYAGSIPF 67
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + P I + I + +E+V + G+S + L P+ + + ++ +
Sbjct: 68 YVNMLSPLINFIAVIFFTAKMADQTEIVPILSGGVSFNRFLLPYFISASIIFAANLGANL 127
Query: 122 PIATSGEKIGIDLIQQW-KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + K N KSDI + +I + +N F+
Sbjct: 128 YVLPYTNTLKNTFENTYVKKNDPSSKSDIHMKL-----DARTYIYMRSFDNKNKTGAQFS 182
Query: 181 SITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDKNSTTLNI-------- 230
+ ++ + AD + KL + +
Sbjct: 183 LDNFNGD-EMTRKIVADEIKWDSLKRSWKLTNYSIRDIKGLKETMTNGAGKTKDTILDMR 241
Query: 231 PIKMDGFQKFSEQFASRSFYEIIK--KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
P + E +++ + IK K+ S N R + + PL +T
Sbjct: 242 PDDFSAYDNIFENLSNQELSDKIKKEKIRGSGIMNDLLFERYKRYLH-----PLSAYVLT 296
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
LI ++S R + + GI F K F G P+ A L+P I+
Sbjct: 297 LIGVALSSRKVR-GGVGLPLGIGILLSFTYIVFNQFAKMFSLKGEFPPLLAVLMPTIIFG 355
Query: 349 SLSILIL 355
L +L
Sbjct: 356 ILGFYLL 362
>gi|148265754|ref|YP_001232460.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
gi|146399254|gb|ABQ27887.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
Length = 389
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 52/364 (14%), Positives = 125/364 (34%), Gaps = 18/364 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L+ Y FK L + ++ + L + + ++ + +P
Sbjct: 1 MKKTLYLYIFKEIPPPFLLGVATFTFVLLMGRLLRLAEMVVTK-GVPLADVLRMVFYLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IP L+ ++ F L+ SE+ +A G+S++ LL P +++ + +
Sbjct: 60 SFLLVTIPMAFLLAILLAFGRLSGDSEITAMKASGVSLYGLLPPVFCFALIAYLAGAFIT 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
G L+ + + + S I ++ + I + +
Sbjct: 120 VYAVPWGNTSFKKLLVE---VVEARASLGIKEKIFNDDFPGLVIYTDRYNQQKQTMSGIL 176
Query: 181 SITIDKKNKIIHRKDADLAIIYND------KVKLKKVVEYQYGRIP----IDKNSTTLNI 230
+ A +I +D +++L ++ ++ + LNI
Sbjct: 177 IQDERDPLEPST-IYARSGVINSDPATKSIRLRLDNGSIHRTQGKTGYRLVEFRNYDLNI 235
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ + S E+ ++ S + + +++ +P + L+
Sbjct: 236 NLNQAAQTVNKNELD-MSLAELRANLA-SGRFDAKMMRDMRLEYHRRFSLPFACLIFALV 293
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ ++ RS + I Y +++ K+ G+ +L P+ A P +L +SL
Sbjct: 294 GMPLGIQNQRSGK-AAGFTMSIGLLLAYYIVLSAGKALGERELLSPLLAVWAPNLLFVSL 352
Query: 351 SILI 354
I +
Sbjct: 353 GIYL 356
>gi|330997889|ref|ZP_08321723.1| permease, YjgP/YjgQ family [Paraprevotella xylaniphila YIT 11841]
gi|329569493|gb|EGG51263.1| permease, YjgP/YjgQ family [Paraprevotella xylaniphila YIT 11841]
Length = 368
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 116/360 (32%), Gaps = 18/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K +L T + + + + V D NE ++ A VP
Sbjct: 11 LDVYLIKKFLGTYFFSIALIISIAVVFDFNENIDKFTTNHAPWKGIIFEYYANFVPYFSN 70
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
P + I L SE++ A G+S +L+ P+++ + ++ + T L+ +
Sbjct: 71 LFSPLFVFISVIFFTSKLAENSEIIAMMAAGMSFKRLMRPYMISAAIIAVMTFLLGAYVI 130
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G ++ +K + + + + + F+
Sbjct: 131 PKGSVTRLNFENTYKKKKRTEFAQNV----QLQVDTGVIAFIEHFDGRTKTGYHFSLDKF 186
Query: 185 DKKNKIIHRKDA--DLAIIYNDK--VKLKK--VVEYQYGRIPIDKNSTTLNI----PIKM 234
K + H A + +++ ++ + E + R I S +I P
Sbjct: 187 VNKKLVSHLTAASVSYDTLSDERYHWRINNYTLRELKGMREYISHGSRIDSIIAMEPSDF 246
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ E S E I K N+ E ++ P +T+I S+
Sbjct: 247 LLTRNQQETLTSPELKEYIVKQRARGSGNVKP---FEVEYQKRFATPFASFILTIIGLSL 303
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S R + + G+ T+ +F + P AA +P I+ ++ +
Sbjct: 304 SARK-RKGGMGLYLGIGLALSASYILFQTVSSTFAINADWPPALAAWLPNIIFAFIAFFL 362
>gi|171914738|ref|ZP_02930208.1| permease YjgP/YjgQ family protein [Verrucomicrobium spinosum DSM
4136]
Length = 576
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 64/369 (17%), Positives = 128/369 (34%), Gaps = 23/369 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY + +L+ ++ + L V+DL + E S ++ + +P I
Sbjct: 176 KILERYVMRSFLQPVMFCFIAFCTLWIVMDLLDNMQDFQEN-KISRAQIVMFYIKLIPFI 234
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ + ++RT+EL+ G S++ +L PF V + + +
Sbjct: 235 FVTVAPISLLLSTLYTLGRMSRTNELISMLGTGKSMFDVLKPFYVIACCASLLGMAANYH 294
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A L++ K+ K + + ++ F+G
Sbjct: 295 WAPVSAGNKEKLLENVKERIGKNFLVMGLMYRNQEDRRTWFVGQVPEDLRGDRMRRIEIR 354
Query: 183 TIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQY---------------GRIPIDKNS 225
D + +++ A A + D+ VE Y G ID
Sbjct: 355 QEDDQGRLVKGWFAKSAFWWPDRKVWSFYSGVEVTYKNGQVVAMQNFDAGGGHPRIDFEG 414
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
T P + + I+ S + + T ++ P +
Sbjct: 415 WT-ETPWILLSGTLVPDYLGVPDLISYIRGNSAYGQRKLAP---YLTHLFYRFTFPWQCL 470
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ L AA +S+ FSR ++ + F+L + + + GKS ++ P + +P +
Sbjct: 471 VVVLFAAPLSVVFSRRGLVG-GLSMAVIFFFVLMFMDNLFLNLGKSNVIPPFISVWLPHL 529
Query: 346 LTISLSILI 354
L S+ I +
Sbjct: 530 LLGSIGIYL 538
>gi|332879242|ref|ZP_08446939.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332682662|gb|EGJ55562.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 368
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 60/360 (16%), Positives = 121/360 (33%), Gaps = 18/360 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K +L T + + + + V D NE ++ A VP
Sbjct: 11 LDMYLIKKFLGTYFFSIALIISIAVVFDFNENIDKFTTNHAPWKGIIFEYYANFVPYFSN 70
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
P + I L SE++ A G+S +L+ P+++ + ++ + T L+ +
Sbjct: 71 LFSPLFVFISVIFFTSKLAENSEIIAMMAAGMSFKRLMRPYMISAAIIAVMTFLLGAYVI 130
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G ++ +K K+K++ +Q+ + + F+
Sbjct: 131 PKGSVTRLNFENIYK---KKKKTEFAQNVQLQVDTG-VIAFIEHFDGRTKTGYHFSLDKF 186
Query: 185 DKKNKIIHRKDA--DLAIIYNDK--VKLKK--VVEYQYGRIPIDKNSTTLNI----PIKM 234
K + H A + +++ ++ + E + R I S +I P
Sbjct: 187 VNKKLVSHLTAASVSYDTLSDERYHWRINNYTLRELKGMREYISHGSRIDSIIAMEPSDF 246
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ E S E I K N+ E ++ P +T+I S+
Sbjct: 247 LLTRNQQETLTSPELKEYIVKQRARGSGNVKP---FEVEYQKRFATPFASFILTIIGLSL 303
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S R + + G+ T+ +F + P AA +P I+ ++ +
Sbjct: 304 SARK-RKGGMGLYLGIGLALSASYILFQTVSSTFAINADWPPALAAWLPNIIFAFIAFFL 362
>gi|297171743|gb|ADI22735.1| predicted permeases [uncultured verrucomicrobium HF0500_27H16]
Length = 412
Score = 139 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 55/366 (15%), Positives = 120/366 (32%), Gaps = 20/366 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R+ +LK+ + L ++ +L + + E + P ++
Sbjct: 49 ITDRHLASEWLKSFGITTGAILGLFYIQNLYDNLGDLLEH-GAGAAEILQYYLILTPALL 107
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P LV + + +L+R E+ R++G S+W L+ + + LL + L+ N
Sbjct: 108 SPVLPLSVLVATLFSYGSLHRNQEITAMRSMGRSVWSLMRVNMFLAALLSVGLFLLGNGG 167
Query: 124 ATSGEKIGIDLIQQWKD---NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + ++ + + I + N + P H
Sbjct: 168 LSKSAEKSREFYEELMQPPFDPASAEVATIKHLTFENASSHRLWVMNRYDPSKHKGHGVY 227
Query: 181 SITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPIDKNSTT--------LNI 230
K R + A ++ + + + L
Sbjct: 228 LYLRYVSGKARERFTSRTAEFMPETATWVFREGRQVFFDEAGLSLRFVDFEELKMEGLES 287
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P+ + QK + R E+ S R +++ + P + L+
Sbjct: 288 PLTLLARQKKLSDLSLRELREL---AEVSQGGQGSEARRYGVRYHQALAGPFNCMLALLV 344
Query: 291 AASVSLEFSRSNQP-RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
++ +R N A GIF G + + + G+ GIL P A +P+ L
Sbjct: 345 GVPFAIAGTRVNPMVGATKAIGIFVG--YFLLGGASRMLGQQGILEPAVAGWLPMGLMAF 402
Query: 350 LSILIL 355
++ ++
Sbjct: 403 YALFLI 408
>gi|262277385|ref|ZP_06055178.1| putative permease, YjgP/YjgQ family [alpha proteobacterium HIMB114]
gi|262224488|gb|EEY74947.1| putative permease, YjgP/YjgQ family [alpha proteobacterium HIMB114]
Length = 365
Score = 139 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 74/363 (20%), Positives = 147/363 (40%), Gaps = 7/363 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQN--QMGELPNYSISRGAVLAATRV 59
P L +Y K + + + F + L+ + + Q E+ + + R +L +
Sbjct: 6 PRTLIKYLIKEFSFSLMIFTVIFSSLIILTTFIQEITFFQEKEVSDNFLLRMLLLTFIKS 65
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P +I FI L I + + +E+V G S+ + + S LGI +++
Sbjct: 66 PTLIINSSSFIFLFAGIFFYVKFMKNNEIVPISLSGFSMNFITLVPGIFSFFLGIVIIII 125
Query: 120 INPIATSGEKIGIDLIQQWKDNGDK-QKSDIIPWMQISNPQQDIFIGAKKILPENH-IWE 177
+PI++ K + + + N + S W++ I A K+ + +
Sbjct: 126 FSPISSELSKYYESIKKNYSKNDNLIVMSATGIWIKEKKNDNIYIIRADKLSGNDFAKLK 185
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ + T NK R + D II + +K+ I NS T I ++
Sbjct: 186 NISIYTF-SMNKFKERINGDNGIIVKNNLKITPA-NLVSDVRNISLNSYTYISKINLENI 243
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + S + + ++ K F +F+ + +P +L AM +++ +++
Sbjct: 244 KNYFVNADTFSIWSVKNALNDVRKMGYFG-EEIIIKFHKYLSLPFLLFAMIVLSTFFTIK 302
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + I GI +G ++Y + + GKSG L + + +PVIL SI IL+
Sbjct: 303 MNFTFNNFIYAFLGILTGIIVYFFYDLSIAVGKSGKLPLILSVWMPVILINVFSIYILIN 362
Query: 358 KED 360
ED
Sbjct: 363 NED 365
>gi|310778171|ref|YP_003966504.1| permease YjgP/YjgQ family protein [Ilyobacter polytropus DSM 2926]
gi|309747494|gb|ADO82156.1| permease YjgP/YjgQ family protein [Ilyobacter polytropus DSM 2926]
Length = 357
Score = 139 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 56/366 (15%), Positives = 131/366 (35%), Gaps = 17/366 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY K ++ + F + +F+ID+ + + S+ + + +P I
Sbjct: 2 KIIHRYILKE-MRMPIIFGISLFTFIFLIDIMVQMMENIIVKGVSLLDVVRILSFYLPPI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q IP + ++ + L TSE ++G+S+ ++ P + ++ + F +
Sbjct: 61 LSQTIPMGFFLGVMITYSKLTSTSESTAMNSMGMSLNSIIKPTFMLALGITAFVFFLQES 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + L + + ++ + D I K+ + E+
Sbjct: 121 IIPNSFVKLQQLTLKIAYEKPAFQLKENMYI---DEVDDYSIYIDKVGGDGS-AENILIF 176
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-----NSTTLNIPIKMDGF 237
+K N A A+ + + L+ Y +K + + I +
Sbjct: 177 KKEKDNSFPTVLTAKKAMWKDAAMILEDAEFYNLNPDGSEKLRGEFSRQKIPINSFFENV 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + S +++K+ S + + + IPL + + ++ S+
Sbjct: 237 KMKVSEIETMSVRQLLKE---SKDKDDEEKLPYIVEMNKKLAIPLSAIMLGILGVLFSVG 293
Query: 298 FSRSN-QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI-L 355
RS ++ G+ F+ + + G + P P + + L+I + L
Sbjct: 294 HHRSGKGVSYGISLGVI--FLYIASLNVGVVMANRGKISPFIGIWTPNFVLLGLTIYMYL 351
Query: 356 LQKEDG 361
L+K G
Sbjct: 352 LKKRRG 357
>gi|206900512|ref|YP_002251020.1| permease YjgP/YjgQ, putative [Dictyoglomus thermophilum H-6-12]
gi|206739615|gb|ACI18673.1| permease YjgP/YjgQ, putative [Dictyoglomus thermophilum H-6-12]
Length = 356
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 59/362 (16%), Positives = 129/362 (35%), Gaps = 20/362 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +YF + ++ LL ++ V L I + + + L T++P
Sbjct: 2 KIISKYFLQNFIPVFFVGLLLFTTILLVSPLFIIMDLVVARS-IPLKVAFELFLTKIPPY 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P + + V + E++ +A G SI L +V S + + V
Sbjct: 61 LTYTFPMAIFLAVVYVIGQFSEHGEIMAMKASGASIKYFLPAILVFSFSVQLIMFYVNEF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + L+ + +N Q + + + + F +K+ P+N +E+ I
Sbjct: 121 VAPKAYEREKFLLSKSYNNIAVQSRENVF-----FNENNNFYFFRKVDPKNKRFEEILLI 175
Query: 183 TIDKKNKIIHRKDADLAIIYN-DKVKLKKVVEYQ--------YGRIPIDKNSTTLNIPIK 233
+ ++ I A A Y + + P +
Sbjct: 176 ELLERGNIKLIIYAKKATWDEIKGWTFMDGEVYSLNKEGDMIFQGRFKEYKVVLDRNPYQ 235
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ K E+ + + I+ + + + +T+F+ I +P ++A
Sbjct: 236 LVPSSKPIEEMSIFEIIDQIRLLEGTG----LNLNNLKTEFHIRIALPFTCPIFAILALG 291
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ L R + + S F+ Y + +I +S K+GI+ A + I+ + + I
Sbjct: 292 LGLNMGR-GGRSLSFGLSVISIFVYYVLFSIGRSLAKAGIVSYFLGAWLGNIIFLIIGIY 350
Query: 354 IL 355
+L
Sbjct: 351 LL 352
>gi|121595376|ref|YP_987272.1| permease [Acidovorax sp. JS42]
gi|120607456|gb|ABM43196.1| permease YjgP/YjgQ family protein [Acidovorax sp. JS42]
Length = 355
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 52/334 (15%), Positives = 115/334 (34%), Gaps = 12/334 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L LL L+ V++L ++ + + + R+P + +
Sbjct: 8 YLRRRVGTQILVLLLVITALMQVLELLDVTTDVLKR-DQGFIGIVYYGLLRLPAELVMAL 66
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P L+ ++ N+ R E+ R G+S+ +LL + + +L + ++ + +
Sbjct: 67 PPAVLLGTLMALANMARNLEIATMRTAGLSMMRLLGYLLPLAAVLAVAQFVLSDHVLPPA 126
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
E L + W + + W S + + P+ D D +
Sbjct: 127 EN---GLKEWWSASAPADDTPTKRWAHTSGGTVSM----ESTSPDGRRLIDVRLYVRDDR 179
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQKFSEQF 244
I R A A + K V E+ YG +++ + ++ + +
Sbjct: 180 GLIQSRLTATEAQWDGQVWRFKGVNEFVYGDRRVERIQVAERAWDTNLRPEDVLRLDVAR 239
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ S + + ++ + H Y ++ Y PL + M L+A ++ R
Sbjct: 240 PNLSTAMLAEVIAGTRTGTQPHRY-YQSVLYRSYAAPLAIFVMLLLALPTAVSLPRGTGG 298
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+A + G I+ + G + P+
Sbjct: 299 GSRMAMALILGLGFLLCDGIVAALGLAARWPPLV 332
>gi|226946454|ref|YP_002801527.1| YjgP/YjgQ family permease [Azotobacter vinelandii DJ]
gi|226721381|gb|ACO80552.1| permease YjgP/YjgQ family [Azotobacter vinelandii DJ]
Length = 356
Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats.
Identities = 65/365 (17%), Positives = 137/365 (37%), Gaps = 20/365 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY L + L +DL + +G+ Y + + + +P
Sbjct: 3 ILERYLLGNLLLGFAAAAALLLPLFSTLDLVGELDDIGD-AGYRLGQALQVTLMTLPRRA 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ PFI L+ I L+ + EL + R G+S ++ ++ LL + +
Sbjct: 62 VELGPFIALLGGIAALGQLSMSQELSVLRTAGVSATRIGLTALLAGTLLAGGLGALDEFV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A+ ++ I L K + DK S W + Q + IG L +
Sbjct: 122 ASPLQQKAIKLRAYAKPDNDKDDS---IWAR--KDGQVVRIG---SLATGRVPNHLEIFR 173
Query: 184 IDKKNKIIHRKDADLAIIYNDK-VKLKKVV--EYQYGRIPIDK----NSTTLNIPIKMDG 236
D+ N++ AD A I +L V + +++ + ++D
Sbjct: 174 FDESNRLQEYILADRAEIQPGGLWQLHDVRLKRWSDEGESVERLERLEWRAILPDSRLDE 233
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
++R + + + + +I + E + + +P++ +AM L A +
Sbjct: 234 VTLPPASLSARQLRGYVHFLQNTGQPSI----QFEIALWQKLGVPILTLAMILFALPFTF 289
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
RS +A G G ++Y + S G+ L + L+P ++ + +++ ++
Sbjct: 290 APVRSTGLGSRLALGAVMGLLVYIGNESLVSLGQLLKLNAMLVGLLPALVLLGMALALVR 349
Query: 357 QKEDG 361
+ + G
Sbjct: 350 RFDRG 354
>gi|218131075|ref|ZP_03459879.1| hypothetical protein BACEGG_02679 [Bacteroides eggerthii DSM 20697]
gi|217986779|gb|EEC53112.1| hypothetical protein BACEGG_02679 [Bacteroides eggerthii DSM 20697]
Length = 380
Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats.
Identities = 59/363 (16%), Positives = 120/363 (33%), Gaps = 20/363 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T ++ + + + V D NE ++ + +P
Sbjct: 22 LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWEAIIFDYYMNFIPY 81
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S ++L P++V + ++ + T + +
Sbjct: 82 FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVTTFCLGS 141
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G ++ ++ + I + ++ + F+
Sbjct: 142 YVIPKGSVTRLNFEDKYYKPRKSTTARNI----QLEVDSGVIAYIERFEDYSKTGYRFSL 197
Query: 182 ITIDKKNKII----HRKDADLAIIYNDKVKLKK--VVEYQYGRIPIDKNSTTLNI----P 231
K + D A ++ K +K + E R I K I P
Sbjct: 198 DKFKDKQLVSHLTARSITYDTATVH--KWTVKDYMIREMDGMRESIVKGEKMDTILFMEP 255
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ E S E I + +NI E +++ I + +TLI
Sbjct: 256 ADFLIMKNQQEMLTSPQLSEYINRQRQRGFANI---KEFEIEYHKRIAMSFASFILTLIG 312
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S + ++ + S F TI +F +G + P A IP +L ++
Sbjct: 313 VSLSSKKTKGGMGLHLGIGLGLS-FSYILFQTIASTFAVNGNVPPFIAVWIPNLLYAFIA 371
Query: 352 ILI 354
+
Sbjct: 372 FYL 374
>gi|239616611|ref|YP_002939933.1| permease YjgP/YjgQ family protein [Kosmotoga olearia TBF 19.5.1]
gi|239505442|gb|ACR78929.1| permease YjgP/YjgQ family protein [Kosmotoga olearia TBF 19.5.1]
Length = 1466
Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats.
Identities = 65/363 (17%), Positives = 131/363 (36%), Gaps = 22/363 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y FK + L G +I V + +L + + I + +L +P I
Sbjct: 3 ILIKYIFKQSMGAFFIGLGGFLIFVSL-ELLYQLSDLIVRYKVGIDKLFLLIYYNLPYFI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IP L+ + +EL+ + GI++ ++ PFV+ ++LL T L + I
Sbjct: 62 VLGIPVGVLLAIFWTLSRMQSDNELIALQTHGITLKTVVLPFVIFAVLLSGITYLFNDYI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++ + +M+ + ++ KKI PE + +
Sbjct: 122 VPYANRKAYEAQARFIYRRPEVTLKENAFMEDGKGR---YLYIKKIDPETGELKKI--LL 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDGFQ 238
D A A DK + ++ + S L+ + +
Sbjct: 177 YDLSGGKTRVTSAKSATKEGDKWIMHDGRVFELDSKGFLTFDMSFESLELDFGSDIQEYI 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S+ + E+ KK++ ++ + + L + + +I +SL F
Sbjct: 237 RQSKSPREMTSAELKKKIASFSRLGVR-TSSLMVALQEKYSLSLAPLVIVMIGVPLSLIF 295
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIIT----IMKSFGKSGILLPVAAALIPVILTISLS-IL 353
+ ++ + + F+L I + + GK +L P A IP I+ I
Sbjct: 296 NLRSKS-----WSVILTFILIVIYQGSGAWLSAMGKEDLLNPAYAPWIPNIIFAITGIIT 350
Query: 354 ILL 356
LL
Sbjct: 351 YLL 353
>gi|318041350|ref|ZP_07973306.1| permease [Synechococcus sp. CB0101]
Length = 388
Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats.
Identities = 51/369 (13%), Positives = 109/369 (29%), Gaps = 31/369 (8%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ R+ L L+ + + + + + + R+P
Sbjct: 12 PLMDRWLSSELLGPLLFGVAAFTAVSLSVGVVFELVRKVAEAGLPPLVAMQVLGLRLPGF 71
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P TL+ ++ F L+ +SEL R+IG+ W+++ P +V + L+ + T + +
Sbjct: 72 LVLSFPMATLMATLLAFSRLSSSSELTALRSIGVPTWRMVVPALVVAALMTVLTFVFNDV 131
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWM---------------QISNPQQDIFIGAK 167
I S D + + + N +F ++
Sbjct: 132 IVPSANLAAADTLDAALGRSVAAERGDNVVYSRYAQLTSIDEKGRERTGNDLAQLF-YSR 190
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNS 225
+ + T + K A I + + + + S
Sbjct: 191 RFREG--KMYEVTLLDFTKAGH-QQLLIAKTGIWNDARSMWEFRAGRIVDIDSANNRTTS 247
Query: 226 TTL--------NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
P+ + + Q + + + R +
Sbjct: 248 ADFDRYFYPFTKAPLDVGKLPSDAAQMTVAQAWRAEALLEQAGDRK--EARRLRVRIQEK 305
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
P + + LI +S+ + + + F Y + I S G G LLP
Sbjct: 306 FAFPAICLVFGLIGSSLGVRPNARTSRSQGFGISVLLIFGYYLMSFIFSSLGIKGTLLPF 365
Query: 338 AAALIPVIL 346
AA +PV +
Sbjct: 366 FAAWMPVFI 374
>gi|329954892|ref|ZP_08295909.1| permease, YjgP/YjgQ family [Bacteroides clarus YIT 12056]
gi|328526996|gb|EGF54007.1| permease, YjgP/YjgQ family [Bacteroides clarus YIT 12056]
Length = 380
Score = 138 bits (349), Expect = 9e-31, Method: Composition-based stats.
Identities = 59/362 (16%), Positives = 121/362 (33%), Gaps = 18/362 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T ++ + + + V D NE ++ + +P
Sbjct: 22 LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWKAIIFDYYMNFIPY 81
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S ++L P++V + ++ I T + +
Sbjct: 82 FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAITTFCLGS 141
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G ++ ++ + I + ++ + F+
Sbjct: 142 YVIPKGSVTRLNFEDKYYKPRKSTTARNI----QLEVDSGVIAYIERFEDYSKTGYRFSL 197
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS----TTLNI-----PI 232
K +++ A V KV +Y + + S L+ P
Sbjct: 198 DKF-KDKQLVSHLTARSITYDTAAVHKWKVKDYMIREMDGMRESIVKGERLDTILFMEPA 256
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ E S E I + +NI E +++ I + +TLI
Sbjct: 257 DFLIMKNQQEMLTSPQLSEYIDRQRQRGFANI---KEFEIEYHKRIAMSFASFILTLIGV 313
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S+S + ++ + S F TI +F +G + PV A IP +L ++
Sbjct: 314 SLSSKKTKGGMGLHLGIGLGLS-FSYILFQTIASTFAVNGNVPPVIAVWIPNLLYAFIAF 372
Query: 353 LI 354
+
Sbjct: 373 YL 374
>gi|153004269|ref|YP_001378594.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
gi|152027842|gb|ABS25610.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
Length = 360
Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 53/363 (14%), Positives = 128/363 (35%), Gaps = 15/363 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL+ Y + L + L G + + +D + L + +++
Sbjct: 2 ILFGYVARRTLNAFVGALAGVVAIFLAVDFVDNSAAFTGPGWAPA--VLELYVNKAAVVV 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+Q+ P ++ + RT E RA+G+ W+L P V ++L G +LV +
Sbjct: 60 RQVAPAAMILGAGIAVSTFRRTREYTAMRAVGLGPWRLAVPVVAVTLLAGGALLLVHDLW 119
Query: 124 ATSGEKIGIDLIQ-----QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ ++ + + W + + PE
Sbjct: 120 GVEAAQRAEEIQALRFGRGGDRRRFEAAREPKRWFR--GGDGRRVYHLRGTSPEGGFAH- 176
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GRIPIDKN-STTLNIPIKM 234
T + + + +++ R DA+ D+ L+ V + + G + +++ S + P
Sbjct: 177 VTVLEVSEAFRLVRRVDAERMRPEGDRWLLEHVEDRTFLPDGTVRVERAASRRYDFPEPP 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D F + + ++ ++ + + + Y + P V ++A ++
Sbjct: 237 DAFAVVPGRPTQMRWQTLLSQIGI-RRRLGLPVAELQLERYNRLAYPFAGVPGAMLALAL 295
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+L +R + + + + + + G SG + P AA P ++ + + L
Sbjct: 296 ALRRNRKGHIAAALVESVGVSLLFWGTQGVTWAMGLSGHVAPWVAAWAPNLVFLVVGALA 355
Query: 355 LLQ 357
+ +
Sbjct: 356 VRR 358
>gi|153806356|ref|ZP_01959024.1| hypothetical protein BACCAC_00617 [Bacteroides caccae ATCC 43185]
gi|149131033|gb|EDM22239.1| hypothetical protein BACCAC_00617 [Bacteroides caccae ATCC 43185]
Length = 365
Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 58/363 (15%), Positives = 122/363 (33%), Gaps = 20/363 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T ++ + + + V D NE +++ E +P
Sbjct: 7 IKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWSKIIFEYYMNFIPY 66
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S +++ P+++ + ++ + T ++ +
Sbjct: 67 FSNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALTTFMLSS 126
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G ++ ++ + + + + F+
Sbjct: 127 YVIPKGSVTRLNFEDRYIKPKKQNTARNV----QLEVDSGVIAYIDNYNNAMKTGNRFSL 182
Query: 182 ITIDKKNKII----HRKDADLAIIYNDKVKLKK--VVEYQYGRIPIDKNSTTLNI----P 231
K + R D A ++ K + V E + I K +I P
Sbjct: 183 DKFVDKKLVSHLTARRITYDTATVH--KWTIHDYMVRELDGLKEKITKGDKIDSIINMEP 240
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ E S + I+K +NI E +++ I + +T+I
Sbjct: 241 SDFLIMKNQQEMLTSPQLSDYIEKQKRRGFANI---KEFEIEYHKRIAMSFASFILTIIG 297
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S ++ + S F TI +F +G + PV A IP IL ++
Sbjct: 298 VSLSSRKTKGGMGLHLGIGLGLS-FSYILFQTITSTFAINGNVPPVIAVWIPNILYAGIA 356
Query: 352 ILI 354
+
Sbjct: 357 FFL 359
>gi|167763060|ref|ZP_02435187.1| hypothetical protein BACSTE_01426 [Bacteroides stercoris ATCC
43183]
gi|167699400|gb|EDS15979.1| hypothetical protein BACSTE_01426 [Bacteroides stercoris ATCC
43183]
Length = 380
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/362 (16%), Positives = 121/362 (33%), Gaps = 18/362 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T ++ + + + V D NE ++ + +P
Sbjct: 22 LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWQAIIFDYYMNFIPY 81
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S ++L P++V + ++ I T + +
Sbjct: 82 FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAITTFCLGS 141
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G ++ ++ + I + ++ + F+
Sbjct: 142 YVIPKGSVTRLNFEDKYYKPRKSTTARNI----QLEVDSGVIAYIERFEDYSKTGYRFSL 197
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS----TTLNI-----PI 232
K +++ A V KV +Y + + S L+ P
Sbjct: 198 DKF-KDKQLVSHLTARSITYDTAAVHKWKVKDYMIREMDGMRESIVKGERLDTILFMEPA 256
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ E S E I + +NI E +++ I + +TLI
Sbjct: 257 DFLIMKNQQEMLTSPQLSEYIDRQRQRGFANI---KEFEIEYHKRIAMSFASFILTLIGV 313
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S+S + ++ + S F TI +F +G + PV A IP +L ++
Sbjct: 314 SLSSKKTKGGMGLHLGIGLGLS-FSYILFQTIASTFAVNGNVPPVIAVWIPNLLYAFIAF 372
Query: 353 LI 354
+
Sbjct: 373 YL 374
>gi|221211523|ref|ZP_03584502.1| putative membrane protein [Burkholderia multivorans CGD1]
gi|221168884|gb|EEE01352.1| putative membrane protein [Burkholderia multivorans CGD1]
Length = 326
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 54/321 (16%), Positives = 105/321 (32%), Gaps = 28/321 (8%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF + T ++ L L F DL N +G NY + A + P +I
Sbjct: 6 KYFARQIYVTFIFILFAFSGLFFFFDLISELNSVGH-GNYKFGYAVLRVALQTPSRFYEI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I VF + SE I R G++ Q L + + L I T L+ +
Sbjct: 65 IPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEFVGPY 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWM------QISNPQQDIFIGAKKILPENHIWEDFT 180
+++ + Q W+ + + Q F+ + P++ I +
Sbjct: 125 ADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLAPDSTI-SNVR 183
Query: 181 SITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQY-------GRIP-----------I 221
D K ++ + + A LK V E + G+ P +
Sbjct: 184 IYEFDAKFQLKNVRIAQTGRYEPPGHWLLKGVTETELTPIQPIAGQAPDALNPVYRSQQV 243
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
L + S + + + + N R + + ++ P
Sbjct: 244 SLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHL-RENHQDTQRYDIALWRKLLYP 302
Query: 282 LMLVAMTLIAASVSLEFSRSN 302
+ M +++ + +R+
Sbjct: 303 FAVFVMLVLSLPFAYLHTRAG 323
>gi|71891829|ref|YP_277558.1| putative transmembrane protein, transport [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|71795935|gb|AAZ40686.1| putative transmembrane protein, transport [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 357
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/337 (17%), Positives = 119/337 (35%), Gaps = 20/337 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y K + +T L + L VI L + ++GE N+S + +P
Sbjct: 1 MYNILNYYIVKTVISSTTTVFLVLLSLSSVIKLIDELRKIGE-GNHSFFDVIIYMILSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P TL+ ++ L +E + + G S Q+ + S+ + + +++
Sbjct: 60 KDFELFFPIATLLGGLLGLCMLEVHNEFIAMQISGFSRLQITLSVIKASVPVLLCSIISN 119
Query: 121 NPIATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
I + EKI Q D W N F+ + ++ N +
Sbjct: 120 EWIVPNSEKIMCMYRNQSQHDASLLSIKIKNLWFIDKND----FVCVENVIAYNELL-GV 174
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR--------IPIDKNSTTLNIP 231
+++ K+ + A+ + L V E + IP K + L P
Sbjct: 175 KLYNFNEERKLKKICYIERAVFVDKVWHLINVNELDISQKTSVVNKNIPHSKWNAEL-TP 233
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
++ + Y K + +++ + + F+ I+ P+ MT++A
Sbjct: 234 YRLSMMITHPNFLSISKLYHCAKYFNRIGQNSKY----YQVIFWKKILSPISGSVMTIMA 289
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
+ + + I + G +GF+ Y + I
Sbjct: 290 LAFTFGPLYKKKIGIRLFVGSIAGFLFYILNQIFGIL 326
>gi|330751983|emb|CBL80496.1| predicted permease YjgP/YjgQ [uncultured Polaribacter sp.]
Length = 363
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 62/364 (17%), Positives = 146/364 (40%), Gaps = 14/364 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR-VPL 61
I+ Y K +L T L+ LL + + ID++E + E PN ++ +
Sbjct: 2 KIIDWYILKRFLVTFLFTLLILIPIAIAIDVSEKIDNFLEHPNLGLNEVLNDYYLNFIIY 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+P + I+ L+ +E++ +S + + P+ +G+ L+ I ++ + +
Sbjct: 62 YTNTFMPLALFIAVILFTSKLSNNTEIIAITNAKVSFTRFMYPYFIGATLITILSLGMNH 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + K+ +++ +N ++ + +I + EN++ DF S
Sbjct: 122 YVVPNSSKVRKAFEKKYINNSKQKNALKYVSDFSLQLTDSTYIFIRSFNTENNVGNDFNS 181
Query: 182 ITIDKKNKIIHRKDADL-------AIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-IPIK 233
T + ++I + AD +I ++ + + V + + K T N P
Sbjct: 182 ETYNGL-ELISKLSADRLSYNNKDSIFTLNRWRKRLVYKDRDSIFSGSKMDTVFNFAPKD 240
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ F+++ S E++ ++ S K + + + Y +P+ +T+IA +
Sbjct: 241 LIYKSAFAQEMPS---NELVAFINISKKRGVKNLNAYLVELYKRSSLPIASYILTIIAVA 297
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ R + +A G+ F+ + + + G + +A IP IL ++I
Sbjct: 298 LAFRK-RRGGTGVNLAVGVGIMFLYVFFMKVGEVLGSVAGVNSLAYVWIPNILFGLIAIY 356
Query: 354 ILLQ 357
+
Sbjct: 357 LYFH 360
>gi|300905894|ref|ZP_07123627.1| hypothetical protein HMPREF9536_03886 [Escherichia coli MS 84-1]
gi|301304160|ref|ZP_07210276.1| hypothetical protein HMPREF9347_02760 [Escherichia coli MS 124-1]
gi|300402363|gb|EFJ85901.1| hypothetical protein HMPREF9536_03886 [Escherichia coli MS 84-1]
gi|300840573|gb|EFK68333.1| hypothetical protein HMPREF9347_02760 [Escherichia coli MS 124-1]
gi|315256878|gb|EFU36846.1| putative permease [Escherichia coli MS 85-1]
Length = 344
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 126/360 (35%), Gaps = 33/360 (9%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPIDK----NSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIKDDKTWVLHGVNHKKWLNGKETLETLDNLAWQSAFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ F+ R I + + + P++ +AM L+A
Sbjct: 236 EELSMPGNTFSVRQLNHYIHYLQETGQ-------------------PILTLAMILLAVPF 276
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ RS +A G+ G + + IM + G L AL + + +++ +
Sbjct: 277 TFTAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSL 336
>gi|320088912|emb|CBY98670.1| Lipopolysaccharide export system permease protein lptG [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
Length = 220
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 38/226 (16%), Positives = 79/226 (34%), Gaps = 18/226 (7%)
Query: 142 GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII 201
G + W + + F+ +++ + + + + ++ + A A
Sbjct: 3 GSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELAGISIYAFNDQRRLQSVRYAASAKF 57
Query: 202 YNDK--VKLKKVVEYQYGRIPIDKNSTTLN-------IPIKMDGFQKFSEQFASRSFYEI 252
+ +L +V E S T++ P K+ + + +
Sbjct: 58 DPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNY 117
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
+K + S + R + + I PL + M L+A S RS + V GI
Sbjct: 118 VKYLKSSGQ----DAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGI 173
Query: 313 FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
GF+ Y + I + P+ AL+P +S+ ++L+K
Sbjct: 174 SFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 219
>gi|118602882|ref|YP_904097.1| permease YjgP/YjgQ family protein [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
gi|118567821|gb|ABL02626.1| permease YjgP/YjgQ family protein [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
Length = 360
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 67/366 (18%), Positives = 144/366 (39%), Gaps = 21/366 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K T +L + + + E +G+ NY++ + +P +
Sbjct: 2 KILDRYIVKTMAFYTSAVMLVWLGIYAFFNFLEEVTFIGQ-ANYTVFEVTKYVISDIPAV 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I L+ +++ +L TS+LV+ R+ G+SI Q+ N V +++ + +
Sbjct: 61 VYSYSSVIILLGSLLALGHLASTSQLVVIRSAGVSIMQISNIVVRAALMFIAIVIFIGEL 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + L + K+ W++ ++FI KK + ++D T I
Sbjct: 121 VTPITIEYAESLRAKALGENITFKNQQGFWLK----DSELFIHVKK-NFDGKSFQDVTLI 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG---------RIPIDKNSTTLNIPIK 233
+ + + +D AI D ++L + + YQ+G +K S ++ K
Sbjct: 176 KLRAPDTLDSIVHSDSAISNGDNLELSQSIHYQFGKDGNLTTFSENNFEKYSVQVSFNKK 235
Query: 234 M-DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + +K + ++ Y+ I+ ++ ++ + E + Y ++ P+ L+AM L +
Sbjct: 236 LIENLKKDPRELSTWHLYQQIRFLTINHLAADI----FEVEIYKRLMKPITLIAMILFSM 291
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
R + G+ I +A IP +L + + +
Sbjct: 292 LFVFGSLRDASLGKNIFLGLMMSLFFELASRIGGVLSLRFDYNHFLSASIPTLL-MLVFV 350
Query: 353 LILLQK 358
LL+K
Sbjct: 351 WALLKK 356
>gi|237713241|ref|ZP_04543722.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262406619|ref|ZP_06083168.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294646169|ref|ZP_06723825.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
gi|294807861|ref|ZP_06766643.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
gi|298484045|ref|ZP_07002214.1| membrane protein [Bacteroides sp. D22]
gi|229446708|gb|EEO52499.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262355322|gb|EEZ04413.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292638498|gb|EFF56860.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
gi|294444923|gb|EFG13608.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
gi|295084257|emb|CBK65780.1| Predicted permeases [Bacteroides xylanisolvens XB1A]
gi|298269826|gb|EFI11418.1| membrane protein [Bacteroides sp. D22]
Length = 365
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 57/363 (15%), Positives = 119/363 (32%), Gaps = 20/363 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T ++ + + + V D NE +++ E +P
Sbjct: 7 IKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWDKIIFEYYMNFIPY 66
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S +++ P+++ + ++ + T + +
Sbjct: 67 FSNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALTTFTLSS 126
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G ++ ++ + + + F+
Sbjct: 127 YVIPKGSVTRLNFEDRYIKPKKQNSVSNV----QLEVDSGVIAYIDNYNNAMKTGNRFSL 182
Query: 182 ITIDKKNKII----HRKDADLAIIYNDKVKLKK--VVEYQYGRIPIDKNSTTLNI----P 231
K + R D A ++ K + V E + I K +I P
Sbjct: 183 DKFVDKKLVSHLTARRITYDTATVH--KWTIHDYMVRELDGLKEKITKGDRIDSIINMEP 240
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ E S + I+K +NI E +++ I + +T+I
Sbjct: 241 SDFLIMKNQQEMLTSPELSDYIEKQKRRGFANI---KEFEIEYHKRIAMSFASFILTIIG 297
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S ++ + S F TI +F +G + P A IP IL ++
Sbjct: 298 VSLSSRKTKGGMGLHLGIGLGLS-FSYILFQTITSTFAVNGNVPPAIAVWIPNILYAGIA 356
Query: 352 ILI 354
+
Sbjct: 357 FFL 359
>gi|296125162|ref|YP_003632414.1| permease YjgP/YjgQ family protein [Brachyspira murdochii DSM 12563]
gi|296016978|gb|ADG70215.1| permease YjgP/YjgQ family protein [Brachyspira murdochii DSM 12563]
Length = 356
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 72/352 (20%), Positives = 130/352 (36%), Gaps = 14/352 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K +L LL ++LV + DL+ + E P I+ R P
Sbjct: 4 LNAYLLKEFLSFFFGSLLLFVVLVTIADLSSRLSFYTEHPEL-INYFITYHLARAPHNTY 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I P + + V + E++ GIS+++ P V I+L + V +A
Sbjct: 63 YIFPVALMFASTYVLGTFVKNKEMLAIENSGISLFKFSMPMFVIVIMLCLILVFFWQFVA 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
K+ + G+KQ S PW FI + + + +
Sbjct: 123 APLNKVSFAANDAMR--GNKQASKSGPWQLFGGNNYLYFI--DTYFYQEQYMTNTILLKM 178
Query: 185 DKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMDGFQ 238
+ I R + ND K +K + + + N+ L++ + + F
Sbjct: 179 NDDGGIKFRISSPYIQWNNDDKKWYVKNGILTTFSENKEIEVKEINNYPLDVLERPEHFY 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S S E + + N+ + R ET ++ I + L+A+ S +F
Sbjct: 239 GRP-LLDSMSLTEEAHIIKLQKEVNM-NTSRLETDLHYRISYCFSGFIIVLLASLFS-KF 295
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
S + + + I + Y+I+ I +S G++G + P AA +P I+ L
Sbjct: 296 STQSVLVVSLVMVIIVALLYYSILMIFRSMGEAGNMNPFIAAWMPNIIFAIL 347
>gi|257126590|ref|YP_003164704.1| permease YjgP/YjgQ family protein [Leptotrichia buccalis C-1013-b]
gi|257050529|gb|ACV39713.1| permease YjgP/YjgQ family protein [Leptotrichia buccalis C-1013-b]
Length = 358
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 53/354 (14%), Positives = 129/354 (36%), Gaps = 9/354 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y Y+K+ + ++ ++ + + + + + S +P I+
Sbjct: 4 LDKYIIVNYVKSFILGMMMFFLIFLLAESITLTGWLMD-GKLKGSEALKYLRYGIPEIVT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
P L+ +++ + + E+ + GIS ++ ++ S L+ + +
Sbjct: 63 NTAPLGVLLGSLLCISKMAKQLEVAAMKTSGISFARVALFPILFSALVSLGVFWLNYDYL 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
DL DN + +S+ + + + N T +
Sbjct: 123 GRANTKKEDLKTLKIDNKEPVRSEKDFVF--VKIDKRTVLFSGHANKNNGTMNYVTILKF 180
Query: 185 DKKNKIIHRK-DADLAIIYN--DKVKLKKVVEYQYGR-IPIDKNSTTLNIPIKMDGFQKF 240
+ K+I + A A I ++ K + EY + ++ M+
Sbjct: 181 ENGFKVIRKMYTASFAKINPKTNEWTFKDLKEYDSKTNVTKPFDTKKFKFVASMEDVLAS 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + + E+ +K + + + +FY+ I L + M+LI S+ + R
Sbjct: 241 AVKAKNLTMPELREKTVYFTR-VGADSLNLRIEFYYRISFALSSLVMSLIGLSLGSRYVR 299
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + G+ Y + TI++S SG + A +P+I+ + + I +
Sbjct: 300 -GGAAVNIGLSVIIGYAYYGVSTILRSMAVSGTVPIYVACFVPLIIFLVVGIKL 352
>gi|300718280|ref|YP_003743083.1| permease [Erwinia billingiae Eb661]
gi|299064116|emb|CAX61236.1| Predicted permease [Erwinia billingiae Eb661]
Length = 361
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 49/333 (14%), Positives = 115/333 (34%), Gaps = 16/333 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I RY + + L +L + + Y ++ ++ +P +
Sbjct: 3 IFSRYLMRNIFIGFAAAAGLLIPLFTTFNLINELDDVAP-GGYRWTQALLVVVMTLPRSL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ PFI L+ IV L+++ EL R G SI ++ +++ + V +
Sbjct: 62 VDLAPFIALLGGIVGLGQLSKSLELTAIRTAGFSISRIARVMFCAGLVMTLTLGAVDEWV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A ++ + + + SD + + + + + L + +
Sbjct: 122 AAPLQQRALQIKNVAMAKA-ESDSDAGNALWARSQDDFVTV---QSLDNRNQPVGIEIFS 177
Query: 184 IDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDKNST------TLNIPIKMDG 236
+ A A I L V E ++ + N+ +L +
Sbjct: 178 WQPDLTLKSYIFAQSATIAGKGMWTLHNVTEKRWDKQQETVNNLPEMQWHSLFSGEDLKR 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+E F++R + I + + + + E+ + P++++AM L+A +
Sbjct: 238 LTLPAESFSARQLADYIVYLHKTGQ----PSLEYESALWQKAGRPILILAMILLAVPFTF 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
R+ +A G+ G + + + I+ + G
Sbjct: 294 STPRAPGLGSRLALGVIVGLVTWIVYQIVLNLG 326
>gi|297172254|gb|ADI23232.1| predicted permeases [uncultured nuHF2 cluster bacterium
HF0770_13K08]
Length = 351
Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 127/360 (35%), Gaps = 18/360 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y + + + FL +++ V + + S + A +PL
Sbjct: 3 FKIISKYIASEFNRYFMLFLGAFVLMSLVGNFFGNLADVFT-DWQSFLKFLQETALLLPL 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+++ IIP L+ I + +LN+ +EL+ R+ GI W+L P + S L+ F N
Sbjct: 62 LLELIIPITVLLATIATYSSLNKNAELLAIRSSGIGGWRLAFPVLAVSALIASFAYFSQN 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ T + + + +P + +Q I+ + N TS
Sbjct: 122 YMYTWMHQTWVKQENSAR----------LPPLWKVGEEQSIYYFGNR--QHNGRISSITS 169
Query: 182 ITIDK-KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI---DKNSTTLNIPIKMDGF 237
+ +++ R + N+ + +Y + + +
Sbjct: 170 FNWKQIPFQLLGRTAIERGEQQNNSWIFHDIQKYIFQDENLRLEHVEQWRIETEKLPTVP 229
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ ++ + + +S R + P + M LI +S
Sbjct: 230 FDIPISPHHQPLLDLYE-NTLKLQSEGQDVTRYWVAIFQKTAYPFQIFIMVLIGLGLSAS 288
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
++R +A G + + + I + G +G++ P AA I+ ++L++ +L
Sbjct: 289 YNRRGMAAESLAISCLLGILFWILNQITMAVGGAGLIFPFFAAWSGNIIFLALALWLLSY 348
>gi|172036942|ref|YP_001803443.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
gi|171698396|gb|ACB51377.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
Length = 394
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 135/361 (37%), Gaps = 24/361 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY F L L+ + L + + L ++ ++ E +S + ++P
Sbjct: 22 IMDRYLFIELLLPFLFGMGIFTSLGLSIGTLFDLVRRVTE-SGLMLSVAMKILVLKMPGF 80
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ ++ + L+ SE++ R++G+S+++L+ P ++ +++ +V +
Sbjct: 81 VSLAFPMAMLLAALMAYSRLSSDSEIIALRSLGVSVYRLIIPVILFGLVVTGCAFIVNDW 140
Query: 123 IATSGEKIGIDLIQQ---WKDNGDKQKSDIIPWMQ--ISNPQQDIFIGAKKILPE---NH 174
IA + +Q+ + K+++ + P + Q + + + E
Sbjct: 141 IAPAATHEAAVTLQRAVNQERPDFKERNIVYPEYKTVQEEDGQQVTVLTRLFYAEEYNGD 200
Query: 175 IWEDFTSI--TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTT 227
+ T + T + N+I+ + A I ++ Y R +
Sbjct: 201 KMQGLTILDRTQEGVNQIVTSESA-TWNISSNTWDFFNGTIYLIAPDGSYRNIVRFQHQQ 259
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVA 286
L +P + F + + + + S R + + +P + +
Sbjct: 260 LALPRAPLDLANRRQNFTEMTIAQTQEYLKAMQLSGNEKRVRKVKVRLQEKYAMPFVCLI 319
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSG--FMLYTIITIMKSFGKSGILLPVAAALIPV 344
++ A++ + ++G+ G F Y + + S G G+L P A +P
Sbjct: 320 FGVVGAAIGVRPQ---NTNKATSFGVCVGLIFGYYLLAFMSTSLGIWGVLTPFLGAWLPN 376
Query: 345 I 345
I
Sbjct: 377 I 377
>gi|89891008|ref|ZP_01202516.1| putative permease, YjgP/YjgQ family [Flavobacteria bacterium BBFL7]
gi|89516652|gb|EAS19311.1| putative permease, YjgP/YjgQ family [Flavobacteria bacterium BBFL7]
Length = 357
Score = 136 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 50/359 (13%), Positives = 129/359 (35%), Gaps = 11/359 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL RY + YL L L + ++ + + E ++ + + +
Sbjct: 1 MLKILDRYILRQYLGAFLLLLCLFIPIMITVHIAEKIGKILSK-DIPFTEVMMYLLDFTI 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ P + + L +E+V + G+S + L P+++G++L+ + ++
Sbjct: 60 YFSNFLFPIFLFISTMFFTSKLANNTEIVAFLSSGVSYNRFLRPYIIGAVLVCVTALVFS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ + +++++ + +IS+ ++ DFT
Sbjct: 120 TVFVPDAAAGFNEFQFKYFKSEKERQTNNVF-RRISDDD---YVYVSNYNSGRKTGYDFT 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY---QYGRIPIDKNSTTLNIPIKMDGF 237
+ N++ ++ A+ + L + + + G I K + +D
Sbjct: 176 LEHFN-GNELEYKIYAERIAFKDSVYTLSRYKKRVLQENGEILTTKAKLDTILNFDIDEL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
S + S+ +++ + + + + IP+ + T+IA +VS
Sbjct: 235 TPSSYVAETLSYQKLLDFIETEESRGNGNMNVYYVEKHKRTSIPVSALIFTIIAVAVSSV 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK-SGILLPVAAALIPVILTISLSILIL 355
R + +A G+ + + + + S P A P I +++L++
Sbjct: 295 KKR-GGMGVNLAIGLGIAMSYMFLDKVFGTIAEKSTSFEPWIAVWAPNIFFGIVALLLI 352
>gi|86133725|ref|ZP_01052307.1| predicted permease YjgP/YjgQ family [Polaribacter sp. MED152]
gi|85820588|gb|EAQ41735.1| predicted permease YjgP/YjgQ family [Polaribacter sp. MED152]
Length = 363
Score = 136 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 65/364 (17%), Positives = 145/364 (39%), Gaps = 16/364 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGA-VLAATRVPL 61
IL Y K +L T L+ LL + + ID+ E + E + + +
Sbjct: 2 KILDWYILKRFLVTFLFTLLILIPIAIAIDIAEKIDNFLEHQDLGFLQIVDEYYINFIIY 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+P + I+ L+ +E++ IS + L P+ +G+ L+ + ++ + +
Sbjct: 62 YANTFMPLALFIAVILFTSKLSNNTEIIAINNAKISFTRFLFPYFIGATLITLLSLAMNH 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ--QDIFIGAKKILPENHIWEDF 179
+ S KI + N K+++ ++ + Q +I + +++ DF
Sbjct: 122 FVVPSSSKIRKKFELTYIKN--KRQNQEFKYISDFSLQLTDSTYIFIRNFNTQSNAGYDF 179
Query: 180 TSITIDK---KNKIIH---RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-IPI 232
TS D K+K++ R + + +L+K+ + + +K T N P
Sbjct: 180 TSEVYDGLTMKSKLVADNIRYNDKDSTFALQNWRLRKIYDDKDSIFSGNKIDTVFNFTPR 239
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ S++ S E++K + S K + + +F+ +P+ +T+IA
Sbjct: 240 DLIYKSALSQEMPSD---ELLKFIEISEKRGVKNLNAYLVEFHKRTSLPIASYVLTIIAV 296
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+++ R + +A G+ F+ ++ I + G + +P I S+++
Sbjct: 297 ALAFRK-RRGGTGVNLAIGVGMMFIYVFLLKISEVLGAVAGVNSFIYVWMPNIFFGSIAL 355
Query: 353 LILL 356
+ L
Sbjct: 356 YLYL 359
>gi|162146455|ref|YP_001600914.1| hypothetical protein GDI_0631 [Gluconacetobacter diazotrophicus PAl
5]
gi|209543542|ref|YP_002275771.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161785030|emb|CAP54574.1| putative membrane protein [Gluconacetobacter diazotrophicus PAl 5]
gi|209531219|gb|ACI51156.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 357
Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 58/363 (15%), Positives = 117/363 (32%), Gaps = 18/363 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY L+ L LG L +++ + +G+ +Y ++ A A P Q
Sbjct: 5 DRYIQMVTLRAFLLVALGLTALFSLLEFVDQLAFVGQ-GHYRLADAAAYTALLGPARFMQ 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P L+ ++ L + SEL + IG+S ++++ + + + + L+ +
Sbjct: 64 VTPIAMLLACLLGLGGLAKHSELTALQGIGLSEARIISAVLRLVVPIVMVLFLLAQFVVP 123
Query: 126 SGEKIGIDLIQQWKDNGD-KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ + + K D W D + + P +D
Sbjct: 124 GTRQMAQEGRAAALASATQKDDQDQAFW-----AHGDQQYLSVRRFPSETQADDIDIYRF 178
Query: 185 DKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNST------TLNIPIKMDGF 237
+ A A I +D L+ V + ++
Sbjct: 179 AADGSMTSYLHAARAQIGADDVWTLRDVTRKDIVADQFHTSQLDSMAWHAFLSSRQIRFL 238
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + Y I+ + K + R E + + I +P ++A+ AA
Sbjct: 239 SLPPESVPPIALYRYIQDL----KRHHLPAMRYEQELWARISMPFAMIALIACAAPFVFG 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS +A G+ + I G L P AL P +L + + + +
Sbjct: 295 PPRSQNVGYRMAIGVAIAIVFSLGQEITSRLGLLFDLNPALTALTPSVLLMMSAAYVFIH 354
Query: 358 KED 360
+
Sbjct: 355 TRE 357
>gi|282880317|ref|ZP_06289031.1| putative membrane protein [Prevotella timonensis CRIS 5C-B1]
gi|281305819|gb|EFA97865.1| putative membrane protein [Prevotella timonensis CRIS 5C-B1]
Length = 391
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 56/356 (15%), Positives = 125/356 (35%), Gaps = 18/356 (5%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y K ++ T ++ + + + V D NE ++ E + A +P
Sbjct: 37 YIIKKFIGTYIFSIALIIAIAIVFDFNENLSKFTEYKAPVRAIIFDYYANFIPYFSNLFS 96
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + I L SE++ A GIS +L+ P+++ IL+ + + + G
Sbjct: 97 PLFVFIAVIFFTSKLAGNSEIIAMLATGISFKRLMRPYMISCILIASVSFFLSAYVIPHG 156
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ + +K+N + +D + + + + F+ K
Sbjct: 157 TVVRQNFDNLYKNNKKRSAADNV----QLQVDKGTIAYIQHYDNKTKRGYGFSLDKFKDK 212
Query: 188 NKI--IHRKDADLAIIYNDK--VKLKKVVEYQYGRIPI------DKNSTTLNIPIKMDGF 237
+ + + I + K + + + ++++ + P+ +
Sbjct: 213 KLVSHLTAMEIQYDTIADAKYHWTVTGWKIRELKGLREHITSGAERDTVIMMEPMDLVYS 272
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ E F S E I K N+ + + +++ I +T+I S+S
Sbjct: 273 KGQQETFTSPELREYISKQVNRGSGNV---VQYQVEYHKRIASSFASFILTIIGLSLSAR 329
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ F+ + TI +F + P+ AA +P IL ++
Sbjct: 330 K-RKGGMGLYLGLGLALSFLYILLQTISATFAINADAPPMLAAWVPNILFSVVAYF 384
>gi|71899265|ref|ZP_00681427.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
gi|71730998|gb|EAO33067.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
Length = 385
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 58/366 (15%), Positives = 117/366 (31%), Gaps = 10/366 (2%)
Query: 1 MPGILW-RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
+ L RY + + T L L + L V +G+ +YS A V
Sbjct: 20 LFPCLHDRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGK-GSYSFGHAIAYIAYTV 78
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + P ++ ++ L TSEL RA+G+S +L ++ + L
Sbjct: 79 PRRAYTLFPTAAVIGMLLGLGQLAATSELTALRALGVSRKRLSLSVMMVIGMGTGLMALT 138
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENH---I 175
+ + L K D + W + + G +K L I
Sbjct: 139 GETLGPWAQAQADILKASAKYKSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIMLI 198
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPI 232
D + ++ A + D L++V + + + S +
Sbjct: 199 LHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFHSLPWRSRL 258
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + S +E+++ + + + N E Q++ P+ ++A+ L A
Sbjct: 259 DPAALAAGLAKPRNLSVHELVQSIEY-RRRNHLDARDFEGQYWSRWFYPINVLALCLAAI 317
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS GI + + + L L+P ++ + S
Sbjct: 318 PFSFGLLRSGGMGKRTFLGILFALSFWMLQMFFERIASVLKLNYQIFYLLPPMVMLCGSY 377
Query: 353 LILLQK 358
+ ++
Sbjct: 378 WLFRRQ 383
>gi|123966805|ref|YP_001011886.1| putative permease [Prochlorococcus marinus str. MIT 9515]
gi|123201171|gb|ABM72779.1| possible permease [Prochlorococcus marinus str. MIT 9515]
Length = 386
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 53/366 (14%), Positives = 125/366 (34%), Gaps = 28/366 (7%)
Query: 14 LKTTLYFLLGAMILVFVID--LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFIT 71
L L+F + A +V + + ++ ++ E I + +P + P
Sbjct: 19 LIPILFFAISAFTIVSLSVGVMFDLIRKIVEY-GLPIFIALKIFFLSLPGFLVIAFPMSV 77
Query: 72 LVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIG 131
L+ ++ + NL+ SE++ +++G++ ++++ P ++ ++ + T + + ++
Sbjct: 78 LLSCLLTYGNLSSNSEILALKSLGVNNFRVVLPSLLLAVFMTFLTFTFSDNLVPISNRLA 137
Query: 132 IDLIQQWKDNGDKQKSDIIPW---------------MQISNPQQDIFIGAKKILPENHIW 176
DL+Q + + A++ L
Sbjct: 138 ADLLQNSMGKSMRTERGRYNISFSKYGSIVDSNTNKPIDGASHLTHIFYARRFL--KKTM 195
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYND--KVKLKK----VVEYQYGRIPIDKNSTTLNI 230
D T I KK I A + + + E + I ++ +
Sbjct: 196 YDITVIDFSKKGTKI-LITAQNGVFDEELSSWQFNNGKIMATEDEGSVSTIIFDTYIYPL 254
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVAMTL 289
+ + + + K S R + + Y + +P+ + L
Sbjct: 255 DNGPSKLAEIPLDANNMTISQARKAQKMYEMSGNTKESRKMKVRIYEKMTLPMSCIVFAL 314
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
I +++ ++ + + I F+ Y + S G GIL P AA IPV++ +
Sbjct: 315 IGSTLGIKQNIRSSKSQGFGISIILIFLYYLTCFVFSSMGVIGILTPFFAAWIPVLMFLG 374
Query: 350 LSILIL 355
+L
Sbjct: 375 FGTFLL 380
>gi|298372644|ref|ZP_06982634.1| membrane protein [Bacteroidetes oral taxon 274 str. F0058]
gi|298275548|gb|EFI17099.1| membrane protein [Bacteroidetes oral taxon 274 str. F0058]
Length = 389
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 54/360 (15%), Positives = 129/360 (35%), Gaps = 10/360 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY + YL T ++ + + V D E + E + +P
Sbjct: 33 FSILDRYIMRKYLSTFFMCIIMIISISVVFDYAEKVDDFSENNAPMRAIIFDYYFNFIPY 92
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I + +E++ + G+S +LL P+ + + L+G+ + L+
Sbjct: 93 FANLFTPLFAFISVIFFTSKMAYNTEIIAMLSTGMSFKRLLVPYFMSATLIGLMSFLLGG 152
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + K +D ++ + I + + ++ + +F+
Sbjct: 153 FVIPASNKPRLDFEDKYYRKFRSELVTNI----QLELEPGVVAYFERYEENINRGYNFSL 208
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYG---RIPIDKNSTTLNIPIKMDGF 237
+ K K++ R A+ + + L V+ + I + I + F
Sbjct: 209 EKFEGK-KLVSRLTAEYIDMDSLYHWHLVNYVKRDFKGMREIMTMGDGLDSVIKMDPQDF 267
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
E + ++ + + + I + E ++ +P + +TLI S++
Sbjct: 268 FITGEDAPQMTNTKLYQYLRRQKERGIPGAQKFENEYNNRFAMPFAALILTLIGVSLASR 327
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + + +GI + T+ F +G + + A +P I+ ++ I++ +
Sbjct: 328 KVR-GGTGLHLGFGIALSAIYILFCTVSSMFAINGTMPSLLAIWLPNIIFTTIGIILYAR 386
>gi|118580061|ref|YP_901311.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
gi|118502771|gb|ABK99253.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
Length = 382
Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats.
Identities = 49/372 (13%), Positives = 126/372 (33%), Gaps = 27/372 (7%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L+ + L L +++ + + ++ + +++ + +P
Sbjct: 1 MKRTLYLSIIREITSLFLLGLGIFTLVLLMGRMIKLTEMVISR-GVALADMGRMIICLMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IP L+ ++ F L+ SE+ + +A GIS+ Q++ P ++ +++ +
Sbjct: 60 SFLVYTIPMAFLLAVLLTFGRLSADSEITVMKACGISLVQIMPPVLLCALVAATLGLYAG 119
Query: 121 NPIATSGEKIGIDL-IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
G + + N + + W + I + E H
Sbjct: 120 VVGVPWGNRAFAAMSFDMLSQNVSSTIREKVFW----DDIPGIVLYTDHYDEERHTLSGV 175
Query: 180 TSITIDKKNKIIHRKDADLAIIYND------KVKLKKVVEYQYGR------IPIDKNSTT 227
++ + A ++ ++ L+ + GR I +
Sbjct: 176 VINDERNASRPLT-IFASSGLVAGGANPRDVRLILRSGSIHAQGRGGEYRLIHFAEYVMN 234
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ P D + + + I S K + T+ + +P +
Sbjct: 235 IAAPGGTDTVTRAPREMTVTELHRSIASPSTQPKL----RKKMATEMHSRFALPFASLVF 290
Query: 288 TLIAASVSLEFSRSNQP-RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
++A + L+ RS + ++ G+ Y +++++ + + G A IP ++
Sbjct: 291 AVLAVPLGLQNRRSARSFGFAISIGVLL--AYYILLSLLGTMAEKGSFPAPLALWIPNMV 348
Query: 347 TISLSILILLQK 358
+ L +LL+
Sbjct: 349 FLVLG-WVLLRL 359
>gi|260891450|ref|ZP_05902713.1| permease, YjgP/YjgQ family [Leptotrichia hofstadii F0254]
gi|260858833|gb|EEX73333.1| permease, YjgP/YjgQ family [Leptotrichia hofstadii F0254]
Length = 358
Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats.
Identities = 58/361 (16%), Positives = 132/361 (36%), Gaps = 13/361 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATRVPLI 62
L +Y Y+K+ + ++ ++ + + + + G+L + R P I
Sbjct: 4 LDKYIILNYVKSFILGMMMFFLIFLLAESISLTGWIMDGKLKGHDAIRYLRYG---TPEI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I P L+ +++ + + E+ + GIS ++ ++ S L+ + +
Sbjct: 61 ITNTAPLGVLLGSLLCISKMAKQLEIAAMKTSGISFARIALFPMIFSFLVSMGVFWLNYD 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+L DN + KS+ + + ++ + E +
Sbjct: 121 ALGKSNTKKENLKSLKIDNKEPVKSEKKFIF--VKIDKKTVLFSEHVNKNTGTMEHIEIL 178
Query: 183 TIDKKNKIIHRK-DADLAIIYN--DKVKLKKVVEY-QYGRIPIDKNSTTLNIPIKMDGFQ 238
+K K I + + I ++ K + EY + ++ KM+
Sbjct: 179 KFEKGFKEISKIYTSPFGKINPKTNEWTFKDLKEYDDKTNLMKPADTKKFKFIAKMEDVL 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + E+ +K+ + + + +FY+ I L M LI S+ +
Sbjct: 239 ASPVKAKNLTMPELREKVVYFTR-VGADSLNLRIEFYYRISFALSSFVMCLIGLSLGSRY 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + + G+ Y + TI++S SG + AA IP+I+ + + I +
Sbjct: 298 VR-GGAALNIGLSVIIGYAYYGVSTILRSMAVSGAVPIYAACFIPLIIFLIVGIKLFRDS 356
Query: 359 E 359
E
Sbjct: 357 E 357
>gi|71275897|ref|ZP_00652180.1| permease YjgP/YjgQ [Xylella fastidiosa Dixon]
gi|170729352|ref|YP_001774785.1| hypothetical protein Xfasm12_0116 [Xylella fastidiosa M12]
gi|71163274|gb|EAO12993.1| permease YjgP/YjgQ [Xylella fastidiosa Dixon]
gi|167964145|gb|ACA11155.1| conserved hypothetical protein [Xylella fastidiosa M12]
Length = 368
Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats.
Identities = 58/366 (15%), Positives = 117/366 (31%), Gaps = 10/366 (2%)
Query: 1 MPGILW-RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
+ L RY + + T L L + L V +G+ +YS A V
Sbjct: 3 LFPCLHDRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGK-GSYSFGHAIAYIAYTV 61
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + P ++ ++ L TSEL RA+G+S +L ++ + L
Sbjct: 62 PRRAYTLFPTAAVIGMLLGLGQLAATSELTALRALGVSRKRLSLSVMMVIGMGTGLMALT 121
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENH---I 175
+ + L K D + W + + G +K L I
Sbjct: 122 GETLGPWAQAQADILKASAKYKSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIMLI 181
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPI 232
D + ++ A + D L++V + + + S +
Sbjct: 182 LHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFHSLPWRSRL 241
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + S +E+++ + + + N E Q++ P+ ++A+ L A
Sbjct: 242 DPAALAAGLAKPRNLSVHELVQSIEY-RRRNHLDARDFEGQYWSRWFYPINVLALCLAAI 300
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS GI + + + L L+P ++ + S
Sbjct: 301 PFSFGLLRSGGMGKRTFLGILFALSFWMLQMFFERIASVLKLNYQIFYLLPPMVMLCGSY 360
Query: 353 LILLQK 358
+ ++
Sbjct: 361 WLFRRQ 366
>gi|253702060|ref|YP_003023249.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
gi|251776910|gb|ACT19491.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
Length = 391
Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats.
Identities = 55/368 (14%), Positives = 129/368 (35%), Gaps = 20/368 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L+ Y FK L ++ ++ + ++ + E S A + A +P
Sbjct: 5 MKKTLYAYIFKEIPTPFLVGMVTFTFVLLMGRFLKLAEMVVEK-GVPFSDVARMVAYLLP 63
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IP L+ ++ F L+ SE+ ++ GIS++ LL P ++ + + + V
Sbjct: 64 PFWLFTIPMALLLAMLLAFGRLSGDSEITAMKSCGISLYGLLPPPLLFAACATLACLFVT 123
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
G L+ + I +N D+ + + + +
Sbjct: 124 VYAVPWGNSGFKKLVVEI---AQSSAGISIKEKIFNNAFPDMVVYTQSLDTKAQTMGGVI 180
Query: 181 SITIDKKNKIIHRKDADLAIIYND------KVKLKKVVEY----QYGRIPIDKNSTTLNI 230
A + +D + +L+ + + G + L +
Sbjct: 181 VHDERDPRTPTT-IFASTGALVSDPKSNSMEFQLRNGSIHRAEEKGGYRMVQFQEYNLRV 239
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ +G K + + + E++ + + I +++ + +P TL+
Sbjct: 240 SLA-EGGNKSPRKVSEMTLDELLHPPKGAQQKEILSRG---LEYHGRLALPFSCFVFTLL 295
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A + ++ RS + + I + Y ++ K+ G+ G+L P+ A P ++ +
Sbjct: 296 AIPLGIQNRRSGK-ASGFSLSIGVILLYYVALSAFKTLGERGMLPPLLAGWSPNLIFLMA 354
Query: 351 SILILLQK 358
I + +
Sbjct: 355 GIYLFKKT 362
>gi|28198044|ref|NP_778358.1| hypothetical protein PD0108 [Xylella fastidiosa Temecula1]
gi|182680671|ref|YP_001828831.1| permease YjgP/YjgQ family protein [Xylella fastidiosa M23]
gi|28056104|gb|AAO28007.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
gi|182630781|gb|ACB91557.1| permease YjgP/YjgQ family protein [Xylella fastidiosa M23]
gi|307579132|gb|ADN63101.1| permease YjgP/YjgQ family protein [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 368
Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 59/366 (16%), Positives = 119/366 (32%), Gaps = 10/366 (2%)
Query: 1 MPGILW-RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
+ L RY + + T L L + L V +G+ +YS A V
Sbjct: 3 LFPCLHDRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGK-GSYSFGHAIAYIAYTV 61
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + P ++ ++ L TSEL RA+G+S +L ++ + VL
Sbjct: 62 PRRAYTLFPTAAVIGMLLGLGQLAATSELTALRALGVSRTRLSLSVMMMIGMGTGLMVLT 121
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENH---I 175
+ + L K D + W + + G +K L I
Sbjct: 122 GETLGPWAQAQADILKASAKYKSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIMLI 181
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPI 232
D + ++ A + D L++V + + + +S +
Sbjct: 182 LHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFDSLPWRSRL 241
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + S +E+++ + + + N E Q++ P+ ++A+ L A
Sbjct: 242 DPAVLAAGLAKPRNLSAHELVQSIEY-RRRNHLDARDFEGQYWSRWFYPVNVLALCLAAI 300
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS GI + + + L L+P ++ + S
Sbjct: 301 PFSFGLLRSGGMGKRTFLGILFALSFWMLQMFFERIASVLKLNYQIFYLLPPMVMLCGSY 360
Query: 353 LILLQK 358
+ ++
Sbjct: 361 WLFRRQ 366
>gi|332976301|gb|EGK13158.1| permease YjgP/YjgQ [Psychrobacter sp. 1501(2011)]
Length = 455
Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 54/442 (12%), Positives = 129/442 (29%), Gaps = 92/442 (20%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY L L+ +LG L V + + +Y+ + P
Sbjct: 19 KIISRYVKTNALFAMLFAVLGLWALQIVFAYLAELEDISD--SYTYFDALTYILYKSPYF 76
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++Q P L+ ++ L SEL++ RA G+SI+++++ + + + I + +
Sbjct: 77 LEQFTPTGALLGAVIGLGLLANNSELIVMRAAGLSIYRIVSWVLQPAFIFVILALGINQY 136
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS-----------NPQQDIFIGAKKILP 171
+ + + K + S W + I
Sbjct: 137 VLPETNLMANQIR---KPDTALLASVNGYWTLQNAPAVGETAQKEGATGHNIIYIDYADA 193
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYND----------------------KVKLK 209
+I + +DK N + A + + L
Sbjct: 194 NGNIGK-VKRWHLDKDNNLTAVSQAAGGVYAPKANPQNNAGVQNLSKSEQDLLNYQWDLV 252
Query: 210 KVVEYQYGRIPIDKNSTTL------------------------NIPIKMDGFQ------- 238
V + S N P ++ +
Sbjct: 253 DVTTLKLAERASIMRSEQTVENQLATEAAGSTDADTNVDISNGNTPTSVNQSRNIVLDNE 312
Query: 239 -----------KFSEQFASRSFYEIIKKMSFSNKSNIFH-----------NYRAETQFYF 276
S + S Y + ++ + + ++ + E F+
Sbjct: 313 PLVAKQTQAEDVISLPISPNSVYLLTRRAEDLSLTQLYDHKQFNASQGTRSLEHEVAFWQ 372
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
++ P ++++ ++A S R++ + + + G + I + + P
Sbjct: 373 KLLSPFAILSLVIVACSFVFGSLRTHSLGLRIVVALIFGLLFSYIQDLTSFVSLATGASP 432
Query: 337 VAAALIPVILTISLSILILLQK 358
+ L+P+I + L ++ ++
Sbjct: 433 LLMVLLPIIASALLGFYLIKRQ 454
>gi|15644481|ref|NP_229533.1| hypothetical protein TM1735 [Thermotoga maritima MSB8]
gi|4982312|gb|AAD36800.1|AE001812_10 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 1074
Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats.
Identities = 60/367 (16%), Positives = 128/367 (34%), Gaps = 26/367 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L +Y K + L L G ++ V + ++ + + I + ++ +P
Sbjct: 14 LKVLIKYLLKLSVVPFLIGLGGFIVFVSL-EILYQLSDLIVRHRVGIEKLFLMLYYYLPY 72
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P L+ F L+ EL+ + GIS L+ PF++ LL I + +
Sbjct: 73 FVAMGVPVGVLLAIFWTFSRLSEERELMAIQVHGISQKNLIVPFLILGALLSIAVFFLSD 132
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + + ++ + +I + Q +K +
Sbjct: 133 QIVPEYQSKAEEAMSKYVLKKPEVFVVENVISKIGDDQYFYV---EKYDERTSTMWNVVI 189
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDG 236
+ I+ A + L Y ++ + + L+I ++
Sbjct: 190 FRYGHEETIVT---AKRVQKKGNDWYLFDGNYYTVDKDGFLKLDVHFSEMKLDITEDIEK 246
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + E+ +K+ F K + + + + L + + L+ +SL
Sbjct: 247 LLRVGKTPKEMTGKELKEKIEFFKKVGVKPSPWV-VELHSRYANSLTPIVIVLVGVPLSL 305
Query: 297 EFS-RSNQPRIIVAYGIFSGFMLYTIIT----IMKSFGKSGILLPVAAALIPVILTISLS 351
F RS G+ F+L + + + GK +L PV A IP I+ +
Sbjct: 306 LFQLRSKSW------GVIFTFVLVVLYQGSGAWLSAMGKENLLNPVLAPWIPNIVFTIVG 359
Query: 352 --ILILL 356
+ ILL
Sbjct: 360 TLLFILL 366
>gi|158337152|ref|YP_001518327.1| permease YjgP/YjgQ [Acaryochloris marina MBIC11017]
gi|158307393|gb|ABW29010.1| permease YjgP/YjgQ, putative [Acaryochloris marina MBIC11017]
Length = 390
Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats.
Identities = 56/366 (15%), Positives = 122/366 (33%), Gaps = 15/366 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
++ RY F+ L L+ ++ + V L ++ Q+ E I+ + ++P
Sbjct: 13 LALVDRYLFRQLLPPFLWGMVAFSSIGVSAAVLFDLLGQVSE-ARLPIAIALSILTLQLP 71
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IP L+ ++ L EL+ ++ G+ + +L+ + S+L +F +
Sbjct: 72 YFVSLAIPMSVLLACLLTLSRLQSDGELLALQSAGLHLNRLIGSCLGFSLLACLFMFGLT 131
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + L++Q G P Q++ + T
Sbjct: 132 ESLVPVSQAHSHHLLRQTLQAGQFSLQGRHIVYPDIGPNQELRRLFYAQTGQGQTLSGIT 191
Query: 181 SITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGR-------IPIDKNSTTLNIP 231
I N A A + K Y G I K L
Sbjct: 192 VIDWTLPNN-QQVLIAQSATWNAERNIWIFKDGSIYAIGTDGAEKHIIEFSKQELQLPPQ 250
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + +++ K+ + + Q + I +P ++ L+
Sbjct: 251 LSLTDSDINPNGVTLAQSQQLLTKLRQTGRPTQIRA--LAIQIHRKIALPFTVIIFGLVG 308
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+++ + R + Y +I I ++G+ GI+ P A P ++T +
Sbjct: 309 STLGI-SQRRLAVSNGFGISLILVLGQYILIFIADAWGQLGIISPWFGAWTPNLVTGLIG 367
Query: 352 ILILLQ 357
+ +LL+
Sbjct: 368 VSLLLR 373
>gi|225012841|ref|ZP_03703274.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
MS024-2A]
gi|225002963|gb|EEG40940.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
MS024-2A]
Length = 357
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 58/360 (16%), Positives = 123/360 (34%), Gaps = 12/360 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ Y K Y+ T +L + + ++D+ E ++ E
Sbjct: 2 KLIDLYIIKRYIGTFTVMILLFIPIGIMVDVAEKIDKFKEK-EVPFGAIIDYYIDFTWYF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P + I L +E++ + GIS ++ L PF++ + + IF
Sbjct: 61 ANLLFPIFLFLSVIWFTSKLANNTEVIAILSSGISFFRYLRPFLLAATFIAIFAFFAGML 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I D ++ + + + + Q N + FI P +FT
Sbjct: 121 IVPKSNLGFNDFRYKYIIKKEARNTTKV--FQQINENE--FIYVNSYDPIRKRATNFTLE 176
Query: 183 TIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI---KMDGF 237
+ NK+ + ++ + +L + + S + +++
Sbjct: 177 HF-EGNKLKFKIKSNRIRWVEDDSVFRLSNYSKRTFLGDSEHFESIARKDTLFDFEIEDL 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + +F E+ + + + + IP+ +T+IA +VS
Sbjct: 236 APVNYIAETLTFSELNQFIEDEKERGSMLTNSHLLVRHKRWSIPISAFILTIIAVAVS-S 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F R + +A+GI GF+ I PV AA +P++L L+ +L
Sbjct: 295 FKRRGGMGVNLAFGISLGFLFIFFDKIFGVLVSKSTFPPVVAAWLPLVLFGILAFFLLRY 354
>gi|326336103|ref|ZP_08202275.1| permease YjgP/YjgQ family protein [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325691612|gb|EGD33579.1| permease YjgP/YjgQ family protein [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 359
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 64/362 (17%), Positives = 129/362 (35%), Gaps = 18/362 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY K Y T L + + ++D E +M + + A V
Sbjct: 2 KIIDRYILKRYFLTYSALFLMFIPIGILVDFAEKNQKMTDN-HAPTEAIIKYYANFVIHF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P + I L +E+V + GIS + L P+ G+ +L +F +++
Sbjct: 61 ANILFPIFLFLSVIWFTSKLAEKTEIVAMLSSGISYNRFLRPYFYGATILSVFVLIMGMF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + + K + + ++ +I N+ DF
Sbjct: 121 VVPYSSGVYNEFYGTYLSPNLYSKGSRLY----NQVNKNEYIYVSSFDANNNQGSDFVLE 176
Query: 183 TIDKKNKIIHRKDADL-AIIYNDKVKL--------KKVVEYQYGRIPIDKNSTTLNIPIK 233
D K+ + A I ND +K +KV E+ + + T LN K
Sbjct: 177 RFDGL-KMTDKITASNIQWIENDSIKTYRLSYYTHRKVGEFDDIYEQVIQKDTLLNF--K 233
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+++F+E+ K ++ + + E +Y + +T+I +
Sbjct: 234 TTDLLPIEYAAETKNFFELNKFIAEERQKGSPNIRIYELVYYRRWAAIFNVFILTIIGVA 293
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
VS R + +A+G+ GF I + + P+ A +IP + L++
Sbjct: 294 VSSVKKR-GGMGVNLAFGVLIGFSYVFFERIFGIMAEKSGITPLMAVIIPNAMFALLAVY 352
Query: 354 IL 355
++
Sbjct: 353 MI 354
>gi|222054621|ref|YP_002536983.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
gi|221563910|gb|ACM19882.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
Length = 389
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 57/372 (15%), Positives = 122/372 (32%), Gaps = 26/372 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L+RY FK + ++ + L + + + + + +P
Sbjct: 1 MNSTLYRYIFKEIPPPFFLGVATFTFVLLMGRLLRLTDMVVTK-GVPLGDVLRMILYLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IP L+ ++ F L+ SE++ +A GIS++ LL P +++ + +
Sbjct: 60 SFLLVTIPMAFLLAILLAFGRLSGDSEIIAMKASGISLYGLLPPVFSLAVITYLAGAFIT 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
G DL+ +N + + I I +
Sbjct: 120 IYAVPKGNSAFKDLLVTVVENRVSLGVKEKVF---NGDFPGIVIYCDGYDERTQVMSGII 176
Query: 181 SITIDKKNKIIHR------KDADLAI------IYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ +AD A + + + E G + + L
Sbjct: 177 IQDERDPLEPSTIMAGHGTINADHASRSVRLHLASGSIHRTAGRE---GYRLVQFSDYDL 233
Query: 229 NIPIKM--DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+I + ++ + F NK +++ +P +
Sbjct: 234 HINLSQASQAVKRDERDMSLAELRTNWNSNHFDNK----GRLEMRLEYHRRFSLPFACLI 289
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
TL+ + ++ RS + A IF + Y I++ K+ G+ +L P AA +P +L
Sbjct: 290 FTLVGMPLGIQNQRSGK-AAGFAISIFLLLLYYIILSACKTLGEKELLNPFLAAWVPNML 348
Query: 347 TISLSILILLQK 358
++ I + +
Sbjct: 349 FVAFGIYLFRKT 360
>gi|153827727|ref|ZP_01980394.1| conserved permease [Vibrio cholerae MZO-2]
gi|149737798|gb|EDM52703.1| conserved permease [Vibrio cholerae MZO-2]
Length = 256
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 51/264 (19%), Positives = 97/264 (36%), Gaps = 17/264 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N FI K+ EN
Sbjct: 120 EWGAPQAQKMARDMRAFATSGGAIMSVRTGVWARDAND----FIFIAKV--ENEQLYGLN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKVV--------EYQYGRIPIDKNSTTLNIP 231
D+ K+ ++ + N++ +K V E +P + T+L P
Sbjct: 174 LWRFDENKKLSTVIFSEQVDYVANNEWLMKDAVLTRLVNDIEISKESLPEYRWRTSL-AP 232
Query: 232 IKMDGFQKFSEQFASRSFYEIIKK 255
K+ E+ + + +
Sbjct: 233 DKLAVVTVKPEELSLTGLSDYVHY 256
>gi|71901306|ref|ZP_00683403.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
gi|71728926|gb|EAO31060.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
Length = 385
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 58/366 (15%), Positives = 117/366 (31%), Gaps = 10/366 (2%)
Query: 1 MPGILW-RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
+ L RY + + T L L + L V +G+ +YS A V
Sbjct: 20 LFPCLHDRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGK-GSYSFGHAIAYIAYTV 78
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + P ++ ++ L TSEL RA+G+S + ++ + VL
Sbjct: 79 PRRAYTLFPTAAVIGMLLGLGQLAATSELTALRALGVSRTRSSLSVMMMIGMGTGLMVLT 138
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENH---I 175
+ + L K D + W + + G +K L I
Sbjct: 139 GETLGPWAQAQADILKASAKYKSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIMLI 198
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPI 232
D + ++ A + D L++V + + + S +
Sbjct: 199 LHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFHSLPWRSRL 258
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + S +E+++ + + + N E Q++ P+ ++A+ L A
Sbjct: 259 DPAALAAGLAKPRNLSAHELVQSIEY-RRRNHLDARDFEGQYWSRWFYPINVLALCLAAI 317
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S RS GI + + + L L+P ++ + S
Sbjct: 318 PFSFGLLRSGGMGKRTFLGILFALSFWMLQMFFERIASVLKLNYQIFYLLPPMVMLCGSY 377
Query: 353 LILLQK 358
+ ++
Sbjct: 378 WLFRRQ 383
>gi|148270164|ref|YP_001244624.1| permease YjgP/YjgQ family protein [Thermotoga petrophila RKU-1]
gi|281412494|ref|YP_003346573.1| permease YjgP/YjgQ family protein [Thermotoga naphthophila RKU-10]
gi|147735708|gb|ABQ47048.1| permease YjgP/YjgQ family protein [Thermotoga petrophila RKU-1]
gi|281373597|gb|ADA67159.1| permease YjgP/YjgQ family protein [Thermotoga naphthophila RKU-10]
Length = 1061
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 60/366 (16%), Positives = 127/366 (34%), Gaps = 26/366 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L +Y K + L L G ++ V + ++ + + I + ++ +P
Sbjct: 2 KVLIKYLLKLSVVPFLIGLGGFIVFVSL-EILYQLSDLIVRHRVGIEKLFLMLYYYLPYF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ F L+ EL+ + GIS L+ PF++ LL I + +
Sbjct: 61 VAMGVPVGVLLAIFWTFSRLSEERELMAIQVHGISQKNLIVPFLILGALLSIAVFFLSDQ 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + + + ++ + +I + Q +K +
Sbjct: 121 IVPEYQSKAEEAMSKYVLKKPEVFVVENVISKIGDDQYFYV---EKYDERTSTMWNVVIF 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDGF 237
+ I A + L Y ++ + + L+I ++
Sbjct: 178 RYGHEETI---ITAKRVQKKGNDWYLFNGNYYTVDKDGFLKLDVHFSEMKLDITEDIEKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + E+ +K+ F K + + + + L + + L+ +SL
Sbjct: 235 LRVGKTPREMTGRELKEKIEFFKKVGVKPSPWV-VELHSRYANSLTPIVIVLVGVPLSLL 293
Query: 298 FS-RSNQPRIIVAYGIFSGFMLYTIIT----IMKSFGKSGILLPVAAALIPVILTISLS- 351
F RS G+ F+L + + + GK +L PV A IP I+ +
Sbjct: 294 FQLRSKSW------GVIFTFVLVVLYQGSGAWLSAMGKENLLDPVLAPWIPNIVFTIVGT 347
Query: 352 -ILILL 356
+ ILL
Sbjct: 348 LLFILL 353
>gi|160884582|ref|ZP_02065585.1| hypothetical protein BACOVA_02569 [Bacteroides ovatus ATCC 8483]
gi|260174906|ref|ZP_05761318.1| hypothetical protein BacD2_23825 [Bacteroides sp. D2]
gi|315923149|ref|ZP_07919389.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|156110321|gb|EDO12066.1| hypothetical protein BACOVA_02569 [Bacteroides ovatus ATCC 8483]
gi|313697024|gb|EFS33859.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 365
Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 56/363 (15%), Positives = 117/363 (32%), Gaps = 20/363 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T ++ + + + V D NE +++ E +P
Sbjct: 7 IKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWDKIIFEYYMNFIPY 66
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S +++ P+++ + ++ + T + +
Sbjct: 67 FSNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALVTFTLSS 126
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G ++ ++ + + + F+
Sbjct: 127 YVIPKGSVTRLNFEDRYIKPKKQNSVSNV----QLEVDSGVIAYIDNYNNAMKTGNRFSL 182
Query: 182 ITIDKKNKII----HRKDADLAIIYNDKVKLKK--VVEYQYGRIPIDKNSTTLNI----P 231
K + R D ++ K + V E + I K +I P
Sbjct: 183 DKFVDKKLVSHLTARRITYDTTTVH--KWTIHDYMVRELDGLKEKITKGDRIDSIINMEP 240
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ E S + I K +NI E +++ I + +T+I
Sbjct: 241 SDFLIMKNQQEMLTSPELSDYIAKQKRRGFANI---KEFEIEYHKRIAMSFASFILTIIG 297
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S ++ + S F TI +F +G + P A IP IL ++
Sbjct: 298 VSLSSRKTKGGMGLHLGIGLGLS-FSYILFQTITSTFAVNGNVPPAVAVWIPNILYAGIA 356
Query: 352 ILI 354
+
Sbjct: 357 FFL 359
>gi|85859086|ref|YP_461288.1| permease [Syntrophus aciditrophicus SB]
gi|85722177|gb|ABC77120.1| permease [Syntrophus aciditrophicus SB]
Length = 394
Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 63/371 (16%), Positives = 139/371 (37%), Gaps = 26/371 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY K L+ L ++ + + ++ + M +S A L +P
Sbjct: 2 KIINRYLVKEILQPFGIVLFVLTFVLLMGKILQLMDLMINK-GVGLSHIARLILFLLPSF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P LV ++ L+ +EL + +A GIS+++L P ++ +++ + T
Sbjct: 61 LVFTLPISLLVSVLIALGRLSSDNELTVLKASGISLYRLTPPILMIALVSFMLTAATTLF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD-IFIGAKKILPENHIWEDFTS 181
+ LI N + K+ I ++ N + + + A+K+ + E
Sbjct: 121 LVPYSNTATKALI----FNVARNKASIGIKEKVFNADFNGVVLYAEKVPSDGRFMEGVLV 176
Query: 182 ---ITIDKKNKIIHRKDADLAIIYND------KVKLKKVVEYQYGR---IPIDKNSTTLN 229
T D+ II A A + D ++L+ Y I + T +
Sbjct: 177 SDQRTADEPGTII----AKKAFLVADPKSMTVTLRLEDGSTYFVAENMKIFRKMDFKTYD 232
Query: 230 IPIKMDGFQKFSEQFASRSFYEI-IKKMSFSNKSNIFHNYRAE---TQFYFLIVIPLMLV 285
I + + +E+ +++ E+ +++ + KS + + Y IPL +
Sbjct: 233 INLDLQSSSSDAEKMRTKALKEMTPRELIQNLKSGRLDDKIYRKTAMELYEKFSIPLSCL 292
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+++A + ++ + G+ + + Y + + G L P + IP I
Sbjct: 293 VFSILAIPLGVKPHHRSVKSRGFTIGLMTVLLYYLLQLGCEGMVTVGRLSPFLGSWIPNI 352
Query: 346 LTISLSILILL 356
L ++
Sbjct: 353 LFTIAGTVLYF 363
>gi|284037837|ref|YP_003387767.1| permease YjgP/YjgQ family protein [Spirosoma linguale DSM 74]
gi|283817130|gb|ADB38968.1| permease YjgP/YjgQ family protein [Spirosoma linguale DSM 74]
Length = 358
Score = 134 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 64/360 (17%), Positives = 133/360 (36%), Gaps = 17/360 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L Y K +L+T ++ ++ +++V +ID E + + +P
Sbjct: 2 KLLDAYILKRFLQTYIFVVMVIVLVVVMIDYTEKVDNFHKTHAPGNEILFNYYLNFIPYW 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I P + + + + L +E++ + G+S +LL P+V+G+ +L + T ++N
Sbjct: 62 ANYISPLMVFIATVFLTSRLAARTEIIAILSSGVSFVRLLLPYVLGATVLAVATYFMVNY 121
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ K I ++ N S ++I+ + + + +++ FT
Sbjct: 122 VIPKANKTRIAFEIKY-INDAYNFSGRNVHLKIAP---NTYAYLESYNNQSNTGYKFTME 177
Query: 183 TIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRI-----PIDKNSTTLNI-PIKM 234
+ + N++ + AD K + P K TTLN+ P
Sbjct: 178 RV-EGNQLKQKLSADHIEWDAKKKKWTVFDYKIRTINGPQETLTPGAKIDTTLNLKPDDF 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
E + I+ + + + Y P ++ +T+I +
Sbjct: 237 SSDFNLYETLTRPELNDHIELLQSRGADGV---ETYLLEKYSRDTRPFAIIILTVIGVIM 293
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S SR VA G F F + K +SG L P+ A +P + ++ +L+
Sbjct: 294 SARKSRRG-VGWQVALGFFLAFTYLLFFMLAKGIAESGNLNPIVAVWLPNAIFAAIGVLL 352
>gi|170288881|ref|YP_001739119.1| permease YjgP/YjgQ family protein [Thermotoga sp. RQ2]
gi|170176384|gb|ACB09436.1| permease YjgP/YjgQ family protein [Thermotoga sp. RQ2]
Length = 1061
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/366 (16%), Positives = 128/366 (34%), Gaps = 26/366 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L +Y K + L L G ++ V + ++ + + I + ++ +P
Sbjct: 2 KVLIKYLLKLSVVPFLIGLGGFIVFVSL-EILYQLSDLIVRHRVGIEKLFLMLYYYLPYF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ F L+ EL+ + GIS L+ PF++ LL I + +
Sbjct: 61 VAMGVPVGVLLAIFWTFSRLSEERELMAIQVHGISQKNLIVPFLILGALLSIAVFFLSDQ 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + + + ++ + +I + Q +K +
Sbjct: 121 IVPEYQSKAEEAMSKYVLKKPEVFVVENVISKIGDDQYFYV---EKYDERTSTMWNVVIF 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDGF 237
+ I+ A + L Y ++ + + L+I ++
Sbjct: 178 RYGHEETIVT---AKRVQKKGNDWYLFDGNYYTVDKDGFLKLDVHFSEMKLDITEDIEKL 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + E+ +K+ F K + + + + L + + L+ +SL
Sbjct: 235 LRVGKTPREMTGRELKEKIEFFKKVGVKPSPWV-VELHSRYANSLTPIVIVLVGVPLSLL 293
Query: 298 FS-RSNQPRIIVAYGIFSGFMLYTIIT----IMKSFGKSGILLPVAAALIPVILTISLS- 351
F RS G+ F+L + + + GK +L PV A IP I+ +
Sbjct: 294 FQLRSKSW------GVIFTFVLVVLYQGSGAWLSAMGKENLLDPVLAPWIPNIVFTIVGT 347
Query: 352 -ILILL 356
+ ILL
Sbjct: 348 LLFILL 353
>gi|33862844|ref|NP_894404.1| putative permease [Prochlorococcus marinus str. MIT 9313]
gi|33634760|emb|CAE20746.1| possible permease [Prochlorococcus marinus str. MIT 9313]
Length = 403
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 51/377 (13%), Positives = 129/377 (34%), Gaps = 24/377 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
+ +L R+ + L+ + ++ V V + ++ ++ E + + + ++
Sbjct: 29 LIPLLDRWLLGELIPVLLFAIAAFTVVSVSVGVMFDLVRKIVEF-GLPLHFALQVFSLKL 87
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + P TL+ ++ + L+ SE R++G+S +++ P + ++L+ T +
Sbjct: 88 PFFLVISFPMATLLATLLAYSRLSSNSEFTALRSLGVSTRRIVAPALALALLMTGLTFIF 147
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQ-----------KSDIIPWMQISNPQQDIFIGAKK 168
+ I I++ + + N A++
Sbjct: 148 NDVIVPRTNSSAEVTIKRALGKAIATEKGKHVVYSRFGTITGAEAEDWNQGLSQLFYARE 207
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQY----GRIPID 222
L ED T + + + A+ AI + + ++
Sbjct: 208 FLKGE--MEDVTVLDLSRLG-FTQMLKAERAIWNEQEAMWEFFNGNILTLTPRGSTTSVE 264
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF-HNYRAETQFYFLIVIP 281
+ + K + + + + ++ S + R + + P
Sbjct: 265 FDRYLYPLTSGPIRVAKLPKDANNMTVAQAMEAASIYTDAGNRKEARRLKVRIQEKFTFP 324
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ + LI +S+ + + + YT+ S G +G L P+ AA
Sbjct: 325 MSCLVFGLIGSSLGAKPNSRTSRTQGFGISLLLILAYYTLSFSFSSLGVTGTLTPMLAAW 384
Query: 342 IPVILTISLSILILLQK 358
IPV ++++ +LL++
Sbjct: 385 IPVFISLA-GGGLLLRQ 400
>gi|15836745|ref|NP_297433.1| hypothetical protein XF0140 [Xylella fastidiosa 9a5c]
gi|9104926|gb|AAF82953.1|AE003867_7 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 368
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 56/368 (15%), Positives = 112/368 (30%), Gaps = 26/368 (7%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + + T L L + L V +G+ +YS A VP
Sbjct: 9 DRYVARAVVATVLLTWLVLLGLDVVNAFASEVRDIGK-GSYSFGHAIAYIAYTVPRRAYT 67
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P ++ ++ L TSEL RA+G+S +L ++ + L +
Sbjct: 68 LFPTAAVIGMLLGLGQLAATSELTALRALGVSRKRLSLSVMMMIGMGTGLMALTGETLGP 127
Query: 126 SGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQDIFIGAKKILPENH---IWEDFTS 181
+ L K D + W + + G +K L I D
Sbjct: 128 WAQAQADILKASAKYQSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIMLILHDVRL 187
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ 238
+ ++ A + D L++V + + + S +
Sbjct: 188 YQLAADGRLQSMTRAARVEHHQDVWILQQVQRDTFSERGVQRETFHSLPWRSRLDPAALA 247
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S +E+++ + + + N E Q++ P+ ++A+ L A S
Sbjct: 248 AGLAKPRNLSAHELVQSIEY-RRRNHLDARDFEGQYWSRWFYPVNVLALCLAAIPFSFGL 306
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS--------GILLPVAAALIPVILTISL 350
RS GI + + + +L P+ +
Sbjct: 307 LRSGGMGKRTFLGILFALSFWMLQMFFERIASVLKLNYQIFYLLPPMV---------MLG 357
Query: 351 SILILLQK 358
L ++
Sbjct: 358 GSYWLFRR 365
>gi|218885479|ref|YP_002434800.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756433|gb|ACL07332.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 361
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 62/356 (17%), Positives = 137/356 (38%), Gaps = 12/356 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY F+ L L L L + DL + + E S+S A + PLII
Sbjct: 3 LLARYLFRNNLMLILPTLAIGTGLYILSDLFDRLDDFLE-AGVSLSVAAWYFVAKTPLII 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QI+P + L+ + ++R EL+ +A GIS+ ++ V+ ++ G + +
Sbjct: 62 SQILPAVFLLATLSQLCLMSRGRELIALQAGGISMGRIARVLVLCGLVWGGLQLGFSQVL 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
SGE + W ++ + + + +++P +
Sbjct: 122 GVSGEVEAARI---WSEDVRGKTEATATLRNVWFTDGAYVVSLAEVVPAQGTGRGLAAYE 178
Query: 184 IDKKN-KIIHRKDADLAIIYNDKVKLKKVVEYQY-GRIPIDKNSTTLNIPIKMDGF--QK 239
+ I+ A + +L V E+ G + +S TL + + F
Sbjct: 179 LSDDGLSILRVVRAATFTAGQRQWELHGVTEFDPSGYLSTRHDSLTLPLRQDVQAFLITA 238
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + +++ + ++ + T ++ + ++ ++AA + +
Sbjct: 239 RNADPSRLPLWQLGDAIDRL-SASGSNVEGVRTAWHMKLAY---AASLVVMAAVAAAIVT 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + + + F+ YT+ T+ + G+ GI+ P AA L +++++L L
Sbjct: 295 WRDNIYLGIGLSLIITFLFYTMFTVGGTLGQKGIVSPPLAAWGSNALILAVALLRL 350
>gi|124023382|ref|YP_001017689.1| permease [Prochlorococcus marinus str. MIT 9303]
gi|123963668|gb|ABM78424.1| possible permease [Prochlorococcus marinus str. MIT 9303]
Length = 403
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 49/377 (12%), Positives = 130/377 (34%), Gaps = 24/377 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
+ +L R+ + L+ + ++ V V + ++ ++ E + + + ++
Sbjct: 29 LIPLLDRWLLGELIPVLLFAIAAFTVVSVSVGVMFDLVRKIVEF-GLPLHFALQVFSLKL 87
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + P TL+ ++ + L+ SE R++G+S +++ P + ++L+ T +
Sbjct: 88 PFFLVISFPMATLLATLLAYSRLSSNSEFTALRSLGVSTRRIVAPALALALLMTGLTFIF 147
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSD-IIPWMQISNPQQ----------DIFIGAKK 168
+ I I++ + + + + A++
Sbjct: 148 NDVIVPRTNSSAEVTIKRALGKAIATEKGKHVVYSRFGTITGTKAEDRNQGLSQLFYARE 207
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQY----GRIPID 222
L ED T + + + A+ AI + + ++
Sbjct: 208 FLKGE--MEDVTVLDLSRLG-FTQMLKAERAIWNEQEAMWEFFNGNILTLTPSGSTTSVE 264
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF-HNYRAETQFYFLIVIP 281
+ + K + + + + ++ S + R + + P
Sbjct: 265 FDRYLYPLTSGPIRVAKLPKDANNMTVAQAMEAASIYTDAGNRKEARRLKVRIQEKFTFP 324
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ + LI +S+ + + + YT+ S G +G L P+ AA
Sbjct: 325 MSCLVFGLIGSSLGAKPNSRTSRTQGFGISLLLILAYYTLSFSFSSLGVTGTLTPMLAAW 384
Query: 342 IPVILTISLSILILLQK 358
+PV ++++ +LL++
Sbjct: 385 VPVFISLA-GGGLLLRQ 400
>gi|124025509|ref|YP_001014625.1| putative permease [Prochlorococcus marinus str. NATL1A]
gi|123960577|gb|ABM75360.1| possible permease [Prochlorococcus marinus str. NATL1A]
Length = 395
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 56/374 (14%), Positives = 118/374 (31%), Gaps = 23/374 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLN-EIQNQMGELPNYSISRGAVLAATRV 59
+ +L R+ L + + ++ + + ++ ++ E+ S + ++
Sbjct: 21 IIPLLDRWILFELLPPLFFSIAAFTVVSLSVGVIFDLIRKIVEI-GLPFSVAIQILLLKL 79
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I P L+ ++ + +LN SE+ ++IGIS+++++ P ++ SI + T +
Sbjct: 80 PSFIVISFPMAMLLSTLLAYGSLNDNSEIKALKSIGISVYRIILPGLILSIAMSYMTFIF 139
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP----------QQDIFI-GAKK 168
N I + K ++ + + A K
Sbjct: 140 NNNIVPNTNKNAEIILANSLGRSFANEQGEDIIFSKKGEILDPYSSYKKNGVTHLFYAWK 199
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKL--KKVVEYQYGRIPIDKN 224
+ D T I K A I +DK + ++
Sbjct: 200 FIDG--QMLDVTVIDFSKLG-FTQMLKAKKGIWNSDKNNWEFFEGDILTLSPDGSNTRTK 256
Query: 225 STTLNIPI--KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF-HNYRAETQFYFLIVIP 281
+ P+ ++ + + + E M S R + + +P
Sbjct: 257 FLSFLYPLGTELTNIAQLPKDSNDMNLGEANTAMKLYQSSGNIKEARRMKVRIQEKFTLP 316
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ LI S + I + Y + S G GI+ P AA
Sbjct: 317 IACSVFALIGCSFGVMQKSGGGRSQSFGLSIILILIYYILSFSFSSLGVKGIINPFFAAW 376
Query: 342 IPVILTISLSILIL 355
PV L++ +L
Sbjct: 377 SPVFLSMLGGGFLL 390
>gi|328948913|ref|YP_004366250.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
2489]
gi|328449237|gb|AEB14953.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
2489]
Length = 356
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 53/358 (14%), Positives = 123/358 (34%), Gaps = 12/358 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y K + + ++ ++++ + D + N + + N S A++ +P +
Sbjct: 3 LVFYMLKRFFPVFIGAVMFFVLVLCLTDLFMNLWNYISK--NVSSRDVALILIYYIPKAV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P L + + +EL+ A GIS+++ P + ++ + + + I
Sbjct: 61 WYAVPIAMLFATAYMLSDFYARNELLAVFASGISLFKFSVPLLTVAVAMSFALFIFEDNI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
L + + I M ++ A + +
Sbjct: 121 VVPSFSKKTQLQESVLSKEKSLNNSKIVIM---AEGGNVIYKADFFNNKAESLSKLYVLF 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP----IDKNSTTLNIPIKMDGFQK 239
+ K A A N+ KL+ VEY++ + + + + F+
Sbjct: 178 RTEDKKPDAVVYAQKAFWKNNSWKLENAVEYKFQDENFLACVLEKRLEERLLEPPETFRN 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + E + + K+ + +Y P ++ + +A +S +
Sbjct: 238 NTISVERVNTKEAREYIEHLEKAGLPSAEEKSV-YYKKYSFPFVVFIVVFLAIGLS-GKT 295
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R N + +A I + + Y + K + P+ A PV+L I +S ++L
Sbjct: 296 RKNVLLVSLAMSITAVVLFYVFQMVTMLMAKFQAIPPLFGAWSPVVLFIIISCVLLKY 353
>gi|307299316|ref|ZP_07579117.1| permease YjgP/YjgQ family protein [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306915112|gb|EFN45498.1| permease YjgP/YjgQ family protein [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 1438
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 57/346 (16%), Positives = 131/346 (37%), Gaps = 20/346 (5%)
Query: 18 LYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIV 77
++ L I+ ++L + M I + +L +P I IP L+
Sbjct: 4 IFVGLAGFIIFVSLELLYYLSDMIIRYKVGIDKLFLLIYYNLPEFIVLGIPVGILLAIFW 63
Query: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ 137
V + +EL+ + GIS+ +L+ PF++ I+ F L+ + + + + + +
Sbjct: 64 VLSRMRSDNELIALQTHGISLKRLVIPFLLIGIIFSGFAYLLNDYLVPAASTKANEAMAR 123
Query: 138 WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDAD 197
+ + +MQ S + I ++I + ++ + + + + A+
Sbjct: 124 FVYKQPEVTLKENVFMQDSQGR---MIYVRRIDQDTKELKNVSIYEVSRGQ--VTLTTAE 178
Query: 198 LAIIYNDKVKLKKVVEYQYGR-----IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEI 252
A+I ++K L K YQ + + + I ++ + + ++ E+
Sbjct: 179 SAVISSNKWILSKANIYQTDESGFLGVEMQFGTAEFEIDEDIERYLASFKSPKEKTSKEL 238
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
+ + K+ + E + + + + L+ VSL F+ ++ + +
Sbjct: 239 RDDIE-AFKNTGINTSSLEVALQEKYSMSIAPLVIVLLGVPVSLMFNLQSKS-----WSV 292
Query: 313 FSGFMLYTIITIMKS----FGKSGILLPVAAALIPVILTISLSILI 354
F+L I + GK ++ P A IP I L ++I
Sbjct: 293 ILTFLLVVIYQGSGAWLSGMGKENLINPSLAPWIPNITFSILGVII 338
>gi|330994315|ref|ZP_08318243.1| Lipopolysaccharide export system permease protein lptG
[Gluconacetobacter sp. SXCC-1]
gi|329758782|gb|EGG75298.1| Lipopolysaccharide export system permease protein lptG
[Gluconacetobacter sp. SXCC-1]
Length = 369
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 57/364 (15%), Positives = 130/364 (35%), Gaps = 14/364 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L Y + + + + L+ ++ L E ++ + ++ A R+PL+
Sbjct: 12 VLLGYLSREMMGKVFATAVIVVSLMEILSLLEQVTEIMHR-HLGLTGVLYYAVMRLPLLF 70
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P L+ ++ + ++E+ I RA G+S L+ F+ +I LGI LV + +
Sbjct: 71 CNAMPIAVLIGALLALVQMTTSNEIAIMRAAGLSTPGLIKLFLPTTIALGILCGLVNDQV 130
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E+ + + W++ N I + + D T
Sbjct: 131 TPRTEQALAQWWNVTTPGAIAEAHN--YWVRSGND----LISIHFLGSGASVLGDVTVYH 184
Query: 184 IDKKNKIIHRKDADLAIIYNDKVK------LKKVVEYQYGRIPIDKN-STTLNIPIKMDG 236
D+++ + D A + L + + + + S L+ P +
Sbjct: 185 RDRQSLLQKVTTLDTARYVHGHWYGTPTRMLSVISPTRIDLLDVPPGQSIRLDWPDTLTP 244
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + T+ I++PL M L+A V
Sbjct: 245 GYITQLTISFTQSISTMLDEEAGRLPSSQSPSFFLTEILGRIMLPLTFTVMLLLAVPVVY 304
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R+ + + + +G + ++++ G +G L + A + +++ I I +LL
Sbjct: 305 IPPRAGIRSWLPVWCLGAGLLFVVFQGLLRALGNAGTLPSLMAIFVGILIFILGVITVLL 364
Query: 357 QKED 360
+ E+
Sbjct: 365 RIEE 368
>gi|94263394|ref|ZP_01287208.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
gi|93456230|gb|EAT06364.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
Length = 359
Score = 133 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 53/347 (15%), Positives = 128/347 (36%), Gaps = 20/347 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + + L G + + ++D E + + ++PLI
Sbjct: 2 KLLDRYLITSFGRNLATVLGGLLAIYLLVDFFERVDNFLD-AGLGTGGAVRYLLLKIPLI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL---- 118
I+Q++P L+ I+ LNR EL+ +A G+S +++ P ++ + + +
Sbjct: 61 IEQLLPVALLLAGIITLGLLNRRHELMALQAAGLSTRRIIRPLLLAAFACTLLGMASSQW 120
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
++ P + ++ ++Q ++ G +++ +I Q+ + + D
Sbjct: 121 LLPPTMSELNRLWHQEVRQQENRGIERQG------RIYYRGQEGIYSFRPAADSENRLAD 174
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIK 233
F+ +T D+ ++ A A K L++ + D L +P +
Sbjct: 175 FSYLTWDRDYRLAQLIFAARATWDGRKWLLEEGQLKEKANGDDDFVVDYFERRQLALPEE 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL--MLVAMTLIA 291
F + R+ + + + S ++ +A I + + + I
Sbjct: 235 PADFFIPPYALSERALSTLFSQATAS--ADTPQRRQARLAIQHKISYIFLGLPLLLIGIP 292
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+++ R + + F F+ + + + +S +G L P
Sbjct: 293 LLLAMSRGRGRDLALAIPAASFLAFITWGLWSFGQSLAAAGQLPPFV 339
>gi|237718555|ref|ZP_04549036.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|293373071|ref|ZP_06619439.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
gi|299145713|ref|ZP_07038781.1| putative membrane protein [Bacteroides sp. 3_1_23]
gi|229452015|gb|EEO57806.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|292631957|gb|EFF50567.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
gi|298516204|gb|EFI40085.1| putative membrane protein [Bacteroides sp. 3_1_23]
Length = 365
Score = 133 bits (336), Expect = 4e-29, Method: Composition-based stats.
Identities = 56/363 (15%), Positives = 117/363 (32%), Gaps = 20/363 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T ++ + + + V D NE +++ E +P
Sbjct: 7 IKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWDKIIFEYYMNFIPY 66
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S +++ P+++ + ++ + T + +
Sbjct: 67 FSNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALVTFTLSS 126
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G ++ ++ + + + F+
Sbjct: 127 YVIPKGSVTRLNFEDRYIKPKKQNSVSNV----QLEVDSGVIAYIDNYNNAMKTGNRFSL 182
Query: 182 ITIDKKNKII----HRKDADLAIIYNDKVKLKK--VVEYQYGRIPIDKNSTTLNI----P 231
K + R D ++ K + V E + I K +I P
Sbjct: 183 DKFVDKKLVSHLTARRITYDTTTVH--KWTIHDYMVRELDGLKEKITKGDRIDSIINMEP 240
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ E S + I K +NI E +++ I + +T+I
Sbjct: 241 SDFLIMKNQQEMLTSPELSDYIVKQKRRGFANI---KEFEIEYHKRIAMSFASFILTIIG 297
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S ++ + S F TI +F +G + P A IP IL ++
Sbjct: 298 VSLSSRKTKGGMGLHLGIGLGLS-FSYILFQTITSTFAVNGNVPPAVAVWIPNILYAGIA 356
Query: 352 ILI 354
+
Sbjct: 357 FFL 359
>gi|228472720|ref|ZP_04057478.1| permease YjgP/YjgQ family protein [Capnocytophaga gingivalis ATCC
33624]
gi|228275771|gb|EEK14537.1| permease YjgP/YjgQ family protein [Capnocytophaga gingivalis ATCC
33624]
Length = 359
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 57/362 (15%), Positives = 125/362 (34%), Gaps = 18/362 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY K Y T L + + ++D E +M + + A V
Sbjct: 2 KIIDRYILKRYFLTYSALFLMFIPIGILVDYAEKNQKMTDN-HAPTEAIIKYYANFVVHF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P + I L +E+V + GIS + L P+ G+ +L +F +L+
Sbjct: 61 ANILFPIFLFLSVIWFTSKLAEKTEIVAMLSSGISYNRFLRPYFYGATILSVFVLLMGMF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + + K + + ++ +I + +F
Sbjct: 121 VVPYSSGVYNEFYGTYLSKDLYSKGSRLY----NQVNKNEYIYVSSFDANTNQGANFVLE 176
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKL---------KKVVEYQYGRIPIDKNSTTLNIPIK 233
D ++ + A+ + +KV ++ + + T LN K
Sbjct: 177 RFDGL-RMTDKITANSIEWVQNDSVKTYRLYNYTHRKVGDWNDIYEKVYQKDTLLNF--K 233
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+++F+E+ K ++ + + E +Y + +T+I +
Sbjct: 234 TTDLLPIEYAAETKNFFELNKFIAEERQKGSPNIRIYELVYYRRWAAIFNVFILTIIGVA 293
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
VS R + +A+G+ GF I + + P+ A +IP + L++
Sbjct: 294 VSSVKKR-GGMGVNLAFGVLIGFSYVFFERIFGIMAEKSGITPLMAVIIPNAMFALLAVY 352
Query: 354 IL 355
++
Sbjct: 353 MI 354
>gi|326799922|ref|YP_004317741.1| permease YjgP/YjgQ family protein [Sphingobacterium sp. 21]
gi|326550686|gb|ADZ79071.1| permease YjgP/YjgQ family protein [Sphingobacterium sp. 21]
Length = 358
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 57/363 (15%), Positives = 131/363 (36%), Gaps = 17/363 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y K YL T ++ + ++ + D++E + + A +P
Sbjct: 2 NIIDKYIIKKYLGTFVFTMAIFTVVAVIFDISERMDDFLKNHAPLSKIVFEYYAGFIPFY 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + P I + I + +E+V G+S + L P+ + + ++ + T++
Sbjct: 62 LNFLSPLINFIAVIFFTAKMADQTEIVPILNGGMSFRRFLRPYFIAASIICLVTLIFNIY 121
Query: 123 IATSGEKI---GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
I K+ ++ + DN K + + ++ F+ + + +F
Sbjct: 122 IIPRTNKLKIGFENIYVKPIDNNSKSSTHMQI-------DKNSFVYIDNFDNDRKVGYNF 174
Query: 180 TSITIDKKNKIIHRKDADLAIIYN--DKVKLKK---VVEYQYGRIPIDKNSTTLNIPIKM 234
T K ++ + AD + + K++ + I S + +
Sbjct: 175 ILETF-KGQELQEKLIADRITWDSVKNNWKIENYTIRIVNGLNEKMIKGTSKDTTLDMSP 233
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
F+ F + + E+ + + + + Y + P +TL+ S+
Sbjct: 234 RDFEIRDNVFMAMTTQELNENIEKEKIRGTGRMTDLKLEKYKRFIYPFSAYILTLMGVSL 293
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S + R + + GI F I F G L P+ AA IP ++ + + + +
Sbjct: 294 SSKKVR-GGIGLSLGVGIALSFTYILFIQFANMFSLKGGLPPLLAAFIPSLIFLGVGLYL 352
Query: 355 LLQ 357
L +
Sbjct: 353 LYK 355
>gi|78222463|ref|YP_384210.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
gi|78193718|gb|ABB31485.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
Length = 418
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 49/366 (13%), Positives = 125/366 (34%), Gaps = 20/366 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL+RY FK + + ++ + L ++ + L +P
Sbjct: 30 MTSILFRYIFKETAVPFVLGMAVFTFVLLMGRLLKLAEMVFAK-GVPFLDVCRLILYMLP 88
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IP L+ ++ F L+ SE+ +A G+ + LL P ++L + T +
Sbjct: 89 SFLLVAIPMAFLLAVLLSFGRLSADSEVTAMKAGGVGLGSLLTPVFTFAVLAYLVTTFIT 148
Query: 121 NPIATSGEKIGID-LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
G L + + + + + + + +H
Sbjct: 149 VFALPWGNTSFKRFLYEVIESRAATTIKEKVFI----DDFPGLVVYIDDYDQTSHQISGI 204
Query: 180 TSITIDKKNKIIHRKDADLAII------YNDKVKLKKVVEYQ----YGRIPIDKNSTTLN 229
++ + A II N ++ L ++ G ++ S L+
Sbjct: 205 LIHDERNPDEPMT-IFASTGIIAAAPEEKNVRLHLVNGSIHRGIDPGGYRLVEFRSYDLH 263
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ ++ + + ++ + ++I + ++N + + +P + +
Sbjct: 264 VDLRQNAKKNQFDEQD-MTLKQLIAS-RGNRQNNEKFRRDVSIELHKRFALPFACIVFAM 321
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+ + ++ RS + + GI + Y +++ K+ + IL A +P + +
Sbjct: 322 VGVPLGIQNQRSGRAG-GFSAGIIILMLYYVVMSAGKTIAEKEILPIPLAVWLPNVFFTA 380
Query: 350 LSILIL 355
+ +L
Sbjct: 381 FGVYLL 386
>gi|257462589|ref|ZP_05626999.1| hypothetical protein FuD12_01974 [Fusobacterium sp. D12]
gi|317060240|ref|ZP_07924725.1| conserved hypothetical protein [Fusobacterium sp. D12]
gi|313685916|gb|EFS22751.1| conserved hypothetical protein [Fusobacterium sp. D12]
Length = 361
Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats.
Identities = 50/360 (13%), Positives = 114/360 (31%), Gaps = 8/360 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K +LK Y L + + + + ++ + E S + +P II
Sbjct: 4 LDIYITKNFLKYFSYSLFSFLAIFVLSQIFKVLRYVNE-GQLSAGEVPLFIGNLLPGIII 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ P L+ ++ + E++ + GI +L+ ++ S + + + + +
Sbjct: 63 NVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPILVSFFISLVVFYLNDRVY 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+L + + + N + KKI E I + + +
Sbjct: 123 PGSVVRNRELRGKEDVEERELPKEKENAF-FRNEEGRYVYYMKKINREKGIMDYVEILDM 181
Query: 185 DKKNKIIHRK-DADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTT--LNIPIKMDGFQK 239
+ I R A K+V Y + + D F
Sbjct: 182 SEDFDKIERIITAKQGKYDFEKKIWIFKEVNLYYPETDRTESRVWIQDEKYRDEPDRFIS 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + +KK + ++ P ++ + ++ +
Sbjct: 242 LSNIVPKQQTIAELKKAIKEGSATGNEIREILSELGKRYSFPFASFVVSFLGLALGSHYV 301
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R + + I G+ Y + ++ G +G L P + IP +L ++ + + + E
Sbjct: 302 R-GMSILNIVISILLGYAYYLVEGAFEALGMNGYLNPFLSGWIPNLLFLAAGLYFMRRAE 360
>gi|317059424|ref|ZP_07923909.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
gi|313685100|gb|EFS21935.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
Length = 362
Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats.
Identities = 51/367 (13%), Positives = 119/367 (32%), Gaps = 14/367 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y K +LK Y L + + + + ++ + E S + + +P
Sbjct: 1 MMKKLDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYVNE-GQLSPGQIPLFIGNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
II + P L+ ++ + E++ + GI +L+ + S L+ + +
Sbjct: 60 GIIINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYLN 119
Query: 121 NPIATSGEKIGIDLIQQW---KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ + +L + + K+K + N + KKI E I +
Sbjct: 120 DRVYPGSVVRNRELRGKEDVEEREVPKEKENAFF----RNVEGRYVYYMKKINRETGIMD 175
Query: 178 DFTSITIDKKNKIIHR-KDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNST--TLNIPI 232
+ + + I R A + Y ++ +
Sbjct: 176 HVEVLDMSENFDKIERMITAKKGRYDFKRKLWVFEDAHIYYPDTDTVEARAFIQEQKYMD 235
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + F S + +KK + ++ P ++ +
Sbjct: 236 EPEYFISLSNIVPKQQTIAELKKAIKEGSATGNEIREILSELGKRYSFPFASFVVSFLGL 295
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
++ + R + + I G+ Y + ++ G +G L P + IP +L ++ +
Sbjct: 296 ALGSHYVR-GMSILNIVISILLGYAYYLVEGAFEALGMNGYLNPFLSGWIPNLLFLAAGL 354
Query: 353 LILLQKE 359
+ + E
Sbjct: 355 YFMRRAE 361
>gi|302342716|ref|YP_003807245.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
gi|301639329|gb|ADK84651.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
Length = 397
Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats.
Identities = 66/372 (17%), Positives = 134/372 (36%), Gaps = 26/372 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P I+ RY + + L ++ + + E+ + + + L +P
Sbjct: 4 PRIIHRYLLREMIGPFFISLGVFTFMLLIAKIMELTDLVVSR-GVGLDVVGRLLLYTLPY 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IP TL+ ++ F ++ E+V +A G+S + L P V +I + T +
Sbjct: 63 FFVFTIPMATLLGVLLAFLRMSGDMEVVALKAAGVSPYAFLPPVAVLAICAWLVTSALAF 122
Query: 122 PIATSGEKIGIDLI-QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
G +L+ Q K D + + + I + LP D
Sbjct: 123 WGLPWGNHRFENLVFQVAKAQTDLALKERVFMDTFPG----MVIYISR-LPGQGQMTDLF 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK-----VKLKKVVEYQYGRIPIDKNSTTLNI----- 230
+ +K + H A I+ ++L + G+ +
Sbjct: 178 IVDEREKGR-HHTIVAKRGKIFPANNDRLILRLYDGTIHSVGQNLRSAQTAAFVTYDIAV 236
Query: 231 --PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
Q+ ++ F E++ +M ++ H Y E + + +P + M
Sbjct: 237 DASTLSAAHQRTTKHEKEMYFGELLAEMDKLPADSMQH-YLIEMEMHKKFSVPFACLVMA 295
Query: 289 LIAASVSLEFSRSNQP-RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
LI + + SR + + +A +F G Y +++ SFGK+G P+ P +L
Sbjct: 296 LIGLPLGM-HSRGGRSWGVAIALVVFLG--YYLMLSAAWSFGKTGDYPPIVGMWAPNLLL 352
Query: 348 ISLSILILLQKE 359
+L++ L ++E
Sbjct: 353 GALAVE-LFRRE 363
>gi|283833699|ref|ZP_06353440.1| putative permease [Citrobacter youngae ATCC 29220]
gi|291071385|gb|EFE09494.1| putative permease [Citrobacter youngae ATCC 29220]
Length = 360
Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats.
Identities = 51/359 (14%), Positives = 118/359 (32%), Gaps = 15/359 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I RY +Y + L +L + + Y + ++ +P
Sbjct: 2 NIFSRYLIRYVFIGFAAAAGILLPLFTTFNLINELDDVSP-GGYRWPQAVIVVLMTLPRN 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + PFI L+ I +L++T EL R+ G+SI+++ + +++ +
Sbjct: 61 LIDLSPFIALLGGIAGLGHLSKTMELTAIRSTGLSIFKIAMITLTAGVMIIALLAVTDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA ++ + + + I K L +
Sbjct: 121 IAAPLQQHALRIRTTAMAQDPNADHQKNNMLWARRGDAFATI---KSLDAKNQPVGIEIF 177
Query: 183 TIDKKNKIIHRKDADLAI-IYNDKVKLKKVVE------YQYGRIPIDKNSTTLNIPIKMD 235
+ A+ + N L+ V E + + + ++ I ++
Sbjct: 178 HYRPDLSLETYIYAEKGRVLKNGTWTLEGVYEKRWLDGRETTEVHKQQQWKSIFTRINLE 237
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ F+ + I + + + + + + PL+ +AM L+A +
Sbjct: 238 MLTMPAGSFSIKQLRSYISYLQDTGQ----PSIEFRVALWQKLGRPLLTLAMMLLAIPFT 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS +A G+ G + Y I+ + G L L P + + +++++
Sbjct: 294 FSIPRSPGIGSRLAMGVIVGLLTYISDQIIVNIGILFDLQVQLTVLCPPVALLIIALIL 352
>gi|255691880|ref|ZP_05415555.1| putative membrane protein [Bacteroides finegoldii DSM 17565]
gi|260622433|gb|EEX45304.1| putative membrane protein [Bacteroides finegoldii DSM 17565]
Length = 365
Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats.
Identities = 54/363 (14%), Positives = 123/363 (33%), Gaps = 20/363 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T ++ + + + V D NE +++ E +P
Sbjct: 7 IKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWSKIIFEYYMNFIPY 66
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S +++ P+++ + ++ + T ++ +
Sbjct: 67 FSNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALTTFMLSS 126
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G ++ ++ + + + + F+
Sbjct: 127 YVIPKGSVTRLNFEDRYIKPKKQNTARNV----QLEVDSGVIAYIDNYNNAMKTGNRFSL 182
Query: 182 ITIDKKNKII----HRKDADLAIIYNDKVKLKKVVEYQYGRIPI-----DKNSTTLNI-P 231
K + R D ++ K + + + + D+ + +N+ P
Sbjct: 183 DKFVDKKLVSHLTARRVTYDTTTVH--KWTIHDYMIRELDGLKEKITKGDRIDSIINMEP 240
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ E S + I+K +NI E +++ I + +T+I
Sbjct: 241 SDFLIMKNQQEMLTSPQLSDYIEKQKRRGFANI---KEFEIEYHKRIAMSFASFILTIIG 297
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S+S ++ + S F TI +F +G + PV A IP IL ++
Sbjct: 298 VSLSSRKTKGGMGLHLGIGLGLS-FSYILFQTITSTFAINGNVPPVIAVWIPNILYAGIA 356
Query: 352 ILI 354
+
Sbjct: 357 FFL 359
>gi|294053783|ref|YP_003547441.1| permease YjgP/YjgQ family protein [Coraliomargarita akajimensis DSM
45221]
gi|293613116|gb|ADE53271.1| permease YjgP/YjgQ family protein [Coraliomargarita akajimensis DSM
45221]
Length = 372
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 51/372 (13%), Positives = 125/372 (33%), Gaps = 22/372 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY K ++ + L + ++ + ++ + + N + +P +
Sbjct: 3 LLDRYVLKEWVVAFVLTLGVVVGVLVLQNMYDSLPDLLS-SNATGPEILFYYMLSLPGYL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P LV + L+R +E++ RA G S++++ V L + +
Sbjct: 62 PTVLPITFLVSLLFSLGTLHRNNEVIAMRATGASLFRISRSLWVAGFALSGLLFYLTAEV 121
Query: 124 ATSGEKIGIDLI-------QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
+ I ++ K + D ++ ++ + N ++ + +
Sbjct: 122 VPMTVERARTFIDNLSYTAKEKKQDVDAREVGLLHNLGFDNRKEGRLWFMNRFSERAWLA 181
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPID-------KNSTT 227
T + R A+ + E Q D +
Sbjct: 182 IGVNVHTRTADGIEVLRVSAEEGFYDEVKGYWVFLRGRELQIDPDTGDEIRLLSFEEKAY 241
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
D ++ S E+ + + + T+++ L+ P + +
Sbjct: 242 PEYTEDPDLMLAMHKKPNELSLLELREIIETVPAEENPAVHAYTTRYFSLLAAPFSCLVL 301
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGF--MLYTIITIMKSFGKSGILLPVAAALIPVI 345
IA ++ R+N ++ G+ + Y +ITI G+ ++ P AA +P
Sbjct: 302 VGIAVPFAVSGVRANP---MIGISKCMGYFAVFYVLITISSILGERHMIAPWLAAWLPNF 358
Query: 346 LTISLSILILLQ 357
+ +S+ + L+
Sbjct: 359 AMLVVSMWLYLR 370
>gi|225619415|ref|YP_002720641.1| Permease [Brachyspira hyodysenteriae WA1]
gi|225214234|gb|ACN82968.1| Permease [Brachyspira hyodysenteriae WA1]
Length = 356
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 65/351 (18%), Positives = 125/351 (35%), Gaps = 12/351 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K +L LL ++LV + DL+ + E P I+ R P
Sbjct: 4 LNAYLLKEFLSFFFGSLLLFVVLVTIADLSSRLSFYTEHPEL-INYFITYHLARAPHNTY 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I P + + V + E++ GIS+++ P + I L +F V +A
Sbjct: 63 YIFPVALMFSSTYVLGTFVKNKEMLAIENSGISLFKFSMPMFIIVIGLCLFLVFFWEFVA 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
K+ + G +Q S PW FI + + ++ + +
Sbjct: 123 APLNKVSFAANDAMR--GREQVSKSGPWQLFGGNNHLYFI--ETYFYKEQYMQNTIIVKL 178
Query: 185 DKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF-- 240
D I R + + K + + + K N P+ + +
Sbjct: 179 DDDGGIQFRVSSPHIQWNNEDRKWYVMDGILTTFSENKEIKVEKVNNYPLDLLERPEHFY 238
Query: 241 -SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S E + + N+ + + ET ++ I + L+A+ S +FS
Sbjct: 239 GRPPLDAMSLSEESHIIKLQKEVNM-NTSKLETDLHYRISYCFSGFIIVLLASLFS-KFS 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ + + I + Y+I+ + +S G++G + AA +P I+ L
Sbjct: 297 TQSVLVVSLVMVIIVALLYYSILMVFRSMGEAGDINAFIAAWMPNIIFAIL 347
>gi|218261075|ref|ZP_03476041.1| hypothetical protein PRABACTJOHN_01705 [Parabacteroides johnsonii
DSM 18315]
gi|218224239|gb|EEC96889.1| hypothetical protein PRABACTJOHN_01705 [Parabacteroides johnsonii
DSM 18315]
Length = 361
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 57/352 (16%), Positives = 122/352 (34%), Gaps = 12/352 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR-VPLIIQQI 66
Y K +L T ++ + + + V D+NE ++ P+ + +P
Sbjct: 11 YIIKQFLGTYIFAIALIIAISVVFDINEKIDKFLS-PDVPLKAIVFDYYMNFIPYFANLF 69
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P T + I L SE++ A G+S +L+ P+ + + ++ + T + I
Sbjct: 70 SPLFTFIAVIFFTSKLADNSEVIAMLASGMSFRRLMLPYAISAGIIALSTFALNAYIIPP 129
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
ID ++ N + + + + + F+ +
Sbjct: 130 ANATRIDFQNKYIKNKKVDYVRSA----QLEIEPGVIAYFDRYDARSGMGYRFSLEHFED 185
Query: 187 KNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPI---DKNSTTLNIPIKMDGFQKFSE 242
K K+I R A+ + L + + + + + + I F
Sbjct: 186 K-KMISRLTANSIKYDSLYNWTLIDYMIRDFDGMREHITEGSRLDTTLTIVPSDFLISVN 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + E+ + K I + + +++ + +T I AS+S +
Sbjct: 245 DCETMTSPELSTYIDRQKKRGIGNIQTFQIEYHKRFAAIMAAFILTSIGASLSSRKIK-G 303
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + G+ F T+ +F +G L P AA IP IL ++I +
Sbjct: 304 GMGLNIGIGLALSFSYILFTTVTSTFAINGNLSPAMAAWIPNILYTFIAIYL 355
>gi|296115280|ref|ZP_06833920.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
23769]
gi|295978183|gb|EFG84921.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
23769]
Length = 372
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 60/369 (16%), Positives = 126/369 (34%), Gaps = 22/369 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G+L Y + L + L+ V+ L E ++ + +S A R+PL+
Sbjct: 14 GVLVGYLTRELLSKIFITAAVIIALMEVLALLEEVTEIMSR-HLGLSGVLYYAVIRLPLL 72
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+P L+ ++ L ++E+ I RA G+S L F+ + LG+ V+V +
Sbjct: 73 FGNAMPLAVLIGALITLVQLTSSNEISIMRAAGLSTAGLFRLFLPAVLGLGVLCVVVDDQ 132
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A E W + + + D T
Sbjct: 133 VAPRSEIAQARWWNS--TAPAPNGVTRDVWFR----TGMTLVNIGGVAHGGRELHDVTVY 186
Query: 183 TIDKKNKIIHRKDADLAIIYNDKV---------KLKKVVEYQYGRIPIDKNSTTLNIPIK 233
D + + + ++ L + + +
Sbjct: 187 RRDDEGALQKVIHLPTVRYFINRWSGVPDHALTVLSPTRVEDVALQDDTRLTLDWPRALT 246
Query: 234 MDGFQKFSEQ--FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
D + SE + + ++ S++S F T+ I++PL M L+A
Sbjct: 247 PDVLLQMSENTPLSIMTMVRVLHNAFPSSQSPAF----FMTEILGRIMLPLTFTVMLLLA 302
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
V R+ + + + +G + ++++ G +G L V A + +++ I
Sbjct: 303 IPVVYIPPRAGARSWLPVWCLGAGLVFVVFQGLLRALGNAGTLPSVVAVFVGIVIFILGV 362
Query: 352 ILILLQKED 360
+ +LL+ E+
Sbjct: 363 VTVLLRIEE 371
>gi|183219955|ref|YP_001837951.1| hypothetical protein LEPBI_I0537 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189910079|ref|YP_001961634.1| permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
gi|167774755|gb|ABZ93056.1| Permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
gi|167778377|gb|ABZ96675.1| Conserved hypothetical protein; putative membrane protein
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 378
Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats.
Identities = 50/360 (13%), Positives = 112/360 (31%), Gaps = 12/360 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY F + KT + L+ ++ + ++ + + S + +P
Sbjct: 18 FRTLDRYLFFDFFKTFIGTLIMLTSMIVIYKFTDVMKYLVS-SKVNQSHVYLHVLYSLPS 76
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ Q++ + V + ELV G+S +++ P + I++ + +
Sbjct: 77 MVDQVVAPALMFSVCFVIGQFSVNKELVAMMVAGVSFMRIITPILFFGIVI-WLVMTLFG 135
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + G + D + + I + ++ EN I F
Sbjct: 136 QIVVIPANKNAQIQFSIMAKGSNRLIDFVYQLHIKGKKGFYYVY-WIDEKENTIKGGFNY 194
Query: 182 ITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGRI-----PIDKNSTTLNIPIKM 234
I + + A L E ++ T + P +
Sbjct: 195 FEITPDGYPTYTVSSQKAKFIPSPHSWVLYDAEEVRFNENLELVSRTKYAEKTYDFPEDL 254
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
F K +F+E+ ++ S + Q + +PLM + + A
Sbjct: 255 AYFSKPIRNPEEMNFFELADEIQ-SRITKGIPFRNVIVQQHMAFSMPLMSFVVVTLGALA 313
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS + I + Y + + K+ ++G L I ++ + + +
Sbjct: 314 GAITKRSAGVA-SLGLTIAVVLLYYILNSTAKTLAENGALPIWIGMWITPVIFTTAAYYL 372
>gi|253583477|ref|ZP_04860675.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
gi|251834049|gb|EES62612.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
Length = 358
Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats.
Identities = 53/364 (14%), Positives = 128/364 (35%), Gaps = 13/364 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y + +K + F + +F+ID+ + + SI + + +P I
Sbjct: 2 KIIEKYILEE-VKMPILFGISLFTFIFLIDIIVAMMENIIVKGISIIDIMRILSFYLPPI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q IP + ++ F RTSE +IG+ + +++ P + + + +F +
Sbjct: 61 LSQTIPMGIFLGVMLTFSKFTRTSESTAMSSIGMDLREIVKPIFILACITTLFIFFLQES 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + + + ++ + + + +I ++ I +
Sbjct: 121 IIPRSFTKLQYITTKIAYENPVFQLKEKTFI---DEVDEYNLYIDRIEGKDRIAQGVLIF 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GRIPIDKNSTTLNIPIK--MDGF 237
D+ + A + + + Y + G+ + +P+ DG
Sbjct: 178 QKDEDVEFPTVLVGKEAYWKDSSMVITDSKFYDFDKDGKEKLRGEFDDKKVPLTAYFDGI 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S ++K+M K+ + + + +PL + ++L+ +S+
Sbjct: 238 DIKVKDIEAMSISMLMKEMKELPKNEKIP---YKVEINRKLALPLSTIMLSLLGVFISIG 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + A + F T + I G + P P I+ ++ +
Sbjct: 295 HHRSGK-GANFALSLAVIFSYITFLNIGMVMANRGKVPPFIGVWTPNIILFLVTFYFYKK 353
Query: 358 KEDG 361
K G
Sbjct: 354 KSRG 357
>gi|265763912|ref|ZP_06092480.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263256520|gb|EEZ27866.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 365
Score = 132 bits (333), Expect = 7e-29, Method: Composition-based stats.
Identities = 53/359 (14%), Positives = 120/359 (33%), Gaps = 12/359 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T ++ + + + V D NE ++ E + +P
Sbjct: 7 IKRLDLYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKFMERSAPWSAIIFDYYMNFIPY 66
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S ++L P+++ + ++ I T ++ +
Sbjct: 67 FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMISAGIIAISTFILGS 126
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G +D ++ I + N F+
Sbjct: 127 YVIPRGSVTRLDFEDKYVKKKKTTYVHNI----QLEIDTGVIAYIDNYQDYNKTGNRFSL 182
Query: 182 ITIDKKNKIIHRKDADLAIIYN---DKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMD 235
K K++ A +K +K + + + + IP++
Sbjct: 183 DKFVDK-KLVSHLTARSITYDTTAVNKWTIKDYMIRNLDGLKETIVRGDKMDFIIPMEPA 241
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F Q + ++ + + I + E +++ I + +T+I S+S
Sbjct: 242 DFMIMRNQQEMLTSPQLSAYIDKQKQRGIANIKEFEIEYHKRIAMSFASFILTVIGVSLS 301
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ + S F T+ +F +G + P+ A IP +L ++ +
Sbjct: 302 SRKTKGGMGLHLGIGLGLS-FSYILFQTVASTFAVNGNMPPMIAMWIPNLLYALIAFYL 359
>gi|315917902|ref|ZP_07914142.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
gi|313691777|gb|EFS28612.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
Length = 362
Score = 132 bits (333), Expect = 7e-29, Method: Composition-based stats.
Identities = 51/367 (13%), Positives = 119/367 (32%), Gaps = 14/367 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y K +LK Y L + + + + ++ + E S + + +P
Sbjct: 1 MMKKLDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYVNE-GQLSPGQIPLFIGNLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
II + P L+ ++ + E++ + GI +L+ + S L+ + +
Sbjct: 60 GIIINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYLN 119
Query: 121 NPIATSGEKIGIDLIQQW---KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ + +L + + K+K + N + KKI E I +
Sbjct: 120 DRVYPGSVVRNRELRGKEDVEEREVPKEKENAFF----RNVEGRYVYYMKKINRETGIMD 175
Query: 178 DFTSITIDKKNKIIHR-KDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNST--TLNIPI 232
+ + + I R A + Y ++ +
Sbjct: 176 HVEVLDMSENFDKIERMITAKKGRYDFKRKLWVFEDAHIYYPDTDTVEARAFIQEQKYMD 235
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + F S + +KK + ++ P ++ +
Sbjct: 236 EPEYFISLSNIIPKQKTIAELKKAIKEGSATGNEIREILSELGKRYSFPFASFVVSFLGL 295
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
++ + R + + I G+ Y + ++ G +G L P + IP +L ++ +
Sbjct: 296 ALGSHYVR-GMSILNIVISILLGYAYYLVEGAFEALGMNGYLNPFLSGWIPNLLFLAAGL 354
Query: 353 LILLQKE 359
+ + E
Sbjct: 355 YFMRRAE 361
>gi|217966587|ref|YP_002352093.1| permease YjgP/YjgQ family protein [Dictyoglomus turgidum DSM 6724]
gi|217335686|gb|ACK41479.1| permease YjgP/YjgQ family protein [Dictyoglomus turgidum DSM 6724]
Length = 364
Score = 132 bits (333), Expect = 7e-29, Method: Composition-based stats.
Identities = 70/354 (19%), Positives = 120/354 (33%), Gaps = 11/354 (3%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+Y F L + G ILV +I + + + S L ++P +
Sbjct: 9 HKYIFSEILGPFFLGIFG-FILVMLIQILYEFSDFIIMRRVSFEVVLKLLYYKIPSLFVF 67
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+IP L I F L R E+ R+ GI L ++ SILL + +
Sbjct: 68 VIPVSLLFAIIFSFGRLMRDGEIFAMRSSGIYFLSLTLTPLLFSILLSLILWFFTYSLIP 127
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
LIQ++ + + ++ + KKI+ ++ ++
Sbjct: 128 ESNYRSNRLIQKYFFLNPAPIKGENVFF---HDEEGRYYYVKKIIENRNVMQNVLVFDTS 184
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-----DKNSTTLNIPIKMDGFQKF 240
NK A+ AI D + LK V + G +N+P
Sbjct: 185 SSNKYPIIYTAEEAIWNRDSLILKNGVVHHLGDDSFVVWEGKFEEFKINLPQDFMYIFYR 244
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
E+ K+++ K + Y I + + L+ SV L R
Sbjct: 245 DRTPQEMPTNELKKRINV-YKKAGISARSYLVEDYLRIAQSIAVPIFALMGFSVILLTGR 303
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ A+ I F Y I +SFG+ + P +A +P I SLS+ +
Sbjct: 304 GGRLW-GTAFSIIIAFFYYGFNIIARSFGEYAVFSPFLSAWLPNITLGSLSLGV 356
>gi|327402663|ref|YP_004343501.1| permease YjgP/YjgQ family protein [Fluviicola taffensis DSM 16823]
gi|327318171|gb|AEA42663.1| permease YjgP/YjgQ family protein [Fluviicola taffensis DSM 16823]
Length = 373
Score = 132 bits (333), Expect = 8e-29, Method: Composition-based stats.
Identities = 57/377 (15%), Positives = 130/377 (34%), Gaps = 33/377 (8%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL RY + +L T + L M+L V D+ E ++ + S A++ +
Sbjct: 1 MLKILDRYIIRKFLSTFFFMLGIIMLLAMVFDIAE---RLSDFIEKQASFKAIVFDYYLN 57
Query: 61 LIIQ---QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++ I + I + + +E++ G +++ P+++ + +L + ++
Sbjct: 58 FLLYYGNTFSSMIVFIAVIWFTAKMAQDAEIIPMLFSGRPFIRIIRPYMIAATILMLLSL 117
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
++ + + ++ +D + + + ++ + + + E ++
Sbjct: 118 VLNHFVLPRANRVRLDFEESFYRDRLLVENYNAEFP------GNELVHYSTYNSEENMIN 171
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDKNST--------- 226
DF D +N++IH A A + + +L V E + S
Sbjct: 172 DFVIERYDSQNRLIHFMKARTASVIPGVKRWRLTDVFERKVSYSDTSGTSKGEMESIIQK 231
Query: 227 ---------TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
+P +D + +F E+ ++ E + Y
Sbjct: 232 HQLTENHLKDTTLPYNVDDIAVRDNVVEAMTFRELSSFIAKEKAKGNPSVAMYEIELYQR 291
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
P +TLI SVS R I + F+ + I + V
Sbjct: 292 SSYPFATYVLTLIGVSVSSRKKRGGIGINIAIG-LLFVFIYIFAMKITTVAATTVGFPSV 350
Query: 338 AAALIPVILTISLSILI 354
AA +P ++ L++ +
Sbjct: 351 AAVWLPNVMFGILALFL 367
>gi|53713591|ref|YP_099583.1| hypothetical protein BF2302 [Bacteroides fragilis YCH46]
gi|60681871|ref|YP_212015.1| hypothetical protein BF2391 [Bacteroides fragilis NCTC 9343]
gi|253565580|ref|ZP_04843035.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|52216456|dbj|BAD49049.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
gi|60493305|emb|CAH08089.1| putative membrane protein [Bacteroides fragilis NCTC 9343]
gi|251945859|gb|EES86266.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|301163363|emb|CBW22913.1| putative membrane protein [Bacteroides fragilis 638R]
Length = 365
Score = 132 bits (333), Expect = 8e-29, Method: Composition-based stats.
Identities = 53/359 (14%), Positives = 120/359 (33%), Gaps = 12/359 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T ++ + + + V D NE ++ E + +P
Sbjct: 7 IKRLDLYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKFMERSAPWSAIIFDYYMNFIPY 66
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S ++L P+++ + ++ I T ++ +
Sbjct: 67 FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMISAGIIAISTFILGS 126
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G +D ++ I + N F+
Sbjct: 127 YVIPRGSVTRLDFEDKYVKKKKTTYVHNI----QLEIDTGVIAYIDNYQDYNKTGNRFSL 182
Query: 182 ITIDKKNKIIHRKDADLAIIYN---DKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMD 235
K K++ A +K +K + + + + IP++
Sbjct: 183 DKFVDK-KLVSHLTARSITYDTTAVNKWTIKDYMIRNLDGLKETIVRGDKMDSIIPMEPA 241
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F Q + ++ + + I + E +++ I + +T+I S+S
Sbjct: 242 DFMIMRNQQEMLTSPQLSAYIDKQKQRGIANIKEFEIEYHKRIAMSFASFILTVIGVSLS 301
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ + S F T+ +F +G + P+ A IP +L ++ +
Sbjct: 302 SRKTKGGMGLHLGIGLGLS-FSYILFQTVASTFAVNGNMPPMIAMWIPNLLYALIAFYL 359
>gi|189501496|ref|YP_001957213.1| permease YjgP/YjgQ family protein [Candidatus Amoebophilus
asiaticus 5a2]
gi|189496937|gb|ACE05484.1| permease YjgP/YjgQ family protein [Candidatus Amoebophilus
asiaticus 5a2]
Length = 357
Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats.
Identities = 63/361 (17%), Positives = 135/361 (37%), Gaps = 14/361 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY K +L + L+ L ++++ +ID+ E N+ S A +P +
Sbjct: 2 KLLDRYILKKFLFSFLFILCLIILIITLIDITEK-NEYFIRHKLSFREIADYYYNFLPFM 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P + I V L + +E++ + G+S + L P+++G+ L IF ++I
Sbjct: 61 TNMVSPITIFITTIFVTSRLAQRTEIIAILSGGVSFVRFLVPYLIGATFLAIFNFMLIGW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I K + ++ D+ + S I D ++ N + D T
Sbjct: 121 ILADANKKRVAFEIEYVDSPYRSSSRNIHIK----LSTDTYLYVGYYRSYNGLGTDVTLE 176
Query: 183 TIDKKNKIIHRKDAD--LAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPIKMDGF 237
TI + N+++ + A + + + +LK + + + S L + + + F
Sbjct: 177 TI-RDNRLMEKISAKAIRWVEESGQWQLKDWICRKIDGLDEHITSGKAMDLTLNLHPEDF 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + E+ K + + + T+ Y + P + +TL+ VS
Sbjct: 236 SINPKLHEMLTLTELDKHIQKLREKGTDNLNFFLTEKYVRYMSPFAAIILTLMGVVVSAR 295
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
SR + +A G + + + +P I+ + ++L
Sbjct: 296 KSR-GGVGLQIALGFILALIYIAFFLFARGAANVKGNNLLLTIWMPNIVFSII--TLILY 352
Query: 358 K 358
K
Sbjct: 353 K 353
>gi|320537761|ref|ZP_08037684.1| hypothetical protein HMPREF9554_02438 [Treponema phagedenis F0421]
gi|320145384|gb|EFW37077.1| hypothetical protein HMPREF9554_02438 [Treponema phagedenis F0421]
Length = 356
Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats.
Identities = 68/363 (18%), Positives = 122/363 (33%), Gaps = 19/363 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNY-----SISRGAVLAAT 57
IL RY + + T L + ++F I L EI + LP Y ++ +
Sbjct: 2 KILQRYLLQIFFPTAL------VAILFFILLLEIGDLFANLPTYLTNGVGLAPILQVMYF 55
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
P I +P L L +EL A G+ IW L+ P V+ + +
Sbjct: 56 YFPKCISFAMPLGVLFAGAYTMGTLYARNELTSVFASGMPIWTLVLPLVILGFIFSVGMF 115
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ + + L + + ++ I + +N I A+ E
Sbjct: 116 FFEDRVVIHTQYKKNRLTAKLLETDKDLSTNDIVVLSENNK---IIYSAEVYDAETKNLL 172
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEY---QYGRIPIDKNSTTLNIPIKM 234
+ I +I +AI D +L K Y + G+I
Sbjct: 173 NLQIIVRTDDGEIEKVVTTAVAIWEGDAWELTKPAVYIFSKNGQIQFTDKLAAKEFTEAP 232
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ FQ+ S E + ++ + Q+Y P + + + SV
Sbjct: 233 ENFQRNITSIDELSVSEAATYIQKLKRTGRPYTEEL-AQYYRRFSFPFTIFLVLFFSVSV 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
F R N + + + + + Y + K + P+A AL+P ++ SLSI +
Sbjct: 292 GGRF-RKNILLMSLLFSLLIATVYYVTEMVTMLLAKWEYISPLAGALLPFLIFTSLSIFL 350
Query: 355 LLQ 357
L
Sbjct: 351 LRH 353
>gi|154492560|ref|ZP_02032186.1| hypothetical protein PARMER_02194 [Parabacteroides merdae ATCC
43184]
gi|154087785|gb|EDN86830.1| hypothetical protein PARMER_02194 [Parabacteroides merdae ATCC
43184]
Length = 361
Score = 131 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 57/352 (16%), Positives = 123/352 (34%), Gaps = 12/352 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR-VPLIIQQI 66
Y K +L T ++ + + + V D+NE ++ P+ + +P
Sbjct: 11 YIIKQFLGTYIFAIALIIAISVVFDINEKIDKFLS-PDVPLKAIVFDYYMNFIPYFANLF 69
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P T + I L SE++ A G+S +L+ P+ + + ++ + T ++ I
Sbjct: 70 SPLFTFIAVIFFTSKLADNSEVIAMLASGMSFRRLMLPYAISAGIIALSTFVLNAYIIPP 129
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
ID ++ N + + + + + F+ +
Sbjct: 130 ANATRIDFQNKYIKNKKVDYVRSA----QLEIEPGVIAYFDRYDARSGMGYRFSLEHFED 185
Query: 187 KNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPI---DKNSTTLNIPIKMDGFQKFSE 242
K K+I R A+ + L + + + + + + I F
Sbjct: 186 K-KMISRLTANSIKYDSLYNWTLIDYMIRDFDGMREHITEGSRMDTTLTIVPSDFLISVN 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + E+ + K I + + +++ + +T I AS+S +
Sbjct: 245 DCETMTSSELSTYIDRQKKRGIGNIQTFQIEYHKRFAAIMAAFILTSIGASLSSRKIK-G 303
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + G+ F T+ +F +G L P AA IP IL ++I +
Sbjct: 304 GMGLNIGIGLALSFSYILFTTVTSTFAINGNLSPAMAAWIPNILYTFIAIYL 355
>gi|255009350|ref|ZP_05281476.1| hypothetical protein Bfra3_09423 [Bacteroides fragilis 3_1_12]
gi|313147107|ref|ZP_07809300.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313135874|gb|EFR53234.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 365
Score = 131 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 55/359 (15%), Positives = 120/359 (33%), Gaps = 12/359 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L Y K +L T ++ + + + V D NE ++ E + +P
Sbjct: 7 IKRLDLYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKFMERSAPWSAIIFDYYMNFIPY 66
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S ++L P+++ + ++ I T ++ +
Sbjct: 67 FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMISAGIIAISTFILGS 126
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G +D ++ I + N F+
Sbjct: 127 YVIPRGSVTRLDFEDKYVKKKKTTYVHNI----QLEIDTGVIAYIDNYQDYNKTGNRFSL 182
Query: 182 ITIDKKNKIIHRKDADLAIIYN---DKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMD 235
K K++ A +K +K + + I + IP++
Sbjct: 183 DKFVDK-KLVSHLTARSITYDTTAVNKWTIKDYMIRNLDGLKETIIRGDKLDSIIPMEPA 241
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F Q + ++ + + I + E +++ I + +T+I S+S
Sbjct: 242 DFMIMRNQQEMLTSPQLSAYIDKQRQRGIANIKEFEIEYHKRIAMSFASFILTVIGVSLS 301
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ + S F T+ +F +G + PV A IP +L ++ +
Sbjct: 302 SRKTKGGMGLHLGIGLGLS-FSYILFQTVASTFAVNGNMPPVIAMWIPNLLYALIAFYL 359
>gi|313674434|ref|YP_004052430.1| permease yjgp/yjgq family protein [Marivirga tractuosa DSM 4126]
gi|312941132|gb|ADR20322.1| permease YjgP/YjgQ family protein [Marivirga tractuosa DSM 4126]
Length = 357
Score = 131 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 125/359 (34%), Gaps = 16/359 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL +Y K +L T ++ +L + +V VID E + E N + +P I
Sbjct: 2 KILDKYILKKFLSTFVFVVLIILAIVTVIDYTEKNDDFMEH-NLGLIDVLPYYGAFIPWI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I P + + V + +E+V A G+S +LL P+++G+ L+ + + +
Sbjct: 61 GNLITPITIFIAAVFVTSKMAGHTEIVAMLASGMSFRRLLVPYMIGAGLVALSSFYLNAY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ K I + I + + + + + FT
Sbjct: 121 VIPDANKTRIAFETAYIKKPFYFTERDIHLK----IAPETYAYMESYNNQRDVGYRFTLE 176
Query: 183 TIDKKN----KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMD 235
I+ KN R + D A K+K ++ + + + I
Sbjct: 177 LIEDKNLKEKLSARRIEWDSAQ---SNWKVKDWTLRKFDGLTETYSEGKELDTVLNITPK 233
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F + + E+ +S + + + Y + P + +T I +S
Sbjct: 234 DFGNTYGLQETLTLTELNDYISLLKERGADNVKIYLIERYIRFMAPFAAIILTFIGVILS 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ R +A G F+ + K+ ++ + P+ A +P I + +++
Sbjct: 294 SKKKR-GGTGFQIALGFVIAFIFIIFFILSKAIAENSTMNPILAVWLPNITFSIVGLIL 351
>gi|257452882|ref|ZP_05618181.1| hypothetical protein F3_07434 [Fusobacterium sp. 3_1_5R]
Length = 361
Score = 131 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 50/363 (13%), Positives = 118/363 (32%), Gaps = 14/363 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K +LK Y L + + + + ++ + E S + + +P II
Sbjct: 4 LDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYVNE-GQLSPGQIPLFIGNLLPGIII 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ P L+ ++ + E++ + GI +L+ + S L+ + + + +
Sbjct: 63 NVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYLNDRVY 122
Query: 125 TSGEKIGIDLIQQW---KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+L + + K+K + N + KKI E I +
Sbjct: 123 PGSVVRNRELRGKEDVEEREVPKEKENAFF----RNVEGRYVYYMKKINRETGIMDHVEV 178
Query: 182 ITIDKKNKIIHR-KDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNST--TLNIPIKMDG 236
+ + + I R A + Y ++ + + +
Sbjct: 179 LDMSENFDKIERMITAKKGRYDFKRKLWVFEDAHIYYPDTDTVEARAFIQEQKYMDEPEY 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F S + +KK + ++ P ++ + ++
Sbjct: 239 FISLSNIVPKQQTIAELKKAIKEGSATGNEIREILSELGKRYSFPFASFVVSFLGLALGS 298
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ R + + I G+ Y + ++ G +G L P + IP +L ++ + +
Sbjct: 299 HYVR-GMSILNIVISILLGYAYYLVEGAFEALGMNGYLNPFLSGWIPNLLFLAAGLYFMR 357
Query: 357 QKE 359
+ E
Sbjct: 358 RAE 360
>gi|82524032|emb|CAI78710.1| hypothetical protein [uncultured Flavobacteriaceae bacterium]
Length = 358
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 127/358 (35%), Gaps = 11/358 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K YL T LL + + ++L E +M E + +
Sbjct: 2 KILDWYILKRYLFTFFMMLLLFIPIGITVNLAEKIGKMLEN-EVPLKAIVIFYLNFTVHF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P + I L +E++ + G+S + L P+++G+ ++G + +
Sbjct: 61 AYLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGVSFSRFLRPYMIGASIIGGLALFLGMY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ K + ++ K D+ + QI++ + FI N + +FT
Sbjct: 121 LTPIASKGFNEFEYKYLYPNRKTTQDVNVFRQINDNE---FIYVSSFDLNNKLGINFTLE 177
Query: 183 TIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGF 237
I + NK+ ++ A + +L V+ G+I + + + ++
Sbjct: 178 HI-EDNKLTYKISAKTIKYIAKDTTYRLVDYVKRTVGKIEDELVFERNKDTLFAFDVEDL 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ E+ K + + R E Y +P+ + +T+IA +VS
Sbjct: 237 TPVIYIAEILPYTELTKFIEKEKTRGSSNIGRYELVLYRKWSLPVSVFILTIIAVAVS-S 295
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + +A GI + I + + A P ++ L+ +L
Sbjct: 296 IKRRGGMGVNLAIGICIAMVFVFFDKIFGVLAEQSNFPSIIAVWFPNVVFGILAFYLL 353
>gi|189485655|ref|YP_001956596.1| permease YjgP/YjgQ family protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287614|dbj|BAG14135.1| permease YjgP/YjgQ family protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 361
Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats.
Identities = 64/365 (17%), Positives = 140/365 (38%), Gaps = 18/365 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMG-ELPNYSISRGAVLAATR-VP 60
IL++Y K ++K L+ + LV +I +E+ Q + N + ++ +P
Sbjct: 2 KILYKYITKIFVKIFLFT-TAVIALVGII--SELFRQTNLYIDNKTPFYLILIHLLSDMP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ Q +P L+ + +L++ +E+ +A GI+I +++ F + ++G +
Sbjct: 59 WWLIQALPISALLALLFALGDLSKNNEITAIKAAGINISRIIILFFIMGFVIGTGDFAIK 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I + I++ K +K + I + I + E ++ ++
Sbjct: 119 EFIVPKT-SLYNKAIEKEKIQKEKINIKTEFYSLIVPALSNTRITIDHLNTEENVMKNIA 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI---PIDKNSTTLNIPIKMDGF 237
K KI H A++ I ND LK + + NI IK +
Sbjct: 178 VEKYSDKFKIEHLILAEVGIWENDSWLLKNGIIRNFNANFWNETYFEQYNSNIHIKPEHM 237
Query: 238 QKFS-----EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
E + + I ++ ++ + +F + +V M +I
Sbjct: 238 AMAIQDVNYETMNMHALKKYINQLRLFGQTTVRERIILNIRFAAVYAY---IVVM-MIGI 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
++ F + + + + + I KS G++ IL P AA +P ++ ++ I
Sbjct: 294 PFAIGFENKLGKILSSTLAMTAALIYWGTQAITKSLGENLILSPFIAAWLPNLIFSAIGI 353
Query: 353 LILLQ 357
+L++
Sbjct: 354 YLLIK 358
>gi|257466753|ref|ZP_05631064.1| hypothetical protein FgonA2_04885 [Fusobacterium gonidiaformans
ATCC 25563]
Length = 361
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 50/363 (13%), Positives = 118/363 (32%), Gaps = 14/363 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K +LK Y L + + + + ++ + E S + + +P II
Sbjct: 4 LDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYVNE-GQLSPGQIPLFIGNLLPGIII 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ P L+ ++ + E++ + GI +L+ + S L+ + + + +
Sbjct: 63 NVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYLNDRVY 122
Query: 125 TSGEKIGIDLIQQW---KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+L + + K+K + N + KKI E I +
Sbjct: 123 PGSVVRNRELRGKEDVEEREVPKEKENAFF----RNVEGRYVYYMKKINRETGIMDHVEV 178
Query: 182 ITIDKKNKIIHR-KDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNST--TLNIPIKMDG 236
+ + + I R A + Y ++ + + +
Sbjct: 179 LDMSENFDKIERMITAKKGRYDFKRKLWVFEDAHIYYPDTDTVEARAFIQEQKYMDEPEY 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F S + +KK + ++ P ++ + ++
Sbjct: 239 FISLSNIIPKQKTIAELKKAIKEGSATGNEIREILSELGKRYSFPFASFVVSFLGLALGS 298
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ R + + I G+ Y + ++ G +G L P + IP +L ++ + +
Sbjct: 299 HYVR-GMSILNIVISILLGYAYYLVEGAFEALGMNGYLNPFLSGWIPNLLFLAAGLYFMR 357
Query: 357 QKE 359
+ E
Sbjct: 358 RAE 360
>gi|94266928|ref|ZP_01290581.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
gi|93452380|gb|EAT02999.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
Length = 359
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 53/347 (15%), Positives = 128/347 (36%), Gaps = 20/347 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + + L G + + ++D E + + ++PLI
Sbjct: 2 KLLDRYLITSFGRNLATVLGGLLAIYLLVDFFERVDSFLD-AGLGTGGAVRYLLLKIPLI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL---- 118
I+Q++P L+ I+ LNR EL+ +A G+S +++ P ++ + + +
Sbjct: 61 IEQLLPVALLLAGIITLGLLNRRHELMALQAAGLSTRRIIRPLLLAAFACTLLGMASSQW 120
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
++ P + ++ ++Q ++ G +++ +I Q+ + + D
Sbjct: 121 LLPPTMSELNRLWHQEVRQQENRGIERQG------RIYYRGQEGIYSFRPAADSENRLAD 174
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIK 233
F+ +T D+ ++ A A K L++ + D L +P +
Sbjct: 175 FSYLTWDRDYRLAQLIFATRASWDGRKWLLEEGQLKEKANGDDDFVVDYFERRQLALPEE 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL--MLVAMTLIA 291
F + R+ + + + S ++ +A I + + + I
Sbjct: 235 PADFFIPPYALSERALSTLFSQATAS--ADTPQRRQARLAIQHKISYIFLGLPLLLIGIP 292
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+++ R + + F F+ + + + +S +G L P
Sbjct: 293 LLLAMSRGRGRDLALAIPAASFLAFITWGLWSFGQSLAAAGQLPPFI 339
>gi|120434961|ref|YP_860647.1| hypothetical protein GFO_0597 [Gramella forsetii KT0803]
gi|117577111|emb|CAL65580.1| conserved hypothetical protein, membrane [Gramella forsetii KT0803]
Length = 341
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/344 (16%), Positives = 133/344 (38%), Gaps = 11/344 (3%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVV 78
L+ + + ++L E +++ E A + P + I
Sbjct: 1 MMLVLFIPIGITVNLAEKIDKILEN-EVPFIEVAYYYLDFTIYFANLLFPIFLFLSVIWF 59
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
L +E+V + G+S ++ L P+++G+ ++ I +++ +A K + Q+
Sbjct: 60 TSKLAMNTEIVAFLSSGVSFYRFLRPYLIGATIVCISALVLAMYLAPQASKGFNEFKYQY 119
Query: 139 KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADL 198
G++ + + QI++ + +I A P++ +FT + N++ + A
Sbjct: 120 LKRGEQTQETSDVYRQINDNE---YIYASHFQPKSKSARNFTLEHF-EGNELKFKISASN 175
Query: 199 AII--YNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKMDGFQKFSEQFASRSFYEII 253
+ KL +V + G+ S +P + D S + ++ E+
Sbjct: 176 LRYSEEDSLYKLSRVDKRIIGKEEDSIMFMRSLDTILPFEFDELTPESYIAETLNYTELN 235
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+ + + + R Y IP+ +T+IA +V+ F R + +A GI
Sbjct: 236 EFIEKERRRGSGNINRYLVVAYKRWSIPISAFILTIIAVAVA-SFKRRGGMGVNLAVGIT 294
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F+ + + + P+ A P I+ L++++L +
Sbjct: 295 LAFIFIFFDKVFGTMAEQSTFSPLIAVWFPNIVFGVLAVVLLFR 338
>gi|67922983|ref|ZP_00516478.1| permease YjgP/YjgQ [Crocosphaera watsonii WH 8501]
gi|67855202|gb|EAM50466.1| permease YjgP/YjgQ [Crocosphaera watsonii WH 8501]
Length = 394
Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 61/368 (16%), Positives = 145/368 (39%), Gaps = 38/368 (10%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY F L L+ + L + + L ++ ++ E +S + ++P
Sbjct: 22 IMDRYLFIELLLPFLFGMGIFTSLGLSIGSLFDLVRRVTE-SGLMLSVALKVLLLKLPGF 80
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ ++ + L+ SE++ R++G+SI++L+ P ++ ++ +V +
Sbjct: 81 VSLAFPMAMLLAALMAYTRLSSDSEIIALRSLGVSIYRLIIPVILFGFMVTGCAFIVNDW 140
Query: 123 IATSGEKIGIDLIQQ---WKDNGDKQKSDIIPW---MQISNPQQDIFI----GAKKILPE 172
IA + +++ + K+++ + P +Q N Q+ + A++ E
Sbjct: 141 IAPAATHEAAVTLERAVNQERPDFKERNIVYPEYKTIQEENGQEATVLSRLFYAEEYNGE 200
Query: 173 NHIWEDFTSITIDKKNKIIHRKDA------DLAIIYNDKVKL-------KKVVEYQYGRI 219
T + N+I+ + A + +N + L + +V +Q+ ++
Sbjct: 201 QMQGLTILDRTQEGVNQIVTSESATWNISSNTWDFFNGTIYLIAPDGSYRNIVRFQHQQL 260
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
+ + P+ + ++ + E +K M S + + +
Sbjct: 261 ALPRA------PLDLANRRQNFTEMTIAETKEYLKAMQLSGNEKRI--RKVQVRLQEKYA 312
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG--FMLYTIITIMKSFGKSGILLPV 337
+P + + L+ A++ + ++G+ G F Y + + S G GIL P
Sbjct: 313 LPFVCLIFGLVGAAIGVRPQ---NTNKSTSFGVCVGLIFGYYLLAFMSTSLGIWGILTPF 369
Query: 338 AAALIPVI 345
A +P I
Sbjct: 370 LGAWLPNI 377
>gi|29346244|ref|NP_809747.1| hypothetical protein BT_0834 [Bacteroides thetaiotaomicron
VPI-5482]
gi|253568323|ref|ZP_04845734.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298385619|ref|ZP_06995177.1| membrane protein [Bacteroides sp. 1_1_14]
gi|29338139|gb|AAO75941.1| putative permease [Bacteroides thetaiotaomicron VPI-5482]
gi|251842396|gb|EES70476.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298261760|gb|EFI04626.1| membrane protein [Bacteroides sp. 1_1_14]
Length = 365
Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 58/364 (15%), Positives = 118/364 (32%), Gaps = 20/364 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ L Y K +L T ++ + + + V D NE +++ E +P
Sbjct: 6 LIKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWDKIIFEYYMNFIP 65
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
P + I L SE++ + G+S +++ P+++ + ++ T ++
Sbjct: 66 YFSNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIAAATFMMS 125
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ I G ++ ++ + + F+
Sbjct: 126 SFIIPKGSVTRLNFEDKYIKPKKVNSVRNV----QLEVDSGVIAYIDNYNDGMKTGNRFS 181
Query: 181 SITIDKKNKII----HRKDADLAIIYNDKVKLKK--VVEYQYGRIPIDKNSTTLNI---- 230
K + R D + +K + V E + I K +I
Sbjct: 182 LDKFVDKKLVSHLTARRITYDTTTV--NKWTIHDYMVRELDGLKEKITKGDRIDSIINMD 239
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P + E S E I+K +NI E +++ I + +T+I
Sbjct: 240 PSDFLIMKNQQEMLTSPELSEYIEKQKRRGFANI---KEFEIEYHKRIAMSFASFILTII 296
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
S+S ++ + S F TI +F +G + P A IP IL +
Sbjct: 297 GVSLSSRKTKGGMGLHLGIGLGLS-FSYILFQTITSTFAINGNVPPAIAVWIPNILYAGI 355
Query: 351 SILI 354
+ +
Sbjct: 356 AFYL 359
>gi|325104566|ref|YP_004274220.1| permease YjgP/YjgQ family protein [Pedobacter saltans DSM 12145]
gi|324973414|gb|ADY52398.1| permease YjgP/YjgQ family protein [Pedobacter saltans DSM 12145]
Length = 364
Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats.
Identities = 59/354 (16%), Positives = 127/354 (35%), Gaps = 16/354 (4%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + YL T ++ + ++ V D++E + + A +P + +
Sbjct: 14 YIIRKYLGTFVFTMAIFTLISVVFDISEKLDDFLKSRATFSQVVFEYYAGFIPFYLNFLN 73
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P I + I + +E+V G S + L P+ V + ++ IF + +
Sbjct: 74 PLINFISVIFFTAKMADQTEIVPILTSGASFNRFLRPYFVAATVIFIFNIGFNLFVIPET 133
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
++ I+ + D ++++ + + +I + + F+ DKK
Sbjct: 134 NRLMINFENTYTKIKDTSRNNVHLQL-----DSNTYIYMESFDNLRNSGYKFSLEKFDKK 188
Query: 188 N----KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL---NIPIKMDGFQKF 240
+ + R D + K K++ + + T+ + +K F
Sbjct: 189 DLKEKLMADRISWDS---VSHKWKIENYTIRYVDGLKEKMENGTVKDTTLDMKPIDFDIR 245
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+++ +F+E+ +K+ E + Y P +TLI ++S R
Sbjct: 246 DNIYSAMNFWELNEKIEKEKIRGSGVMVNLELEKYKRWTYPFSTYVLTLIGVALSSRKVR 305
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + S F+ I F G L P+ A LIP +L +L + +
Sbjct: 306 GGVGLPLGLGILLS-FVYILFIQFANVFALKGGLPPIIAVLIPNMLFGALGVYL 358
>gi|170077642|ref|YP_001734280.1| YjgP/YjgQ permease superfamily [Synechococcus sp. PCC 7002]
gi|169885311|gb|ACA99024.1| putative permease, YjgP/YjgQ family superfamily [Synechococcus sp.
PCC 7002]
Length = 378
Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats.
Identities = 50/376 (13%), Positives = 121/376 (32%), Gaps = 25/376 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + L+ L L I + + + + + A R+P
Sbjct: 8 FSLLDRYIMAQLVGPFLFGLGIFTSLGLTIGVLFEVMRNVVANEITWAIAFQILALRLPE 67
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P TL+ + + +L+ SE++ R++G+ +L+ P ++ +L+ T + +
Sbjct: 68 FLVLGLPMATLLGTLTAYSSLSSFSEIIALRSVGLPPLRLMLPGLLLGLLITGITFGLND 127
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM----QISNPQQDIFI-----GAKKILPE 172
I K + + + ++ + I A+ +
Sbjct: 128 WIVPQTTKQASTIANIAQGEATIDYQEKNIIYPEYQRVKTATGNREILKTLFYAETF--D 185
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNI 230
+ T + + A A ++ ++ YQ G +
Sbjct: 186 GTQMNNLTILDRAAVDT-QRIITAAAAQWNANEQGWLVQDGSIYQIGANGSFSDIEQFET 244
Query: 231 --------PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
P+ + + + + ++ + S + + +P
Sbjct: 245 NFLNLSDAPLILATRCQRPNEMTLQVIDVCLESLKLSRNERRIRT--LQVRKQEKFSVPF 302
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ + ++ +++ L S++ V + F Y I I S G G + P
Sbjct: 303 VCIVFAMVGSAIGLRPQNSSR-ATSVGLSVAIVFAYYLISVISSSMGVWGTITPFMGTWF 361
Query: 343 PVILTISLSILILLQK 358
P +L + + IL +
Sbjct: 362 PNLLGLVAAGTILWRT 377
>gi|24213174|ref|NP_710655.1| permease [Leptospira interrogans serovar Lai str. 56601]
gi|45656313|ref|YP_000399.1| hypothetical protein LIC10413 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|24193889|gb|AAN47673.1| permease [Leptospira interrogans serovar Lai str. 56601]
gi|45599547|gb|AAS69036.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 386
Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats.
Identities = 54/365 (14%), Positives = 125/365 (34%), Gaps = 17/365 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y F + K + ++ ++ + +N+ A+ +P II
Sbjct: 27 ILDKYLFGEFFKIFIGTVILLTGIMLLSLVNDNLRNFTA-TKAPRYHVALFLVYSIPKII 85
Query: 64 QQII-PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + + ELV A G+S ++++ P ++ IL+ I +L
Sbjct: 86 STTVVSMSLMFSICFTVGQFSVNKELVSMMAAGVSFFRIVTPLILFGILMWIIMLLATEL 145
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE-NHIWEDFTS 181
I K+ + G ++ + + + F P+ + I F
Sbjct: 146 IVRPVNKLA-KIEHDTLTEGMGTLANSVYQFHVKGKEG--FYYLYFYDPDKDEINGGFNY 202
Query: 182 ITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM----- 234
I + + A K+KKV E+ + + T
Sbjct: 203 IRLRPDGSPETVISSLKAKYNYETKLWKMKKVEEWHFDNDLKLSSQETYEEKEYELPEEP 262
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
F+ + + +++ ++ + + + T+ + + +P+M + +TLI
Sbjct: 263 SYFKVPAGSVEEMNLFQLKEEEKRRIQKGLAYGDVL-TEKHSVFALPMMTIIVTLIGTIA 321
Query: 295 SLEFSRSNQPR-IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ + + G+ + Y + KS G++G++ P A I L + L
Sbjct: 322 GYFTKKTAGVASLGITIGVVL--IYYIFNSAGKSLGENGVIPPFAGVWITPSLFLGLCFW 379
Query: 354 ILLQK 358
+ +
Sbjct: 380 MFRRM 384
>gi|262382043|ref|ZP_06075181.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262297220|gb|EEY85150.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 361
Score = 129 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 58/352 (16%), Positives = 124/352 (35%), Gaps = 12/352 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR-VPLIIQQI 66
Y K +L T ++ + + + V D+NE ++ P+ + V +P
Sbjct: 11 YIIKQFLGTYVFAIALIISISVVFDINEKIDKFLN-PDVPLKAIIVDYYLNFIPYFANLF 69
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P T + I L SE++ A G+S +L+ P+ V + ++ I T ++ I
Sbjct: 70 SPLFTFIAVIFFTSKLADRSEIIAMLASGMSFRRLMLPYAVSATIIAIVTFILNAYIIPP 129
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ ID ++ N + I +++ F+ +
Sbjct: 130 ANETRIDFQNKYIRNKKVDYVKNA----QLEIEPGIIAYFDSYDARSNMGYRFSLEHFED 185
Query: 187 KNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPI---DKNSTTLNIPIKMDGFQKFSE 242
K K+I R A + + + + + + + + I F
Sbjct: 186 K-KLISRLTAKSIKYDSLYQWTVIDYMIRDFDGMREHITEGSRKDTTLTIVPSDFLISVN 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + E+ ++ K I + + +++ + +T I AS+S +
Sbjct: 245 DCETMTTPELNTYINRQKKRGIGNIQTFQIEYHKRFATIMAAFILTSIGASLSSRKIKGG 304
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I + F +T+ +F +G + P AA IP I+ ++I +
Sbjct: 305 MGMNIGIG-LALSFSYILFMTVTSTFAINGYVSPAVAAWIPNIVYTFIAIFL 355
>gi|257468007|ref|ZP_05632103.1| hypothetical protein FulcA4_01647 [Fusobacterium ulcerans ATCC
49185]
gi|317062293|ref|ZP_07926778.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
gi|313687969|gb|EFS24804.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
Length = 358
Score = 129 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 50/364 (13%), Positives = 127/364 (34%), Gaps = 13/364 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y + +K + F + +F+ID+ + + SI + + +P I
Sbjct: 2 KIIEKYILEE-VKMPILFGISLFTFIFLIDIIVAMMENIIVKGISIIDIMRILSFYLPPI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q IP + ++ F RTSE +IG+ + ++ P + + +F +
Sbjct: 61 LSQTIPMGIFLGVMLTFSKFTRTSEATAMSSIGMDLRGIVKPIFILACATTLFIFFLQES 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + + + ++ + ++ + +I ++ + +
Sbjct: 121 IIPRSFSKLQYITTKIAYENPVFQLKEKTFI---DEVEEYNLYIDRIEGKDRVAQGVLIF 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GRIPIDKNSTTLNIPIK--MDGF 237
++ + A + + + Y + G+ + +P+ DG
Sbjct: 178 QKNEDVEFPTVLVGKEAYWKDSSMVITDSKFYDFDKDGKEKLRGEFDDKKVPLDAYFDGI 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S ++K+M ++ + + + +PL + ++L+ +S+
Sbjct: 238 DIKVKDIEAMSISMLLKEMKDLPQNEKIP---YKVEINRKLALPLSTIMLSLLGVFISIG 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + A + F T + I G + P P I+ ++ +
Sbjct: 295 HHRSGK-GANFALSLVVIFSYITFLNIGMVMANRGKIPPFVGVWTPNIILFLVTFYFYKK 353
Query: 358 KEDG 361
K G
Sbjct: 354 KSRG 357
>gi|255013990|ref|ZP_05286116.1| hypothetical protein B2_08777 [Bacteroides sp. 2_1_7]
Length = 361
Score = 129 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 57/352 (16%), Positives = 124/352 (35%), Gaps = 12/352 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR-VPLIIQQI 66
Y K +L T ++ + + + V D+NE ++ P+ + V +P
Sbjct: 11 YIIKQFLGTYVFAIALIISISVVFDINEKIDKFLN-PDVPLKAIIVDYYLNFIPYFANLF 69
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P T + I L SE++ A G+S +L+ P+ V + ++ I T ++ I
Sbjct: 70 SPLFTFIAVIFFTSKLADRSEIIAMLASGMSFRRLMLPYAVSATIIAIVTFILNAYIIPP 129
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ ID ++ N + + +++ F+ +
Sbjct: 130 ANETRIDFQNKYIRNKKVDYVKNA----QLEIEPGVIAYFDSYDARSNMGYRFSLEHFED 185
Query: 187 KNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPI---DKNSTTLNIPIKMDGFQKFSE 242
K K+I R A + + + + + + + + I F
Sbjct: 186 K-KLISRLTAKSIKYDSLYQWTVIDYMIRDFDGMREHITEGSRKDTTLTIVPSDFLISVN 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + E+ ++ K I + + +++ + +T I AS+S +
Sbjct: 245 DCETMTTPELNTYINRQKKRGIGNIQTFQIEYHKRFATIMAAFILTSIGASLSSRKIKGG 304
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I + F +T+ +F +G + P AA IP I+ ++I +
Sbjct: 305 MGMNIGIG-LALSFSYILFMTVTSTFAINGYVSPAVAAWIPNIVYTFIAIFL 355
>gi|305664654|ref|YP_003860941.1| hypothetical protein FB2170_00060 [Maribacter sp. HTCC2170]
gi|88707355|gb|EAQ99601.1| hypothetical protein FB2170_00060 [Maribacter sp. HTCC2170]
Length = 341
Score = 129 bits (326), Expect = 5e-28, Method: Composition-based stats.
Identities = 56/341 (16%), Positives = 127/341 (37%), Gaps = 10/341 (2%)
Query: 20 FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVF 79
LL + + + +L E +M + + + I + P + I
Sbjct: 1 MLLLFIPIGIMANLAEQIGKMIDNDAPTNEIIIYYVNFTI-YIGSLLFPIFLFLSIIFFT 59
Query: 80 FNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWK 139
L +E+V + G+S + L P+++G+ ++ + +++ I + + ++
Sbjct: 60 SKLASNTEIVAILSSGVSYNRFLRPYLIGASIVALIMLVMAMFIVPNASIGYNEFKFKYL 119
Query: 140 DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLA 199
G + + + Q++ FI K P FT ++ N + + A+
Sbjct: 120 KKGKQDRVTSNIFNQLNESD---FIYVKSFDPARQNANQFTFERFNEDNTLDFKISANSI 176
Query: 200 II--YNDKVKLKKVVEYQ-YGRIPIDKNSTTLNI--PIKMDGFQKFSEQFASRSFYEIIK 254
+ +L K + + G I + L+ K+D S +++ +E+ +
Sbjct: 177 RWIEKDSTYRLTKYKKRKMVGDSAIIETKNRLDTLFTFKIDDLTPVSYIAETKNLFELNR 236
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
+ + + Y +PL +T+IA +VS R I +A+GI
Sbjct: 237 FIENQRRKGASNINNYVLVKYRRWALPLTAFILTIIAVAVS-SVKRRGGMGINLAFGIGV 295
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
F+ + + + P+ A +IP ++ L+ +L
Sbjct: 296 AFIYIFFDKVFGTLAEQAGFSPLLAVIIPNVVFGVLAFYLL 336
>gi|150021419|ref|YP_001306773.1| permease YjgP/YjgQ family protein [Thermosipho melanesiensis BI429]
gi|149793940|gb|ABR31388.1| permease YjgP/YjgQ family protein [Thermosipho melanesiensis BI429]
Length = 1096
Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats.
Identities = 57/359 (15%), Positives = 127/359 (35%), Gaps = 17/359 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP---NYSISRGAVLAATRVPLII 63
R KY LK ++ + + + E+ Q+ ++ I + L +P +
Sbjct: 2 RVLTKYILKLSIGPFIMGVAAFVLFASVELLYQLSDIIVRHRVGILKLFELIYYNLPYFV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IP L V L + E+ GI +L+ PF + S+L G+F + + +
Sbjct: 62 SMGIPVGVLFSIFWVLSQLYSSKEITAMLVHGIPSRKLVYPFFLLSVLFGLFAFYLNDQM 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + I ++ + +I Q K+ + I D
Sbjct: 122 VPTFNHKAMKTISKYVYKRPEISIRENVLTKIDESQYFFV---KRYDQSSGILYDVVLFQ 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDGFQ 238
+ + A+ K L Y + ++ + +L++ ++
Sbjct: 179 HIQGEE--RIITAEKVQKDEGKWFLINGKMYVTDKDGFLKFDVNFSKISLDLKDDLESLM 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + E+ K+ K + + + + + +T++ +SL F
Sbjct: 237 RVGKSPRDMTGDELKNKIKTFRKLGVDPSPWI-VELHGRYANSVGPFIITILGVPLSLLF 295
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITI-MKSFGKSGILLPVAAALIPVILTISLSILILL 356
++ ++ F+ +LY + + GK +L PV AA P ++ IS+ + + L
Sbjct: 296 GLKSKSWSVIFT--FAIVILYQGSGAWISAMGKENLLNPVLAAWFPNLVFISVGLFLFL 352
>gi|150007422|ref|YP_001302165.1| hypothetical protein BDI_0773 [Parabacteroides distasonis ATCC
8503]
gi|256839671|ref|ZP_05545180.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|298375396|ref|ZP_06985353.1| membrane protein [Bacteroides sp. 3_1_19]
gi|149935846|gb|ABR42543.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
gi|256738601|gb|EEU51926.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|298267896|gb|EFI09552.1| membrane protein [Bacteroides sp. 3_1_19]
Length = 361
Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats.
Identities = 57/352 (16%), Positives = 123/352 (34%), Gaps = 12/352 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR-VPLIIQQI 66
Y K +L T ++ + + + V D+NE ++ P+ + V +P
Sbjct: 11 YIIKQFLGTYVFAIALIISISVVFDINEKIDKFLN-PDVPLKAIIVDYYLNFIPYFANLF 69
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P T + I L SE++ A G+S +L+ P+ V + ++ I T ++ I
Sbjct: 70 SPLFTFIAVIFFTSKLADRSEIIAMLASGMSFRRLMLPYAVSATIIAIVTFILNAYIIPP 129
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ ID ++ N + + +++ F+ +
Sbjct: 130 ANETRIDFQNKYIRNKKVDYVKNA----QLEIEPGVIAYFDSYDARSNMGYRFSLEHFED 185
Query: 187 KNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPI---DKNSTTLNIPIKMDGFQKFSE 242
K K+I R A + + + + + + + I F
Sbjct: 186 K-KLISRLTAKSIKYDSLYQWTVIDYMIRDFDGMREHISQGSRKDTTLTIVPSDFLISVN 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + E+ ++ K I + + +++ + +T I AS+S +
Sbjct: 245 DCETMTTPELNTYINRQKKRGIGNIQTFQIEYHKRFATIMAAFILTSIGASLSSRKIKGG 304
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I + F +T+ +F +G + P AA IP I+ ++I +
Sbjct: 305 MGMNIGIG-LALSFSYILFMTVTSTFAINGYVSPAVAAWIPNIVYTFIAIFL 355
>gi|42523904|ref|NP_969284.1| YjgP/YjgQ permease [Bdellovibrio bacteriovorus HD100]
gi|39576111|emb|CAE80277.1| predicted permease YjgP/YjgQ family [Bdellovibrio bacteriovorus
HD100]
Length = 367
Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats.
Identities = 49/359 (13%), Positives = 133/359 (37%), Gaps = 15/359 (4%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F L + + LL + ++ + + + + ++ A + + ++ +
Sbjct: 12 YIFFEMLPSFILGLLVFVSIILMFQVLRLTE-FALVHGVAMKTIAEIIGYVIISMLPILF 70
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P L ++ + L++ SE+V +A G+ + LL P ++ + L+G+ + + IA G
Sbjct: 71 PMALLFSVLLTYGRLSQDSEIVAMKASGLPMGTLLLPALILATLVGVISAQMSFNIAPWG 130
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ L + + + + II + D+ I A ++ + + + +K
Sbjct: 131 NRQFEVL---YSRLANTKAAAIIKEGTFAEGFFDMVIYANEVNTDKGLLKKVFIYD-EKN 186
Query: 188 NKIIHRKDADLAIIYNDK--------VKLKKVVEYQYGRIPIDKNSTTLNIP-IKMDGFQ 238
+ A I D ++L + ++ + + T ++ + +
Sbjct: 187 GDVPLTIIAKAGEIVPDPTRPGHEILLQLNQGEIHRQAKTHTKISFDTYDVRFSEPQNIE 246
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ ++ S + E+ ++ K +++++ I ++ + +I +
Sbjct: 247 EKAKSPPSLTLEEVRNRLKEDIKDKEVRRT-LQSEYHKRWAISVLCIVFAMIGVGLGTTT 305
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+R + I + + + +SG L A P +L +L + L +
Sbjct: 306 NRRAAKAGGMILCIGIIIFYWILYVAAEGAARSGALPAALAIWTPNVLFAALGVETLRR 364
>gi|301310576|ref|ZP_07216515.1| putative membrane protein [Bacteroides sp. 20_3]
gi|300832150|gb|EFK62781.1| putative membrane protein [Bacteroides sp. 20_3]
Length = 361
Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats.
Identities = 58/352 (16%), Positives = 123/352 (34%), Gaps = 12/352 (3%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR-VPLIIQQI 66
Y K +L T ++ + + + V D+NE ++ P+ + V +P
Sbjct: 11 YIIKQFLGTYVFAIALIISISVVFDINEKIDKFLN-PDVPLKAIIVDYYLNFIPYFANLF 69
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P T + I L SE++ A G+S +L+ P+ V + ++ I T ++ I
Sbjct: 70 SPLFTFIAVIFFTSKLADRSEIIAMLASGMSFRRLMLPYAVSATIIAIVTFILNAYIIPP 129
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ ID ++ N + I +++ F+ +
Sbjct: 130 ANETRIDFQNKYIRNKKVDYVKNA----QLEIEPGIIAYFDSYDARSNMGYRFSLEHFED 185
Query: 187 KNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPI---DKNSTTLNIPIKMDGFQKFSE 242
K K+I R A + + + + + + + I F
Sbjct: 186 K-KLISRLTAKSIKYDSLYQWTVIDYMIRDFDGMREHIFQGSRKDTTLTIVPSDFLISVN 244
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + E+ ++ K I + + +++ + +T I AS+S +
Sbjct: 245 DCETMTTPELNTYINRQKKRGIGNIQTFQIEYHKRFATIMAAFILTSIGASLSSRKIKGG 304
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I + F +T+ +F +G + P AA IP I+ ++I +
Sbjct: 305 MGMNIGIG-LALSFSYILFMTVTSTFAINGYVSPAVAAWIPNIVYTFIAIFL 355
>gi|158521442|ref|YP_001529312.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
gi|158510268|gb|ABW67235.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
Length = 391
Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 53/369 (14%), Positives = 128/369 (34%), Gaps = 24/369 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY + L ++ L +I N + + ++ P +
Sbjct: 6 IDRYIMAELVPVFGVSLAVFTLVFLTHQLLDITNFIVNYGT-GLGVVMLMLVYSTPYFLV 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+IP T++ ++ F ++ +E+V ++ G+S+++L P + + + T+L+
Sbjct: 65 YVIPISTMMAVLLTFLRMSGDNEIVALKSSGVSLYRLFYPVMGFCVAACLLTLLMTLWGL 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD-IFIGAKKILPENHIWEDFTSIT 183
G+ L ++ + N + I + + + + D
Sbjct: 125 PRGKVAFKQLAYT----VVTSNPNLGIVDREFNTLFNGITLYVGQFDKKQRVLSDVFIED 180
Query: 184 IDKKNKIIHRKDADLAIIYND------KVKLKKVVEYQY---GRIPIDKNSTTLNIPIKM 234
K + A + D ++ L YQ R T +I + +
Sbjct: 181 QRSAGKPVT-ICAPSGTLDVDMVGQVVRLSLADGRMYQVDLRDRSSRVIRFETYDIHLDL 239
Query: 235 DGFQKFSEQFAS----RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ + + A S E+ + + + A + + IP V + L+
Sbjct: 240 ERAGQVASTAARSEKEMSLAELFDHIQKAG-AAGLPRGSARMELHKKFSIPFACVVLGLL 298
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A + ++ +R + + + + Y +++ + G+SG L P A +P ++
Sbjct: 299 AVPLGVQ-ARGRKTSSGIGLALVFFLLYYLVLSGGEILGESGFLHPALAMWLPDMV--MG 355
Query: 351 SILILLQKE 359
+ + L E
Sbjct: 356 GLGLFLYAE 364
>gi|282878370|ref|ZP_06287162.1| putative membrane protein [Prevotella buccalis ATCC 35310]
gi|281299556|gb|EFA91933.1| putative membrane protein [Prevotella buccalis ATCC 35310]
Length = 410
Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/356 (16%), Positives = 125/356 (35%), Gaps = 18/356 (5%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + ++ T +Y + + + V D NE ++ E + + A VP
Sbjct: 56 YIIRKFIGTYIYSIALIIAIAIVFDFNENLSKFTEYHAPARAIIFDYYANFVPYYSNLFS 115
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + I L SE++ A GIS +L+ P+++ +L+ + + + G
Sbjct: 116 PLFVFIAVIFFTSKLAGNSEIIAMLASGISFKRLMRPYMLSCVLIASLSYYLSASVIPHG 175
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
I + ++++ + +D + + + + + F+ + K
Sbjct: 176 TVIRHNFESLYRNSRKQTAADNV----QLQVGKGVIAYIQHYDNKTKRGYGFSLDKFENK 231
Query: 188 NKIIH--RKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNS-TTLNI-----PIKMDGF 237
+ H + I + K + Q + S L+ P +
Sbjct: 232 KLVSHMTAMEIQYDTIADSKYHWNVTGWKIRQLKGLREHITSGADLDTLIQMEPTDLVYS 291
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ E F S + I K SN+ + + +++ I +T+I S+S
Sbjct: 292 KGQQETFTSAELKDYISKQVDRGSSNV---VQYQVEYHKRIASSFASFILTIIGFSLSAR 348
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + G+ + + T+ +F + P+ AA IP I+ ++
Sbjct: 349 K-RKGGMGLYLGLGLALSSLYILLQTVSATFAINANAPPILAAWIPNIIFALVAYF 403
>gi|300770003|ref|ZP_07079882.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33861]
gi|300762479|gb|EFK59296.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33861]
Length = 359
Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/360 (16%), Positives = 128/360 (35%), Gaps = 10/360 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ Y K YL T ++ + +++ + D++E + + A +P
Sbjct: 2 KIIDWYIIKKYLSTFVFTMAIFTVVMVIFDVSEKLDNFLQYKAPISKIVFQYYAGFIPFY 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + P I + I + +E+V + G+S ++L P+++ + L+ T +
Sbjct: 62 LNFLSPLINFIAVIFFTSKMADQTEIVPILSGGMSFNRMLRPYMIAASLIFAVTFVFNIY 121
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I K+ + + S MQI + ++ I +F
Sbjct: 122 IIPRTNKMKVSFENVYVKPDKAGGSISATHMQI---DSNTYVYIDNFDTRQKIGYNFVLE 178
Query: 183 TIDKKNKIIHRKDADLAIIY--NDKVKL---KKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
D ++ + AD K K+ V + + +K F
Sbjct: 179 KFDAD-RLKEKMIADRIRWDSVATKWKIENYTNRVINGLNERMEKADQKDTTLDMKPSDF 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+K+ F + + E+ K++ + Y + P +TL+ S+S +
Sbjct: 238 EKYDNMFTAMNTDELSKRIDKEETRGTGMMTELLLEKYKRYIYPFSAFILTLMGVSLSSK 297
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + I F+ +I F G L P+ A +IP ++ +SL + ++ +
Sbjct: 298 KVRGGIGLSLGLG-IALSFVYIVLIQFSTMFSLKGGLPPLIAVMIPNLIFLSLGLYLMYK 356
>gi|289806566|ref|ZP_06537195.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 219
Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 8/220 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELAGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRI 219
+ + ++ + A A + +L +V E
Sbjct: 178 YAFNDQRRLQSVRYAASAKFDPEHKVWRLSQVDESDLQNP 217
>gi|332296606|ref|YP_004438529.1| permease YjgP/YjgQ family protein [Thermodesulfobium narugense DSM
14796]
gi|332179709|gb|AEE15398.1| permease YjgP/YjgQ family protein [Thermodesulfobium narugense DSM
14796]
Length = 365
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/315 (18%), Positives = 113/315 (35%), Gaps = 12/315 (3%)
Query: 47 SISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFV 106
S GA LAA +P I P TL+ ++ ++ ELV R+ G+SI++ PF+
Sbjct: 50 SFLTGAKLAACGLPYSIAFAFPMATLLGVLMAVSRISSNWELVALRSAGLSIFKFSLPFI 109
Query: 107 VGSILLGIFTVLVINPIA-TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
+ I+ + +A +K + + K + ++ +++ + +PQ I
Sbjct: 110 IIGIIFSTVSFFTFEKLAYPLLDKSRYIIAKDLKKELNTERQNVLFKLPPDSPQPKFIIF 169
Query: 166 AKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI---- 221
AK P +D D + + + ++ K + Y++ + I
Sbjct: 170 AKDYKPATMSLQDVYIQEFDNEF-LKRTIYSSELSFTGNRWVASKGLSYEFSKDGIIVGR 228
Query: 222 -DKNSTTLNIPIKMDGFQKFSE-QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
D + + + + + SF+E++ +S S + Y +
Sbjct: 229 LDFEKLIVPLGVLPQTVKALPTKKPRDMSFFELLSYLSNSKD---IVDKSLYVDLYNKLS 285
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
+P A I + + R I I + Y I ++ + G L P A
Sbjct: 286 LPFACFAFACIGVAFGIASERK-SSAIGFGIAITTVLFYYLIFSLFTTLGYMSYLPPFIA 344
Query: 340 ALIPVILTISLSILI 354
+ IL I +
Sbjct: 345 SFGADILITIFGIFM 359
>gi|94266927|ref|ZP_01290580.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
gi|93452379|gb|EAT02998.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
Length = 400
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/350 (17%), Positives = 129/350 (36%), Gaps = 12/350 (3%)
Query: 12 YYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFIT 71
L LL ++F+ L + +++ L + + A P ++ +P
Sbjct: 15 EMLAPFFAALLVINAVLFLGRLVPMLDEIFSL-GVGLGDFLRVVAYITPSMLLFSLPMAA 73
Query: 72 LVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIG 131
++ I+ F L E++ +A GIS+ ++L P V +L G+ T+ + G
Sbjct: 74 MMAVIIAFTRLAGDLEIMALKASGISLPRMLPPVVFFGLLTGLMTLATATVLIPRGMTAM 133
Query: 132 IDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII 191
L+ + + I S D+ + I P+ W + K+ +
Sbjct: 134 DQLMIHL---AKEHIEEGIREKTFSEGLGDVVLYVDDISPDQRFWHGVYLSDLRDKDNPL 190
Query: 192 HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS----R 247
A + D + V+ G + + + I K + + R
Sbjct: 191 T-ISAQGGNLRADPAAGRVVLSLSDGSLHRSAGAKSQTIFFKHYKLEIPLDSPTLGPPGR 249
Query: 248 SFYEIIKKMSFSNKSNIFHN--YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
S + + + H YR +++ + +P+ + ++ S+S + + ++
Sbjct: 250 SSMTQAQLRQRATELGPEHPRQYRYIGEYHQRLALPVGCFLLAMLGLSLS-QMGQGSRLA 308
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ V G+ S Y ++T KS G++G L A +P +L + +L
Sbjct: 309 LGVPLGLASFVAYYVLLTAAKSLGEAGTLPMALAIWLPNLLFLLAGGYLL 358
>gi|153820564|ref|ZP_01973231.1| conserved permease [Vibrio cholerae NCTC 8457]
gi|126508893|gb|EAZ71487.1| conserved permease [Vibrio cholerae NCTC 8457]
Length = 236
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 88/239 (36%), Gaps = 8/239 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A +K+ D+ G W + +N FI K+ EN
Sbjct: 120 EWGAPQAQKMARDMRAFATSGGAIMSVRTGVWARDAND----FIFIAKV--ENEHLYGLN 173
Query: 181 SITIDKKNKIIHRKDADL-AIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
D+ K+ ++ + N++ +K V + + L+ + Q
Sbjct: 174 LWRFDENKKLSTVIFSEQVDYVANNEWLMKDAVLTRLVMTSRSVKNRCLSTAGEPPLLQ 232
>gi|313672807|ref|YP_004050918.1| permease yjgp/yjgq family protein [Calditerrivibrio nitroreducens
DSM 19672]
gi|312939563|gb|ADR18755.1| permease YjgP/YjgQ family protein [Calditerrivibrio nitroreducens
DSM 19672]
Length = 364
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 62/357 (17%), Positives = 121/357 (33%), Gaps = 21/357 (5%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
YF K ++ + I+ + + + R P+ + Q +
Sbjct: 7 YFLKILIRNFIVVEAFVYIIYMFFMFFTQSKYIARY-GATFKDIFIYDVMRSPVFVSQTL 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P +V +V F L RT+E+ +IG S+ +L + S + + + +
Sbjct: 66 PVSFIVAVVVTFIILIRTTEITAYVSIGGSLLSILKVLIFLSFSVSLVMFFLTEFVVPKS 125
Query: 128 EKIGIDLIQQW--KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ D ++ K + + W++ N FI I N D I +D
Sbjct: 126 QVKSNDYKTKYIEKREEVRVTTLNNFWIKDKN----SFIQVGTIDIINKKLFDIKFIDLD 181
Query: 186 KKNKIIHRKDADLA-IIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ KI+ + A I K + + E +P ++ F +
Sbjct: 182 ENGKIVKVRYISQADYIEGKKWSVLEYKEVDTTDVPKIVKEE-----KNLEQENDFFTKL 236
Query: 245 ASRSFYEIIKKMSFSN--------KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S K+++FS KS R +Y I L +V + ++ +
Sbjct: 237 VDVSLVSQPKELTFSEIKKIVKFYKSKGLSYSRHMCYYYNKIANILNVVLLVIVVLPFLI 296
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ SR GI F+ + + S GKSG++ P + + + I++
Sbjct: 297 DLSRGFSYVRAAGNGIVIIFLYFIAQSTFFSMGKSGVMPPFWSNFLGYFIFIAVGFF 353
>gi|83596032|gb|ABC25390.1| predicted permease YjgP/YjgQ family superfamily [uncultured marine
bacterium Ant39E11]
Length = 359
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 52/364 (14%), Positives = 129/364 (35%), Gaps = 22/364 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY +L F+ M++ V D+++ + + + +
Sbjct: 4 VDRYILSKFLGNFALFMGLIMLIAMVFDVSQKLDDFMDNDLNLATILLDYYLNFIAFYGN 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I + + + E+ G+S +L+ P+++G+ ++ + + + + I
Sbjct: 64 TFSALILFLSTVFFTARMANQGEISAMLTGGLSFGRLMRPYLIGAAVICLASASLSHFII 123
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
I + + + S I + P FI + P+ +FT
Sbjct: 124 PGTNSSRIAFEEAYIQ--HRVTSRPIHLHRQVLPGH--FIYVETWSPDRMGGYNFTYEHF 179
Query: 185 DKKNKIIHRKDA-------DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN----IPIK 233
++ +++ R A + D L++ G + + + +P +
Sbjct: 180 -EQGRMVDRLKASFIKYDSAKTSWHMDNWTLRQW--QSNGHMSLTSGVRLDSSFAFLPQQ 236
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ E S Y+ +K++ S + E ++Y PL + LIAA+
Sbjct: 237 FSSNNRGIETMTSPELYKALKQVRLSGSEAVLF---YEMEWYRRSAYPLSAFILVLIAAA 293
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ R +A G+ + ++ + + + + P+ A +P IL + +++L
Sbjct: 294 MASRSQR-GGIGAQIALGLLVAVLYIFLMQLSSTLASTHVTSPLVAVWVPNILFLGVAML 352
Query: 354 ILLQ 357
+
Sbjct: 353 AYRR 356
>gi|94263395|ref|ZP_01287209.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
gi|93456231|gb|EAT06365.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
Length = 400
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/350 (17%), Positives = 129/350 (36%), Gaps = 12/350 (3%)
Query: 12 YYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFIT 71
L LL ++F+ L + +++ L + + A P ++ +P
Sbjct: 15 EMLAPFFAALLVINAVLFLGRLVPMLDEIFSL-GVGLGDFLRVVAYITPSMLLFSLPMAA 73
Query: 72 LVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIG 131
++ I+ F L E++ +A GIS+ ++L P V +L G+ T+ + G
Sbjct: 74 MMAVIIAFTRLAGDLEIMALKASGISLPRMLPPVVFFGLLTGLMTLATATVLIPRGMTAM 133
Query: 132 IDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII 191
L+ + + I S D+ + I P+ W + K+ +
Sbjct: 134 DQLMIHL---AKEHIEEGIREKTFSEGLGDVVLYVDDISPDQRFWHGVYLSDLRDKDNPL 190
Query: 192 HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS----R 247
A + D + V+ G + + + I K + + R
Sbjct: 191 T-ISAQGGNLRADPAAGRVVLSLSDGSLHRSAGAKSQTIFFKHYNLEIPLDSPTLGPPGR 249
Query: 248 SFYEIIKKMSFSNKSNIFHN--YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
S + + + H YR +++ + +P+ + ++ S+S + + ++
Sbjct: 250 SSMTQAQLRQRATELGPEHPRQYRYIGEYHQRLALPVGCFLLAMLGLSLS-QMGQGSRLA 308
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ V G+ S Y ++T KS G++G L A +P +L + +L
Sbjct: 309 LGVPLGLASFVAYYVLLTAAKSLGEAGTLPMALAIWLPNLLFLLAGGYLL 358
>gi|325285312|ref|YP_004261102.1| permease YjgP/YjgQ family protein [Cellulophaga lytica DSM 7489]
gi|324320766|gb|ADY28231.1| permease YjgP/YjgQ family protein [Cellulophaga lytica DSM 7489]
Length = 341
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 58/341 (17%), Positives = 121/341 (35%), Gaps = 10/341 (2%)
Query: 20 FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVF 79
LL + + ++DL E +M + I + P + I
Sbjct: 1 MLLLFVPIGVMLDLAEKIAKMVRN-EAPTLEILEYYMNFIIYIGSLLFPIFLFLSIIFFT 59
Query: 80 FNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWK 139
L +E+V + G+S + L P+ +G+ ++ I ++ I + I ++
Sbjct: 60 SKLASNTEIVAILSSGVSFGRFLRPYFMGATIIAILMFVMAMFIVPKASLDYHEFIFKYL 119
Query: 140 DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLA 199
G K+ + N + F+ P + +F D +K+ ++ A
Sbjct: 120 KKG-KKFQETTNIYNQLNENE--FLYISSFDPNRQLGSNFVLEHFDNDDKLAYKLTASSI 176
Query: 200 II--YNDKVKLKKVVEYQY-GRIPIDKNSTTLNI--PIKMDGFQKFSEQFASRSFYEIIK 254
+ +L G + + + + L+ K+D S +++ +E+ K
Sbjct: 177 RWIPKDTIYRLTGFTSRTVKGNVEVIEKKSRLDTIFDFKIDDLTPVSYVAETKNIFELNK 236
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
+ K + Y +P+ +TLIA SVS R + +A+GI
Sbjct: 237 FIEDQRKKGASNINTYVMAKYKRWALPVSAFILTLIAVSVS-SIKRRGGMGLNLAFGIVI 295
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
F+ + + L P+ A +IP + + + +L
Sbjct: 296 AFVYIFFDRVFAILAEKAGLSPLIAIIIPNAIFAIIGLYLL 336
>gi|148244955|ref|YP_001219649.1| permease [Candidatus Vesicomyosocius okutanii HA]
gi|146326782|dbj|BAF61925.1| permease [Candidatus Vesicomyosocius okutanii HA]
Length = 360
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/349 (18%), Positives = 131/349 (37%), Gaps = 14/349 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K TL +L + + + + +G+ NY++ +P +
Sbjct: 2 KILTLYIVKTMAFYTLIVMLVWIGVYSFFNFLDEVKFIGQY-NYTVFEATKYIILNIPAV 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I L+ +++ NL TS+LVI R+ G+SI Q+ N V +++ +L+
Sbjct: 61 MYSHSSVIILLGSLLALTNLASTSQLVIIRSSGVSIMQISNIVVWVALMFIAIIILIGEL 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + L + + ++ W++ + +FI KK + ++D T I
Sbjct: 121 VAPITTEYAECLRSKALEQNMTCRNQQEFWLKDNG----LFIHVKK-DFDAKSFQDITFI 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-------NSTTLNIPIKMD 235
+ + +D A + ++L K + YQ + ++ I
Sbjct: 176 KLRAPGVLDSIIYSDNATFNGNNLELNKPIHYQLSKNGELTTFSKNYFEKYSVQISFNQK 235
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + S + + K+MSF +N+ + E + Y ++P+ LVAM L +
Sbjct: 236 LIKNLKKDPRKLSTWHLYKQMSFLTNNNLVADI-VEIEIYKRFMMPVTLVAMILFSMLFV 294
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
R + G+ I+ + +A IP
Sbjct: 295 FGSLRDASLGKKIFLGLMMSLFFELASRIIGVLSLTFNYNHFLSASIPT 343
>gi|51246435|ref|YP_066319.1| hypothetical protein DP2583 [Desulfotalea psychrophila LSv54]
gi|50877472|emb|CAG37312.1| hypothetical protein DP2583 [Desulfotalea psychrophila LSv54]
Length = 351
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 54/320 (16%), Positives = 124/320 (38%), Gaps = 14/320 (4%)
Query: 47 SISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFV 106
+ + + T P I +P +++ + F L+ EL+ +A GISI+++L P
Sbjct: 3 DLQILSAYSPTSFPNIFLYTLPMASMLGITICFSRLSTDMELLALKAGGISIYKILPPVF 62
Query: 107 VGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGA 166
+ + + + + + E L Q Q I + ++ DI I
Sbjct: 63 LVASAITLIAFYFSTQLIPASELAMKKLSYQILKEKIDQG---IQAHKFTDAMGDIVIYV 119
Query: 167 KKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK------VKLKKVVEYQY---G 217
K+ E W + + + A + ++ +KL ++ G
Sbjct: 120 DKVDKETGDWHNVWVSDMRGVKQPT-ITMARSGSMKSNSKQMSITIKLTDGSLHRPEEQG 178
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL 277
I T+N+P++ G F S E++++ + +F+
Sbjct: 179 TEIITFKDYTINMPLETGGKNIFMLHKRLLSMPELLEQAKRWGNESKKRGRIYLIEFHKR 238
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
+++P+ + ++ +A + L+ +R + I + G+ + Y + T+ K ++G + +
Sbjct: 239 LILPIGCLMLSFLALPLGLQ-ARPGKKAIGIPVGLGIFIVYYILHTVGKELAEAGTVPLI 297
Query: 338 AAALIPVILTISLSILILLQ 357
A +P +L L+I + +
Sbjct: 298 PALWLPNVLFFLLAIFWIYR 317
>gi|227538454|ref|ZP_03968503.1| permease YjgP/YjgQ family protein [Sphingobacterium spiritivorum
ATCC 33300]
gi|227241736|gb|EEI91751.1| permease YjgP/YjgQ family protein [Sphingobacterium spiritivorum
ATCC 33300]
Length = 359
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 59/360 (16%), Positives = 129/360 (35%), Gaps = 10/360 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ Y K YL T ++ + +++ + D++E + + A +P
Sbjct: 2 KIIDWYIIKKYLSTFVFTMAIFTVVMVIFDVSEKLDNFLQYKAPISKIVFQYYAGFIPFY 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + P I + I + +E+V + G+S ++L P+++ + L+ T +
Sbjct: 62 LNFLSPLINFIAVIFFTSKMADQTEIVPILSGGMSFNRMLRPYMIAASLIFAVTFVFNIY 121
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I K+ + + S MQI + ++ I +F
Sbjct: 122 IIPRTNKMKVSFENVYVKPDKAGGSISATHMQI---DSNTYVYIDNFDTRQKIGYNFVLE 178
Query: 183 TIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGF 237
D ++ + AD K K++ + + + +K F
Sbjct: 179 KFDGD-RLKEKMIADRIRWDSVATKWKIENYTNRVINGLHERMDKADQKDTTLDMKPSDF 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+K+ F + + E+ K++ + Y + P +TL+ S+S +
Sbjct: 238 EKYDNMFTAMNTDELSKRIDKEETRGTGMMTELLLEKYKRYIYPFSAFILTLMGVSLSSK 297
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + I F+ +I F G L P+ A +IP ++ +SL + ++ +
Sbjct: 298 KVRGGIGLSLGLG-IALSFVYIVLIQFSTMFSLKGGLPPLIAVMIPNLIFLSLGLYLMYK 356
>gi|300774823|ref|ZP_07084686.1| YjgP/YjgQ family permease [Chryseobacterium gleum ATCC 35910]
gi|300506638|gb|EFK37773.1| YjgP/YjgQ family permease [Chryseobacterium gleum ATCC 35910]
Length = 370
Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats.
Identities = 60/373 (16%), Positives = 137/373 (36%), Gaps = 21/373 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV- 59
M I+ RY K YL T + L+ I+V VID+ + ++ +
Sbjct: 1 MLKIVDRYIIKKYLGTFSFMLVLLSIVVLVIDVQQKIPRIENAKAIDPKLDLMYFLIHFY 60
Query: 60 PL----IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
P ++ + + + I + +E+V + G S + P++V SI +G+
Sbjct: 61 PFWIINLVVTFLSILVFISVIYFTSRMANNTEIVAIISSGASFHRFSKPYLVTSIFIGLI 120
Query: 116 TVLVINPIATSGEKIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
++V + + +L + ++ P + + IFI +
Sbjct: 121 ALVVYHMVLPWANIKKNELEAYTYNAANKEKILGTAPASSQLSKTEYIFIDSW--NKREK 178
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNSTTLNI-- 230
F DK K+ + A + L +E + +K + + +
Sbjct: 179 RGSSFVYQKYDKDRKMTYELKASEVYWDKAKKQFVLNNYLEKTINKDNSEKLNNGIELRK 238
Query: 231 -----PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
P ++ + + + + I++ SN+ + + +P+ ++
Sbjct: 239 NYGHSPEELFPNELLGQNKTTPELLKFIEREKARGNSNLNS---YLNELHQRTSMPVSII 295
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+T +A S+S + R I +A GI F+ +K ++ L P A +P +
Sbjct: 296 ILTFLALSLSSQKKR-GGLGINLAIGISLAFIFVFSFEALKVVSENKSLSPALAMWLPNL 354
Query: 346 LTISLSILILLQK 358
+ + L++ + +++
Sbjct: 355 VFLPLTLYLYIKR 367
>gi|82701537|ref|YP_411103.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
gi|82409602|gb|ABB73711.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
Length = 354
Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 67/360 (18%), Positives = 130/360 (36%), Gaps = 16/360 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY L + L +DL + + +G+ YS+ + A +P
Sbjct: 3 IIYRYLGLQVLMGLGIATAVLLPLFGFLDLLDQLDDVGK-GTYSVKDAFLYTALLLPRRF 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+ PFI L+ N+ L SEL R G+S + VV I+L +F ++ +
Sbjct: 62 IQLAPFIALMGNVTALGRLAVGSELTALRGAGVSPLGISLAPVVVGIILLLFITVLDQFV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI--FIGAKKILPENHIWEDFTS 181
A ++ I + + W + I + A++ +
Sbjct: 122 APQFQQKAISSRAAALEKSAALGQQLGIWTRDERNILRIGEMLHARRA-------ANIEI 174
Query: 182 ITIDKKNKIIHRKDADLA-IIYNDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGF 237
+ D ++ A A II +L+ VV + + + S +K +
Sbjct: 175 MHFDDNGFLLRYTYAKYADIINEGLWELRDVVIKTFNGNAMEIVSRESVPWEPFLKEEDI 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ S S E+ + F ++ + E + L +AM L++
Sbjct: 235 STLTKSPESLSPAELFLHVHFL-RATGQESGAYELALWRKAGGALTTIAMLLLSIPFVFG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ +V + G +Y I + G L P +AL+P + I+++ L +
Sbjct: 294 SVRAGLGNRLVVASM-LGISVYLFDQITANAGLLLHLNPALSALLPGGVLIAVAYFWLRR 352
>gi|317153284|ref|YP_004121332.1| permease YjgP/YjgQ family protein [Desulfovibrio aespoeensis
Aspo-2]
gi|316943535|gb|ADU62586.1| permease YjgP/YjgQ family protein [Desulfovibrio aespoeensis
Aspo-2]
Length = 380
Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 52/359 (14%), Positives = 124/359 (34%), Gaps = 14/359 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY + L L + + D+ + + + ++PL
Sbjct: 7 IGVLGRYLIQQNLYLMSICLTVGTCIYLLSDVFDRLDDFIK-AGLGAETILFYFFVKIPL 65
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ Q++P I L+ ++ L R+ E++ RA G+S + F++ ++ + +
Sbjct: 66 IVSQLMPAIFLLALVLQLGILTRSKEMLALRAGGVSFAWFIKFFLIYAMFWSLGQLAFSQ 125
Query: 122 PIATSGEKIGIDLIQQ-WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ GE + ++ + + + W + + A++ P D
Sbjct: 126 FLGVFGEYEANRIWKEDVRKKQLDELTITDLWFR----DGPFIVLAREAYPGKSRASDVV 181
Query: 181 SITIDKKNKIIHRK-DADLAIIYNDKVKLKKVVE---YQYGRIPIDKNSTTLNIPIKMDG 236
N+ + R A A+I ++ L V E + + ++ +K
Sbjct: 182 VYEFATDNQELIRILTAKKAMIDDNGWGLLDVHELDTRTFVSVTRLSQFLSVRQNLKAYA 241
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ A E+ + + +S + T ++ + M
Sbjct: 242 AVELKGDTAQLPLLELSRAIEKLEESGS-NVEILRTIWHTKWSYAFSIAVMA---LLALA 297
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ S + + + F+ Y + + + G+ +L P AA + + +L+ + L
Sbjct: 298 LVTFSENIYANIGFSLILIFVQYGVHAVGATAGEQAVLPPFVAAWLGNFVMAALAGMRL 356
>gi|311745737|ref|ZP_07719522.1| membrane protein [Algoriphagus sp. PR1]
gi|126575180|gb|EAZ79530.1| membrane protein [Algoriphagus sp. PR1]
Length = 357
Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats.
Identities = 62/367 (16%), Positives = 136/367 (37%), Gaps = 32/367 (8%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM-------GELPNYSISRGAVLA 55
+L + K +LKT + +L +++V V+D E + GE+ Y I+ G L
Sbjct: 2 KLLDKLIIKDFLKTYFFVVLMLILIVLVLDFTEKNDSYIRNDVPSGEIMKYMINYGLYLN 61
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
+ P + I + + +E++ + G+S ++L PF+ ++L+G
Sbjct: 62 NL--------LTPITVFISVIFITSKMAGRTEIIAILSSGVSFPRMLRPFIFAAMLIGGV 113
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+ L+ + + + D + SD +++ D + + +
Sbjct: 114 SFLLNGWVLPVATEGVTKFKLTYIDK-TRTASDPNVHIKVGT---DSYAYLSRFYKTGNT 169
Query: 176 WEDFTSITIDKKNKIIH-----RKDADLAIIYNDKVKLKKVVEYQ---YGRIPIDKNSTT 227
FT TI + ++I+ R D A + LK + +G
Sbjct: 170 GYHFTLETI-RDGRLINKLSSDRIQWDTAK---NVWTLKNWRFRELNEFGEDYSVGEEMD 225
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ I D F + E+ +++ + + + Y + P + +
Sbjct: 226 TTLSITPDDFDLPENHHETLKLPELSRQIRVLEDRGADNVAFYKIERYVRFMSPFAAIIL 285
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
T I +S + SR +A G F+ + + ++F ++G P+ A +P I+
Sbjct: 286 TFIGVIMSAKKSR-GGSGFQIAMGFLLAFIYILLFILSRTFAENGASYPIFAVWLPNIVF 344
Query: 348 ISLSILI 354
+++
Sbjct: 345 GLTGLVL 351
>gi|154248856|ref|YP_001409681.1| permease YjgP/YjgQ family protein [Fervidobacterium nodosum
Rt17-B1]
gi|154152792|gb|ABS60024.1| permease YjgP/YjgQ family protein [Fervidobacterium nodosum
Rt17-B1]
Length = 1111
Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats.
Identities = 62/365 (16%), Positives = 132/365 (36%), Gaps = 28/365 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY K LK L G ++ V V L +I + + I + + +P
Sbjct: 2 KTLTRYVLKQALKPFFMGLAGFIVFVSVEWLYQISDYIIRN-RVGIDKLLLFVMYNIPYF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
IP L V ++ E+ G+S L+ PF++ +++LG F+ L+ +
Sbjct: 61 TFLGIPVGVLFSIFWVISDMYNNREITALLVHGVSAKHLVTPFIILALILGFFSWLLGDY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + ++ Q+ + +++ ++D++ K+ D
Sbjct: 121 VVPTANYKSSQILNQYIFQSPESVVKTNMLVEL---EKDVYFYVKEHNKAKGELYDVVLF 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKK----VVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
++ N+ A I D L +VE + G + +D + + + + +
Sbjct: 178 RNEEGNE--QILTAKKVIKRKDGWFLLDGSMYIVELKTGFLKLDMQFKEMKLDVAGEIEE 235
Query: 239 -----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
K + S+ E ++ + K + + L + + LI
Sbjct: 236 MLRAYKTTRDKTSKELREQLQ----TYKKLGINASNLIVELNQRYANALGALVIVLIGLP 291
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS----FGKSGILLPVAAALIPVILTIS 349
VSL F I ++ I F++ + + GK G++ P+ A +P I+
Sbjct: 292 VSLLFG-----FISRSWSIILTFLIIVLYQGSGAWLSGMGKEGLMDPMLATWLPNIVFSV 346
Query: 350 LSILI 354
+ ++
Sbjct: 347 VGFIM 351
>gi|300870020|ref|YP_003784891.1| putative permease [Brachyspira pilosicoli 95/1000]
gi|300687719|gb|ADK30390.1| putative permease, YjgP/YjgQ family [Brachyspira pilosicoli
95/1000]
Length = 356
Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats.
Identities = 57/352 (16%), Positives = 129/352 (36%), Gaps = 14/352 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y K +L + L+ +ILV + DL+ + E P ++ A R P +
Sbjct: 4 LNSYLLKEFLSMFVGSLILFVILVTIADLSSKLSYYTEHPE-NMKYFITYHAARTPHNLY 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ P + + V + E++ + GIS+++ +P + I L + + +A
Sbjct: 63 YLFPIALMFSSTYVLGTFVKNKEMLAVQNSGISLFKFSSPIFIIVIALCLGLIGFWQFVA 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
KI + + + + + + + + ++ + + +
Sbjct: 123 APMNKISFEANDLGRGHKKGEYTGSLNIF----GANNYIYFIENFNFNDNYLTNTVIVKL 178
Query: 185 DKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIP----IDKNSTTLNIPIKMDGFQ 238
+ I R + ++ K + + ++ + + L++ + + F
Sbjct: 179 KEDGAIDMRISSPSVRWNDNEKKWYAETGILAEFTDKKNISVKEITNYPLDVLERPEHFM 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S S E + + K + ET F++ I + L+A+ S +F
Sbjct: 239 NRP-ALDSMSLTEEMHWIKL-RKEVNLNTNTLETDFHYRISYCFSGFIIVLLASLFS-KF 295
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
S + + + I + Y+I+ + +S G G + P AA +P I+ L
Sbjct: 296 STQSVLVVSLVMVIMVALVYYSILMMFRSMGDGGNMNPFIAAWMPNIIFAGL 347
>gi|189461313|ref|ZP_03010098.1| hypothetical protein BACCOP_01963 [Bacteroides coprocola DSM 17136]
gi|189431842|gb|EDV00827.1| hypothetical protein BACCOP_01963 [Bacteroides coprocola DSM 17136]
Length = 378
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 50/359 (13%), Positives = 123/359 (34%), Gaps = 12/359 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY +L T + + + + V D+NE + + +P
Sbjct: 20 LKRLDRYIIVKFLGTYFFAIALIISIAVVFDVNENIDHFINNKAPLKAIVFDYYLNFIPY 79
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
P + I L SE++ + G+S +L+ P+++ + ++ T ++
Sbjct: 80 YTNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRLMVPYMISAGIISAVTFVLGT 139
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +G + +++K + I + ++ + F+
Sbjct: 140 EVIPTGSVTRLKFEERYKKKKSADYARNI----QLEVDSGVVAYMERYDAYSKSGYHFSL 195
Query: 182 ITIDKKNKIIHRKDADLAIIYN---DKVKLKKVVEYQYGRIPI---DKNSTTLNIPIKMD 235
+ +K++ A A + ++ + + + + I ++
Sbjct: 196 DKF-EDHKLVSHLTARRATYDTTMYHRWIIRDYMIREMRGMREYITRGDRLDSIIKMEPQ 254
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F Q + + ++ + +S + + E +++ I + +T I S+S
Sbjct: 255 DFLITRGQQETMTSPQLKEYISKQKQRGFANIKEFEVEYHRRIAMSFAAFILTSIGLSLS 314
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + S F TI +F +G ++P A IP IL + ++I +
Sbjct: 315 SRKVKGGMGLHLGIGLGLS-FSYILFQTISSTFAINGNMMPAIAVWIPNILYLFIAIYL 372
>gi|317486217|ref|ZP_07945051.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
gi|316922516|gb|EFV43768.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
Length = 385
Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats.
Identities = 66/375 (17%), Positives = 147/375 (39%), Gaps = 34/375 (9%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP +L R FK + + + L+ +I ++ + I +L P
Sbjct: 1 MPSLLQRQIFKEIANLFVLAVGVLLTLI-LISRAVQMRELFLGLDLGILDTVLLFGYMTP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L + +IP ++ + F ++ ELV RA GI+I+Q+L ++ S++ + T+ V
Sbjct: 60 LFLMLVIPIACMLSVFLTFLRMSTDRELVALRAGGINIYQMLPAPLLFSVICMLLTLWVS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
G + I + + + + + ++ + A+++ P + D +
Sbjct: 120 LHWLAWGMGHFRETILEIANTRARVVVQPGVF---NTDFPNLVLFARQVNPGDG---DMS 173
Query: 181 SITIDKKNKIIH--RKDADLAIIYNDK------VKLKKVVEYQY---GRIPIDKNSTTLN 229
+ +D ++ A D L+ Y G + + +
Sbjct: 174 QVLVDDRSHPERHMTILAPEGRFDTDTERGELVFLLEDGKIYTTDKKGASVLAFDEYKVR 233
Query: 230 IPI-----KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
+P+ +D + + I ++ + +N + + E + + P+
Sbjct: 234 LPLDSLFKSLDLGDVRPREMSWSKLSSITREEALKVDAN--YANKLEVERHKRWAYPVAC 291
Query: 285 VAMTL----IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+A+TL +A++ R Q +++A +F F+ Y+++++ S G+SG + P
Sbjct: 292 IALTLFVLPLASAFE-GLHR--QTGLMLALAMF--FVYYSLMSLGFSTGESGAIPPSIGL 346
Query: 341 LIPVILTISLSILIL 355
+P IL + L I L
Sbjct: 347 WVPNILFLCLGIYGL 361
>gi|320352233|ref|YP_004193572.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
2032]
gi|320120735|gb|ADW16281.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
2032]
Length = 360
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 65/363 (17%), Positives = 142/363 (39%), Gaps = 12/363 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L+RY ++L+ + + L +ID E + E S S A +P II
Sbjct: 3 LLYRYILAHFLRNLGMIMASFITLYLLIDFFEKIDNFLEKGK-SFSLIATFFFANIPFII 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ +V LN ++EL+ +A GI + ++ P + ++ + + + +
Sbjct: 62 DLMSPVCILLAGVVTLGVLNHSNELIALKACGIPLKKITVPIIGAALACTLLFLAMDQYV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + I + Q+ F + P+ +++++F+
Sbjct: 122 LPKTIAVTNQIWNKEIKGKVPL--GIYRNGRYYYRGQEGFYSFSRPDPQKNLFKNFSYTV 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR----IPIDKNSTTLNIPIKMDGFQK 239
DK++ A++A+ L+ + + +N P D F
Sbjct: 180 WDKEHAANTLIAAEIAVWNKGVWTLRNGQIQKAAGGDRFATQVFTNRRINFPETPDDFFV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + S ++ K+ + +A FY I L+ + + L+ + L
Sbjct: 240 PAYRSMELSLVQLYKETQHTRSEE--ERSKAWADFYGRISYTLLGLPLLLLGLPLLLLVY 297
Query: 300 RSNQPRIIVAYGIFSG--FMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + +A + G F+ + + T ++S K+ + P+AAA+ +L + +LL+
Sbjct: 298 RKWGRDLSLAIPVSCGMAFLCWGVYTTLQSLAKASYIPPLAAAISVHLLVGCVGFFLLLR 357
Query: 358 KED 360
ED
Sbjct: 358 -ED 359
>gi|217077925|ref|YP_002335643.1| putative permease, YjgP/YjgQ family [Thermosipho africanus TCF52B]
gi|217037780|gb|ACJ76302.1| putative permease, YjgP/YjgQ family [Thermosipho africanus TCF52B]
Length = 1110
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 55/362 (15%), Positives = 123/362 (33%), Gaps = 23/362 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L +Y K L L + GA I+ ++L + + I + L +P
Sbjct: 2 KVLTKYILKLSLGPFLMGI-GAFIVFASVELLYQLSDIIVRHRVGILKLFELIYYNLPYF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
IP L V L + E+ GI +L+ PF++ SI+ G + + +
Sbjct: 61 ASLGIPVGILFSIFWVLSQLYSSKEITAFLVHGIPSRKLVYPFLILSIIFGAVSFYLNDQ 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + ++ I ++ + +I Q K+ + I D
Sbjct: 121 IVPKFNQKAMETISKYVYKKPEVTIKENVLTKIDESQYFFV---KRYDQQQGILYDVVLF 177
Query: 183 TIDKKNKIIHR-KDADLAIIYNDKVKLKKVVEYQYGR-----IPIDKNSTTLNIPIKMDG 236
+ R A + L Y R + + + L++ ++
Sbjct: 178 Q---NMQSEERIITAKKVEKEENSWYLINGKMYVTDRDGFMKLDLSFSKIKLDLKDDLES 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + E+I+K+ K + + + + + + ++ +SL
Sbjct: 235 LMRVGKSPRDMTGEELIQKIKTFKKLGVDPSPWI-VELHGRYANSVGPFIIVILGVPLSL 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIIT----IMKSFGKSGILLPVAAALIPVILTISLSI 352
F ++ + + F++ + + + GK ++ PV AA P +L +
Sbjct: 294 LFGLKSKS-----WSVIFTFVIVVLYQGSGAWLSAMGKENLINPVLAAWYPDLLFAIVGF 348
Query: 353 LI 354
++
Sbjct: 349 IL 350
>gi|310822423|ref|YP_003954781.1| hypothetical protein STAUR_5182 [Stigmatella aurantiaca DW4/3-1]
gi|309395495|gb|ADO72954.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 373
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 54/364 (14%), Positives = 130/364 (35%), Gaps = 11/364 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L+RY + Y + + L + + V+D + + L +
Sbjct: 1 MRGTLFRYVARLYARFAVGILAALLTVFLVVDFVDRSRAYTGEGW--VLAVLELYWNKAL 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ Q + P L+ L + E+ RA+ L P ++ + +
Sbjct: 59 VTTQLLGPAALLLAAGAAVSTLRKRGEVTALRALTFGPASLYLPVGAVALAACLGLIAFD 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + ++ Q + + P + F+ + + D
Sbjct: 119 ERVVAQASRRVDEITTQRFNRWGDWRLYYTPKQWFRRGEHVFFLRSGSAQEG---FRDVA 175
Query: 181 SITIDKKNKIIHRKDADLAI-IYNDKVKLKKVVEYQY---GRIPI-DKNSTTLNIPIKMD 235
+T+ K+ R DAD + + ++ +L VVE + GR + ++ +
Sbjct: 176 ILTLTADFKLARRLDADTMVPLEGNRWRLTGVVERSFSPDGRTAVSAAPEAEYDLGVPAR 235
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F + E+ +++S + + + E Y P+ + L+A ++
Sbjct: 236 SFLIRPGRPEQMRLPELREQIS-ARTEVGLDSRQYELALYNRFAYPMAGLPAALVAVGLA 294
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L +R + + G+ ++ +I + K+ + + P AA +P + + ++ ++
Sbjct: 295 LRPNRKGHLTVAIVEGLLIAMAMWGLIVVSKTLVTTERMAPGLAAWLPSGVLVVVATVLW 354
Query: 356 LQKE 359
L++E
Sbjct: 355 LRRE 358
>gi|167626385|ref|YP_001676885.1| hypothetical protein Fphi_0163 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|241668816|ref|ZP_04756394.1| hypothetical protein FphipA2_08610 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254877348|ref|ZP_05250058.1| permease [Francisella philomiragia subsp. philomiragia ATCC 25015]
gi|167596386|gb|ABZ86384.1| conserved membrane protein of unknown function [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|254843369|gb|EET21783.1| permease [Francisella philomiragia subsp. philomiragia ATCC 25015]
Length = 352
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 67/370 (18%), Positives = 137/370 (37%), Gaps = 32/370 (8%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+ RY FK + L L IL F+ + S ++ ++P
Sbjct: 3 LNRIDRYIFKTVFSSFLIVSLIFCILFFIFTYLAQVSN--NDTGASNIELIIITIYQLPG 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ ++P +V ++ L SE+++ R+ G S Q+ V+ I+ I T++
Sbjct: 61 ILYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVVLVGIIGSIVTMVFGG 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
IA +K+ + + W++ + F+ I P
Sbjct: 121 YIAPVLQKLADSNTVAY--------NTHDLWLKTPDG----FMNISNIDPNEGKAYGIRK 168
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-----------VKLKKVVEYQYGRIPIDKNSTTLNI 230
I K N++ + A+ A ND K V + K + I
Sbjct: 169 F-ITKDNQVQEVRYAEKAEYVNDATANVFNVSVVTFPNKDVKHIDVKEN-VYKAIWSNPI 226
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
PI + ++ +F ++ + M ++++ +F+ I PL L+ + L+
Sbjct: 227 PISVAKVITINDN-DYLNFTQLTRYMLSNSQA----KDSISLKFWQEIFQPLALMVLILL 281
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ +S+ +RS+ + + G F GF + I I L + A P ++ + L
Sbjct: 282 SVPLSIGSTRSSTLILKLLLGAFFGFAFFIINQIFGPIALILHLPTILGAAGPTVIALIL 341
Query: 351 SILILLQKED 360
I + ++ ++
Sbjct: 342 LIYLFIKSKE 351
>gi|237736826|ref|ZP_04567307.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
gi|229420688|gb|EEO35735.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
Length = 358
Score = 124 bits (313), Expect = 2e-26, Method: Composition-based stats.
Identities = 44/357 (12%), Positives = 119/357 (33%), Gaps = 13/357 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ +Y +K + F + +F+ID+ + + SI + + +P I
Sbjct: 2 KLIDKYILNE-IKIPVIFGVSLFTFIFLIDIIVAMMENIIVKGISIIDVMRILSFYLPPI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q IP + ++ F RTSE A+G+S+ ++ P V + + +F +
Sbjct: 61 LSQTIPMGMFLGIMLTFSKFTRTSEATAMSAVGMSLRDIVKPIFVAACCVTLFIFFLQES 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I L + + ++ + + + ++ + +
Sbjct: 121 IIPRSVAKLQFLTAKIAYENPVFQLKEKTFI---DEVDEYNLYIDRMEGKEKKAKGILIF 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-----IPIDKNSTTLNIPIKMDGF 237
+ + A + + L Y + + + + + +
Sbjct: 178 QKAEDKPFPTVIVGEEAYWKDSAMVLINSKFYNFNDKGKEVLRGEFDEKRIPLAAYFSEI 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + ++K+M + + + + +P + ++L+ +S+
Sbjct: 238 EVKVKDIEAMGIGTLLKEMKDKTPAEKIP---YKVEINKKLAVPFSTMMLSLLGVFLSIG 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS + A + F T + + GI+ IP ++ L++ +
Sbjct: 295 HHRSGK-GANFALSLIVIFSYITCLNVGMVMATKGIIPAFIGVWIPNVILFLLTLFM 350
>gi|296125361|ref|YP_003632613.1| permease YjgP/YjgQ family protein [Brachyspira murdochii DSM 12563]
gi|296017177|gb|ADG70414.1| permease YjgP/YjgQ family protein [Brachyspira murdochii DSM 12563]
Length = 417
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 64/420 (15%), Positives = 129/420 (30%), Gaps = 73/420 (17%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I +Y + L +L VFVI L ++ + +P
Sbjct: 1 MKKI-TKYIILETIGPFLAGIL-FFTFVFVIQLLPELIRLIMNNGAPLLMSLETFVYMLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I IP L+ +I+ + L+ +E+++ RA+G ++ P ++ +F++
Sbjct: 59 FNIAITIPMSILMASIIGYGRLSSDNEIIVMRALGFPHMRIYMPIIILGFFTFMFSLFFN 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I + LI + N + + IGAK + +
Sbjct: 119 NVIMSESNYRYRALI-SYMVNIRPSIAVGKLEFTEISDMGFS-IGAKYADD-----KSIS 171
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK-------VKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
++ I K+ A + N++ + L V + N T+ +
Sbjct: 172 NVVIYDKSDTKRVITAKYGLWKNNEANSQVVTLTLYDGVVQEMPNYGFVTNDYTVFDSMD 231
Query: 234 MDGFQKFSEQFAS------RSFYEIIKKMSFSNKSNIFH--------------------- 266
++ + S + +EI+KK+ + +
Sbjct: 232 INIIRNVSTLTSHERGLREMPSWEILKKIKEAKSNANKSVDEQITGMINNSYNNVKNTGI 291
Query: 267 -----------------------------NYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Y +FY I IP + M LI A + +
Sbjct: 292 DITSFSNEYIKTNSAELVSIREKAIEESVPYFYYVEFYKFISIPAACLFMVLIGAPLGIV 351
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + + + Y +IT + + P+ A P I+ + +++
Sbjct: 352 GKRSGK-GFGFGISVIVVVIYYLLITAAELLAGGKKVPPILAMWFPNIVLAIMGGFFMVR 410
>gi|330752158|emb|CBL87118.1| predicted permease YjgP/YjgQ, transmembrane [uncultured
Flavobacteria bacterium]
Length = 359
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 60/363 (16%), Positives = 116/363 (31%), Gaps = 20/363 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY F +L + FL M++ V D+++ + + +
Sbjct: 4 LDRYIFFRFLGSFFLFLGLVMMIAVVFDISQKVDNFINKNADISTIIIDYYVNFLAFYGT 63
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I + I V + R SE+V + G+S +L+ PF++G+++L I + + +
Sbjct: 64 TFSSLIVFLSTIFVTGRMARDSEIVAALTGGVSFPRLIKPFLLGALVLFIGNSTLSHFVI 123
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
I + DK I + P +I + PE F+
Sbjct: 124 PKTNIARIHFEDTYVQ--DKIIKRPINIHRQVLPDH--YIYIETWSPERLGGYHFSYERF 179
Query: 185 DKKNKIIH------RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI----PIKM 234
+ I R D D L+ + G + ++ P +
Sbjct: 180 ENDRMIEKLMADFVRYDTSQKQWQVDNWTLRTW--LKSGEMKLESGRRLDTSFAFDPTTI 237
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + S + +KK S I E +++ I P + + IA +
Sbjct: 238 SPDLRSTSTMTSPQLLKYLKKERISGSEAITS---HEMEWHKRIAYPFSVFILVFIAVVL 294
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S E R I + + + + I A +P L L ++
Sbjct: 295 SSEKRRGGIGGQIAIG-LLIAVIYIFFMQLGGVLVSIPIFSAFMAIWLPNFLFTILGFVL 353
Query: 355 LLQ 357
++
Sbjct: 354 YIR 356
>gi|282892298|ref|ZP_06300694.1| hypothetical protein pah_c221o032 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281497889|gb|EFB40240.1| hypothetical protein pah_c221o032 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 361
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 119/344 (34%), Gaps = 11/344 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I RYFF+ +K F+ L +ID + Q ++ S + +
Sbjct: 10 IWERYFFREVVKLFCVFIGSFYGLYVLIDFSSHTTQFST--HFQWSEIFSYYFYELIRRL 67
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+PF ++ I +L+ +ELV A G+S+ LL PF++ + + +
Sbjct: 68 DVILPFALMLATIKTLCSLSTNNELVALMASGMSLKSLLRPFIIIGLFFTVLMYGNAEFL 127
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+K + + +K ++ I + Q I + E + D I
Sbjct: 128 LPKAQKGLKQIHDRHTSLKNKLENRGFVQHIILDDQTQILF--QYYDEERQFFFDSYWIK 185
Query: 184 IDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNSTTLNIP---IKMDGFQK 239
I R + + + Q + + P Q+
Sbjct: 186 SADD---IFRIKYLFPHLEVPLGRYVHHLTRNQNDELVESASFVEKEFPQIYFNQKKLQE 242
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+S ++++++ +N+ + + + FY + +P + + + A + FS
Sbjct: 243 TLSLPEEQSLTDLVQQLPHNNRISHEKEAQVVSHFYHKMALPWLCLFAVIAPAPFCVRFS 302
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
R +I A IF Y + K +L P+ A +P
Sbjct: 303 RGLPVFMIYACSIFGLITFYLTMDAALILAKRQVLDPIWAIWMP 346
>gi|157363796|ref|YP_001470563.1| permease YjgP/YjgQ family protein [Thermotoga lettingae TMO]
gi|157314400|gb|ABV33499.1| permease YjgP/YjgQ family protein [Thermotoga lettingae TMO]
Length = 1102
Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats.
Identities = 66/363 (18%), Positives = 135/363 (37%), Gaps = 21/363 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
GIL +Y K + L L G +I V +++ + + I + +P
Sbjct: 2 GILTKYIIKLSVGPMLIGLAGFVIFVS-VEILYQLSDLIVRHRVGIFVLLKVLYYYLPYF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ IP L+ V L+ EL+ + GIS+ L+ PF++ SI L T ++ +
Sbjct: 61 VALGIPVGILLSIFWVLSQLSTDHELMALQVHGISLKVLIVPFLILSIALSFVTYVLSDR 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + +I ++ K+ I ++ + + KK +N I ED
Sbjct: 121 IVPLYNQKADSVISKY---VYKRPEVFISENVLTKIDESQYFYVKKYDRQNGILEDVVLF 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDGF 237
+ + A + +K + Y+ R I N L++ ++
Sbjct: 178 RNEPSEE--EIITAKKVVKEKNKWFMYDGKMYRVDKDGVLRFDISFNKVELDLQEDIESI 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + E+ +++ K + + + + L V + LI +SL
Sbjct: 236 MRVGKTPKDMRSEELKERIDTFKKLGVDPAPWI-VELHTRYSLSLGPVIIVLIGIPLSLM 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIIT----IMKSFGKSGILLPVAAALIPVILTISLSIL 353
F+ ++ +G+ F++ + + + GK ++ PV +A IP + L
Sbjct: 295 FNLKSKS-----WGVILTFVIVVLYQGSGAWLGAMGKERLVDPVTSAWIPNTIFGVTGAL 349
Query: 354 ILL 356
+ L
Sbjct: 350 LFL 352
>gi|301168568|emb|CBW28158.1| putative transport-related membrane protein [Bacteriovorax marinus
SJ]
Length = 368
Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 48/359 (13%), Positives = 117/359 (32%), Gaps = 16/359 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
GIL + K + K ++ +LV V +L + N + + + +P
Sbjct: 2 GILRKLILKEWFKFFAGSVIALFLLVSVANLISGFLR----GNVTATEVMINHFIEIPGY 57
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +I P L+ ++ L SEL A G S + + S+++ I ++ +
Sbjct: 58 LNKIFPVSCLMASLFSINKLKTRSELTAIFAAGYSRKNYIIDLIFASLIVTIVQFMMTSY 117
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP-----QQDIFIGAKKILPENHIWE 177
I+ + +LI + KS + I + D FI
Sbjct: 118 ISPFFKSQRENLISESTHKFSNLKSQGLRSSTIGSGKMWYRSDDYFIAFTNYNQIKKELY 177
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-----PIDKNSTTLNIPI 232
+ T + + + + K V++ + + +N+
Sbjct: 178 NVTLYKLSADSYLEEIQAMQKVYWEKGIWIGKNVIKLDGLNLKSFPKAEENKENIINLYE 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ ++ + ++ K + K++ + FY ++ + ++A+
Sbjct: 238 TPEELRQIEADITILNIVKLWKYIDQL-KTSGININEYMVLFYDKFANSIICIIFAILAS 296
Query: 293 SVSLEFSRSNQPRIIVAYGI-FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+R + + F + + + + + G + + P+AA I +
Sbjct: 297 VSVFNPNRRSSSFGKNIAAVFFFTILYWLVYSYLIELGNNSKVPPIAATFTVPIAFTII 355
>gi|226329628|ref|ZP_03805146.1| hypothetical protein PROPEN_03538 [Proteus penneri ATCC 35198]
gi|225202814|gb|EEG85168.1| hypothetical protein PROPEN_03538 [Proteus penneri ATCC 35198]
Length = 232
Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 80/202 (39%), Gaps = 6/202 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G+L RY + L++ L L + L +I + ++G+ +++ + A +
Sbjct: 1 MFGVLDRYIGRTILQSILMTLFLLVSLSGIIKFVDQLRKVGQ-GDFTTLDAGIYAILNIL 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+Q P L+ ++ L SELV+ +A G + Q+ + +I L + TVL+
Sbjct: 60 KDVQIFFPMAALLGALLGLGALATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTVLIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A GE+ + + ++ W + + FI +I +N + T
Sbjct: 120 EWGAPQGEQYARNYRAEKIMGNSLVSTNRGMWAK----DGNQFIHINRIKSQN-EMQGIT 174
Query: 181 SITIDKKNKIIHRKDADLAIIY 202
+ K+ + A A
Sbjct: 175 LYDFNNDRKLETVRYASSATYD 196
>gi|320335817|ref|YP_004172528.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
21211]
gi|319757106|gb|ADV68863.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
21211]
Length = 366
Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 60/356 (16%), Positives = 138/356 (38%), Gaps = 11/356 (3%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY L + L+ M+ V V L E+ + S + A L A ++P I+
Sbjct: 10 DRYVMAEILPLLVAGLVVVMLAVLVGALLEVIAPLLAK-GASPALVARLVALQLPEAIKI 68
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+P L ++ L+ +E+ + A G++ +L P ++ + + + ++ +
Sbjct: 69 GLPVGFLFATLLGLSRLSSDAEIKAALAGGVAPGRLFLPVLLMGVGVTVAAFVIGETLGP 128
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ + + +Q + + P + + + I ++ P + E + +
Sbjct: 129 RAKTESLSVQRQIVLDNPRVLGLDQPGLILRDALNRA-ISVTRVRPGG-VLEGVRVVALR 186
Query: 186 KKNKIIHRKDADLAIIYN-DKVKLKKV--VEYQYGRIPIDKNSTTLNIPIK-MDGFQKFS 241
+ A + + + ++L + YQ GR +P++ + K S
Sbjct: 187 ESGGPSSIITAREGHLRDSNVLELLDGQRITYQDGRPVTVIRFRRGELPVQDLQASFKTS 246
Query: 242 EQFASR--SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ ++ K+ + ++ + + T PL +AM A +++L
Sbjct: 247 DAPKPIDTPLPQLWAKVQTYAQQHV-NAPQETTALQRKFAEPLAALAMGFFAVALALFTF 305
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS + + + + F Y ++ + G+SG L PV AA P +L + +++L
Sbjct: 306 RSG-LNVGLVWVLLLTFAYYASWSVFRVMGESGALPPVVAAWTPDVLYLVAGLVLL 360
>gi|297565836|ref|YP_003684808.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
gi|296850285|gb|ADH63300.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
Length = 378
Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 48/383 (12%), Positives = 130/383 (33%), Gaps = 47/383 (12%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY + L F G + + +I + + + + ++ ++P I
Sbjct: 4 IDRYLLREILPP---FFFGIFLYIALIAFSNLLARAQWVGGVPVTSLLQWIGLQIPFIFT 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +P TL+ ++ + L+R +EL++ +A GIS+ + ++G+ L F++ + +
Sbjct: 61 QTLPLATLLGVLIGYSRLSRENELLVMQAGGISVLRTARWILLGAAALAGFSLYLSERVV 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-QDIFIGAKKILPENHIWEDFTSIT 183
+ + G + + W+ + + D + + +
Sbjct: 121 PWANQQTAVVWWDKVATG----TSGLGWLTGRDLKIGDYLLLFDSYDNAHQEIVNVRLQQ 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI---------------------- 221
K + + A+ + N ++KL+ Y +
Sbjct: 177 W--KGQTLSVVFAERGRLENYQLKLRGFRLYTLDLAKLPVPDFQSLDEVEQYLPQLVRAQ 234
Query: 222 -----DKNSTTLNIPIKMDGF-----QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE 271
+ S + +P D E S + +++ + A
Sbjct: 235 NVSRDPQASLVITLPQNRDQLVANFAGGGFENPYPPSHW--WRRLQNPTLTPT-EAREAR 291
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS 331
+ + + L + + +A V+ R++ P + + + Y ++++ K S
Sbjct: 292 VNLHSALAVSLANLVILFLALPVAAR--RASSPAVALGLALGLTIAYYAVLSLGKLMALS 349
Query: 332 GILLPVAAALIPVILTISLSILI 354
G++ +L ++++ +
Sbjct: 350 GLIPAELGVWSANLLAVAVAFWL 372
>gi|256425866|ref|YP_003126519.1| permease YjgP/YjgQ family protein [Chitinophaga pinensis DSM 2588]
gi|256040774|gb|ACU64318.1| permease YjgP/YjgQ family protein [Chitinophaga pinensis DSM 2588]
Length = 359
Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 64/358 (17%), Positives = 116/358 (32%), Gaps = 16/358 (4%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + ++ T +Y L+ +++ VID+ E + + +P I +
Sbjct: 7 YILRKFIGTFIYSLMILLVISVVIDVTEKIDDFMSNNLSFYTIVVDYYFGFIPHIAALLF 66
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + I + +E+V G+S + L P+ VG+ L G L
Sbjct: 67 PLFIFISVIFFTSKMAYRTEIVAILCSGVSFRRFLRPYWVGAFLFGGLLWLGNRWTVPVA 126
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE-----NHIWEDFTSI 182
KI ++ Q + +++ + F P N ++ED
Sbjct: 127 NKIRTKFEAEYVHKKKAQLNMYDKTIRVDSFTYVTF---GSYDPNYKSGSNFLYEDVRGQ 183
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI---DKNSTTLNIPIKMDGFQK 239
I K K R D K KL V + K TT+ IP+ +
Sbjct: 184 NIKFKMK-ADRISWDS---VAGKWKLDYVTMRAINGLKERWWSKTDTTIKIPLNPKEMYE 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + E+ ++ + Y +V +TLI ++ +
Sbjct: 240 EKNIQEAMTTPELDTYIAREELKGAEGLNTFYVEKYRRTASSGAVVILTLIGGIIASKKV 299
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + +A GI + F L P+ A IP L L+ + L+
Sbjct: 300 R-GGSGLHLAVGIVISASYIIFLQFSTVFSIKADLNPLLAVWIPNFLFGGLAFWLYLR 356
>gi|332297891|ref|YP_004439813.1| permease YjgP/YjgQ family protein [Treponema brennaborense DSM
12168]
gi|332180994|gb|AEE16682.1| permease YjgP/YjgQ family protein [Treponema brennaborense DSM
12168]
Length = 366
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 58/358 (16%), Positives = 127/358 (35%), Gaps = 14/358 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y ++ ++ + L +++ +++L Q + + VP +
Sbjct: 12 TLLSYLYRRFMPVFIGALSFFSLVLILVELLMNLWQFIS-AQVPAADIVRVMLLYVPKTV 70
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P L + V + +EL A G+S+++ P +V S++L F + +
Sbjct: 71 SFALPLAILFASSYVLSDFYAKNELTAVFASGVSLFRFTLPLLVFSVVLSAFMFFFEDRV 130
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+L Q+ + + +D I + + + A + ++
Sbjct: 131 VVPAYAQKTELQQKLLNQEKSKNNDRIV---VIAERGAVVYKADFYDDQASRLFTLYAVV 187
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPIKMDGF 237
+ + AD A+ L V+Y P + + L P + F
Sbjct: 188 RNGDKSLRAVLRADSAVWNGSSWTLSGAVQYTMRGDTLIAEDPDPEITALLTEP--PETF 245
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + + + E ++ ++ + Q+Y P ++ + ++ +S
Sbjct: 246 RNNTVSVETVTASEARSYITHLRRAGLPTAEALS-QYYKKFSFPFVVFIVVFLSVGLS-G 303
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+R N I + I + Y + K G + P+A A PVIL I LS ++L
Sbjct: 304 KTRKNVLLISLVLCIGAAVAFYVTQMVTMLLAKFGYISPLAGAWFPVILFIFLSGVLL 361
>gi|183179747|ref|ZP_02957958.1| inner membrane protein YjgQ [Vibrio cholerae MZO-3]
gi|183013158|gb|EDT88458.1| inner membrane protein YjgQ [Vibrio cholerae MZO-3]
Length = 228
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 42/238 (17%), Positives = 84/238 (35%), Gaps = 20/238 (8%)
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
+ D+ G W + +N FI K+ EN D+ K
Sbjct: 1 MARDMRAFATSGGAIMSVRTGVWARDAND----FIFIAKV--ENEQLYGLNLWRFDENKK 54
Query: 190 IIHRKDADL-AIIYNDKVKLKKVV--------EYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ ++ + N++ +K V E +P + T+L P K+
Sbjct: 55 LSTVIFSEQVDYVANNEWLMKDAVLTRLVNDIEISKESLPEYRWRTSL-APDKLAVVTVK 113
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
E+ + + + + S + + R E + + P+ + M L+A S R
Sbjct: 114 PEELSLTGLSDYVHYLKASEQ----DSSRYELALWRKVTQPISIAVMMLMALSFIFGPLR 169
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S + G+ +GF Y L P+ AL P ++ +++++ +L +K
Sbjct: 170 SVTMGARILSGVIAGFTFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 227
>gi|116747639|ref|YP_844326.1| permease YjgP/YjgQ family protein [Syntrophobacter fumaroxidans
MPOB]
gi|116696703|gb|ABK15891.1| permease YjgP/YjgQ family protein [Syntrophobacter fumaroxidans
MPOB]
Length = 423
Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats.
Identities = 54/366 (14%), Positives = 131/366 (35%), Gaps = 22/366 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L+RY K + L+G +++ L ++ + ++++ L A +P
Sbjct: 33 MKMTLYRYLIKEQMVPLGVCLMGVSLVLITGRLFQLLKVLFT-SSFTLGDLMALVALAMP 91
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ +P +L+ ++ F LN +EL+ RA GI Q V + + + + + +
Sbjct: 92 KLMLFALPMASLLGVLLAFVRLNSDNELIALRAAGIGFHQFFPAVVSLLLGVTLISFVNM 151
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-------IGAKKILPEN 173
+ K ++ +G ++ F + + I ++
Sbjct: 152 IFVIPPTGKAFEVKLRSMARSGLPVLMKEGTFITAIPKLTFFFQSVNPTELSVRGIFVQD 211
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI- 232
E + + +I++++D++ + +V + + + L++ +
Sbjct: 212 RREEKVRLAIVAESARIVYQRDSNHLTFKIANGSITRVADDMKNAQAVSFKAYDLSLSLD 271
Query: 233 ----KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
G + + R Y +I + +F+ + P + +
Sbjct: 272 ELIGSARGSKMNKREMTLRELYRVI--------VEKTGDVGHALEFHQRLAFPSGCLLLG 323
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
LI A + R + G+ Y I++ K G++ ++ P A P +L I
Sbjct: 324 LIGAPLGA-VFRQRGRIAGITIGLVVFLAYYVILSAGKGLGENHLVHPFLACWAPNLLCI 382
Query: 349 SLSILI 354
+ S +
Sbjct: 383 AASFYL 388
>gi|320353217|ref|YP_004194556.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
2032]
gi|320121719|gb|ADW17265.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
2032]
Length = 508
Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats.
Identities = 54/364 (14%), Positives = 136/364 (37%), Gaps = 17/364 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P +L+ Y L L + F++ L + + L ++ L + P
Sbjct: 32 PLLLYSYIANELLAPFFASFLILYCVFFLVRLIPLLEVVLAL-RIGLADFIRLFSYIFPR 90
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ IIP ++ IV F L E++ +A G+S+ Q+L P ++ + + T
Sbjct: 91 MLLYIIPMASMAGVIVGFTRLTNDREILALKACGVSLKQMLPPVILIAAAIATLTGFFSI 150
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN-------H 174
+ +G L+ + ++ + + + DI + +I +
Sbjct: 151 RLIPAGALGFKQLMFEL---AKEKIDKGLKAREFTEALGDIVVYVDEIDDQQRWHGVYVS 207
Query: 175 IWEDFT--SITIDKKNKIIHRKD--ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI 230
T IT+ K + + ++ + + + + Q R + +L
Sbjct: 208 DMRGRTQPLITVAKSGHMEAEMERMTVTIVLNDGTLHNNEGTDNQVVRFGRYQLQISLRP 267
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P ++ S+ + S ++++ + ++ H +++ + +P+ ++++
Sbjct: 268 PTQIGKEDVTSQTRGAMSQQQLLRAAAKQKPNSKLHRIFLS-EYHHRLALPVGCFILSIL 326
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ L+ + + + + G+ + Y T + + G L V +P IL L
Sbjct: 327 GLPLGLQAA-PGRRAVGIPLGLVVFVLYYIAFTTARVMSEEGTLPLVLGMWLPNILFSVL 385
Query: 351 SILI 354
+++I
Sbjct: 386 TVVI 389
>gi|42526554|ref|NP_971652.1| hypothetical protein TDE1044 [Treponema denticola ATCC 35405]
gi|41816747|gb|AAS11533.1| membrane protein, putative [Treponema denticola ATCC 35405]
Length = 357
Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats.
Identities = 52/357 (14%), Positives = 117/357 (32%), Gaps = 10/357 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY K ++ T + +L ++L+ + DL + + +P
Sbjct: 2 KLLQRYLLKLFIPTFVVAMLFFILLLQLGDLFANIVAYLQN-GAQFKDIVKVMWLYIPKC 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P L NL +EL + GIS+ + P +V + + +
Sbjct: 61 IAYSVPLAILFAGSYTMGNLYAQNELTSIFSAGISLGRFTLPLLVLGFFFSVGMIFFEDN 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ L ++ + + + + + I A EN + I
Sbjct: 121 VVIKYFYEKTQLSKKLLQEEESLDTQDLVIL---SELGKIVYTADYFNAENQTLANAYII 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG----FQ 238
D+ + + + D+ Y++ + I + FQ
Sbjct: 178 VRDEDGNLSLVIKSSHMVWNEDRWTTDSAEVYRFDEKNSVSCLNNIPDNIILSEPPANFQ 237
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
K E + ++ K+ + + Y A ++++ P + + + S+
Sbjct: 238 KNLSSVDEMRISEAKEFIAALKKNGLPY-YEALSKYHRRFSFPFTIFIVLFFSISLG-GK 295
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ N + + + + + Y + K + P+A A P+ + LSI +L
Sbjct: 296 FKKNILLMSILFSLGIATLFYVTEMVTMLSAKWEYISPLAGAWTPIFIFSILSIFLL 352
>gi|254672902|emb|CBA07219.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
Length = 210
Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats.
Identities = 43/209 (20%), Positives = 86/209 (41%), Gaps = 8/209 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ +V L SEL + +A G+S +LL + I TV +
Sbjct: 61 AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + ++ NG + W++ N I +++LP+ H
Sbjct: 121 VAPTLSQKAENIKAAA-INGKISTGNTGIWLKEKN----SIINVREMLPD-HTLLGIKIW 174
Query: 183 TIDKKNKIIHRKDADLAIIY-NDKVKLKK 210
+ KN++ +AD A++ + +LKK
Sbjct: 175 ARNDKNELAEAVEADSAVLNSDGSWQLKK 203
>gi|302338546|ref|YP_003803752.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
11293]
gi|301635731|gb|ADK81158.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
11293]
Length = 360
Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats.
Identities = 46/357 (12%), Positives = 124/357 (34%), Gaps = 11/357 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L + + L+ +V +++L + + + +++ + P I
Sbjct: 4 LDLMVLRAFFHILFLSLMFFSFVVVLVELFSNLWRYLQN-DAALAEILFTSLLYYPKAIT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L + +EL+ + G+S+ + P +V S LL + + +
Sbjct: 63 LALPPSILFAIAFTLGSYQANNELLALFSSGVSLLRFTVPIIVLSALLSVGSYFFQEYLV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L + ++ + + + + +N + +
Sbjct: 123 IPKSAQKQILTDRLSGRSSVGNNNNVVIL---SGEGRFLYKIDYYNAKNRSLTGVSVLIR 179
Query: 185 DKKNKIIHRKDADLAII-YNDKVKLKKVVEYQY--GRIPIDKNSTTLNIPIKMDGFQKFS 241
D + R +++ A + + +V ++ + ++ T P + F
Sbjct: 180 DSQGNFTKRIESEWAQCDESGEWVFHRVRLFEVLSDKRVTEQFFLTYRNPELSESPSSFR 239
Query: 242 EQFASRSFYEIIKK---MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+Q S + + + + KS ++ T +Y L + + L++ S+S +
Sbjct: 240 KQIGSVNELQRKEAQVWIERLRKSGSERYHKELTAYYERFSFSLTPLIVALLSISLS-GY 298
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ N + + + + Y ++ F + GI+ P+ A +L + +S+ +L
Sbjct: 299 FKKNILLMSLLSSVIVSVLYYVSEMVLVLFAQLGIIRPITGAWTSALLFLCISLFLL 355
>gi|301060831|ref|ZP_07201645.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
gi|300445080|gb|EFK09031.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
Length = 383
Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats.
Identities = 72/369 (19%), Positives = 151/369 (40%), Gaps = 23/369 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L+RY F+ T L L + ++ + I + +S+ A + +P I+
Sbjct: 2 TLYRYIFREIWPTFLASLFVFIFIMMAARMLSITELIVTR-GVHLSQVAGMVLFLIPDIL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P +TL+ +V F L+ SE++ ++ GIS++Q+L P + S+ + V +
Sbjct: 61 TFALPAVTLMSVVVAFLRLSADSEIIAMKSSGISLYQMLPPVIFFSLAACLACVAISTFA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS-NPQQDIFIGAKKILPENHIWEDFTSI 182
A G + DL+ + + K+D+ +I P +++ E + +D +
Sbjct: 121 APWGNRSFKDLLFKI----AETKADLGIKERIFCEPFENLVFYVNSFSREERMLKDVFVV 176
Query: 183 TIDKKNKIIHRKDADLAIIYND------KVKLKKVVEYQY-----GRIPIDKNSTTLNIP 231
+ ++ + +D A I + K + G I N+ LNI
Sbjct: 177 DR-RDQEMTNTIVSDEAQIIPRPAERTITLLFLKGTIFMVEKNFEGSRTIKFNTYALNIG 235
Query: 232 IK--MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+K + + S ++I K+ + ++ ++ R + + IPL + M +
Sbjct: 236 LKDVLADLASRKKAPHELSVNQLISKLKSTPNTDKEYS-RIMRELLEKLSIPLAVFFMGI 294
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
I + + R V + + Y + I++S +G L P A IP + +
Sbjct: 295 IGVPLGAQI-RGRGRSAGVGVSLVVFALYYLFLMIIRSIASTGALSPAFAVWIPDL-FLI 352
Query: 350 LSILILLQK 358
+S++ LL++
Sbjct: 353 VSVVYLLRR 361
>gi|255536554|ref|YP_003096925.1| hypothetical protein FIC_02430 [Flavobacteriaceae bacterium
3519-10]
gi|255342750|gb|ACU08863.1| membrane protein, putative [Flavobacteriaceae bacterium 3519-10]
Length = 364
Score = 122 bits (307), Expect = 8e-26, Method: Composition-based stats.
Identities = 48/362 (13%), Positives = 129/362 (35%), Gaps = 8/362 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ + K YL T + L ++V +ID+ ++ + +
Sbjct: 2 KIIDLHIIKKYLGTFAFMLGLLTLIVLIIDVQAKAPRIESNGFSVTEFLINFYPYWIVNL 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I + + + I + +E+V + G S + P+++ S + +L +N
Sbjct: 62 IITFMSILVFISVIFFTSRMANNTEIVAIISSGASFHRFARPYLITSSFIAAIALL-LNH 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + ++ + ++ I + + +I K + F
Sbjct: 121 FVLPLANVKKNELEPYTYTAKSREEYIGNTEVSTQLSKSEYIFIKSYNRKERRGSGFMYQ 180
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVK------LKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
DK K+ ++ A+ + K L+K V ++ T + +
Sbjct: 181 KFDKNRKLTYQIIANEFSWDDKKSHFILNSYLEKTVRKDETEKLGSGDTMTKSFGHPPEE 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+++ ++I + + + + + + +P+ ++ +T + S++
Sbjct: 241 LFPGVLLGQNKTTPDLIGFIDREKEKGNANLGNYQNELHQRTSMPVSVIILTFLGLSLAS 300
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ R + +A GI F+ +K K+ L P+ A +P ++ +++ + L
Sbjct: 301 QKKR-GGLGMNLAIGISLAFVFVFSFEALKVVSKNQSLPPLLAMWLPNLIFGPVALYLYL 359
Query: 357 QK 358
++
Sbjct: 360 KR 361
>gi|325473492|gb|EGC76687.1| membrane protein [Treponema denticola F0402]
Length = 357
Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats.
Identities = 51/356 (14%), Positives = 117/356 (32%), Gaps = 10/356 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY K ++ T + +L ++L+ + DL + + +P I
Sbjct: 3 LLQRYLLKLFIPTFVVAMLFFVLLLQLGDLFANIVAYLQN-GAQFKDIVKVMWLYIPKCI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P L NL +EL + GIS+ + P +V + + + +
Sbjct: 62 AYSVPLAILFAGSYTMGNLYAQNELTSIFSAGISLGRFTLPLLVLGFFFSVGMIFFEDNV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
L ++ + + + + + I A EN + I
Sbjct: 122 VIKYFYEKTQLSKKLLQEEESLDTQDLVIL---SELGKIVYTADYFNAENQTLANAYIIV 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG----FQK 239
D+ + + + D+ Y++ + I + FQK
Sbjct: 179 RDEDGNLSLVIKSSHMVWNEDRWTTDSAEVYRFDEKNSVSCLNNIPDNIILSEPPANFQK 238
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
E + ++ K+ + + Y A ++++ P + + + S+
Sbjct: 239 NLSSVDEMRISEAKEFIAALKKNGLPY-YEALSKYHRRFSFPFTIFIVLFFSISLG-GKF 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ N + + + + + Y + K + P+A A P+ + LS+ +L
Sbjct: 297 KKNILLMSILFSLGIATLFYVTEMVTMLSAKWEYISPLAGAWTPIFIFSILSVYLL 352
>gi|297184152|gb|ADI20271.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
Length = 374
Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats.
Identities = 42/371 (11%), Positives = 121/371 (32%), Gaps = 29/371 (7%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY ++ + ++ + + V D++E + + + +
Sbjct: 4 LDRYILLKFIGSFFLTMVLILSIAVVFDISEKLDDFQNGASMN-EIIFDYYINFIAFYGN 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I + I + SE+V G S +LL P+ +G+ ++ ++ + + +
Sbjct: 63 LFSALILFISTIWFTSRMASNSEIVAILTSGTSFRRLLRPYFIGASIICALSLTLNHLLV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
I +++ ++ S + + P ++ + T +
Sbjct: 123 PQTNIKRIAFEEKYVTGVNRPISQKMH--RQVLPGH--YVYFETFSGVRESGYQMT-YEV 177
Query: 185 DKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM----DGFQ 238
+ +++ + AD + + +L ++ S + + +
Sbjct: 178 FEDHQLKSKLSADFVRLDTATGRWRLDNFRLRTLDEKGGEQISFGRRMDTALAFTSEQIA 237
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
A+ + E+ + ++ + + + + P+ L+A ++ +
Sbjct: 238 PKLNSIATMNSKELSRFIAQEELTGNENIASYQMEMQRRTSYPVSSYVFVLLAVGLASQK 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL----------------LPVAAALI 342
R I +A G+ + + + ++F K+G+L A I
Sbjct: 298 KR-GGLGINIAIGLVLTAIYIFFMQLSETFAKTGLLSSEGLLGGPLEWIGIQPAEFAVWI 356
Query: 343 PVILTISLSIL 353
P I+ +++
Sbjct: 357 PNIVFAIIALW 367
>gi|258591111|emb|CBE67406.1| putative Permease YjgP/YjgQ family protein [NC10 bacterium 'Dutch
sediment']
Length = 426
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 48/376 (12%), Positives = 129/376 (34%), Gaps = 26/376 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ R+ + + LG V ++D + + L + +P
Sbjct: 30 FCLIDRHLLREMAASF-ALGLGTFTFVLLMDQMMRLMDLIINKGAPVGVVLRLISYILPF 88
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IP L+ + + ++ E ++ + G+S+++L+ P V+ ++ T+ +
Sbjct: 89 SFTVTIPMSVLLAVLATYGRVSSEGEAIVLKTSGLSLYRLMAPGVLFGVVATFATLWIST 148
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ S K L Q + + + + I + +
Sbjct: 149 LVQPSSTKAFKTLTHQLYHTHVLTALENGIF---NTEYPGLAIYVDRSEKTDGTLHGI-- 203
Query: 182 ITIDKKNKIIHR-KDADLAIIYNDKVKLKKVVEYQYGR----------------IPIDKN 224
+ ID++N+ R A + N + + + Q R + +
Sbjct: 204 LVIDQRNQADQRLIIAQEGKLLNKDDETEAPIGLQLSRGTLQISSRDHPDRYRNLDFETY 263
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
+ + Q + E+ +++ NK + + + + +P+
Sbjct: 264 DLQILTGGTVAETVARVRQSKEMNIGELRTEIARLNKDGG-KAWPLQVELHKKFSLPIAC 322
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ +++I A +++ ++ + + +A + Y ++ +S G G + P P
Sbjct: 323 LILSMIGAPLAMRIKKAGR-GVSLALSVAFAVFYYILLATGESLGSRGRIDPALGVWFPN 381
Query: 345 ILTISLSILILLQKED 360
+ ++I ++L ED
Sbjct: 382 LTLGMIAIGLVL-TED 396
>gi|126640322|ref|YP_001083306.1| hypothetical protein A1S_0229 [Acinetobacter baumannii ATCC 17978]
Length = 266
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 37/275 (13%), Positives = 97/275 (35%), Gaps = 19/275 (6%)
Query: 91 SRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDII 150
R++GIS+W+++ + ++LL + + + + + + + +
Sbjct: 1 MRSVGISLWRIVGWVMRSALLLIVLSFALSEWVVPYTNEKAQSV--KSHRSVAALGEVKG 58
Query: 151 PWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAI-IYNDKVKLK 209
W + + FI + + D + +K + +A+ I + + L+
Sbjct: 59 YWSR----EGQRFIYIDYANSQGN-LRDIQVVDFNKDYHLQSLINAEQGKFIQDGQWTLQ 113
Query: 210 KV----VEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF 265
K + I + + +L + ++ + S ++I M + ++ +
Sbjct: 114 KASQMDILTDGNSILNNHDQQSLGLALQPKYVHMVTLDPEDLSPSQLISFMRYMDEYSQV 173
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM 325
+ F+ + P L+ + L+A S R + +F G Y +
Sbjct: 174 PKT-YQLAFWQKVASPFSLITLVLVACSFIFGPLRQQSMGFRLVIALFIGLGFYYLQDF- 231
Query: 326 KSFGKSGILLPVAAAL---IPVILTISLSILILLQ 357
G + ++ + A +P+IL +L +
Sbjct: 232 --LGYASLVYAPSPAWFVLMPIILMFGAGSYLLYR 264
>gi|328950000|ref|YP_004367335.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
14884]
gi|328450324|gb|AEB11225.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
14884]
Length = 378
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 47/376 (12%), Positives = 126/376 (33%), Gaps = 39/376 (10%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + G ++ V +I L+ + + L +VP ++
Sbjct: 4 LDRYILREAFPPFA---FGLLLYVGLILLSNLLGRAQWLVGVEFWGLVRWLWYQVPFVLN 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +P L+ ++ + L+R +EL++ +A G+ + + V + +L ++ + +
Sbjct: 61 QTLPVAVLLATLLAYGRLSRENELLVIQAGGLPLLRTARWLFVAAFVLVGVSLYMSETLI 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ L W D + + + P + +
Sbjct: 121 PRANERAAVL---WWDELTSKGNGLARLAGQDVPVGPYRLFFARYDYRTKEMVGVRLELW 177
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI--------PIDKNSTTLNIPIKMDG 236
+ + + AD + ++++L +Y +++ L ++M
Sbjct: 178 --QGETLAVIFADRGRLEENRLRLVNFRQYTLDLTRLPLPDFASLEEAEQHLRRLVRMQN 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFH-----NYRAE----------------TQFY 275
+ + + + ++ + F +Y E QF+
Sbjct: 236 VARDPSRTLTVLLPKTRSQLLAQHGGGGFEDANPISYWYERIQKTVNSPREHLEARVQFH 295
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
++ +P + + ++A +++ + + Y + Y + T+ K +G++
Sbjct: 296 SMLAVPFANLVVLVLALPIAVRKA--GSTGLAFGYSLIVTIGYYLVFTLGKLLALNGVVP 353
Query: 336 PVAAALIPVILTISLS 351
P A +L + L+
Sbjct: 354 PELGAWGANLLALGLA 369
>gi|213423382|ref|ZP_03356370.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 207
Score = 121 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 39/210 (18%), Positives = 80/210 (38%), Gaps = 8/210 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A GE++ + Q G + W + + F+ +++ + +
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE-ELAGISI 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLK 209
+ + ++ + A A + +L
Sbjct: 178 YAFNDQRRLQSVRYAASAKFDPEHKVWRLS 207
>gi|33519520|ref|NP_878352.1| putative inner membrane protein [Candidatus Blochmannia floridanus]
gi|33517183|emb|CAD83565.1| putative inner membrane protein; predicted permease [Candidatus
Blochmannia floridanus]
Length = 360
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 124/361 (34%), Gaps = 13/361 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL RY KY L L + L +I L + + YS+ +
Sbjct: 3 MSNILERYIKKYVLLNIFMIFLIFISLSSIIRLVDELRNF-QKQTYSVFEIFFCIFLNII 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + TL+ ++ L +EL+I + G+S Q+ + SI + + V+
Sbjct: 62 KDFELFLSLSTLLGGVLGLGILELRNELIIMKVFGLSNLQINLSVIKTSIFIVLLYVIYN 121
Query: 121 NPIATSGEKI--GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ + + +Q+ +K + W+ S + FI +
Sbjct: 122 IWLLPYSQYLLCSHQHYKQYNVYLFPEK-NKNLWLMDS---GNSFIHV-NYMLTTQDLLG 176
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY----GRIPIDKNSTTLNIPIKM 234
++ ++ + A ++ + + E ++ + S N +
Sbjct: 177 INLYHFTEERQLKRIIYIEKATYIDNSWSVSNINELEFVDKMQFLNRKILSYEWNTTLTP 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ S ++I + + + Y + F+ I P+ V M IA
Sbjct: 237 AILSMITVNPHFLSISKLICCIKYFDVLGQNSKY-YQLIFWDKIFSPIFGVMMLTIALLY 295
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S + + +G GF+ Y + I + + P+ ++I ++L + ++ +
Sbjct: 296 SYGPFYKKKISFRLFFGGIIGFVFYVLHQIFEILSIVYNITPIVGSIILIMLFLMINTIF 355
Query: 355 L 355
L
Sbjct: 356 L 356
>gi|291279034|ref|YP_003495869.1| hypothetical protein DEFDS_0632 [Deferribacter desulfuricans SSM1]
gi|290753736|dbj|BAI80113.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 360
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 69/365 (18%), Positives = 137/365 (37%), Gaps = 19/365 (5%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+Y K YL + + L+ +I+ + + + N + ++P I Q
Sbjct: 5 NKYLIKSYLNSLVAILIFILIIYTFFQVVQHTKYISRY-NTPFLNILIYDLMKIPYSIYQ 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P T +V L + +EL+ + G + Q+ F+ + L + + + I
Sbjct: 64 VFPVATSAAIVVTMLKLIKNNELIAYLSFGGRLRQIAVLFLSVNFLFFLILLYYSDAINP 123
Query: 126 SGEKIGIDLIQQ----WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
EKI + K +D ++ I I + ++ T
Sbjct: 124 KIEKIRAKYKDEKIFFQKHTEKLTVTDFYF------KDKESIISIDLINFDKKEFDGVTI 177
Query: 182 ITIDKKN-KIIHRKDADLAI-IYNDKVKLKKVVEYQYGRIPI---DKNSTTLNIPIKMDG 236
DK I+ R A A + N+ + + + +IP + L I
Sbjct: 178 YEKDKDTISIVKR--AKKAKYLGNNIWEFQDFKIFDVKKIPTLLKIYDKYKLKSKILTKF 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ ++ SF E+ + + +S +Y I +PL+L+ +T++ +++
Sbjct: 236 IKIKPDEPKKLSFKELSRVIKV-YESKGLSAESFRLIYYNKIAVPLILIVLTILLLPLTI 294
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
SRS Q + A + + + ++ S GK+G++ P A IL ++ILL
Sbjct: 295 TISRSYQYIKVAAKSLSVTIIFWVSYSVFYSLGKNGVINPFLANFSLHILFFIFGMIILL 354
Query: 357 QKEDG 361
KE G
Sbjct: 355 SKERG 359
>gi|269121332|ref|YP_003309509.1| permease YjgP/YjgQ family protein [Sebaldella termitidis ATCC
33386]
gi|268615210|gb|ACZ09578.1| permease YjgP/YjgQ family protein [Sebaldella termitidis ATCC
33386]
Length = 360
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/362 (15%), Positives = 133/362 (36%), Gaps = 13/362 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN--YSISRGAVLAATRVPLI 62
L RY Y+K F+LG ++ + + L E N G + +++ V +P I
Sbjct: 4 LDRYILINYIK---GFILGMLMFLLIFLLAESINVTGWIMEDKFTLKDSMVYIKYGLPEI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ +++ + + E+ + GIS + + ++ S L+ +FTV +
Sbjct: 61 LVNTAPLGILLGSLLSISKMAQRLEITAVKTAGISFRRFVLFPILFSALVSVFTVYISIN 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I K+ ++ + D+ K + + I ++ + A + ++ E +
Sbjct: 121 ILPEANKMKREMKDRKLKEDDQTKKNEKKDVYIK-LDKNRMLYASYVNKNKNLMEGIMIV 179
Query: 183 TIDKKNKIIHRKD-ADLAIIYNDK--VKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQ 238
+ I + A + + E + ++ S+ + +
Sbjct: 180 DFHENLNGIKSIYVSPSATYNSQSKIWDFGSLKELDVEKNMENEILSSEFQLRATPNEIL 239
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + E+ +K S + ++ Y + M+ I S+ ++
Sbjct: 240 EDQVKAKELTLKELREK-SVYYSRVGANTNDLFSELYNRLSFTFASFIMSFIGLSLGSKY 298
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFG-KSGILLPVAAALIPVILTISLSILILLQ 357
R I + + G+ Y I T+++S G + A + I+ +L + + +
Sbjct: 299 VR-GGAAINIGLSVLIGYSYYGISTMLRSMGPVVSVFPLYITAWLTNIVFFALGVYLFRK 357
Query: 358 KE 359
E
Sbjct: 358 AE 359
>gi|325971215|ref|YP_004247406.1| permease YjgP/YjgQ family protein [Spirochaeta sp. Buddy]
gi|324026453|gb|ADY13212.1| permease YjgP/YjgQ family protein [Spirochaeta sp. Buddy]
Length = 361
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 46/359 (12%), Positives = 118/359 (32%), Gaps = 13/359 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + L+ +++ +DL + S A L P
Sbjct: 2 KVIDRYIIRSIASVAFVTLMLCTLMLLSVDLFANLDSYLTR-KVSYLMIAKLTLLYTPEA 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + L L +EL+ G+S +++ P ++ + L F
Sbjct: 61 VLFALGPALLFSASFFLSQLQANNELICLMGSGLSYRRIVIPILMFGLALSTFQFGFSEY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + Q + + + + +P+ + A++ +
Sbjct: 121 V---HIPLSKEREVQEDSLFGLRSTYDNRNITLRDPEGAYVVHARQYSDREKRLAQVMLV 177
Query: 183 TIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYG------RIPIDKNSTTLNIPIKM 234
ID+K + R DA A +L++ Q ++ + ++
Sbjct: 178 LIDEKGSLKSRIDAPWAYWEEEKGIWRLEQARNQQVDSSLLVLHQTEEQVLYVDSFTLQP 237
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
F+ S + + + + + T F ++ L + M IA ++
Sbjct: 238 SFFRNVSNDIKTMELRTAYHYLQRIAELDPNRYPQLATDFAKRLLDSLNPLVMLFIACAI 297
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S ++ ++ I+ + + Y + + K ++ P+ IP+I+ + +++
Sbjct: 298 SYKYKKNVLLFSII-TSLGIAVIYYVVQMVTLIMAKQAVIGPLWGMAIPMIVIVCIALA 355
>gi|182413838|ref|YP_001818904.1| permease YjgP/YjgQ family protein [Opitutus terrae PB90-1]
gi|177841052|gb|ACB75304.1| permease YjgP/YjgQ family protein [Opitutus terrae PB90-1]
Length = 369
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/372 (15%), Positives = 125/372 (33%), Gaps = 27/372 (7%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
R+ + +L L + L+ V L + + EL + + VP+ +
Sbjct: 5 DRHLLREWLAILGLVLCATVGLLLVQVLYDDFRDLRELGARGL-DLWMYLFVTVPMYLAL 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P LV + V L+R +E RA G+S+ ++ P + + + + +
Sbjct: 64 VLPLALLVSLMFVLGKLHRANEFTALRAAGVSLLRITAPVWIVGMFACGLSWWLNTTVVP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS--------NPQQDIFIGAKKILPENHIWE 177
L + +++S+++P ++S NP+ D +
Sbjct: 124 WSVDESAALRDTMR---FRKESNLMPPDRVSAVYSVGFDNPRADRMWFFNRYSKWTQKAY 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNSTTLNI------ 230
T +D+ + + R A+ A ++ + E + + ST
Sbjct: 181 GVTVSIMDEHRRELQRIVAEQAWFEAERGWTFRNGRELTFRPDTGELESTVPFTERVEAQ 240
Query: 231 ----PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
P M + + +I + +++ L+ L +
Sbjct: 241 FREDPKLMLLIDRKPTDLSLPQLRRLIDYYAIEENPKG---TPYAVRYFGLVADTLAPLI 297
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
+ IA ++ R N I V+ I + Y I + ++ P+ AA +P I
Sbjct: 298 VIAIAIPFAVTGVRVN-AAIGVSKSIGLFMLYYIFSNIASALAAKQLVDPMTAAWVPNIG 356
Query: 347 TISLSILILLQK 358
++ ++
Sbjct: 357 MALVAGWFFVRL 368
>gi|260434859|ref|ZP_05788829.1| unclassified ABC-type transport system permease [Synechococcus sp.
WH 8109]
gi|260412733|gb|EEX06029.1| unclassified ABC-type transport system permease [Synechococcus sp.
WH 8109]
Length = 387
Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/331 (16%), Positives = 121/331 (36%), Gaps = 22/331 (6%)
Query: 33 LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
+ E+ QM + N I+ A + +P + +P TL+ ++ VF L+ +EL R
Sbjct: 46 MFELVRQMVDK-NLPITIAAQVLFLSIPRWLAFSVPIGTLMASLFVFTRLSANNELTALR 104
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDI-IP 151
++GI+ ++++ + S+ + +F+ + + + E+ +++ K+ I
Sbjct: 105 SLGITTKRMISAAIALSMAMTLFSFFLNDVVVPRSERYAEVNLKRGLGQAIANKTGEDII 164
Query: 152 WMQISNPQQDIFIGAKKILP--------ENHIWEDFTSITIDKKNKIIHRKDADLAIIYN 203
+ + A + L ++ +D T + + I AD AI +
Sbjct: 165 YPRFGRRTGIDGKSADRGLLQLFYSWKFQDGEMKDVTVLDFSRSG-ITQLLRADRAIWND 223
Query: 204 DK--VKLKKVVEYQYGR----IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMS 257
D+ D + E + + E ++
Sbjct: 224 DQTGWDFLDGHILTLTANGSSTKADFKRYLYPLDSAPQRLAGIEEDAVNMTVAEALQAQR 283
Query: 258 FSNKSNIF-HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS-RSNQPRIIVAY-GIFS 314
+S + + +P+ + L A++ + + R+++ V GI +
Sbjct: 284 LYEESGSIKEARKIRVRIQEKFTVPMACLVFGLFGATLGAQPTYRTSRSFSFVLTLGIIA 343
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ Y I S G G L P+ AA +PV+
Sbjct: 344 --IYYVIGFSFSSLGVKGTLSPILAAWLPVV 372
>gi|269121333|ref|YP_003309510.1| permease YjgP/YjgQ family protein [Sebaldella termitidis ATCC
33386]
gi|268615211|gb|ACZ09579.1| permease YjgP/YjgQ family protein [Sebaldella termitidis ATCC
33386]
Length = 364
Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 45/360 (12%), Positives = 130/360 (36%), Gaps = 13/360 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y +K + +++ + ++ + +I ++ + VP +
Sbjct: 2 KIIDKYIYKALILPSVFGISIFTFILIINVFIDIMEKLFTN-DLPFLLVIDYFIYLVPGV 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q IP + ++ + N + T+E++ + G S++++ P ++ ILL + + +
Sbjct: 61 LTQTIPMGAFLGVMLTYGNFSETNEIIAIESAGTSLFRITRPAIIFGILLTVLGLFMEIE 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + ++ ++ S+ ++ ++ F
Sbjct: 121 VNPRALNNINIEKRNLFSSKPSSLTEAKVFLSNSDAGFGFYV--DEVDNSKAEASKFVLF 178
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-------PIDKNSTTLNIPIKMD 235
K+ + A+ A + LK V + + + ++ ++ K +
Sbjct: 179 QRTKEGEYPTVFFAEKAKFEAGYMLLKNVEGFNFDKTGDRKVVARYEEQYLPMSTFFKQE 238
Query: 236 GFQKFSEQ-FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+K S R E K+ S + + + + ++ I+ P V + + +
Sbjct: 239 DIEKKSRSEMNLRELREAYKQ-SIAEGESYEDSVKYMIKYNERIIGPFASVLLCWLGVLL 297
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
++ RS + I + F + + K + + P A +P + + L +++
Sbjct: 298 AVSNKRSGK-GISFGISLIVIFAYIGLASYAKIVVQKNHIDPNIAMWMPNFILLVLCLVL 356
>gi|302391952|ref|YP_003827772.1| permease YjgP/YjgQ family protein [Acetohalobium arabaticum DSM
5501]
gi|302204029|gb|ADL12707.1| permease YjgP/YjgQ family protein [Acetohalobium arabaticum DSM
5501]
Length = 372
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 62/369 (16%), Positives = 138/369 (37%), Gaps = 25/369 (6%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
M I + +Y K L L+ I++ L E+ + + + ++S L +
Sbjct: 1 MIPIKLIDKYILKEVTILFLIGLIIISIIMLSSFLFELTDLI-IIRKVALSSVLKLLIYK 59
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P II + IP L I+ L++ +E+ R ISI++L+ P ++ +++ L
Sbjct: 60 LPTIIVRAIPMSVLFATIIGLGRLSKDNEITALRMGSISIYRLILPLIILGLIISGGNYL 119
Query: 119 VINPIATSGEKIGIDLIQQ--WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
+ + K ++ + K + K +I ++ K
Sbjct: 120 LNEKVVPFSNKRFQVIMNETVLKSRMPEIKENIFF-----KGTRNKLFYIGKYNESQSTV 174
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQY-------GRIPIDKNSTTL 228
+D +D K + A+ +Y ++K +L + Y+Y + +
Sbjct: 175 KDIVIYELDSKQDYPNIIMANKGRVYKDNKWELNEGYIYKYNNDGNLINKDKFKDITVGF 234
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
I Q+ + + + E I+ + K +++ +P +
Sbjct: 235 KANINRFADQQSPSEMSIKELKEEIEFL----KKIGADPNSLLVEYHLKFAMPFSALIFI 290
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+ + +S++ S I+ I Y ++++ +S G++ + P+ AA + + I
Sbjct: 291 LVGSILSIKGKNSKGVNILFTIIIIF--FYYLLLSLSRSLGRNEVFSPLVAAWLTNFIFI 348
Query: 349 SLSILILLQ 357
L IL
Sbjct: 349 ILG-AILFY 356
>gi|294782104|ref|ZP_06747430.1| permease, YjgP/YjgQ family [Fusobacterium sp. 1_1_41FAA]
gi|294480745|gb|EFG28520.1| permease, YjgP/YjgQ family [Fusobacterium sp. 1_1_41FAA]
Length = 359
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 55/365 (15%), Positives = 119/365 (32%), Gaps = 19/365 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y LK + + +F++D+ + + S+ L + +P I
Sbjct: 2 KIINKYILDE-LKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q IP + ++ F +R SE V + G+SI +L P + +I IF + +
Sbjct: 61 LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRAILKPILAIAIGSAIFILFLQES 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + + + ++ + I K+ +
Sbjct: 121 IIPRSFVKLKYVGTKIAYENPVFQLKEKTFI---DNLDQYSIYVDKVESDGKAKNIIAFE 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR--------IPIDKNSTTLNIPIKM 234
+ K K + A ++ + LK+ + +K +
Sbjct: 178 KPEDKTKFPMVLTGEEAFWKDNSIILKQSQFISFDETGKKNLTGTFDEKRVVLTPYFENL 237
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ K E + + I+K+ + + + + + + + + +I +
Sbjct: 238 NLKIKDVEALSITDLVKNIRKVEAEE------VLKYKIEIFRKLALIFSTIPLAVIGFCL 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
SL R ++ V + F + I +G L P A P +L L +
Sbjct: 292 SLGHHRISKKYSFVL-AMIIIFAYIIFLNIGIVMASAGKLHPFIATWTPNVLLYFLGYKL 350
Query: 355 LLQKE 359
KE
Sbjct: 351 YRAKE 355
>gi|39997020|ref|NP_952971.1| hypothetical protein GSU1922 [Geobacter sulfurreducens PCA]
gi|39983908|gb|AAR35298.1| membrane protein, putative [Geobacter sulfurreducens PCA]
Length = 399
Score = 119 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 50/356 (14%), Positives = 115/356 (32%), Gaps = 20/356 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L+RY L ++ + L ++ + L +P
Sbjct: 12 MSRLLFRYICTETAVPFALGLTVFTFVLLMGRLLKLAEMVFAR-GVPFLDVTRLILYMLP 70
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IP L+ ++ L+ SE+ +A G+SI + P + ++ T V
Sbjct: 71 SFFLVAIPMAFLLAVLLAMGRLSADSEVTAMKASGMSIGTIAVPVIAFGVITYAATTFVS 130
Query: 121 NPIATSGEKIGIDLIQQ-WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
G + + ++ + ++ + I P++
Sbjct: 131 VYALPWGNTAFKKFLHGVIETRAAMSITEKVF----NDEFPGLVIYVDGFDPKSGRISGI 186
Query: 180 TSITIDKKNKIIHRKDADLAIIYND------KVKLKKVVEYQ----YGRIPIDKNSTTLN 229
++ A + + +++L ++ G ++ S L+
Sbjct: 187 LIHDERNPDEPST-IFAASGQLATNPEERIVRLRLNNGGIHRGIGTGGYRLVEFTSYDLS 245
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
I ++ + QK + E++ +M + + + +P V +
Sbjct: 246 IALQREQ-QKARLNEEDMTLGELLARMKSPGEQPKLVREMH-FELHKRFALPFACVVFAV 303
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
IA + ++ RS + A GI + Y +++ K+ + GI A IP +
Sbjct: 304 IAVPLGIQNQRSGRAG-GFAAGIILLMLYYILMSAGKTVNEKGIAPAFVAVWIPNV 358
>gi|108760212|ref|YP_631129.1| hypothetical protein MXAN_2918 [Myxococcus xanthus DK 1622]
gi|108464092|gb|ABF89277.1| putative membrane protein [Myxococcus xanthus DK 1622]
Length = 371
Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats.
Identities = 58/365 (15%), Positives = 133/365 (36%), Gaps = 13/365 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G L+ Y + YL+ L L G +++ V+D + + A L +
Sbjct: 1 MRGTLFIYVLRTYLRFALGILAGLVLVFVVVDFVDRAKLYTGPGW--VWDAAELYFYKAM 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +QQ+ P L+ L + E+ RA+ L P +V S + + V
Sbjct: 59 MSVQQLGPAALLLAAGTTVSALRKQGEVTAIRALTFGPSALYLPILVASFVACVGLVAFD 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+AT + ++ Q + + P F+ ++D +
Sbjct: 119 ERVATYSGRRVDEITTQRFNKWGDWRFYYTPKQWFRRGDNIFFLRGGSAQEG---FQDVS 175
Query: 181 SITIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQY---GRIPIDK-NSTTLNIPIKM 234
T+ + + R DA + + +L VVE + G+ + + ++ + +
Sbjct: 176 VFTVTESFDLQRRLDA-SGMFPVEGMRWRLTDVVERTFDGEGKTSVRQLPEAEYDLGVAV 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
F+ + E+ +++ + + + E + P+ L+ +
Sbjct: 235 TAFRIRPGRPEQMRASELREQI-VARRDVGLATKQFELALHNRFAYPMAAFPAALLGVGL 293
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+L +R + G+ + ++ ++ + ++ + L P AA P +L ++ +
Sbjct: 294 ALRANRRGHLTAAIIEGLLTAVAMWGLMMVCRTLVLTERLSPGVAAWTPTVLLGLIAGAV 353
Query: 355 LLQKE 359
LQ+E
Sbjct: 354 WLQRE 358
>gi|162148705|ref|YP_001603166.1| permease [Gluconacetobacter diazotrophicus PAl 5]
gi|209545528|ref|YP_002277757.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787282|emb|CAP56876.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
gi|209533205|gb|ACI53142.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 377
Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats.
Identities = 56/371 (15%), Positives = 120/371 (32%), Gaps = 22/371 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G+L RY + L + L+ ++ L E + E + + A PL+
Sbjct: 15 GVLTRYLTRELAGRILTAGAILLALMEILALLEQLTPILER-HQGLRGALYFMALHAPLL 73
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I P L+ ++V+ ++ SE+ I RA G++ L+ + + LG+ L+ +
Sbjct: 74 LGSIFPLAVLIGSLVMLVHMTTASEIAILRAAGLTTPALVRLMLPAVLGLGLAATLIDDQ 133
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ E + L + W ++ W + + +
Sbjct: 134 VTPRAE---LALARWWNLTDPHPEAGRSFWFR----SGTTLVDVGYVAQGGRELGMVDVY 186
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT-----------LNIP 231
D ++ A N + + L P
Sbjct: 187 GRDGSGRLSRVAHLGGAHYANGEWTGTDARGLTVLPSEVIPAPAEPAAEAAGPMRGLGWP 246
Query: 232 IKMDGFQKFSEQFASRSFYE-IIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ + + M + T + PL + M L+
Sbjct: 247 AGLRPDDMVRLSMDTPPLAASTMVAMMRDRAPSTQPPAALRTALLGRALTPLTFMVMLLL 306
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A V RS + + + +G + ++++ G +G L P AA +P I+ +
Sbjct: 307 AIPVVYIPPRSGTRSWLPVWCLGAGLLFVVFQGLLQALGNAGSL-PALAATLPGIVIFTF 365
Query: 351 SI-LILLQKED 360
++ ++L+ E+
Sbjct: 366 AVSALMLRIEE 376
>gi|163788640|ref|ZP_02183085.1| hypothetical protein FBALC1_10402 [Flavobacteriales bacterium
ALC-1]
gi|159875877|gb|EDP69936.1| hypothetical protein FBALC1_10402 [Flavobacteriales bacterium
ALC-1]
Length = 340
Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats.
Identities = 54/341 (15%), Positives = 128/341 (37%), Gaps = 11/341 (3%)
Query: 20 FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVF 79
LL + + +DL E ++ E + P + I
Sbjct: 1 MLLLFIPIGITVDLAEKVGKILEN-KAPFGEVTAYYVDFTIYFANLLFPLFLFLSVIWFT 59
Query: 80 FNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWK 139
L +E+V + G+S + L P+++G+ ++ IF +++ ++ K + ++
Sbjct: 60 SKLANNTEIVAFLSSGVSFTRFLRPYLIGATVVAIFALVLGMYLSPMASKGFNEFKFKYL 119
Query: 140 DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLA 199
+ + + QI++ +I P++ FT I + N++ ++ A+
Sbjct: 120 KKNKQVQQTRDVYQQINDND---YIFVSSFSPKSKTGMKFTYEHI-EGNELKYKIFAENI 175
Query: 200 II--YNDKVKLKKVVEYQYG---RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIK 254
+ +L V+ + + S ++ P +++ ++S+ E++
Sbjct: 176 RYIEKDSTYRLTTYVKRSFENGVERIEKERSKDMHFPFELEDLTPVQYAAETKSYGELLD 235
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
++ + + R E +P+ + +T+IA +VS R + +A+GI
Sbjct: 236 FIAAEKRRGSPNIGRYEVVKQKKWSLPVSIFILTIIAVAVS-SVKRRGGMGVNLAFGIAI 294
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + I + V A +P L L+I +L
Sbjct: 295 AMIYVFLDKIFGVMAEQANFPAVIAVWLPNFLFGILAIYLL 335
>gi|308272621|emb|CBX29225.1| hypothetical protein N47_J02060 [uncultured Desulfobacterium sp.]
Length = 409
Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats.
Identities = 67/372 (18%), Positives = 141/372 (37%), Gaps = 26/372 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY FK L L L + + I N + N S+ + ++ +P +
Sbjct: 21 IVSRYLFKEILSPFAINTLFFTFLFLMAKILFITNLVVNY-NMSLPKIGLMLLYIIPNFL 79
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IP ++ ++ F + +E++ + GISI+ LL P ++ + I T L+
Sbjct: 80 VFVIPMSVMMAILLTFLRFSSDNEIIALKTGGISIYGLLPPVLIFCFIGCILTFLISLYA 139
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-QDIFIGAKKILPENHIWEDFTSI 182
G L + + +I + N +DI + K+ + D +
Sbjct: 140 IPWGRLSIEKLTMEI----AQSNFEIGLKERTFNDNFKDIMLYVNKVDLKKDELIDV-FV 194
Query: 183 TIDKKNKIIHRKDADLAII---YND---KVKLKKVVEYQYGRIPIDKNS---TTLNIPIK 233
+ + A ++ N +++L V Q NS T +I +
Sbjct: 195 EDGRSEDMASTIIAPKGVLLFEENRLSFRLRLYDGVINQVNTKNKSVNSIGFDTYDINLD 254
Query: 234 MDGFQKFSEQFASRS------FYEIIKKM-SFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+ E+ R FYE++ + SF K++ ++N E + +P
Sbjct: 255 LKNAFSEMEKTGQRKNEKKMYFYELLDYIDSFKIKNSRYYNALFE--LHKKFSVPFACFV 312
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
+ +++ ++ + S + G+ + Y I+++ + G++G P P IL
Sbjct: 313 LGILSVALGTQLK-SATRSFGLGLGLIFFLLYYLILSVGYALGETGFYPPFIGMWAPNIL 371
Query: 347 TISLSILILLQK 358
S+ I + ++
Sbjct: 372 IGSIGIYLFIRT 383
>gi|329114704|ref|ZP_08243462.1| Permease YjgP/YjgQ Family Protein [Acetobacter pomorum DM001]
gi|326695970|gb|EGE47653.1| Permease YjgP/YjgQ Family Protein [Acetobacter pomorum DM001]
Length = 358
Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats.
Identities = 52/360 (14%), Positives = 122/360 (33%), Gaps = 12/360 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY L ++ + L+ ++ L E + + + + AA R P ++
Sbjct: 5 VLLRYLSMALLTRVIFCGAVLVGLLEILALLEQTTPILQR-HLGVQGILSFAAMRAPFLL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P L+ +++ + SE+ I RA G+S + L + ++++G V++ + +
Sbjct: 64 AGALPLSVLIGALLMLTQMTLASEIAILRACGLSTFGLYKYLIPATLVIGFAGVVLDDQV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E+ L W ++ W + ++
Sbjct: 124 TPRSEQA---LAAWWNRTDPHPENGHAFWF----HDGNRIAHIGYTSDGGNMLAKVDIYI 176
Query: 184 IDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDK--NSTTLNIPIKMDGFQKF 240
D ++ A A + L V + + ++ + ++
Sbjct: 177 RDTNGRLQQILHAKSADYTHTRGWLLHNVDSITVEGEKTTRLPSVQNMSWDTSLHPWEFI 236
Query: 241 SEQFASRSFYE-IIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ I M + E + P L+ + LIA
Sbjct: 237 RLSAENPPLSSTTILGMLQGRLPSHTSPGFLEAGLLERFLRPASLLVLLLIALPTIYIPP 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
R+ + + + G + + ++++ G +G+L P A + +I+ +I +LL+ E
Sbjct: 297 RTGTRSWVPVWCLGCGLLFIIVQGMLRAMGNAGLLPPAIATIPALIIFTLGAITVLLRNE 356
>gi|88802489|ref|ZP_01118016.1| hypothetical protein PI23P_07865 [Polaribacter irgensii 23-P]
gi|88781347|gb|EAR12525.1| hypothetical protein PI23P_07865 [Polaribacter irgensii 23-P]
Length = 351
Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats.
Identities = 63/351 (17%), Positives = 136/351 (38%), Gaps = 12/351 (3%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR-VPLIIQQIIPFITL 72
+ T L+ LL + + ID++E + E PN IS + +P
Sbjct: 1 MVTFLFTLLILIPIAIAIDVSEKIDNFLEHPNLGISEVLNDYYINFIIYYSNTFMPLALF 60
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
+ I+ L+ +E++ +S + L P+ +G+ L+ + ++ + + + KI
Sbjct: 61 IAVILFTSKLSSNTEIIAITNAKVSFTRFLYPYFIGASLVTLLSLAMNHYVVPKSSKIRK 120
Query: 133 DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIH 192
+++ ++ + + +I + N++ DF S T D K+I
Sbjct: 121 GFEKKYINSSKQSNALKYVSNFSLQLTDSTYIFIRSFNTANNMGYDFNSETYDGI-KLIS 179
Query: 193 RKDADLAIIYND-------KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
+ +D + + + + E + +K T N K D K +
Sbjct: 180 KLSSDNIMYNPKDSTFTLTGWRKRLIYEKRDRIFSGNKLDTVFNFSTK-DLVYKSAFAQE 238
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
S E++K ++ S K + + +FY +P+ +T+IA +S R
Sbjct: 239 MPS-GELLKYINISKKRGVKNLNAYLVEFYKRTSLPIASYILTIIAVGLSFRKKR-GGTG 296
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ +A G+ F+ + + + G + +A IP I+ ++I + L
Sbjct: 297 VNLAIGVGIMFLYVFFMKVGEVLGSVAGVDSLAYVWIPNIIFGVVAIYLYL 347
>gi|149371725|ref|ZP_01891141.1| hypothetical protein SCB49_09980 [unidentified eubacterium SCB49]
gi|149355352|gb|EDM43912.1| hypothetical protein SCB49_09980 [unidentified eubacterium SCB49]
Length = 338
Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats.
Identities = 44/287 (15%), Positives = 103/287 (35%), Gaps = 11/287 (3%)
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
I L +E++ + G+S ++ L PF++G+ ++ + + + +A +
Sbjct: 53 SVIWFTSKLANNTEVIAFLSSGVSYYRFLRPFMIGATIIFVLGLGLTLYLAPLASTGYNE 112
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
++ K+ D + N +I ++ FT +++ K++++
Sbjct: 113 FTYKYLVR--KKDRDKGNIFRQINDND--YIYVSYFNTLDNSGSHFTLEHFEEE-KLVYK 167
Query: 194 KDADLAIIY--NDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQKFSEQFASRS 248
A+ + L+ + G + S K++ + +
Sbjct: 168 ISANRIRYNEKDSTYTLQSYKKRTIGVNDDILESRASLDTTFSFKLEDLTPVKYIAETLN 227
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+ ++ + + + R + Y IP + +T+IA SVS R +
Sbjct: 228 YSKLNSYIEQEKERGSSYINRYVLEKYKRFSIPFSVFILTIIAVSVS-SVKRRGGMGANL 286
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
A GI G + I + + P+ A P ++ L+I +L
Sbjct: 287 AIGIGIGMIFVFFDKIFGTLAQQSDFSPLVATWFPNVIFAILAIYLL 333
>gi|91215236|ref|ZP_01252208.1| hypothetical protein P700755_13102 [Psychroflexus torquis ATCC
700755]
gi|91186841|gb|EAS73212.1| hypothetical protein P700755_13102 [Psychroflexus torquis ATCC
700755]
Length = 337
Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/340 (14%), Positives = 117/340 (34%), Gaps = 11/340 (3%)
Query: 23 GAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNL 82
+ + +++L+E + + E I V + P + I L
Sbjct: 1 MFIPIGIIVNLSEKIDDIKEN-EVPIEEVLVFYGNFTIYFANLLFPIFLFLSIIWFTSKL 59
Query: 83 NRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNG 142
+E++ + GIS + L P+++G+ L+ ++ + + + + Q+ G
Sbjct: 60 ANNTEIIAILSSGISFSRFLRPYLIGATLVCGIALMFTMYLVPNASQGFNEFKYQYFKKG 119
Query: 143 DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY 202
+ + + Q+++ + FI A +FT + + ++ + A
Sbjct: 120 KQSQETQNVYRQVNDNE---FIFATNFQTSTGTARNFTLEHFEGQ-EMTFKISASRLKFN 175
Query: 203 --NDKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMS 257
+ L + ++S +P + + + E+ ++
Sbjct: 176 AKDSTYTLNNFEKRTINEREDVIERQSSLDTILPFEFGELTPVEYIAETLDYGELKDFIT 235
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ + + Y +P+ +T+IA SVS R +A GI F
Sbjct: 236 TEKRRGSANISSYQIVAYKRWSVPVSAFILTIIAVSVSA-MKRRGGMGANLAIGIVIAFA 294
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + + + P+ A IL L+I +L++
Sbjct: 295 FIFLDKVFGTIAEKSTFSPLIAVWFSNILFGLLAIYLLIK 334
>gi|327398670|ref|YP_004339539.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
gi|327181299|gb|AEA33480.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
Length = 348
Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 70/362 (19%), Positives = 140/362 (38%), Gaps = 20/362 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I +Y ++LKT L ++L + D + + SI P
Sbjct: 1 MKKI-HKYITIFFLKTFFISLAFFVLLFVLSDFFSNLSDIVGN-GVSIKYIISYYVYYTP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
II +PFI + ++V L+ +E+++ R+ G+SI+++ P + SI++ +
Sbjct: 59 FIIYFSLPFIFALSSLVSLGYLSSKNEIIVMRSSGLSIFKIAKPVLFFSIIVAVLMFASK 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I G + + + N K + W ++ N +FI + N++ + T
Sbjct: 119 ELIVNYGLEKASFVKHYYFKN----KQFKLGWTKVGN----MFIKVNGLNVTNNMAYNVT 170
Query: 181 SITIDKK-NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ +DK N++ A ++ + + I +
Sbjct: 171 AYRVDKDFNRVEAIITAKRVKFKPKEIIFIDGCSFNMPNFSQGRCFKDFKIKTNKSFYSL 230
Query: 240 FSEQ-FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE- 297
FS F S IK + FS K ++ +Y + V P + +TLI+ L+
Sbjct: 231 FSSSKFKEPS----IKSLVFSYKHSLDKDYYLSLIIH-RFVYPFSCIILTLISFVFVLKT 285
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTII-TIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R V F++Y ++ S G+ ++ P + +I ++ +S+S+ LL
Sbjct: 286 NPRRGGFVKNVFSS-SLVFLVYIGSLELISSMGRYSMVDPNISIVIFILFWLSVSVYNLL 344
Query: 357 QK 358
+
Sbjct: 345 KL 346
>gi|258542690|ref|YP_003188123.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
gi|256633768|dbj|BAH99743.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
gi|256636827|dbj|BAI02796.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
gi|256639880|dbj|BAI05842.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
gi|256642936|dbj|BAI08891.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
gi|256645991|dbj|BAI11939.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
gi|256649044|dbj|BAI14985.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
gi|256652031|dbj|BAI17965.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655088|dbj|BAI21015.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
Length = 364
Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 57/368 (15%), Positives = 125/368 (33%), Gaps = 28/368 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY L ++ + L+ ++ L E + + + I AA R P ++
Sbjct: 11 VLLRYLSMALLTRVIFCGAVLVGLLEILALLEQTTPILQR-HLGIQGILSFAAMRAPFLL 69
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P L+ +++ + SE+ I RA G+S + L + ++++G V++ + +
Sbjct: 70 AGALPLSVLIGALLMLTQMTLASEIAILRACGLSTFGLYKYLIPATLVIGFAGVVLDDQV 129
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E+ L W ++ W + ++
Sbjct: 130 TPRSEQA---LAAWWNRTDPHPENGHAFWF----HDGNRIAHIGYTSDGGNMLTKVDIYI 182
Query: 184 IDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
D ++ A A + L V + T +P D +
Sbjct: 183 RDASGRLQQILHAKSADYTHTRGWLLHNVDSITV------EGEKTTRLPSVQDM--GWDT 234
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYF-----------LIVIPLMLVAMTLIA 291
F + + + + I R + + P L+ + LIA
Sbjct: 235 SLHPWEFIRLSAENPPLSSTTILGMLRGRLPSHTSPGFLEAGLLERFLRPASLLVLLLIA 294
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
R+ + + + SG + + ++++ G +G+L P A + +I+ +
Sbjct: 295 LPTIYIPPRTGTRSWVPVWCLGSGLLFIIVQGMLRAMGNAGLLPPAIATIPALIIFTLGA 354
Query: 352 ILILLQKE 359
I +LL+ E
Sbjct: 355 ITVLLRNE 362
>gi|206889444|ref|YP_002249741.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206741382|gb|ACI20439.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 369
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 71/362 (19%), Positives = 141/362 (38%), Gaps = 32/362 (8%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNY--SISRGAVLAATRVPLIIQQIIPFI 70
+++T L L L+ ++ L E ++ + Y S + +P I +IPF+
Sbjct: 14 FVRTFLVLLFSMSCLLSIVGLIE---KIDDFMPYKPSTTFFIEYGLYSIPRYIFYLIPFV 70
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
TLV ++ +F R+ E +I G + LL PF++ I++ I + + K
Sbjct: 71 TLVTSLFIFSIGVRSREFLILSVSGGRLRGLLKPFLILGIVISIVGFIFGEFLQPEFTKK 130
Query: 131 GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
+I++ G + ++ + I K + ++ I K + +
Sbjct: 131 LNFMIEELTQKGKSSIQKELF-VRAKDG---TVIKIGKFSQQQKKADEVKIFII-KNDAL 185
Query: 191 IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN---STTLNIPIKMDGFQ--KFSEQFA 245
I R D+ A I D+ KLK + Y + ++K LN+ I + F+ K E+F
Sbjct: 186 IKRIDSQEAEIEQDQWKLKNSIVYDFVAGKVEKYDLMDYPLNLKISIAAFKDIKKIEEFG 245
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE-FSRSNQP 304
+ K++ K N + +T + + M ++ S+ L + + N
Sbjct: 246 IAELIQKRKEL----KKVGLSNPKIDTDISSRLSYNFVTFFMMILGMSLPLGAYEKFNFL 301
Query: 305 R------------IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
I V G+ + + + ++ G S IL P + I ++ +SI
Sbjct: 302 FSKGKGGSAAGGIITVGIGLVITIIYWLVYSLFMFMGYSKILPPFISPWITPLIFGFVSI 361
Query: 353 LI 354
+
Sbjct: 362 KL 363
>gi|326388616|ref|ZP_08210209.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
gi|326206867|gb|EGD57691.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
Length = 420
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 47/364 (12%), Positives = 134/364 (36%), Gaps = 22/364 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ +Y + L + A L+ + + ++ + + + + A +P
Sbjct: 7 IDKYIARLVFVPMLSVFVIAASLLVLDKMLKLFDFVATQGG-PVGIVFKMLANLMPEYAS 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IP ++ ++ F L +SEL + RA+G+S +LL + + +L +L+++ +
Sbjct: 66 LAIPLGLMLGILLAFRKLATSSELDVMRAVGLSYTRLLRVPYILAFVLAALNLLIVSYVQ 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+L + + + + ++ Q + + + + + +
Sbjct: 126 PLSRYYYEELQFELRSGALGASIKVGEF---NSLQDRTALRVESSRDDGRQLQGIFARVV 182
Query: 185 DKKNKIIHRKDADLA--------------IIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI 230
K +I+ A + + ++ + + + +++
Sbjct: 183 GKDGQIL-VISAREGQFFANRENPDTVILRLTDGQIVQESPTIRNPRVLTFASHDLPIDL 241
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P K++ F++ +Q E++ + +S S Y++ +F +V M+ + ++
Sbjct: 242 P-KIEQFRRRGDQDREYFLPELLH-IGWSQDSTPQMRYQSLASLHFRLVEVAMMFLLPML 299
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A ++++ RS+ + V I + + + G + P A P + +L
Sbjct: 300 AMALAVPPKRSSSS-LGVFVSIILVVAYHKVNEYGQDVSSLGRIDPTIALWGPFFIFAAL 358
Query: 351 SILI 354
+ +
Sbjct: 359 IMWM 362
>gi|298506037|gb|ADI84760.1| membrane protein, YjgP-related [Geobacter sulfurreducens KN400]
Length = 388
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/356 (14%), Positives = 115/356 (32%), Gaps = 20/356 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L+RY L ++ + L ++ + L +P
Sbjct: 1 MSRLLFRYICTETAVPFALGLTVFTFVLLMGRLLKLAEMVFAR-GVPFLDVTRLILYMLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IP L+ ++ L+ SE+ +A G+SI + P + ++ T V
Sbjct: 60 SFFLVAIPMAFLLAVLLAMGRLSADSEVTAMKASGMSIGTIAVPVIAFGVITYAATTFVS 119
Query: 121 NPIATSGEKIGIDLIQQ-WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
G + + ++ + ++ + I P++
Sbjct: 120 VYALPWGNTAFKKFLHGVIETRAAMSITEKVF----NDEFPGLVIYVDGFDPKSGRISGI 175
Query: 180 TSITIDKKNKIIHRKDADLAIIYND------KVKLKKVVEYQ----YGRIPIDKNSTTLN 229
++ A + + +++L ++ G ++ S L+
Sbjct: 176 LIHDERNPDEPST-IFAASGQLATNPEERIVRLRLNNGGIHRGIGTGGYRLVEFTSYDLS 234
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
I ++ + QK + E++ +M + + + +P V +
Sbjct: 235 IALQREQ-QKARLNEEDMTLGELLARMKSPGEQPKLVREMH-FELHKRFALPFACVVFAV 292
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
IA + ++ RS + A GI + Y +++ K+ + GI A IP +
Sbjct: 293 IAVPLGIQNQRSGRAG-GFAAGIILLMLYYILMSAGKTVNEKGIAPAFVAVWIPNV 347
>gi|254303140|ref|ZP_04970498.1| possible ABC superfamily ATP binding cassette transporter membrane
protein [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
gi|148323332|gb|EDK88582.1| possible ABC superfamily ATP binding cassette transporter membrane
protein [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
Length = 359
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 52/345 (15%), Positives = 115/345 (33%), Gaps = 7/345 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y LK + + +F++D+ + + S+ L + +P I
Sbjct: 2 KIINKYILDE-LKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q IP + ++ F +R SE V + G+SI +L P + +I IF + +
Sbjct: 61 LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIIFLQES 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + + + ++ + + I ++ +
Sbjct: 121 IIPRSFIKLKYVGAKIAYENPVFQLKEKTFI---DNLDEYSIYVDEVDSDGKAKNIIAFE 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGFQKF 240
+ K+K + A ++ + LK+ + T + + FQ
Sbjct: 178 KPEDKSKFPMVLTGEEAFWKDNSIILKESQFVSFDETGKKNLVGTFDEKRVVLTAYFQDL 237
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + II + K R + + + + + V + +I +SL R
Sbjct: 238 NIKIKDVEALSIIDLIKGLKKVEATEAIRYKIEIFRKLALVFSTVPLAVIGFCLSLGHHR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
++ + + F + I +G L P A P +
Sbjct: 298 ISKKYSFIL-AMIIIFAYIIFLNIGIVMATAGKLNPFIATWTPNV 341
>gi|317051997|ref|YP_004113113.1| permease YjgP/YjgQ family protein [Desulfurispirillum indicum S5]
gi|316947081|gb|ADU66557.1| permease YjgP/YjgQ family protein [Desulfurispirillum indicum S5]
Length = 356
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 56/359 (15%), Positives = 127/359 (35%), Gaps = 16/359 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L Y F+ YL + + L V+D+ + L + I+ + +
Sbjct: 2 TLLLYTFRQYLHIIFLAMAVLVALYGVVDIIGNLDDFAHLSSLQIAYYVGATLL---IGL 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P I L+ ++ + +E+ I + GIS+ ++ P +V L+ +
Sbjct: 59 YHLTPAIMLIATVMYITTIGVNNEMKIMLSAGISLKKISLPVLVFVSCAAGAHFLLGEQV 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L + + I + + N F ++ EN++ T
Sbjct: 119 FQHIKPEVDALQKYEARQQRPPSAIIAGNLWVRNYDGTSFARIRRFNMENNLLLGVEIYT 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEY-----QYGRIPIDKNSTTLNIPIKMDGFQ 238
+ ++ I AD + ++ L+ VV Q R+P + T +
Sbjct: 179 V-REGMIQEYVSADHGSLQEGRIHLEGVVIRNFMTQQVSRLPEHQVEFTGIMEST-KASI 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
K E+++SR I + + + ++ + L ++ ++L+A + +
Sbjct: 237 KPLEEYSSRELASDIAILREAGHPSHL----YVSELLRRVSYSLAIIVLSLVAIPLGVTG 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + V G+ + + + ++ + GK + P A I + L + + L
Sbjct: 293 ERKSGKIFSVTVGLLVAMVYFIVDSLAMTLGKGDAISPYIAPFIANGVF--LGLFVFLY 349
>gi|301168145|emb|CBW27733.1| putative permease [Bacteriovorax marinus SJ]
Length = 382
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 56/382 (14%), Positives = 126/382 (32%), Gaps = 36/382 (9%)
Query: 1 MPGILWRYFFKYYL---KTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT 57
M + RY ++ +L+F + ++ + + +I G + +A +
Sbjct: 1 MLKLTQRYLAVNFIAPFTMSLFFFVAFLLTFQLFRIIKIVISKGVEWSLVFELMGHIAIS 60
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
+P+ + P L I L+ SE+V R+ G++ +L PF++ ++ +G
Sbjct: 61 FIPMAV----PLSCLFATIYTLNKLSDDSEIVAMRSFGMTKSKLFLPFLISALFIGACIY 116
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ N + + + + I + G + + + A ++ +
Sbjct: 117 SLNNKVIPASKTQFKNTIIRLTSRGVLTDIKEGQFFTEVAG---VTLFADTVIDKGRKMY 173
Query: 178 DFTSITIDKKNKIIHRKDADLAII---YNDKV-------KLKK---VVEYQYGRIPIDK- 223
+ K N + A + N++ L V ++ ++K
Sbjct: 174 NVFIQQEGKGNLLEQVVTAKEGALIKIKNEEWSIPSVRLHLTDGTIVKRFKDTNKDLEKI 233
Query: 224 ----NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKM-------SFSNKSNIFHNYRAET 272
L ++ F + IKK S K + +
Sbjct: 234 LFKEYDFPLASGGAVNNFVTKDGMRTNAELRSEIKKATALAVKKKLSRKDRERSMAKTKL 293
Query: 273 QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG 332
+ + I PL+ LI S+ ++ R + + +F Y++ + SF + G
Sbjct: 294 ELWSRINTPLLCFVFILIGFSLGIKHGR-GKSKNSSGRALFVLLGYYSLFFLGVSFARKG 352
Query: 333 ILLPVAAALIPVILTISLSILI 354
I+ P I+ S+
Sbjct: 353 IVPAYVVVFAPTIILASIGAYF 374
>gi|189485654|ref|YP_001956595.1| permease YjgP/YjgQ family protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287613|dbj|BAG14134.1| permease YjgP/YjgQ family protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 384
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 53/386 (13%), Positives = 130/386 (33%), Gaps = 41/386 (10%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y K + L + ++F++D + S L A +P
Sbjct: 1 MIKKLHLYTIKESFGSFLL-GVAVFSILFILDYVFELVDLFLSKGVSFFLVLKLFAFALP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I++ IP L ++ + L+ +E+ ++ G++ L P ++ ++ F +
Sbjct: 60 NILRLAIPMSVLFGILIAYGKLSEDNEITAMKSSGVNYRTLSLPIIILVCIISSFLLFFN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ + ++L ++ K + + + + A K+ +N+ + +
Sbjct: 120 HFLSPAMNSNFVNLYREILTKKPLIKFTE----KTTIELGEYRLYANKVNRKNNTLYEVS 175
Query: 181 SITI---------------DKKNKIIH------RKDADLAI-----------IYNDKVKL 208
DKK+ + R A A IY+ +
Sbjct: 176 IYKFENKDDYCYGYNDEKSDKKSLFLQNNSKAWRIAASSAKVKSYQNGTQFFIYDGYWQK 235
Query: 209 KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNY 268
+ + S IP + ++ + + +S EI+K + + +I
Sbjct: 236 ANFSDIN-NMTHMTFKSYCFFIPSS-EVMKEQTLSMSEKSSPEILKTIKTCKEQDIPFTA 293
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
E +F+ + L ++ LIA + + + + I + + Y ++ +
Sbjct: 294 -NEIEFWIRWIYALAPISFVLIALPIGIMAGKDGKT-IGFGMSLSIILVYYMLLILALIL 351
Query: 329 GKSGILLPVAAALIPVILTISLSILI 354
+ + +P I + I +
Sbjct: 352 SEKEYVPANLIMWLPNITVTAAGICL 377
>gi|297170682|gb|ADI21706.1| hypothetical protein [uncultured Verrucomicrobiales bacterium
HF0130_14P10]
Length = 392
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 64/392 (16%), Positives = 129/392 (32%), Gaps = 46/392 (11%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY +LK L+ L+ + D + + A A VP +
Sbjct: 3 TLDRYILAEWLKVFGVSLIVLTGLLVLQDAADHAEDFRQ-GFAGAGEVATYYAWLVPSYL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P V + V L R +E+ + RA G+++ +L +V ++LL + +
Sbjct: 62 PWLLPIALFVSTLFVVATLRRNNEIAVLRACGVNVLRLSRSLLVTALLLSALSYGLNAKW 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L++ + D + M + F +K +
Sbjct: 122 SPLAMEKSQGLLEVLRGKSDHRNFVSNFDMSPPKTNRRWFF--RKFFAVTSSGAGVHLYS 179
Query: 184 IDKKNKIIHRKDADLA-IIYNDKVKLKK----------------------VVEYQYGRIP 220
+ R A+ A + + V E ++
Sbjct: 180 RTTGGRDSFRIRAEKAFRDEDGCWRFLNGRFIGFAGPRGLPVPSESGEGLVWEAEFAEQD 239
Query: 221 -----------IDKNSTTLNIP---IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
++K ++L +P + F ++ + S E+ + S +
Sbjct: 240 SSSDGFSSVPILNKQFSSLRLPDVREDPEPFLLMRKKPSELSVRELKTIVDASEVTEGNA 299
Query: 267 NYR-AETQF-YFLIVIPLMLVAMTLIAASVSL-EFSRSNQPRIIVAYGIFSGFMLYTIIT 323
R + + P L+A + +L RS + A G+ G Y T
Sbjct: 300 AVRPYAIRMGHAFWASPGCLLA-VALGIPFALVGNGRSAAAGVARALGLCVG--YYVART 356
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ S G++GI+ AA +PV+L +++ L
Sbjct: 357 MGDSLGEAGIIPIEWAAGVPVLLLGIVAVWFL 388
>gi|261749332|ref|YP_003257017.1| hypothetical protein BPLAN_247 [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497424|gb|ACX83874.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 361
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 60/366 (16%), Positives = 125/366 (34%), Gaps = 27/366 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL- 61
IL RY + L T ++ + I+ +IDL++ +++ SI + P
Sbjct: 2 KILDRYIIRNILVTFIFITILLQIISVIIDLSQRMHRLENNQG-SIKDALIYYY---PFW 57
Query: 62 ---IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+ P + I LN+ SE+ A GIS ++ P+++ + L+G+ ++
Sbjct: 58 SIWLAYTFSPISVFLSIIFFTSRLNKHSEINAILASGISFKRITIPYLISASLIGMGALI 117
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQK--SDIIPWMQISNPQQDIFIGAKKILPENHIW 176
+ K+ Q+ + + + + + +FI + + +I
Sbjct: 118 INYSFLPLANKMKNKFHYQYLLSSRYKNKYENNQTISTQISNNEYLFI--RNFSRKKNIG 175
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIP------IDKNSTTL 228
+D NK+I+ A Y L E + + K
Sbjct: 176 QDC-IYQKFNGNKLIYLLKAKNIFWYKKHRIYILSNYSETYLNKNKDIFFKGVHKIQNFS 234
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
P ++ + +E + I + SNI ++Y P +T
Sbjct: 235 MTPEELLPEEYIAETMTISELRKFIDREKKRGNSNINT---HLNEYYQRTSYPFSNFILT 291
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+ S+S S+ +P GI F+ I K + + + +P +
Sbjct: 292 LLGLSIS---SKKGEPAHNFIMGIILAFIYIFCTEISKVYSTKDYIPSYLSVWLPNGIFG 348
Query: 349 SLSILI 354
++ +
Sbjct: 349 MITFFL 354
>gi|319760186|ref|YP_004124124.1| putative permease [Candidatus Blochmannia vafer str. BVAF]
gi|318038900|gb|ADV33450.1| putative permease [Candidatus Blochmannia vafer str. BVAF]
Length = 363
Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 67/366 (18%), Positives = 130/366 (35%), Gaps = 18/366 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y K L + L + L +I L + E YSI +P
Sbjct: 1 MHKILDMYIKKSILSSISIVFLILISLSSIIRLIDGLRNF-EKKTYSIIEIFFCTFLSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ ++ L +ELVI + G+S +Q+ V S+ + I +++
Sbjct: 60 KDFELFLPISILLGGLLGLGVLEIRNELVIMKVFGLSYFQITFSVVKVSVFILILHIMLN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ + + + N + + W I + + I + +P +
Sbjct: 120 EWLLPGSQYMLYIYQGHKEYNSYFFPEKNKNLW--IIDNNGFVCI---EYMPTTNNVFGV 174
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-------GRIPIDKNSTTLNIPI 232
+ K KI A N + +E + R T+ P
Sbjct: 175 NLYYLTKDKKIEKIIYFKDATYINKSWFVSSAIELNFSDKTHIVNRTVFHYKWNTILTPD 234
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + + IK + N+++ + E F+ I+ PL + M +I+
Sbjct: 235 LLSIITTNPRVLSVSKLFSCIKYFNGINQNSQY----YELIFWNKILSPLTGMIMLIISL 290
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S + + +G GF+ Y + F + P+ ++IPV+L I ++I
Sbjct: 291 LYSFGPFSKKKIGFRLFFGSIIGFLFYVLHQFFDVFCVMHNIYPLVGSIIPVLLFIVINI 350
Query: 353 LILLQK 358
+I+ K
Sbjct: 351 VIVFYK 356
>gi|332535155|ref|ZP_08410964.1| putative permease [Pseudoalteromonas haloplanktis ANT/505]
gi|332035425|gb|EGI71924.1| putative permease [Pseudoalteromonas haloplanktis ANT/505]
Length = 370
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 56/365 (15%), Positives = 132/365 (36%), Gaps = 26/365 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+++RY LK+ + L M + L I E + + A ++P +
Sbjct: 2 LIFRYLTAEVLKSQVAVFLTLMTIFLSQKLVGILGDASE-GSIPAKLVLSMIALKLPQLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + I+ + + SE+ + +A G+S W ++ ++ S+ L I + I
Sbjct: 61 SLILPLSIFLGIILAYSRIYADSEMTVLKACGVSEWYVVRVTLISSVGLAILAAALTMYI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L +Q K + + + N + +FI I
Sbjct: 121 APWASEQEYQLKEQAKADAGLSALRAGRFQETGNEKAVVFIH--NIEKGGKELNKVFVAQ 178
Query: 184 I--DKKNKIIHRKDAD-----LAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIK 233
+ +K + A+ A+ ++ L Y+ N T ++ I+
Sbjct: 179 LPDSEKGNLARLVYAEQGVVVEAVNGEQQLVLTDGKRYETDGTTPALNLTEFDGYSVQIR 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + +++ + + Q+ + + IPL + +TL+A
Sbjct: 239 EQEIEHQRRKLEAVPTNQLL----------AINTPESIAQWQWRLAIPLSIPLLTLLAVP 288
Query: 294 VSLEFSRSNQPRIIV-AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+S+ R + +V A ++ G + ++ K + G + P + + +
Sbjct: 289 LSVVNPRQGKFAKLVPAISLYLG--YFILLNAAKFAVEDGKIPPSIGLWWIHLSALFIGG 346
Query: 353 LILLQ 357
L++++
Sbjct: 347 LLIIK 351
>gi|77919518|ref|YP_357333.1| hypothetical protein Pcar_1922 [Pelobacter carbinolicus DSM 2380]
gi|77545601|gb|ABA89163.1| conserved hypothetical membrane protein [Pelobacter carbinolicus
DSM 2380]
Length = 418
Score = 116 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 53/367 (14%), Positives = 138/367 (37%), Gaps = 29/367 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFV---IDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
RY + L L L +++ + ++L E+ G + A L P +
Sbjct: 35 RYLLRETLVPMLLGLAVFTLVLLLGRILNLVELVINKGVPLVDVLLLLAYLL----PTFL 90
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P L+ + F ++ E++ +A G+ + QL P V +L+ + T I
Sbjct: 91 VLTLPLSFLLGVMAGFGRMSADREILALKACGVGLRQLTAPIVGLGLLVSLATAATTIAI 150
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-QDIFIGAKKILPENHIWEDFTSI 182
+ DL ++ + +++I QI N + + I + A + + + I
Sbjct: 151 KPA----SEDLFREKLFHIASSRANIGIQAQIFNDEFEGIILYANDVDERSGRMQGV-FI 205
Query: 183 TIDKKNKIIHRKDADLAIIYNDK------VKLKKVV----EYQYGRIPIDKNSTTLNIPI 232
+ ++ + + A+ I++++ + L+ + G T ++ +
Sbjct: 206 SDERDDTLSSIILANEGRIFSNQENLTLTLHLENGTIHRQRRETGSGFQVIEFTRYDLNL 265
Query: 233 KMDGFQKFSEQF----ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ ++Q + + E+ + + + +F++ + +P++ +
Sbjct: 266 DLGQTSMSADQPRKNKKTMTLGELYQAIRPDAATPPSKKRELLAEFHWRLAVPVIPLLFA 325
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+ + ++ RS + A G+ Y ++++ + L + P + +
Sbjct: 326 LLGVPLGIQPVRSGR-GSGFAAGLLVFLAYYVLLSLAGTLVVDAGLPGLIM-WGPNSIFL 383
Query: 349 SLSILIL 355
SI++L
Sbjct: 384 LASIVVL 390
>gi|224368911|ref|YP_002603073.1| predicted permease family protein [Desulfobacterium autotrophicum
HRM2]
gi|223691628|gb|ACN14911.1| predicted permease family protein [Desulfobacterium autotrophicum
HRM2]
Length = 391
Score = 116 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 66/374 (17%), Positives = 145/374 (38%), Gaps = 29/374 (7%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + RY F+ + + + + + EI N + N I +L A +P
Sbjct: 1 MMTTINRYIFRELIPPFAISAVFLTSIFIMTRIPEITNMVVNY-NTGIFSVLLLIACTLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ IP ++ ++ F ++ +E++ + GI+I++LL P ++ +L T+ +
Sbjct: 60 RFMEFTIPMSVMISVLLTFMRMSGDNEIIALKGGGITIYRLLPPVLIFCLLGTAVTLWIT 119
Query: 121 NPIATSGEKIGIDL-IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
G L I + N + SD ++ +D+ I + + D
Sbjct: 120 IIGVPLGNMSFKTLGIAMARSNLNVALSDGTF----NSSFKDVMIYISSMDVKTKKLRDL 175
Query: 180 TSITIDKKNKIIHRKD---ADLAIIYNDKV------KLKKVVEYQYGRIPIDKNST---T 227
+ + R A ++ D V +L Q N+ T
Sbjct: 176 ----FIEDRRTKDRVTISVAPEGVLVKDAVTGSYALRLYGGSVNQVDLKSRSINNVGFDT 231
Query: 228 LNIPIKMDGFQKFS----EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+I + QK S + F + E+ + +++ + A +F+ IP+
Sbjct: 232 YDINLDFAQVQKSSKVGNKDFDEMTLNELRAFLKKTSEKPELNA--ALMEFHEKFSIPIA 289
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+AM ++A ++ L+ + S++ G+F + Y ++ S G++G+ P+ +P
Sbjct: 290 CIAMGILAMALGLQAA-SSRKTAGFGLGMFFFLLYYLLLAAGWSAGENGLYPPLIGMWMP 348
Query: 344 VILTISLSILILLQ 357
I+ + +L +
Sbjct: 349 DIVMGGIGSFLLYR 362
>gi|254669827|emb|CBA04201.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
Length = 210
Score = 116 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 27/194 (13%), Positives = 74/194 (38%), Gaps = 11/194 (5%)
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPID-----KNST 226
+H + KN++ +AD A++ + +LK + G ++ + +
Sbjct: 19 DHTLLGIKIWARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSIAAEENW 78
Query: 227 TLNIPIKM-DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+++ + D +Q + I+ + +++ + ++ +V P
Sbjct: 79 PISVKRNLMDVLLVKPDQMSVGELTTYIRHLQNNSQ----NTRIYAIAWWRKLVYPAAAW 134
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
M L+A + + + +R + + GI G + + + + P A +P I
Sbjct: 135 VMALVAFAFTPQTTRHGNMGLKLFGGICLGLLFHLAGRFFGFTSQLYGIPPFLAGALPTI 194
Query: 346 LTISLSILILLQKE 359
L++ ++ ++E
Sbjct: 195 AFALLAVWLIRKQE 208
>gi|330752461|emb|CBL87411.1| predicted permease YjgP/YjgQ [uncultured Flavobacteria bacterium]
Length = 357
Score = 116 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 63/362 (17%), Positives = 123/362 (33%), Gaps = 18/362 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I Y K YL T LL + + ++L E +++ E A
Sbjct: 2 KIFDWYILKRYLLTFFLMLLLFIPIGITVNLAEKIDRILEN-KVPFDEVAAYYFDFTIYF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P + I L +E++ + GIS ++ L P+ +G ++ I + +
Sbjct: 61 ANLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGISFFRFLRPYFIGGTVIAIVALFLGMY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A K + ++ N +S I Q N + +I + +FT
Sbjct: 121 WAPKASKGYNEFTYKYLSNKKAVQSQYIY--QQINDDE--YIYVSNFDSNSMRGNNFTLE 176
Query: 183 TIDKKNKIIHRKDADLAII--YNDKVKLKK------VVEYQYGRIPIDKNSTTLNIPIKM 234
D NK+ ++ A + +L ++ ++ + +
Sbjct: 177 HFD-GNKLEYKIHASAIRFIEKDSNYRLSNYYLRYIGKDHDSIIFKRRIDTLLGFDLLDL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ +E + IK+ SNI R + Y +P+ + +T+IA +V
Sbjct: 236 TPPKYVAETLTVHELSDFIKREEARGSSNI---NRYKVVQYKKWSLPVSVYILTIIAVAV 292
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S R + +A+GI + + + PV A P + L+I +
Sbjct: 293 S-SIKRRGGMGVNLAFGIVIAMVYVFFDKVFGVMAEQSDFPPVVAVWFPNFIFGILAIYL 351
Query: 355 LL 356
L
Sbjct: 352 LF 353
>gi|77361338|ref|YP_340913.1| hypothetical protein PSHAa2422 [Pseudoalteromonas haloplanktis
TAC125]
gi|76876249|emb|CAI87471.1| putative membrane protein [Pseudoalteromonas haloplanktis TAC125]
Length = 370
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 58/365 (15%), Positives = 133/365 (36%), Gaps = 26/365 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+++RY LK+ + L M + L I E + + A ++P +
Sbjct: 2 LIFRYLTAEVLKSQVAVFLTLMTIFLSQKLVSILGDASE-GSIPAKLVLSMIALKLPQLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + I+ + + SE+ + +A G+S W ++ ++ S+ L I + +
Sbjct: 61 SLILPLSIFLGIILAYSRIYADSEMTVLKACGVSEWYVVRVTLISSVGLAILAAALTMHV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L +Q K + + Q N + +FI I
Sbjct: 121 APWASEQEYQLKEQAKADAGLSALRAGRFQQTGNEKAVVFIH--NIENGGKELNKVFVAQ 178
Query: 184 I--DKKNKIIHRKDAD-----LAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIK 233
+ +K+ + A+ A ++ L Y+ + N T ++ I+
Sbjct: 179 LPDSEKDNLARLVYAEQGVVIEAQNGEQQLVLSDGKRYETDGLTPALNLTEFDGYSVQIR 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + +++ + A Q+ + I IPL + +TL+A
Sbjct: 239 EQEIEHQRRKLEAIPTNQLLAL----------NTPEATAQWQWRIAIPLSIPLLTLLAVP 288
Query: 294 VSLEFSRSNQPRIIV-AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+S+ R + +V A ++ G + ++ K + G + P + + +
Sbjct: 289 LSVVNPRQGKFAKLVPAISLYLG--YFILLNAAKFAVEDGKIPPSIGLWWIHLSALFIGG 346
Query: 353 LILLQ 357
L++++
Sbjct: 347 LLIIK 351
>gi|330752041|emb|CBL80552.1| predicted permease YjgP/YjgQ [uncultured Flavobacteria bacterium]
Length = 374
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 43/371 (11%), Positives = 118/371 (31%), Gaps = 29/371 (7%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y + ++ + ++ + + V D++E + + +
Sbjct: 4 LDWYILRKFMGSFFLTMILILAIAIVFDISEKIDDFQNGATMN-EIVFDYYINFIAFYGN 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I + I + SE+V G S + L P+ +G+ ++ + ++ + + +
Sbjct: 63 LFSALILFISTIWFTSRITSNSEVVAVLTSGTSFNRFLRPYFIGATIICLLSLTLNHLLV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
I +++ + + + + P ++ + + FT
Sbjct: 123 PHTNIKRIAFEEKYITGVSRPINQKVH--RQVLPGH--YVYFETYSGQRQSGYQFTYEVF 178
Query: 185 DKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM----DGFQ 238
D ++ + AD + + +L + + T + + +
Sbjct: 179 DSH-RLASKLSADFVRLDTATGQWRLDNFRLRTLDSLNNEVILTGRRMDTTLAFTSEQIA 237
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
A+ + E+ + + + + + + P+ L+A S++ +
Sbjct: 238 PKLSSIATMNSNELSRFIEQEEVTGNENIASYQMEMQRRTSYPVSSYVFVLLAVSLATQK 297
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL----------------LPVAAALI 342
R I +A G+ + + I ++F +G+L A I
Sbjct: 298 -RRGGLGINIAIGLILCAVYVFAMQISQTFAATGLLSIDKGLGSALLWVGIQPAEFAIWI 356
Query: 343 PVILTISLSIL 353
P +L ++I
Sbjct: 357 PNLLFAGIAIW 367
>gi|313206715|ref|YP_004045892.1| permease yjgp/yjgq family protein [Riemerella anatipestifer DSM
15868]
gi|312446031|gb|ADQ82386.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer DSM
15868]
gi|315023785|gb|EFT36787.1| hypothetical protein RAYM_00180 [Riemerella anatipestifer RA-YM]
gi|325335845|gb|ADZ12119.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer RA-GD]
Length = 364
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 59/367 (16%), Positives = 139/367 (37%), Gaps = 18/367 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAV-LAATRVPL 61
I+ Y K +L T ++ L+ I+V V+D+ + E Y++ + +
Sbjct: 2 KIIDAYIIKKFLGTLVFMLVLLSIIVIVVDIQAKAPNI-EKSGYTVGDFLLHFYPFWMIY 60
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I + + + I + +E+V + G S + P+ + ++ + +F +++ +
Sbjct: 61 LILTFMSILVFISVIYFSSRMADNTEIVAIVSSGASFHRFARPYFMVAVGIALFMLMLNH 120
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ-ISNPQQDIFIGAKKILPENHIWEDFT 180
+L+ + +++ + + +P + +FIG + D+
Sbjct: 121 FALPWANVKKNELMVFTESQVRQEEKNRSVAISAQMSPTEYVFIG--SYHRKEARGSDYL 178
Query: 181 SITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDKNSTTLNI-------P 231
DK NK+IH+ D + E + G+ +K S P
Sbjct: 179 YQKFDKNNKLIHQIRGDYVSWDEKKQAFSITSFYEKKAGKNETEKLSNGTQTYQSFGYPP 238
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
++ + E + + I + NI + + +P+ ++ +T++
Sbjct: 239 EELFPDELLGENKTTPELVKFINREKIKGNGNINT---YLNELHARTSMPVSIIILTILG 295
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+++ E R + +A GI F+ +K S IL P A +P + L+
Sbjct: 296 LALASEKKR-GGIGVNLAVGIALAFVFIFSFEALKVVSSSKILTPFVAMWMPNFVFAPLA 354
Query: 352 ILILLQK 358
+L+ ++
Sbjct: 355 LLLYFRR 361
>gi|189220202|ref|YP_001940842.1| permease [Methylacidiphilum infernorum V4]
gi|189187060|gb|ACD84245.1| Predicted permease [Methylacidiphilum infernorum V4]
Length = 405
Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats.
Identities = 54/364 (14%), Positives = 120/364 (32%), Gaps = 27/364 (7%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQMGELP---NYSISRGAVLAATRVPLIIQQIIPF 69
+L+ L+ IL F + + + +L + L + +P ++ +P+
Sbjct: 42 FLELFKNSLITTSILTFFLVIANAFRDLSDLLVNNEVPLWISVKLLVSLIPFVLTFTLPW 101
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
LV I++F +++ EL ++ GIS+ ++ P + ++L + + + I
Sbjct: 102 GLLVAVILLFGKMSQDRELTALKSAGISLGAIMAPVIWFALLYSVLSFAINAYIGPKSRH 161
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
++ + + + + Q ED D +
Sbjct: 162 AFKEIF-----SDVMLHNPLSFFKSNKTIDQFDGFRLYATNRIGARLEDVYIWETDADLR 216
Query: 190 IIHRKDADLAIIYND------KVKLKKVVEYQYGRIP------IDKNSTTLNIPIKMDGF 237
+ A A I D + L + + + S +P ++
Sbjct: 217 PLRSIRASEAEIEPDLAHQRILLTLWNARQEERNVSDPQNVKLVMPGSRATQLPYEISLA 276
Query: 238 QKFSE-----QFASRSFYEIIKKMSFSNKSNIFHN-YRAETQFYFLIVIPLMLVAMTLIA 291
Q F + EI + + ++ N T+F + L L+
Sbjct: 277 QLFDRLTVRKSIGLSTLDEIGRSIVAADLFGFTSNPTPVLTEFQKRLAFSLSCFTFVLVG 336
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
A ++++ R I VA + Y I+ + ++ L P +P I+ SL
Sbjct: 337 APLAIQVQRKE-TSIGVALSLLIVLSYYVIVLLAEALKAKTNLFPELIIWLPNIIFQSLG 395
Query: 352 ILIL 355
++
Sbjct: 396 FWLI 399
>gi|223938399|ref|ZP_03630293.1| permease YjgP/YjgQ family protein [bacterium Ellin514]
gi|223892968|gb|EEF59435.1| permease YjgP/YjgQ family protein [bacterium Ellin514]
Length = 383
Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats.
Identities = 54/387 (13%), Positives = 127/387 (32%), Gaps = 34/387 (8%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y + L T + + ++ + + + + ++ +P +
Sbjct: 2 KILHTYLIRQVLATLMMTVAVFTFVLLLGNGLKEILVLIINRQATLGGVIQAFGLLIPFV 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L ++VF + EL ++ G+S+ L+ P + S++L + +
Sbjct: 62 LVFALPMGMLTAALLVFGRFSADQELTAVKSSGVSLLSLITPILGLSLVLCGVSAAINME 121
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA +DL + +++ P I++GA + D
Sbjct: 122 IAPRCRIAYLDLRDEMVGKVAGAALPDSIFVKDF-PGFLIYVGA----SDGKNLTDIHIC 176
Query: 183 TIDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIP------IDKNSTTLNIPI 232
+D+ +K+ DA ++ ++L + + ++ +++
Sbjct: 177 QLDENDKVKTMTDAPKGLLQRSGNQTSLELFDARIFDVQSGSWAYPGIVSQDLSSIKTNS 236
Query: 233 K--------------MDGFQKFSEQFASR----SFYEIIKKMSFSNKSNIFHNYRAETQF 274
+ Q +FA S E+ ++ Q
Sbjct: 237 TSKNIHIGDMTFRQLQNELQVVENEFAVPEKAGSKAELQQRRDILANKKKDVTMPIRVQM 296
Query: 275 YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
+ + TLI + ++ R + +A + + Y+ I + +SF L
Sbjct: 297 HRQVAFSFACFGFTLIGIPLGIQAHRRE-TNVGIAMSLALVLVYYSFIILGQSFEGRPYL 355
Query: 335 LPVAAALIPVILTISLSILILLQKEDG 361
P IP L ++ ++L + G
Sbjct: 356 APHLILWIPNFLFQAIGAVMLWRANRG 382
>gi|281357796|ref|ZP_06244282.1| permease YjgP/YjgQ family protein [Victivallis vadensis ATCC
BAA-548]
gi|281315743|gb|EFA99770.1| permease YjgP/YjgQ family protein [Victivallis vadensis ATCC
BAA-548]
Length = 371
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 57/372 (15%), Positives = 127/372 (34%), Gaps = 29/372 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y + +L + + +L ++ + + + S +P+I
Sbjct: 2 KILNWYVTRGFLLAFFMAIGILTFGMTGANLVKVLDYVSQ--GISFFTFFEFTLYILPII 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P+ +V ++VF L+ SE+ RA G+SI Q+++P ++ + L +F + +
Sbjct: 60 LTFTVPWAVMVAVMLVFGRLSADSEITAMRACGVSILQIVSPILIITFFLMLFCLYLQVE 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ L+Q N + ++ N I E+ I +
Sbjct: 120 VGPPLLGKSRTLMQTAAINQPLAIFEPGKQIEFEN----TIIYIDDKEGEDGI-KGVQIY 174
Query: 183 TIDKKNKIIHRKDADLAIIYNDK------VKLKKVVEYQYGRIPIDKNSTTLNIPI---- 232
T+ + A+ + DK V+L + + +P
Sbjct: 175 TLSDPQTVAQDISAERGKLLVDKEKQLLIVRLFDCLVVDKKGAAEQQQDGDAGMPTRFFT 234
Query: 233 ----------KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
K ++ S + +++ K+ + + E + I L
Sbjct: 235 QQLEFSFNYGKQANERRISTKAKYMKLTDLMGKIRLTKQLE-RDTTELEVELNQRIAFAL 293
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+A L+ +++ SR + I +G + + I + +S L P +
Sbjct: 294 SPIAFLLLGLPLAIRTSRRETSVGLFLSVILAG-VFFLSIILCESLSSFPHLYPQYLLWL 352
Query: 343 PVILTISLSILI 354
P I+ L ++
Sbjct: 353 PNIIFQILGAVM 364
>gi|194426241|ref|ZP_03058796.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
gi|194415549|gb|EDX31816.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
gi|195183222|dbj|BAG66767.1| putative permease [Escherichia coli O111:H-]
Length = 285
Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats.
Identities = 41/289 (14%), Positives = 99/289 (34%), Gaps = 18/289 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY ++ + L +L + + Y ++ ++ +P
Sbjct: 2 NVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSP-GGYRWTQAVLVVLMTLPRT 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++ PFI L+ IV L++ SEL R+ G SI+++ +V IL + +
Sbjct: 61 LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120
Query: 123 IATSGEKIGIDLIQQWKDNG-DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+A+ ++ + + G D + + W + + + F+ K + +
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWAR----RGNEFVTVKSLNEQGQPV-GVEI 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-VKLKKV--VEYQYGRIPID----KNSTTLNIPIKM 234
+ A A I +DK L V ++ G+ ++ + + +
Sbjct: 176 FHYRDDLSLESYIYARSATIEDDKTWILHGVNHKKWLNGKETLEILDNLAWQSTFTSMNL 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ F+ R I + + + + + + P+
Sbjct: 236 EELSMPGNSFSVRQLNHYINYLQETGQ----PSSEYRLALWEKLGHPIF 280
>gi|281356604|ref|ZP_06243095.1| permease YjgP/YjgQ family protein [Victivallis vadensis ATCC
BAA-548]
gi|281316731|gb|EFB00754.1| permease YjgP/YjgQ family protein [Victivallis vadensis ATCC
BAA-548]
Length = 419
Score = 115 bits (289), Expect = 9e-24, Method: Composition-based stats.
Identities = 60/421 (14%), Positives = 122/421 (28%), Gaps = 69/421 (16%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISR--GAVLAATR 58
MP L Y + +L LL +IL + D+ + + S +
Sbjct: 1 MPK-LDGYILREFLIKYSVLLLVFVILFILSDV---YRDISDFLEAKASYRSILQYLGYK 56
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P ++ I+P L+ + + E+ RA G+S+++ V +++ +
Sbjct: 57 LPGNVRFILPISMLLGCMWTMATFGKNMEITAMRASGVSLFRCGGSIFVVGLIVTAVNIY 116
Query: 119 VINPIATSGEKIGIDLIQQWKDN--------GDKQKSDIIPWM----------------- 153
+ E+ ++ + D + W+
Sbjct: 117 FNEALVPYTERRAEEIRSEVADGRKYVQNLLTYRSTDQQRHWLFKTFTTDEAQQNVTVKT 176
Query: 154 -QISNPQQDIFIGAK-----KILPENHIWEDFTSITIDKKNKIIH-RKD---------AD 197
DI +GA ++ + + + + ++ + RK+ A+
Sbjct: 177 FWTDGMIDDIVLGAGDAEFDALIRQMFRLKADRILALSREERAKEIRKELKGRKVDFFAN 236
Query: 198 LAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKK 255
K Y R K + D S F + E
Sbjct: 237 RVSYDAGKKAWTFSDGNFTSYDRNDETKFEASRGTSTMHDPQPYKSIVFNEKEIPEAPDD 296
Query: 256 MSFSNKSN-------IFHNYR------------AETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S K I+ R T FY+ + P + ++
Sbjct: 297 IMNSIKEKDDLPTLVIWDLVRRNDNMPDRVYSIYMTVFYYRLAFPWACFLAVFLGIPLAT 356
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ R+ + + + + + + GK GIL PV A L P + I +L
Sbjct: 357 KNERTGSL-MAIITAVGIIIVYIVVAQVFLVLGKGGILNPVFAGLAPTLAFIGCGAYRIL 415
Query: 357 Q 357
Sbjct: 416 H 416
>gi|213962435|ref|ZP_03390697.1| permease YjgP/YjgQ family protein [Capnocytophaga sputigena Capno]
gi|213954761|gb|EEB66081.1| permease YjgP/YjgQ family protein [Capnocytophaga sputigena Capno]
Length = 358
Score = 115 bits (289), Expect = 9e-24, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 136/360 (37%), Gaps = 15/360 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K YL T ++ + + ++DL+E ++M E ++ + +
Sbjct: 2 KILDWYILKRYLLTFFIMIVLFIPIGIIVDLSEKVDKMIER-KAPMNEILWYYLSFIVYF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P + + I L +E++ ++ G+S + L P++VG+ ++ + +
Sbjct: 61 ANILFPILLFLSIIWFTSKLANNTEIIAIQSSGVSYMRFLRPYIVGASIISVIVFFMGMF 120
Query: 123 IATSGEKIGIDLIQQW-KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + D ++ + + + SD+ ++ ++ + +F+
Sbjct: 121 IVPAASTVYNDFWNKYIRSSKVESVSDLYNQFSDND-----YLYVSSFNYQEQKGYNFSV 175
Query: 182 ITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDG 236
D K+ + +A+ + +L + + G + ++ K D
Sbjct: 176 EHFDGI-KMKEKINAETIQWIDSTKTYRLTNYSKRKIGEGDDILVKRDQLDTIFNFKPDD 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+++ +E+ K + + Y +TLI +VS
Sbjct: 235 LMPMEYTAENKNLFELNKFIEREKMKGSPNLNMYLLVKYRRWGAISTAFILTLIGVAVSS 294
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK-SGILLPVAAALIPVILTISLSILIL 355
R I + G+ GF + + + SG L P+ A ++P ++ ++L+IL+L
Sbjct: 295 VKKR-GGMGINLMVGVVVGFSFVFFDRVFGTLAQTSGGLSPLMAVVLPNLIFLTLAILLL 353
>gi|78212778|ref|YP_381557.1| permease [Synechococcus sp. CC9605]
gi|78197237|gb|ABB35002.1| possible permease [Synechococcus sp. CC9605]
Length = 386
Score = 115 bits (289), Expect = 9e-24, Method: Composition-based stats.
Identities = 48/331 (14%), Positives = 113/331 (34%), Gaps = 22/331 (6%)
Query: 33 LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
+ E+ QM + N I+ + +P + +P TL+ ++ VF L+ SEL R
Sbjct: 45 MFELVRQMVDK-NLPITIAVQVLLFSIPRWLAFSVPIGTLMASLFVFTRLSANSELTALR 103
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
++GI+ ++++ + S+++ +FT ++ + + ++ +++ ++
Sbjct: 104 SLGITTVRMISAALALSMVMTLFTFVLNDVVVPRSQRYAEVTLKRSLGRSLASETGRDII 163
Query: 153 M--------QISNPQQDIFIGAKKILP-ENHIWEDFTSITIDKKNKIIHRKDADLAIIYN 203
++ D T + + AD AI
Sbjct: 164 YPRFGTRFDSDGEEDGKGLNQLFYSRKFQDGEMADVTVLDFTRSG-FTQMLRADRAIWNE 222
Query: 204 DK--VKLKKVVEYQYGR----IPIDKNSTTLNI---PIKMDGFQKFSEQFASRSFYEIIK 254
D+ D + + P+++ G +K + + +
Sbjct: 223 DQASWDFLDGQILTLAANGSSTKADFDRYVYPLGSGPVRLAGIEKDAVNMTVAEALQAQR 282
Query: 255 KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
+ +I + + +P+ + L A++ + S + +
Sbjct: 283 LYEEAG--SIKEARKIRVRIQEKFTVPMACLVFGLFGATLGAQPSYRSSRSFSFVLTLGI 340
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ Y I S G G L P+ AA +PV+
Sbjct: 341 IAVYYVIGFSFSSLGVKGTLPPILAAWLPVM 371
>gi|34763639|ref|ZP_00144568.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|294785395|ref|ZP_06750683.1| permease, YjgP/YjgQ family [Fusobacterium sp. 3_1_27]
gi|27886692|gb|EAA23836.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|294487109|gb|EFG34471.1| permease, YjgP/YjgQ family [Fusobacterium sp. 3_1_27]
Length = 359
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 49/348 (14%), Positives = 116/348 (33%), Gaps = 13/348 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y LK + + +F++D+ + + S+ L + +P I
Sbjct: 2 KIINKYILDE-LKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q IP + ++ F +R SE V + G+SI +L P + +I IF + +
Sbjct: 61 LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIIFLQES 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + + + ++ + + I K+ +
Sbjct: 121 IIPRSFIKLKYVGAKIAYENPVFQLKEKTFI---DNLDEYSIYVDKVSSDGKAKNIIAFE 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKMDGF 237
+ KNK + A + + LK+ + + + +
Sbjct: 178 KPEDKNKFPMVLTGEEAFWKDSAIILKESQFVSFDETGKKNLVGTFDEKKVVLTAYFQDL 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S ++IK + + + + + + + + + + + +I +SL
Sbjct: 238 NIKIKDVEALSITDLIKGIKKVEATEVI---KYKIEIFRKLALVFSTIPLAVIGFCLSLG 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
R ++ + + F + I +G L P A P +
Sbjct: 295 HHRISKKYSFIL-AMIIVFAYIIFLNIGIVMATAGKLNPFIATWTPNV 341
>gi|237741965|ref|ZP_04572446.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
gi|256845305|ref|ZP_05550763.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
gi|229429613|gb|EEO39825.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
gi|256718864|gb|EEU32419.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
Length = 359
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/351 (15%), Positives = 118/351 (33%), Gaps = 19/351 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y LK + + +F++D+ + + S+ L + +P I
Sbjct: 2 KIINKYILDE-LKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q IP + ++ F +R SE V + G+SI +L P + +I IF + +
Sbjct: 61 LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIIFLQES 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + + + ++ + + I K+ +
Sbjct: 121 IIPRSFIKLKYVGAKIAYENPVFQLKEKTFI---DNLDEYSIYVDKVSSDGKAKNIIAFE 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-------PIDKNSTTLNIPIK-M 234
+ KNK + A + + +K+ + D+ L + +
Sbjct: 178 KPEDKNKFPMVLTGEEAFWKDSAIIVKESQFVSFDETGKKNLIGTFDEKKVVLTAYFQDL 237
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ K E + + IKK+ + + + + + + + V + +I +
Sbjct: 238 NIKIKDVEALSITDLIKGIKKIEATE------VIKYKIEIFRKLALVFSTVPLAVIGFCL 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
SL R ++ + + F + I +G L P A P +
Sbjct: 292 SLGHHRISKKYSFIL-AMIIIFAYIIFLNIGIVMASAGKLNPFIATWTPNV 341
>gi|58040479|ref|YP_192443.1| hypothetical protein GOX2051 [Gluconobacter oxydans 621H]
gi|58002893|gb|AAW61787.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
Length = 380
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/339 (14%), Positives = 106/339 (31%), Gaps = 14/339 (4%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ L L + L+ ++ L E + + A +P + I+P
Sbjct: 28 LNRALLGRFLLCGAVLVSLLEILALLEKTTPILNR-HLGFRGILTFAFLHLPALSIDILP 86
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGIS---IWQLLNPFVVGSILLGIFTVLVINPIAT 125
+V + + + +SE+ RA G+S +++LL P V+ + + G + P
Sbjct: 87 LAFMVGALFLLTQMTLSSEISALRAAGLSTPALYRLLLPAVLIAGIGGTCAQYWLVPACE 146
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ + D Q D I W + + +I D T D
Sbjct: 147 NALTTWWN-RTDPLAGQDGQPEDNILWFR----AGPTLVRIGQIAQGGTFLRDVTIYHRD 201
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP----IDKNSTTLNIPIKMDGFQKFS 241
+ + ++ + + + + K +T IP S
Sbjct: 202 NTGLLTGTEHTNVLTYRDGQWHPDGAQDLSLSDDKSYVNVTKGDSTFVIPATPSVIMTLS 261
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ A+ + + + +++P+ + M L+ V R+
Sbjct: 262 QNGATV-TPAQVSAILHKGAPASLPRATYRMALFSGMILPVEIAVMLLLTLPVIYIPPRA 320
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ Y + +G + ++ + G +G L A
Sbjct: 321 GLRNPLPVYVLAAGMGFVILQGMISALGNAGTLPAPLAV 359
>gi|315223961|ref|ZP_07865805.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea F0287]
gi|314946065|gb|EFS98070.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea F0287]
Length = 358
Score = 114 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 137/360 (38%), Gaps = 15/360 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K YL T ++ + + ++DL+E ++M + ++ + +
Sbjct: 2 KILDWYILKRYLLTFFMMIILFIPIGIIVDLSEKVDKMIQK-GAPMNEILWYYLSFIVYF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P + + I L +E++ ++ G+S + L P++VG+ ++ + +
Sbjct: 61 ANILFPILLFLSIIWFTSKLANNTEIIAIQSSGVSYMRFLRPYIVGASIISVIVFFMGMF 120
Query: 123 IATSGEKIGIDLIQQW-KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + D ++ + + + SD+ ++ ++ ++ +F+
Sbjct: 121 IVPAASTVYNDFWNKYIRSSKVESVSDLYNQFSDND-----YLYVSSFNYQDKRGYNFSV 175
Query: 182 ITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDG 236
D K+ + +A+ + +L + + G + ++ K D
Sbjct: 176 EHFDGI-KMTEKINAETIQWIDSTKTYRLTNYSKRKIGEGDDVIVKRDQLDTIFNFKPDD 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+++ +E+ K + + Y +TLI +VS
Sbjct: 235 LMPMEYTAENKNLFELNKFIEREKMKGSPNLNMYLLVKYRRWGAISTAFILTLIGVAVSS 294
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK-SGILLPVAAALIPVILTISLSILIL 355
R I + G+ GF + + + SG L P+ A L+P ++ ++L+IL+L
Sbjct: 295 VKKR-GGMGINLMVGVVVGFSFVFFDRVFGTLAQSSGGLSPLMAVLLPNLIFLTLAILLL 353
>gi|262341091|ref|YP_003283946.1| putative YjgP/YjgQ family permease [Blattabacterium sp. (Blattella
germanica) str. Bge]
gi|262272428|gb|ACY40336.1| putative YjgP/YjgQ family permease [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 381
Score = 114 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 59/379 (15%), Positives = 129/379 (34%), Gaps = 35/379 (9%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR 58
M I L Y + ++ + + +++ + +
Sbjct: 1 MIPIKKLDLYMIRLFITPFFIIFSTIFAVFMIQFFWSQIDELTGKNINILIIIKFVFYFG 60
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+ II + P L+ +I+ F +L+ EL+ ++ GIS+++++ P + + +L I
Sbjct: 61 I-SIIPLVTPISLLLTSIITFGHLSENQELIAIKSSGISLFRVMKPILGITCILSIGLYF 119
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ K L + K ++ N D FI + +N +
Sbjct: 120 FSDLAIPKAIKQAKKLGYKISSTHPSFKLKEGIFV---NLLPDFFIKIDR--KKNQQLHN 174
Query: 179 FTSITIDKKNKIIHRKDADLAIIYND-------KVKLKKVVEYQYGRIPIDKNSTTLNIP 231
DK N +++ + + + KL + Y + +
Sbjct: 175 IFIFFYDK-NLLVNTILSQKGFFIPNKDQSEFIQFKLINGILYSENTNKEQSSYQIVQFD 233
Query: 232 IKMDGFQ-------KFSEQFASRSFYEIIKKMSFSNKSNIFHNY-------RAETQFYFL 277
+ FQ K + + S + +I+K++ K H + + +
Sbjct: 234 TLIQNFQIPFYEEIKNLDDYESYNTQNLIQKINLLKKEKSKHQKENIHKLAKLQLELQKK 293
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPR--IIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
P+ + M L A + R ++A IF + YT++TI ++ + +
Sbjct: 294 FTFPVTCIIMFLTGAPLGA-IIRKGGIGYPTMIALAIFI--IYYTLLTITQNKVEKVEIY 350
Query: 336 PVAAALIPVILTISLSILI 354
P A IP + +SI +
Sbjct: 351 PWIGAWIPNFIFFPVSIWM 369
>gi|257126591|ref|YP_003164705.1| permease YjgP/YjgQ family protein [Leptotrichia buccalis C-1013-b]
gi|257050530|gb|ACV39714.1| permease YjgP/YjgQ family protein [Leptotrichia buccalis C-1013-b]
Length = 365
Score = 114 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 134/361 (37%), Gaps = 14/361 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y + + +++ + ++ + + E+ ++ + +P +
Sbjct: 2 KIIDKYIYNSLILPSVFGISIFTFIMMLNVVMEVMERLFA-SDLPFISIIDYLFYAMPGV 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q IP + ++V+ L+ T+E+V G+ +++++ P + ++L + + +
Sbjct: 61 LVQTIPMGAFLGVMLVYGGLSETNEIVAMEGSGVGLFRIIRPAFIFGVILTLIGLGLELY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ K +Q + ++ ++ SN ++ ++ + ++F I
Sbjct: 121 VNPRALKNINAQTKQILASRPSSLTEEKVFL--SNEEKGFGFYIDEVSNDKATAKNFLII 178
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GRIPIDKNSTTLNIPIKMDGFQK 239
N A+ A ++LKKV Y + G + IPI +K
Sbjct: 179 NKRGDNPYPIVFLAEDAKFDPGIIRLKKVKGYAFDKTGSSQVSAEYQEQEIPISTFFREK 238
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFH------NYRAETQFYFLIVIPLMLVAMTLIAAS 293
E SR + K++ K+NI + +A+ + Y I+ PL + +
Sbjct: 239 KQELKKSRKEMNL-KELEKFYKANIKNPEEKEAALKAQVEIYQRIIGPLASTFLCWLGVL 297
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S+ RS + I + F + + K + A +P + L I
Sbjct: 298 LSVGHRRSGR-GISFGISLIVIFGYIGMASYAKIMVLKNDVPASIAMWVPNFVLFILCIF 356
Query: 354 I 354
Sbjct: 357 F 357
>gi|218961270|ref|YP_001741045.1| putative Permease YjgP/YjgQ [Candidatus Cloacamonas
acidaminovorans]
gi|167729927|emb|CAO80839.1| putative Permease YjgP/YjgQ [Candidatus Cloacamonas
acidaminovorans]
Length = 442
Score = 114 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 51/412 (12%), Positives = 136/412 (33%), Gaps = 63/412 (15%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K ++ L+ ++ + ++ N + E + +P +
Sbjct: 2 KILKRYLLKEHIAPFFIALMVVTFVLLSDRIIDLMNLIIEK-KLPWQTVFEVFGLSLPYM 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ IP LV I+ F ++ E+ ++ GI+++ L+ P V+ ++LL V +
Sbjct: 61 LALSIPMAVLVATILAFGRMSVDREITAIKSSGINVYSLIGPLVIAALLLTGLMVYFNHW 120
Query: 123 IATSGEKIGIDLIQQW------------------------KDNGDKQKSDIIPWMQ-ISN 157
+L+ + ++ D +D++ + + S+
Sbjct: 121 FLPDTNHKLKNLMLKIAYYKPMTIIKEKEFTNFMDYTIYARETTDSLLTDVLIYDRSQSH 180
Query: 158 PQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG 217
+ IF + ++ +++ + I ++ R + ++ + G
Sbjct: 181 FPRTIFAKSGNVIQKDN---GNSLQIILNDGEMHERNEKEVGKYQKTTFSRYIINVRNLG 237
Query: 218 ----------RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
R + L I + ++Q + I+ + S ++ +
Sbjct: 238 SNMEMFETGYRSDREMTYNQLITAIGDHKKELQTKQQEIEELNKRIELLQKSPQNFTRNM 297
Query: 268 YRAETQ-----------------------FYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
Q ++ + ++ LI + L +R++
Sbjct: 298 ELRRLQAMQKMVIDRTQELKELINSLLVEYHKKFSMSFAIIIFVLIGIPLGL-MTRTSGI 356
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + + Y + + G + P A + I+ + L++L+++
Sbjct: 357 GMSFSVSSIIFLVYYIALNGGEQLADKGFMPPFLAMWLANIIFLILAVLLII 408
>gi|262038173|ref|ZP_06011570.1| permease, YjgP/YjgQ family [Leptotrichia goodfellowii F0264]
gi|261747821|gb|EEY35263.1| permease, YjgP/YjgQ family [Leptotrichia goodfellowii F0264]
Length = 366
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/366 (15%), Positives = 125/366 (34%), Gaps = 23/366 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y + + +++ + ++ + L E ++ + VP I
Sbjct: 2 KIIDKYIYNSLILPSVFGISIFTFILMLNVLIEAMERLFA-SDLPFLSVVDYFFYVVPGI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSIL---LGIFTVLV 119
+ Q IP + ++V+ L+ T+E++ GIS+++++ P + ++ +G+ +
Sbjct: 61 LVQTIPMGAFLGVMLVYGGLSETNEIIAMEGSGISLFRIIRPAFIFGLILTFIGLGLEIY 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+NP A ++ + N ++ + +NP++ K+ + F
Sbjct: 121 VNPRALENINKQTKMLLATRPNSLTEEKIFL-----TNPEKGFGFYIDKVDNKKATASQF 175
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---GRIPIDKNSTTLNIPIKM-- 234
+ N A A + L V Y + G + N+P+
Sbjct: 176 LLLNKQGNNPYPVIFLAKSARFDPGVIVLSDVKGYSFDKEGNSQVAAEYKEQNVPVSTFF 235
Query: 235 -----DGFQKFSEQFASRSFYE-IIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ QK + + E + +A + Y ++ PL V +
Sbjct: 236 TSEEGEQRQKKRSEMNLKELREFYNNNIGNPEMKE--AALKALIESYQRVIGPLASVFLC 293
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+ +S+ RS + I + F I+ K + A IP +
Sbjct: 294 WLGVLLSVGNRRSGK-GISFGISLIVIFGYIAIVNYAKIMILKNNVPVSIAMWIPNFILF 352
Query: 349 SLSILI 354
L +
Sbjct: 353 LLCVYF 358
>gi|222099907|ref|YP_002534475.1| Permease YjgP/YjgQ family protein [Thermotoga neapolitana DSM 4359]
gi|221572297|gb|ACM23109.1| Permease YjgP/YjgQ family protein [Thermotoga neapolitana DSM 4359]
Length = 1048
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 57/351 (16%), Positives = 122/351 (34%), Gaps = 25/351 (7%)
Query: 18 LYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIV 77
LG I+ I++ + + I + +L +P + +P L+
Sbjct: 3 FLIGLGGFIIFVSIEILYQLSDLIVRHRVGIGKLFLLLYYYLPYFVAMGVPVGVLLSIFW 62
Query: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ 137
F L+ EL+ + GIS L+ PF+ S+LL + + + + + + + +
Sbjct: 63 TFSKLSEDRELMAIQVHGISQKNLIVPFLFLSVLLSVIVFFLNDQVVPVYQSRAEEAMSK 122
Query: 138 WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDAD 197
+ + +I Q +K + + + + KI+ A
Sbjct: 123 YVLKKPEVFVVENVISKIGEDQYFYV---EKYDEKTNTLWNVVIFKYGSEEKIVT---AK 176
Query: 198 LAIIYNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEI 252
++ L Y ++ + + L+I ++ + + + E+
Sbjct: 177 RVQKREERWYLFDGRYYTVDKDGFLKLDVHFSEMELDITEDIENLLRVGKTPREMTGKEL 236
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS-RSNQPRIIVAYG 311
+K+ F K I + + L + + L+ +SL F RS G
Sbjct: 237 KEKIEFFRKVGIKPSPWI-VELQSRYANSLTPIVIVLVGVPLSLLFQLRSKSW------G 289
Query: 312 IFSGFMLYTIIT----IMKSFGKSGILLPVAAALIPVILTISLS--ILILL 356
+ F+L + + + GK +L P A IP I+ + + +LL
Sbjct: 290 VIFTFVLVVLYQGSGAWLSAMGKENLLDPGFAPWIPNIVFSVMGGLLFVLL 340
>gi|237740743|ref|ZP_04571224.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
gi|229422760|gb|EEO37807.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
Length = 359
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 61/364 (16%), Positives = 120/364 (32%), Gaps = 17/364 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y LK + + +F++D+ + + S+ L + +P I
Sbjct: 2 KIINKYILDE-LKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q IP + ++ F +R SE V + G+SI +L P + +I IF V +
Sbjct: 61 LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRAILKPILAIAIGAAIFIVFLQES 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I I L + + + I K+ +
Sbjct: 121 IIPRSF---IKLKYVGTKIAYENPVFQLKEKTFIDNLDQYSIYVDKVESDGKAKNIIAFE 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
K K + A ++ + LK+ + K + T K + E
Sbjct: 178 KPQDKTKFPMVLTGEEAFWKDNSIVLKQSQFISFDEN--GKKNLTGTFDEKRVVLTPYFE 235
Query: 243 QF-------ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ S ++IK + + + + + + + + + V + +I +S
Sbjct: 236 NLNLKIKDVEALSITDLIKNIRKVDAEEV---LKYKIEIFRKLALIFSTVPLAVIGFCLS 292
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
L R ++ V + F + I +G L P A P +L L +
Sbjct: 293 LGHHRISKKYSFVL-AMIIIFAYIIFLNIGIVMASAGKLHPFIATWTPNVLLYILGYKLY 351
Query: 356 LQKE 359
KE
Sbjct: 352 KAKE 355
>gi|284799561|ref|ZP_06390218.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
gi|284797389|gb|EFC52736.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
Length = 195
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 31/194 (15%), Positives = 75/194 (38%), Gaps = 11/194 (5%)
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPID-KNSTTLNI 230
+H + KN++ +A+ A++ + +LK + G ++ + N
Sbjct: 4 DHTLLGIKIWQRNDKNELTQAAEAESAVLNPDGSWQLKNIRRSILGEDKVEVSTAAEENW 63
Query: 231 PIK-----MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
PI MD +Q + I + +N+ + ++ +V P+
Sbjct: 64 PISVKRNLMDVLLVKPDQMSVGELTTYIDHLEKNNQ----NTQVYAIAWWRKLVYPVAAW 119
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
M L+A + + + +R + + GI G + + + + + P A +P +
Sbjct: 120 VMALVAFAFTPQTTRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPTV 179
Query: 346 LTISLSILILLQKE 359
L L++ ++ ++E
Sbjct: 180 LFALLAVYLIRRQE 193
>gi|15807418|ref|NP_296151.1| hypothetical protein DR_2431 [Deinococcus radiodurans R1]
gi|6460246|gb|AAF11972.1|AE002073_2 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 420
Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 57/373 (15%), Positives = 127/373 (34%), Gaps = 28/373 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY L + L ++L + L E+ + S A L A VP + +
Sbjct: 11 RYVLSEILPPLVGALAAVILLFLLAGLEEVIGPLLAK-GASPLLVARLLALSVPEALSRA 69
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + ++ L SE+ + A G+ + +LL P ++ ++ + + + L+ +
Sbjct: 70 LPIGLMFATLLGLSRLAADSEIKGALAGGVPVTRLLRPVLLLALGITVLSFLIGEGLRPK 129
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE--------NHIWED 178
+ + QQ + + + + + + D
Sbjct: 130 AYSESLRVQQQIVFDNPRVTG-----LGQAGEGGQTLVLTDALNRAISVGEVRPGGELRD 184
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLK----KVVEYQYGRIPIDKNSTTLNIPIKM 234
+ + A+ + L+ + V YQ R + +P++
Sbjct: 185 LRIVAMQAGEAPREVITAESGTLVPGSNVLELRRGQRVTYQNARPVTVLSFENGRLPVQD 244
Query: 235 DGFQKFSEQFAS--------RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
++ +S E+ + + + T F+ I PL +A
Sbjct: 245 VQANFAKDERSSTAQAGLVNLPLRELWDRTEAFRQQKVPAPAEF-TAFHRKIAEPLAALA 303
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
+ A S+++ R + + I F Y ++ + G++G L PV AA P ++
Sbjct: 304 LAFFAVSLAVYSFR-GSLNLGFTWAILLAFAYYATWSVFRIMGENGGLPPVVAAYAPDLI 362
Query: 347 TISLSILILLQKE 359
+ + +L + E
Sbjct: 363 AVVAGLALLWRSE 375
>gi|256820810|ref|YP_003142089.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea DSM
7271]
gi|256582393|gb|ACU93528.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea DSM
7271]
Length = 358
Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 137/360 (38%), Gaps = 15/360 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y K YL T ++ + + ++DL+E ++M + ++ + +
Sbjct: 2 KILDWYILKRYLLTFFMMIILFIPIGIIVDLSEKVDKMIQK-GAPMNEILWYYLSFIVYF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P + + I L +E++ ++ G+S + L P++VG+ ++ + +
Sbjct: 61 ANILFPILLFLSIIWFTSKLANNTEIIAIQSSGVSYMRFLRPYIVGASIISVIVFFMGMF 120
Query: 123 IATSGEKIGIDLIQQW-KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + + D ++ + + + SD+ ++ ++ ++ +F+
Sbjct: 121 IVPAASTVYNDFWNKYIRSSKVESVSDLYNQFSDND-----YLYVSSFNYQDKRGYNFSV 175
Query: 182 ITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIP---IDKNSTTLNIPIKMDG 236
+ K+ + +A+ + +L + + G + ++ K D
Sbjct: 176 EHFNGI-KMTEKINAETIQWIDSTKTYRLTNYSKRKIGEGDDVIVKRDQLDTIFNFKPDD 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+++ +E+ K + + Y +TLI +VS
Sbjct: 235 LMPMEYTAENKNLFELNKFIEREKMKGSPNLNMYLLVKYRRWGAISTAFILTLIGVAVSS 294
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK-SGILLPVAAALIPVILTISLSILIL 355
R I + G+ GF + + + SG L P+ A L+P ++ ++L+IL+L
Sbjct: 295 VKKR-GGMGINLMVGVVVGFSFVFFDRVFGTLAQTSGGLSPLMAVLLPNLIFLTLAILLL 353
>gi|332521048|ref|ZP_08397506.1| permease YjgP/YjgQ family protein [Lacinutrix algicola 5H-3-7-4]
gi|332043141|gb|EGI79338.1| permease YjgP/YjgQ family protein [Lacinutrix algicola 5H-3-7-4]
Length = 340
Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 52/343 (15%), Positives = 129/343 (37%), Gaps = 14/343 (4%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVV 78
+L + + + L E ++ + + + + P + I
Sbjct: 1 MMILLFIPIGITVHLAEKIGKILDR-EAPLGETLIYFLDFTIYFAHLLFPLFLFLSVIWF 59
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
L +E++ + G+S + L P+++G+ ++ +F++L+ +A K D ++
Sbjct: 60 TSKLANNTEVIAFLSSGVSFTRFLRPYLIGATIVAMFSILLGLYLAPVASKGFNDFQYKY 119
Query: 139 KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA-- 196
+ Q + ++ N ++ I P +F+ + NK+ ++ A
Sbjct: 120 LKRKNNQAQSNV--LKQINDKE--IIYVSSFDPIKKTGLNFSLEHF-ENNKMTYKISAAN 174
Query: 197 ----DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEI 252
+ IY + LK+ V + I++ T+ +++ + + E+
Sbjct: 175 IRYIEEDSIYRLRSYLKRNVGENEDELAIERKKDTI-FSFELEDLVPEEYIAETLRYSEL 233
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
+ + K + R + + Y +P+ + +T+IA +VS + R + +A+GI
Sbjct: 234 TRFIEREEKRGSSNIGRYKLELYRKWSLPVSVFILTIIAVAVSSKK-RRGGMGVNLAFGI 292
Query: 313 FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ I + P+ A P + L+ ++L
Sbjct: 293 CIAMVFVFFDKIFGTMAAQSDFSPLIAVWFPNFIFGILAAILL 335
>gi|302037951|ref|YP_003798273.1| putative YjgP/YjgQ family permease [Candidatus Nitrospira defluvii]
gi|300606015|emb|CBK42348.1| putative Permease, YjgP/YjgQ family [Candidatus Nitrospira
defluvii]
Length = 361
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 53/362 (14%), Positives = 111/362 (30%), Gaps = 17/362 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY F+ L + L A+ V + ++ + A +P +
Sbjct: 5 ILDRYIFRE-LFSPFGISLAALCFVMLTKELLRLVELLVTKGIGFLSVLKVFAHLLPSFL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P ++ I F L+ ELV RA G S+ +L + + L+ T+++
Sbjct: 64 VLTLPIAGIIATITAFGRLSLDKELVAMRAAGFSLLRLSQSVFIFAALVCGLTLVMAQYG 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ D + + +P+ +D I
Sbjct: 124 QPWSNVNLKKVALNLLR-------DELVLELDRGVFNEAIPKMTIYVPDAQEGQDNRGIF 176
Query: 184 IDKKNKII--HRKDADLAIIYND------KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + A + D ++L V + + P + +
Sbjct: 177 VADERNPADPRIIVAQQYQVMTDPASSQVALRLMNGVIHSRPQNPEEYQKISFTSYDLKL 236
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
R+ ++I+ S + R ++Y + P + ++ V
Sbjct: 237 SLSASLYGAEERTPIDVIRAKLESTGWTDTNALRRLMEYYKDLAFPAASLVFCILGVPVG 296
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ RS A G+ Y I + + + P A A +P ++ ++IL
Sbjct: 297 IVSKRSGSIG-GFAVGVLVVIAYYVINVACEFLVTTLWISPFAGAWLPNVIFTVVTILWF 355
Query: 356 LQ 357
+
Sbjct: 356 YR 357
>gi|94987324|ref|YP_595257.1| permease [Lawsonia intracellularis PHE/MN1-00]
gi|94731573|emb|CAJ54936.1| predicted permeases [Lawsonia intracellularis PHE/MN1-00]
Length = 384
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 61/370 (16%), Positives = 135/370 (36%), Gaps = 31/370 (8%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L R F+ + ++GA++ + +I+ + I +L + VP
Sbjct: 1 MIPLLQRQIFRE-STYIFFLVVGALLTLIIINRAIQMRDLFIGLKLEILDVLILFSYMVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L + +IP ++ + F +N EL+ +A GISI+Q+L + S + T+ +
Sbjct: 60 LFLILVIPIACMLGVFLTFLRMNLDKELIALKASGISIYQMLPAPLAFSFFCTLLTLWIS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
G + + K + +N + A+++ P +
Sbjct: 120 LFWIAWGMEQFKTTLLDIARTKVKISIQPGVF---NNNFPGFVLFARQVDPLSGELHQIL 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+K++ + A I + K + + G I + + F F
Sbjct: 177 LEDRSQKDRHL-VILAPTGTIETNPTKGELIFNLTNGNI--------YTMSLNKTSFLSF 227
Query: 241 SEQFASRSFYEIIKKMSFSNKS-------------NIFHNYRAE----TQFYFLIVIPLM 283
+ ++K ++F+ NI + + + + + P
Sbjct: 228 DQYLVRIPLTTLLKNINFNELRPKEMSWERLIKEYNITNTMQYQNKISVELHKRWAYPAA 287
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+A+T+ A +++ F ++ ++ I F+ Y +++ S G+SG + P +P
Sbjct: 288 CIALTIFALPLAIMFEGIHRQFGLILALIMF-FIYYGLMSFGFSTGESGTIPPAIGLWLP 346
Query: 344 VILTISLSIL 353
IL L +
Sbjct: 347 NILFFLLGLY 356
>gi|262068070|ref|ZP_06027682.1| permease, YjgP/YjgQ family [Fusobacterium periodonticum ATCC 33693]
gi|291378156|gb|EFE85674.1| permease, YjgP/YjgQ family [Fusobacterium periodonticum ATCC 33693]
Length = 359
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 57/367 (15%), Positives = 123/367 (33%), Gaps = 23/367 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y LK + + +F++D+ + + S+ L + +P I
Sbjct: 2 KIINKYILDE-LKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q IP + ++ F +R SE V + G+SI +L P + +I IF + +
Sbjct: 61 LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRAILKPILAIAIGAAIFILFLQES 120
Query: 123 IATSG--EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I + + +++ + K + I K+ +
Sbjct: 121 IIPRSFVKLKYVGTKIAYENPVFQLKEKTFI-----DNLDQYSIYVDKVESDGKAKNIIA 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN------IP--I 232
+ K K + A ++ + LK+ + + T + P
Sbjct: 176 FEKPEDKTKFPMVLTGEEAFWKDNAIILKQSQFISFDETGKKNLTGTFDEKRVVLTPYFE 235
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
++ K E + + I+K+ + + + + + + V + +I
Sbjct: 236 NLNLKIKDVEALSITDLVKNIRKVETEE------VLKYKIEIFRKLALIFSTVPLAVIGF 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+SL R ++ V + F + I +G + P A P +L L
Sbjct: 290 CLSLGHHRISKKYSFVL-AMIIIFAYIIFLNIGIVMASAGKIHPFIATWTPNVLLYFLGY 348
Query: 353 LILLQKE 359
+ KE
Sbjct: 349 KLYRAKE 355
>gi|315125733|ref|YP_004067736.1| hypothetical protein PSM_A0635 [Pseudoalteromonas sp. SM9913]
gi|315014247|gb|ADT67585.1| hypothetical protein PSM_A0635 [Pseudoalteromonas sp. SM9913]
Length = 371
Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats.
Identities = 56/365 (15%), Positives = 132/365 (36%), Gaps = 26/365 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+++RY LK+ + L M + I E + + A ++P +
Sbjct: 3 LIFRYLTTEVLKSQVAVFLTLMTIFLSQKFVVILGDASE-GSIPAKLVFAMIALKLPQLA 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + I+ + + SE+ + +A G+S W ++ ++ S++L + ++ +
Sbjct: 62 SLILPLSLFLGIILAYSRIYADSEMTVLKACGVSEWYVVRITLISSVILALLAAVLTLYV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L +Q K + + Q N + +FI I
Sbjct: 122 APWASEQEYQLKEQAKADAGLSALRAGRFQQTGNEKAVVFIH--NIENGGKELNKVFVAQ 179
Query: 184 I--DKKNKIIHRKDAD-----LAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIK 233
+ +K + A+ A ++ L Y+ N T ++ I+
Sbjct: 180 LPDSEKGDLARLVYAEQGVVIEAQSGEQQLVLTDGKRYETDGEAPSLNLTEFDGYSVQIR 239
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + E++ + A Q+ + + IPL + +TL+A
Sbjct: 240 EQEIEHQRRKLEAVPTRELMS----------INTPEAIAQWQWRLAIPLSIPLLTLLAVP 289
Query: 294 VSLEFSRSNQPRIIV-AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+S+ R + +V A ++ G + ++ K + G + P + + +
Sbjct: 290 LSVVNPRQGKFAKLVPAISLYLG--YFILLNAAKFAVEDGKIPPSIGLWWIHLSALFIGS 347
Query: 353 LILLQ 357
L++++
Sbjct: 348 LLIIR 352
>gi|145637643|ref|ZP_01793298.1| predicted permease [Haemophilus influenzae PittHH]
gi|145269166|gb|EDK09114.1| predicted permease [Haemophilus influenzae PittHH]
Length = 195
Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats.
Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 12/197 (6%)
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPI------DK 223
++ +D T D+++ +I K A+ A D K L++V + I +
Sbjct: 3 DDTKLDDIYIYTFDQQHNLIKLKHANQASYSEDEAKWTLRQVNHSTITKDEIITTNHLSE 62
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
T P K+ + Y I + + + R E F+ I P+
Sbjct: 63 TWETSLTPDKLGAVSLRPTSLSISGLYHYISFLRETGQ----DVSRFELTFWRKIFQPVS 118
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M L+A S RS + GI GF+ Y + I+ + + ALIP
Sbjct: 119 VGVMMLLALSFIFGSLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIP 178
Query: 344 VILTISLSILILLQKED 360
+L I + +L +K D
Sbjct: 179 SLLFIVMIWWLLSRKRD 195
>gi|19704366|ref|NP_603928.1| hypothetical protein FN1031 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296327426|ref|ZP_06869973.1| YjgP/YjgQ family permease [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|19714618|gb|AAL95227.1| Hypothetical membrane-spanning protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|296155439|gb|EFG96209.1| YjgP/YjgQ family permease [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 359
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 55/344 (15%), Positives = 112/344 (32%), Gaps = 7/344 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y LK + + +F++D+ + + S+ L + +P I
Sbjct: 2 KIINKYILDE-LKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q IP + ++ F +R SE V + G+SI +L P + +I IF V +
Sbjct: 61 LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIVFLQES 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I I L + + + + I ++ +
Sbjct: 121 IIPRSF---IKLKYVGTKIAYENPVFQLKEKTFIDNLDEYSIYVDEVSSDGKAKNIIAFE 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLK--KVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ KNK + A + + +K + V + + + FQ
Sbjct: 178 KPEDKNKFPMVLTGEEAFWKDSAIIIKESQFVSFDEKGKKNLVGTFDEKRVVLTAYFQDL 237
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + II + K + + + + + + V + +I +SL R
Sbjct: 238 NIKIKDVEALSIIDLIKGLKKVEATEVIKYKIEIFRKLALVFSTVPLAVIGFCLSLGHHR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
++ V + F + I +G L P A P
Sbjct: 298 ISKKYSFVL-AMIIVFAYIIFLNIGIVMATAGKLNPFIATWTPN 340
>gi|153877760|ref|ZP_02004356.1| conserved hypothetical protein, membrane [Beggiatoa sp. PS]
gi|152065776|gb|EDN65644.1| conserved hypothetical protein, membrane [Beggiatoa sp. PS]
Length = 215
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 33/219 (15%), Positives = 70/219 (31%), Gaps = 15/219 (6%)
Query: 146 KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK 205
+ W + + FI + I P+ + D + ++ A A K
Sbjct: 4 STRYGFWARDGHD----FINVRTIFPDGGFGT-ISLYEFDDEQRLQALTYARTAYYQEGK 58
Query: 206 VKLKKVVEYQYGRIPIDKNSTTLNI------PIKMDGFQKFSEQFASRSFYEIIKKMSFS 259
LK V + + + P + + +S Y I+ +
Sbjct: 59 WLLKGVEKNILSANQVTRQFLENVTWDAILKPELIKMVVISPYKLSSLGLYNYIEYRQQN 118
Query: 260 NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLY 319
+ + E + + PL+ V M L+A R+ + G G +
Sbjct: 119 GQR----TAQYELALWTRLSYPLVGVTMILLAIPFVFGSLRTVSIGQRILVGALLGVGFH 174
Query: 320 TIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + + G L P +A +P + + L+I+++
Sbjct: 175 MLNQAVSNMGLVYGLHPAISAFLPPLAFLMLAIVMMRHL 213
>gi|313680974|ref|YP_004058713.1| permease yjgp/yjgq family protein [Oceanithermus profundus DSM
14977]
gi|313153689|gb|ADR37540.1| permease YjgP/YjgQ family protein [Oceanithermus profundus DSM
14977]
Length = 377
Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 64/391 (16%), Positives = 137/391 (35%), Gaps = 48/391 (12%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL RY + + L + VF+ + ++ L + + VP
Sbjct: 1 MFTILDRYILREVV-PVLLVSALLYVAVFLFGFFYVGSRW--LDGAPVLKVLTWLGYHVP 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ Q++P + ++ F + ++ ++A G+S+ +LL P ++ LL F++ +
Sbjct: 58 GVLVQVLPMAVVSAVVIPFGRMATEGAVLATQAGGVSLVRLLRPVLLLGFLLAGFSLYLS 117
Query: 121 NPIATSGEKIGIDLIQQW-----------------KDNGDKQKSDIIPW---------MQ 154
+ NG + W +Q
Sbjct: 118 ENVVPESNARVRGYWYDELTTPGHGLYRLRGKTVPLGNGIELFFSGYDWAHRAMTGVRLQ 177
Query: 155 ISNPQQDIFIGAKK--ILPENHIWEDFTSITIDKK--NKIIHRKDADL-AIIYNDKVKLK 209
+ +Q I A + + + T+D + +++ DA L A + K
Sbjct: 178 LWKDRQVTVIFADRGVYQGRDLKLTGYRIYTVDYAAIDGLLNASDAQLPARLQQ---VFK 234
Query: 210 KVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF---ASRSFYEIIKKMSFSNKSNIFH 266
V + ++ STT+ + + D + S E ++ + K
Sbjct: 235 NVSVPRS-----EEASTTIKVGLSRDEALANFADPLAADTLSLSEAWQRYTD-PKLAPAD 288
Query: 267 NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
A F+ + +PL V + LI+ ++ + RS P + + + Y + + +
Sbjct: 289 RTDAGLAFHSKLALPLANVVLVLISLPFAVYYGRS--PGLSMGMSVMIAVGYYLVFLLAR 346
Query: 327 SFGKSGILLPVAAALIPVILTISLSILILLQ 357
S G G+L P AA +L + ++ +
Sbjct: 347 SMGGLGMLPPALAAWGANLLFAFVGWRLIRR 377
>gi|254455252|ref|ZP_05068681.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
HTCC7211]
gi|207082254|gb|EDZ59680.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
HTCC7211]
Length = 325
Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 56/313 (17%), Positives = 120/313 (38%), Gaps = 6/313 (1%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
S L+ P +I +++PFI L+ + F L +E+ I + G+ +L
Sbjct: 11 EVSSGFPIFLSLLNSPSMIFEMLPFIFLITTQLFFIKLFNNNEIEIFKYSGLKNTSILKI 70
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGD--KQKSDIIPWMQISNPQQDI 162
F + I GI ++ + + ++ ++ + + W++ ++
Sbjct: 71 FSLIVISSGIILTIIFYNFSAVFKNFYLEEKTKFTSDSKYLAVITKNGLWIKDEIDEKIY 130
Query: 163 FIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
+ + KI E++ + DK K+I +D I + + V Y I
Sbjct: 131 IVNSSKI--ESNFLINNFITEFDKDYKVIRNLKSDKINIQSTDWQAFNVKVYDKNNYEI- 187
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
K + Q +S SFY++ + + + K + QF ++ PL
Sbjct: 188 KKQLNIKTNFDYKRIQTLYSNLSSLSFYQLFE-LRKNYKKLNYSLIEINLQFLKILSFPL 246
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
L + + ++ + R + ++ G+F ++Y I G + + + A I
Sbjct: 247 YLFLVAIFSSLIMFRVKRLHNTTFKISLGLFFSVIIYYINNFFMVMGNTERISLIFAIFI 306
Query: 343 PVILTISLSILIL 355
P+IL ++ L+L
Sbjct: 307 PLILLSIINSLML 319
>gi|15806095|ref|NP_294799.1| hypothetical protein DR_1075 [Deinococcus radiodurans R1]
gi|6458807|gb|AAF10648.1|AE001958_2 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 394
Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 54/388 (13%), Positives = 121/388 (31%), Gaps = 46/388 (11%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L G ++ ++ L +S A ++P +
Sbjct: 17 LTRYVTRELLPPLLA---GTLLFTAILSFGYFFISSQWLSGVPVSLIARWIGYQLPDTLV 73
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P +++ +V F +N ELV +A GI + ++ P V +L+ +V + +A
Sbjct: 74 KVLPMAVVLMTVVAFGRMNTERELVAVQAGGIGLGRVTRPAAVVGLLVTALSVWLSLWVA 133
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L + + + Q + + + +
Sbjct: 134 PRANVETRGLYWDALTGAGLSQLVG----KTVDLGQGLTLAMQGYDAGARQMQGVRVEKW 189
Query: 185 DKKN-KIIHRKDADLAIIYNDKVKLKKVVEYQYG------------------RIPIDKNS 225
DK N + AD +++ L Y+ R + K
Sbjct: 190 DKDNFRQGMVVFADAGKFEGNQLSLTGYQVYRVDYAAAAALSGVADNDPAAFREAVQKVF 249
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEI------------IKKMSFSNKSNIFHNYR--AE 271
+ +P + + + + ++ + + R A
Sbjct: 250 PLVQVPEDRNAALNLDTGLSRKQTLAQYADAIGADAEGWPELITKLTAPGVPQSERDAAR 309
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS 331
+ +P + + L A +L F R+ + VA I Y + ++ + +
Sbjct: 310 VNLNRKLALPFANLVLVLAALPFALRFGRTLGVSLGVALVIAV--AYYLLFSVGLTL--A 365
Query: 332 GILL--PVAAALIPVILTISLSILILLQ 357
G+L P + I+ + +L +
Sbjct: 366 GLLPGLPELGVWLANIVFALGGLWLLRR 393
>gi|257466752|ref|ZP_05631063.1| hypothetical protein FgonA2_04880 [Fusobacterium gonidiaformans
ATCC 25563]
gi|315917901|ref|ZP_07914141.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
gi|313691776|gb|EFS28611.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
Length = 358
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/360 (14%), Positives = 123/360 (34%), Gaps = 16/360 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ Y K + + + +F++D+ + + S+ A + + VP I
Sbjct: 2 KIIDSYILKEC-RGPIILSVSIFTFIFLLDIIVAMMENIIVKGISVFDIARILSFYVPPI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q IP V ++ F R+SE + +IG+ I +L P + I F + +
Sbjct: 61 LTQTIPLGLFVGIMITFSKFTRSSEAIAMNSIGMDIRAILKPILTLGIASMFFILFLQES 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I L + + +M +N + + K+ + H
Sbjct: 121 IIPRSYIKLQYLASKIAYENPVFQLKERTFM--NNLEGYS-LYIDKVERDKH-ASGILIF 176
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-----NSTTLNIPIKMDGF 237
D+K A + + L++ + + K + +
Sbjct: 177 ENDEKTIFPIVLVGHQAYWRDSSIILERANFISFDEKGVRKLTGSFEDKRVELQAYFSDL 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q ++ S ++++M +K + + + +P V ++++ +S+
Sbjct: 237 QIKVKEIEMMSIGTLLREMKGKSKEE---KLIYKVEINRKLALPFSSVMLSVLGVLLSIG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + R + GI + F ++ + G + + +P + + ++ L
Sbjct: 294 HQRSGK-RAGILVGILTIFFYICLLNVGIVLANVGKIPILLGVWLPNV--LLAALTYRLY 350
>gi|312888277|ref|ZP_07747853.1| permease YjgP/YjgQ family protein [Mucilaginibacter paludis DSM
18603]
gi|311299111|gb|EFQ76204.1| permease YjgP/YjgQ family protein [Mucilaginibacter paludis DSM
18603]
Length = 362
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 60/351 (17%), Positives = 117/351 (33%), Gaps = 18/351 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I Y K YL T ++ + ++++ V D++E + + A +P
Sbjct: 6 IKIFDWYIIKKYLGTFVFTIAIFIVVIVVFDVSEKLDNFLKNNVSLKEIIFEYYAGSIPF 65
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I + P I + I + +E+V + G S + L P+ + + L+ I ++L
Sbjct: 66 YIDMLSPLINFLAVIFFTAKMANQTEIVPVLSSGASFNRFLRPYFICASLIFIVSLLADI 125
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K+ I + D KSD+ + + F+ + + FT
Sbjct: 126 YLIPFTNKLKITFENAYVVLEDPTKSDVHIKL-----DEHTFVYMQSFDNASKTGYQFTL 180
Query: 182 ITIDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIP------IDKNSTTLNIPIK 233
D + + A+ + + +++ + K++ +P
Sbjct: 181 EKFDGDV-LKQKLTANKIVYDSLKRVWSIQQFDTRYVNGLREKMVHGEKKDTVLDMVPAD 239
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + IKK + I + Y V P+ +TLI S
Sbjct: 240 FVLHNNIYSAMSRKELDNNIKKEEYRGTGVINDML---IEKYKRFVHPMASFVLTLIGVS 296
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+S R + + G F F + F G L P+ A IP
Sbjct: 297 LSSRKVR-GGVGLPLGIGFFLCFAYIVVDQFAVVFSLKGGLPPIIAVFIPN 346
>gi|313680814|ref|YP_004058553.1| permease yjgp/yjgq family protein [Oceanithermus profundus DSM
14977]
gi|313153529|gb|ADR37380.1| permease YjgP/YjgQ family protein [Oceanithermus profundus DSM
14977]
Length = 335
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 56/352 (15%), Positives = 111/352 (31%), Gaps = 27/352 (7%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L L + LV DL + + + ++ L R+P +
Sbjct: 2 LQRYLLREILTPYLLGTLLFIGLVTT-DLLSSLSGVFLSRGTTWTQVGELVLYRMPYTLG 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + +V R SEL A GI+ +LL P + + + + +
Sbjct: 61 VALPLGLVFAVLVALARWIRDSELKAVYAAGIAPVRLLAPVLGLAAFVAAVAWVNAGWVK 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE---NHIWEDFTS 181
+ DLI + PQ A+++ P+ +
Sbjct: 121 PEAQARYDDLIYEIYYGHAPSGVLTNAAY---APQGLGVYYARRVYPDDAGGGRLQGVRV 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+T + AD + + LK + G P + L P + +
Sbjct: 178 VT--PDGAVWS---ADEGVWKDANWVLKNAWKTAPGARPEFWETIPLPFPSRFVEKKTTY 232
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
E E+ K + + ++A+ +AA V L +
Sbjct: 233 ESLPMAELRELAKVDPQARFP-----------LQRRHADAVGVIALAWLAAVVGLSLREA 281
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ V + F Y + T+ + ++ P A + ++ +L++
Sbjct: 282 AWAFVAV---VLLIFGYYVLWTLAAQLARFAVVGP-YGAWLADVVYFALALA 329
>gi|257452883|ref|ZP_05618182.1| hypothetical protein F3_07439 [Fusobacterium sp. 3_1_5R]
gi|317059425|ref|ZP_07923910.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
gi|313685101|gb|EFS21936.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
Length = 358
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 52/360 (14%), Positives = 123/360 (34%), Gaps = 16/360 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ Y K + + + +F++D+ + + S+ A + + VP I
Sbjct: 2 KIIDSYILKEC-RGPIILSVSIFTFIFLLDIIVAMMENIIVKGISVFDVARILSFYVPPI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q IP V ++ F R+SE + +IG+ I +L P + I F + +
Sbjct: 61 LTQTIPLGLFVGIMITFSKFTRSSEAIAMNSIGMDIRAILKPILTLGIASMFFILFLQES 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I L + + +M +N + + K+ + H
Sbjct: 121 IIPRSYIKLQYLASKIAYENPVFQLKERTFM--NNLEGYS-LYIDKVGRDKH-ASGILIF 176
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-----NSTTLNIPIKMDGF 237
D+K A + + L++ + + K + +
Sbjct: 177 ENDEKTIFPIVLVGHQAYWRDSSIILERANFISFDEKGVRKLTGSFEDKRVELQAYFSDL 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q ++ S ++++M +K + + + +P V ++++ +S+
Sbjct: 237 QIKVKEIEMMSIGTLLREMKGKSKEE---KLIYKVEINRKLALPFSSVMLSVLGVLLSIG 293
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + R + GI + F ++ + G + + +P + + ++ L
Sbjct: 294 HQRSGK-RAGILVGILTIFFYICLLNVGIVLANVGKIPILLGVWLPNV--LLAALTYRLY 350
>gi|302338545|ref|YP_003803751.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
11293]
gi|301635730|gb|ADK81157.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
11293]
Length = 381
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 58/376 (15%), Positives = 127/376 (33%), Gaps = 30/376 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I Y K + + + + FV L + ++ +++ +L +P
Sbjct: 10 FRIADAYLLKEFFFSFCIAFIFFFFIFFVNQLLLLAEEVLSK-RVGVTKVLLLILYSLPA 68
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ PF L+ ++ + +E+ RA+G+S +L P ++ ++L + +
Sbjct: 69 ILAFTFPFSALLGTVMAIGRFSSDNEITAFRALGVSHLRLFFPVMLLGLILSGISFFSND 128
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G L + + + + + D + I D
Sbjct: 129 VLLPRGTVQFGRLYRDILYSNPALELEPYAVRRYK----DTVLVTGAISDRE--ISDLVI 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-------VKLKKVVEYQYGRIPIDKNSTTLNI---P 231
+ D+ A A + D+ ++L++V + + D + T +
Sbjct: 183 LDHDEDQN-ERMLSAKRAYLEQDEKENGVISLRLEEVFGHTAKKREGDFDYFTADTMEYN 241
Query: 232 IKMDGFQ-----KFSEQFASRSFYEIIKKMSFSNK----SNIFHNY--RAETQFYFLIVI 280
I + F + ++ + Y I+ M K F + +FY + I
Sbjct: 242 ILLSSFTYSINNLTPREMSTAALYGEIQTMEAKKKEDQNKKRFDRTLQLYKIEFYKKLAI 301
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
PL A L RS + + G+F+ + ++ + ++ G + A
Sbjct: 302 PLGCFTFMFFAFPAGLLPKRSGRW-VGFVLGLFAAAFYWMLLIVGQTLGVRFQVSAALAM 360
Query: 341 LIPVILTISLSILILL 356
P I + +LI L
Sbjct: 361 WFPNIFIAFIGLLIYL 376
>gi|95928709|ref|ZP_01311455.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
gi|95135054|gb|EAT16707.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
Length = 395
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 54/372 (14%), Positives = 137/372 (36%), Gaps = 32/372 (8%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y + + L L+ ++ + L ++ + + ++S L A +P
Sbjct: 6 LQTYISREIIAPFLLSLVLFTFVLLLSRLLKLIEMVVDK-GVAVSEILHLFACLLPSFFV 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ F L+ SE+V +A G S+++L P ++ ++L+ FT +
Sbjct: 65 ITVPLSFLLAVMLAFGRLSADSEIVAMKAAGFSLYRLSQPVLIIALLVCGFTAY----LT 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD-IFIGAKKILPENHIWEDFTSIT 183
E G ++Q + K+ + QI N + D + + A + + + I+
Sbjct: 121 LVAEPAGRVKLKQRLIDIAYSKAAVALQPQIFNEEFDGLMMYANDVDNQTNTMTGV-FIS 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKV------KLKKVVEYQY---------GRIPIDKNSTTL 228
++ A I +D+ L+ ++ + L
Sbjct: 180 DERMGNTPSIIVAQRGEIRSDRTNGSLLMHLRDGSIHRPVIRSGKRSYQVVDFQSYDVNL 239
Query: 229 NIPI---KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
++ + ++ +++ + ++S + + +V+P +
Sbjct: 240 SLNTADKEEKSLNLKPKEMTTKALMQADPELSEEKQRER------RVELMERLVLPFSPL 293
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
L+A + + RS + +F + Y +++ K+ + + + P +
Sbjct: 294 IFALLAVPLGIRSHRS-PKGGGFSVALFIFLLYYLCLSVAKTMVQENNWPLLGSLWGPSV 352
Query: 346 LTISLSILILLQ 357
I + IL+L++
Sbjct: 353 AFIVVGILLLIR 364
>gi|225848308|ref|YP_002728471.1| permease, YjgP/YjgQ family [Sulfurihydrogenibium azorense Az-Fu1]
gi|225643577|gb|ACN98627.1| putative permease, YjgP/YjgQ family [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 355
Score = 109 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 53/362 (14%), Positives = 140/362 (38%), Gaps = 19/362 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY ++ L ++ ++L EI + ++ ++++ + ++P
Sbjct: 2 KILDRYIYEKLTVYFLIVFPAFSLVSVFVELIEILRK-SKVQDFNL--ILIYILAKLPEN 58
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I+P ++ VV + ++ E+ GISI + V+ SI + VL +
Sbjct: 59 FYYIVPISLIISAFVVANEIVKSREIYPILLNGISINYISTRIVIFSIFISFLQVLNLEV 118
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDII--PWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ K+ ++ Q+ K+ + + I W+++ + FI E + ++
Sbjct: 119 LMPKSNKVYVETYQKLKNQPLEDEKAIAYNLWLRL---DEKNFIYFDFFDLEKKVGKEIV 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK----NSTTLNIPIKMDG 236
I++D+ +R +A+ + ++ + L + E I K + + + + +
Sbjct: 176 LISMDENFLPTNRWEAESFKVESNSLTLLRGKEITVKSIEDVKVSKFDEKKVYVSVDPEK 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+K ++ S ++ K + ++ + ++FY + + +T+ A
Sbjct: 236 IKKLIKEKKPVSITQLYKVAKIA-QNYGYDASYFWSKFYQKLATVISPFILTVFAVGFIW 294
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
++ I G S + + +I+ + G + +L +S+ ++
Sbjct: 295 RKNKF-----ITLAGFLSTVLYWYGTSIVSAIASVGNIPYYF-IFSFDVLFLSIGFYLMF 348
Query: 357 QK 358
+
Sbjct: 349 KT 350
>gi|325282730|ref|YP_004255271.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
gi|324314539|gb|ADY25654.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
Length = 387
Score = 109 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 58/351 (16%), Positives = 126/351 (35%), Gaps = 19/351 (5%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y L + L ++L+ + L ++ + S + A L A VP + +
Sbjct: 29 YVLSEILPLLVAALSALIVLLMLKGLEDVLAPLLAK-GASPALVAQLLALNVPEAMAFGL 87
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + ++ L+ SE+ + + GI L P ++ + L+ + + + + T
Sbjct: 88 PLALMFAALLGLSRLSGDSEIKAALSGGIPGTTLFRPVLLLAALVTLLSFGINEVLVTRA 147
Query: 128 EKIGIDLIQQW-----KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + +Q + G Q + ++ + + + E+ + +
Sbjct: 148 KVQAQSVQRQIVLDNPRVIGLAQTAGGGLVLRDALDRAISV----GSVGEDGTLRNLRIV 203
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLK----KVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
T+ A ++ L+ + V YQ R N T +P++ D
Sbjct: 204 TMQPGLPPREVITAREGVLQEGSNVLELRGGQRVSYQGARPVTVLNFETGQLPVQ-DVQA 262
Query: 239 KFSEQFASRSFY---EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
F FY +K+ + + + + T Y PL +A+ A S++
Sbjct: 263 SFDGGSGLDPFYLPLGTLKERTDGYRDSGIRSPGDFTALYRKFAQPLSALALAFFAVSLA 322
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
L RS + + + + F Y ++ + G++G L AA P ++
Sbjct: 323 LYTFRSG-LNLGLVWALLLSFAYYATWSVFRVMGENGALPAPVAAFGPDVI 372
>gi|169656684|ref|YP_001428997.2| putative permease YjgP/YjgQ family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|290954454|ref|ZP_06559075.1| putative permease YjgP/YjgQ family protein [Francisella tularensis
subsp. holarctica URFT1]
gi|295312116|ref|ZP_06802927.1| putative permease YjgP/YjgQ family protein [Francisella tularensis
subsp. holarctica URFT1]
gi|164551752|gb|ABU62041.2| putative permease YjgP/YjgQ family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
Length = 353
Score = 109 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 62/370 (16%), Positives = 135/370 (36%), Gaps = 29/370 (7%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ + RY F+ + L + IL F+ + N S + ++P
Sbjct: 2 LLNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSN--NTANVSNFELIINTLIQLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ ++P +V ++ L SE+++ R+ G S Q+ ++ ++ + T++
Sbjct: 60 GILYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA ++ + + + W + + F+ I P N
Sbjct: 120 GYIAPILQRQVDTNMVTY--------NTHDLWFKTPDG----FMNIANIEPTNGKAYGIR 167
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + NK+ + A+ A ND + +I + +I I +
Sbjct: 168 KFMV-QDNKVREIRYAESATYINDA----SANVFNIRKIIFPASDGQKHINIVTNMTNAV 222
Query: 241 SEQFASRSFYEII----------KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
S ++I +++ SN +F+ + PL L+ + L+
Sbjct: 223 WSNPLPISVAKVITINDNNYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILL 282
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A +S+ +RS+ + + G F GF + I I L P+ A P ++ + L
Sbjct: 283 AVPLSIGSTRSSTLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALIL 342
Query: 351 SILILLQKED 360
I + ++ ++
Sbjct: 343 LIYLFIKSKE 352
>gi|254446201|ref|ZP_05059677.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
DG1235]
gi|198260509|gb|EDY84817.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
DG1235]
Length = 392
Score = 109 bits (274), Expect = 6e-22, Method: Composition-based stats.
Identities = 54/385 (14%), Positives = 124/385 (32%), Gaps = 35/385 (9%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY T+L +L +V + + M ++ L +P +
Sbjct: 4 HRYILWNVAVTSLGAILMFAFIVLLGEFMRDLFGMLAEGQVTVGTCFRLVGLLLPYVFVH 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+P L ++ L+ E+V RA G+SI +L + V +IL + ++ V
Sbjct: 64 ALPMGLLTGIMISMGRLSSQGEVVALRASGVSIARLASSVVFLAILGVVTSIAVNFEFGP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
I + G + IIP + + + K E+ + + +D
Sbjct: 124 RAINAYRGEIAEAVRTGPLRF--IIPRKFVKDFPGFVVYAGAK---EDDVLRELWIWKLD 178
Query: 186 KKNKIIHRKDADLAIIYND------KVKLKKVVEYQY------------GRIPIDKNSTT 227
+ A+ + D ++ L+ + G +
Sbjct: 179 DGGRTTSLIKAESGTLELDEYEQTLRLLLRSGSIAKMDSKDPEDFSEIRGELSFGSFPLE 238
Query: 228 LNIPIKMDGFQKFSEQF-----ASRSFYEIIKKM------SFSNKSNIFHNYRAETQFYF 276
I ++ + + + S + + K+ S + A+ F+
Sbjct: 239 FPIDSILEKKPRRVKMYWLVGGELMSEWRRLDKLLSGEIDSEVRREAARMLAEAKMAFHE 298
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
+ + +++ L+A + + R + + G + Y + ++ G G+ P
Sbjct: 299 KLAAGVSVLSFALMAIPLGISVQRKE-TSANLGIALGLGVLYYLMTALIGWGGGQGMPFP 357
Query: 337 VAAALIPVILTISLSILILLQKEDG 361
IP L + + ++ + + G
Sbjct: 358 HLLYWIPNFLLQGIGLWLIYRLDHG 382
>gi|187734829|ref|YP_001876941.1| permease YjgP/YjgQ family protein [Akkermansia muciniphila ATCC
BAA-835]
gi|187424881|gb|ACD04160.1| permease YjgP/YjgQ family protein [Akkermansia muciniphila ATCC
BAA-835]
Length = 363
Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats.
Identities = 56/363 (15%), Positives = 128/363 (35%), Gaps = 20/363 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY + L T ++ L+ + +L + + IS +P
Sbjct: 2 KILDRYIARQLLGVTALGVMALSALLLLGNLFKELRPLLVENKAPISIVLEFIFQVIPFS 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ IP+ L ++V+ L +EL R G+S+W+L P + I L +
Sbjct: 62 LMFSIPWGFLTAVLLVYGRLASDNELTSMRMSGMSLWRLSAPAIAIGIALSGLCYWINID 121
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA ++ +L+ + K + + + + I K + + +
Sbjct: 122 IAPRAKQSISELLIKAASINPKGLLNEGQAITKFDNLE---IYIDKRVDD--VIHGMHIY 176
Query: 183 TIDKKNKIIHRKDADLAIIYND------KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
++ + + L + I ++ T +P+ ++
Sbjct: 177 QKADDKSPSVAMHSERVTMDFSPEKKILTLHLINPLITTQEEGSISQSVTMDEMPLSINL 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI----VIPLMLVAMTLIAA 292
+ S + + F +++ + + + + + T+F + L + LI
Sbjct: 237 DKSRSRRIKANRFTN--REIREALDTPGYLDKKQTTEFATELPRRASFSLACIVFALIGV 294
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG-KSGILLPVAAALIPVILTISLS 351
+++ +R A GI LY + I K+ +LP +P I+T++++
Sbjct: 295 PLAI-NTRRKDTSTGFALGILIA-SLYFLALIFADLSRKNDTMLPYILLWLPNIITVAVA 352
Query: 352 ILI 354
+ +
Sbjct: 353 LHL 355
>gi|296283030|ref|ZP_06861028.1| permease [Citromicrobium bathyomarinum JL354]
Length = 407
Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats.
Identities = 50/357 (14%), Positives = 121/357 (33%), Gaps = 17/357 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY F+ + + A L+ + + ++ + + + T +P
Sbjct: 7 LDRYIFRLTIVPMIGVFALAATLLMLEQMLKLFRFVSTEGG-PVGVVFQMLGTLLPDYAV 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IP L+ + F L +SEL + RA+G+ +LL ++ L ++ +
Sbjct: 66 LAIPLGLLLGTLFAFRQLALSSELDVMRAVGLGYGRLLRVPFAITLALMAVNAAIVFYVQ 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ +L + + + +++ + + ++ + I
Sbjct: 126 PVSKYYYEELQFDLRSGALGASIKVGEFTTLAD---RMALRIEESEDSGRKLKGI-FARI 181
Query: 185 DKKNKIIHRKDADLAIIYNDK-------VKLKKVVEYQ--YGRIPIDKNSTTLNIPIKMD 235
+ ++ A + ++L Q G P + T ++PI +
Sbjct: 182 NAEDGQTLSISAREGRFLSTSDNPDTIILRLSDGTIVQDPPGETPRVLSFTEHDLPIDLP 241
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA--ETQFYFLIVIPLMLVAMTLIAAS 293
++F + + Y + + + R + F + +V M++ M L+A +
Sbjct: 242 AIEQFRARGEAEREYILPELLRMGWSDTTTEAQRLGSQASFNYRMVELAMMLFMPLLAVA 301
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+++ RS + V + + + M+ F G + P P + L
Sbjct: 302 LAIPPKRS-TSALGVFVAVILVVAYHKVNQYMQDFAALGRVDPTLGLWGPFAIFAGL 357
>gi|218778207|ref|YP_002429525.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
AK-01]
gi|218759591|gb|ACL02057.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
AK-01]
Length = 398
Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/367 (14%), Positives = 135/367 (36%), Gaps = 19/367 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+++Y L LL ++ + + ++ + + + +L +P +
Sbjct: 6 IVFKYMLGEMLPPFGVTLLVFALIFLMTRMLQLTDYVVNF-RVGLGHVMMLLMYSMPFFL 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IP T++ ++ F ++ +E+ +A G S++ LL P + + T +
Sbjct: 65 IFVIPMSTMMAVLLTFLRMSSDNEITALKAAGWSLYSLLPPVLAFCTAAALLTASMSFIG 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G +L+ + + + +++ + + E+ I
Sbjct: 125 LPWGRMAAKELLIDVARQNVEIGLKERSFERTF---KNVVLYVGSVDVESRTLHHV-FIE 180
Query: 184 IDKKNKIIHRKDADLAII----YNDKVKLK-------KVVEYQYGRIPIDKNSTTLNIPI 232
+ ++ A I +D +L+ + + ++ +S N+ +
Sbjct: 181 DRRDKQLSSTIMASTGRIIPSDGDDIWQLRLNDGVIVRADRKKSSMFTVNFDSYDFNLNL 240
Query: 233 KMDGFQKFSE-QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ E F E++ + NK + + Y A + + IP + + L A
Sbjct: 241 GTALGARDGEKDEEEMYFKELLTFVKRYNKKDDRY-YLALLEVHKKFSIPFSCIVLGLAA 299
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+ + SRS + VA G+ + Y +++ FG++G P+ +P ++ ++
Sbjct: 300 VPLGI-VSRSARRSFGVALGLGLFLLYYLLLSAGWVFGEAGKYPPMIGMWVPNLVIGAMG 358
Query: 352 ILILLQK 358
L++
Sbjct: 359 GFSLVRM 365
>gi|242279362|ref|YP_002991491.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
2638]
gi|242122256|gb|ACS79952.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
2638]
Length = 386
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/371 (15%), Positives = 145/371 (39%), Gaps = 28/371 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L R FK + + G M L+ + L + + A L P
Sbjct: 2 KLLHRNIFKELISIFTLSISGFMGLILIGRLL-QFRDLFMGQSLGALEMAKLFMYLCPFF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLL-NPFVVGSILLGIFTVLVIN 121
+ + P T++ + F +N +E+ ++ G+S+++LL P + + G +
Sbjct: 61 LLMLTPIATMLSIFLTFLRMNADNEITALKSGGLSLYRLLPAPIIFCLLCTGADFYFSLY 120
Query: 122 PIATSGEKIGIDLIQQWKDN-------GDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
++ E L++ + G K+ + I + + ++
Sbjct: 121 GLSWGTENFRNALMEFARTQSQLAIQPGVFNKNFPGLVFYADGVDEKSGIM-RSVFVRDN 179
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID---KNSTTLNIP 231
+ T+ + +I R D + + + L+ YQ + + + + IP
Sbjct: 180 TRKGMTATIVAPLGEI--RTDPKMGRL---LIHLENGKIYQQEKDQLSVLKFKNYDVRIP 234
Query: 232 IK--MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN---YRAETQFYFLIVIPLMLVA 286
+ + G+ + S+ ++++ +++ + + + + +P+ +
Sbjct: 235 LANILKGYDVDELRPKEMSWKKLVRISRAGDRAGDIDPGFFKKVQVEVQKRLALPVACLV 294
Query: 287 MTLIAASVS--LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ + A ++ + Q +I++ G+F + YT++++ +FG+SG+L PV +P
Sbjct: 295 LGMFAVPIACIFRGLK-QQYGLIISMGLFL--VYYTMLSLGVTFGESGVLTPVIGLWLPN 351
Query: 345 ILTISLSILIL 355
I +S+++L
Sbjct: 352 ITFAIISVVLL 362
>gi|56708377|ref|YP_170273.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89256770|ref|YP_514132.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
holarctica LVS]
gi|110670847|ref|YP_667404.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis FSC198]
gi|115315161|ref|YP_763884.1| hypothetical protein FTH_1435 [Francisella tularensis subsp.
holarctica OSU18]
gi|167010911|ref|ZP_02275842.1| hypothetical protein Ftulh_09398 [Francisella tularensis subsp.
holarctica FSC200]
gi|187931970|ref|YP_001891955.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
mediasiatica FSC147]
gi|224457507|ref|ZP_03665980.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254371000|ref|ZP_04987003.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254875200|ref|ZP_05247910.1| permease yjgP/yjgQ family protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|56604869|emb|CAG45953.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89144601|emb|CAJ79920.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
holarctica LVS]
gi|110321180|emb|CAL09336.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis FSC198]
gi|115130060|gb|ABI83247.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica OSU18]
gi|151569241|gb|EDN34895.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis FSC033]
gi|187712879|gb|ACD31176.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254841199|gb|EET19635.1| permease yjgP/yjgQ family protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159996|gb|ADA79387.1| hypothetical protein NE061598_09765 [Francisella tularensis subsp.
tularensis NE061598]
Length = 353
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 62/370 (16%), Positives = 135/370 (36%), Gaps = 29/370 (7%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ + RY F+ + L + IL F+ + N S + ++P
Sbjct: 2 LLNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSN--NTANVSNFELIINTLIQLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ ++P +V ++ L SE+++ R+ G S Q+ ++ ++ + T++
Sbjct: 60 GILYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA ++ + + + W + + F+ I P N
Sbjct: 120 GYIAPILQRQVDTNMVTY--------NTHDLWFKTPDG----FMNIANIEPTNGKAYGIR 167
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + NK+ + A+ A ND + +I + +I I +
Sbjct: 168 KFMV-QDNKVREIRYAESATYINDA----SANVFNIRKIIFPASDGQKHIDIVTNMTNAV 222
Query: 241 SEQFASRSFYEII----------KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
S ++I +++ SN +F+ + PL L+ + L+
Sbjct: 223 WSNPLPISVAKVITINDNNYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILL 282
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A +S+ +RS+ + + G F GF + I I L P+ A P ++ + L
Sbjct: 283 AVPLSIGSTRSSTLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALIL 342
Query: 351 SILILLQKED 360
I + ++ ++
Sbjct: 343 LIYLFIKSKE 352
>gi|332297890|ref|YP_004439812.1| permease YjgP/YjgQ family protein [Treponema brennaborense DSM
12168]
gi|332180993|gb|AEE16681.1| permease YjgP/YjgQ family protein [Treponema brennaborense DSM
12168]
Length = 381
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 49/327 (14%), Positives = 106/327 (32%), Gaps = 23/327 (7%)
Query: 46 YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF 105
++ L + +P II Q PF TLV ++ + +E++I RA G S +L P
Sbjct: 57 VPLADVLKLISYSLPFIIAQSAPFATLVGFLMCLGRMMSDNEILILRAAGKSFAVILVPA 116
Query: 106 VVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
++ + + I + V + + G L + + + + + + IG
Sbjct: 117 LLLGLAISILSFFVNDYLLPLGTISYNKLYRSILMSDPSIELESNSIKR--TESATLVIG 174
Query: 166 AKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYND-------KVKLKKVVEYQYGR 218
D D + + A I N ++ + + +
Sbjct: 175 ----DVSGRTVSDLIFFDTDPQGT-RRVIVSGTADIVNSQNPDVLMQLDMDNARVLFFDK 229
Query: 219 IPIDKNSTTLNIPIKMDGFQKF---------SEQFASRSFYEIIKKMSFSNKSNIFHNYR 269
+M+ F + S +I+ M + +
Sbjct: 230 TEKRNYDMMSAEQTRMNVFTSSLFSSSAYTNPREMTSYDLRTMIRNMKTQQEKSSLQLNM 289
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
E ++Y +P + L+A +++ F + N I + G+F + + + ++FG
Sbjct: 290 YELEYYKKFSLPFGSLFFALLAMPIAILFGKHNGQTIGLIIGLFICVAYWAAMILGQTFG 349
Query: 330 KSGILLPVAAALIPVILTISLSILILL 356
L +P + + L
Sbjct: 350 IREGLSGFWTMWLPDLCVGAAGCAFYL 376
>gi|297624270|ref|YP_003705704.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
gi|297165450|gb|ADI15161.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
Length = 353
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 55/357 (15%), Positives = 118/357 (33%), Gaps = 18/357 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y + L + +L+ + L + + N ++ A L ++PL +
Sbjct: 6 LAGYLLRETAGLYLLGVAAFCLLLSIDTLTVWAGYLIQ-QNATLGVIARLMLYQLPLFLH 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + ++ L + SEL + A+G+ LL P + +L+ + +L +
Sbjct: 65 LSLPVAAVFAVLLATGRLAKDSELKAAYALGVPPLSLLWPLLGFGVLISVAALLNNGYLE 124
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWEDFTSIT 183
G+ +L+ + + ++ + I A +
Sbjct: 125 PRGQIAEDELVASFFNARPSAETQRDVSFRQEGGLYYAARIRADTFDRTRAELSGV--LV 182
Query: 184 IDKKNKIIHRKDADLAIIYN--DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ A + + L++V + G P + + TL ++ D S
Sbjct: 183 YGDDGTLYS---APYGTWDSEVNTWTLEEVEVLREGEAPRLEPTLTLPFTLQADAGASLS 239
Query: 242 --EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
E Y I+ + + + + V LIA ++ L
Sbjct: 240 AAENLTLSELYARIE----AGRRAGQSVRGDLFNLHRRLADASSAVIFVLIAGALGL-HL 294
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + I + + T+ +SF + G+L PV AA + + + + L
Sbjct: 295 R--GRSAGFGWTIVLLVCFFALWTLSESFFEQGVLSPVVAAWLTTGVVGLIGGALAL 349
>gi|297250818|ref|ZP_06934295.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
gi|296837906|gb|EFH21844.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
Length = 188
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 27/189 (14%), Positives = 76/189 (40%), Gaps = 11/189 (5%)
Query: 178 DFTSITIDKKNKIIHRKDADLAII-YNDKVKLKKVVEYQYGRIPID-----KNSTTLNIP 231
+ KN++ +A+ A++ + +LK + G ++ + S +++
Sbjct: 2 GIKIWQRNDKNELTQAAEAESAVLNTDGSWQLKNIRRSILGEDKVEVSTAAEESWPISVK 61
Query: 232 IKM-DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ D +Q + I+ + +++ + ++ +V P+ M L+
Sbjct: 62 RNLMDVLLVKPDQMSVGELTTYIRHLQNNSQ----NTQIYAIAWWRKLVYPVAAWVMALV 117
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A + + + +R + + GI G + + + G+ + P A ++P L L
Sbjct: 118 AFAFTPQTTRHGNMGLKLFGGICLGLLFHFAGRLFGFAGQLYGVPPFLAGILPTALFALL 177
Query: 351 SILILLQKE 359
++ ++ ++E
Sbjct: 178 AVRLIRKQE 186
>gi|134302362|ref|YP_001122331.1| YjgP/YjgQ permease [Francisella tularensis subsp. tularensis
WY96-3418]
gi|134050139|gb|ABO47210.1| putative permease YjgP/YjgQ family [Francisella tularensis subsp.
tularensis WY96-3418]
Length = 351
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 62/366 (16%), Positives = 134/366 (36%), Gaps = 29/366 (7%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ + L + IL F+ + N S + ++P I+
Sbjct: 4 IDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSN--NTANVSNFELIINTLIQLPGILY 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P +V ++ L SE+++ R+ G S Q+ ++ ++ + T++ IA
Sbjct: 62 TLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGYIA 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ + + + W + + F+ I P N +
Sbjct: 122 PILQRQVDTNMVTY--------NTHDLWFKTPDG----FMNIANIEPTNGKAYGIRKFMV 169
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ NK+ + A+ A ND + +I + +I I +
Sbjct: 170 -QDNKVREIRYAESATYINDA----SANVFNIRKIIFPASDGQKHIDIVTNMTNAVWSNP 224
Query: 245 ASRSFYEII----------KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
S ++I +++ SN +F+ + PL L+ + L+A +
Sbjct: 225 LPISVAKVITINDNNYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILLAVPL 284
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S+ +RS+ + + G F GF + I I L P+ A P ++ + L I +
Sbjct: 285 SIGSTRSSTLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYL 344
Query: 355 LLQKED 360
++ ++
Sbjct: 345 FIKSKE 350
>gi|269213541|ref|ZP_06158032.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
gi|269146393|gb|EEZ72811.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
Length = 182
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 74/179 (41%), Gaps = 5/179 (2%)
Query: 185 DKKNKIIHRKDADLAIIYN-DKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQKF 240
+ KN+++ +A+ A++ N +LK + G ++ ++ T I +K +
Sbjct: 3 NDKNELMQATEAESAVLNNDGSWQLKNIRRSTLGEDKVEVSTAAEETWPIAVKRNLMDVL 62
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ S E+ +S +N + ++ +V P+ M L+A + + + +R
Sbjct: 63 LVKPDQMSVGELTTYISHLENNNQ-NTQIYAIAWWRKLVYPIAAWVMALVAFAFTPQTTR 121
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + GI G + + + + + P A +P I L++ ++ ++E
Sbjct: 122 HGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPTIAFALLAVWLIRRQE 180
>gi|118497254|ref|YP_898304.1| membrane protein of unknown function [Francisella tularensis subsp.
novicida U112]
gi|118423160|gb|ABK89550.1| conserved membrane protein of unknown function [Francisella
novicida U112]
Length = 353
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/371 (15%), Positives = 136/371 (36%), Gaps = 31/371 (8%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ + RY F+ + L + IL F+ + N S + ++P
Sbjct: 2 LLNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSN--NTANVSNFELIINTLIQLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ ++P +V ++ L SE+++ R+ G S Q+ ++ ++ + T++
Sbjct: 60 GILYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA ++ + + + W + + F+ I P
Sbjct: 120 GYIAPILQRQVDTNMVTY--------NTHDLWFKTPDG----FMNIANIEPTKGKAYGIR 167
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK-----------VKLKKVVEYQYGRIPIDKNSTTLN 229
+ + NK+ + A+ A ND ++ + +
Sbjct: 168 KFMV-QDNKVREIRYAESATYINDASANVFNIRKIIFPASDGQKHIDIVTNMTNAVWSNP 226
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
IPI + ++ +F ++ M ++++ +F+ + PL L+ + L
Sbjct: 227 IPISVAKVITINDN-DYLNFSQLTSYMLSNSQA----KDSISLKFWQEVFQPLSLMILIL 281
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+A +S+ +RS+ + + G F GF + I I L P+ A P ++ +
Sbjct: 282 LAVPLSIGSTRSSTLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALI 341
Query: 350 LSILILLQKED 360
L I + ++ ++
Sbjct: 342 LLIYLFIKSKE 352
>gi|254369661|ref|ZP_04985671.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
holarctica FSC022]
gi|157122620|gb|EDO66749.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
holarctica FSC022]
Length = 353
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 62/370 (16%), Positives = 135/370 (36%), Gaps = 29/370 (7%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ + RY F+ + L + IL F+ + N S + ++P
Sbjct: 2 LLNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSN--NTANVSNFELIINTLIQLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ ++P +V ++ L SE+++ R+ G S Q+ ++ ++ + T++
Sbjct: 60 GILYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA ++ + + + W + + F+ I P N
Sbjct: 120 GYIAPILQRQVDTNMVTY--------NTHDLWFKTPDG----FMNIANIEPTNGKAYGIR 167
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + NK+ + A+ A ND + +I + +I I +
Sbjct: 168 KFMV-QDNKVREIRYAESATYINDA----SANVFNIRKIIFPASDGQKHIDIVTNMTNAV 222
Query: 241 SEQFASRSFYEII----------KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
S ++I +++ SN +F+ + PL L+ + L+
Sbjct: 223 WSNPLPISVAKVITINDNNYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILL 282
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A +S+ +RS+ + + G F GF + I I L P+ A P ++ + L
Sbjct: 283 AVPLSIGSTRSSTLILKLLIGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALIL 342
Query: 351 SILILLQKED 360
I + ++ ++
Sbjct: 343 LIYLFIKSKE 352
>gi|254374089|ref|ZP_04989571.1| hypothetical protein FTDG_00250 [Francisella novicida GA99-3548]
gi|151571809|gb|EDN37463.1| hypothetical protein FTDG_00250 [Francisella novicida GA99-3548]
Length = 353
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/371 (15%), Positives = 136/371 (36%), Gaps = 31/371 (8%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ + RY F+ + L + IL F+ + N S + ++P
Sbjct: 2 LLNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSN--NTANVSNFELIINTLIQLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ ++P +V ++ L SE+++ R+ G S Q+ ++ ++ + T++
Sbjct: 60 GILYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTIVFG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA ++ + + + W + + F+ I P
Sbjct: 120 GYIAPILQRQVDTNMVTY--------NTHDLWFKTPDG----FMNIANIEPTKGKAYGIR 167
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK-----------VKLKKVVEYQYGRIPIDKNSTTLN 229
+ + NK+ + A+ A ND ++ + +
Sbjct: 168 KFMV-QDNKVREIRYAESATYINDASANVFNIRKIIFPASDGQKHIDIVTNMTNAVWSNP 226
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
IPI + ++ +F ++ M ++++ +F+ + PL L+ + L
Sbjct: 227 IPISVAKVITINDN-DYLNFSQLTSYMLSNSQA----KDSISLKFWQEVFQPLSLMILIL 281
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+A +S+ +RS+ + + G F GF + I I L P+ A P ++ +
Sbjct: 282 LAVPLSIGSTRSSTLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALI 341
Query: 350 LSILILLQKED 360
L I + ++ ++
Sbjct: 342 LLIYLFIKSKE 352
>gi|32491206|ref|NP_871460.1| hypothetical protein WGLp457 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166413|dbj|BAC24603.1| yjgQ [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 352
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 68/335 (20%), Positives = 132/335 (39%), Gaps = 22/335 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL RY KTT+ L + + +I +E + + SI VP
Sbjct: 1 MLFILDRYIRSLIFKTTIVALFILLTISGIIKFSEKIQSI-DNSYISIFYLISTILLSVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I++ L+ + L + EL+I + GIS ++ + I+ +++
Sbjct: 60 KDIEEFFNISILIGILWSIGILEKNRELIIIESSGISRIKICILIIKTIIIFLFIYSIIL 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I I + ++ N ++ W++I+N FI KKI+ + I +
Sbjct: 120 EWIIP----IEKKIKSKYFFN-FISENKKNLWIKINNN----FILIKKIVDFDFI-QGIY 169
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-------DKNSTTLNIPIK 233
+K N+I + K + AI N + + V ++ + T + P +
Sbjct: 170 IYEFNKFNEIKYIKSSKYAIFKNKEWIMFDVKTIKFNNNKKIEINSFDKQIYTNIITPKE 229
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
++ +E+ + Y IK + K+N+++ + F+ I P+ ++ +T+I
Sbjct: 230 INLILFPTEELSISELYFYIKFLK---KNNLYYKKQYLV-FWNKIFSPISILIITIIILQ 285
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
+ S +I V + I GF+ Y I I S
Sbjct: 286 LLFGILYSYDIKIKVVFVISLGFIFYFINNIFNSL 320
>gi|320335464|ref|YP_004172175.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
21211]
gi|319756753|gb|ADV68510.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
21211]
Length = 379
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/389 (12%), Positives = 121/389 (31%), Gaps = 47/389 (12%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + L L G + ++ L N +VP +
Sbjct: 2 ILTRYVTRELLPPLLA---GTALFTAILSFGYFFVSSQWLKNVPPGLILQWIGAQVPDTL 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+++P +++ +V F L EL+ ++ GIS+ ++ P V + L+ + V + +
Sbjct: 59 VKVLPMGVVLMVVVAFGRLATERELIAVQSGGISLGRVARPATVIAALVAVLAVWLSLWV 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A L G + ++ + +
Sbjct: 119 APRLNVEARGLYWDTLTGGGLTTLSG----RTTDLGGGLTLYLGGYDSATRRMTGVRVQQ 174
Query: 184 IDKKN-KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM-------- 234
DK N ++ A N++++L+ Y+ + + P K+
Sbjct: 175 WDKDNAELGTLVFARDGTFENNQLQLRDYAVYRVNFAAVRDLEAVSDDPSKLRSAIGDVF 234
Query: 235 ----------------------DGFQKFSEQFASRS--FYEIIKKMSFSNKSNIFHNYRA 270
+ ++++ + S + ++I K++ A
Sbjct: 235 TAVNTPPNKDATLTLDTGLSRKETLARYADAIGADSEGWPQLITKLTAPGVKAA-DRQAA 293
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
+ +P+ + + L A +L + R+ + + Y +
Sbjct: 294 RVDLNRKLALPIGNLVLVLAALPFALRYGRT--LGTSLGIALLIAVAYYLL--FFVGIAV 349
Query: 331 SGILL--PVAAALIPVILTISLSILILLQ 357
+ +L P + ++ +L + +L +
Sbjct: 350 ANMLPALPELGVWLANLVFAALGLTLLRR 378
>gi|254372627|ref|ZP_04988116.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570354|gb|EDN36008.1| permease YjgP/YjgQ family protein [Francisella novicida GA99-3549]
Length = 353
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/371 (15%), Positives = 136/371 (36%), Gaps = 31/371 (8%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ + RY F+ + L + IL F+ + N S + ++P
Sbjct: 2 LLNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSN--NTANVSNFELIINTLIQLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ ++P +V ++ L SE+++ R+ G S Q+ ++ ++ + T++
Sbjct: 60 GILYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA ++ + + + W + + F+ I P
Sbjct: 120 GYIAPILQRQVDTNMVTY--------NTHDLWFKTPDG----FMNISNIEPTQGKAYGIR 167
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK-----------VKLKKVVEYQYGRIPIDKNSTTLN 229
+ + NK+ + A+ A ND ++ + +
Sbjct: 168 KFMV-QDNKVREIRYAESATYINDASANVFNIRKIIFPASDGQKHIDIVTNMTNAVWSNP 226
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
IPI + ++ +F ++ M ++++ +F+ + PL L+ + L
Sbjct: 227 IPISVAKVITINDN-DYLNFSQLTSYMLSNSQA----KDSISLKFWQEVFQPLSLMILIL 281
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+A +S+ +RS+ + + G F GF + I I L P+ A P ++ +
Sbjct: 282 LAVPLSIGSTRSSTLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALI 341
Query: 350 LSILILLQKED 360
L I + ++ ++
Sbjct: 342 LLIYLFIKSKE 352
>gi|115379865|ref|ZP_01466928.1| hypothetical protein STIAU_7243 [Stigmatella aurantiaca DW4/3-1]
gi|115363124|gb|EAU62296.1| hypothetical protein STIAU_7243 [Stigmatella aurantiaca DW4/3-1]
Length = 315
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/284 (14%), Positives = 104/284 (36%), Gaps = 9/284 (3%)
Query: 81 NLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKD 140
L + E+ RA+ L P ++ + + + + ++ Q +
Sbjct: 21 TLRKRGEVTALRALTFGPASLYLPVGAVALAACLGLIAFDERVVAQASRRVDEITTQRFN 80
Query: 141 NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAI 200
+ P + F+ + + D +T+ K+ R DAD +
Sbjct: 81 RWGDWRLYYTPKQWFRRGEHVFFLRSGSAQEG---FRDVAILTLTADFKLARRLDADTMV 137
Query: 201 -IYNDKVKLKKVVEYQY---GRIPI-DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKK 255
+ ++ +L VVE + GR + ++ + F + E+ ++
Sbjct: 138 PLEGNRWRLTGVVERSFSPDGRTAVSAAPEAEYDLGVPARSFLIRPGRPEQMRLPELREQ 197
Query: 256 MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG 315
+S + + + E Y P+ + L+A ++L +R + + G+
Sbjct: 198 IS-ARTEVGLDSRQYELALYNRFAYPMAGLPAALVAVGLALRPNRKGHLTVAIVEGLLIA 256
Query: 316 FMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
++ +I + K+ + + P AA +P + + ++ ++ L++E
Sbjct: 257 MAMWGLIVVSKTLVTTERMAPGLAAWLPSGVLVVVATVLWLRRE 300
>gi|119471263|ref|ZP_01613766.1| hypothetical protein ATW7_11365 [Alteromonadales bacterium TW-7]
gi|119445729|gb|EAW27012.1| hypothetical protein ATW7_11365 [Alteromonadales bacterium TW-7]
Length = 370
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 54/365 (14%), Positives = 130/365 (35%), Gaps = 26/365 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+++RY LK+ + L M + L I E + + A ++P +
Sbjct: 2 LIFRYLTAEVLKSQVAVFLTLMTIFLSQKLVVILGDASE-GSIPAQLVLSMIALKLPQLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + I+ + + SE+ + +A G+S W ++ ++ S L + + +
Sbjct: 61 SLILPLSIFLGIILAYSRIYADSEMTVLKACGVSEWYVVRVTLISSAGLALLAGALTMYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L +Q K + + + N + +FI I
Sbjct: 121 APWASEQEYQLKEQAKADAGLSALRAGRFQETGNEKAVVFIH--NIENGGKELNKVFVAQ 178
Query: 184 I--DKKNKIIHRKDAD-----LAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIK 233
+ +++ A+ A ++ L Y+ N T ++ I+
Sbjct: 179 LPNSDNDELARLVYAEQGVVIEAQNGEQQLVLTDGKRYETDATTPALNLTEFDGYSVQIR 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + +++ + + Q+ + I IPL + +TL+A
Sbjct: 239 EQEIEHQRRKLEAVPTNQLL----------AINTPESIAQWQWRIAIPLSIPLLTLLAVP 288
Query: 294 VSLEFSRSNQPRIIV-AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+S+ R + +V A ++ G + ++ K + G + P + + +
Sbjct: 289 LSVVNPRQGKFAKLVPAISLYLG--YFILLNAAKFAIEDGKIPPSIGLWWIHLSALFIGG 346
Query: 353 LILLQ 357
L++++
Sbjct: 347 LLIIK 351
>gi|291296584|ref|YP_003507982.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
gi|290471543|gb|ADD28962.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
Length = 377
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/378 (14%), Positives = 124/378 (32%), Gaps = 38/378 (10%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + F L + +I + + + + +S A +VP
Sbjct: 4 LDRYILRE-AWPVFLFGLALYVGFGLI--SNLLPRAQWMGTAELSSILKWLALQVPYATV 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +P L+ ++ F L R +EL++ +A GIS+ + PF++G +LL F++ + +
Sbjct: 61 QAMPIAGLLAVMLAFGRLARENELLVMQAGGISVLRTARPFLLGGLLLSGFSLALSEWVV 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + W + ++ + + + + P ++
Sbjct: 121 PWANRATALVY--WNELIPERTPQFNLVGRELTV-GEYILRYEGFDPAKDEFQRVRLERW 177
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG----RIPIDKNSTTLNIPIKMDGFQKF 240
+N+ + A A + ++ L+ + +P + ++ +
Sbjct: 178 --QNQTMTVILAQTARLQGQRIVLRDYRVFTLDFAQLPLPEFASLEQAEAGLQQIFRAQN 235
Query: 241 SEQFA---SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP---------------- 281
Q + + + F ++++ + P
Sbjct: 236 IGQPGAELTVRLSRSREDLEVQYAGGGFEVPVPLSEWWRKLQDPRTPPRELREAKAQWHA 295
Query: 282 ----LMLVAMTL-IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
+ M L +A V++ R+ P + + Y + K SG L P
Sbjct: 296 AIALALANLMVLVLALPVAVR--RATSPGTALGLALVLTIAYYVAFSAGKVLALSGPLPP 353
Query: 337 VAAALIPVILTISLSILI 354
AA +L +++ +
Sbjct: 354 ELAAWGANLLGVAVGYGL 371
>gi|297569343|ref|YP_003690687.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
AHT2]
gi|296925258|gb|ADH86068.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
AHT2]
Length = 398
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 52/355 (14%), Positives = 130/355 (36%), Gaps = 23/355 (6%)
Query: 12 YYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFIT 71
L LL ++F+ L + +++ L + A + P ++ +P
Sbjct: 15 EMLAPFFAALLVINAILFLGRLIPLLDEIFAL-GLGLGDFARICLYMSPRLLLFSLPMAC 73
Query: 72 LVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIG 131
++ I+ F +N E++ +A GI ++++L P ++ + + T++ +
Sbjct: 74 MMGVIIAFTRMNGDYEIMALKASGIGLYRMLPPVLLLGAVTALLTLVTATVLIPKSTIAT 133
Query: 132 IDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII 191
L W K + + P S + + +++ P+N W + + +
Sbjct: 134 NQLF--WHLAKTKVEQGVRPN-TFSEGLPQVVLYVEEVTPDNA-WRGVYLSDLRDPDHPV 189
Query: 192 H------RKDADLA------IIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ AD A +++ + + V Q I L IP+
Sbjct: 190 TVMAPDGQLQADTAGSRIMLTLHDG--TMHRAV--QEKTQTIHFGRYHLEIPLTPPAAFA 245
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ E+ + + + + +++ +V+P + ++ +++L S
Sbjct: 246 DRTGRHGMTQDELRQTAAKLGPEHSRYKT-YLIEYHQRLVLPAGAFILAMLGITLTL-LS 303
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R+ + V G+ S Y ++T K+ + G L A +P ++ ++ +
Sbjct: 304 RTPHQALGVPLGLLSFIAYYVLLTAAKTLAEGGQLPLGPAMWLPNLVFAIFTVYL 358
>gi|330836571|ref|YP_004411212.1| permease YjgP/YjgQ family protein [Spirochaeta coccoides DSM 17374]
gi|329748474|gb|AEC01830.1| permease YjgP/YjgQ family protein [Spirochaeta coccoides DSM 17374]
Length = 363
Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 51/369 (13%), Positives = 119/369 (32%), Gaps = 25/369 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY + +L L L +L+ +DL + + L +P
Sbjct: 2 KILDRYIMRSFLTVFLSALGICTLLLVAVDLFTNLDSYAKN-EVPFFAILRLTVLYIPDA 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +I + + ++ ++EL+ GI +++ P + I + + T+
Sbjct: 61 VSLVISPAVIFSATLTLALIHSSNELIPIFCAGIPYIRVIIPMMAVGICVSMTTLAATEY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I +++ ++ + + + I ++ + + AK+ + I
Sbjct: 121 IVIPSRVNRVEVQTEYTGSQTSKDNRNITFV---DASGRFVLHAKRYDATRQRIMNMVLI 177
Query: 183 TID-KKNKIIHRKDADLAIIY--NDKVKLKKVVE--YQYGRIPIDKNSTTLNIPIKMDGF 237
D ++ R A +A + L V + G + + TL I +D
Sbjct: 178 ERDGPGGRMTGRTSAGMAQWDETERRWILSDVSIQNFTEGDTVLSFHEDTLMSDI-LDIE 236
Query: 238 QKFSEQFAS--------RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ + + + + Y + P +L+
Sbjct: 237 PGLFSYLGTDIKNMDRKTALWYLDNMKGLDPYQWATAATDYYERAYSFL-TPFILMI--- 292
Query: 290 IAASVSLEFS-RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+ S+ + + N + I + Y + K ++ P+ +P+ L I
Sbjct: 293 --IACSMNYQYKKNVLLFSILTSIGIAIVFYVTQLVTLLLAKQYVISPLTGVFLPLGLMI 350
Query: 349 SLSILILLQ 357
+LS L+
Sbjct: 351 ALSSAFFLR 359
>gi|262341159|ref|YP_003284014.1| putative YjgP/YjgQ family permease [Blattabacterium sp. (Blattella
germanica) str. Bge]
gi|262272496|gb|ACY40404.1| putative YjgP/YjgQ family permease [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 359
Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 55/362 (15%), Positives = 125/362 (34%), Gaps = 21/362 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY + L T ++ + +L VID+++ +++ +
Sbjct: 2 KILDRYIIRNLLITFIFITVSLQLLSVVIDISQRMHRLENNQGSIKKALIFYYPYWSIWL 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV--- 119
P + I L SE+ + GIS+ +L+ P+++ +I++G ++L+
Sbjct: 62 ANTFSPISVFLSVIFFTSKLENNSEITAILSSGISLNRLIVPYLISAIMIGTVSLLINYY 121
Query: 120 INPIATSGEKI--GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
P+A + L+ N ++ I + + IFI + + +I +
Sbjct: 122 FLPMANKKKNQFHYQYLLSSRYKNKYEKNQTIS---TQISKNEYIFI--RNFSRKKNIGK 176
Query: 178 DFTSITIDKKNKIIHRKDADL--AIIYNDKVKLKKVVEYQYGR---IPIDKNSTTLNIPI 232
+F + K K+I+ + L E + I +
Sbjct: 177 EFVYQKFNGK-KLIYILKSKNIFGYKKKKIYVLSDYRETTIKKNYDFFIKGDYKIKKFSF 235
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + + YE+ K + K+ + ++Y +P T++
Sbjct: 236 TPEELLPEEYIAETMNIYELKKFIDIEKKN--RNVNIHLNEYYQRTSLPFSTFIFTILGF 293
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S+S + S + + GI + I K + + + +P +L +++
Sbjct: 294 SLSSKKS---ETGYNIILGIVLAVFYIFFMEITKIYSTKDTIPSYLSVWLPNVLLGIIAL 350
Query: 353 LI 354
Sbjct: 351 FF 352
>gi|157960739|ref|YP_001500773.1| permease YjgP/YjgQ family protein [Shewanella pealeana ATCC 700345]
gi|157845739|gb|ABV86238.1| permease YjgP/YjgQ family protein [Shewanella pealeana ATCC 700345]
Length = 371
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 50/362 (13%), Positives = 134/362 (37%), Gaps = 24/362 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + K + LL + + + + ++ S L +P +
Sbjct: 2 IVFRYLIREVFKAQIAVLLVLLAIFISQHFVRVLADASD-GDFPASLVMTLLGLNMPFLT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+VI +GIS W + ++ +++ +FT + +
Sbjct: 61 VLVLPLSLFLGILLAHGRMYAENEMVIFHGVGISEWYITRITLLLAVINMVFTAFLSIYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E+ +++ + + ++P + ++I +N + + F +
Sbjct: 121 APWAEERQNQVLEHAQSEAGLAALTQGRF--QTSPNGRAVLFVERIGRDNQLDKVFVAQL 178
Query: 184 IDKKNK--IIHRKDADLA-----IIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIK 233
D ++ + + A I +++L+ V+YQ +D + IK
Sbjct: 179 PDPDDETGVANVVVARTGKVVEDEIGGQRLQLEDGVQYQGNPKRVDYQVVEFGGYQMQIK 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + ++ +++ + A +F++ + IPL + MTLIA
Sbjct: 239 EQAVDERRRKLSAMPIGQLMD----------IDSPEATAEFHWRLAIPLAIPLMTLIAVP 288
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ + + I + ++ + + G++ +++ IL
Sbjct: 289 MA-RVNNRQGKFAKMFPAILLYLGYFGLMVAGRKSLEDGVIPQYLGMWWIHASALAIGIL 347
Query: 354 IL 355
+L
Sbjct: 348 LL 349
>gi|94984156|ref|YP_603520.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
gi|94554437|gb|ABF44351.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
Length = 352
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 51/355 (14%), Positives = 104/355 (29%), Gaps = 14/355 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P L R + L+ + +++ + D + L + + + P
Sbjct: 5 PFTLTRSVLREVLRWY-AAGVALFLILQLTDALSTTVGVLLLYHATPLEALSVFGAIAPD 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ + + ++ F L SEL A G+S +L+ P V +L+G+ +
Sbjct: 64 KLNRSLVLAVPFAVLLTFGRLQGDSELKAMFAAGVSPLRLVWPLAVPFVLVGVLAFVNTG 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G S P +F +
Sbjct: 124 YVVPGGLARWDRAWYTIYGTVPPAPSQDNY---TFAPPGALFYAGRVRNGAESGVAQLDG 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ I++ + + A I + + G+ P + + L P + D +
Sbjct: 181 VLIERGGETVT---AQSGIWDTQARTWTVSDAWITRPGQDP-RQVAGPLVFP-QTDTLRP 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
A S + +++ + E Q P + L+A V L
Sbjct: 236 PQPPAAQVSTPVLRARLAADEYATPEQRRVDEHQLATRYADPCTPIVFALVAGVVGLLLR 295
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I + Y + T + G L P AA +P I+ ++ +
Sbjct: 296 NRAGAFAATLLVIL---VFYVLWTTAPQLARVGALPPTLAAWLPNIVFFLVAAAL 347
>gi|224418390|ref|ZP_03656396.1| permease [Helicobacter canadensis MIT 98-5491]
gi|253827708|ref|ZP_04870593.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313141921|ref|ZP_07804114.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|253511114|gb|EES89773.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313130952|gb|EFR48569.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
Length = 355
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 64/367 (17%), Positives = 133/367 (36%), Gaps = 33/367 (8%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY YLK + +IDL + +++ + S + +L
Sbjct: 5 SRYIISLYLKYFFILFVSLECFFVLIDLVKYLDELPQ----SANLIVLLIFYDFVYASNF 60
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN-PIA 124
I+P ++ IV+ ++ R S+ A+G S ++ P + S L+ + VL+ P A
Sbjct: 61 ILPLSLVLAQIVLSISMLRNSQFTAFLALGYSKARIFLPIFIVSFLITLLFVLLNATPFA 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ E++ + + + + + + +I +KI P + E+ +
Sbjct: 121 YAKERVDLIIERGYLGSYKNDLFIKY---------NENYIYFEKIFPLLKMAENVKVYEV 171
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG----------RIPIDKNSTTLNIPIKM 234
K ++I +A A DK KL+ +I K TL K
Sbjct: 172 FNK-QVIKIIEAPKATFIEDKWKLEDARITTLDSNLEVGKNPLKIEEQKTYETLE-GFKP 229
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML-VAMTLIA-- 291
E+ S S + ++ + K + + + Y LI P + M +A
Sbjct: 230 KILDNIYEKQGSVSIVDALEAIWLL-KKQGVNTQKLRSSLYALIFFPFFAPLVMVCLARF 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S ++ + + G+ + + + SG L P + ++P+ + +S
Sbjct: 289 TPNSNRYANIGGITLGMILGVLI--VWGVFFSFSR-LSMSGFLPPEVSIILPIGILGLVS 345
Query: 352 ILILLQK 358
+ + L+
Sbjct: 346 LWLFLRL 352
>gi|256027205|ref|ZP_05441039.1| hypothetical protein PrD11_04296 [Fusobacterium sp. D11]
gi|260494013|ref|ZP_05814144.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
gi|289765182|ref|ZP_06524560.1| conserved hypothetical protein [Fusobacterium sp. D11]
gi|260198159|gb|EEW95675.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
gi|289716737|gb|EFD80749.1| conserved hypothetical protein [Fusobacterium sp. D11]
Length = 359
Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats.
Identities = 51/350 (14%), Positives = 117/350 (33%), Gaps = 17/350 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y LK + + +F++D+ + + S+ L + +P I
Sbjct: 2 KIINKYILDE-LKGPIILAVFVFTFIFLLDIVVAMMEHIIVKGISVFDVLRLLSFYIPPI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q IP + ++ F +R SE V + G+SI +L P + +I IF V +
Sbjct: 61 LTQTIPIGMFLGIMICFTKFSRNSESVAMVSAGMSIRDILKPILAIAIGAAIFIVFLQES 120
Query: 123 IATSG--EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I + + +++ + K I N I K+ +
Sbjct: 121 IIPRSFIKLKYVGTKIAYENPVFQLKEKTF----IDNLDGYS-IYVDKVDSDGKAKNIIG 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKMD 235
K+K + A + + +K+ + + + +
Sbjct: 176 FEKSKDKSKFPLVLTGEEAFWKDSAIIVKESQFVSFDETGKKNLIGTFDENRIVLKPNFQ 235
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + S E+I+ + + + + + + + + + V + +I +S
Sbjct: 236 ELSIKIKDVEALSITELIRGLKKIEATEVI---KYKIEIFRKLALVFSTVPLAVIGFCLS 292
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
L R ++ + + F + + +G L P A P +
Sbjct: 293 LGHHRISKKYSFIL-AMIIVFAYIIFLNVGIVMATAGKLNPFIATWTPNV 341
>gi|153822424|ref|ZP_01975091.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|126520067|gb|EAZ77290.1| conserved hypothetical protein [Vibrio cholerae B33]
Length = 164
Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 1/158 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL Y + + TT L+ + L +I E ++GE +Y + + + +P
Sbjct: 1 MFKILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGE-GSYDLLQALLFVVLSIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ P L+ ++ L +SELV+ +A G S + + +I L I L+
Sbjct: 60 RDVEMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP 158
A +K+ D+ G W + +N
Sbjct: 120 EWGAPQAQKMARDMRAFATSGGAIMSVRTGVWARDAND 157
>gi|54113817|gb|AAV29542.1| NT02FT0415 [synthetic construct]
Length = 353
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 60/355 (16%), Positives = 126/355 (35%), Gaps = 29/355 (8%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ + RY F+ + L + IL F+ + N S + ++P
Sbjct: 2 LLNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSN--NTANVSNFELIINTLIQLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ ++P +V ++ L SE+++ R+ G S Q+ ++ ++ + T++
Sbjct: 60 GILYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA ++ + + + W + + F+ I P N
Sbjct: 120 GYIAPILQRQVDTNMVTY--------NTHDLWFKTPDG----FMNIANIEPTNGKAYGIR 167
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + NK+ + A+ A ND + +I + +I I +
Sbjct: 168 KFMV-QDNKVREIRYAESATYINDA----SANVFNIRKIIFPASDGQKHIDIVTNMTNAV 222
Query: 241 SEQFASRSFYEII----------KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
S ++I +++ SN +F+ + PL L+ + L+
Sbjct: 223 WSNPLPISVAKVITINDNNYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLSLMILILL 282
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
A +S+ +RS+ + + G F GF + I I L P+ A P +
Sbjct: 283 AVPLSIGSTRSSTLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTV 337
>gi|332704119|ref|ZP_08424207.1| permease YjgP/YjgQ family protein [Desulfovibrio africanus str.
Walvis Bay]
gi|332554268|gb|EGJ51312.1| permease YjgP/YjgQ family protein [Desulfovibrio africanus str.
Walvis Bay]
Length = 396
Score = 104 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/354 (13%), Positives = 122/354 (34%), Gaps = 19/354 (5%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
L T LG+++ + +I ++ + + L P +Q ++P ++
Sbjct: 19 LLLTFIICLGSLLTLILIGRMLQLKELFLGQSLGVMEIGRLFFYLSPFFLQLLMPISCML 78
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
+ F ++ EL+ +A G+S+++LL V+ L + + V + G
Sbjct: 79 AIFLTFLRISSDRELIALKAGGVSLYKLLPSPVLFCCLCCVANLAVAFWGISWGMDNFRA 138
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
+ ++ N + +I ++ + I A++ P N + + ++
Sbjct: 139 EVLEFARN---RTQIMIQPGTFNSDFPGLTIFAEQYDPGNKEMRLI-FVQDSRGDETSAT 194
Query: 194 KDADLAIIYND------KVKLKKVVEYQYGRIPIDK--------NSTTLNIPIKMDGFQK 239
A+ + D + L Y+ + + N +
Sbjct: 195 IVAEKGRVVTDKERGRLQFLLNDGAIYRTAKDQVHTLKFVSYLVNLDIWKTFNAEQLSET 254
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + + + + K + + + + +P+ + + L A + F
Sbjct: 255 RPREMSIMNLRRLAADPDLAKKRDEDYVRKVNVEIQKRYTLPVACLVLGLFALPFACSFQ 314
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + V + + Y++ +I S G+SG L P +P ++ +I
Sbjct: 315 -GVKQYVGVLMALGMFIVYYSLYSISISLGESGFLAPWIGLWLPNVIFFVSAIF 367
>gi|297620917|ref|YP_003709054.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
86-1044]
gi|297376218|gb|ADI38048.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
86-1044]
Length = 359
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 56/358 (15%), Positives = 116/358 (32%), Gaps = 1/358 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ I RYF K LKT + L +ID S A
Sbjct: 2 LTKIWERYFIKETLKTFFFISFCFYGLYVLIDYASHSGARHHQSMMEWSELIKFYANEWI 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L ++PF ++ I +LN +ELV +A GIS+ ++L PF+ +L +
Sbjct: 62 LRADVLVPFALMIATIRTLCDLNIHNELVALQASGISLKKILRPFIFLGLLFTLLIYANT 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + L Q + + K+ + + E ++ +
Sbjct: 122 EFLLPNAMAASRHLRNQKEIQKN-NKNKKFFVQHVGLKDGSTLLYQHYNFAERSFFDAYW 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ D+ + H + +++ + +I ++ + +
Sbjct: 181 VKSFDEIWRFQHLSPYEQPPKGIGVGHFQRMPDNTLHKIESFESRSFPEMKFNQKILLDT 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S + K++ S + F+ +P + + A + + R
Sbjct: 241 LTPSRELSLSTLWKRLPHSKEIESEKEAEFAASFFHKSALPWLCFFAVIAPAPFCVRYGR 300
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
S+ I + +F Y I+ + +L P A +P +L S ++ L +
Sbjct: 301 SHPIFFIYSLSLFFLVGSYLILNAALIISERQVLSPEVAIGVPFMLFSSTTLYRFLYR 358
>gi|317153285|ref|YP_004121333.1| permease YjgP/YjgQ family protein [Desulfovibrio aespoeensis
Aspo-2]
gi|316943536|gb|ADU62587.1| permease YjgP/YjgQ family protein [Desulfovibrio aespoeensis
Aspo-2]
Length = 388
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 53/365 (14%), Positives = 132/365 (36%), Gaps = 20/365 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L R FK LK + + L+ +I + N L P
Sbjct: 2 KLLHRQIFKELLKLFGLTVACLLGLI-LIGRMLQLRSLFLSQNIGFFNILQLFFYLTPFF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I P T++ + F ++ +EL +A G+S++++L + +L +FT +
Sbjct: 61 LLLITPIATMLSVFLTFLRMSTDNELTALKANGVSLYRMLPAPIAFCVLCTLFTFFISMW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
G + + Q+ + + + + I A ++ + + F +
Sbjct: 121 GLAWGMDMFKTSLYQFARSHSRFALQPGVFNKEFPG---ITFYAHQVDNDTGELK-FVFV 176
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST-------TLNIPIKMD 235
+ A A I + + + + GRI + ++ + +
Sbjct: 177 RDQSISGASVVVVAPEARIVSSPKTAEVHIVFNKGRIYRQSGEDINILRFGSYSVRLDLG 236
Query: 236 GF-------QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
++ ++ + EI S + + + +T++Y + +PL + +
Sbjct: 237 KLLGDFSFSEEKAKDMTFAALREIRNDPSIAPQQTAQFLRKVDTEYYKRLTLPLGCLILG 296
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+ A ++ R + + + + + Y++ ++ S G++G + PV P IL +
Sbjct: 297 MFAIPIA-YVFRGLRQQYGLLLSMGLFLLYYSMFSLSVSLGEAGAIAPVYGLWAPNILYV 355
Query: 349 SLSIL 353
+++
Sbjct: 356 LVAVF 360
>gi|88859092|ref|ZP_01133733.1| hypothetical protein PTD2_08809 [Pseudoalteromonas tunicata D2]
gi|88819318|gb|EAR29132.1| hypothetical protein PTD2_08809 [Pseudoalteromonas tunicata D2]
Length = 348
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 53/337 (15%), Positives = 120/337 (35%), Gaps = 12/337 (3%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
M + I + + + + A ++P + I+P + I+ + +
Sbjct: 1 MTIFVSEKFVRILTEATD-GSLPAKLIISMLALKLPQLASFILPLSIFLGIILAYSRIYA 59
Query: 85 TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDK 144
SE+ + +A G+S W ++ +V S +L +F + +A + L ++ K
Sbjct: 60 DSEMTVFKACGVSEWYVVRVTLVSSFVLALFAGALTLVVAPWASEQEYRLEEKAKAESGL 119
Query: 145 QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN-KIIHRK-DADLAIIY 202
+ Q N + +FI I + + R A I+
Sbjct: 120 FSLRAGRFQQTGNEKAVVFIHD--INQGGTELNKVFVAQFSENEKRPQARIVYAQHGIVE 177
Query: 203 NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS 262
+++ D S L K+ F + Q ++ +K+ + S
Sbjct: 178 EGASGEQQLKLAAGKHYETDGISKEL----KVTEFSGYQVQIQEQAIEHQRRKLEAISSS 233
Query: 263 NIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
+ + A QF + + IPL ++ +T IA +S R + +V +F + +
Sbjct: 234 ALLQMNTADAAAQFQWRLAIPLSILILTFIAVPLSEVNPRQGKFAKLVPAIVFY-LIYFI 292
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
++ K + G + + + + +L++L+
Sbjct: 293 LLNGAKFAIEDGQIPVGLGLWWIHLTALFIGMLLILR 329
>gi|149186433|ref|ZP_01864746.1| predicted permease [Erythrobacter sp. SD-21]
gi|148830022|gb|EDL48460.1| predicted permease [Erythrobacter sp. SD-21]
Length = 409
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 56/364 (15%), Positives = 136/364 (37%), Gaps = 17/364 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY + + + + A L+ + + + + + + + + AT +P
Sbjct: 8 IDRYIARLVIVPMVGVFVLAASLLVLDKMLRLLDFVA-VEGGPVGVVFKMLATLLPEYAS 66
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IP L+ ++ F L TSEL + RA+G+S +LL + + +L V ++ I
Sbjct: 67 LAIPLGLLLGILLAFRKLATTSELDVFRAVGMSYGRLLRVPFLITGVLMTLNVALVFFIQ 126
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L + + + + +++ + + ++ + + +
Sbjct: 127 PVSRFTYERLEYELRSGALGASIKVGEFTTLAD---RMALRIEESEDDGRQLKGIFARVA 183
Query: 185 DKKNKIIHRKDADLAII-----YNDKVKLK----KVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ K +++ A D + L+ +V+ + P T ++PI +
Sbjct: 184 NDKGQVLS-ISAKEGNFLATTDDPDTIILRLTEGTIVQDTGSQTPRVLTFTRHDLPIDLP 242
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR--AETQFYFLIVIPLMLVAMTLIAAS 293
++F + Y + + + N + R ++ F F +V +M+ M L+A +
Sbjct: 243 AIEEFRARGEDEREYILPELLRIGWADNQTESKRDASQASFNFRLVEVVMMALMPLLAVA 302
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + RS + V I + + + G+ P+ A +P L +L +
Sbjct: 303 LGIPPKRS-TSALGVFLSIIMVVAYHKVNQYGEDLAAIGMFDPILALWVPFFLFAALILW 361
Query: 354 ILLQ 357
+ +
Sbjct: 362 MYYR 365
>gi|237744434|ref|ZP_04574915.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|229431663|gb|EEO41875.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
Length = 359
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 55/348 (15%), Positives = 121/348 (34%), Gaps = 13/348 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y LK + + +F++D+ + + S+ L + +P I
Sbjct: 2 KIINKYILDE-LKGPIILAVFVFTFIFLLDIVVAMMEHIIVKGISVFDVLRLLSFYIPPI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q IP + ++ F +R SE V + G+SI +L P + +I IF + +
Sbjct: 61 LTQTIPIGMFLGIMICFTKFSRNSESVAMVSAGMSIRDILKPILAIAIGAAIFIIFLQES 120
Query: 123 IATSG--EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I + + +++ + K + N I K+ +
Sbjct: 121 IIPRSFIKLKYVGTKIAYENPVFQLKEKTF----VDNLDGYS-IYVDKVDSDGKAKNIIG 175
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKK---VVEYQYGRIPIDKNSTTLNIPIKMDGF 237
K+K + A + + +K+ V + G+ + I +K + F
Sbjct: 176 FEKSKDKSKFPLVLTGEEAFWKDSAIIVKESQFVSFDETGKKNLIGTFDENRIVLKPN-F 234
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q+ S + I + + K + + + + + + V + +I +SL
Sbjct: 235 QELSIKIKDVEALSITELIRGLKKVEATEVIKYKIEIFRKLALVFSTVPLAVIGFCLSLG 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
R ++ + + F + + +G L P A P +
Sbjct: 295 HHRISKKYSFIL-AMIIVFAYIIFLNVGIVMATAGKLNPFIATWTPNV 341
>gi|126175309|ref|YP_001051458.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
gi|217972440|ref|YP_002357191.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
gi|125998514|gb|ABN62589.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
gi|217497575|gb|ACK45768.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
Length = 370
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 50/362 (13%), Positives = 135/362 (37%), Gaps = 24/362 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+++Y + LK + LL + + I + ++ S L +P ++
Sbjct: 2 IVFKYLIREVLKAQIAVLLVLLTIFISQHFVRILADASD-GDFPASLIMTLIGLNLPYLV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+V+ +G+S W + ++ +++ +FT + +
Sbjct: 61 ILVLPLSLFLGILLAHGRMYSENEMVVLHGVGVSEWYVTRVTLILAVINMLFTGYLSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E+ ++++ + + ++P + ++I +N + + F +
Sbjct: 121 APWAEEQQNQVLEKAQSEAGLAALVQGRF--QASPNGRAVLFVERIGKDNELDKVFVAQL 178
Query: 184 IDKKNK--IIHRKDADLAIIYND-----KVKLKKVVEYQYGRIPIDKNSTT---LNIPIK 233
D ++ + + A + D ++ L V YQ D + IK
Sbjct: 179 PDPDDETGVTNVVVAKGGRVQEDSSGAQQLNLNDGVRYQGSPKAKDYQMIEFGGYKMQIK 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + ++ E++ K+ + +F++ + IPL + MTLIA
Sbjct: 239 EQQVDERRRKLSALPVDELV-KIEGAEAVA---------EFHWRLAIPLAIPIMTLIAVP 288
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ R + + + + ++ + + GI+ I + + +
Sbjct: 289 LARVNVRQGKFAKM-FPAVLLYLGYFGLMVAGRKALQDGIIPLYLGMWWIHISALLMGLF 347
Query: 354 IL 355
+L
Sbjct: 348 LL 349
>gi|117925962|ref|YP_866579.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
gi|117609718|gb|ABK45173.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
Length = 392
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 49/353 (13%), Positives = 124/353 (35%), Gaps = 13/353 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY T+ L+ LV + + + + + + S+S + +P +
Sbjct: 4 LSRYLLTECALTSFTALVVLTTLVLLPQILMLVD-LWVNKSVSVSVLGKMVLLIMPKFLV 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P LV ++ L + SEL++ +A GIS+ ++ P V +++ ++ + +
Sbjct: 63 ASLPMALLVGILIGLGRLAQDSELIVIKASGISLLRIFYPLSVPIVVVTACSLYLNWFLV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ ++ I + I + + E
Sbjct: 123 PDSHTLFQNIRVALLSQNTFSIKTQTFNNTIPG----LTIYVNRQSHGGKLLEGLLIHDE 178
Query: 185 DKKNKIIHRKDADLAIIYND-----KVKLKKVVEYQ--YGRIPIDKNSTTLNIPIKMDGF 237
+ + A +++ + LK+ +Q G N +T ++ + +
Sbjct: 179 RDPDMPVTVI-AKSGMLHRGSTGETALLLKEGSRHQMAPGNAYRRLNFSTYDLELGIAFE 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ S + Y I + AE +++ IPL + + +A ++++
Sbjct: 238 TESSSGDRAIRSYSIADLEQARIAQDPLLASEAEREWHRRFAIPLATLLLGFLAIPLAMQ 297
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
++ + I + + ++T+ ++ K G++ P A P + +
Sbjct: 298 QNQRSGRGFGFIVAISVLILQFILLTLGEAMAKRGLISPAMGAWSPNLALLLF 350
>gi|330982633|gb|EGH80736.1| hypothetical protein PSYAP_29478 [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 204
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 63/185 (34%), Gaps = 16/185 (8%)
Query: 157 NPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY 216
+ Q D FI + P + T D + ++ A A D +LK V +
Sbjct: 1 HRQGDEFIHINTVQPNGLML-GVTRYRFDDQRHMLTSSFAKEAHFKTDYWELKDVATTHF 59
Query: 217 G-------RIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR 269
P+++ L+ P + E + + ++ SN R
Sbjct: 60 NDGSTEVVNTPVERWDVALS-PQLLSTVIMPPESLSISGLWSYAHYLADQGLSNG----R 114
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
F+ ++ P + VA+ L+A S RS V G+ GF I + G
Sbjct: 115 YWLAFWTKVLQPAVTVALVLMAISFIFGPLRSVTLGQRVFTGVVVGFTFRIIQDL---LG 171
Query: 330 KSGIL 334
S +L
Sbjct: 172 PSSLL 176
>gi|189347121|ref|YP_001943650.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
gi|189341268|gb|ACD90671.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
Length = 403
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 48/398 (12%), Positives = 124/398 (31%), Gaps = 47/398 (11%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY K ++ + + + ++ + L ++ +I+ A L + +
Sbjct: 2 KIIDRYILKSHIGPFILAFITIVFVLVLQFLAGFSDRFLGK-GINIADIAELVMLQSAWM 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P LV I+ + + +SE+ + RA G+S+++L P ++ + LL + N
Sbjct: 61 VVFAVPMAVLVAVIMAYGTMTNSSEMTVFRASGLSLYRLAVPVLIVAALLSLLVERFNNV 120
Query: 123 IATSGEKIGIDLIQQW----------KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE 172
+ L+ ++ +++ ++ G
Sbjct: 121 VIPEANYRSKSLMMDIARAKPTFGLTENAFSSFIDGYSIFVRKTDEASKEIRGVVLYDLR 180
Query: 173 NHIWEDFT-----SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT 227
N I N+ + + I D+ K ++G+ + +T
Sbjct: 181 NPKSRTMMSAERGVIRFSPDNRFLVMTLFNGEIHQIDQSDYHKYRAMRFGQHRLVFETTG 240
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR------------------ 269
+ + + S E+ + + + I R
Sbjct: 241 FGFSRTSND--RIRGNISELSAGEL-HVAASALQRGIVSAERRVASITDAGPLQREQERI 297
Query: 270 ---------AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
++Y I + L + + +R + + + ++
Sbjct: 298 EADKMQYNKYLIEYYKKYAISVACFVFALAGIPLGV-LARRGGFGVGAGISLALFVLYWS 356
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+I + + G+L PV + +T + +L +
Sbjct: 357 MIIGGEKIAERGLLDPVLSVWSANAVTGLFGLFLLHRM 394
>gi|294055919|ref|YP_003549577.1| permease YjgP/YjgQ family protein [Coraliomargarita akajimensis DSM
45221]
gi|293615252|gb|ADE55407.1| permease YjgP/YjgQ family protein [Coraliomargarita akajimensis DSM
45221]
Length = 382
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 44/384 (11%), Positives = 131/384 (34%), Gaps = 33/384 (8%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L R+ FK L + + ++ + + L +P
Sbjct: 1 MLNLLHRHVFKEIAVAILLAMGLFIFVLLTGNAIRDVAALVAAGKLDAMTFIKLMGLLIP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L ++ L+ E+ ++ G+S++Q+ +P + + + +++V
Sbjct: 61 YVAAYALPLGILTGTLMALGRLSSQREITAMKSAGLSLYQIASPVFFIAFIAMVLSLVVN 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
A + +++ + + ++ P I++G + + +DF
Sbjct: 121 LDFAPRAKSAFKEMLASTISENPVKFIEEKKFIT-GFPGYVIYMG----DHDGGLMKDFW 175
Query: 181 SITIDKKNKIIHRKDADLAII----YNDKVKLK-----------KVVEYQYGRI--PIDK 223
+D + ++ A+ + +++ L+ E G I
Sbjct: 176 VWELDDRKQVTRFVRAESGELDYDREANELVLRVYNATAELRDDDAPETLLGEDLQTIFF 235
Query: 224 NSTTLNIPIKMDGFQKFSE--QFASRSFYEIIKKMSFSNKSNIFH--------NYRAETQ 273
T +P++ Q+ + + + +F ++++ + ++ +A+ Q
Sbjct: 236 QETEFALPLERLFGQQKTRHVKIKNMNFAQLMEVREAALQAEAQSEEPGISKQRMQAQVQ 295
Query: 274 FYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI 333
+ ++ L ++++ R +A + Y ++ ++
Sbjct: 296 IQKNCAMAFSTFSLALFGVPLAIQVGRKE-SYANLAIALIIAMTYYFLMIVVSWMEDRIE 354
Query: 334 LLPVAAALIPVILTISLSILILLQ 357
L P +P IL + + ++ +
Sbjct: 355 LRPDLLIWLPNILFQGIGLYLIRR 378
>gi|212636935|ref|YP_002313460.1| permease YjgP/YjgQ [Shewanella piezotolerans WP3]
gi|212558419|gb|ACJ30873.1| Permease YjgP/YjgQ [Shewanella piezotolerans WP3]
Length = 371
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 48/348 (13%), Positives = 126/348 (36%), Gaps = 24/348 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + LK + LL + + + + + S L +P +I
Sbjct: 2 IVFRYLIREVLKAQIAVLLVLLAIFISQHFVRVLADASD-GEFPASLVMTLLGLNMPFLI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+VI +GIS W + ++ +++ IFT + +
Sbjct: 61 VLVLPLSLFLGILLAHGRMYSENEMVILHGVGISEWYITRVTLLLAVVNMIFTGFLSIYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E+ +++ + + ++P + ++I +N + + F +
Sbjct: 121 TPWAEERQNQVLEHAQSEAGIAALTQGRF--QTSPNGRAVLFVERIGRDNKLDKVFVAQL 178
Query: 184 IDKKNK--IIHRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIK 233
D ++ + + A + +++L+ V+YQ +D + IK
Sbjct: 179 PDPDDETGLANVVVARSGKVVEDATGGQRLQLEDGVQYQGSPRRVDYQVVEFGGYQMEIK 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + ++ +++ A +F++ + IPL + MTLIA
Sbjct: 239 DQEAGERRRKLSALPIDQLMD----------IDTPEATAEFHWRLAIPLAIPLMTLIAVP 288
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
++ + + I + ++ + + G++
Sbjct: 289 MA-RVNNRQGKFAKMFPAILLYLGYFGLMVAGRKSLEDGVIPEFLGMW 335
>gi|13236182|gb|AAK16078.1|AF288080_5 YacA [Photorhabdus luminescens]
Length = 146
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 4/142 (2%)
Query: 217 GRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYF 276
G I + T P K+ + + Y+ IK + + + + + +
Sbjct: 8 GSQSISADWKTRLTPQKLGVVALDPDALSISGLYQYIKYLKQTEQESGX----YQLNMWK 63
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
I P + M L+A S R+ + + GI GF+ Y + I +
Sbjct: 64 KIFAPFSVAVMMLMALSFIFGPLRTVLMGVRIITGISFGFLFYVLNEIFGPLSLVYSMPA 123
Query: 337 VAAALIPVILTISLSILILLQK 358
V AAL+P L +++SI +LL++
Sbjct: 124 VLAALLPSFLFLTVSIYLLLKR 145
>gi|304410148|ref|ZP_07391767.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
gi|307302141|ref|ZP_07581899.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
gi|304351557|gb|EFM15956.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
gi|306914179|gb|EFN44600.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
Length = 370
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 51/362 (14%), Positives = 135/362 (37%), Gaps = 24/362 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+++Y + LK + LL + + I + ++ S L +P ++
Sbjct: 2 IVFKYLIREVLKAQIAVLLVLLTIFISQHFVRILADASD-GDFPASLIMTLIGLNLPYLV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+VI +G+S W + ++ +++ +FT + +
Sbjct: 61 ILVLPLSLFLGILLAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E+ ++++ + + ++P + ++I +N + + F +
Sbjct: 121 APWAEEQQNQVLEKAQSEAGLAALVQGRF--QASPNGRAVLFVERIGKDNELDKVFVAQL 178
Query: 184 IDKKNK--IIHRKDADLAIIYND-----KVKLKKVVEYQYGRIPIDKNSTT---LNIPIK 233
D ++ + + A + D ++ L V YQ D + IK
Sbjct: 179 PDPDDETGVTNVVVAKGGRVQEDSSGAQQLNLNDGVRYQGSPKAKDYQMIEFGGYKMQIK 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + ++ E++ K+ + +F++ + IPL + MTLIA
Sbjct: 239 EQQVDERRRKLSALPVDELV-KIEGAEAVA---------EFHWRLAIPLAIPIMTLIAVP 288
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ R + + + + ++ + + GI+ I + + +
Sbjct: 289 LARVNVRQGKFAKM-FPAVLLYLGYFGLMVAGRKALQDGIIPLYLGMWWIHISALLMGLF 347
Query: 354 IL 355
+L
Sbjct: 348 LL 349
>gi|291287413|ref|YP_003504229.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
12809]
gi|290884573|gb|ADD68273.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
12809]
Length = 349
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 56/365 (15%), Positives = 121/365 (33%), Gaps = 30/365 (8%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L +Y K + +L+ ++D + N +P
Sbjct: 2 KLLHKYILKEIY-PIFFLGNVFFVLLLLLDKLIDLADLFFTKNVPAFLIIQTIVYYLPSF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ IP ++ ++ F L+ SE+ RA G P ++ + + +++
Sbjct: 61 LVITIPTSAMLAVMIGFGRLSSDSEVTAMRAAGAGKKFFTTPTIIFGLTAFLLGIMMSLW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ +G + I + + + + ++ + I A K +
Sbjct: 121 LMPAGSRNAIGNLSKI---AKLVSINDMKEKELYDELPGIVFYAVKKDSNAKYRKMV--- 174
Query: 183 TIDKKNKIIHRKDADLAIIYNDKV-----KLKKVVEYQYG----RIPIDKNSTTLNIPIK 233
IDK A+ A I LK I+ ++ TLN P+
Sbjct: 175 IIDKAQH--SVITANEAEILPSGNAGLLMNLKNGRIVTLNEDGKHSKINFDTFTLNSPL- 231
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+D ++I+ N + +F I +P + M++ S
Sbjct: 232 IDAKDISVNSERIMQTKDLIE--------NFQEAPLYKFEFSKRISMPFAAIIMSIFGMS 283
Query: 294 VSLEFSRSN-QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ + F RS I + + + + + ++F +SG + P AA +P IL +++
Sbjct: 284 LGIFFHRSGRSLAIPITIAVVA--VYNILFFAAENFAESGRIEPFLAAWLPNILFALIAV 341
Query: 353 LILLQ 357
+
Sbjct: 342 FFYRR 346
>gi|160876367|ref|YP_001555683.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
gi|160861889|gb|ABX50423.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
gi|315268557|gb|ADT95410.1| permease YjgP/YjgQ family protein [Shewanella baltica OS678]
Length = 370
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 51/362 (14%), Positives = 134/362 (37%), Gaps = 24/362 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+++Y + LK + LL + + I + ++ S L +P ++
Sbjct: 2 IVFKYLIREVLKAQIAVLLVLLTIFISQHFVRILADASD-GDFPASLIMTLIGLNLPYLV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+VI +G+S W + ++ +++ +FT + +
Sbjct: 61 ILVLPLSLFLGILLAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E+ ++++ + + ++P + ++I +N + + F +
Sbjct: 121 APWAEEQQNQVLEKAQSEAGLAALVQGRF--QASPNGRAVLFVERIGKDNELDKVFVAQL 178
Query: 184 IDKKNK--IIHRKDADLAIIYND-----KVKLKKVVEYQYGRIPIDKNSTT---LNIPIK 233
D ++ + + A + D ++ L V YQ D + IK
Sbjct: 179 PDPDDETGVTNVVVAKGGRVQEDSSGAQQLNLNDGVRYQGSPKAKDYQMIEFGGYKMQIK 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + ++ E++K + +F++ + IPL + MTLIA
Sbjct: 239 EQQVDERRRKLSALPVDELVKVEGAEAVA----------EFHWRLAIPLAIPIMTLIAVP 288
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ R + + + + ++ + + GI+ I + + +
Sbjct: 289 LARVNVRQGKFAKM-FPAVLLYLGYFGLMVAGRKALQDGIIPLYLGMWWIHISALLMGLF 347
Query: 354 IL 355
+L
Sbjct: 348 LL 349
>gi|298529508|ref|ZP_07016911.1| permease YjgP/YjgQ family protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510944|gb|EFI34847.1| permease YjgP/YjgQ family protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 390
Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 49/369 (13%), Positives = 118/369 (31%), Gaps = 32/369 (8%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL R K L L + L+ + + ++++ + P
Sbjct: 2 KILHRQIIKEVGTIFLVTLASMLSLIVIGRMIDLKDIFVGQSIQILYVIKSFFYLG-PSF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +IP ++ + F ++ EL + GISI L+ ++ S+ FT+ V
Sbjct: 61 LSMVIPIACMLSIFLCFLRMSSDRELTALQTSGISIRSLVLSPLLFSLGAMGFTLYVTLH 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + G + + + + ++ D+ I P ++
Sbjct: 121 LTSWGIDNFRETAVEMVREQTEVSMQPGVFHRMIP---DMAIYVHNRDPGTSELKEV--- 174
Query: 183 TIDKKNKIIHR---KDADLAIIYND------KVKLKKVVEYQYGR-----IPIDKNSTTL 228
+ + A + +D L Y+ + + + L
Sbjct: 175 -FISDDTVPEAPLTIVAPTGRMLSDKEEGMLYFILDDGRIYRQDQEEHSLVSFGEYRLRL 233
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE---TQFYFLIVIPLMLV 285
++ + ++ S ++ + + + + +PL +
Sbjct: 234 DLFSLLGDAGLRDKRPEEMS----WGELQAYKDDAQADSRQYRLAVLEEHKRFSLPLACL 289
Query: 286 AMTLIAASVSLEFSRSN-QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ L A + L +++A F + Y++ T + G++G L P A +P
Sbjct: 290 ILGLFAVPLGLTLQGLGRNWGLLLAMSCFL--IYYSLFTAVYGLGEAGTLNPDLAMWMPN 347
Query: 345 ILTISLSIL 353
I + L++
Sbjct: 348 IFFLVLTLG 356
>gi|109899862|ref|YP_663117.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
gi|109702143|gb|ABG42063.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
Length = 368
Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 127/361 (35%), Gaps = 18/361 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+++RY K +K+ L M + + ++ + S A +P++
Sbjct: 2 LIFRYLVKETVKSQTAVFLVLMAIFITNKFVRVLSEASN-GDIPASLVLGFLALSMPVLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++ L SE+ + RA GIS W + +V ++++ + T + I
Sbjct: 61 SLILPLSLFLGIMLAHGRLYVDSEMTVMRACGISEWYVTRVMLVLAVIMALITGAMTLWI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L +Q D + +IP + I +I ++ +
Sbjct: 121 APLSVEREYQLEEQ--AGADTGLTTLIPGRFQQTANEKAVIFVHEIGNDSEPLKRVFMAQ 178
Query: 184 ID--KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D ++ +H A + +L E I T ++ F ++
Sbjct: 179 HDTTTDSQNVHLVYAKQGGLR----ELPDGSETLVLGDGIQYEGTLGEKDYRVVEFGEYQ 234
Query: 242 EQFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSL--- 296
Q A + + +K+S +F + A + + IPL L + +IA +S
Sbjct: 235 IQIAEQEAEQKRRKLSAYTTMQLFEDSSIDAIAELQWRFAIPLSLFFLVIIAVPLSAADP 294
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + + +L +++ G + P+ + + + ++
Sbjct: 295 RQGRFGKMFPALMLYLGYFLLLLAGRKVLED----GKIPPMLGLWWVHAVIGIIGMTLIF 350
Query: 357 Q 357
+
Sbjct: 351 K 351
>gi|71279918|ref|YP_267491.1| putative permease [Colwellia psychrerythraea 34H]
gi|71145658|gb|AAZ26131.1| putative permease [Colwellia psychrerythraea 34H]
Length = 388
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/366 (15%), Positives = 124/366 (33%), Gaps = 24/366 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K KT L M + + E + A ++P +
Sbjct: 2 IIFRYLLKEVAKTQLAVFFVLMTIFISQKFVRVLGDASE-GSIPGQLVMTFIALKIPDLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++ + + SE+ + A G+S W ++ +V +++ IFT + +
Sbjct: 61 GFILPLSLFLGVLLAYGRIYADSEMTVLHACGVSEWYVVRVTLVLAVITAIFTGIFTLYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + + ++ + + Q N +FI K E + +
Sbjct: 121 APLASEYQYKVKEELAADSGLSALVSGRFQQTGNQDAVVFIHDK--DRETNSFNKVFVAQ 178
Query: 184 IDKKNKIIHRK------DADLA-IIYND----KVKLKKVVEYQYGRIPIDKNSTTLN--- 229
+ K + + A + +D ++ L + Y + S N
Sbjct: 179 LPKGDNVDASIINSSLVYAKTGKVFEDDTGSQQLVLGDGIRYHRDIESKEFQSVAFNKYY 238
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
I IK + + ++ S E+ M +S + I PL + +
Sbjct: 239 IQIKDQEVEHQHRKLSAISTLELYNNMPPELESA------YRATIQWRIAFPLACIILIF 292
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
IA +S+ R + ++ + L + ++ + + + V I +
Sbjct: 293 IAVPLSVVNPRQGKFAKMLPALMLFLGYLLLLTSMRSAI-EKNAIPSVVGLWPIHISALF 351
Query: 350 LSILIL 355
+ +++L
Sbjct: 352 IGMMLL 357
>gi|332307892|ref|YP_004435743.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175221|gb|AEE24475.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 368
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/361 (15%), Positives = 129/361 (35%), Gaps = 18/361 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+++RY K +K+ L M + + ++ + S A +P++
Sbjct: 2 LIFRYLVKETVKSQTAVFLVLMAIFITNKFVRVLSEASN-GDIPASLVLGFLALSMPVLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++ L SE+ + RA GIS W + +V ++++ + T + +
Sbjct: 61 SLILPLSLFLGIMLAHGRLYVDSEMTVMRACGISEWYVTRVMLVLAVIMALITGAMTLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L +Q D + +IP + I +I ++ +
Sbjct: 121 APMSVEREYQLEEQ--AGADTGLTTLIPGRFQQTANEKAVIFVHEIGNDSEPLKRVFMAQ 178
Query: 184 ID--KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D ++ +H A + +L E I T ++ F ++
Sbjct: 179 HDTTTDSQNVHLVYAKQGGLR----ELPDGSETLVLGDGIQYEGTLGEKDYRVVEFGEYQ 234
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH--NYRAETQFYFLIVIPLMLVAMTLIAASVSL--- 296
Q A + + +K+S + +F+ + A + + IPL L + +IA +S
Sbjct: 235 IQIAEQEAEQKRRKLSAYTTAQLFNDPSIDAIAELQWRFAIPLSLFFLVIIAVPLSAADP 294
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + + +L +++ G + P+ + + + ++
Sbjct: 295 RQGRFGKMFPALMLYLGYFLLLLAGRKVLED----GKIPPMLGLWWVHAVIGVIGLALIF 350
Query: 357 Q 357
+
Sbjct: 351 K 351
>gi|167622903|ref|YP_001673197.1| permease YjgP/YjgQ family protein [Shewanella halifaxensis HAW-EB4]
gi|167352925|gb|ABZ75538.1| permease YjgP/YjgQ family protein [Shewanella halifaxensis HAW-EB4]
Length = 371
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/363 (13%), Positives = 129/363 (35%), Gaps = 26/363 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + K + LL + + + + + S L +P +
Sbjct: 2 IVFRYLIREVFKAQIAVLLVLLAIFISQHFVRVLADASD-GEFPASLVMTLLGLNMPFLT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+VI +GIS W + ++ +++ +FT + +
Sbjct: 61 VLVLPLSLFLGILLAHGRMYAENEMVIFHGVGISEWYITRVTLLLAVMNMVFTAFLSIYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E+ +++ + + ++P + ++I +N +
Sbjct: 121 APWAEERQNQVLEHAQSEAGLAALTQGRF--QTSPNGRAVLFVERIGRDNQ-LDKVFVAQ 177
Query: 184 I---DKKNKIIHRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPI 232
+ D + + + A + +++L+ V+YQ +D + I
Sbjct: 178 LPEPDDETGVANVVVARTGKVLEDETGGQRLQLEDGVQYQGSPKRVDYQVVEFGGYQMQI 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K + + ++ E++ A +F++ + IPL + MTLIA
Sbjct: 238 KEQEVGERRRKLSAMPIGELMD----------IDTPEASAEFHWRLAIPLAIPLMTLIAV 287
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
++ + + I + ++ + + G++ +++ I
Sbjct: 288 PMA-RVNNRQGKFAKMFPAILLYLGYFGLMVAGRKSLEDGVIPQYLGMWWIHASALAIGI 346
Query: 353 LIL 355
L+L
Sbjct: 347 LLL 349
>gi|239993538|ref|ZP_04714062.1| permease YjgP/YjgQ [Alteromonas macleodii ATCC 27126]
Length = 366
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 53/370 (14%), Positives = 126/370 (34%), Gaps = 37/370 (10%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+++RY K LK+ L M + + + + + P++
Sbjct: 2 LIFRYLLKETLKSQLAIFFILMAIFVTLRFVRVLGDASD-GDIPAGLVLGFLGLYAPILS 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ L SE+ + RA GIS W + + S+L+ I T +
Sbjct: 61 SLVLPISAYLGIMLAHGRLYVDSEMTVMRACGISEWYVTRVMLFLSVLIMIVTGAITLYF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF--TS 181
A + L ++ ++ + Q N + IF+ + N + +
Sbjct: 121 APLAAENEYQLREKARNEAGISALMPGRFQQTGNEKAVIFVHD---VDNNDKLQRVFLSQ 177
Query: 182 ITIDKKNKIIHRKDADLAIIYND-----KVKLKKVVEYQYGRI-----PIDKNSTTLNIP 231
D + A + N+ + LK+ V+Y+ + ++ + + I
Sbjct: 178 NQTDDSEGDVRVVYAQTGEVANNPDGTRNLVLKEGVQYEGKQSEKAFRKVEFDEYQIQIA 237
Query: 232 IKM-DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
K D ++ + +E + A + + I IPL + + LI
Sbjct: 238 DKPADETRRKVSVLPTNELWE-------------DDSIEARAELQWRIAIPLSIPFLVLI 284
Query: 291 AASVSL---EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
A +S R + + + +L +++ G + P +
Sbjct: 285 AVPLSAVDPRQGRFGKMFPAILLYLGYFLLLLASRRVLED----GKMPPQLGLWWVHTIM 340
Query: 348 ISLSILILLQ 357
+ + ++++++
Sbjct: 341 LIIGVMLIVR 350
>gi|46580072|ref|YP_010880.1| permease [Desulfovibrio vulgaris str. Hildenborough]
gi|120602470|ref|YP_966870.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris DP4]
gi|46449488|gb|AAS96139.1| permease, putative [Desulfovibrio vulgaris str. Hildenborough]
gi|120562699|gb|ABM28443.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris DP4]
gi|311233929|gb|ADP86783.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris RCH1]
Length = 380
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/357 (13%), Positives = 131/357 (36%), Gaps = 22/357 (6%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
L + LGA++ + +I ++ + ++ +L VP + ++P ++
Sbjct: 5 LVSIFLLCLGALLSLILIGRGLQLRELFLGLDLGLTDATLLFLYLVPFFMLLVVPVACML 64
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
+ F ++ ELV +A G+SI+Q++ +V +L ++ + + G
Sbjct: 65 SVFLTFLRMSTDRELVALKAGGVSIYQMMAAPLVFCVLCAGLSLSISLHWLSWGMGNFRA 124
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
I + + + + Q + + A+++ P + +
Sbjct: 125 TIMEIANTRARIVIQPGVFNQDIPG---LTLFARQVDPATGNLRQVIVEDRSRPGSTLT- 180
Query: 194 KDADLAIIYNDKVK------LKKVVEYQYGRIPI-----DKNSTTLNIPIKMDGFQKFSE 242
A D+V+ L+ Y+ + + S L++ G +
Sbjct: 181 IVAPEGTTATDEVRGEILFHLRDGRIYKADGENVSVLGFSEYSVRLDLDKLFKGLELGEI 240
Query: 243 QFASRSFYEI--IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV--SLEF 298
+ S+ ++ + + + + + + + +P + + + A + + E
Sbjct: 241 KPKEMSWRQLAGLDLNRYEAEMGERYVRKVLVEVHKRWALPAACIVLGIFALPLACAFEG 300
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R ++ VA + + Y+++++ S G++G + PV P +L + + L
Sbjct: 301 LRR---QLGVALALVMFLVYYSMLSLGLSTGEAGTVPPVVGLWAPNVLFLVAGLYGL 354
>gi|203284704|ref|YP_002222444.1| hypothetical protein BDU_816 [Borrelia duttonii Ly]
gi|203288236|ref|YP_002223251.1| hypothetical protein BRE_819 [Borrelia recurrentis A1]
gi|201084147|gb|ACH93738.1| uncharacterized conserved protein [Borrelia duttonii Ly]
gi|201085456|gb|ACH95030.1| hypothetical protein BRE_819 [Borrelia recurrentis A1]
Length = 402
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 58/349 (16%), Positives = 117/349 (33%), Gaps = 17/349 (4%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
F L T L+ +IL+ + DL E N SI+ + +P +
Sbjct: 54 FVNNILLTFLFMNFLFVILIVLFDLLTNLLNYLEH-NLSINDIIYIYYLYLPKCFSDGVA 112
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L + NL+ +E++ + GISI ++L ++ S+ + + N +
Sbjct: 113 LSFLFAVSNLLGNLSMRNEIIGLFSCGISIARILRSIIMLSVFVSVILFFFDNYLVVDTV 172
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
++ N +II K+ E HI + I D+ +
Sbjct: 173 AERDAFLKNNIGNQGANDRNIII-----KDFAREIYNIKRFDVETHIITNLMIILKDQDD 227
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-----IPIKMDGFQKFSEQ 243
R D A + K L V E+ + + + + + ++ +
Sbjct: 228 NFKKRYDISKAEWVDSKWMLYGVREFYKVELDVIEKFYEVLDGENIVNLEPGYIKIIMLS 287
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE--FSRS 301
+ +F +++ + K N+ + L+ + L++ +VS F +
Sbjct: 288 SKTLNFSKLVTWIGDLIKENLN----YSDALFDLLNRIFFSFRLILLSFTVSFVSLFLKK 343
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
N + I + I + G L A+ +P IL I +
Sbjct: 344 NIFIWSLLNSIAFAVVYVISIMVFNFLADLGYLSIFIASSLPTILFIII 392
>gi|119773933|ref|YP_926673.1| hypothetical protein Sama_0796 [Shewanella amazonensis SB2B]
gi|119766433|gb|ABL99003.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
Length = 369
Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/362 (14%), Positives = 132/362 (36%), Gaps = 24/362 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY FK K + LL + + + + + S L +P +
Sbjct: 2 IVFRYLFKEVFKAQIAVLLVLLTVFISQHFVRVLADASD-GEFPASLVVTLLGLNLPYLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+V+ +G+S W + ++ ++L +FT + +
Sbjct: 61 VLVLPLSLFLGILMAHGRMYAENEMVVFHGVGVSEWYVTRVTLLLAVLNMLFTGYLSLFV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E+ ++++ + + ++P + +KI +N + + F +
Sbjct: 121 TPWAEERQNQVLEKAQSEAGLAALVQGRF--QTSPDGRAVLFVEKIGKDNELEKVFVAQL 178
Query: 184 IDKKNK--IIHRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIK 233
D ++ I+ A + ++KL V YQ +D + IK
Sbjct: 179 PDPDDEHGQINLVSAAGGKVVEDASGAQQLKLNDGVRYQGSPKSLDYQVLEFGGYGMQIK 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + ++ +++ + + A + ++ I IPL + MTLIA
Sbjct: 239 EQEVDERRRKMSALPLNQLLDQ----------NTPEAVAELHWRIAIPLAIPLMTLIAVP 288
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ R + + I + ++ + + ++ + + + I+
Sbjct: 289 MARVNVRQGKFAKM-LPAILLYLGYFGLMVAGRKALEDEVVPAFMGMWWIHLSALVMGIM 347
Query: 354 IL 355
+L
Sbjct: 348 LL 349
>gi|114797170|ref|YP_760296.1| putative permease [Hyphomonas neptunium ATCC 15444]
gi|114737344|gb|ABI75469.1| putative permease [Hyphomonas neptunium ATCC 15444]
Length = 391
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/372 (16%), Positives = 139/372 (37%), Gaps = 26/372 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY + +L + AM L+ + L I + + + ++L A +P
Sbjct: 1 MFARLDRYLIRSFLGMFAGLTVLAMALLLLERLIRITEIVSGSGSA-FASASLLVANLIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P L+ I+ L+R+ E+V A G+S+++++ PFV S++L ++L+
Sbjct: 60 HYLNLALPGAFLISMILTIDRLSRSGEIVALMAAGVSLYRIVLPFVQFSLVLAAASLLIS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +++ + ++Q N I +LP + + T
Sbjct: 120 GFLQPLSRYSYREIVYNLQHQSVLSVFQEQKFVQYDNR----IIWTDSVLPGGRLGQ--T 173
Query: 181 SITIDKKNKIIHRKDADLAIIYN---DKVK---LKKVVEYQYGRIPIDK----NSTTLNI 230
I + + + + + L P ++ L+
Sbjct: 174 FILESEPDGARTLLTGGSGKLREIRAGEWEITLLGGAGASYRDADPPEEYDRIEYGELSW 233
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS--NIFHNYRAETQFYFLIVIPLMLVAMT 288
P+ + Q + R + + + ++ + + A F+ +L+AM
Sbjct: 234 PVIAETGQYRARGGDERELF-LPELLAKAGAAMPGDIAPAVAAATFHDRTSRAALLLAMP 292
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS--GILLPVAAALIPVIL 346
LIA + L R + V GI F+L + + ++ G++ P P+++
Sbjct: 293 LIAIILGLNLGRVARSS-GVVLGIL--FLLGVQKVLEYTLVQTSEGVIPPWMGFW-PIVV 348
Query: 347 TISLSILILLQK 358
++ + + L ++
Sbjct: 349 VVAAASIFLFRR 360
>gi|241761653|ref|ZP_04759740.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|260754018|ref|YP_003226911.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|283856464|ref|YP_163128.2| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241373961|gb|EER63494.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|258553381|gb|ACV76327.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|283775468|gb|AAV90017.2| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 403
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/361 (13%), Positives = 125/361 (34%), Gaps = 16/361 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ + RY + + L+ + +L+ + + ++ + + +S + A +P
Sbjct: 3 IFNAIDRYLIRLITVPLVTTLIVSAMLMVLDKMLKLFDFVANQGG-PVSVVWRMLANMLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IP + ++ F L SEL + RA+GIS +LL + + + + ++
Sbjct: 62 EYMSLGIPIGLTLGILLAFRKLALQSELDVFRAVGISYSRLLRIPYIFAFFFALVNLAIV 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I DL + + + + ++ + + +
Sbjct: 122 GYIEPYSHYAYEDLRYELRSGALGAAIKVGEFTKLGT---HMTLRVEGSQDSGRNLSGIF 178
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK------VKLKKVVEYQYGRIPIDKNSTTLN---IP 231
+ + +N AD ++L + T +P
Sbjct: 179 GTSENPENGQKLTVTADNGRFMPSDDPNVILLRLNHGLLIHNRPDFTTPRVLTFENHDMP 238
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ--FYFLIVIPLMLVAMTL 289
IK+ + F + ++ + + ++ ++ R + Q +F +V + + +
Sbjct: 239 IKLPAVESFRGRDGNQQEMTLTELFFILHQKHLPKKLRNQLQANLHFRLVEVATMFLLPM 298
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+A ++++ RS + V I + + ++ G G + PV +P IL
Sbjct: 299 LALTLAIPPKRS-TSSLGVFLSILILVTDHKLNQYCQTIGGLGKINPVLMMWLPFILFSL 357
Query: 350 L 350
L
Sbjct: 358 L 358
>gi|332187157|ref|ZP_08388897.1| hypothetical protein SUS17_2305 [Sphingomonas sp. S17]
gi|332012857|gb|EGI54922.1| hypothetical protein SUS17_2305 [Sphingomonas sp. S17]
Length = 399
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 55/367 (14%), Positives = 123/367 (33%), Gaps = 38/367 (10%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGEL---PNYSISRGAVLAATRVPL 61
+ RY + L+ A +L+ + + ++ E IS + A +P
Sbjct: 4 IDRYMARLIALPLFATLIIAAMLLVL----DRIRRLFEFVATEGGPISVVWRMLANLLPE 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP ++ ++ F L +SEL + R +G+S +LL + +I+L + ++
Sbjct: 60 YLGLGIPIGLMLGILLAFRRLATSSELDVMRGVGMSYTRLLRVPYMYAIVLAALNLAIVG 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN--------------PQQDIFIGAK 167
+ L + + + + + N IF+ A
Sbjct: 120 YVQPIARYYYEGLRYELRTGALGASIKVGEFTHLGNRMTLRIEESRDSGRDLSGIFVHAN 179
Query: 168 KILPE--NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS 225
+ E + D N II R + N + + + +
Sbjct: 180 TSKGDWIGVTAERGRFLATDDPNVIIFR-------LTNGTLIHNRPEFRAPRVLTFSSHD 232
Query: 226 TTLNIPIKMDGFQK--FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+++P + Q+ +F ++ + + + +F+F +V +
Sbjct: 233 LPIDLPKFDNFRQRGGRDLEFTLPELAKLGHEAPSAEARAG-----SRAEFHFRLVEVVT 287
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ + L+A S+ + RS + V I + + G G + P+ A +P
Sbjct: 288 MFLLPLLAVSLGIPPKRS-TSALGVFLSIVMLVTYHKVNQYAADIGALGRVDPLIALWVP 346
Query: 344 VILTISL 350
+ L
Sbjct: 347 FAIFAGL 353
>gi|323697852|ref|ZP_08109764.1| permease YjgP/YjgQ family protein [Desulfovibrio sp. ND132]
gi|323457784|gb|EGB13649.1| permease YjgP/YjgQ family protein [Desulfovibrio desulfuricans
ND132]
Length = 391
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 64/375 (17%), Positives = 132/375 (35%), Gaps = 32/375 (8%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L R F K + + L+ V + + N + L P
Sbjct: 2 KLLQRQIFLELCKLFGLTVSCLLGLILVGRML-QLRSLFLSQNIGVLNILQLFFYLTPFF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I P T++ + F ++ +ELV +A G+S++++L V+ L +F +
Sbjct: 61 LLLITPIATMLSVFLTFLRMSTDNELVALKASGVSLYRMLPAPVLFCSLCTLFAFFISFW 120
Query: 123 IATSGEKIGI-DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
G + L K + + + N I A ++ E +
Sbjct: 121 GLAWGMDMFKTKLYYFAKTHSKFALQPGVFNKEFPN----ITFYAHQVDNEKGELK---- 172
Query: 182 ITIDKKNKII---------------HRKDAD-LAIIYNDKVKLKKVVEYQYGRIPIDKNS 225
+ + I + ++A + +N ++ + E +
Sbjct: 173 FAFVRDDSIKGTSVVVVAPEAEVVSNPQEAKIHVVFHNGRIFRQSGDELNILKFRKYSIK 232
Query: 226 TTL-NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
L + + ++ ++ +I K S N + +T+FY + +PL
Sbjct: 233 LDLGKLLTGFNFAEQKAKDMPFFRLRDIRKDHSLMPHENERFFRKVDTEFYKRLTLPLGC 292
Query: 285 VAMTLIAASVS--LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ L A ++ R Q +++A G+F + YT+ +I S G+SG + P
Sbjct: 293 FILGLFAIPIASIFRGLR-QQYGLLLAMGLFM--VYYTMFSIGVSMGESGTIPPEYGMWA 349
Query: 343 PVILTISLSILILLQ 357
P IL I +++ L
Sbjct: 350 PDILFIFVALAGLRY 364
>gi|153824249|ref|ZP_01976916.1| permease YjgP/YjgQ family protein [Vibrio cholerae B33]
gi|126518229|gb|EAZ75454.1| permease YjgP/YjgQ family protein [Vibrio cholerae B33]
Length = 155
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 60/152 (39%), Gaps = 5/152 (3%)
Query: 207 KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH 266
+L +E +P + T+L P K+ E+ + + + + S +
Sbjct: 8 RLVNDIEISKESLPEYRWRTSL-APDKLAVVTVKPEELSLTGLSDYVHYLKASEQ----D 62
Query: 267 NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
+ R E + + P+ + M L+A S RS + G+ +GF Y
Sbjct: 63 SSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVTMGARILSGVIAGFSFYISSEFFG 122
Query: 327 SFGKSGILLPVAAALIPVILTISLSILILLQK 358
L P+ AL P ++ +++++ +L +K
Sbjct: 123 PLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 154
>gi|307718798|ref|YP_003874330.1| hypothetical protein STHERM_c11120 [Spirochaeta thermophila DSM
6192]
gi|306532523|gb|ADN02057.1| hypothetical protein STHERM_c11120 [Spirochaeta thermophila DSM
6192]
Length = 424
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/413 (13%), Positives = 122/413 (29%), Gaps = 62/413 (15%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L+RY + + + L ++ + + Q+ + +L +P I+
Sbjct: 8 TLYRYVGEEIALSFVISFLFFFVIFLINQFLLMAEQILSK-RAPLFDVILLIIYALPSIV 66
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+PF +L ++ L+ +E + +A GIS+ P VV S+LL + + +
Sbjct: 67 AISVPFASLAAALMSITRLSSDNEFLAFQAGGISLVHAFLPMVVFSLLLSSVSFVANDYF 126
Query: 124 ATSGEKIGIDLIQQWKDNGDK----------------------QKSDIIPWMQISNPQQD 161
G L +Q + Q + +
Sbjct: 127 LPLGTLNFAKLYRQILYTTPEIELESYAIKEYQNTILIPGKVNQSHIDDLLIIEETEEGT 186
Query: 162 IFIGAKKIL---------PENHIWEDFTS--------ITIDKKNKIIHRK---DADLAII 201
+ A++ D + + D ++A+
Sbjct: 187 RILQAREGDIVPGRNEKTALALELHDVFLSLVKREGDYEYSSAETLTYTILVKDINIALR 246
Query: 202 YNDKVKLKKVVEYQY----------GRIPIDKNSTTLNIPIKMDGFQKFSEQFASR---- 247
++ V Y+ R +K L + S S
Sbjct: 247 NPGPREMSSVDVYRVMKEREQVLEQKRRSHEKERDDLRRSVSRLYLTTLSLSNESIRSRF 306
Query: 248 --SFYEIIKKMSFSNKSNIFHNYR--AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S ++++ + I +F+ IP + L+A ++ L F+
Sbjct: 307 LGSLRSSLQRLRQKERITIEDRTLQIYTLEFHKKFSIPFSCIPFVLLAIAIGL-FNLKGG 365
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
GIF + + ++ + G P A +P IL +++ + L
Sbjct: 366 RAAGFGIGIFLSILYWGMLVAGQMLGLRTSFSPSLAMWLPNILITLVALTLFL 418
>gi|149200566|ref|ZP_01877574.1| putative permease, YjgP/YjgQ family protein [Lentisphaera araneosa
HTCC2155]
gi|149136338|gb|EDM24783.1| putative permease, YjgP/YjgQ family protein [Lentisphaera araneosa
HTCC2155]
Length = 329
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 51/322 (15%), Positives = 121/322 (37%), Gaps = 26/322 (8%)
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P I+ IP +LV +VF ++ +E+ RA GIS+WQ++NP ++ +++
Sbjct: 3 LPKILAYAIPIASLVSVTLVFSRMSAENEITAMRASGISLWQIVNPAILLALVSSACLFY 62
Query: 119 VINPIATSGEKIGIDLIQQWKDN---------------------GDKQKSDIIPWMQISN 157
+ E +++ + G+K++ + +++
Sbjct: 63 LNMFAVPHLEATRKSMMKGELLSNPSTFLRGGTTIDLGKLSVEIGEKKEDGTLKDLRVIE 122
Query: 158 PQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG 217
+ I + ++L ++ + T + + + D + + NDK + K + +
Sbjct: 123 VDKATDIVSNQLLAQSGKIINTTENSFTIEFIDVIILDNNWEFLKNDKGENKSLSGVKVT 182
Query: 218 RIPIDKNSTTLNIPIKMDG--FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET--Q 273
R+P + T +++ +K ++ + + + ++ +
Sbjct: 183 RLPNANTTYTFYTNDELNSGNLRKRAKYLNIKEMIARLAVLKNKEQTKTVRREHTDLLYN 242
Query: 274 FYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI 333
+ + +A L+A L SRS I + + Y I I +F K
Sbjct: 243 LNKNLALSFSPLAFLLMALPFGLRSSRSE-TSIGLLISLIVMMTYYATILITGAFDKHTA 301
Query: 334 LLPVAAALIPVILTISLSILIL 355
+ P +P I+ SL + ++
Sbjct: 302 MHPEILVWLPNIIFQSLGLGMI 323
>gi|328948914|ref|YP_004366251.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
2489]
gi|328449238|gb|AEB14954.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
2489]
Length = 447
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 123/360 (34%), Gaps = 24/360 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY K L L + ++ FV + + + + I+ L +P +
Sbjct: 81 NILVRYIAKELLLYFLICFVFFFVVFFVNQILLLAETILKK-RVPINSVLKLILYCLPNV 139
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I Q PF TLV ++ L +E++I RA G +L + +L+ +F+ ++ +
Sbjct: 140 ISQSAPFATLVGFLMCLGRLVTDNEILIFRASGQRYSLILKSVLAMGLLISVFSFIMNDY 199
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
G L +Q + + + ++++ + IG + D
Sbjct: 200 FLPIGTLKYNRLFKQIIVSNPAIELESKSIKRMNDST--LVIG----NVSKNNVSDIVLF 253
Query: 183 TIDKKNKIIHRKDADLAIIYND-------KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+K + A + + ++ + + + + + ++++
Sbjct: 254 DSEKDG-VQRIIMAGNSDVKKSSTPGVIMQLDMNSPIVLSLDKSKTENYESISAEKLRLN 312
Query: 236 GFQK---------FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
F+ + S + IKKM N S + +P
Sbjct: 313 IFEDSIISSSNGTSPREMTSWDLIKRIKKMKQENSSTKKRLNTFILECNKKFSVPFGSFF 372
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
L+A ++L F + + + + +GI + ++ I + FG G P +
Sbjct: 373 FALLAFPLALIFGKKDGQTLGLIFGIILSVLYWSATIIGQMFGIRGGYNGFWMMWTPNFV 432
>gi|226355960|ref|YP_002785700.1| permease YjgP/YjgQ [Deinococcus deserti VCD115]
gi|226317950|gb|ACO45946.1| putative permease YjgP/YjgQ; putative membrane protein [Deinococcus
deserti VCD115]
Length = 381
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 44/386 (11%), Positives = 109/386 (28%), Gaps = 42/386 (10%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L G ++ V+ L + + A +VP +
Sbjct: 4 LTRYVTAELIPPLLA---GTLLFTAVLSFGYFFISSQWLAGVPLGLVSRWIAYQVPDTLV 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++ P +++ +V F ++ ELV ++ GI + ++ P + + L+ + + IA
Sbjct: 61 KVFPMAIVLMTVVAFGRMSTERELVAVQSGGIGLGRVARPVALVAGLVTALALWLSLWIA 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L + + + + +
Sbjct: 121 PKANVETRGLYWDALTGAGLSQLVG----KTVDLGGGLTLALASYDSATRELRGVRVEKW 176
Query: 185 DKKN-KIIHRKDADLAIIYNDKVKLKKVVEYQYG------------------RIPIDKNS 225
+ + AD N+++ L Y R +
Sbjct: 177 NADAPRRATLIFADKGTFENNQLALSGYQVYTVDYEAASELNRVPENDPLAFREAVQNVF 236
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEI------------IKKMSFSNKSNIFHNYRA--E 271
++ IP K K + + + ++ + + R
Sbjct: 237 PSVVIPEKTTDTLKVDTGLSRKQTLAQYADAIGADSEGWPELITALTAPGVKASERQAAR 296
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS 331
+ +P + + L A +L F R+ + + + Y + + + +
Sbjct: 297 VNLNRKLALPFANLVLALSALPFALRFGRT--LGVSLGIALLIAVAYYLLFFVGLTVASA 354
Query: 332 GILLPVAAALIPVILTISLSILILLQ 357
+P + I+ + +L +
Sbjct: 355 MPAVPEVGVWLANIVFAVAGLWMLRR 380
>gi|326562956|gb|EGE13238.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis 46P47B1]
Length = 267
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 44/278 (15%), Positives = 92/278 (33%), Gaps = 31/278 (11%)
Query: 99 WQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP 158
W +L + +I LG+ N I+ DK + W +
Sbjct: 1 WAMLPAVIFVAISLGV------NQFVLPTANQYATAIRADTIY-DKLITIDGYWSVNHDG 53
Query: 159 QQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK------------V 206
+ E + + K ++I A +
Sbjct: 54 DSQDVVYISYADNEGG-LGEVKRYQL-KDGQLIAALKAKSGVYLPQSDDVMNAQKARYTW 111
Query: 207 KLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGF---QKFSEQFASRSFYEIIKKMSFSN 260
+L + E G + + + L +PI K E + S Y + M+
Sbjct: 112 QLSGIDEIGIGTSQVQQAHSEGKILTLPIAPTDVYLLTKEPEDLSLSSLYAHRQLMAHQG 171
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
++ R E F+ ++ P ++++ L+A+S RS + V + +G +
Sbjct: 172 TRSL----RHELAFWQKLLSPFAVLSLVLVASSFVFGSLRSQGLGLRVVLALLTGLLFSY 227
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + + L P+ AL+P++L+ + +L +K
Sbjct: 228 LTDLTGFVALATGLSPLLMALVPIVLSAMAGMYLLNRK 265
>gi|152978627|ref|YP_001344256.1| permease YjgP/YjgQ family protein [Actinobacillus succinogenes
130Z]
gi|150840350|gb|ABR74321.1| permease YjgP/YjgQ family protein [Actinobacillus succinogenes
130Z]
Length = 368
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 56/356 (15%), Positives = 125/356 (35%), Gaps = 17/356 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + LK+ L +++ F L + N L +P +
Sbjct: 2 ILTRYLTREVLKSQAAVLFILLLIFFSQQLVRVLGSAAN-GNVPADLVFSLLGLGMPAMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S I +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVRVVLLLSFFTAILAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++++ K N +M +N +FI +++ D
Sbjct: 121 SPWAIQKQTEIVEDAKANPRMAALSAGQFMVSNNNDFVLFIN----NIKDNQINDVYLFQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+K A+ + + L + + ++ F ++
Sbjct: 177 TRQKGNAKPSVVTAEKGELKS----LPNGDQILSLANSQRFEGSAALPDFRITRFDEYQA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNI--FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+S I + + + + + A+T+ ++ + + L + M LIA +S R
Sbjct: 233 YLGHQSAGAIENEAEVLDFNTLTQLNTPAAKTELHWRLTLILAVPLMALIAVPMSRVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP--VILTISLSILI 354
+ + + + + + +KS G +G L A +P I+ + L I++
Sbjct: 293 QGRFAKM-LPALLLYLIYFLAQSSLKSAGTAGKLD--AGIFMPLVNIVFLLLGIVL 345
>gi|315185937|gb|EFU19701.1| permease YjgP/YjgQ family protein [Spirochaeta thermophila DSM
6578]
Length = 424
Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 55/413 (13%), Positives = 118/413 (28%), Gaps = 62/413 (15%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L+RY + + + L ++ + + Q+ + +L +P I+
Sbjct: 8 TLYRYVGEEIALSFVISFLFFFVIFLINQFLLLAEQILSK-RAPLFDVILLIIYALPSIV 66
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+PF +L ++ L+ +E + +A GIS+ P VV +LL + + +
Sbjct: 67 AISVPFASLAAALMSITRLSSDNEFLAFQAGGISLLHAFLPMVVFGLLLSSVSFVANDYF 126
Query: 124 ATSGEKIGIDLIQQWKDNGDK----------------------QKSDIIPWMQISNPQQD 161
G L +Q + Q + +
Sbjct: 127 LPLGTLNFAKLYRQILYTTPEIELESYAIKEYQNTILIPGKVNQSHIDDLLIIEETEEGT 186
Query: 162 IFIGAKKIL---------PENHIWEDFTS--------ITIDKKNKIIHRK---DADLAII 201
+ A++ D + + D ++A+
Sbjct: 187 RILQAREGDIVPGRNEKTALALELHDVFLSLVKREGDYEYSSAETLTYTILVKDINIALR 246
Query: 202 YNDKVKLKKVVEYQY----------GRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYE 251
++ V Y+ R +K L + S S
Sbjct: 247 NPGPREMSSVDVYRVMKEREQVLEQKRRSHEKERDDLRRSVSSLYLTTLSLSNESIRSRF 306
Query: 252 IIKKMSFSNKSNIFHNYR--------AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ S + R +F+ IP + L+A ++ L F+
Sbjct: 307 LGNLRSSLQRLREKERIRIEDRTLQIYTLEFHKKFSIPFSCIPFVLLAIAIGL-FNLKGG 365
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
GIF + + ++ + G P A +P I+ +++ + L
Sbjct: 366 RAAGFGIGIFLSIVYWGMLVAGQMLGLRTSFSPSLAMWVPNIIISLVALTLFL 418
>gi|119513620|ref|ZP_01632629.1| permease YjgP/YjgQ [Nodularia spumigena CCY9414]
gi|119461725|gb|EAW42753.1| permease YjgP/YjgQ [Nodularia spumigena CCY9414]
Length = 385
Score = 99 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 53/377 (14%), Positives = 126/377 (33%), Gaps = 28/377 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + L+ + I+ I ++ Q + + L ++P I
Sbjct: 12 LLERYLISELIPPLLFSIAIVTIVAESIGISFEQFKFLIERQLTFEILIYLHLLKLPEFI 71
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P L+ I + L+ TSE++ + G+S+ +L+ P V+ + LL + I
Sbjct: 72 VFAAPIAVLLATIFTYKKLSNTSEIIAIHSCGVSLDKLVYPAVMVAALLIPVLFIFNEVI 131
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI-----------FIGAKKILPE 172
+++ + + Q + + + + A++
Sbjct: 132 VIPANYKAAITLEKAMNINRLYFQKNDIFYQQIDNENTLDSLAQQNYLKHLLYAERFADG 191
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAI---------IYNDKVKLKKVVEYQYGRIPIDK 223
+ T + D + K+ + A Y + RI D
Sbjct: 192 --QMQQVTLLMRDSE-KLKVIIKSRFAECYGQQKFCYFYEGVKNIINADGSYGERIKFDT 248
Query: 224 NSTTL-NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
L NI +++ Q+ + F + + F + + + +P+
Sbjct: 249 MPLYLPNIALQLQIDQETLDNREMNIFQVYQRLLVFQKAGDRRNFRSLQVNIQERFTLPV 308
Query: 283 MLVAMTLIAASVSLEFS-RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
L+ +++ + R+ + GI LY I ++ ++ +
Sbjct: 309 SCAVFALLGSAIGINLQPRTRYNSFSLTLGIIL---LYDAIQVIAKIFIISEIISFSWIW 365
Query: 342 IPVILTISLSILILLQK 358
+P I+ ++ + +L++K
Sbjct: 366 LPNIVGTTVGVYLLIKK 382
>gi|332991780|gb|AEF01835.1| permease YjgP/YjgQ [Alteromonas sp. SN2]
Length = 366
Score = 99 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 51/368 (13%), Positives = 124/368 (33%), Gaps = 33/368 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+++RY K LK+ L M + + + + + P++
Sbjct: 2 LIFRYLLKETLKSQLAIFFILMAIFVTLRFVRVLGDASD-GDIPAGLVLGFLGLYAPILA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ L SE+ + RA GIS W + + S+L+ I T +
Sbjct: 61 SLVLPISAYLGIMLAHGRLYVDSEMTVMRACGISEWYITRVMLFLSVLIMIVTGAITLYF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L ++ ++ + Q N + IF+ + + T
Sbjct: 121 APMAAENEYQLREKARNEAGLSAIIPGRFQQTGNAKAVIFVHDIDTDDQLRRVFLSQNKT 180
Query: 184 IDKKNKIIHRKDADLAII-----YNDKVKLKKVVEYQYGRI-----PIDKNSTTLNIPIK 233
+ +N+ + A + + LK+ V+Y+ + ++ + + I K
Sbjct: 181 ENGENQ-VQVVYAQTGQVASNPDGTRNLVLKQGVQYEGQQSQKSYRKVEFDEYQIQIADK 239
Query: 234 M-DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ ++ + + + A + + I IPL L + LIA
Sbjct: 240 PAEEARRKVSVLPTTELW-------------GDESIEARAELQWRIAIPLSLPFLILIAV 286
Query: 293 SVSL---EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+S R + + + +L +++ G + P + +
Sbjct: 287 PLSAVDPRQGRFGKMFPAILLYLGYFLLLLASRRVLED----GKIPPQLGLWWVHTIMLI 342
Query: 350 LSILILLQ 357
+ + ++++
Sbjct: 343 IGVALIVR 350
>gi|182413236|ref|YP_001818302.1| permease YjgP/YjgQ family protein [Opitutus terrae PB90-1]
gi|177840450|gb|ACB74702.1| permease YjgP/YjgQ family protein [Opitutus terrae PB90-1]
Length = 384
Score = 99 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 57/387 (14%), Positives = 127/387 (32%), Gaps = 36/387 (9%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY FK L T + +V V ++ S+ A L T +PL
Sbjct: 2 NLLDRYLFKSVLFTCAAAVALFTFIVLVPNVLRDMLAYVLTGQLSLLVFARLVFTLLPLA 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L ++ L+ SE+ RA+G+SI +++ P ++ + + + +
Sbjct: 62 LSYALPMGMLTGVLLTLGRLSADSEVTAMRAVGLSIPRIVRPILLLAAMGSALGIYLNFE 121
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+++ S P +++G K + I DF
Sbjct: 122 SMPRARVEYERGFAAAIQANPLNLIVPKTFIR-SFPGYVVYVGEK----QGGIMRDFWLW 176
Query: 183 TIDKKNKIIHRKDADLAIIYNDK------VKLKKVV-EYQYGRIPIDKNSTTL------- 228
+D + ++ A D+ + L + E + P L
Sbjct: 177 ELDAEGRVERFVRAASGRFDYDEPNNSLMLTLTQAKVESRAKENPERFEKPQLVASLGQW 236
Query: 229 -NIPIKMDGFQKFSEQFASRSFY-----------EIIKKMSFSNKSNIFHNYRAETQ--- 273
I + ++ F + + + + + ++ + R +
Sbjct: 237 GPIQLSLNRFFGRNAGIRMKQEWMTYGQLQAEGERLAAQPLPADAAEAKQARRTRMKLAI 296
Query: 274 -FYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG 332
F+ I L + ++ LI + ++ SR A + + Y + ++K +
Sbjct: 297 VFHDKINTALAVFSLALIGVPLGIKVSRRE-TSANFAVAVGITLVYYLMTVVIKVLDRHP 355
Query: 333 ILLPVAAALIPVILTISLSILILLQKE 359
P +P + I + ++ + E
Sbjct: 356 EYRPDLLLWLPNFILIGFGLWLMARIE 382
>gi|332142603|ref|YP_004428341.1| permease YjgP/YjgQ [Alteromonas macleodii str. 'Deep ecotype']
gi|327552625|gb|AEA99343.1| permease YjgP/YjgQ [Alteromonas macleodii str. 'Deep ecotype']
Length = 366
Score = 99 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 50/367 (13%), Positives = 125/367 (34%), Gaps = 31/367 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+++RY K LK+ L M + + + + + P++
Sbjct: 2 LIFRYLLKETLKSQLAIFFILMAIFVTLRFVRVLGDASD-GDIPAGLVLGFLGLYAPILS 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ L SE+ + RA GIS W + + S+L+ I T +
Sbjct: 61 SLVLPISAYLGIMLAHGRLYVDSEMTVMRACGISEWYVTRVMLFLSVLIMIVTGAITLYF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L ++ ++ + Q N + IF+ + + T
Sbjct: 121 APLAAENEYQLREKARNEAGISALMPGRFQQTGNEKAVIFVHDVDKNDKLQRVFLSQNQT 180
Query: 184 IDKKN--KIIHRKDADLAIIYNDKVKL-------KKVVEYQYGRIPIDKNSTTLNIPIKM 234
D + ++++ + ++A + L + ++ + ++ + + I K
Sbjct: 181 SDSEGDVRVVYAQTGEVASNPDGTRNLVLKQGVQYEGIQSEKAYRKVEFDEYQIQIADKP 240
Query: 235 -DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
D ++ + +E + A + + I IPL + + LIA
Sbjct: 241 ADETRRKVSVLPTSELWE-------------DDSIEARAELQWRIAIPLSIPFLILIAVP 287
Query: 294 VSL---EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+S R + + + +L +++ G + P + + +
Sbjct: 288 LSAVDPRQGRFGKMFPAILLYLGYFLLLLASRRVLED----GKMPPQLGLWWVHTIMLII 343
Query: 351 SILILLQ 357
I ++++
Sbjct: 344 GITLIVR 350
>gi|291279033|ref|YP_003495868.1| hypothetical protein DEFDS_0631 [Deferribacter desulfuricans SSM1]
gi|290753735|dbj|BAI80112.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 344
Score = 99 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 66/356 (18%), Positives = 132/356 (37%), Gaps = 27/356 (7%)
Query: 11 KYYLKTTLYFLLG---AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
KY LK + L I + +ID +++ N A L +P + I
Sbjct: 6 KYVLKELVPVFLVGNLFFIFILLIDKIVDLSELILAKNVPFFFVAELIIAYIPSFLVITI 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P TL+ ++V+ L+ SELV +++G + + P ++ + + +L+ + G
Sbjct: 66 PTSTLLSALIVYGRLSDDSELVAMKSLGADKYNIFKPSILLGFISLVLALLMSLYLMPKG 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
I+ + Q + +D + + K++ + I I+KK
Sbjct: 126 NDFAIERLMQI--SKYVSINDFKENELYTEIPGFVLYTDKRVDKNKFLG----LIIINKK 179
Query: 188 NKIIHRKDADLAIIYN---DKVKL---KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ I+ A I N + V+ G IP + + + + +KF
Sbjct: 180 DHIV--IQAKKGEIVNTTEGSLVFNLDNGVLIDTKGEIPSKLEFKSFVVNVPIITEKKFD 237
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ I ++ NKSNI + + +P + M + A V F R
Sbjct: 238 VRNE--RLMSIRNLINHLNKSNII-----KFELSKRFALPFASIIMAIFGAVVGSFFHR- 289
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
++ I + T++ + ++ +L P AA + I+ I L + +L +
Sbjct: 290 GGKAFGLSVSIIIVLIYNTLLLLSQNL--INMLNPYLAAWVANIIFIILLVYLLRR 343
>gi|153001631|ref|YP_001367312.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
gi|151366249|gb|ABS09249.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
Length = 370
Score = 99.5 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 48/348 (13%), Positives = 129/348 (37%), Gaps = 24/348 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+++Y + LK + LL + + I + ++ S L +P ++
Sbjct: 2 IVFKYLIREVLKAQIAVLLVLLTIFISQHFVRILADASD-GDFPASLIMTLIGLNLPYLV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+V+ +G+S W + ++ +++ +FT + +
Sbjct: 61 ILVLPLSLFLGILLAHGRMYSENEMVVLHGVGVSEWYVTRVTLILAVINMLFTGYLSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E+ ++++ + + ++P + ++I +N + + F +
Sbjct: 121 APWAEEQQNQVLEKAQSEAGLAALVQGRF--QASPNGRAVLFVERIGKDNELDKVFVAQL 178
Query: 184 IDKKNK--IIHRKDADLAIIYND-----KVKLKKVVEYQYGRIPIDKNSTT---LNIPIK 233
D ++ + + A + D ++ L V YQ D + IK
Sbjct: 179 PDPDDETGVTNVVVAKGGRVQEDSTGAQQLNLNDGVRYQGSPKAKDYQMIEFGGYKMQIK 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + ++ E++ K+ + +F++ + IPL + MTLIA
Sbjct: 239 EQQVDERRRKLSALPVDELV-KIEGAEAVA---------EFHWRLAIPLAIPIMTLIAVP 288
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
++ R + + + + ++ + + GI+
Sbjct: 289 LARVNVRQGKFAKM-FPAVLLYLGYFGLMVAGRKALQDGIIPLYLGMW 335
>gi|85709344|ref|ZP_01040409.1| predicted permease [Erythrobacter sp. NAP1]
gi|85688054|gb|EAQ28058.1| predicted permease [Erythrobacter sp. NAP1]
Length = 417
Score = 99.5 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 52/365 (14%), Positives = 135/365 (36%), Gaps = 17/365 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ + L A L+ + + + + + + I + +P
Sbjct: 8 IDRYIFRLVIVPMLGVFALAASLLLLDKMLRLFDFVA-VEGGPIGVVFKMLGALIPEYAS 66
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IP L+ ++ F L +SEL RA+G+S W+LL +++L + ++ I
Sbjct: 67 LAIPLGLLLGVLLAFRKLATSSELDTMRAVGLSYWRLLRVPYAITLVLVAVNIALVFYIQ 126
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + + +++ + + ++ + +
Sbjct: 127 PVSRYYYEQMEYELRSGALGASIKVGEFTTLAD---RMALRIERSEDDGQRLIGIFARVS 183
Query: 185 DKKNKIIHRKDADLAII-----YNDKVKLK----KVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ +++++ A D + L+ +V+ P + + ++PI +
Sbjct: 184 NSRDQVLS-ISAREGSFMATTDDPDTIILRLTEGTIVQDTGSETPRVLSFSRHDLPIDLP 242
Query: 236 GFQKFSEQFASRSFYEIIK--KMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
++F + + Y + + ++ +S ++ + F + V +M++ M L+A +
Sbjct: 243 AVEEFRARGEASREYILPELLRIGWSEQAEEDERDAVQAAFNYRTVEVVMMLLMPLLAVA 302
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+++ RS + V I + I + G + P+ A P +L I
Sbjct: 303 LAIPPKRS-TSALGVFVSIILVVAYHKINQYGEDIAALGRIDPIIALWGPFCAFAALIIW 361
Query: 354 ILLQK 358
+ +
Sbjct: 362 MYYRT 366
>gi|119953585|ref|YP_945795.1| hypothetical protein BT0808 [Borrelia turicatae 91E135]
gi|119862356|gb|AAX18124.1| hypothetical protein BT0808 [Borrelia turicatae 91E135]
Length = 355
Score = 99.5 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 54/346 (15%), Positives = 119/346 (34%), Gaps = 17/346 (4%)
Query: 16 TTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVN 75
T L+ +IL+ +IDL + N SIS + +P + L
Sbjct: 14 TFLFMNFLFVILIVLIDLFTNLFNYLDH-NLSISDIVYIYYLYLPKCFSDGLALSFLFAV 72
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
+ NL+ +E++ + GISI ++L ++ S+ + + N + +
Sbjct: 73 SNLIGNLSMRNEIIGLFSCGISISRILRSIIMLSVFISVMLFFFDNYLVIDTIAKRDAFL 132
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKD 195
+ G++ +D ++ + K EN + I D+ + R D
Sbjct: 133 KN--SVGNQGANDRNIIIRDFARE---IYNIKHYDIENDTIANLMIILKDQNDNFKKRYD 187
Query: 196 ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-----IPIKMDGFQKFSEQFASRSFY 250
A + + +L V E+ + + + I ++ + + + +F
Sbjct: 188 ISKAEWIDSRWRLYGVREFSKIERDVIEKFHEVLDGRGIINLEPEYIKIVMLSSKTLNFS 247
Query: 251 EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII--V 308
++I + + + L+ + L++ +VS + I +
Sbjct: 248 KLISWIKALRR----EKLDYSEALFDLLSRIFFSFRLILLSFTVSFVSLALKKNIFIWSL 303
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I + I + G L A+ +P IL I ++ +I
Sbjct: 304 LNSIAFAVVYVMSIMVFSFLADLGYLPIAVASSLPTILFIVINFII 349
>gi|213421645|ref|ZP_03354711.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 128
Score = 99.5 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 4/129 (3%)
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
P K+ + + + +K + S + R + + I PL + M L
Sbjct: 3 TPDKLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQFNMWSKIFQPLSVAVMML 58
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+A S RS + V GI GF+ Y + I + P+ AL+P
Sbjct: 59 MALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFL 118
Query: 350 LSILILLQK 358
+S+ ++L+K
Sbjct: 119 ISLWLMLRK 127
>gi|157374154|ref|YP_001472754.1| permease YjgP/YjgQ family protein [Shewanella sediminis HAW-EB3]
gi|157316528|gb|ABV35626.1| permease YjgP/YjgQ family protein [Shewanella sediminis HAW-EB3]
Length = 370
Score = 99.2 bits (246), Expect = 8e-19, Method: Composition-based stats.
Identities = 47/362 (12%), Positives = 129/362 (35%), Gaps = 24/362 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + K + L + + + + + S L +P +
Sbjct: 2 IVFRYLIREVFKAQIAVLFVLLAIFISQHFVRVLANASD-GEFPASLVMTLLGLNLPYLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + SE+V+ +G+S W + ++ +++ +FT + +
Sbjct: 61 VLVLPLSLFLGILLAHGRMYAESEMVVLHGVGVSEWYITRVTLLLAVINMLFTGYLSVFV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E+ +++ + + ++P + ++I +N + + F +
Sbjct: 121 TPWAEEKQNQVLESAQSEAGLAAITQGRF--QTSPNGRAVLFVERIDRDNQLDKVFVAQL 178
Query: 184 IDKKNK--IIHRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIK 233
D +++ + A + +++L V+YQ +D + IK
Sbjct: 179 PDPEDESGQSNIVMAKGGSVVEDGSGGQRLQLNDGVQYQGTPKKVDFQVVEFGGYQMQIK 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + ++ +++ + +F++ + IPL + MTLIA
Sbjct: 239 EQEVDERRRKLSALPIKDLMALDGPEATA----------EFHWRLAIPLAIPLMTLIAVP 288
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ R + + I + ++ + + G++ + L IL
Sbjct: 289 MARVNVRQGKFAKM-FPAILLYLGYFGLMIAGRKALEDGVVPAYLGMWWIHASALFLGIL 347
Query: 354 IL 355
+L
Sbjct: 348 LL 349
>gi|254669826|emb|CBA04196.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
Length = 182
Score = 99.2 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 71/174 (40%), Gaps = 6/174 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y I A ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGK-GSYGIWEMLGYTALKMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ +V L SEL + +A G+S +LL + I TV +
Sbjct: 61 AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
+A + + ++ NG + W++ N I +++LP++ +
Sbjct: 121 VAPTLSQKAENIKAAA-INGKISTGNTGLWLKEKN----SIINVREMLPDHTLL 169
>gi|34558361|ref|NP_908176.1| permease [Wolinella succinogenes DSM 1740]
gi|34484080|emb|CAE11076.1| conserved hypothetical protein-PREDICTED PEMEASE [Wolinella
succinogenes]
Length = 355
Score = 99.2 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 71/362 (19%), Positives = 137/362 (37%), Gaps = 31/362 (8%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+R+ YLK LL IDL + ++ S + + +
Sbjct: 5 FRFLGALYLKYFFILLLALETFFVGIDLLKFAEELPP----SANLVVLFVVYDALYALNF 60
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI-FTVLVINPIA 124
I+P ++ I++F L RT+EL +IG S Q+ P + ++L F VL P A
Sbjct: 61 ILPIALVLAQILLFVVLLRTNELTALLSIGYSKRQITTPLLGIALLFTFGFIVLNATPFA 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ E++ L Q + N ++ D +I KI P E +
Sbjct: 121 YAKERVDTILDQGYVGNFKRELFVKYH---------DSYIYFDKIYPLLQKAEGVKVYRL 171
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVV------EYQYGRIPIDKNS---TTLNIPIKMD 235
+ ++ +A A ++ +L + + E G P++ + +
Sbjct: 172 EGD-RVAQWIEAKEARFVDNHWRLNEAMVMTIPSELTLGGSPLEVEKVDFMEVLEGFRPR 230
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML-VAMTLIA--A 292
E+ + S + I+ MS + + ++ + Y L++ P + M L+A
Sbjct: 231 ILDSIYERHGAVSIIDAIESMSLLLEQQV-NSQKIRGILYSLVLFPFFAPLCMVLVAYYM 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+++ R IIV I + + + + SG + P + LIP+IL +L++
Sbjct: 290 PITM---RYGNLAIIVFAAILGVLLFWGLFFALSRLSMSGFIHPEVSLLIPMILWTALAL 346
Query: 353 LI 354
Sbjct: 347 FF 348
>gi|103487657|ref|YP_617218.1| permease YjgP/YjgQ [Sphingopyxis alaskensis RB2256]
gi|98977734|gb|ABF53885.1| permease YjgP/YjgQ [Sphingopyxis alaskensis RB2256]
Length = 402
Score = 99.2 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 52/368 (14%), Positives = 135/368 (36%), Gaps = 31/368 (8%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY + + L+ + +L+ + + + + + +S + A +P +
Sbjct: 7 IDRYIARLIFFPMVGTLVLSAMLLVLEKMLRLFDFVATEGG-PVSVVWRMLANLIPEYLS 65
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IP ++ ++ F L +SEL + + +G+S +L+ V ++ L + ++ I
Sbjct: 66 LGIPIGLMLGILLAFRRLATSSELDVLKGVGMSFGRLMRMPYVYAVGLAALNLAIVGFIQ 125
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L + + + + ++ + + + ++ E
Sbjct: 126 PYARYAYEGLQFELRSGALGASIKVGEFTRLG---ERMTLRIEESYNEGRSLRGIFVRGE 182
Query: 185 DKKNKIIHRKDAD---LAIIYNDKVKLK---KVVEYQYGRIPIDK----NSTTLNIPIKM 234
+ + + + LA + + L+ V+ ++ + + + ++ L IP+
Sbjct: 183 QRDGQRVSATASRGQFLATDDPETIILRLSQGVLIHESPKFAVPRVLTFDNHDLPIPLPR 242
Query: 235 DGFQKFSE----QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ + + K S ++ + F+F IV + + + LI
Sbjct: 243 IEAFRLRGGADREMTIPELFVAGKDRRQSEQT----RLESRANFHFRIVEVMSMFLIPLI 298
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYT----IITIMKSFGKSGILLPVAAALIPVIL 346
A ++++ RS G+F +L I + G G + P+ A +P +L
Sbjct: 299 AVALAVPPKRSTSS-----LGVFLSIVLLVTQHKINQYAEDLGARGAVDPLIALWVPFLL 353
Query: 347 TISLSILI 354
+L+I +
Sbjct: 354 FAALAIWM 361
>gi|225164329|ref|ZP_03726596.1| permease YjgP/YjgQ family protein [Opitutaceae bacterium TAV2]
gi|224801063|gb|EEG19392.1| permease YjgP/YjgQ family protein [Opitutaceae bacterium TAV2]
Length = 379
Score = 99.2 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 46/383 (12%), Positives = 118/383 (30%), Gaps = 42/383 (10%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL R+ F L T +L ++ V + + Q ++ A L VP +
Sbjct: 2 KILQRHIFLSVLTTCFAAVLLFTFVLIVGNALKDLLQFALAGQITMPDMAKLLLLLVPYV 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L ++V ++ SE+ RA G+ I + P ++ ++ + ++V
Sbjct: 62 VAFALPIGVLTGVLLVLGRMSGNSEITAMRAAGLGIAFVTRPILLLAVAGSVICLIVNYY 121
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
K +++ + + +++ + + + + D
Sbjct: 122 YMPMTRKPYKNMVPNIVRSDPLKLITARTFLREFP---NAVVYVD--EKDGTVLRDLWVW 176
Query: 183 TIDKKNKIIHRKDADLAII-------------YNDKVKLKK----------VVEYQYGRI 219
+D+ +++ A + +L+ V +G
Sbjct: 177 ELDRDKRVVRAHHAQEGELAYNEESHKLVLKVREGTTELRDRDDPEAFNKVVTVSTFGSA 236
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ----FY 275
+ + + L I ++ + ++++ + ++ Q
Sbjct: 237 EFEFSLSNLFGRIT---TRQKLDWMTLEELKAQREQLTAAPDADTPEGQMRRMQVDVTLN 293
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
L ++A LI + ++ SR + + + Y + + G
Sbjct: 294 KKAANALAVLAFALIGVPLGIKVSRRE-TSANLGMALLLILIYYMLSGVA---GWLEAYP 349
Query: 336 ---PVAAALIPVILTISLSILIL 355
P +P +L +L
Sbjct: 350 RWRPDLIVWVPPLLFAGFGAWLL 372
>gi|46446271|ref|YP_007636.1| hypothetical protein pc0637 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399912|emb|CAF23361.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 383
Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 2/157 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M ILWRY ++LK + + ++ + L+EI N IS + A ++P
Sbjct: 1 MIPILWRYSINHFLKIVFACVFAFISILLTMRLDEIANFAA--LGAPISYILLFAFYQIP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ +P L+ +++ L+ T EL RA G ++ LL P ++ + L IF ++
Sbjct: 59 YILPIALPLSCLIASLIFVQRLSNTHELTALRACGFALKDLLAPILLTAAFLTIFNFWIV 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN 157
+ +AT L + + + M++
Sbjct: 119 SEVATQTHLQTNILKSELRSINPLLLLNNKHLMRLKG 155
>gi|291060242|gb|ADD72977.1| putative permease, YjgP/YjgQ family [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 372
Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 56/355 (15%), Positives = 110/355 (30%), Gaps = 17/355 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL Y +L L+ A +++ ID+ Q Y S + +P
Sbjct: 2 KILQVYMLDMFLPIFFLVLVCASMILDAIDILVNLTQFISN-GYRFSSLVKIWYVSIPHY 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L L +E + G+S + ++ P+ L I N
Sbjct: 61 VLLCCPLSVLFAATYTVRILYVQNEFLAIHFGGLSFFSIVGPWFGFMCFLAIGIFAFDNS 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + ++I + + + S+ I A + D I
Sbjct: 121 VVVVSQSKKDEIIARTVSYAQGNSENDVVA---SSFDGKIISIAGAYHRGQKVLVDMLVI 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-----IPIDKNSTTLNIPIKMDGF 237
+ I +A A D+ L K V Y + +S L P+++
Sbjct: 178 MKNSNGTIQKLIEAHTAHWQKDRWVLIKPVVYTITHEMKLMVSEYLDSFELREPLELFDH 237
Query: 238 QKFSEQ-FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-ASVS 295
Q F + + + E + + +++K + +FY PL + M ++ + S
Sbjct: 238 QDFLTKGMSIQKIKETLHTLKYASKPH----RELSIRFYKKFYFPLTMCIMLCLSFLTGS 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
RS + + + Y + + P PV+ + L
Sbjct: 294 FLKKRS--LIMYIFCSVVLASAYYVVEMTSIVCAREEYFSPFWGVFFPVLTFLFL 346
>gi|325110017|ref|YP_004271085.1| permease YjgP/YjgQ family protein [Planctomyces brasiliensis DSM
5305]
gi|324970285|gb|ADY61063.1| permease YjgP/YjgQ family protein [Planctomyces brasiliensis DSM
5305]
Length = 392
Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 58/402 (14%), Positives = 132/402 (32%), Gaps = 62/402 (15%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + L G +L+ + + + ++ G L + + +
Sbjct: 2 KLLQRYITMELFRVFAMVLTGISVLLVFVGVFQQASENG-LGAMEVIQILPYVLYSL--- 57
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ IP L+ VV+ + EL +RA GI++ L+ P ++ +L + +L+ +
Sbjct: 58 LPITIPATMLLTVTVVYGRMAGDQELTAARAAGINLLSLIWPSLLMGAMLSVLALLLTDQ 117
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + + + + SN + I ++ T I
Sbjct: 118 VIPWSIQKIQETVLVKMEKIFLDQLRADHQFVESNQG----LAITVIDVQDKTLIKPT-I 172
Query: 183 TIDKKNKIIHRKDADLAII----------------------YNDKVKLKKVVEYQY---G 217
N I A+ A I + ++ +
Sbjct: 173 RYTPDNGQIFTIQAESARIRFNIQERTAWIKIVGGYINMDDGHGAWIREEEYPFPLPMVD 232
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFS--------------------EQFASRSFYEIIKKMS 257
+ P ++ I +++ EQ A SF E++++
Sbjct: 233 KQPKARHMAVKEISEELEEITATRRQQESHRVLARSSHLLTGHFEQLAMSSFVELVQQQH 292
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS-LEFSR-SNQPRIIVAYGIFSG 315
N+ R T+++ + L+ + S ++ R +V I
Sbjct: 293 VDNQR----VDRLSTEYHSRFALAGSCFFFVLVGSPFSIMQAKRQFLTSFFMVFMPIV-- 346
Query: 316 FMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
F+ Y ++ + + K+G++ P + I + T + I +L +
Sbjct: 347 FLYYPVVMLAMNQSKNGMVPPESVMWIANVATGVIGIYLLRR 388
>gi|45658408|ref|YP_002494.1| hypothetical protein LIC12569 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45601651|gb|AAS71131.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 631
Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 69/466 (14%), Positives = 135/466 (28%), Gaps = 112/466 (24%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY + L L ++ V+ L ++ R +
Sbjct: 129 IPILDRYILREIFSPFLVSLAFFTMVYMVLALQKMIGLFVGK-GVDPFRLLDYFGYLLAN 187
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQ----LLNPFVVGSILLGIFT- 116
+ IP L+ I+ L+ SE+ R+ G+S + L V ++L+G
Sbjct: 188 TLPMTIPMACLMSGIMAAGRLSGDSEITAIRSAGVSFPRIYINFLAFGFVMALLVGYLNF 247
Query: 117 ----------------VLVINPIATSG-------------EKIGIDLIQQWKDN--GDKQ 145
+L NP+ EK + + ++ G+ +
Sbjct: 248 YLSPENTRKMNEFNKWILAYNPLLAITPGQFSGDKTQDLFEKRARTMYTEGMNSNTGELK 307
Query: 146 KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRK----DADLAII 201
I W + IG K I I K ++ + + + +I
Sbjct: 308 GVQIREWEIFLEGNEYFHIGGKMIPMGGSRIIQ---IINAAKGNLVEKLGPDGEYEKSIR 364
Query: 202 YNDKVKLK--------KVVEYQYGR----IPIDKNSTTLNIPIKMDGFQ-----KFSEQF 244
D L+ + +++ G IP K TL + +K + F +
Sbjct: 365 LKDGWILEWSDDRKTFSITDFRNGEMDYNIPKGKEKKTLELNVKPETFSMPVLFQIRNNI 424
Query: 245 ASRSFYEIIK------------------------KMSFS-NKSNIFHNYRAETQFYFLI- 278
S +I K+ + +N TQ Y ++
Sbjct: 425 ESEGLEKIPGLETLQEMGVQIKGLIGLKQMVEQMKIELAMGAANGTLTPDQMTQQYSVLT 484
Query: 279 ------------------------VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
+P+ + I+ + L RS + + +
Sbjct: 485 QLMALMQQGKKVLTDFNVEIHRRIAMPISCLIFFFISFPLGLVVKRSGK-GMSFTLAVVF 543
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ +T T+ + + + IL LSI I++++ D
Sbjct: 544 LMIYFTFFTLGSTISYNDKIPDWIGPWSANILIALLSINIMIKRTD 589
>gi|188997596|ref|YP_001931847.1| permease YjgP/YjgQ family protein [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932663|gb|ACD67293.1| permease YjgP/YjgQ family protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 356
Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 61/359 (16%), Positives = 142/359 (39%), Gaps = 20/359 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y +K L I+ +I+L EI + + S + T++P
Sbjct: 3 ILDAYIYKKLFVYLLIIFPSFSIVSALIELIEILKKAKTIE---FSTLTLYILTKLPENA 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IIP +V + + + ++ E+ GIS+ + ++ SIL+ I V+ + +
Sbjct: 60 YYIIPISLIVASFMFINDSIKSREIYPVILNGISLNYISIRIIIFSILVVILQVINLETV 119
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDII---PWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+I L + K+ + +K I W++I Q F+ + + +
Sbjct: 120 MPKTNQIYQTLYLKLKNQQEDEKVKGIAYKMWLKIGENQ---FLYFDFFDLNSKVGKKLI 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP----IDKNSTTLNIPIKMDG 236
I+ DK+ I+R +A+ + DK+++ + + + L+I I ++
Sbjct: 177 FISFDKEFNPIYRLEAEDFKVSLDKIEVSNGRLIKINSLDNIIVEKFDKKILDINIDVEN 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+K S E+ K++ +++ + +Y ++FY + + +T L
Sbjct: 237 IKKIILAKKPVSISELY-KIASISQAYGYESYYFWSKFYEKLATVIAPFVLT----VFIL 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
F +N + + G + + +++ + + G + P + ++ + + +L
Sbjct: 292 GFIWTNNK-LYITSGFLATVFYWYGTSLISAVAEVGNI-PYFSIFFFDVVFLVIGFYML 348
>gi|297620918|ref|YP_003709055.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
86-1044]
gi|297376219|gb|ADI38049.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
86-1044]
Length = 371
Score = 97.6 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 67/379 (17%), Positives = 147/379 (38%), Gaps = 38/379 (10%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I+WRY Y K + + ++ L+EI + + + + + A ++P
Sbjct: 1 MFPIIWRYLLSQYFKVMGLCVAAFIAVLLTSRLDEIAHFA--VLSPTPALAAQFILLQIP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ +IP L+ +I++ L+++ EL R+ GIS+ L P + S+L+ +I
Sbjct: 59 YILPIVIPVSCLISSILLVQRLSKSHELTAFRSCGISLKDFLTPILFSSVLVAFINFYII 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK----KILPENHIW 176
+ ++T I ++ + ++ + ++ + +GAK L ++ +
Sbjct: 119 SELSTYSHYQTIIWKEELRS------TNPLHLLRNKH-----LMGAKGGFFNSLGDSKLG 167
Query: 177 EDFTSITIDKKNKIIHRKD---ADLAIIYNDKVKLKKVV--EYQYGRIPIDKNSTTLNIP 231
++ + + NK R A I ++ + V P + +
Sbjct: 168 KNAGEVILALPNKNQSRITLFLAKELISDDNFFEGTDVTMITAMPSGDPDSFDHLLVENA 227
Query: 232 IKMDGFQKFSEQFASRSFY----------EIIKKMSFSNKSNIFHNYRAETQFYF---LI 278
K Q + + +++ K+ + ++N F +
Sbjct: 228 AKTKTLTDDFSQLMKQKQWKIGNDYLTMEQLLAKL-YEEQANGFSVNDINCCYSEIIRRF 286
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+ + TL+ + + SR++ + I+ + +G T + I KS G++ L
Sbjct: 287 SLGFSAFSFTLMGLAFGISISRTHSLKKILWVVLLAG-GYITTLFIGKSAGQNLSLSLAL 345
Query: 339 AALIPVILTISLSILILLQ 357
IP +L ISLS +L +
Sbjct: 346 YT-IPHLLIISLSAAVLYR 363
>gi|320335816|ref|YP_004172527.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
21211]
gi|319757105|gb|ADV68862.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
21211]
Length = 371
Score = 97.2 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 51/338 (15%), Positives = 110/338 (32%), Gaps = 17/338 (5%)
Query: 9 FFKYYLKTTL-YFLLGAMILVFVIDLNEIQNQMGELPNY--SISRGAVLAATRVPLIIQQ 65
Y L+ L +++GA++ + + + I +G L +Y + + +L T+VP ++ Q
Sbjct: 28 LAPYVLREVLPLYVVGALVFLLLTTTDLISGVVGILLSYHPTPRQAWLLYVTQVPRLLNQ 87
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ +V F L + SEL + A G+ L P ++ + L+G F +
Sbjct: 88 SLILAIPFAVLVGFGRLAKDSELKATAAGGVRPLNLAWPLLLPAALIGAFVFYNGAYLTP 147
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ W + + +F ++ P+ + T + +
Sbjct: 148 QAQAQWN---TAWFSVYRQAPPPPVTTTYTYAQDGTLFSASRVETPQGATVANLTGVLVQ 204
Query: 186 KKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
A L + P + + T + D + +
Sbjct: 205 ---TPTETITASTGSWDARAKTWTLPGGWVVRGDARPAEFH--TPRTFPQRDEIARPTPP 259
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
A + E+ +++ S + N+ + + A+++ L
Sbjct: 260 PAESTLPELRAELA-SGRLNVQERRTYQFNIARRYADAFTALGFAFAASALGLMVR---N 315
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
V +F Y + + + SG L P AA
Sbjct: 316 RAWAVTNVVFLILGFYIVWSTVPQLAGSGALPPNLAAW 353
>gi|296532233|ref|ZP_06894980.1| permease YjgP/YjgQ [Roseomonas cervicalis ATCC 49957]
gi|296267440|gb|EFH13318.1| permease YjgP/YjgQ [Roseomonas cervicalis ATCC 49957]
Length = 381
Score = 96.8 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 49/319 (15%), Positives = 104/319 (32%), Gaps = 32/319 (10%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY F+ L +G LV++ + + S++ L +P
Sbjct: 4 LDRYLFRQLGIGLLAVTIGLAALVWLTQSLRFIELVLDR-GLSLAVFVELTGLLLPSFFA 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I+P T VV + + LN ELV+ RA G+S WQL P ++ + L F + + +
Sbjct: 63 VILPITTFVVTLFSYVRLNGDRELVVMRAAGLSDWQLSRPALLIATLATGFCLFLQLWLV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ ++ + S+ D+ + A++ + +
Sbjct: 123 PVSHAAFRSWQFEIRNEMAAILLQEGVF---SSLGDDLTVYARRREADGT-LRGILVHDM 178
Query: 185 DKKNKIIHRKDADLAI------------IYNDKVKLKKVVEYQYGRIPI---DKNSTTL- 228
+ + A + + +L+ R+ + +NS L
Sbjct: 179 REPGTPVT-IMAQEGRLVSTPAGPRVILLNGQREQLEPATATHPARLSVLSFAENSVDLA 237
Query: 229 ---NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
P+ + + E+F + + + + + P +
Sbjct: 238 SSSRSPVDVARNRDSRERFVPELLNPDP-----AENLPERDIRKFRAEGHQRLASPFTAL 292
Query: 286 AMTLIAASVSL--EFSRSN 302
+M ++ +V+L F R
Sbjct: 293 SMAMVGLAVALASGFRRHG 311
>gi|58038773|ref|YP_190737.1| hypothetical protein GOX0298 [Gluconobacter oxydans 621H]
gi|58001187|gb|AAW60081.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
Length = 390
Score = 96.8 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 50/370 (13%), Positives = 128/370 (34%), Gaps = 28/370 (7%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ +L RY + L L GA L+++ + + + S+ L + +P
Sbjct: 12 ILPLLDRYILRQLLIALLALTGGATALIWLTQSLHFVSMVVQH-GLSLRVFIQLTSLMLP 70
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I I+P T +V + + + EL + RA G S +L P ++ + + ++
Sbjct: 71 SFIAVILPITTFLVVLFTYQRMVGDRELTVMRAAGRSPLELARPGLLCAFFSVVLCYVLT 130
Query: 121 NPIATSGEKIGIDLIQQWKDNG----------DKQKSDIIPWMQISNPQQDIFIGAKKIL 170
+A Q ++ +D+ +++ + +L
Sbjct: 131 LWLAPVSYHAFHRYEFQIRNRMAAFLLQDGVFTSLSNDMTVYVRGRTSDGQLH----GVL 186
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI 230
E+ D + + ++ ++ D ++Y+ + + + +N+ L
Sbjct: 187 VEDDRDPDSHTTILAERGTMVVVNDQPRVVLYDGSREEIDRHTGRLNVLTFGRNTIDLTS 246
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ + + ++ + R + S + + + + PL ++ +I
Sbjct: 247 SRQHNHEDRDPDEMSLRELF-HPDPHEVSER----DRGKNIVVGWRRLTSPLTALSFAMI 301
Query: 291 AASVSLE--FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG--KSGILLPV-AAALIPVI 345
L FSR I + L I ++++ ++ + A++P +
Sbjct: 302 GLVTVLRGAFSRHGNI-TRPLIAILTVVGLLAISLMLQNLAGRHLALVPLIWLEAILPAV 360
Query: 346 LTISLSILIL 355
+ ++L L
Sbjct: 361 V--CAAMLFL 368
>gi|24213806|ref|NP_711287.1| hypothetical protein LA_1106 [Leptospira interrogans serovar Lai
str. 56601]
gi|24194638|gb|AAN48305.1| hypothetical protein LA_1106 [Leptospira interrogans serovar Lai
str. 56601]
Length = 631
Score = 96.5 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 69/466 (14%), Positives = 135/466 (28%), Gaps = 112/466 (24%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY + L L ++ V+ L ++ R +
Sbjct: 129 IPILDRYILREIFSPFLVSLAFFTMVYMVLALQKMIGLFVGK-GVDPFRLLDYFGYLLAN 187
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQ----LLNPFVVGSILLGIFT- 116
+ IP L+ I+ L+ SE+ R+ G+S + L V ++L+G
Sbjct: 188 TLPMTIPMACLMSGIMAAGRLSGDSEITAIRSAGVSFPRIYINFLAFGFVMALLVGYLNF 247
Query: 117 ----------------VLVINPIATSG-------------EKIGIDLIQQWKDN--GDKQ 145
+L NP+ EK + + ++ G+ +
Sbjct: 248 YLSPENTRKMNEFNKWILAYNPLLAITPGQFSGDKTQDLFEKRARTMYTEGMNSNTGELK 307
Query: 146 KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRK----DADLAII 201
I W + IG K I I K ++ + + + +I
Sbjct: 308 GVQIREWEIFLEGNEYFHIGGKMIPMGGSRIIQ---IINAAKGNLVEKLGPDGEYEKSIR 364
Query: 202 YNDKVKLK--------KVVEYQYGR----IPIDKNSTTLNIPIKMDGFQ-----KFSEQF 244
D L+ + +++ G IP K TL + +K + F +
Sbjct: 365 LKDGWILEWSDDRKTFSITDFRNGEMDYNIPKGKEKKTLELNVKPETFSMPVLFQIRNNI 424
Query: 245 ASRSFYEIIK------------------------KMSFS-NKSNIFHNYRAETQFYFLI- 278
S +I K+ + +N TQ Y ++
Sbjct: 425 ESEGLEKIPGLETLQEMGVQIKGLIGLKQMVEQMKIELAMGAANGTLTPDQMTQQYSVLT 484
Query: 279 ------------------------VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFS 314
+P+ + I+ + L RS + + +
Sbjct: 485 QLMALMQQGKKVLTDFNVEIHRRIAMPISCLIFFFISFPLGLVVKRSGK-GMSFTLAVVF 543
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ +T T+ + + + IL LSI I++++ D
Sbjct: 544 LMIYFTFFTLGSTISYNDKIPDWIGPWSANILIALLSINIMIKRTD 589
>gi|261819786|ref|YP_003257892.1| permease YjgP/YjgQ family protein [Pectobacterium wasabiae WPP163]
gi|261603799|gb|ACX86285.1| permease YjgP/YjgQ family protein [Pectobacterium wasabiae WPP163]
Length = 370
Score = 96.5 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 48/365 (13%), Positives = 125/365 (34%), Gaps = 36/365 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ L L +++ F L I + + L VP ++
Sbjct: 2 IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVISLLGLGVPEMV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ LL +V ++ GI + + +
Sbjct: 61 QLILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALVLAVFTGIIATINVMWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGD---------KQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
+ + +++ + K N + + + N + F
Sbjct: 121 SPWSSRHQEEVLAEAKANPGMAALVEGQFQSAQGGNAVLFVGNVKGSEFQHVFLAQLRPS 180
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK-----LKKVVEYQYGRIPIDKNSTTLN 229
+ + D+ I + + A + + N L+ + +
Sbjct: 181 GNARPSVVVADR-GHITNEEGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQAVT 239
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ +Q R+ + + A +F++ + + L ++ M L
Sbjct: 240 LN------NSDVQQMDMRTLWN-------------SDAHDARAEFHWRLTLILSVLIMAL 280
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+ +S+ R + + + + + + + + ++S G + P+ + ++
Sbjct: 281 MVVPLSVVNPRQGRV-LSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWVWLTNLMYFG 339
Query: 350 LSILI 354
++I++
Sbjct: 340 IAIML 344
>gi|209964866|ref|YP_002297781.1| predicted permease YjgP [Rhodospirillum centenum SW]
gi|209958332|gb|ACI98968.1| predicted permease YjgP [Rhodospirillum centenum SW]
Length = 372
Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 51/348 (14%), Positives = 124/348 (35%), Gaps = 25/348 (7%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY + T++ G +++ + + E S+ LA P +
Sbjct: 4 IDRYLLRNLAVATVFVTAGLSAAIWLTQSLRLVEMVVE-GGASLGIFFRLALLTFPTFLS 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I+P L + + L SELV+ RA G+S L P ++ + ++ + +
Sbjct: 63 LILPVGLLAAVLFTYNRLIMDSELVVMRAAGLSPMALARPALILAAVVALLCYTLTLFAG 122
Query: 125 TSGEKIGIDLIQQWKDNGDK----------QKSDIIPWMQISNPQQDIFIGAKKILPENH 174
+ ++ + L Q + + + + +++ + +L +
Sbjct: 123 PAAQRELVRLRQAVRSDVSAVLLREGTFNDVGTGLTVYVRERGREG----ALSGLLIHDL 178
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP--IDKNSTTLNIPI 232
+ + ++ +++ D +++N ++ +Q ++ T+++
Sbjct: 179 RSPGVATTVVAERGRLVEVDDVPHVVVFNG----TQIKFHQDDGRTEWLEFARYTVDLQA 234
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ RS +++ F R + + + PL+ +A T +
Sbjct: 235 LRKELGPRWIEPRERSLRDLVNLTDDPLDRQFFG--RLRAELHSRLATPLLPLAFTAVGL 292
Query: 293 SVSL--EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+ L EFSR Q R I + + + ++ I GK+ L P+
Sbjct: 293 AALLPGEFSRRGQGRRIALAAVGALVLQSAVLGISNLVGKNPALTPLL 340
>gi|327398771|ref|YP_004339640.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
gi|327181400|gb|AEA33581.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
Length = 348
Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 66/366 (18%), Positives = 134/366 (36%), Gaps = 29/366 (7%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K + + + +++ + DL ++ + + + S + V
Sbjct: 1 MLKKLDRYILKSLIVSFVISFFVIAVVMLIGDLVKLYDLLFGKGS-SFIVLLKILGYTVV 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I+P + V+ +L+ SE+ R+ GIS++++ P + S+ + +F I
Sbjct: 60 FLLAFIVPMALTIAINYVYSDLSNNSEITAIRSCGISLFRVYFPAFLFSVAVFVFLFYSI 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A I + N K + + P M ++I K + P+ +D
Sbjct: 120 AFVAPKARLSYRVEIAKTFRN--KVYAALKPNMFYDKVDGVMWI--KNLSPDKKHLKDVF 175
Query: 181 S-----ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS---TTLNIPI 232
I + KK D I+ + V Y + + S L
Sbjct: 176 FAQKGKIFLAKKGDFK---DIPSGILA----EFFNVKMYSPSKSGFEYGSFDRYELAFLT 228
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
F+ SF E++ S S + + ++ + + + A++LIA
Sbjct: 229 GRGYFKPNKNNTRFMSFGEVVNYYSKSKSKDALYRI------NKIVSMSMSVFALSLIAF 282
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S + FSRS + + +F FM Y I+ + +S + +P ++
Sbjct: 283 SFGITFSRSGKSA-GIVASLFLFFMFYIILMLSESLCDATGNPYFI--YLPNVVAFVFGS 339
Query: 353 LILLQK 358
I +K
Sbjct: 340 YIFYKK 345
>gi|328949933|ref|YP_004367268.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
14884]
gi|328450257|gb|AEB11158.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
14884]
Length = 346
Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 49/354 (13%), Positives = 116/354 (32%), Gaps = 17/354 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + L L ++L+ L E+ + A RVP +
Sbjct: 3 TLERYLLREVGAYLLGGLTVVVLLLLGGVLFEVFAPLLAR-GADPLAVGQYLAHRVPEAL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P L ++ + SEL + A GIS ++L V + LL + +
Sbjct: 62 VRGLPIAYLFALLLALSRMAEDSELKVLLASGISRERVLLALVWFAALLALMGFVAGESW 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++Q + + + + + ++ + +
Sbjct: 122 VPQQLQKARQVLRQAILAKPRALLQPGTFFTDAYGR---LVYVGRVKDDGIAEIRVLA-- 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVE--YQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
A ++ L+ + ++ R +P+ + +
Sbjct: 177 ------PGEVLTAASGAFVEGRLFLEDGMRVTFEGARPRTIARFARGTMPLN-ELAFEPP 229
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
A+ + E+ ++ +S + + + T ++ P ++ L A ++
Sbjct: 230 ASVANLTLAELRARIQEFKRSGLPY-HAEATAYWRKWAEPAATISFALFAVGLAFWML-G 287
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + + F Y ++ + G+ G L PV AA P +L + ++L
Sbjct: 288 GSRSLGMVGVVTLTFAYYATWSVFRIMGEQGALPPVIAAWGPNLLYALAAGVLL 341
>gi|291296717|ref|YP_003508115.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
gi|290471676|gb|ADD29095.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
Length = 338
Score = 96.1 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 55/354 (15%), Positives = 113/354 (31%), Gaps = 29/354 (8%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L +L + L+ DL + + + A RVP +
Sbjct: 2 LPRYLLRETLSLYLLGVLLFVGLI-TFDLLSSLSGAFLRARTPVGEIVQMVAYRVPHTLG 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + +V R SEL + A GI + P ++ ++ +G +L +
Sbjct: 61 IALPLGLVFALLVALARWIRQSELKAAYAAGIPPRVFIGPVLLLALAVGAVVLLNEGWLK 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP-----ENHIWEDF 179
++ L + + + + PQ A++I P E
Sbjct: 121 PIAQERFEALQYKIYYGSEPSG---VLTERTYTPQGLGIYYAQRIYPPPEGQTGSRLEGV 177
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ + + A+ + + +L+ + L P+ +
Sbjct: 178 RVV--ESGGSVWS---AERGVWVSGAWRLQNAYRVDPSGQIFQEAEHPLPFPVGVQPKAV 232
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
E ++ ++ + F R + V + +A + L
Sbjct: 233 SYEALRMPEL----HAVASADPAAQFPLAR-------RYANAVGTVVLAWLAIVIGLSLR 281
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S I V + F +T+ T+ F + +L A +P I+ L++L
Sbjct: 282 ESAWAFIAV---VGLIFGYWTLFTLSAQFARFDLLGA-YGAWLPNIVYGGLALL 331
>gi|108761666|ref|YP_631128.1| hypothetical protein MXAN_2917 [Myxococcus xanthus DK 1622]
gi|108465546|gb|ABF90731.1| putative membrane protein [Myxococcus xanthus DK 1622]
Length = 370
Score = 96.1 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 46/366 (12%), Positives = 129/366 (35%), Gaps = 20/366 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L ++ +L+FV+ + + + ++ A L A P +
Sbjct: 4 LSRYLLGELLVPLGVWVAFMFLLLFVMQFLRGTDVLLG-SSVTLVDMARLLAYLAPHFLM 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ L ELV +A+GI +LL + ++ L + +++ +
Sbjct: 63 MALPIAFLLAILLGLGRLGEDRELVALQALGIGPVRLLAAPMGIAVALSVLMLVITSTAQ 122
Query: 125 TSGEKIGIDLIQQ-WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH--------- 174
G L+ + + N + + ++ + A+++ +
Sbjct: 123 PWGLTGLKVLVSEVIRKNAVGDVKSGVFY----EDLSNLTLYAEQVSADGKWTNVLLHDD 178
Query: 175 IWEDFTSITIDKKNKIIHRKDAD--LAIIYNDKVKLKKVVEY-QYGRIPIDKNSTTLNIP 231
+ + + ++ ++ + + +V E +Y I D+ ++ +
Sbjct: 179 REANSPLLVLAQRGQVGTSTSGEVLRFALEAGEVHRSAGRETEEYSIIRFDQAEISVGVG 238
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
M +FS + E+++ + + + + L +A L+
Sbjct: 239 ASMGKRSRFSYSREELTPGELMEAAREAE-AQGEDARMYRMALHSRLGNALAPIAFALLG 297
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+++ R + + + Y + + + G+ G L A + ++ +++
Sbjct: 298 TPLAMG-RRQSGRAWGYLLTLGGYVLYYLLSRVFEQMGQKGQLPAGLAGQMANLVFVAVG 356
Query: 352 ILILLQ 357
++ L +
Sbjct: 357 LVALYR 362
>gi|297565136|ref|YP_003684108.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
gi|296849585|gb|ADH62600.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
Length = 346
Score = 96.1 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 61/352 (17%), Positives = 121/352 (34%), Gaps = 15/352 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY ++ L L ++ L E+ + + A A RVP +
Sbjct: 4 LDRYLWREVGAAVLGGLAVIVLAFIGGYLYEVLAPLLQR-GADPWVVAQYLAFRVPDALV 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ +P L ++V + SEL A GIS ++L P ++ + +L I VL+ IA
Sbjct: 63 RGLPIAMLFALLLVLSRMGEESELKAFLAGGISPLRVLFPLLLLAAVLFISGVLIGESIA 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ G L++Q + + + + + IT
Sbjct: 123 PKATQSGQSLLRQAVFQKPRALLAPGSTFTDAYGR---ILYVGQADEGG--IGGVRVITA 177
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ ++ A ++ L+ G P ++ Q
Sbjct: 178 E------EILLSERAHFEGGQLVLEGGSRVTYAGSRPRTVARFERGTVPLVELAQDAPGG 231
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
++ + E+ ++ +S + ++ T +Y P A T+ A +S F
Sbjct: 232 LSALTLAELHSRIRQYRQSGLPYHAEL-TAYYRKWAEPAAAFAFTVFAVGLSF-FLLGGS 289
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + + F Y ++ + G++G L P+ AA P L ++L
Sbjct: 290 RNLGMVGVVVLTFFYYATWSVGRIMGEAGALPPLLAAWGPGTLYAVAGAVLL 341
>gi|33151747|ref|NP_873100.1| hypothetical protein HD0553 [Haemophilus ducreyi 35000HP]
gi|33147968|gb|AAP95489.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 367
Score = 96.1 bits (238), Expect = 8e-18, Method: Composition-based stats.
Identities = 51/354 (14%), Positives = 122/354 (34%), Gaps = 13/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K LK+ L L +++ F L + N L +P +
Sbjct: 2 ILSRYLTKEILKSQLAILFILLLMFFSQQLISVLNSAVS-GKIPTDLVLSLLGLGMPALS 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ SE+ + RA GI L + S+ V + +
Sbjct: 61 QFMLPLSLFIALLLTLGRFYADSEITVMRACGIGQGLLTKVALFLSLFTTALAVYNVFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ + K N + +M++ + + I + + D
Sbjct: 121 TPWSINKQSQILAEAKSNPRFSALSVGQFMEVGG----YVLFIENINKQENKLNDVYVFQ 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
D++ K +R A + + + S + ++ F ++
Sbjct: 177 PDQQKK--NRPSVVTAELGGLQALPNGDQILTLANSTRYEGSANV-ADFRISHFDRYQAY 233
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAE--TQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ K++ +N +++ ++ E + + V+ + M L+A +S R
Sbjct: 234 LGYQDIQTNDKRVQRANFTSLINDTSNEAKAELQWRFVLIFAVPLMALLAVPMSQVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ ++ + + + + + ++S G++ L +P + L + I+
Sbjct: 294 GRFAKVI-PAVLLYLIYFLLQSSLRSSGENDKLNATL--FMPAVSIGFLMLAII 344
>gi|328952245|ref|YP_004369579.1| permease YjgP/YjgQ family protein [Desulfobacca acetoxidans DSM
11109]
gi|328452569|gb|AEB08398.1| permease YjgP/YjgQ family protein [Desulfobacca acetoxidans DSM
11109]
Length = 401
Score = 96.1 bits (238), Expect = 8e-18, Method: Composition-based stats.
Identities = 51/367 (13%), Positives = 141/367 (38%), Gaps = 26/367 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P I++R+ ++ LL ++VF+ + + + S+ +P
Sbjct: 14 PLIIYRHLWRECWDIFAVGLLAITVIVFMGRITRVMQMIITK-GVSLIDIGKFCVLLLPY 72
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P ++ ++ F L+ +E++ + G+S+ QLL P + ++++ +
Sbjct: 73 LLLFTVPMAAMIAVLITFLRLSNDNEIMALKTSGVSVLQLLPPILAFALVISSTALFFSL 132
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-QDIFIGAKKILPENHIWEDFT 180
G + L+ + K+++D+ Q+ N + + + ++ E
Sbjct: 133 YATPWGNQEMRRLLSE----VTKRRADLGIREQVFNNDFEHVVLFVNRVPTSGGPMEGV- 187
Query: 181 SITIDKKNKIIHRKDADLAII------YNDKVKLKKVVEYQYGRIPIDKNS---TTLNIP 231
++ D+ ++ AD A++ ++L + + +S T +P
Sbjct: 188 FLSDDRDPQVPITIAADKALLLFDLKSERLIMQLFQGRVLRLSEDATSFHSIEFETYQVP 247
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+++ F + E+ + ++ +K + + +P+ M LIA
Sbjct: 248 LELFKFVPKPKSEDEMFLGELRQALA-QHKPGTLDYNKLLVELNRRFSLPVGACIMILIA 306
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS----FGKSGILLPVAAALIPVILT 347
+ + + A G+ G +++ + ++ + G+ I+ P A +P +
Sbjct: 307 MPLGISTQIKGR-----AVGLIMGLVIFLLYYLLLTAAWRLGQHAIIPPGLAPWLPDFIF 361
Query: 348 ISLSILI 354
+ L+ +
Sbjct: 362 LFLAWGL 368
>gi|15595153|ref|NP_212942.1| hypothetical protein BB0808 [Borrelia burgdorferi B31]
gi|195941982|ref|ZP_03087364.1| hypothetical protein Bbur8_03794 [Borrelia burgdorferi 80a]
gi|216264628|ref|ZP_03436620.1| putative permease, YjgP/YjgQ family protein [Borrelia burgdorferi
156a]
gi|218249833|ref|YP_002375306.1| putative permease, YjgP/YjgQ family protein [Borrelia burgdorferi
ZS7]
gi|221217616|ref|ZP_03589085.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 72a]
gi|223889339|ref|ZP_03623926.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 64b]
gi|224533064|ref|ZP_03673669.1| permease, YjgP/YjgQ family [Borrelia burgdorferi WI91-23]
gi|224533456|ref|ZP_03674049.1| permease, YjgP/YjgQ family [Borrelia burgdorferi CA-11.2a]
gi|225549381|ref|ZP_03770353.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 94a]
gi|225550246|ref|ZP_03771205.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 118a]
gi|226321273|ref|ZP_03796801.1| permease, YjgP/YjgQ family [Borrelia burgdorferi Bol26]
gi|2688753|gb|AAC67159.1| predicted coding region BB0808 [Borrelia burgdorferi B31]
gi|215981101|gb|EEC21908.1| putative permease, YjgP/YjgQ family protein [Borrelia burgdorferi
156a]
gi|218165021|gb|ACK75082.1| putative permease, YjgP/YjgQ family protein [Borrelia burgdorferi
ZS7]
gi|221192562|gb|EEE18780.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 72a]
gi|223885260|gb|EEF56363.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 64b]
gi|224512000|gb|EEF82396.1| permease, YjgP/YjgQ family [Borrelia burgdorferi WI91-23]
gi|224513418|gb|EEF83776.1| permease, YjgP/YjgQ family [Borrelia burgdorferi CA-11.2a]
gi|225369114|gb|EEG98568.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 118a]
gi|225370009|gb|EEG99450.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 94a]
gi|226233305|gb|EEH32056.1| permease, YjgP/YjgQ family [Borrelia burgdorferi Bol26]
gi|312149740|gb|ADQ29811.1| putative permease, YjgP/YjgQ family [Borrelia burgdorferi N40]
Length = 355
Score = 95.7 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 59/356 (16%), Positives = 125/356 (35%), Gaps = 23/356 (6%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
F K + T L L MIL+ + D + N + + N + + +P +
Sbjct: 7 FIKSIILTFLSMNLLFMILIMLGDLFVNLLNYLEK--NIGLKDILYIYYLYLPKAFSDGV 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
L + NL+ +E++ + G+ + ++L P ++ SI + + N +
Sbjct: 65 ALSFLFAISNLIGNLSMRNEIIGLFSCGVPLTRILKPIILISIFISVVLFFFDNYLVIDT 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
LI+ GD + D ++ + K + + + + I D K
Sbjct: 125 IARRDVLIKN--SIGDSRSGDKTIIIRDFARE---IYNIKSYDIDENTFANLMIIIKDNK 179
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST-----TLNIPIKMDGFQKFSE 242
++ R D + A ++K +L + E+ I +N+ T I + D +
Sbjct: 180 DEFQTRYDINKAEWKDNKWRLYGIREFVKVGKKIKENAYDVLDGTGIIKLAPDYIRTVML 239
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF---- 298
+ +F ++I +SF F+ L+ + L+ S ++ F
Sbjct: 240 SSKALNFTKLINWISFLKA----ERLNYSDAFFDLLNRIFFSFRLILL--SFTVGFIALA 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ N + + I + I I G L A+ I + ++ +
Sbjct: 294 LKKNIFILSLLNSIAFAVVYVISIVIFNFLADLGYLHIYIASSFTTIFFLIINFFV 349
>gi|304321348|ref|YP_003854991.1| putative permease [Parvularcula bermudensis HTCC2503]
gi|303300250|gb|ADM09849.1| putative permease [Parvularcula bermudensis HTCC2503]
Length = 426
Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/376 (15%), Positives = 126/376 (33%), Gaps = 29/376 (7%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ +L RY FK L L +++ + + + M E S+ + +P
Sbjct: 45 LLTLLDRYIFKQVAVPFLLILACTTAVIWFTQMLQRVDLMVEDGG-SLLSFLRVTVLLIP 103
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I+PF + SEL RA G S +L P +V SIL + ++ +
Sbjct: 104 SLVGVILPFAVFAAVLYALNLFVTDSELPAMRAAGASRLRLARPVLVLSILAALVSLYIN 163
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF- 179
+ + ++ + + + ++Q P I + A+++ P F
Sbjct: 164 ADLQPKTYRQLRQTVEDVRSDIAQSLIREGVFVQ---PTAQITVFAQEVRPGGQFIGLFI 220
Query: 180 --------TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
T ++ + ++ V+ + + + + L
Sbjct: 221 NDSSDPRETKTYTAERGLFQMAETGPKLLLIEGTVQYRDRETGRVDVFRYIETAVDLAAF 280
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ G + E + S +++ S+ S R + + PL A+ ++A
Sbjct: 281 DRGSGGRSLDETERTVS--QLLN-PDLSDPSIARLADRYRAAGHARLATPLYCPALAVVA 337
Query: 292 ASVSLEF--SRSNQPRIIVAYGIFSGFML----YTIITIMKSFGKSGILLPVAAALIPVI 345
L SR V I +L + + + G L + P+
Sbjct: 338 LCFLLSPPISRRG-YGQQVLMAIGCALLLRTGGFLLQGLAADLGALNGLQYIV----PLA 392
Query: 346 LTISLSILI--LLQKE 359
+ + S+ + L++ E
Sbjct: 393 VILLGSVYLSGLVRLE 408
>gi|312148449|gb|ADQ31108.1| putative permease, YjgP/YjgQ family [Borrelia burgdorferi JD1]
Length = 355
Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/356 (16%), Positives = 125/356 (35%), Gaps = 23/356 (6%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
F K + T L L MIL+ + D + N + + N + + +P +
Sbjct: 7 FIKSIILTFLSMNLLFMILIMLGDLFVNLLNYLEK--NIGLKDILYIYYLYLPKAFSDGV 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
L + NL+ +E++ + G+ + ++L P ++ SI + + N +
Sbjct: 65 ALSFLFAISNLIGNLSMRNEIIGLFSCGVPLTRILKPIILISIFISVVLFFFDNYLVIDT 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
L++ GD + D ++ + K + + + + I D K
Sbjct: 125 IARRDVLVKN--SIGDSRSGDKTIIIRDFARE---IYNIKSYDIDENTFANLMIIIKDNK 179
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST-----TLNIPIKMDGFQKFSE 242
++ R D + A ++K +L + E+ I +N+ T I + D +
Sbjct: 180 DEFQTRYDINKAEWKDNKWRLYGIREFVKVGKKIKENAYDVLDGTGIIKLAPDYIRTVML 239
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF---- 298
+ +F ++I +SF F+ L+ + L+ S ++ F
Sbjct: 240 SSKALNFTKLINWISFLKA----ERLNYSDAFFDLLNRIFFSFRLILL--SFTVGFIALA 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ N + + I + I I G L A+ I + ++ +
Sbjct: 294 LKKNIFILSLLNSIAFAVVYVISIVIFNFLADLGYLHIYIASSFTTIFFLIINFFV 349
>gi|328949932|ref|YP_004367267.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
14884]
gi|328450256|gb|AEB11157.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
14884]
Length = 335
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/352 (12%), Positives = 100/352 (28%), Gaps = 27/352 (7%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L L + L+ DL + + + + R+P +
Sbjct: 2 LGRYLLREVLPPYLLGTLLFIALITT-DLLASLSGVFLRQGTPLVEVLQIVLYRMPFTLG 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + ++ R SEL A G+S +LL + S ++ + +
Sbjct: 61 IALPLGLVFAILIGLARWVRDSELKAMYASGVSPLRLLPVLLGLSAVVAGGVLFNAAWLK 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH---IWEDFTS 181
L+ + Q P+ A +I P+ E+
Sbjct: 121 PEAHARYEQLLYRVYYGTVPSGVLSN---QAYAPEGLGVYFAARIYPDGQGGGRLENVRV 177
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + A + + + L+ ++ L P +
Sbjct: 178 V--EPSGALWS---AARGVWQDARWVLEDAYRINPDGTVETRSRVPLPFPAQFVPPTTSY 232
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
E E+ + + ++A+ +A V L +
Sbjct: 233 EALPLGELRELARVDPEARFP-----------LQRRYADAFGVIALAWLAGVVGLGLREA 281
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ V + F + + T+ + ++ A +P + L+
Sbjct: 282 AWAFVAV---VLLIFGYFVLWTLAAQLARFALVGA-YGAWLPNAVYFLLAAW 329
>gi|260427478|ref|ZP_05781457.1| permease YjgP/YjgQ [Citreicella sp. SE45]
gi|260421970|gb|EEX15221.1| permease YjgP/YjgQ [Citreicella sp. SE45]
Length = 379
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 54/364 (14%), Positives = 131/364 (35%), Gaps = 24/364 (6%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP-----NYSISRGAVLAATRVPLIIQ 64
F Y+ + L + G LV V+ + +G ++ +P ++
Sbjct: 4 FDRYMLSQLMVVFGFFALVLVMVYW-LNRSVGLFDELIANGHTAGIFLEFTLLALPGVVA 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P + V ++ SEL + +A G+S W+L P +V ++G ++ + +
Sbjct: 63 IVLPMAAFGAAVYVTNRMSNESELTVLQATGLSPWRLARPVLVFGAIIGAMMAILSHVLV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + + ++ +P + + + I PE + + F S
Sbjct: 123 PASIGQLRERESEISGSVSARLLHEGTFL---HPTRGVTFYIRDITPEGELRDVFLSDRR 179
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLK---------KVVEYQYGRIPIDKNSTTLNIPIKMD 235
D I + + + +D KL + + + + ++ + +
Sbjct: 180 DPDRAIAYTAQSAYVLRDDDGPKLTMRSGLAQTLRAEDQTLSTTDFENLTYDISGLVTQN 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI--AAS 293
G + + S +E++ ++ + + PL+ V LI AA
Sbjct: 240 GPPRRRAR--QISTWELLTDTEAVSEEVKDSVGEVLEEAHMRFEQPLLCVVAALIGYAAL 297
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ FSR + IV F+ + + L P+ +P I+ + ++ +
Sbjct: 298 MTGGFSRFGVTKQIVGAIFLLVFIKIVESMVTTPVHANAALWPLI--YLPSIVGLIIAGV 355
Query: 354 ILLQ 357
+L +
Sbjct: 356 LLQR 359
>gi|254445062|ref|ZP_05058538.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
DG1235]
gi|198259370|gb|EDY83678.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
DG1235]
Length = 388
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/387 (12%), Positives = 126/387 (32%), Gaps = 35/387 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY K + + + L+ + L + + ++ L P +
Sbjct: 3 LIHRYILKNVFVSCMASVAMFAFLILTMSLVKDMLNLLAEGQLTVGAFFRLTKLLFPFVF 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSIL---LGIFTVLVI 120
+P + ++ L+ +E+ RA G+S+ +L + + +IL +
Sbjct: 63 VYALPMGFITGALLTMGRLSAENEITSLRAAGVSVIRLSSSVFLLAILGTTASLVVNFYY 122
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDII--------------------PWMQISNPQQ 160
P+A + + + Q G + + W+ N +
Sbjct: 123 GPLAKTEYRQELKNTIQTNPLGFIVEKTFVKDFTGSVIYVGKKEAEMLYDVWIWKLNSES 182
Query: 161 DIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP 220
+ A+ E+ + +D + I +DA+ + + + + P
Sbjct: 183 QVTTFARAEKGRFAFLENSAELQLDAEGVTIEYRDAE----DPENFRTRNFYPASAAKFP 238
Query: 221 IDKNSTTLNIPIKMDGF---QKFSEQFASRSFYEIIKKMSFS--NKSNIFHNYRAETQFY 275
+ + + F E YE I + + + + +A+ F+
Sbjct: 239 FSFSLEKILGKETLARKLTWMTFDELQGEIRKYEGIAATATGAVREEALDNLLKAKMVFH 298
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF-GKSGIL 334
+ +++ IA + L+ SR + G+ G + Y + ++ G+ +
Sbjct: 299 KNFAMGFAVLSFACIAIPLGLKTSRKE-TSANLGIGVGMGLLYYLAMISIEWLEGRPDLR 357
Query: 335 LPVAAALIPVILTISLSILILLQKEDG 361
+ IP + S + ++ + G
Sbjct: 358 PELL-FWIPNLAYQSFGAWLFIRADHG 383
>gi|256823038|ref|YP_003147001.1| permease YjgP/YjgQ family protein [Kangiella koreensis DSM 16069]
gi|256796577|gb|ACV27233.1| permease YjgP/YjgQ family protein [Kangiella koreensis DSM 16069]
Length = 370
Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/366 (13%), Positives = 120/366 (32%), Gaps = 28/366 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + L +T L + + + Q + S S + P++I
Sbjct: 2 ILSRYLNREVLTSTTAILGVLFAIFMSQRIVKYLAQAAA-GDISGSMVWQMVGLYSPILI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS---IWQLLNPFVVGSILLGIFTVLVI 120
++P + ++ F L SE+ + R++G+S + ++L P + ++G L +
Sbjct: 61 GFLLPLAFFLGCLLAFSRLYVDSEMAVLRSVGVSERFLIRMLAPAALFIAVVGGAVTLWL 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+P A D + + S + P Q + A + +F
Sbjct: 121 SPQANELTYQIRD-----EHASKLELSMLTPGHFQMFQQGQGVVYADSS-ERSTKLGNFF 174
Query: 181 SITIDKKNKIIHR-KDADLAI------IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
+ + R A A + + ++L Y+ T
Sbjct: 175 LAEMPSEMNPNTRIISAQSAERFYDESLDKNFLQLNDGHVYELDGNQQVSKVTRFERYFA 234
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
++ S + ++ + ++ +F++ + +P+ + +A
Sbjct: 235 RLDAERSIVSRRKISATSTPELLASGDGAS-------WAEFHWRLAVPISVPLFMFLAIP 287
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV--ILTISLS 351
+S R + + + +I + + +S + IP+ ++ +
Sbjct: 288 LSRVRPREGKFAKM-LPALMVYIGYIVLIVVFRRALESEQIPGWLG-FIPIYLVMAFLAA 345
Query: 352 ILILLQ 357
L+ L
Sbjct: 346 RLLYLH 351
>gi|284799560|ref|ZP_06390217.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
gi|284797388|gb|EFC52735.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
Length = 181
Score = 94.9 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 63/156 (40%), Gaps = 2/156 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y+ ++ ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGK-GSYNGAKLGQYVLMQMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ ++ L SEL + +A G+S +LL ++ I TV +
Sbjct: 61 AYELMPLAVLIGGLISLSQLASGSELTVIKASGMSTKKLLLILSQFGLIFAIATVALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP 158
+A + + ++ NG + W++
Sbjct: 121 VAPTLSQKAENIKAAA-INGKISTGNTGLWLKEKTA 155
>gi|188532528|ref|YP_001906325.1| Putative permease [Erwinia tasmaniensis Et1/99]
gi|188027570|emb|CAO95417.1| Putative permease [Erwinia tasmaniensis Et1/99]
Length = 366
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/361 (12%), Positives = 123/361 (34%), Gaps = 27/361 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLTLLGLGVPQMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ + + + + +
Sbjct: 61 QLILPLSLFLAILMTLGRLYAESEITVMHACGLGKSVLVKAAMILMLFTALLAAVNVGWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++Q K N + + + + + + +
Sbjct: 121 GPWSSRYQNEVLQNAKANPGAAALAAGQF--QQSGDGQSVLFIENVKGDTFSNVFLAQLR 178
Query: 184 ----------IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
+ + + R+D + + + + + RI KN +
Sbjct: 179 PKGNARPSVVVSEHGHMEQRRDGSQVVTLDQGTRFEGTALLRDFRITDFKNYQAIVGHQV 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ SEQ + + + ++ ++ + + ++ M L+
Sbjct: 239 VTLDPNDSEQMSLDTLWH-------------SDKPDFRSELHWRLTLVFSVLIMALMVVP 285
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S+ R + + + + + + + + ++S G G + P A ++ ++L++L
Sbjct: 286 LSVVNPRQGRV-LSMLPAMLLYLVFFLLQSSLRSSGDKGRVDPAIAMWTVNVVYLALAVL 344
Query: 354 I 354
+
Sbjct: 345 L 345
>gi|295690097|ref|YP_003593790.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
gi|295432000|gb|ADG11172.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
Length = 400
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 54/365 (14%), Positives = 120/365 (32%), Gaps = 21/365 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY + + L ++ + + + + + + + + A LAA VP +
Sbjct: 8 LIDRYLLRLLFWPLVGCLGVTVVALLLERILRLLDALSQ-SSARFGYVAQLAANLVPHYL 66
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P V +V L+ SE+ A G S+ ++ PF+ + L +F+++V +
Sbjct: 67 GLALPVAFFVALFIVIAKLSDGSEVDALLASGQSLERIAAPFLAVGLFLSVFSLIVFGYM 126
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ + G + ++ + + A
Sbjct: 127 QPYSRYAYRAVMHAAINAGWNGRLAGGAFI----DDKGSLLTADSADIAGQSLTRVFIRR 182
Query: 184 IDKKNKIIHRKDADLAIIY---NDKVKLKK-------VVEYQYGRIPIDKNSTTLNIPIK 233
+D K + A A + K V + + NS T P+
Sbjct: 183 LDAKGR-EEIITAGSANLKMDPGGKTVTMDLRDGRRIVRDDNGQYRNLAFNSLTTQTPLA 241
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKS--NIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
R + +++ KS + ++ Y + L + L+A
Sbjct: 242 AAAVLLRDRGGDEREL--TLGELATQAKSPHPVVSKSTLLSELYGRLARAAFLPFLPLLA 299
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+ L R N+ ++ G+ + + +S K+ + A IP L S +
Sbjct: 300 FPLGLASKRGNRAAGLIMAGVLL-LAFQHALLLGQSLAKADKVAAAPAIWIPFALFSSFA 358
Query: 352 ILILL 356
+ + L
Sbjct: 359 VWLFL 363
>gi|145637644|ref|ZP_01793299.1| predicted permease [Haemophilus influenzae PittHH]
gi|145269167|gb|EDK09115.1| predicted permease [Haemophilus influenzae PittHH]
Length = 161
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 1/143 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K L T L+ + L +I E +G+ Y I + + +P
Sbjct: 1 MINTLDRYIGKSILGTIFATLMTLVGLSAIIKFVEQFRSVGK-GTYDIWQAVIFTGLTIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ P L+ ++ NL SELVI ++ G S +++ + ++ L +FTV++
Sbjct: 60 KDIETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTVIIG 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGD 143
E+ D+ + G
Sbjct: 120 EWGIPQTEQFARDMRAKALSGGS 142
>gi|87306338|ref|ZP_01088485.1| hypothetical protein DSM3645_08402 [Blastopirellula marina DSM
3645]
gi|87290517|gb|EAQ82404.1| hypothetical protein DSM3645_08402 [Blastopirellula marina DSM
3645]
Length = 379
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/376 (14%), Positives = 119/376 (31%), Gaps = 30/376 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVID----LNEIQNQMGELPNYSISRGAVLAATRV 59
I+ RY ++K+ L F + L VID L+E + + R+
Sbjct: 3 IIDRYLLTQFIKSFLIFFISFTGLYVVIDSFNNLDEFLRYGEQTGRGAFPILFDYYTPRI 62
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
+TL+ + L R +E+ A GI+ +++ P ++ L+ I L
Sbjct: 63 FTFFNMTGGILTLIAAMFTVTWLQRHNEMTALMAAGITKERIVRPVIIAVGLIAILGALN 122
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD-IFIGAKKILPENHIWED 178
+ Q W KQ + + F +I
Sbjct: 123 REFVVPEYSDALSRNAQDWLGESAKQLQPKYDNLTDVLISGNHTFANELRIEAPKFRLPR 182
Query: 179 ---FTSITIDKKNKIIHRKDAD--LAIIYNDKVK---------LKKVVEYQYGRIPIDKN 224
I+ N +AD + ++ + L + +P D
Sbjct: 183 SQPGVGTKINAVNAFFKPAEADRPSGYLLDEVTEPENLAEIPSLTDRDGSVFVLMPQDNA 242
Query: 225 STTLN-----IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
N + + E +S S + +I + + + + +
Sbjct: 243 WLAPNQCFVVSELTFEQLTASREWRSSASTWALISALRNRSLDFGADV---RVEIHSRLT 299
Query: 280 IPLMLVAMTLIAASVSLEF-SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
P + + + L+ + L+ +R+ + + + + + + + G + ++ P
Sbjct: 300 QPFLDMTLLLLGLPLVLKNDNRNVFVAVGLCGAVVV--LFFGVTMASRGLGANYMVSPAF 357
Query: 339 AALIPVILTISLSILI 354
AA P++L + + +
Sbjct: 358 AAWFPLMLFVPFATYM 373
>gi|94495766|ref|ZP_01302346.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
gi|94425154|gb|EAT10175.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
Length = 402
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/366 (14%), Positives = 126/366 (34%), Gaps = 20/366 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M RY + L L+ A +L+ + + + + + +S + A +P
Sbjct: 1 MLTATDRYLARLIAVPMLGTLVIAAMLLVLDKMLSLFDFVAAEGG-PVSVVWRMLANMLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IP ++ ++ F L +SEL + RA+G+S +LL + +I L + ++
Sbjct: 60 EYLSLGIPIGLMLGILLAFRKLAMSSELDVMRAVGLSYGRLLRVPYMYAIALALINFGIV 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ L + + + + +N + + + ++ + +
Sbjct: 120 GFVQPLSRHAYEALRFELRSGALGASIKVGEF---TNLGKRMTLRIERSRDQGRNLQGIF 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP--IKMDGFQ 238
+ + + A + D V+ ++ + ++ P +
Sbjct: 177 VRATSRDGQSVAVTAAQGTFLATDD---PDVIIFRLRDGVLVNDAPKYKTPRILSFSSHD 233
Query: 239 KFSEQFASRSFY--------EIIKKMSFSNKSNIFHNYRAETQ--FYFLIVIPLMLVAMT 288
+ SF I + + R E + F+F +V + ++ +
Sbjct: 234 LPIDLPQIESFRGRDNDREKTIPELVVIGKNQATPPKLRNEVRANFHFRMVEVVFMLLLP 293
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L A + ++ RS + V I + + +S G G + P+ A P +L
Sbjct: 294 LAALAFAIPPKRS-TSALGVFLSIVFIVTYHKVNQYGESVGALGKIDPIIALWGPFLLAS 352
Query: 349 SLSILI 354
L + +
Sbjct: 353 GLVLWM 358
>gi|332708722|ref|ZP_08428694.1| putative permease [Lyngbya majuscula 3L]
gi|332352576|gb|EGJ32144.1| putative permease [Lyngbya majuscula 3L]
Length = 230
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/210 (15%), Positives = 80/210 (38%), Gaps = 10/210 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+ RY + L+ + G + V V L ++ ++ EL S + A + + P +
Sbjct: 1 MDRYIAAELIPPFLFGVGGFSSIGVAVGSLFDMVVKITEL-GLSWTIAAQVVLLKFPEFM 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P L+ ++ + L+ SEL+ R+ G+S+++L+ P +V S+++ T L I
Sbjct: 60 SYALPISVLLATLIAYSRLSNDSELIALRSCGVSLYRLVAPALVLSLVVTGITFLFNELI 119
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIP-------WMQISNPQQDIFIGAKKILP-ENHI 175
+ +++ + + + Q + +
Sbjct: 120 VPAANYQATITLEKALNQEKPAFDENGILYPEYQTFPQPNGTTTQTIKRLFYANGFDGQT 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDK 205
+D T + K+ ++ A+ + +
Sbjct: 180 MKDLTVLEWSNLGKLNKIILSESALWNSKQ 209
>gi|127511873|ref|YP_001093070.1| permease YjgP/YjgQ family protein [Shewanella loihica PV-4]
gi|126637168|gb|ABO22811.1| permease YjgP/YjgQ family protein [Shewanella loihica PV-4]
Length = 370
Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/365 (12%), Positives = 130/365 (35%), Gaps = 30/365 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + LK + LL + + + + + S L +P +
Sbjct: 2 IVFRYLIREVLKAQMAVLLVLLAIFISQHFVRVLADASD-GEFPASLVMTLLGLNLPYLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + +V + SE+V+ ++G+S W + ++ ++ +FT ++ +
Sbjct: 61 VLVVPLSLFLGILVAHGRMYAESEMVVFHSVGVSEWYVTRVTLLLAVANMLFTGFLVIYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E+ +++ + + ++P + ++I +N + + F +
Sbjct: 121 TPWAEETQNRVLENAQSEAGLAALTQGRF--QTSPNGRAVLFVERIGRDNQLDKVFVAQL 178
Query: 184 IDKKNKIIH----------RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNI 230
D ++ + + ++KL ++YQ + +D +
Sbjct: 179 PDPEDGASQSNIVVAQGGSVIEDESGE---QRLKLNDGIQYQSKQNQLDYQVVQFAGYEM 235
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
IK + + ++ +++ + +F++ + IPL + MTLI
Sbjct: 236 QIKEQEVDQRRRKLSALPIDQLLDTEGPEAVA----------EFHWRLAIPLAIPFMTLI 285
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A ++ R + + I + ++ + + ++ + L
Sbjct: 286 AVPMARVNVRQGKFAKM-FPAILLYLGYFGLMIAGRKALEDEVIPAYLGMWWIHASALFL 344
Query: 351 SILIL 355
+L+L
Sbjct: 345 GMLLL 349
>gi|254477380|ref|ZP_05090766.1| permease YjgP/YjgQ [Ruegeria sp. R11]
gi|214031623|gb|EEB72458.1| permease YjgP/YjgQ [Ruegeria sp. R11]
Length = 388
Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 51/361 (14%), Positives = 129/361 (35%), Gaps = 19/361 (5%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY YL +F L + + ++ + +++ S A +P +I+
Sbjct: 5 DRYVLSQYLLFFGFFALILVAVFWINRAVVLFDRLIG-DGQSALVFFEFTALSLPNLIRM 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P ++ V LN SEL + RA G S WQ+ P + I+ I ++ + +
Sbjct: 64 VLPVAAFASSVWVTNRLNSESELTVLRATGTSPWQMAKPALAFGIITAIMMSILTHFLLP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ + N + ++ +P + + +I P+ D
Sbjct: 124 TSIATLEQRETEISRNVTAKLLSEGDFL---HPTRGVTFYIGRIDPDGT-LNDVFLSDRR 179
Query: 186 KKNKIIHRKDADLAIIYNDK----VKLKKVVEYQYGRIPIDKNST-----TLNIPIKMDG 236
++++ A + D+ + + + + +ST + +I +
Sbjct: 180 NPDQVVT-YTGGKAYLVRDEDRTHLVMVDGMSQRIDMQTRRLSSTIFSDFSYDISSLANK 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
++ + + E+++ + + + + L+ VA+ LI S +
Sbjct: 239 AEEKTRNIRAIPSLELLQDRARLIAEGPYSAGALAEELHLRFARALVCVAVALIGFSALM 298
Query: 297 --EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
FSR R + + F+ + + ++ + P+ +P + ++ +++
Sbjct: 299 VGGFSRFGVWRQALVAFVLLIFVEGLRGVVSEPVLENADMWPLI--YLPTAVGLAAALIF 356
Query: 355 L 355
L
Sbjct: 357 L 357
>gi|226357374|ref|YP_002787114.1| membrane protein; permease [Deinococcus deserti VCD115]
gi|226319364|gb|ACO47360.1| putative membrane protein; putative permease [Deinococcus deserti
VCD115]
Length = 368
Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/362 (14%), Positives = 127/362 (35%), Gaps = 18/362 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY L + L ++L + L E+ + + VLA VP +
Sbjct: 6 RYVLAEILPLLVGALASVIVLFVLAALQEVIAPLLAKGARPLLVARVLA-LNVPEAAARA 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + ++ L+ SEL + A GI +L P ++ + + + L+ +
Sbjct: 65 LPIALMFATLLGLSRLSSDSELKAALASGIPARRLYRPVLLLGLGVTVLAFLIGEGLLPR 124
Query: 127 GEKIGIDLIQQW-----KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + Q+ + G + + + + + + D
Sbjct: 125 TKIEERKVKQEIVFDNPRVIGLGAQEPGGQSLVLRDALGRAI--SVGEVRAGGELRDLRI 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLK----KVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+T+ + A + + L+ + V YQ GR + +P++
Sbjct: 183 VTMQGGSVPREVITAREGRLKSGSNVLELQGGQRVTYQDGRPVTILSFERGTLPVQDVQA 242
Query: 238 QKFSE----QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + E++ + + + +I T + PL +A+ A S
Sbjct: 243 DLDTGGKALKANYLPLRELLARTNSYRQQHIQAPAEF-TALHQKFAEPLAALALAFFAVS 301
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+++ +S + + + + + F Y ++ + G++G + V AA P ++ + +
Sbjct: 302 LAVFTFQSGR-DLGLVWALLLAFAYYATWSVFRIMGENGAIPGVLAAYAPDLIAVVAGAV 360
Query: 354 IL 355
+L
Sbjct: 361 LL 362
>gi|16125408|ref|NP_419972.1| hypothetical protein CC_1156 [Caulobacter crescentus CB15]
gi|221234151|ref|YP_002516587.1| hypothetical protein CCNA_01214 [Caulobacter crescentus NA1000]
gi|13422474|gb|AAK23140.1| hypothetical protein CC_1156 [Caulobacter crescentus CB15]
gi|220963323|gb|ACL94679.1| hypothetical membrane spanning protein [Caulobacter crescentus
NA1000]
Length = 406
Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 54/346 (15%), Positives = 111/346 (32%), Gaps = 16/346 (4%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVV 78
LG ++ +++ + + A LAA VP + +P V +V
Sbjct: 27 AACLGVTVIALLLERILRLLDVLSQSSARFGYVAQLAANLVPHYLGLALPVAFFVALFIV 86
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
L+ SE+ A G S+ ++ PFV +LL +F+++V + ++
Sbjct: 87 IVKLSDGSEIDALLASGQSLERIAAPFVAVGVLLSVFSIIVFGYMQPYSRYAYRAVMHAA 146
Query: 139 KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADL 198
+ G + ++ + + A +D K + A
Sbjct: 147 VNAGWNGRLAGGAFI----DDKGSLLTADSADIAGQRLTRVFIRRLDAKGQ-EEIITAAS 201
Query: 199 AIIY---NDKVK---LKKVVEYQYGRI----PIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
A + + K L+ + + S T P+ R
Sbjct: 202 ADLKMDPDGKTITMDLRDGRRIAHDAYGTYRNLAFTSLTTQTPLSAAAVLLRDRGGDERE 261
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+ + + ++FY + L + L+A + L R N+ ++
Sbjct: 262 LTMGELRREAKSPDPVVSKGTLLSEFYGRLARAAFLPFLPLLAFPLGLASKRGNRAPGLI 321
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
G+ + + + K+G AA IP L +LS+ +
Sbjct: 322 MAGLLL-LAFQHSLLLGQGMAKAGKADAFAAIWIPFTLFAALSVWL 366
>gi|330811514|ref|YP_004355976.1| permease [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
gi|327379622|gb|AEA70972.1| Putative permease [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 373
Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/362 (13%), Positives = 122/362 (33%), Gaps = 21/362 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVIIMSGRFIKYLAQAAS-GALDPGSLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +L + + L+ + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLDSEMTVLSATGMSQQRLFRMTLFPATLVALVVAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A G LI Q + + ++P + +++ +
Sbjct: 121 APQGATQFQLLINQQ--DAMTEFDTLVPGRFQALRDGTRVTYTEQLSDDRIDLGGVFITQ 178
Query: 184 ID-----KKNKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
+ KK++ I A+ N + L+ Y D + +
Sbjct: 179 KNLSSDAKKDRGISVLVAEKGRQEINPDGNRYLILENGYRYDGKPGQADYRAIKYDTYGV 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + S++ R + + RA T+ + + +PL++ +TL+A
Sbjct: 239 LLPKPEVSDEVTDRDAMPTASLL-------GNDDIRARTELQWRLSLPLLVFIVTLMAVP 291
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S + + + I TI+ + + G + P + +++ +
Sbjct: 292 LS-RVNPRQGRFLKLLPAILLYMAYLTILISARGALEKGKIPPALGLWWVHSIFLAIGLG 350
Query: 354 IL 355
+L
Sbjct: 351 LL 352
>gi|224534155|ref|ZP_03674735.1| permease, YjgP/YjgQ family [Borrelia spielmanii A14S]
gi|224514580|gb|EEF84894.1| permease, YjgP/YjgQ family [Borrelia spielmanii A14S]
Length = 355
Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 61/356 (17%), Positives = 122/356 (34%), Gaps = 23/356 (6%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
F K + T L L MIL+ + D + N + + N S + +P +
Sbjct: 7 FVKSIILTFLSMNLLFMILIMLGDLFVNLLNYLEK--NISFKDILYIYYLYLPKAFSDGV 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
L + NL+ +E++ + G+S+ ++L P ++ S+ + + N +
Sbjct: 65 ALSFLFAISNLIGNLSMRNEIIGLFSCGVSLTRILRPIILISVFISVILFFFDNYLVIDT 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
LI+ N II K + + + + I D K
Sbjct: 125 VAKRDLLIKNSVGNSGSSDKTIII-----RDLAREIYNIKSYDIDENTFSNLMIIIKDSK 179
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST-----TLNIPIKMDGFQKFSE 242
++ R D + A ++K KL V E+ I +N+ T I ++ D +
Sbjct: 180 DEFQTRYDINKAKWKDNKWKLYGVREFVKVGRKIKENAYDVLDGTGIIKLEPDYIRTVML 239
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF---- 298
+ SF +++ +SF + L+ + L+ S ++ F
Sbjct: 240 SSKALSFTKLVNWISFLKS----ERLNYSDALFDLLNRVFFSFRLMLL--SFTVGFIALA 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ N + + I + I I G L A+ I + ++ +
Sbjct: 294 LKKNIFILSLLNSIAFAVVYVISIVIFSFLADLGYLNIYMASSFTTIFFLIINFFV 349
>gi|310822424|ref|YP_003954782.1| hypothetical protein STAUR_5183 [Stigmatella aurantiaca DW4/3-1]
gi|309395496|gb|ADO72955.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 371
Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/366 (15%), Positives = 135/366 (36%), Gaps = 21/366 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY K L ++ +L+FV+ + +++ L P +
Sbjct: 3 LLARYLLKELLAPLGVWVAFMFLLLFVMQFLLGTEVLLG-SAVTLTDIGRLILYLTPHFL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +P L+ ++ L+ EL +A+GIS QLL + +LL L+
Sbjct: 62 VKALPIAFLMAILLGLGRLSEDRELTALQALGISPVQLLLGPMAIGLLLAGLMALLAFTA 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT--- 180
G +L+ + + + + D+ + A+++ E W
Sbjct: 122 QPWGLTSVKELVNEVIKKNVAGDVKSGVFYEDLS---DLTLYAERVSREGGEWTHVLLHD 178
Query: 181 -------SITIDKKNKIIHRK--DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+ + ++ ++ R+ +A ++ +V Y + ++ ++ +
Sbjct: 179 DREPSSPLLVLAQRGRVSMREGDEALRLVLEEGEVHRATRSTADYSLLRFEQGEISVGLG 238
Query: 232 IKMDG-FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
M+ +F Q S E+I+ + KS + + + + ++ L+
Sbjct: 239 GSMNRKSNRFRSQKEEMSPGELIQAAEEAEKSGG-NPRPFLMAIHMRLGNAVAPLSFALL 297
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGF-MLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+++ ++ + + SG+ + Y + + ++ G L V AA +P IL
Sbjct: 298 GTPLAIGRKQAGRAWGYLLT--LSGYVLFYVLSRVFETLGNQEKLPMVLAAQLPNILFSV 355
Query: 350 LSILIL 355
L ++ +
Sbjct: 356 LGVVAM 361
>gi|330836570|ref|YP_004411211.1| permease YjgP/YjgQ family protein [Spirochaeta coccoides DSM 17374]
gi|329748473|gb|AEC01829.1| permease YjgP/YjgQ family protein [Spirochaeta coccoides DSM 17374]
Length = 427
Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 57/432 (13%), Positives = 133/432 (30%), Gaps = 93/432 (21%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L +Y K +L + + FV + + ++ + N S++ L +P +
Sbjct: 9 LLRKYIVKEFLASFAVAFTFFFFIFFVNQILLLIQRV-MVKNVSVADMLTLVVLSIPQFL 67
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
PF +L +V + +E++ R+ GI ++ +P +V I+L + T +V + +
Sbjct: 68 IYTFPFSSLSAASMVIGEFSAHNEIIAMRSSGIPYRRIFSPVLVIGIVLSLLTFIVADML 127
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ + + + I A ++ E++I D I
Sbjct: 128 LPFSSVRYQKEYREIMQKIPTLDVASYSSVTVGDK----IITAGRV--EDNIIHDI--IL 179
Query: 184 IDKKNKIIHR-KDADLAIIYND-------KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
D K R A I+ +++L+ V + S + ++
Sbjct: 180 FDAKETAEPRTISARQGTIFPGISQNLTYRLELENPVVLEVSSTDPSSWSLSSARTARLS 239
Query: 236 G---------FQKFSEQFASRSFYEIIK----KMSFSNKSNI------------------ 264
Q +SR I+ K++ + N+
Sbjct: 240 VDFIDQSGALATLTPAQMSSRDLISAIEVRKQKINEQKQENLRLQNSLADELASVKAKAE 299
Query: 265 --------------------------------FHNYRAETQFYFLIVIPLMLVAMTLIAA 292
F+ + + + + + L A
Sbjct: 300 DTDNGTEKERLKTNARQLEQKITSLKNYKIEDFYYTYYRAELHKKLALSAACFCLILTAL 359
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK------SFGKSGILLPVAAALIPVIL 346
+S R + I + + + I+ M+ SF ++ P +L
Sbjct: 360 PISFIKVRHGRL-IGFGLSLLIACVYWFILFFMQLKIFDVSFSPGWLM------WFPDVL 412
Query: 347 TISLSILILLQK 358
+++ + L ++
Sbjct: 413 VLAIGLAFLSRQ 424
>gi|85713126|ref|ZP_01044159.1| Predicted permease [Idiomarina baltica OS145]
gi|85693042|gb|EAQ31007.1| Predicted permease [Idiomarina baltica OS145]
Length = 371
Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 49/359 (13%), Positives = 125/359 (34%), Gaps = 22/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+++Y LK+ + L+ M + + + E + S L + +P ++
Sbjct: 3 IFKYLIAETLKSQIAVLVVLMTIFVSQKFVRVLSDASE-GDIPSSIIFQLLSLNLPALLA 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IIP + ++ + +E+ + A G+S W + +V +++L + T + +
Sbjct: 62 LIIPLSLFLGILLAHGRIYADNEMTVLHACGVSEWYVTRVTLVVAVILALLTAALTMYVV 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + D + +IP + I + + + F +
Sbjct: 122 PWSLEQEQKIEDKAR--ADSGLTALIPGRFQQSSNGKAVIFIQSQDDQGDLQNVFVAQHQ 179
Query: 185 DKKNKII--HRKDADLAIIY----NDKV-KLKKVVEYQY-GRIPIDKNSTTLNIPIKMDG 236
++ +I + + + +L+ + G + + IK
Sbjct: 180 AEQGRIRSGSVVVSTSGEVNTESSGSQWLELRDGKRFAGDGEHYQLMSFEQYRLQIKEQP 239
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + E+ ++ S + + + + I IPL + +TLIA +S
Sbjct: 240 VDEQLRDLEAYTVNELWQEQSNAAAA----------ELQWRIAIPLAMPLLTLIAVPLSR 289
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + A I + ++ KS + G++ + + I +L
Sbjct: 290 VNPRQGKFARM-APAILIYLGYFLVLMAAKSAVRDGVIPTFIGLWWIHVALLVFGIALL 347
>gi|90416560|ref|ZP_01224491.1| hypothetical protein GB2207_05142 [marine gamma proteobacterium
HTCC2207]
gi|90331759|gb|EAS46987.1| hypothetical protein GB2207_05142 [marine gamma proteobacterium
HTCC2207]
Length = 370
Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/360 (14%), Positives = 138/360 (38%), Gaps = 18/360 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATRVPL 61
I++RY + L T + ++++ + + G++ + SI R+P
Sbjct: 2 IIFRYLCREILSATTAVCVILLLVLMSGRFVKYLGKAVAGDMDSNSIFAMIGY---RIPS 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P + ++ F L +E+ + +A G+S +L+ ++ + + + T +
Sbjct: 59 FLELTLPLAFFLAVLLSFGRLYVQNEMSVLKACGVSERRLMGYTLIIASVFALATGWLSL 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ SG L K + K + +S + A+ + + + E F +
Sbjct: 119 SVSPSGMTKAEALFDAEKSRSELDKLMPKKFYSLSGGKG--VTYAEAVTEDRELDEIFLA 176
Query: 182 ITIDKKNKIIHRKD---ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+T R AD + ++ + + G ++ F+
Sbjct: 177 MTAGSDENSDRRLILVLADKGRQQQAENSSERYLVMESGY---RIEGVPGQNDYQITRFE 233
Query: 239 KFSEQF--ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
++ + ++ S + + ++ + + + IPLM++ +T++A +S
Sbjct: 234 EYGSRLEDSAPSIRKTKTDAMATGLLLGSNDPELQATLQWRLSIPLMVLVVTILAVPLSR 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV-ILTISLSILIL 355
+R + + I F + M+ +SG + L+PV + + +++L+L
Sbjct: 294 TNNRQGRYGK-LLPAIALYFTYLVALNAMRGALESGAIPISV-TLLPVHAVYLGIAVLLL 351
>gi|94984157|ref|YP_603521.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
gi|94554438|gb|ABF44352.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
Length = 367
Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/321 (14%), Positives = 110/321 (34%), Gaps = 12/321 (3%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
+ A L A VP + Q +P + ++ L SE+ + A G+ +L P
Sbjct: 43 GANPLLVARLVALNVPEALAQGLPIALMFAALLGLSRLAADSEIKAALASGVPTSRLFRP 102
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
++ + L+ + T + + T + + ++ + + Q + +D
Sbjct: 103 VLLLAALVTLGTFAINELLVTRAKVQVQSVQREIVLDNPRVIGLGTRDGQGNLVLRDALN 162
Query: 165 GAKKILPE--NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIP 220
A + D +T+ A + ++L+ +
Sbjct: 163 RAISVGEALPGGELRDLRIVTMQAGLPPREVITARRGRLKPGSNVLELEDGQRITFQDAR 222
Query: 221 IDKNSTTLNIPIKMDGFQKFSE------QFASRSFYEIIKKMSFSNKSNIFHNYRAETQF 274
T + + Q E + E++ +M + + T
Sbjct: 223 PVTVLTFARGSLPVQDVQASFEGGDATLKPIYLPLRELLARMQTYRQQKVQAPADF-TAL 281
Query: 275 YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
+ PL +A+ S+++ RS Q + + + + F Y ++ + G++G +
Sbjct: 282 HRKFAEPLAALALAFFVVSLAVFAFRSGQ-NLGLVWALLLSFAYYATWSVFRVMGENGAV 340
Query: 335 LPVAAALIPVILTISLSILIL 355
PV AA P ++ + +L+L
Sbjct: 341 PPVLAAYAPDLIAVLAGLLLL 361
>gi|325971216|ref|YP_004247407.1| permease YjgP/YjgQ family protein [Spirochaeta sp. Buddy]
gi|324026454|gb|ADY13213.1| permease YjgP/YjgQ family protein [Spirochaeta sp. Buddy]
Length = 420
Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 60/415 (14%), Positives = 130/415 (31%), Gaps = 64/415 (15%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+++R+ + YL + L + F+ + I ++ L L +P
Sbjct: 7 FSLVYRHIGREYLLSFLVAFFFFFFIFFINQILLIAQRIL-LKQVDYFSVLQLVLLSIPQ 65
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ PF +L + +V +L+ +E++ R+ GIS+ + P ++ S+ + T L +
Sbjct: 66 FLLYTFPFSSLTASSMVIGDLSGNNEILAIRSSGISLKHVFIPIIIISLAFSMLTFLTAD 125
Query: 122 PIATSGEKIGIDLIQ---------QWKDNGDKQKSDIIPWMQ--ISNPQQDIFIGAKKIL 170
K +L + N ++ + + N DI + +
Sbjct: 126 KALPWSTKKYRELYTDLMRDLPTLELMANSTNTIANTVMVNKGVEGNTVHDIILFETSSV 185
Query: 171 PENHIWEDFTS-ITIDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQY--------- 216
I + +++ I++ + D +I L K Q+
Sbjct: 186 RGGQILSAPKAEVSLYDLQSFIYQLELDNPLILKSETQGGWALSKAESAQFFLNFSGQIA 245
Query: 217 ---GRIPIDKNSTTLNIPIKMDGFQKFSE--------QFASRSFYEIIKKMSFSNKSNIF 265
+P + L I+ +E Q S E++ K + ++
Sbjct: 246 SIASALPSQLSIKELQQNIQEHKIALQAEKKRYQEKVQTLELSLAELVDKAKTDAEVSVS 305
Query: 266 HNYRAETQ--------------------FYFLIVIPLMLVAMTLIAASVSLEFSR-SNQP 304
H E Q + + + + + SL F R +
Sbjct: 306 HIEELEVQLKQLKDQKPINFYYQYYRAELHKKYALSAACFMLVFL--TFSLSFFRVKHGR 363
Query: 305 RIIVAYGIFSGFMLYTIITIM--KSFGKSGILLPVAAALIPVILTISLSILILLQ 357
I + + + ++ + F S + P P +L +L LL
Sbjct: 364 LIGFGLSMLVAVVYWYLLFFAQMQIFSLS--ISPALLIWSPNLLMFFGGLLFLLH 416
>gi|225849792|ref|YP_002730026.1| putative permease, YjgP/YjgQ family [Persephonella marina EX-H1]
gi|225646703|gb|ACO04889.1| putative permease, YjgP/YjgQ family [Persephonella marina EX-H1]
Length = 356
Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/356 (13%), Positives = 125/356 (35%), Gaps = 14/356 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY +K L L + + +L E+ + +L Y +S + ++P +
Sbjct: 3 ILDRYLYKKLTVYLLVVLPSFSFVAVLAELIEVLRKAKQLDIYYLS---LYILYQLPEKV 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P ++ I++ +L + E+ GIS+ L + + L ++ + I
Sbjct: 60 YYILPISAVIAFILLAKDLIESKEIYPILLNGISLKSLATKLFIFPLFLSFLQIINLELI 119
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +K + K+ +++ + + + ++ + + +D I
Sbjct: 120 MPTAKKEVEKVYSILKNRPPEEEKYLFAYNRWITLDSKSYMYFRFLDFNKREGKDLIFIQ 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP----IDKNSTTLNIPIKMDGFQK 239
D+ + R + + I + ++ I + + + + +K
Sbjct: 180 FDENYNPVLRIEGNRFKIKGRSILIQNGKIIDLSDIFSFNYRRFKTFDFPVAVDIKNLKK 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ S ++ + + K + ++FY + + ++++ +S
Sbjct: 240 LVKVKKPVSILQLYRSAVIAEK-FGYPAGYYWSKFYSKLATVFSALILSIV--VFPFLWS 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R I I + + + S +SG + P L ++ + + + L
Sbjct: 297 RKKDKLFIAFASII---VYWYGTAFIASMAESGAV-PYITVLFVDLVYLMVGLFFL 348
>gi|86131956|ref|ZP_01050553.1| predicted permease YjgP/YjgQ family [Dokdonia donghaensis MED134]
gi|85817778|gb|EAQ38952.1| predicted permease YjgP/YjgQ family [Dokdonia donghaensis MED134]
Length = 552
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/201 (15%), Positives = 69/201 (34%), Gaps = 6/201 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY F ++KT L M + + + ++ + +P +
Sbjct: 2 KILDRYIFFTFVKTFLSIFTILMFIFVLQSVWLYIQELAGR-DLDFDVILKFLLFAMPSL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++P L+ +I+ F N E ++ GIS+ + + + I LGI + L N
Sbjct: 61 VTLVLPLSVLLTSIMTFGNFAENYEFAAMKSTGISLQRAMKSVIFFIIFLGIASFLFANY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + +L + ++ + A+K + D I
Sbjct: 121 VIPASQYEFRNLRNNIGKMKPAMLIRSGQFNEVGDDFNMRV--AEKYGDRDQYLRDV-VI 177
Query: 183 TIDKKNKI--IHRKDADLAII 201
+K ++ A +
Sbjct: 178 HQKEKGRLGNYTVIVAKEGEL 198
Score = 45.6 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 10/87 (11%), Positives = 29/87 (33%), Gaps = 1/87 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ E + V+ + + + A + R + + G+ + I K+
Sbjct: 364 SKFEISLHEKYVLGFSCILLFFVGAPLGA-IIRKGGLGLPIVIGVVLFLTFHFIGIFAKN 422
Query: 328 FGKSGILLPVAAALIPVILTISLSILI 354
+ + P A+ + + L + +
Sbjct: 423 SAEDNSISPFIASWLSTFILFPLGVYL 449
>gi|269213540|ref|ZP_06158031.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
gi|269146392|gb|EEZ72810.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
Length = 181
Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 2/156 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y+ + A ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGK-GSYNGATMAQYVLMQMPAR 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ +V L SEL + +A G+S +LL ++ I T +
Sbjct: 61 AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLVLSQFGLIFAIATAALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP 158
IA + ++ NG + W++
Sbjct: 121 IAPVLSQKAENIKSTA-INGKISTGNTGLWLKEKTA 155
>gi|192359904|ref|YP_001981938.1| putative permease, YjgP/YjgQ family superfamily [Cellvibrio
japonicus Ueda107]
gi|190686069|gb|ACE83747.1| putative permease, YjgP/YjgQ family superfamily [Cellvibrio
japonicus Ueda107]
Length = 366
Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 54/360 (15%), Positives = 133/360 (36%), Gaps = 28/360 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T+L + ++ + + ++ + A R+ ++
Sbjct: 2 IIFRYLSRDLLLTSLAVSAVLFTIFLTGKFSDYLDDAAQ-GKLAVDVLFTIIAYRMTGLL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++ + + SE+V+ A GIS QL+ +V S L+ L +
Sbjct: 61 ELILPLGFYLAILLAYGRMYMDSEMVVLSACGISPGQLVGMTLVPSALIAAIVALFSFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE------ 177
+ G ++ + + ++ + + + S Q I + + +N + +
Sbjct: 121 SPLGAQLTEQTLAEQRNRSEFESMQPGRF--QSLGQGKIMAYVESLSDDNRLLQHVFVAH 178
Query: 178 ----DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
D ++I + + ++R D + L + YQ + T +
Sbjct: 179 QEGPDSSAIVVAETGTQMYRPD-----YGQRYLVLNQGYRYQGKPGTNEFTIT------R 227
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + ++ S + E+ + + + + + I +P+M++ TL+A
Sbjct: 228 FEDWGRYLPPTTSVAEIELKSDAKTTAQLFRAEDNESIATLQWRISMPIMVLIATLLAVP 287
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL---IPVILTISL 350
+S R + ++ + F L +I + G L P +P ++ L
Sbjct: 288 LSKTNPRQGRYLKMLPAILVYVFYLTFLINARSAI-TKGNLNPALGMWVVHLPFLVIALL 346
>gi|187918662|ref|YP_001884228.1| hypothetical protein BH0808 [Borrelia hermsii DAH]
gi|119861510|gb|AAX17305.1| hypothetical protein BH0808 [Borrelia hermsii DAH]
Length = 355
Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 53/341 (15%), Positives = 116/341 (34%), Gaps = 15/341 (4%)
Query: 16 TTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVN 75
T L+ +IL+ + DL + N SIS + +P + L
Sbjct: 14 TFLFMNFLFVILIVLFDLFTNLFTYLDH-NLSISDIIYIYYLYLPKCFSDGLALSFLFAV 72
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
+ NL+ +E++ + GISI ++L ++ S+ + + N + +
Sbjct: 73 SNLIGNLSMRNEIIGLFSCGISISRILRSIIMLSVFISVLLFFFDNYLVIDTVTKRDAFL 132
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKD 195
+ + +II + EN I + I D+ + R D
Sbjct: 133 KNSIGSKGANDRNIII-----KDFAREIYNIRHYDIENDIIANLMIILKDQNDNFKKRYD 187
Query: 196 ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-----IPIKMDGFQKFSEQFASRSFY 250
A N + +L V E+ + + + + ++ + + + +F
Sbjct: 188 ISKAEWTNSRWRLYGVREFSKVERDVIEKFHEVLDGGGIVNLEPEYIKIIMLSSKTLNFS 247
Query: 251 EIIKKMSFSNKSNIFHNYRA-ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVA 309
++I + + N+ + + L+L++ T+ S +L+ + +
Sbjct: 248 KLISWIGALRRENLDSSEALFDFFSRIFFSFRLILLSFTVGFVSFALKKNIF---IWSLL 304
Query: 310 YGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
I + I + G L A+ +P IL I +
Sbjct: 305 NSIAFAVVYVISIMVFSFLADLGYLPIFVASSLPTILFIII 345
>gi|296122759|ref|YP_003630537.1| permease YjgP/YjgQ family protein [Planctomyces limnophilus DSM
3776]
gi|296015099|gb|ADG68338.1| permease YjgP/YjgQ family protein [Planctomyces limnophilus DSM
3776]
Length = 394
Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 59/401 (14%), Positives = 134/401 (33%), Gaps = 54/401 (13%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L RY LK G +L+ + + G + + +P
Sbjct: 1 MMPLLQRYILVDLLKVFAVSAAGFTLLLVFAGVYVEAKEHG----LGPMQILQILPFIIP 56
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ IP L+ VV+ L+ E++ ++A GI I +L P + ++L IFT+++
Sbjct: 57 TLLPFTIPTALLLTVCVVYGRLSGDQEIIAAKAAGIHIISVLWPAFLLGVVLSIFTLVIT 116
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + K I ++ + + + I + + + T
Sbjct: 117 DQMIPWSMKRIQRTIAMAVEDIFFDVLKAQNQLNLRDQGLSITVMDVR----DRTLYMPT 172
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL--------NIPI 232
+ NK + A A + D + V+E++ G I + ++ T P+
Sbjct: 173 -FRYMRGNKPVT-VQAKEARLRFDLDRDVVVMEFKDGYISLPDDANTRVRFRYDAREFPL 230
Query: 233 KMDGFQKFSEQFASRSF---------------YEIIKKMSFSNKSNIFHN--------YR 269
+ S SR ++ + + S F R
Sbjct: 231 PNRSQKAKSRDMTSREILAETRAMATGDATATRQLAIEAALILASGDFDRFGEKEFAVSR 290
Query: 270 AET------------QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ + + I + L+ A ++ +++ + + +
Sbjct: 291 YQVDEERNRSMKLTTELHNRISMAFGCFFFVLVGAPFAVYMAKNQFLTSFLFCFVPILVV 350
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
Y + + ++ K G + P A +P ++L L ++++
Sbjct: 351 YYPLSMMAQNLSKVGKVDPSWAVWLPNG-ALTLGFLYIIRQ 390
>gi|320451334|ref|YP_004203430.1| hypothetical protein TSC_c22790 [Thermus scotoductus SA-01]
gi|320151503|gb|ADW22881.1| hypothetical membrane spanning protein [Thermus scotoductus SA-01]
Length = 336
Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 50/350 (14%), Positives = 115/350 (32%), Gaps = 20/350 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L L +L + L+ DL + + + A L R+P +
Sbjct: 2 LGRYVLKEVLVPYLVGVLLFVALL-TFDLLSSLSGVLLSRGAGVEAIAKLILYRLPWTLS 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + +V L R SEL + A G+ W LL P + ++L+ F ++ + +
Sbjct: 61 LALPLGLVFAILVGLARLIRQSELKAAYAAGVPPWALLKPLALLALLVSFFNLVNLAELR 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + + + + A+++ PE + +
Sbjct: 121 PKALEAYDQHLARLLYGEGGLSGVLRKQL--YAAEGLGVYYAEEVRPEVGQNRLYGIRVV 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D++ +I + + + + G+ + + + +
Sbjct: 179 DERGRIYS---GQEGVWDKEGWHFRG-YVLEGGKPKPFAGTLPFPTQFRPKESLGSRDPY 234
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S + E+ ++ + Y + L + L+AA++ L F +
Sbjct: 235 DSTTLRELWERSQVEPSA--------RFALYRRLADALGGFFLGLVAAALGLSFR---EA 283
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ F Y + T+ + + + A +P +L + +
Sbjct: 284 AWAFLSIVLLIFGYYVLWTLSAQLARYDVNPLL--AFLPNAFFAALGLYL 331
>gi|218885480|ref|YP_002434801.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756434|gb|ACL07333.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 379
Score = 93.4 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 37/333 (11%), Positives = 115/333 (34%), Gaps = 18/333 (5%)
Query: 36 IQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIG 95
++ + ++ +L P + ++P ++ + F ++ ELV +A G
Sbjct: 23 QLRELFLGLDLGLADAVLLFVYLTPFFMLLVVPVACMLSVFLTFLRMSTDRELVALKAGG 82
Query: 96 ISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI 155
+S++Q+L ++ +L + T+ + G + ++ + + +
Sbjct: 83 VSLYQMLAAPLLFCVLCTLLTLGISLQGLAWGMANFRATVMDIANSRARVVVQPGVFNKD 142
Query: 156 SNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK------VKLK 209
+ + A+++ P ++ +++ + A I D+ +L+
Sbjct: 143 IPG---LTLFARQVDPADNRLSQVIVEDRSREDSTLT-ILAPTGAIATDEARGELLFRLQ 198
Query: 210 KVVEYQYGRIPID---KNSTTLNIPIKMDGFQKFSEQFASRSF-YEIIKKMSFSNKSNIF 265
Y+ + + I + + + + +E ++ + +
Sbjct: 199 NGRLYKTEGQQVSVLGFGEYVVRIDLGLMFKGLDLGRVKPKELSWEQLRALPLDDGKGNV 258
Query: 266 HNYRAE---TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
+ + + V P + + L A ++ F + V + + Y+++
Sbjct: 259 DDKLLRKVAVEVHKRWVFPAACLVLGLFAMPLACAFE-GLHRQFGVVLALLMFLVYYSLL 317
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + G++G + P P +L + + L
Sbjct: 318 SFGLTTGEAGTIAPEVGLWTPNVLFLGAGLWGL 350
>gi|313672806|ref|YP_004050917.1| permease yjgp/yjgq family protein [Calditerrivibrio nitroreducens
DSM 19672]
gi|312939562|gb|ADR18754.1| permease YjgP/YjgQ family protein [Calditerrivibrio nitroreducens
DSM 19672]
Length = 345
Score = 93.4 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 62/355 (17%), Positives = 127/355 (35%), Gaps = 28/355 (7%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y + + + + ++ + ++ + + N +P +
Sbjct: 4 LSKYILEEIYPIFIISNIFFIFILLFDKVVDLTDLVFSK-NVPTIIIIETFIFYLPSFMM 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IP L+ + L+ +ELV+ +++G+S LL P + IL + L +
Sbjct: 63 VTIPTSALLAVMTAHNRLSSDAELVVMKSLGLSPMSLLKPTIYFGILATLLAFLTSFYLL 122
Query: 125 TSGEKIGI-DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G K I +L + + K + + +I + I I KK + +N + T I
Sbjct: 123 PYGNKYAIYNLKRTVEYVSLKDIKENEFYKEIPS----IAIYVKKKVDDNKFLQ-ITLID 177
Query: 184 IDKKNKIIHRKDAD-LAIIYNDKVKLKKVVEYQ-----YGRIPIDKNSTTLNIPIKMDGF 237
+K +I +AD LK Q YG+I K +N+ ++
Sbjct: 178 -EKGGSLITAAEADAYQKFGAVVFDLKNGAIIQGKNDRYGKIEFKKFYFVVNVDSNLNRE 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
K S Y + +F + +P + M L+ ++ +
Sbjct: 237 IKSERFMFMDELI-----------SRFNDGYIYKFEFSKRVALPFSTLIMALLGLNMGVF 285
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
F R+N+ + + F I+ + ++ +G + P A I + LS+
Sbjct: 286 FHRANRSINWI-IALGIIFSYNVIMFMSENL--AGKINPYFAPWIANTIFAFLSL 337
>gi|51599060|ref|YP_073248.1| hypothetical protein BG0834 [Borrelia garinii PBi]
gi|51573631|gb|AAU07656.1| hypothetical protein BG0834 [Borrelia garinii PBi]
Length = 355
Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 57/356 (16%), Positives = 126/356 (35%), Gaps = 23/356 (6%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
F K + T L L MIL+ + D + + + + N + +P +
Sbjct: 7 FVKSIILTFLSMNLLFMILIILGDLFVNLLSYLEK--NIGFKDILYIYYLYLPKAFSDGV 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
L + NL+ +E++ + G+S+ ++L P ++ S+ + N +
Sbjct: 65 ALSFLFAISNLIGNLSMRNEIIGLFSCGVSLTRILRPIILISLFISFVLFFFDNYLVIDT 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
LI+ G+ + SD ++ + K + + + I D K
Sbjct: 125 VARRDLLIKN--SIGNSRSSDKTIIIRDLARE---IYNIKSYDINENAFSNLMIIIKDSK 179
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-----IPIKMDGFQKFSE 242
++ R D D A ++K +L + E+ I +N+ + I ++ D +
Sbjct: 180 DEFQTRYDIDKAEWKDNKWRLYGIREFVKVGRKIKENAYDILDGTGIIKLEPDYIRTVML 239
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF---- 298
+ +F ++I +SF ++ + L+ + L+ S ++ F
Sbjct: 240 SSKALNFTKLINWISFLKSEHLN----YSDALFDLLNRVFFSFRLILL--SFTVGFIALA 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ N + + I + I I G L A+ I + ++ +
Sbjct: 294 LKKNIFILSLLNSIAFAVVYVISIVIFNFLADLGYLHIYVASSFTTIFFLIINFFV 349
>gi|87310838|ref|ZP_01092964.1| hypothetical protein DSM3645_18031 [Blastopirellula marina DSM
3645]
gi|87286353|gb|EAQ78261.1| hypothetical protein DSM3645_18031 [Blastopirellula marina DSM
3645]
Length = 389
Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 54/389 (13%), Positives = 128/389 (32%), Gaps = 45/389 (11%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY LK L +L+ ++ + + + G A + +P +
Sbjct: 3 IITRYILWEILKIFFLALGALTLLIVLVGVVQQALREG----LGPGPIARIIPYMIPDAL 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ IP L + V+ L +EL +A G+S L P +++L I V + +
Sbjct: 59 RFSIPGTILFASCSVYGRLASGNELAALKAAGVSPLAALWPGYAIALVLSIACVWLNDIG 118
Query: 124 ATSGEKIGIDLIQQ---------WKDNGDKQKSDIIPWMQISNPQQ----DIFIGAKKIL 170
+ G + ++ Q + + + ++ + ++ I A
Sbjct: 119 VSWGSQGVRRVLVQSFEEIAYGMLRTHKSFSSDKLSILVREVDGRRLMRPQIVAAATPTS 178
Query: 171 PENHIWEDFTSITIDKKNKII-----HRKDAD---LAIIYNDKVKLKKVVEYQYGRIPID 222
P+ I + D+ +++I R ++D + + ++ VV P
Sbjct: 179 PQLLISAAEAELHSDENHQLIISLIDSRIESDGSQQGVFEHPG-RMDHVVSLSDELSPEH 237
Query: 223 KNSTTLNIPIKMDGFQKFS-------EQFASRSFYEIIKKMSFSNKSNIFHNY------- 268
++ + + ++ E + S + I + + ++ F
Sbjct: 238 RSPSKILSSRIPQVLREERQIVQTQKEADIAWSAFAQIATLDAAQRTPPFDISYINSQIN 297
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSL--EFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
R T+ + + L+ +++ + + F Y ++
Sbjct: 298 RLRTEPWRRWANGFSCLFFVLLGVPLAIKQRNPDFVTSFFMAFLPVLLVF--YPLLAFAV 355
Query: 327 SFGKSGILLPVAAALIPVILTISLSILIL 355
K G + P A I + + +S+ L
Sbjct: 356 DRAKDGAVPPQ-AVWIGNVALLLVSLYYL 383
>gi|262382624|ref|ZP_06075761.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262295502|gb|EEY83433.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 658
Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 34/263 (12%), Positives = 90/263 (34%), Gaps = 10/263 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSIS--RGAVLAATRV 59
L+ + + +L L G + + ++ + + ++ + A +
Sbjct: 4 IKRLYTFMLQTFLPLFLMTF-GICLFIVLMQF--LWRYIDDMVGKGLGIPVLAEMFMYAA 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
++ +P L+ +++ F NL EL+ ++ G+S+ ++ P +V + + +
Sbjct: 61 LFLVPMALPLAILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFF 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
N + + L+ + + + + + KK P++ + +D
Sbjct: 121 QNNVMPVVQVKLYTLLYSMRQKSPELDIPEGSFYKDIPG---FNVYVKKKDPKDGLLKDV 177
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ AD + KL V+ G + + N
Sbjct: 178 MIYDYSEGFNNARVIVADSGRLKTSADKLFLVLSLFNGESFENVGKSQANTTQARTAVPY 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKS 262
E F+S+ +I+ + N++
Sbjct: 238 RRESFSSKDI--LIEFDANFNRT 258
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 10/87 (11%), Positives = 26/87 (29%), Gaps = 1/87 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R T+++ + + I A + R + V + Y I +
Sbjct: 384 RRHLTEWHKKFTVSFACIMFFFIGAPLGA-IIRKGGLGVPVVISVILFIFYYIIDNMGFK 442
Query: 328 FGKSGILLPVAAALIPVILTISLSILI 354
+ G+ + ++ + I +
Sbjct: 443 MARDGVWDAWEGMWLSSVVLTPMGIFL 469
>gi|307294585|ref|ZP_07574427.1| permease YjgP/YjgQ family protein [Sphingobium chlorophenolicum
L-1]
gi|306879059|gb|EFN10277.1| permease YjgP/YjgQ family protein [Sphingobium chlorophenolicum
L-1]
Length = 406
Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 59/364 (16%), Positives = 136/364 (37%), Gaps = 16/364 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M RY + L L+ + +L+ + + + + + +S + A +P
Sbjct: 1 MLTATDRYLARLIALPMLGTLVISAMLLVLDKMLSLFDFVAAEGG-PVSVVWRMLANMMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IP ++ ++ F L +SEL + RA+G+S +LL + +I L + ++
Sbjct: 60 EYLSLGIPIGLMLGILLAFRKLAMSSELDVMRAVGLSYGRLLRVPYMYAIALALLNFGIV 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ L + + + + +N + + + ++ L E +
Sbjct: 120 GFVQPLSRHAYEALRFELRSGALGASIKVGEF---TNLGKRMTLRIERSLDEGRNLQGIF 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK-----VKLKKVV---EYQYGRIPIDKNSTTLNIPI 232
+ K + + A + D +L+ V + + P + ++ ++PI
Sbjct: 177 VRAMGKDGQTVAVTAAQGEFLATDDPDTIIFRLRDGVLVNDAPKYKSPRILSFSSHDLPI 236
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ--FYFLIVIPLMLVAMTLI 290
+ +KF + R I + + + R E + F+F +V M++ + L
Sbjct: 237 DLPQIEKFRGRDVDRE-KTIPELVMIGHDPGTPDKLRNEIRANFHFRMVEVAMMLLLPLA 295
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A + ++ RS + V I + + + G G + P+ A P +L L
Sbjct: 296 ALAFAIPPKRS-TSALGVFLSIVFIVTYHKVNEYGQGVGSLGKIDPIIALWGPFLLFAGL 354
Query: 351 SILI 354
+ +
Sbjct: 355 ILWM 358
>gi|15639868|ref|NP_219318.1| hypothetical protein TP0883 [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189026106|ref|YP_001933878.1| hypothetical protein TPASS_0883 [Treponema pallidum subsp. pallidum
SS14]
gi|3323200|gb|AAC26573.1| conserved hypothetical integral membrane protein [Treponema
pallidum subsp. pallidum str. Nichols]
gi|189018681|gb|ACD71299.1| hypothetical integral membrane protein [Treponema pallidum subsp.
pallidum SS14]
Length = 365
Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 53/345 (15%), Positives = 107/345 (31%), Gaps = 17/345 (4%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITL 72
+L L+ A +++ ID+ Q Y S + +P + P L
Sbjct: 5 FLPIFFLVLVCASMILDAIDILVNLTQFISN-GYRFSSLVKIWYVSIPHYVLLCCPLSVL 63
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
L +E + G+S + ++ P+ L I N + +
Sbjct: 64 FAATYTVRILYVQNEFLAIHFGGLSFFSIVGPWFGFMCFLAIGIFAFDNSVVVVSQSKKD 123
Query: 133 DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIH 192
++I + + + S+ I A + D I + I
Sbjct: 124 EIIARTVSYAQGNSENDVVA---SSFDGKIISIAGAYHRGQKVLVDMLVIMKNSNGTIQK 180
Query: 193 RKDADLAIIYNDKVKLKKVVEYQYGR-----IPIDKNSTTLNIPIKMDGFQKFSEQ-FAS 246
+A A D+ L K V Y + +S L P+++ Q F + +
Sbjct: 181 LIEAHTAHWQKDRWVLIKPVVYTITHEMKLMVSEYLDSFELREPLELFDHQDFLTKGMSI 240
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-ASVSLEFSRSNQPR 305
+ E + + +++K + +FY PL + M ++ + S RS
Sbjct: 241 QKIKETLHTLKYASKPH----RELSIRFYKKFYFPLTMCIMLCLSFLTGSFLKKRS--LI 294
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ + + Y + + P PV+ + L
Sbjct: 295 MYIFCSVVLASAYYVVEMTSIVCAREEYFSPFWGVFFPVLTFLFL 339
>gi|221133510|ref|ZP_03559815.1| permease YjgP/YjgQ [Glaciecola sp. HTCC2999]
Length = 389
Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 53/370 (14%), Positives = 116/370 (31%), Gaps = 35/370 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K K+ M + + + + S A P++
Sbjct: 2 IIFRYLLKETFKSQFAIFFILMAIFITLRFVRVLGDATD-GEIPASLVMGFLALYSPVLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW---QLLNPFVVGSILLGIFTVLVI 120
I+P + ++ SE+ + +A G+S W +++ V LL + +
Sbjct: 61 SLILPISFFLGIMMAHGRFYVDSEMTVLQACGVSEWYVTRVMLLLAVILGLLTASITMYV 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
P+A E + K + + IIP I ++ N+
Sbjct: 121 APLAVESEYQLRE-----KAGSEAGIAAIIPGRFQQTGNDAAVIFVHEVESANNQLTKIF 175
Query: 181 SITIDKKN-KIIHRKDADLAIIY-----NDKVKLKKVVEYQ---YGRIPIDKNSTTLNIP 231
I+ K + + I ++ L+ +Y + N I
Sbjct: 176 LSQINADQPKKVRVIYSQTGTIEVQSDGTQQLILRNGQQYDGSIGQQNYQRVNFDEYRIQ 235
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
I + + A+ E+I ++ A + + I IPL L + LIA
Sbjct: 236 IGEQKVESMRRKVAALPTLELI----------GDNSDEAIAELQWRIAIPLALPFLVLIA 285
Query: 292 ASVS---LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+S R + + + + ++ + + G + + +
Sbjct: 286 VPLSKVNPRQGRFGKLFPAILMYL----GYFLLLMAARRALEDGKIPAGLGLWWVHGIIL 341
Query: 349 SLSILILLQK 358
+ ++L ++
Sbjct: 342 FIGTVLLSRQ 351
>gi|91792232|ref|YP_561883.1| permease YjgP/YjgQ [Shewanella denitrificans OS217]
gi|91714234|gb|ABE54160.1| permease YjgP/YjgQ [Shewanella denitrificans OS217]
Length = 370
Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 48/362 (13%), Positives = 130/362 (35%), Gaps = 24/362 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY LK LL + + + + S L +P +
Sbjct: 2 IVFRYLIAEVLKAQFAVLLVLLTIFISQQFVRVLADASN-GEFPASLVLTLLGLNLPQLT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++ + +E+V+ ++G+S W + ++ ++ +FT ++ +
Sbjct: 61 LLILPLSFFLGILLAHGRMYAENEMVVLHSVGVSEWYVARVTLLIALANLVFTCVLSMYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ E+ ++++ + + ++P + +KI +N + + F +
Sbjct: 121 SPWAEERQNQVLEKAQSEAGLAALVQGRF--QASPNGRAVLFVEKISKDNQLSKVFVAQL 178
Query: 184 IDKKNK--IIHRKDADLAI-----IYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIK 233
D +K + + A I + +++L++ V YQ + + IK
Sbjct: 179 PDPDDKEGMSNVVVAQQGRVIEDSIGSQQLQLERGVRYQGSPQGLAYQVIEFGGYRMEIK 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + ++ S ++ + +F++ IPL + +TLIA
Sbjct: 239 EQEVDERRRKLSALSMEQLNDTQGPEAAA----------EFHWRFAIPLSIPLLTLIAVP 288
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ R + + I + ++ + + ++ I + + +
Sbjct: 289 LARVNVRQGKFAKM-FPAILLYLGYFGLMIAGRKALEDEVIPEYLGMWWIHISVLLMGVF 347
Query: 354 IL 355
+L
Sbjct: 348 LL 349
>gi|254294286|ref|YP_003060309.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
gi|254042817|gb|ACT59612.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
Length = 385
Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/316 (15%), Positives = 117/316 (37%), Gaps = 14/316 (4%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F L+T + + G +++ + + + E S ++ P +I ++
Sbjct: 7 YLFGNVLRTMVSIVGGLVLIALLTQGLTQIDLIVEN-RQSAFTFLYVSMLAAPQVIGLLL 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P V I +R SE+V+++A G+S Q+ +P + + + + + + + +
Sbjct: 66 PIALFVAAIATLNRAHRDSEIVVAQAAGMSRLQIASPVLRIAAIAALLHLCINLWVQPAS 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ + + + + + ++P ++ + K L + S D
Sbjct: 126 YREMRETLTSARTDLAATLVKPGEF---NSPAHNLTVYIGKSLGGGELRTLLISDARDPD 182
Query: 188 NKIIH--RKDADLAIIYNDKVKLKKVVEYQYGRI----PIDKNSTTLNIPIKMDGFQKFS 241
+ R A + + ++ + + + +D +
Sbjct: 183 ANTTYIARTGAVTEVEGVPAILMRNARVQKIDGNGQLWDGTFDQYIYELAAFVDSDTSYV 242
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE--FS 299
+ + R +E++ F+N + + + + + + +PLM + M ++A L FS
Sbjct: 243 LKASDRFLHELL-YPDFNNFYDRDNAEKFYAEGHSRLALPLMNMFMAMLAVVAVLGGDFS 301
Query: 300 RSN-QPRIIVAYGIFS 314
R Q RI VA GI
Sbjct: 302 RRGYQTRISVATGIGL 317
>gi|149173512|ref|ZP_01852142.1| hypothetical protein PM8797T_22248 [Planctomyces maris DSM 8797]
gi|148847694|gb|EDL62027.1| hypothetical protein PM8797T_22248 [Planctomyces maris DSM 8797]
Length = 388
Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats.
Identities = 59/382 (15%), Positives = 115/382 (30%), Gaps = 33/382 (8%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNY--------------- 46
RY K Y + + L V D +
Sbjct: 5 FTTFDRYLLKRYFHVFVIGFIATYGLYVVFDGFTNIDGFQAGAEKVSSNDLNGLEVDQNA 64
Query: 47 ---SISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L I P ++++ +VVF + R EL + GI ++L
Sbjct: 65 STSLLWIMLEFYFYQSSLFFDMISPILSVLAGVVVFSLMVRHGELNPVLSAGIPTYRLAI 124
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
P + +I++ L I S + + +I Q++F
Sbjct: 125 PLAMATIIVNCVMCLNQEVIIPSIADKLQAERGDMASSAQFVEPVYDFSTRIMINGQEVF 184
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVV---------EY 214
+ +K+ + LK+ E+
Sbjct: 185 LTEQKMKNAEFVLSKPMVHDFVTVKSDTAIYQTPTQT-RPGGWLLKQATPSYQELEIAEF 243
Query: 215 QYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS-RSFYEIIKKMSFSNKSNIFHNYRAETQ 273
I + I + Q + F+S S ++I +++ + S++ + +
Sbjct: 244 AREIIQPGPEPNEIFIVTDVGCDQLCNRNFSSLISTSDLIARINNPSFSDL-SIRKQKLD 302
Query: 274 FYFLIVIPLMLVAMTLIAASVSLEF-SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG 332
+ + P+M + LI+ L SRS I + + G L+ I G +
Sbjct: 303 LHSRLTRPIMNLIAVLISIPFVLRKESRSLILNIAICACVMGG--LFGISQCFLYMGSTK 360
Query: 333 ILLPVAAALIPVILTISLSILI 354
++ P AA PVI +L+
Sbjct: 361 LISPDQAAWFPVITNGTLAAWF 382
>gi|301308106|ref|ZP_07214060.1| putative permease [Bacteroides sp. 20_3]
gi|300833576|gb|EFK64192.1| putative permease [Bacteroides sp. 20_3]
Length = 651
Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 34/263 (12%), Positives = 90/263 (34%), Gaps = 10/263 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSIS--RGAVLAATRV 59
L+ + + +L L G + + ++ + + ++ + A +
Sbjct: 4 IKRLYTFMLQTFLPLFLMTF-GICLFIVLMQF--LWRYIDDMVGKGLGIPVLAEMFMYAA 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
++ +P L+ +++ F NL EL+ ++ G+S+ ++ P +V + + +
Sbjct: 61 LFLVPMALPLAILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFF 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
N + + L+ + + + + + KK P++ + +D
Sbjct: 121 QNNVMPVVQVKLYTLLYSMRQKSPELDIPEGSFYKDIPG---FNVYVKKKDPKDGLLKDV 177
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ AD + KL V+ G + + N
Sbjct: 178 MIYDYSEGFNNARVIVADSGRLKTSADKLFLVLSLFNGESFENVGKSQANTTQARTAVPY 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKS 262
E F+S+ +I+ + N++
Sbjct: 238 RRESFSSKDI--LIEFDANFNRT 258
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 10/87 (11%), Positives = 26/87 (29%), Gaps = 1/87 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R T+++ + + I A + R + V + Y I +
Sbjct: 384 RRHLTEWHKKFTVSFACIMFFFIGAPLGA-IIRKGGLGVPVVISVILFIFYYIIDNMGFK 442
Query: 328 FGKSGILLPVAAALIPVILTISLSILI 354
+ G+ + ++ + I +
Sbjct: 443 MARDGVWDAWEGMWLSSVVLTPMGIFL 469
>gi|258542097|ref|YP_003187530.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
gi|256633175|dbj|BAH99150.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
gi|256636232|dbj|BAI02201.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
gi|256639287|dbj|BAI05249.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
gi|256642341|dbj|BAI08296.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
gi|256645396|dbj|BAI11344.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
gi|256648451|dbj|BAI14392.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
gi|256651504|dbj|BAI17438.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654495|dbj|BAI20422.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
Length = 401
Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 50/362 (13%), Positives = 122/362 (33%), Gaps = 22/362 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY F L L G L++++ + + + S+ L + +P
Sbjct: 31 FLTLDRYVFHQLLVALLATTGGLAALIWLMQSLRFVSLVVDR-GLSLRVFIELTSLLIPS 89
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI---LLGIFTVL 118
+ ++P T VV++ V+ L EL + +A G+S + L + ++ ++G L
Sbjct: 90 FVAVVLPITTFVVSLFVYQRLAGDRELTVMQAAGLSQFALARAGLGCALMATIMGFLLNL 149
Query: 119 VINPIATSGEKIGI-----DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
I P + + + G K + I + D + + +
Sbjct: 150 WIVPTSYHAFRQYEFDIRNKMAAFMLQEGVFTKVSDAMTVYIRSRSHDGTLHGIMVEDDR 209
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
T + ++ D I+Y+ ++ + + ++S L+ +
Sbjct: 210 QPGNQATIL--ANHGSMMIVNDTPRVILYDGSRQVIDHKTGRLNMLVFKQDSMDLSSAHQ 267
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
D + + + + S + + + + + + PL + ++
Sbjct: 268 EDARFRDAAEMSLGELL-HPDPQQVSER----DTGKFKVEGWRRLTSPLTCFSFAMVGLV 322
Query: 294 VSLE--FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG--KSGILLPV-AAALIPVILTI 348
L FSR + + L I ++++ ++ + AL+P ++
Sbjct: 323 AVLRGAFSRYGNI-KRPLAAVLTVVGLLAINLLLQNLASRNMALIPLIPLVALLPGLICA 381
Query: 349 SL 350
+
Sbjct: 382 GI 383
>gi|298374434|ref|ZP_06984392.1| permease [Bacteroides sp. 3_1_19]
gi|298268802|gb|EFI10457.1| permease [Bacteroides sp. 3_1_19]
Length = 651
Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 34/263 (12%), Positives = 90/263 (34%), Gaps = 10/263 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSIS--RGAVLAATRV 59
L+ + + +L L G + + ++ + + ++ + A +
Sbjct: 4 IKRLYTFMLQTFLPLFLMTF-GICLFIVLMQF--LWRYIDDMVGKGLGIPVLAEMFMYAA 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
++ +P L+ +++ F NL EL+ ++ G+S+ ++ P +V + + +
Sbjct: 61 LFLVPMALPLAILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFF 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
N + + L+ + + + + + KK P++ + +D
Sbjct: 121 QNNVMPVVQVKLYTLLYSMRQKSPELDIPEGSFYKDIPG---FNVYVKKKDPKDGLLKDV 177
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ AD + KL V+ G + + N
Sbjct: 178 MIYDYSEGFNNARVIVADSGRLKTSADKLFLVLSLFNGESFENVGKSQANTTQARTAVPY 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKS 262
E F+S+ +I+ + N++
Sbjct: 238 RRESFSSKDI--LIEFDANFNRT 258
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 10/87 (11%), Positives = 26/87 (29%), Gaps = 1/87 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R T+++ + + I A + R + V + Y I +
Sbjct: 384 RRHLTEWHKKFTVSFACIMFFFIGAPLGA-IIRKGGLGVPVVISVILFIFYYIIDNMGFK 442
Query: 328 FGKSGILLPVAAALIPVILTISLSILI 354
+ G+ + ++ + I +
Sbjct: 443 MARDGVWDAWEGMWLSSVVLTPMGIFL 469
>gi|150010074|ref|YP_001304817.1| hypothetical protein BDI_3493 [Parabacteroides distasonis ATCC
8503]
gi|256838884|ref|ZP_05544394.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|149938498|gb|ABR45195.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
gi|256739803|gb|EEU53127.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 651
Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 34/263 (12%), Positives = 90/263 (34%), Gaps = 10/263 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSIS--RGAVLAATRV 59
L+ + + +L L G + + ++ + + ++ + A +
Sbjct: 4 IKRLYTFMLQTFLPLFLMTF-GICLFIVLMQF--LWRYIDDMVGKGLGIPVLAEMFMYAA 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
++ +P L+ +++ F NL EL+ ++ G+S+ ++ P +V + + +
Sbjct: 61 LFLVPMALPLAILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFF 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
N + + L+ + + + + + KK P++ + +D
Sbjct: 121 QNNVMPVVQVKLYTLLYSMRQKSPELDIPEGSFYKDIPG---FNVYVKKKDPKDGLLKDV 177
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ AD + KL V+ G + + N
Sbjct: 178 MIYDYSEGFNNARVIVADSGRLKTSADKLFLVLSLFNGESFENVGKSQANTTQARTAVPY 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKS 262
E F+S+ +I+ + N++
Sbjct: 238 RRESFSSKDI--LIEFDANFNRT 258
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 10/87 (11%), Positives = 26/87 (29%), Gaps = 1/87 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R T+++ + + I A + R + V + Y I +
Sbjct: 384 RRHLTEWHKKFTVSFACIMFFFIGAPLGA-IIRKGGLGVPVVISVILFIFYYIIDNMGFK 442
Query: 328 FGKSGILLPVAAALIPVILTISLSILI 354
+ G+ + ++ + I +
Sbjct: 443 MARDGVWDAWEGMWLSSVVLTPMGIFL 469
>gi|329114150|ref|ZP_08242912.1| Hypothetical protein APO_0930 [Acetobacter pomorum DM001]
gi|326696226|gb|EGE47905.1| Hypothetical protein APO_0930 [Acetobacter pomorum DM001]
Length = 401
Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 51/362 (14%), Positives = 126/362 (34%), Gaps = 22/362 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY F L L G L++++ + + + S+ L + +P
Sbjct: 31 FLTLDRYVFHQLLVALLATTGGLAALIWLMQSLRFVSLVVDR-GLSLRVFIELTSLLIPS 89
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI---LLGIFTVL 118
+ ++P T VV++ V+ L EL + +A G+S + L + ++ ++G L
Sbjct: 90 FVAVVLPITTFVVSLFVYQRLAGDRELTVMQAAGLSQFALAKAGLGCALMATIMGFLLNL 149
Query: 119 VINPIATSGEKIGI-----DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
I P + + + G K + I + D + + +
Sbjct: 150 WIVPTSYHAFRQYEFDIRNKMAAFMLQEGVFTKVSDAMTVYIRSRSHDGTLHGIMVEDDR 209
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
T + ++ D I+Y+ ++ + + ++S L+ +
Sbjct: 210 QPGNQATIL--ANHGSMMIVNDTPRVILYDGSRQVIDHKTGRLNMLVFKQDSMDLSSAHQ 267
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
D + + + S E++ + ++ + + + + + PL + ++
Sbjct: 268 EDARFRDAAEM---SLGELLH--PDPQQVSVRDTGKFKVEGWRRLTSPLTCFSFAMVGLV 322
Query: 294 VSLE--FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG--KSGILLPV-AAALIPVILTI 348
L FSR + + L I ++++ ++ + AL+P ++
Sbjct: 323 AVLRGAFSRYGNI-KRPLAAVLTVVGLLAINLLLQNLASRNMALIPLIPLVALLPGLICA 381
Query: 349 SL 350
+
Sbjct: 382 GI 383
>gi|319955107|ref|YP_004166374.1| permease yjgp/yjgq family protein [Cellulophaga algicola DSM 14237]
gi|319423767|gb|ADV50876.1| permease YjgP/YjgQ family protein [Cellulophaga algicola DSM 14237]
Length = 493
Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/198 (12%), Positives = 67/198 (33%), Gaps = 2/198 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY +L M++ + + + + +P ++
Sbjct: 3 ILDRYLLSRFLYNFFSSFAILMLIFVFQTIWLFIDDLAGR-GLDVMIILKFLFYIMPNLM 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++++P L+ +I+ F ++ E +A GIS+ + + P ++ +LG+ N +
Sbjct: 62 EKVLPLTVLLASILTFGSIAENYEFAAMKASGISLQRSMRPLIIFVCILGVVVFYFANSV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ E+ +L + + + ++ + +K + E+
Sbjct: 122 IPASEQKIYNLRKNIGQVKPSTAIVEGAFSDLEGTNMNMKV-DRKYGDNDRFLENVIIHR 180
Query: 184 IDKKNKIIHRKDADLAII 201
+ A +
Sbjct: 181 KSDNSINNTVIKAKTGEL 198
Score = 56.4 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 2/92 (2%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ + L + + + A + R + + I Y I +++
Sbjct: 378 HIVSLHKKFALGLSCIVLFFVGAPLGA-IIRKGGLGVPMVVAILLFLTYYFIGVFSENYA 436
Query: 330 KSGILLPVAAALIPVILTISLSILILLQ-KED 360
K G + P+ A ++ + L + + + ED
Sbjct: 437 KDGNMSPIIGAWTSTLIMLPLGVFLTKRATED 468
>gi|255012652|ref|ZP_05284778.1| hypothetical protein B2_02000 [Bacteroides sp. 2_1_7]
Length = 641
Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 36/252 (14%), Positives = 86/252 (34%), Gaps = 8/252 (3%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSIS--RGAVLAATRVPLIIQQIIPFI 70
L+T L L + I L + + ++ + A + ++ +P
Sbjct: 2 LQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFLVPMALPLA 61
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
L+ +++ F NL EL+ ++ G+S+ ++ P +V + + + N + +
Sbjct: 62 ILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNNVMPVVQVK 121
Query: 131 GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
L+ + + + + + KK P++ + +D +
Sbjct: 122 LYTLLYSMRQKSPELDIPEGSFYKDIPG---FNVYVKKKDPKDGLLKDVMIYDYSEGFNN 178
Query: 191 IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFY 250
AD + KL V+ G + + N E F+S+
Sbjct: 179 ARVIVADSGRLKTSADKLFLVLSLFNGESFENVGKSQANTTQARTAVPYRRESFSSKDI- 237
Query: 251 EIIKKMSFSNKS 262
+I+ + N++
Sbjct: 238 -LIEFDANFNRT 248
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 10/87 (11%), Positives = 26/87 (29%), Gaps = 1/87 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R T+++ + + I A + R + V + Y I +
Sbjct: 374 RRHLTEWHKKFTVSFACIMFFFIGAPLGA-IIRKGGLGVPVVISVILFIFYYIIDNMGFK 432
Query: 328 FGKSGILLPVAAALIPVILTISLSILI 354
+ G+ + ++ + I +
Sbjct: 433 MARDGVWDAWEGMWLSSVVLTPMGIFL 459
>gi|227114629|ref|ZP_03828285.1| putative permease [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 371
Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 44/366 (12%), Positives = 121/366 (33%), Gaps = 37/366 (10%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ L L +++ F L I + + L VP ++
Sbjct: 2 IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVISLLGLGVPEMV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ LL +V ++ I + + +
Sbjct: 61 QLILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALVLAVFTAIVATINVMWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGD---------KQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
+ + +++ + K N + + + N + F
Sbjct: 121 SPWSSRHQEEVLAEAKANPGMAALVEGQFQSAQGGNAVLFVGNVKGSEFEHVFLAQLRPS 180
Query: 175 IWEDFTSITIDKKNKIIHRKDADL------AIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ + D+ I +D Y L+ + ++
Sbjct: 181 GNARPSVVVADR-GHIKQNEDGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQSV 239
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ +Q + + + A +F++ + + + ++ M
Sbjct: 240 TLN------NSDVQQMDMNTLWH-------------SDAHDARAEFHWRLTLIISVLIMA 280
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+ +S+ R + + + + + + + + ++S G + P+ + ++
Sbjct: 281 LMVVPLSVVNPRQGRV-LSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWVWLTNLMYF 339
Query: 349 SLSILI 354
+++++
Sbjct: 340 GIAVML 345
>gi|51245020|ref|YP_064904.1| hypothetical protein DP1168 [Desulfotalea psychrophila LSv54]
gi|50876057|emb|CAG35897.1| unknown protein [Desulfotalea psychrophila LSv54]
Length = 362
Score = 92.6 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 65/362 (17%), Positives = 130/362 (35%), Gaps = 13/362 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + K L G + L +ID E + E +S +P I+
Sbjct: 3 LLNRYLLGQFFKFFLTVAAGFIALYLLIDFFEKFDNFTE-AGKPLSVVIKYFLFSIPAIV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+ P + L+ ++ LN ++EL +A G+ + ++ P ++G + + + I
Sbjct: 62 DQLGPILILLSGVISLGVLNSSNELTALKAGGLPLRAIIRPIIIGGGAVTLLFMASAQWI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
S + D+ + K I+ + Q+ F + +++ +F+ +
Sbjct: 122 LPSTVAVTNDIWIEGVQG--KTPVGIVRNNRYYYHGQEGFYSFAWKNNKEYLFANFSYSS 179
Query: 184 IDKKNKIIHRKDADLAIIYN--DKVKLKKVV----EYQYGRIPIDKNSTTLNIPIKMDGF 237
DK+ + A A + LK V E + S + P + F
Sbjct: 180 WDKEYGLKEMISATSASWDAKQNSWLLKGGVLQQQESRGSYTTTTFTSRKFHFPETPEAF 239
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + RS ++K N F A F I L+ + + L+ + L
Sbjct: 240 RTPQHAESERSLSALLK--GALNNQIAFEAEEAWGLFLGRISYILLGLPLLLLGLPILLL 297
Query: 298 --FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
I + F + + ++S +G P AA + + I+L + +L
Sbjct: 298 SYQKWGKDLSIAIPASCTMAFSAWAVWGALQSLAIAGKFSPWLAAFLIHAIFITLGLYLL 357
Query: 356 LQ 357
+
Sbjct: 358 RR 359
>gi|254460553|ref|ZP_05073969.1| permease YjgP/YjgQ family protein [Rhodobacterales bacterium
HTCC2083]
gi|206677142|gb|EDZ41629.1| permease YjgP/YjgQ family protein [Rhodobacteraceae bacterium
HTCC2083]
Length = 381
Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 54/375 (14%), Positives = 121/375 (32%), Gaps = 42/375 (11%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY +F L + + ++ + +++ S A +P +I+
Sbjct: 9 DRYVLSQLFVLFGFFSLVLVSVYWINRAVILFDRLIA-DGQPASVFLEFTALSLPNVIRM 67
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P ++ V L SELV+ +A G S W+L P V+ ++G F +++ +
Sbjct: 68 VLPMSAFAASVYVTNRLASESELVVMQATGYSPWRLARPVVMFGFIVGTFMMVLTQYLVP 127
Query: 126 SGEKIGIDLIQQWKDNGDKQ----------KSDIIPWMQISNPQQ---DIFIGAKKILPE 172
S + + + Q + +++ P+ D+F+ ++
Sbjct: 128 SSLEQLRFRENEITGSLSSQLLREGEFMNPTKGVTFYIREITPEGVLKDVFLSDRRNEGR 187
Query: 173 NHIWEDFTSITIDKKNKIIHR-KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+ +++ + D KL K + + +I
Sbjct: 188 TTTYSSVDGFLVNEPTGPKLVMVSGVTHTLNEDTRKLTKTKFTDF----------SYSIS 237
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+D F + E++ K + R + + P++ V LI
Sbjct: 238 SLIDNPGSFYKSLNQYQTLELLLATDVVQKRSGQSTGRILEEAHSRFNQPILCVVAALIG 297
Query: 292 ASVSL--EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF------GKSGILLPVAAALIP 343
S L FSR + I L ++ +++S + + V A
Sbjct: 298 FSTLLLGGFSRFG-VGRQIIGAIL----LLVMVKLVESIVTDPIRANAQLWPLVYA---- 348
Query: 344 VILTISLSILILLQK 358
+ ++ +L
Sbjct: 349 QSVFGFGAVFTMLYL 363
>gi|228472915|ref|ZP_04057672.1| permease [Capnocytophaga gingivalis ATCC 33624]
gi|228275497|gb|EEK14274.1| permease [Capnocytophaga gingivalis ATCC 33624]
Length = 477
Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 63/201 (31%), Gaps = 4/201 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY ++ + L M++ + +++ S A +P +
Sbjct: 2 KILDRYILSRFIFNFISSFLIIMVIFIFQTIWLYVDELVGR-GLSFLVVIKFIALMLPNL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I I+P ++ +I+ + EL +A G+S+ + ++ +LL I N
Sbjct: 61 IPLILPLTVVLSSIMTLGAFGESYELAAMKASGVSLLKATRMLILFMVLLSIGVFFTFNN 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + L K+ + +N Q AKK D
Sbjct: 121 LQPWSNRKFVALRDSIKNKQPSLAISQGIF---NNVQDFSIKVAKKTGENEQYLHDIVIH 177
Query: 183 TIDKKNKIIHRKDADLAIIYN 203
+ A +
Sbjct: 178 KVGINGDTRTVIKAKNGELSG 198
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 2/92 (2%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
I + + + +AA + R + + I Y + K+
Sbjct: 366 YRLTLSDKIALAITCFVLFFVAAPLGA-IIRKGGIGMPLVVAIGLFLSYYFSGLLTKNMA 424
Query: 330 KSGILLPVAAALIPVILTISLSILI-LLQKED 360
+G + P A +P + L + + +L ED
Sbjct: 425 TNGNINPYIAPWVPTFFLLPLGVYLTILVNED 456
>gi|320088911|emb|CBY98669.1| Lipopolysaccharide export system permease protein lptG [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
Length = 158
Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 1/144 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQ 145
+A GE++ + Q G
Sbjct: 123 WVAPQGEQMARNYRAQAMYGGFAA 146
>gi|189425645|ref|YP_001952822.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
gi|189421904|gb|ACD96302.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
Length = 379
Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/350 (12%), Positives = 113/350 (32%), Gaps = 18/350 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + + L +++ + + ++ + ++ L +P +
Sbjct: 5 IINRYLMREIVGIFALGLTIFTLVLLMGRMVKLMEMVVAN-GVPLAEVLRLILLLLPSFL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IP L+ ++ F L+ +E+ + +A G+S+ LL P ++ + + T+ +
Sbjct: 64 VLTIPMAFLLAVLLAFGRLSNDNEITVLKACGLSLGTLLPPVLLTAAAAALLTLFISVVA 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + D K + I + I + + +
Sbjct: 124 VPWGNTGFKQMT---MDVARKYAASAIRERIFRDDLPGIVLYVDQYDEARRTMQRVMIQD 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKV------KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ + A ++ +D+V LK + + S + +
Sbjct: 181 SRDPERPLT-IFAKSGLVSSDEVNGVLRILLKNGSIHTQHKNDYRLVSFGEYL---LTAE 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKS---NIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
S I ++ ++S + T+ + P ++A +
Sbjct: 237 SGRSTPPVRTELDLGIGELQRGSRSPQLAPQARLKMATELHSRFAFPCATFVFAILALPL 296
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
L RS + I + Y +++ +++ + G + P A +P
Sbjct: 297 GLSNRRSGK-GSGFTISILILLVYYVLLSFLRTLAEKGGIPPALAVWLPN 345
>gi|294012648|ref|YP_003546108.1| putative permease [Sphingobium japonicum UT26S]
gi|292675978|dbj|BAI97496.1| putative permease [Sphingobium japonicum UT26S]
Length = 407
Score = 91.8 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 58/364 (15%), Positives = 137/364 (37%), Gaps = 16/364 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M RY + L L+ + +L+ + + + + + +S + A +P
Sbjct: 1 MLTATDRYLARLIALPMLGTLVISAMLLVLDKMLSLFDFVAAEGG-PVSVVWRMLANMMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IP ++ ++ F L +SEL + RA+G+S +LL + +I L + ++
Sbjct: 60 EYLSLGIPIGLMLGILLAFRKLALSSELDVMRAVGLSYGRLLRVPYMFAIALALLNFGIV 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ L + + + + +N + + + ++ L E +
Sbjct: 120 GFVQPLSRHAYEALRFELRSGALGASIKVGEF---TNLGKRMTLRIERSLDEGRNLQGIF 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK-----VKLKKVV---EYQYGRIPIDKNSTTLNIPI 232
+ K + + A + D +L+ V + + P + ++ ++PI
Sbjct: 177 VRAVGKDGQTVAVTAAQGEFLATDDPDTIIFRLRDGVLVNDAPKYKSPRILSFSSHDLPI 236
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ--FYFLIVIPLMLVAMTLI 290
+ ++F + R I + ++ + R E + F+F +V M++ + L
Sbjct: 237 DLPQIERFRGRDVDRE-KTIPELVTIGHDPATPEKLRNEIRANFHFRMVEVAMMLLLPLA 295
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A + ++ RS + V I + + + G G + P+ A P +L L
Sbjct: 296 ALAFAIPPKRS-TSALGVFLSIVFIVTYHKVNEYGQGVGSLGRIDPIIALWGPFLLFAGL 354
Query: 351 SILI 354
+ +
Sbjct: 355 ILWM 358
>gi|91214820|ref|ZP_01251793.1| putative permease [Psychroflexus torquis ATCC 700755]
gi|91187247|gb|EAS73617.1| putative permease [Psychroflexus torquis ATCC 700755]
Length = 516
Score = 91.8 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/259 (17%), Positives = 93/259 (35%), Gaps = 17/259 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY ++KT L M++ + + + + + + +P +
Sbjct: 2 KILDRYILVSFVKTFLSVFTILMLIFILQSVWRFIEEFAGK-DIDLEIISRFLLFLLPNL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I ++P L+ +I+ F + E ++ GIS+ + + +V +LLG T N
Sbjct: 61 IPMVLPLTILLTSIMTFGSFAEQYEFAAMKSAGISLQRAMRSLIVFILLLGAVTFYFANT 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGA-KKILPENHIWEDFTS 181
+ E +++ + N + K + N +I I KK P+ +D
Sbjct: 121 VIPYAEGKVLNM----RKNIAQVKPSLAIIEGAFNDMGNINIKVNKKSGPDGRNLDDV-I 175
Query: 182 ITIDKKNKI--IHRKDADLAIIYNDK------VKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
I +N++ AD ++ + + + L Y +P L P
Sbjct: 176 IHKKSENRVGNYTVIKADHGVLESAETSSVLSLVLYDG--NYYDEVPTKTYQQKLKAPFV 233
Query: 234 MDGFQKFSEQFASRSFYEI 252
F K+ F ++
Sbjct: 234 KSAFDKYILNIDLSGFNDV 252
Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Query: 250 YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVA 309
+II K + + I + E + +P + + + A + R + +
Sbjct: 377 PQIISKKNQFKRKEIL-LNKIEMAMHSKYALPFACIILFFVGAPLGA-IIRKGGLGLPMV 434
Query: 310 YGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I + + G L P + + I+ LSI +
Sbjct: 435 IAVIVFLTYHFIGLFAGNSAEGGSLSPFLGSWLSTIILFPLSIYL 479
>gi|332876989|ref|ZP_08444742.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332685097|gb|EGJ57941.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 491
Score = 91.8 bits (227), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/199 (15%), Positives = 60/199 (30%), Gaps = 3/199 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY +L L L +++ + +++ + +P +
Sbjct: 2 KILDRYILTQFLTNFLGALSILVLIFVFHTIFTYIDELAGR-GLELWIIGKFLIYFIPQL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I I+P ++ +I+ F E +A GIS+ +++ P +V LL I T + N
Sbjct: 61 IPIIMPLAVVISSIMTFGAFAENYEFAAMKASGISLMRVMLPLIVLMALLSIGTFFLANN 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + L + I AKK + +
Sbjct: 121 VIPVAYREVYTLRSNIAKVKPAMAISEGVFSNIGEDI--SIKVAKKSGDNDQFLHNVLIH 178
Query: 183 TIDKKNKIIHRKDADLAII 201
A +
Sbjct: 179 KKTPDRVNRTVIFAKKGEL 197
Score = 52.9 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ + + +AA + F R + + + Y I MK+
Sbjct: 372 HILNLSDKFALTVACFVLFFVAAPLGA-FIRKGGIGLPLVVAMIVFLAYYFIGMFMKNIA 430
Query: 330 KSGILLPVAAALIPVILTISLSILI 354
++ + P A IP ++ + + +
Sbjct: 431 ENNTINPALAPWIPALILLPFGVYL 455
>gi|189500558|ref|YP_001960028.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
gi|189495999|gb|ACE04547.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
Length = 441
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/199 (16%), Positives = 73/199 (36%), Gaps = 5/199 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL+RY K ++ L+ + + ++ + + ++ + A L + +V +
Sbjct: 2 KILYRYILKEHIGPFLFSFITILFILTLQFVTRFFDRFAGK-DLGFIVIAELISLQVAWM 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P LV ++ F NL +SE+ + RA G+S+++L+ P +V + LL N
Sbjct: 61 VVLALPMAVLVATLIAFGNLANSSEMTVMRAGGVSLYRLVFPVLVAAALLTGILERFNNI 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ L++ K + + ++ + + E T
Sbjct: 121 VLPEANYQAKVLLRDITR--AKPTFGLTENAFSGLVDGYSIL-VREEGSDPNTLEGITIY 177
Query: 183 TIDKKNKIIHRKDADLAII 201
A+ I
Sbjct: 178 ERGSNED-KAVITAESGHI 195
Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 9/104 (8%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+++ +S +N + +F+ + + L+ A + + ++ I +
Sbjct: 330 REIEHIEQSQGMYN-KYMVEFHKKYALSFACIVFVLVGAPLGV-LAKRGGFGIGAGLSLL 387
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + ++ + + G+L P + + + + + + +++
Sbjct: 388 FFILYWALLIMGEKLSDRGLLDPGISMWLANAVMLLIGFIAMIR 431
>gi|322514886|ref|ZP_08067903.1| inner membrane protein YjgP [Actinobacillus ureae ATCC 25976]
gi|322119140|gb|EFX91290.1| inner membrane protein YjgP [Actinobacillus ureae ATCC 25976]
Length = 367
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/359 (15%), Positives = 117/359 (32%), Gaps = 23/359 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ L L +++ F L + N L +P +
Sbjct: 2 ILSRYLTKEIFKSQLAILFILLLMFFSQQLITVLNSAVS-GKVPTDLVLSLLGLGMPALA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P V ++ SE+ + RA GI L SI V + +
Sbjct: 61 QFMLPLSLFVALLLTLGRFYTESEITVMRACGIGQSLLTQVAFFLSIFTTALAVYNVFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+++ + K N +M + + I E + D
Sbjct: 121 TPWAINKQSEMLAEAKSNPRFSALSAGQFMTAGG----YVLFIENINNEQNKLNDIYVFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
D++ K A+ + + + L+ Y+ D ++ +
Sbjct: 177 PDQQKKNRPSVVVAESGQLQGLPNGDQILTLENSTRYEGTENTADF---RISHFDNYQAY 233
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + ++ + S+ + +F + +PL M L+A +S
Sbjct: 234 LGYQDVDSNEKLVQRADFNKLMTDSSNEAKAELQWRFALIFAVPL----MALLAVPMSSV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP--VILTISLSILI 354
R + ++ + + + + + +KS G SG L L+P I L++++
Sbjct: 290 NPRQGRFAKVI-PAVLLYLIYFLLQSSLKSSGASGKLDATL--LMPLVSIAFFILAMVM 345
>gi|170725439|ref|YP_001759465.1| permease YjgP/YjgQ family protein [Shewanella woodyi ATCC 51908]
gi|169810786|gb|ACA85370.1| permease YjgP/YjgQ family protein [Shewanella woodyi ATCC 51908]
Length = 370
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/354 (13%), Positives = 130/354 (36%), Gaps = 36/354 (10%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + LK + L + + + + + S L +P +
Sbjct: 2 IVFRYLIREVLKAQIAVLFVLLAIFISQHFVRVLANASD-GEFPASLVMTLLGLNLPYLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + SE+VI ++G+S W + ++ +++ + T ++ +
Sbjct: 61 VLVLPLSFFLGILMAHGRMYAESEMVILHSVGVSEWYITRVTLLLAVINMLITGVLAVYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKI-------------L 170
E+ +++ + + ++P + ++I L
Sbjct: 121 TPWAEERQNQVLEHAQSEAGLAAITQGRF--QTSPNGRAVLFVERIGRDNELDKVFVAQL 178
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT--- 227
P+ + ++I + + K+I + +++L+ V+YQ +D
Sbjct: 179 PDPEAEQGQSNIVLAQGGKVIEDET------GGQRLQLRDGVQYQGTPKQVDFQVIEFGG 232
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ IK + + ++ E++K+ +K+ +F++ + IPL + +
Sbjct: 233 YQMQIKEQEVNERRRKLSALPIEELMKQEGPESKA----------EFHWRLAIPLSIPLL 282
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
TLIA ++ R + + I + ++ + + GI+
Sbjct: 283 TLIAVPMARVNVRQGKFAKM-FPAILLYLGYFGLMIAGRKALEDGIIPGYLGMW 335
>gi|219684936|ref|ZP_03539877.1| permease, YjgP/YjgQ family [Borrelia garinii PBr]
gi|219671674|gb|EED28730.1| permease, YjgP/YjgQ family [Borrelia garinii PBr]
Length = 355
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 56/356 (15%), Positives = 120/356 (33%), Gaps = 23/356 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+ + F K + T L L MIL+ + D + + + + N + +P
Sbjct: 3 IDKLFVKSIILTFLSMNLLFMILIILGDLFVNLLSYLEK--NIGFKDILYIYYLYLPKAF 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ L + NL+ +E++ + G+S+ ++L P ++ S+ + N +
Sbjct: 61 SDGVALSFLFAISNLIGNLSMRNEIIGLFSCGVSLTRILRPIILISLFISFVLFFFDNYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
LI+ N II K + + I
Sbjct: 121 VIDTVARRDLLIKNSIGNSGSSDKTIII-----RDLAREIYNIKSYDINENAFSKLMIII 175
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-----IPIKMDGFQ 238
D K++ R D D A ++K +L + E+ I +N+ + I ++ D +
Sbjct: 176 KDSKDEFQTRYDIDKAEWKDNKWRLYGIREFVKVGRKIKENAYDILDGTGIIKLEPDYIR 235
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ +F ++I +SF ++ + L+ + L+ S ++ F
Sbjct: 236 TVMLSSKALNFTKLINWISFLKSEHLN----YSDALFDLLNRVFFSFRLILL--SFTVGF 289
Query: 299 ----SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ N + + I + I I G L A+ + + +
Sbjct: 290 IALALKKNIFILSLLNSIAFAVVYVISIVIFNFLADLGYLHIYVASSFTTVFFLII 345
>gi|297250819|ref|ZP_06934296.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
gi|296837907|gb|EFH21845.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
Length = 181
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 62/156 (39%), Gaps = 2/156 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + +Y LL + L ++ +G+ +Y+ ++ ++P
Sbjct: 2 NLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGNLGK-GSYNGAKLGQYVLMQMPAH 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+++P L+ +V L SEL + +A G+S +LL ++ I T +
Sbjct: 61 AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGLIFAIATAALGEW 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP 158
IA + + ++ NG + W++
Sbjct: 121 IAPALSQKAENIKAAA-INGKISAGNTGLWLKEKTA 155
>gi|260062764|ref|YP_003195844.1| hypothetical protein RB2501_14279 [Robiginitalea biformata
HTCC2501]
gi|88784332|gb|EAR15502.1| hypothetical protein RB2501_14279 [Robiginitalea biformata
HTCC2501]
Length = 559
Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/202 (14%), Positives = 65/202 (32%), Gaps = 4/202 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K +L + M + + + + I +P +
Sbjct: 3 ILDQYILKRFLTNFFSSFVILMFIFIFQTIWLFIDDLAGK-GLDIIIIGKFLFYLMPNLT 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++++P L+ +I+ F E +A GIS+ + + P +V LLG T N +
Sbjct: 62 EKVLPLTVLLSSILTFGAFAENYEFAAMKASGISLQRSMLPLIVFVSLLGFVTFYFANTV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E+ +L + + S+ + +K + E+
Sbjct: 122 IPISEQKIYNLRRNIATLKPAAVITEGVF---SDFEGKNIKVDRKYGENDRFLENVVIHE 178
Query: 184 IDKKNKIIHRKDADLAIIYNDK 205
+ A + + +
Sbjct: 179 KSNLQRNTTVIKAATGELISGE 200
Score = 64.1 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
R + + L + + + A + R + + I Y ++
Sbjct: 440 RHILSLHNKFALALSCIILFFVGAPLGA-IIRKGGLGLPMVVAIVLFLAYYFFGVFSNNY 498
Query: 329 GKSGILLPVAAALIPVILTISLSILI 354
K G + PV A +P ++ + L + +
Sbjct: 499 AKEGNIPPVLGAWLPTMIMLPLGVWL 524
>gi|71083417|ref|YP_266136.1| permease YjgP/YjgQ family protein [Candidatus Pelagibacter ubique
HTCC1062]
gi|91762160|ref|ZP_01264125.1| Predicted permease YjgP/YjgQ family protein [Candidatus
Pelagibacter ubique HTCC1002]
gi|71062530|gb|AAZ21533.1| Predicted permease YjgP/YjgQ family protein [Candidatus
Pelagibacter ubique HTCC1062]
gi|91717962|gb|EAS84612.1| Predicted permease YjgP/YjgQ family protein [Candidatus
Pelagibacter ubique HTCC1002]
Length = 357
Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/295 (15%), Positives = 113/295 (38%), Gaps = 6/295 (2%)
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
P ++ +I+PFI L+ V F +L +EL + + G++ +++ + S +LGI V
Sbjct: 56 NTPSVLFEILPFIFLLGTQVFFIHLIDKNELQVFKYSGLNNIKIIKILGLYSFILGIIMV 115
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGD--KQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+ ++ + + + + + ++ W++ I A+++ E
Sbjct: 116 IFFYNGSSILKNSYLLIKNNYSGDNKYLAVITENGLWIKDEINDNINIINARQVNNE--F 173
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + +K ++ ++ I + K K+ + + G N L+ +
Sbjct: 174 LLNVSITKFNKDFDLVEVLQSERVDITSKKWKIFNPITLK-GNSQSTLNELILHSNFDLQ 232
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+S S ++I + S S + + ++ P+ L +T+ +A +
Sbjct: 233 KINSLFSNLSSLSIIDLIT-LRKSYMSLNYSVTDINSHLLKIVSYPVYLTLITIFSAIIM 291
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ GIF ++Y I + G + + + +P+I+ +
Sbjct: 292 FNIGYQKNTFYKITLGIFLSVIIYYINNFLSVLGTNEKIPVTLSIFLPLIILSII 346
>gi|292486865|ref|YP_003529735.1| inner membrane protein YjgP [Erwinia amylovora CFBP1430]
gi|292900738|ref|YP_003540107.1| permease [Erwinia amylovora ATCC 49946]
gi|291200586|emb|CBJ47717.1| putative permease [Erwinia amylovora ATCC 49946]
gi|291552282|emb|CBA19319.1| Inner membrane protein yjgP [Erwinia amylovora CFBP1430]
Length = 366
Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/351 (12%), Positives = 118/351 (33%), Gaps = 31/351 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLTLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ + + L + +
Sbjct: 61 QLILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKAAMILMLFTALLAALNVGWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS-- 181
+ +++Q K N + + + + + + + + +
Sbjct: 121 GPWSARYQNEVMQNAKANPGAAALAAGQF--QQSADGQSVLFIENV--KGNTFRNVFLAQ 176
Query: 182 ----------ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+ + ++ ++ R D + + + + + RI KN +
Sbjct: 177 LRPKGNARPSVVVAEQGRMEQRVDGSQIVTLDSGTRFEGTALLRDFRITDFKNYQAIIGH 236
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ SEQ + + + ++ ++ + + ++ M L+
Sbjct: 237 QAVTLDPNDSEQMSLDTLWH-------------SDKPDFRSELHWRLTLVFSVLIMALMV 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+S+ R + + + + + + + + ++S G G + P A
Sbjct: 284 VPLSVVNPRQGRV-LSMLPAMLLYLVFFLLQSSLRSSGGKGRIDPAVAMWA 333
>gi|313205632|ref|YP_004044809.1| permease yjgp/yjgq family protein [Riemerella anatipestifer DSM
15868]
gi|312444948|gb|ADQ81303.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer DSM
15868]
gi|315022637|gb|EFT35662.1| hypothetical protein RAYM_03529 [Riemerella anatipestifer RA-YM]
gi|325334940|gb|ADZ11214.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer RA-GD]
Length = 484
Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/205 (15%), Positives = 58/205 (28%), Gaps = 3/205 (1%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L RY K + L+ + V + Q G +L V
Sbjct: 1 MLKKLDRYIIKTFFGPFLFIFSVLFFIFLVNIIWIKLYQFTGKGLSPFEIGKLLFYMGV- 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ ++P L+ +I+ F EL +A GIS+++++ P + LL I +
Sbjct: 60 SVVNMVLPLTVLLSSIMTFGAFGERYELAAMKAAGISLFRIMRPLIFVVTLLSIILFIFS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N + + +++ + I K E
Sbjct: 120 NNVIPDFNRKAKNMLYNIAVTKPALNFTAGQF--IGAIPGASVKFDKISGENGENLEGII 177
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK 205
N A +
Sbjct: 178 IHKEVNGNNPQQTIIAPKGKFVPAQ 202
Score = 42.9 bits (100), Expect = 0.071, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 9/132 (6%)
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN----IFHNYRAETQF----YFLIVIPL 282
P K+D +K + + Y+ I + KSN ++ + ++ ++ +
Sbjct: 317 PFKIDTLKKEKKIEILYNAYQKINTLKEDKKSNKDPELYEMLKQRSKMIMYQQRILSFSI 376
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ LI +S+ R V I + Y + +++ G L P AA +
Sbjct: 377 TCIIFFLIGSSLG-SIIRKGGIGFPVVIAIVIFIIFYVLNLTVENLSWKGKLNPYLAAWL 435
Query: 343 PVILTISLSILI 354
P ++ L I
Sbjct: 436 PNLILAPLGIWF 447
>gi|297623245|ref|YP_003704679.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
gi|297164425|gb|ADI14136.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
Length = 374
Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/363 (13%), Positives = 116/363 (31%), Gaps = 36/363 (9%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L+ LL L + ++ + + A ++P I
Sbjct: 3 LDRYLLRECLPALLFSLLLYSGLAVT---SANFPRLQWIIGTPLWGMLGWLALQLPTAIV 59
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q +P L+ ++ F L +EL+ +A G+++ +L P + +L + + +
Sbjct: 60 QTLPIALLLAVLLTFGRLAAANELLAVQAGGVALRRLSAPMLALGLLAAGCALAMNQWVL 119
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L + G S + + S P + +
Sbjct: 120 PRANVRVGALWWELTSGG----SGLFRLERQSIPLGEFSLSFAATDRRTDDLFGVRLEAW 175
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKK----VVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + + A+ A ++L V++ R L +++
Sbjct: 176 --RGRQLSVVLAERARFVEGGLELYGYQNAVLDVGSLRDGAGTPEAQLQALVRLHNRAPS 233
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ---------------------FYFLIV 279
+ +F E + ++ F + R+ T+ F+ +
Sbjct: 234 PDAPLRITFAEDVDELITRFSGGGFEDTRSVTRTLRDANDPSLSAAERRAAAVLFHRKLA 293
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
P + + +A +++ +RS ++ + Y ++T+ + ++G+L
Sbjct: 294 EPFANLTLLAVALPLAVLHARSRSVAFGLSLAVTL--AWYLLLTLGQLLAQAGVLPVWLG 351
Query: 340 ALI 342
Sbjct: 352 LWF 354
>gi|227327171|ref|ZP_03831195.1| putative permease [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 371
Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/366 (11%), Positives = 121/366 (33%), Gaps = 37/366 (10%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ L L +++ F L I + + L VP ++
Sbjct: 2 IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVISLLGLGVPEMV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ LL +V ++ I + + +
Sbjct: 61 QLILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALVLAVFTAIVATINVMWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGD---------KQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
+ + +++ + K N + + + N + F
Sbjct: 121 SPWSSRHQEEVLAEAKANPGMATLVEGQFQSAQGGNAVLFVGNVKGSEFEHVFLAQLRPS 180
Query: 175 IWEDFTSITIDKKNKIIHRKDADL------AIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ + D+ I +D Y L+ + ++
Sbjct: 181 GNARPSVVVADR-GHIKQNEDGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQSV 239
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ +Q ++ + + A +F++ + + + ++ M
Sbjct: 240 TLN------NSDVQQMDMQTLWH-------------SDAHDARAEFHWRLTLIISVLIMA 280
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
++ +S+ R + + + + + + + + ++S G + P+ + +
Sbjct: 281 MMVVPLSVVNPRQGRV-LSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWVWLTNLTYF 339
Query: 349 SLSILI 354
+++++
Sbjct: 340 GIAVML 345
>gi|226227978|ref|YP_002762084.1| hypothetical protein GAU_2572 [Gemmatimonas aurantiaca T-27]
gi|226091169|dbj|BAH39614.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 578
Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/203 (13%), Positives = 70/203 (34%), Gaps = 9/203 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSI--SRGAVLAATRVP 60
+L RY + ++ ++ L L+ + + Q+ L + S +P
Sbjct: 2 KLLTRYVIREHIGPLVFALSALTSLLMLQ---YVARQLANLAGKGLPWSAIGQFFVLSLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P LV + F + E+ +A G+ + ++ P + ++LL +F V
Sbjct: 59 FTVAMTLPMAVLVATLYAFGRMAAEHEITAFKASGVRVRTMMLPVLFCALLLSLFMVWFN 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + L +D + + + ++ F+ + E + D
Sbjct: 119 DQVLPAANHR---LSMLQRDIARTKPTLALRDQALNAITDQFFMRVARTDAETNRMYDVV 175
Query: 181 SITIDKKNKIIHRKDADLAIIYN 203
+ + + AD +
Sbjct: 176 IYDLSR-GQERKTIYADSGVFAP 197
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ + + + L ++L F R + + I + Y + ++
Sbjct: 452 LAVEIHKKFALSFACLVFVLFGPPIALRFPR-GGVGVTIGVSIIVFGLYYVCLMGGEALA 510
Query: 330 KSGILLPVAAALIPVILTISLSILILLQKE 359
G L A I ++ +++++L + E
Sbjct: 511 DKGRLPAYVAMWIANVIFTLVALVMLWRVE 540
>gi|254507443|ref|ZP_05119578.1| putative permease, YjgP/YjgQ family [Vibrio parahaemolyticus 16]
gi|219549699|gb|EED26689.1| putative permease, YjgP/YjgQ family [Vibrio parahaemolyticus 16]
Length = 366
Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/355 (10%), Positives = 116/355 (32%), Gaps = 22/355 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L +++ ++ + + + +P +
Sbjct: 2 IIVRYLIRETLKSQLAIFFVLLLVFVSQTFIKVLGDATD-GDIPARLILAIVGLNIPQMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A G+ L+ + + + + +
Sbjct: 61 LLMLPMSLYIGILLTFGRLYSESEITVMNATGMGSKFLIRAAMSLAFITTVLAAFNTLYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A ++ LI+Q + P + +I +
Sbjct: 121 APWSQEKEAQLIEQVAAENSVDLLKAGQF--QRTPDGSSVVFIDEIRDN--KLNNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ I+ ++ + + + + Y+ +D T + G
Sbjct: 177 VRPRDAILPSVMFSNSGEVREHDDGRQMIVMHDGTRYEGIPTRLDYMVTEFEHYSGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV-AMTLIAASVSL 296
++ + S + + ++ S + + + I + + + +T++ +S
Sbjct: 237 REVQAKRRSWGAVPTLDLIESTDLSA-------KAELQWRISL-FVCIPLLTMLVVPLSA 288
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
R + + I + F+ + ++ KS + G + V P+ + ++
Sbjct: 289 VNPRQGRFAKM-GPAILAYFVYFISMSTTKSAIEDGNIPAVIGMW-PINFALLVA 341
>gi|50119363|ref|YP_048530.1| putative permease [Pectobacterium atrosepticum SCRI1043]
gi|49609889|emb|CAG73324.1| putative permease [Pectobacterium atrosepticum SCRI1043]
Length = 371
Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/365 (11%), Positives = 123/365 (33%), Gaps = 35/365 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ L L +++ F L I + + L VP ++
Sbjct: 2 IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVISLLGLGVPEMV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ LL ++ ++ + + + +
Sbjct: 61 QLILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALILAMFTAVIATINVMWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGD---------KQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
+ +++ + K N + + + N + F
Sbjct: 121 SPWSSMHQEEVLAEAKANPSMAALVEGQFQSAQGGNAVLFVGNVKGSEFQHVFLAQLRPS 180
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVK-----LKKVVEYQYGRIPIDKNSTTLN 229
+ + D+ + + A + + N L+ + T+
Sbjct: 181 GNARPSVVVADRGHITQNEDGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQTVT 240
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ +Q ++ + + A +F++ + + + ++ M L
Sbjct: 241 LN------NSDVQQMGMQALWS-------------SDAHDARAEFHWRLTLIVSVLIMAL 281
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+ +S+ R + + + + + + + + ++S G + P+ + ++
Sbjct: 282 MVVPLSVVNPRQGRV-LSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWIWLTNLMYFG 340
Query: 350 LSILI 354
+++++
Sbjct: 341 IAVML 345
>gi|219685681|ref|ZP_03540495.1| permease, YjgP/YjgQ family [Borrelia garinii Far04]
gi|219672797|gb|EED29822.1| permease, YjgP/YjgQ family [Borrelia garinii Far04]
Length = 355
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 56/352 (15%), Positives = 118/352 (33%), Gaps = 23/352 (6%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
F K + T L L MIL+ + D + + + + N + +P +
Sbjct: 7 FVKSIILTFLSMNLLFMILIILGDLFVNLLSYLEK--NIGFKDILYIYYLYLPKAFSDGV 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
L + NL+ +E++ + G+S+ ++L P ++ S+ + N +
Sbjct: 65 ALSFLFAISNLIGNLSMRNEIIGLFSCGVSLTRILRPIILISLFISFVLFFFDNYLVIDT 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
LI+ N II K + + I D K
Sbjct: 125 VARRDLLIKNSIGNSGSIDQTIII-----RDLAREIYNIKSYDINENAFSKLMIIIKDSK 179
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN-----IPIKMDGFQKFSE 242
++ R D D A ++K +L + E+ I +N+ + I ++ D +
Sbjct: 180 DEFQTRYDIDKAEWKDNKWRLYGIREFVKVGRKIKENAYDILDGTGIIKLEPDYIRTVML 239
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF---- 298
+ +F ++I +SF ++ + L+ + L+ S ++ F
Sbjct: 240 SSKALNFTKLINWISFLKSEHLN----YSDALFDLLNRVFFSFRLILL--SFTVGFIALA 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ N + + I + I I G L A+ + + +
Sbjct: 294 LKKNIFILSLLNSIAFAVVYVISIVIFNFLADLGYLHIYVASSFTTVFFLII 345
>gi|297521657|ref|ZP_06940043.1| Inner membrane protein yjgQ [Escherichia coli OP50]
Length = 173
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/181 (12%), Positives = 59/181 (32%), Gaps = 18/181 (9%)
Query: 114 IFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
+ T+ + +A GE++ + Q G + W + + F+ +++ +
Sbjct: 2 LLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK----DGNNFVYIERVKGDE 57
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLN-- 229
+ ++ ++ + A A + +L +V E S T++
Sbjct: 58 -ELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGT 116
Query: 230 -----IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
P K+ + + + +K + S + R + + I PL +
Sbjct: 117 WKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQ----DAGRYQLNMWSKIFQPLSV 172
Query: 285 V 285
Sbjct: 173 A 173
>gi|224531722|ref|ZP_03672354.1| permease, YjgP/YjgQ family [Borrelia valaisiana VS116]
gi|224511187|gb|EEF81593.1| permease, YjgP/YjgQ family [Borrelia valaisiana VS116]
Length = 329
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 49/319 (15%), Positives = 109/319 (34%), Gaps = 20/319 (6%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
+ + +P + L + NL+ +E++ + G+S+ ++L P
Sbjct: 16 DIGFKDILYIYYLYLPKAFSDGVALSFLFAISNLIGNLSMRNEIIGLFSCGVSLTRILRP 75
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
++ S+ + N + LI+ GD + D ++ +
Sbjct: 76 IILISVFISAALFFFDNYLVIDTVARRDILIKN--SIGDSRSIDKTIIIRDLARE---IY 130
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN 224
K + + + + I D K++ R D + A NDK KL + E+ I +N
Sbjct: 131 NIKSYDIDENTFSNLMIIIKDNKDEFQKRYDINKAEWKNDKWKLHDIREFVKVGKKIKEN 190
Query: 225 ST-----TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
+ T I ++ D + + +F ++I ++F + + L+
Sbjct: 191 AYDVLDGTGIIKLEPDYIRTVMLSSKALNFTKLINWINFLKTEQLN----YSDALFDLLN 246
Query: 280 IPLMLVAMTLIAASVSLEF----SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ L+ S ++ F + N + + I + I I G L
Sbjct: 247 RIFFSFRLILL--SFTVGFIALALKKNIFILSLLNSIAFAVVYVISIVIFNFLADLGYLH 304
Query: 336 PVAAALIPVILTISLSILI 354
A+ I + ++ +
Sbjct: 305 IYVASSFTTIFFLIINFFV 323
>gi|206602447|gb|EDZ38928.1| Putative permease, YjgP/YjgQ family [Leptospirillum sp. Group II
'5-way CG']
Length = 378
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 66/361 (18%), Positives = 123/361 (34%), Gaps = 17/361 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY F L + LL ++L+ I N + SI L P
Sbjct: 2 KIIHRYLFLELLPPFVIGLLVLVVLILTQQTLMIMNLLVNK-GLSIPTVLRLVMMIFPQF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ IIP L + F L E+ +A GI + +LL P V+ + L + +
Sbjct: 61 LTMIIPVSVLAASTATFNRLASDGEITALKASGIGLSRLLWPLVLFAFLGYVGSFY---- 116
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
++ E+ +Q+ K+K + Q+ N D F+ +P +
Sbjct: 117 MSLKAEETQGMSLQEMISTVLKKKMSLGIRPQVFNNFMDRFVIYVDRMPTFSRMQGVFIY 176
Query: 183 TIDKKNKIIHRKDADLAIIYND-------KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
K A + N+ +++L+ Q G ++ ++ I
Sbjct: 177 QEGKGKSPSTVIMAREGSLLNEENGRPGIRIQLRSGTLLQGGAAQQFVRFSSYDLTIFGK 236
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + E+ KK+ S+K ++ R Y P + +
Sbjct: 237 SAGATEKSPTIQ---ELEKKIGRSSKPDV-SLLRELEDRYKNYTYPFSCLIFAFLGIPFG 292
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ RS + V F Y + T+ +L P A+LIP + ++ +L
Sbjct: 293 IYAKRSGKLAGFVFATASVIF-FYILNTVDDLMVARRLLKPFVASLIPDLALGAVMGFLL 351
Query: 356 L 356
+
Sbjct: 352 I 352
>gi|315223351|ref|ZP_07865210.1| YjgP/YjgQ family permease [Capnocytophaga ochracea F0287]
gi|314946682|gb|EFS98671.1| YjgP/YjgQ family permease [Capnocytophaga ochracea F0287]
Length = 495
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/199 (15%), Positives = 64/199 (32%), Gaps = 3/199 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY +L L L +++ + +++ + +P +
Sbjct: 2 KILDRYIITQFLTNFLGALSILVLIFVFHTIFTYIDELAGR-GLELWIIFKFLIYFIPQL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I I+P ++ +I+ F E +A GIS+ +++ P ++ LL + T + N
Sbjct: 61 IPIIMPLAVVIASIMTFGAFAENYEFAAMKASGISLMRVMRPLIILMALLSLGTFFLANN 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + L + I I +G K+ + E+
Sbjct: 121 VIPVAYREVYTLRSNIAKVKPAMAIAEGVFSNIG-EDISIKVGKKRGDNDEF-LENVLIH 178
Query: 183 TIDKKNKIIHRKDADLAII 201
+A +
Sbjct: 179 KKTPDKVNRTVINAKRGEL 197
Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ + + +AA + F R + + + Y I MK+
Sbjct: 374 HILNLSDKFALTVACFVLFFVAAPLGA-FIRKGGIGMPLVIAMILFLAYYFIGMFMKNIA 432
Query: 330 KSGILLPVAAALIPVILTISLSILI 354
++ + P A IP ++ + L I +
Sbjct: 433 ENNTINPALAPWIPALILLPLGIYL 457
>gi|259907066|ref|YP_002647422.1| Putative permease [Erwinia pyrifoliae Ep1/96]
gi|224962688|emb|CAX54143.1| Putative permease [Erwinia pyrifoliae Ep1/96]
gi|283476866|emb|CAY72714.1| Inner membrane protein yjgP [Erwinia pyrifoliae DSM 12163]
Length = 366
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/351 (12%), Positives = 117/351 (33%), Gaps = 31/351 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLTLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ + + + + +
Sbjct: 61 QLILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKAAMILMLFTALLAAVNVGWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS-- 181
+ +++Q K N + + + + + + + + +
Sbjct: 121 GPWSSRYQNEVMQNAKANPGAAALAAGQF--QQSGDGQSVLFIENV--KGNTFSNVFLAQ 176
Query: 182 ----------ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+ + ++ + R D + + + + + RI KN +
Sbjct: 177 LRPKGNARPSVVVAQQGHMEQRVDGSQIVTLDSGTRFEGTALLRDFRITDFKNYQAIIGH 236
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ SEQ + + + ++ ++ + + ++ M L+
Sbjct: 237 QAVTLDPNDSEQMSLDTLWH-------------SDKPDFRSELHWRLTLVFSVLIMALMV 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+S+ R + + + + + + + + M+S G G + P A
Sbjct: 284 VPLSVVNPRQGRV-LSMLPAMLLYLVFFLLQSSMRSSGSKGRIDPAIAMWA 333
>gi|168704909|ref|ZP_02737186.1| hypothetical protein GobsU_35554 [Gemmata obscuriglobus UQM 2246]
Length = 366
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 60/365 (16%), Positives = 108/365 (29%), Gaps = 35/365 (9%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPN---YSISRGAVLAATRVPL 61
+ R F + ++ + L+ + L VIDL + P S RVP
Sbjct: 4 IDRMFLWTFFRSYIIVLISLVGLFIVIDLFTHLDAFVNKPGGFVASARHITYYYGNRVPE 63
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGS---ILLGIFTVL 118
F+TL+ + R +EL+ + G+ + + P +G+ + LG
Sbjct: 64 YFDLFGNFVTLIAGAFTVAWMQRNNELLPLLSAGVPTRRAIRPVFLGAAVTLALGPLNQE 123
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ P D Q K D ++ + +
Sbjct: 124 FLIPEVADALTSQRDDPDQAKAQSLMGAYDSSGIHFEGLAG----------FRKDKLVKK 173
Query: 179 FTSITIDKKNKIIHRKDADLAIIYN--------DKVKLKKVVEYQY-GRIPIDKNSTTLN 229
+ + A A+ L + G IP+ N T L
Sbjct: 174 MCVTFPEHSRSGMVHLTAQEAVFRPKQGDDPLTGGWLLTDATPDTFTGEIPL--NLTVLG 231
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNY-----RAETQFYFLIVIPLML 284
Q R I + ++ + + F+ + PL+
Sbjct: 232 TGRFFVKVQDADYDAVCRGGAWYIYAATSDLQTMLVDPEPRRRGKLAVLFHTRVTRPLVG 291
Query: 285 VAMTLIAASVSLE-FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M + +V L +R + + + L+ I K G +L P AA +P
Sbjct: 292 MVMVVFGLAVILGNPNRHVIISSGLCLIVSAATFLFVI--ACKYLGDQDVLPPPLAAWLP 349
Query: 344 VILTI 348
VIL
Sbjct: 350 VILFG 354
>gi|78356991|ref|YP_388440.1| permease [Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
gi|78219396|gb|ABB38745.1| permease, putative [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 397
Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 52/338 (15%), Positives = 125/338 (36%), Gaps = 20/338 (5%)
Query: 36 IQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIG 95
++ + + A L PL + IIP ++ + F ++ ELV +A G
Sbjct: 43 QLRELFLGLDLNALDMATLFVYLSPLFLTLIIPIACMLSVFLAFLRMSTDRELVALKAGG 102
Query: 96 ISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQI 155
+S++QLL ++ +L G+ + + G I + + K
Sbjct: 103 LSLFQLLPAPLLFCLLCGLLNLYISLSGVAWGMGNFRHTIMEIANTRAKIVLQPGV-FNQ 161
Query: 156 SNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDK------VKLK 209
+ P +F A+ + + + + +++ A + +D+ L
Sbjct: 162 TVPGLTVF--ARTVDNSSGKLGHV-LVEDNSRDETSILILAPRGQLRSDEQRGELVFILH 218
Query: 210 KVVEYQYGRIPI---DKNSTTLNIPIKMDGFQKFSEQFASRSF-YEIIKKMSFSNKSNIF 265
Y+ + D N T+ + + + + + ++ + +
Sbjct: 219 NGKIYRQQEDSVSVLDFNDYTVRLDLGQIFKGVSLGKVKPKELSWSELRSIGPDHPEARR 278
Query: 266 HNYRAE---TQFYFLIVIPLMLVAMTLIAASVSLEFSRS-NQPRIIVAYGIFSGFMLYTI 321
+ + V+P+ + + L A ++ F Q I++A G+F + YT+
Sbjct: 279 DSNFLRKVHVELQKRWVLPMACLVLGLFAMPLACAFQGLDKQFGILLALGMFL--IYYTM 336
Query: 322 ITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+++ S G+SG + P +P ++ +++ + L + E
Sbjct: 337 LSVGLSTGESGTVPPAVGLWMPNLIFLAVGLFWLDRAE 374
>gi|312170934|emb|CBX79193.1| Inner membrane protein yjgP [Erwinia amylovora ATCC BAA-2158]
Length = 366
Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats.
Identities = 46/351 (13%), Positives = 121/351 (34%), Gaps = 31/351 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLTLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ + + L + +
Sbjct: 61 QLILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKAAMILMLFTALLAALNVGWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS-- 181
+ +++Q K N + + + + + + + + +
Sbjct: 121 GPWSARYQNEVMQNAKANPGAAALAAGQF--QQSADGQSVLFIENV--KGNTFRNVFLAQ 176
Query: 182 ----------ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+ + ++ ++ R D + + + + + RI KN +
Sbjct: 177 LRPKGNARPSVVVAEQGRMEQRVDGSQIVTLDSGTRFEGTALLRDFRITDFKNYQAIIGH 236
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ SEQ + + + + ++R+E + + + ++ M L+
Sbjct: 237 QAVTLDPNDSEQMSLDTLWH-----------SGKPDFRSELHW--RLTLVFSVLIMALMV 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+S+ R + + + + + + + + ++S G G + P A
Sbjct: 284 VPLSVVNPRQGRV-LSMLPAMLLYLVFFLLQSSLRSSGGKGRIDPAVAMWA 333
>gi|300725026|ref|YP_003714352.1| putative transmembrane protein, transport [Xenorhabdus nematophila
ATCC 19061]
gi|297631569|emb|CBJ92278.1| putative transmembrane protein, transport [Xenorhabdus nematophila
ATCC 19061]
Length = 366
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 55/363 (15%), Positives = 126/363 (34%), Gaps = 31/363 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L E+ E N + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVEVLGAAVE-GNIPANLVISLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ L+ ++ ++L I +
Sbjct: 61 QLILPLSLFLGVLMTFSKLYTESEITVMHACGLGKSVLVKSALILALLTSILAAANVIWF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQ---------KSDIIPWMQISNPQQDIFIGAKKILPENH 174
K ++ K N D + I N + + F +
Sbjct: 121 IPESSKYQAQVLADAKTNPSLAAIMEGQFKPSRDGNMVLYIGNVKGNTFENVFLAQLRST 180
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ + I + R + N L + Y+ + D T +
Sbjct: 181 NDQRPSVI-FADGGHMEERPN------GNQVAVLHQGTRYEGTALLRDFRITEFTNYQAV 233
Query: 235 DGFQKFS---EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
G Q+ + +S ++ +++ +F++ + + L ++ M L+
Sbjct: 234 IGHQRADIDNNKVEQKSLEQLWHATDDDSRA----------EFHWRLTLILSVLIMALMV 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+S R + + + + + + + + ++S G G L P+ + ++L+
Sbjct: 284 VPLSAVNPRQGRI-LSMLPAMLLYLIFFMLQSSLRSNGSKGKLDPMFWMWLVNGSYLALA 342
Query: 352 ILI 354
+ +
Sbjct: 343 VAL 345
>gi|310766279|gb|ADP11229.1| Putative permease [Erwinia sp. Ejp617]
Length = 366
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 43/351 (12%), Positives = 116/351 (33%), Gaps = 31/351 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLTLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ + + + + +
Sbjct: 61 QLILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKAAMILMLFTALLAAVNVGWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS-- 181
+ +++Q K N + + + + + + + +
Sbjct: 121 GPWSSRYQNEVMQNAKANPGAAALAAGQF--QQSGDGQSVLFIENV--KGSTFSNVFLAQ 176
Query: 182 ----------ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+ + ++ + R D + + + + + RI KN +
Sbjct: 177 LRPKGNARPSVVVAQQGHMEQRVDGSQIVTLDSGTRFEGTALLRDFRITDFKNYQAIIGH 236
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ SEQ + + + ++ ++ + + ++ M L+
Sbjct: 237 QAVTLDPNDSEQMSLDTLWH-------------SDKPDFRSELHWRLTLVFSVLIMALMV 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+S+ R + + + + + + + + ++S G G + P A
Sbjct: 284 VPLSVVNPRQGRV-LSMLPAMLLYLVFFLLQSSLRSSGSKGRIDPAIAMWA 333
>gi|146292282|ref|YP_001182706.1| permease YjgP/YjgQ family protein [Shewanella putrefaciens CN-32]
gi|145563972|gb|ABP74907.1| permease YjgP/YjgQ family protein [Shewanella putrefaciens CN-32]
gi|319425582|gb|ADV53656.1| inner membrane component of lipopolysaccharide transporter, LptF
[Shewanella putrefaciens 200]
Length = 370
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 49/368 (13%), Positives = 132/368 (35%), Gaps = 36/368 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + K + LL + + I + + S L +P ++
Sbjct: 2 IVFRYLIREVFKAQIAVLLVLLTIFISQHFVRILADASD-GEFPASLIVTLIGLNIPALV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + +V + +E+VI +G+S W + ++ +++ +FT + +
Sbjct: 61 VLVLPLSLFLGILVAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVVNMLFTGYLSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKI-------------L 170
E+ ++++ + + ++P + ++I L
Sbjct: 121 TPWAEEQQNQVLEKAQSEAGLAALVQGRF--QASPNGRAVLFVERIGKDNELEKVFVAQL 178
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT--- 227
P+ T++ + K +++ + +++L V YQ D
Sbjct: 179 PDPSDETGVTNVVVAKNGRVLE------DNMGAQQLQLNNGVRYQGSPRLKDYQMIEFGG 232
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ IK + + ++ + +++K + A +F++ + IPL + M
Sbjct: 233 YKMQIKEQQVDERRRKLSALTVTDLLK----------VESAEAVAEFHWRLAIPLAIPIM 282
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
TLIA ++ R + + + + ++ + + G++ +
Sbjct: 283 TLIAVPLARVNVRQGKFAKM-LPAVLLYLGYFGLMVAGRKALQDGVIPQYLGMWWIHLSA 341
Query: 348 ISLSILIL 355
+ + I +L
Sbjct: 342 LIMGIFLL 349
>gi|124514758|gb|EAY56270.1| putative permease, YjgP/YjgQ family [Leptospirillum rubarum]
Length = 378
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 65/361 (18%), Positives = 122/361 (33%), Gaps = 17/361 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY F L + LL ++L+ I N + SI L P
Sbjct: 2 KIIHRYLFVELLPPFVIGLLVLVVLILTQQTLMIMNLLVNK-GLSIPTVLRLVMMIFPQF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ IIP L + F L E+ +A GI + +LL P V+ + L + +
Sbjct: 61 LTMIIPVSVLAASTATFNRLASDGEITALKASGIGLSRLLWPLVLFAFLGYVGSFY---- 116
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
++ E+ +Q+ K+K + Q+ N D F+ +P +
Sbjct: 117 MSLKAEETQGMSLQEMISTVLKKKMSLGIRPQVFNNFMDRFVIYVDRMPTFSRMQGVFIY 176
Query: 183 TIDKKNKIIHRKDADLAIIYND-------KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
K A + N+ +++L+ Q G ++ ++ I
Sbjct: 177 QEGKGKSPSTVIMAREGSLLNEENGRPGIRIQLRSGTLLQGGAAQQFVRFSSYDLTI--- 233
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + E+ K++ S K ++ R Y P + +
Sbjct: 234 FGKSAGTTAKPPTIRELENKIAGSPKPDV-SLLRELEDRYKNYTYPFSCLIFAFLGIPFG 292
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ RS + V F Y + T+ +L P A+LIP + ++ +L
Sbjct: 293 IYAKRSGKLAGFVFATASVIF-FYILNTVDDLLVARRLLKPFVASLIPDLALGTVMGFLL 351
Query: 356 L 356
+
Sbjct: 352 I 352
>gi|77457217|ref|YP_346722.1| permease YjgP/YjgQ [Pseudomonas fluorescens Pf0-1]
gi|77381220|gb|ABA72733.1| putative ABC transport system, membrane protein [Pseudomonas
fluorescens Pf0-1]
Length = 373
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 45/361 (12%), Positives = 118/361 (32%), Gaps = 20/361 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVIIMSGRFIKYLAQAAA-GQLDPGSLFLIMGYRLPGFM 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +L + + L+ + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLFRMTLFPATLVAVVVAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS-- 181
A G L+ + + + + + + + +
Sbjct: 121 APQGANQFQLLLNKQDALTEFDTLEPGRF--QALRDGTRVTYTETLSDDRVNLGSVFISQ 178
Query: 182 --ITIDKKNKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ ++K++ I A+ N + L Y + + +
Sbjct: 179 KNLGANQKDRGISVLVAEKGRQEVRPDGNRYLILDNGYRYDGSPGQANYRAIHYETYGVL 238
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
SE+ R + + R++T+ + + +PL++ +TL+A +
Sbjct: 239 LPKPDVSEEVTDRDAMPTSSLL-------GSDDIRSKTELQWRLSLPLLVFIVTLMAVPL 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S + + + I TI+ + + G + P + +++ + +
Sbjct: 292 S-RVNPRQGRFLKLLPAILLYMAYLTILIAARGALEKGKIPPALGLWWVHAIFLTIGLGL 350
Query: 355 L 355
L
Sbjct: 351 L 351
>gi|256820290|ref|YP_003141569.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea DSM
7271]
gi|256581873|gb|ACU93008.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea DSM
7271]
Length = 495
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 30/199 (15%), Positives = 64/199 (32%), Gaps = 3/199 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY +L L L +++ + +++ + +P +
Sbjct: 2 KILDRYIITQFLTNFLGALSILVLIFVFHTIFTYIDELAGR-GLELWIIFKFLIYFIPQL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I I+P ++ +I+ F E +A GIS+ +++ P ++ LL + T + N
Sbjct: 61 IPIIMPLAVVIASIMTFGAFAENYEFAAMKASGISLMRVMRPLIILMALLSLGTFFLANN 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + L + I I +G K+ + E+
Sbjct: 121 VIPVAYREVYTLRSNIAKVKPAMAIAEGVFSNIG-EDISIKVGKKRGDNDEF-LENVLIH 178
Query: 183 TIDKKNKIIHRKDADLAII 201
+A +
Sbjct: 179 KKTPDKVNRTVINAKRGEL 197
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ + + +AA + F R + + + Y I MK+
Sbjct: 374 HILNLSDKFALTVACFVLFFVAAPLGA-FIRKGGIGMPLVIAMILFLAYYFIGMFMKNIA 432
Query: 330 KSGILLPVAAALIPVILTISLSILI 354
++ + P A IP ++ + L I +
Sbjct: 433 ENNTINPALAPWIPALILLPLGIYL 457
>gi|237807325|ref|YP_002891765.1| permease YjgP/YjgQ family protein [Tolumonas auensis DSM 9187]
gi|237499586|gb|ACQ92179.1| permease YjgP/YjgQ family protein [Tolumonas auensis DSM 9187]
Length = 367
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 44/310 (14%), Positives = 106/310 (34%), Gaps = 15/310 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY FK LKT L LL +++ I + + + S + +P +
Sbjct: 2 IVFRYIFKETLKTQLSILLILLLIFTSQQFIRILARAAD-GSIPSSLIGQMMLLNIPYMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + + L SE+ + RAIG+ ++ +V ++L + + +
Sbjct: 61 LLLLPISLFIAILFAHGRLYADSEMTVLRAIGVGPSYIMRISLVLALLTTVVATVNTMWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L+ K + + ++ + + + + + +
Sbjct: 121 APMAREKQSQLLDAAKADPLSIPLESGRFLSL--DGGHLTAYVEDVQDSGRSLQRIFLLQ 178
Query: 184 IDKKNKIIHRKDADLAIIYNDK----VK-LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
A + ND L Y P + N Q
Sbjct: 179 RSPDPAEAAIIVAASGHLTNDAQGTPWVTLANGKRY--AGTPPSTQFSIANFAEYKAQLQ 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + ++ + +++ + + ++ + +V+PL + MTLIA +++
Sbjct: 237 RKDIEPSTPKARALPSSALYNS-----TDKKQIAEWQWRVVLPLSIPLMTLIAVPLAVVN 291
Query: 299 SRSNQPRIIV 308
R + ++
Sbjct: 292 PRQGRYAKLL 301
>gi|116327644|ref|YP_797364.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
gi|116120388|gb|ABJ78431.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
Length = 606
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 65/465 (13%), Positives = 134/465 (28%), Gaps = 110/465 (23%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY L L L ++ V+ L ++ R +
Sbjct: 104 IPILNRYILGEILSPFLVALAFFTMVYMVLALQKMIGLFVGK-GVDPLRLLDYFGYLLAN 162
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP L+ I+ L+ SE+ R+ G+S ++ F+ ++ + V +N
Sbjct: 163 TLPMTIPMACLMSGIMAAGRLSGDSEITAIRSAGVSFPRIYINFLAFGFVMALV-VAYLN 221
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF------IGAKKILPENHI 175
+ ++ +W + + I P + QD+F + + +
Sbjct: 222 FYLSPENTRKMNEFNKWVLAYNPLLA-ITPGQFSGDKTQDLFEKRARTMYTDGMNSDTGQ 280
Query: 176 WEDFTS----ITIDKKN--------------KIIHRKDADLAIIYN-------------- 203
+ I ++ +II +A +
Sbjct: 281 LKGVQIREWEIFLEGNEYFNLGGKMIPMGGSRIIQIINAGKGNLVEKIGPDGEYEKSIRL 340
Query: 204 -DKVKLK--------KVVEYQYGR----IPIDKNSTTLNIPIKMDGFQ-----KFSEQFA 245
D L+ V +++ G IP K TL + +K + F +
Sbjct: 341 KDGWILEWSDDRKSFSVTDFRNGEMDYNIPKGKEKKTLELNVKPETFSMPVLFQIRNNIE 400
Query: 246 SRSFYEIIK------------------------KMSFS-NKSNIFHNYRAETQFYFLI-- 278
S +I K+ + +N TQ Y ++
Sbjct: 401 SEGLEKIPGLETLKEMGVEIKGLIGLKQMVEQMKIDLAMGAANGILTPDQMTQNYSVLTQ 460
Query: 279 -----------------------VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG 315
+P+ + I+ + L RS + + +
Sbjct: 461 LMALMQQGKKVLTDFNVEIHRRIAMPISCLIFFFISFPLGLVVKRSGK-GMSFTLAVVFL 519
Query: 316 FMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ +T T+ + + + IL LSI I++++ D
Sbjct: 520 MIYFTFFTLGSTISYNDKVPDWIGPWSANILIALLSINIMIKRTD 564
>gi|111115643|ref|YP_710261.1| hypothetical protein BAPKO_0861 [Borrelia afzelii PKo]
gi|110890917|gb|ABH02085.1| hypothetical protein BAPKO_0861 [Borrelia afzelii PKo]
Length = 355
Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 62/352 (17%), Positives = 124/352 (35%), Gaps = 23/352 (6%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
F K + T L L MIL+ + DL E N S+ + +P +
Sbjct: 7 FVKSIILTFLSMNLIFMILIILGDLFVNLLNFLEK-NISLKDIFYIYYLYLPKAFSDGVA 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L + NL+ +E++ + G+ + ++L P ++ S+ + + N +
Sbjct: 66 LSFLFAISNLIGNLSMRNEIIGLFSCGVPLTRILRPIILISVFISVVLFFFDNYLVIDTV 125
Query: 129 KIGIDLIQ-QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
LI+ +NG K+ II K + + + + I D K
Sbjct: 126 AKRDLLIKNSIGNNGSIDKTIII------RDLAREIYNIKSYDIDENAFSNLMIIIKDSK 179
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST-----TLNIPIKMDGFQKFSE 242
++ R D + A ++K KL + E+ I +N+ T I ++ D +
Sbjct: 180 DEFQTRYDINKAEWKDNKWKLYGIREFVKVGRKIKENAYDVLDGTGIIKLEPDYIRTVML 239
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF---- 298
+ +F ++I +SF ++ + L+ + L+ S ++ F
Sbjct: 240 SSKALNFTKLINWISFLKSEHLN----YSDALFDLLNRIFFSFRLMLL--SFTVGFIALA 293
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ N + + I + I I G L A+ I + +
Sbjct: 294 LKKNIFILSLLNSIAFAVVYVISIVIFSFLADLGYLNIYVASSFTTIFFLII 345
>gi|163750106|ref|ZP_02157349.1| hypothetical protein KT99_20601 [Shewanella benthica KT99]
gi|161330163|gb|EDQ01145.1| hypothetical protein KT99_20601 [Shewanella benthica KT99]
Length = 364
Score = 90.3 bits (223), Expect = 5e-16, Method: Composition-based stats.
Identities = 47/357 (13%), Positives = 126/357 (35%), Gaps = 24/357 (6%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ K + L + + + + + S L +P + +IP
Sbjct: 1 MIREVFKAQIAVLAVLLAIFISQHFVRVLADASD-GEFPASLVMTLLGLNLPYLAVLVIP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ ++ + SE+VI +G+S W + ++ ++ IFT ++ + E
Sbjct: 60 LSLFLGILMAHGRMYADSEMVILHGVGVSEWYITRVTLLLAVGNMIFTGILSVYVTPWAE 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ +++ + + ++P + ++I N +++ F + D +
Sbjct: 120 EKQNQVLEHAQSEAGLAAITQGRF--QTSPNGRAVLFVERIGRNNELYKVFVAQLPDPDD 177
Query: 189 K--IIHRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDGFQ 238
+ I + A + +++L V+YQ +D + + IK
Sbjct: 178 ESGISNIVVAQGGKVIEDETGGQRLQLSDGVQYQATPKKVDFQIIEFGSYQMQIKEQPVD 237
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + ++ E++ + + +F++ + IPL + MTLIA ++
Sbjct: 238 ERRRKLSAMPINELMDIEGPAATA----------EFHWRLAIPLAIPLMTLIAVPMARVN 287
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + + ++ + + G++ + + IL+L
Sbjct: 288 VRQGKFAKM-FPAVLLYLGYFCLMIAGRKALEDGVIPEYLGMWWIHASALCMGILLL 343
>gi|114562103|ref|YP_749616.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
400]
gi|114333396|gb|ABI70778.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
400]
Length = 370
Score = 90.3 bits (223), Expect = 5e-16, Method: Composition-based stats.
Identities = 44/348 (12%), Positives = 122/348 (35%), Gaps = 24/348 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY LK LL + + + + + S L +P +
Sbjct: 2 IVFRYLISEVLKAQFAVLLVLLTIFISQQFVRVLADASD-GEFPASLVMTLLGLNLPQLT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+V+ +G+S W + ++ + +FT + +
Sbjct: 61 VLVLPLSFFLAILLAHGRMYAENEMVVLHGVGVSEWYVTRVTLLLAFANLLFTAYLSVYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E+ ++++ + + ++P + +KI +N + + F +
Sbjct: 121 GPWAEERQNQVLEKAQSEAGLAALTQGRF--QASPNGRAVLFVEKINKDNTLDKVFVAQL 178
Query: 184 IDK--KNKIIHRKDADLAI-----IYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIK 233
D +N + + A+ I + +++L+K YQ ++ + IK
Sbjct: 179 PDPEDENGLTNIVVANKGRVIEDNIGSQQLQLEKGFRYQGSPKSLELQVIEFGGYKMEIK 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + ++ E++ + +F + + IP+ + +TLIA
Sbjct: 239 EQEVDERRRKLSAMPIDELLDTPGPEAAA----------EFQWRLAIPIAIPLLTLIAVP 288
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
++ R + + I + ++ + + ++
Sbjct: 289 LARVNVRQGKFAKM-GPAILLYLGYFGLMIAGRKALQDEVVPQYLGMW 335
>gi|226357375|ref|YP_002787115.1| membrane protein; permease [Deinococcus deserti VCD115]
gi|226319365|gb|ACO47361.1| putative membrane protein; putative permease [Deinococcus deserti
VCD115]
Length = 347
Score = 90.3 bits (223), Expect = 5e-16, Method: Composition-based stats.
Identities = 51/356 (14%), Positives = 114/356 (32%), Gaps = 16/356 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP IL R+ + L+ + L L+ ++ A A +P
Sbjct: 1 MPSILTRFVLREVLRWYAAGAALFLTLQMTDVLSTTVAKLLTYDPPLWKAVAAFGAI-LP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ + + ++ F + R SE A G+ L+ P + ++G+
Sbjct: 60 TILNRTLVLAVPFAILLAFSRMQRDSEFKAILAAGVRPLSLVWPLLAPFAVVGLIAGYNA 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +G K + + + P ++ ++ + + + T
Sbjct: 120 GTLVPAGLKQWDRAWYRIYEQTPPPPTQE---HYTFAPAGALYYASRIVNAKGGDRAELT 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + + + + A + L+ + G+ P K L +P + D Q
Sbjct: 177 GVMVQRGEETLT---ATSGVWDAKARTWTLQNAWVVRPGQPPRQKTGA-LVLP-QRDTLQ 231
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S ++ + +Y+ Q + P+ V L A
Sbjct: 232 PPPAEGKQLSNAQLRAGLKRELSPAQRRDYQY--QLATRVADPVTPVVFALA-AGALGLL 288
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS + F Y + + ++G + P AA +P + + L+ ++
Sbjct: 289 IRSRATAFAAVLVFIASF--YILWSTAPQLARAGAMDPALAAWLPNLTFLLLAGVL 342
>gi|297565137|ref|YP_003684109.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
gi|296849586|gb|ADH62601.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
Length = 337
Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 58/351 (16%), Positives = 110/351 (31%), Gaps = 24/351 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L +L + + DL + + N +S L R+P +
Sbjct: 2 LQRYLLRETLGLYTVGIL-IFVGLLTTDLLSSLSGVLLRQNTPLSDVLQLVVYRLPYTLG 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + +V R SEL + A GI LL P ++ +++ + +
Sbjct: 61 IALPLGLVFSLLVTLSRWIRQSELKAAYAGGIPPRSLLWPALLLGVVVSGVALWNEGWVK 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE--NHIWEDFTSI 182
+ + Q++ Q S ++ ++ P+ A++I P+ E I
Sbjct: 121 PEAQARFDAV--QYRIYYGSQLSGVLS-DKVYAPEGLGVYYAQRIYPDREGARLEGVRVI 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ I AD +L+ + L P + S
Sbjct: 178 --EPGGAIWS---ADRGRWLEKSWQLQNAYRVDPDGKVTQVSLQPLPFPARFVPQSSSSG 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
R ++ + + S F R L + + +A V L S
Sbjct: 233 ALTLR-LPDL-HAAARVDPSVRFTLARTY-------ANALGALVLAWLAIVVGLSLRESA 283
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
I + + F Y + T F K + A +P ++ L+
Sbjct: 284 WAFISI---VGLIFGYYVLWTASAQFAKFNVWGA-YGAWLPNLVYGLLAAW 330
>gi|213963082|ref|ZP_03391340.1| permease YjgP/YjgQ family protein [Capnocytophaga sputigena Capno]
gi|213954166|gb|EEB65490.1| permease YjgP/YjgQ family protein [Capnocytophaga sputigena Capno]
Length = 508
Score = 89.9 bits (222), Expect = 6e-16, Method: Composition-based stats.
Identities = 34/200 (17%), Positives = 73/200 (36%), Gaps = 5/200 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY +LK L L +++ + +++ + +P +
Sbjct: 2 KIIDRYIITQFLKNFLGALSILILIFVFHTIFTYIDELAGR-GLELWIIFKFLIYFIPQL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I I+P ++ +I+ F + + E +A GIS+ +++ P ++ LL I T + N
Sbjct: 61 IPIIMPLAVVIASIMTFGSFAESYEFAAMKASGISLMRVMRPLIILMALLSIGTFFLANN 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + L + SN +DI I K +N + + I
Sbjct: 121 VIPVAYREVYTLRSNIAKVKPAMAIAEGVF---SNIGEDISIKVGKKSGDNDQFLESVLI 177
Query: 183 TIDKKNKI-IHRKDADLAII 201
+++ +A +
Sbjct: 178 HKKTPDRVNRTVINAKRGEL 197
Score = 53.3 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ + + +AA + R + + + + Y I MK+
Sbjct: 376 HIMNLSDKFALTIACFVLFFVAAPLGA-LIRKGGIGLPLVFAMILFLSYYFIGMFMKNIA 434
Query: 330 KSGILLPVAAALIPVILTISLSILI 354
++ + P A IP ++ + L I +
Sbjct: 435 ENNTINPALAPWIPALILMPLGIYL 459
>gi|120599782|ref|YP_964356.1| permease YjgP/YjgQ family protein [Shewanella sp. W3-18-1]
gi|120559875|gb|ABM25802.1| permease YjgP/YjgQ family protein [Shewanella sp. W3-18-1]
Length = 370
Score = 89.9 bits (222), Expect = 6e-16, Method: Composition-based stats.
Identities = 50/368 (13%), Positives = 132/368 (35%), Gaps = 36/368 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + K + LL + + I + + S L +P ++
Sbjct: 2 IVFRYLIREVFKAQIAVLLVLLTIFISQHFVRILADASD-GEFPASLIVTLIGLNIPALV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + +V + +E+VI +G+S W + ++ +++ +FT + +
Sbjct: 61 VLVLPLSLFLGILVAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVVNMLFTGYLSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKI-------------L 170
E+ ++++ + + ++P + ++I L
Sbjct: 121 TPWAEEQQNQVLEKAQSEAGLAALVQGRF--QASPNGRAVLFVERIGKDNELEKVFVAQL 178
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT--- 227
PE T++ + K +++ + +++L V YQ D
Sbjct: 179 PEPSDETGVTNVVVAKNGRVLE------DNMGAQQLQLNNGVRYQGSPRLKDYQMIEFGG 232
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ IK + + ++ + +++K + A +F++ + IPL + M
Sbjct: 233 YKMQIKEQQVDERRRKLSALTVTDLLK----------VESAEAVAEFHWRLAIPLAIPIM 282
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
TLIA ++ R + + + + ++ + + G++ +
Sbjct: 283 TLIAVPLARVNVRQGKFAKM-LPAVLLYLGYFGLMVAGRKALQDGVIPQYLGMWWIHLSA 341
Query: 348 ISLSILIL 355
+ + I +L
Sbjct: 342 LIMGIFLL 349
>gi|225551662|ref|ZP_03772606.1| permease, YjgP/YjgQ family [Borrelia sp. SV1]
gi|225371689|gb|EEH01115.1| permease, YjgP/YjgQ family [Borrelia sp. SV1]
Length = 333
Score = 89.5 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 55/340 (16%), Positives = 119/340 (35%), Gaps = 23/340 (6%)
Query: 25 MILVFVID-LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLN 83
MIL+ + D + N + + N + + +P + L + NL+
Sbjct: 1 MILIMLGDLFVNLLNYLEK--NIGLKDILYIYYLYLPKAFSDGVALSFLFAISNLIGNLS 58
Query: 84 RTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGD 143
+E++ + G+ + ++L P ++ SI + + N + LI+ GD
Sbjct: 59 MRNEIIGLFSCGVPLTRILKPIILISIFISVVLFFFDNYLVIDTIARRDVLIKN--SIGD 116
Query: 144 KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYN 203
+ D ++ + K + + + + I D K++ R D + A +
Sbjct: 117 SRSGDKTIIIRDLARE---IYNIKSYDIDENTFANLMIIIKDSKDEFQTRYDINKAEWKD 173
Query: 204 DKVKLKKVVEYQYGRIPIDKNST-----TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSF 258
+K KL + E+ I +N+ T I + D + + +F ++I +SF
Sbjct: 174 NKWKLYGIREFVKVGKKIKENAYDVLDGTGIIKLAPDYIRTVMLSSKALNFTKLINWISF 233
Query: 259 SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF----SRSNQPRIIVAYGIFS 314
F+ L+ + L+ S ++ F + N + + I
Sbjct: 234 LKS----ERLNYSDAFFDLLNRIFFSFRLILL--SFTVGFIALALKKNIFILSLLNSIAF 287
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ I I G L A+ I + ++ +
Sbjct: 288 AVVYVISIVIFNFLADLGYLHIYIASSFTTIFFLIINFFV 327
>gi|254786690|ref|YP_003074119.1| permease, YjgP/YjgQ family [Teredinibacter turnerae T7901]
gi|237683657|gb|ACR10921.1| permease, YjgP/YjgQ family [Teredinibacter turnerae T7901]
Length = 378
Score = 89.5 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 44/370 (11%), Positives = 119/370 (32%), Gaps = 28/370 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L + L ++++ + L A R+P +
Sbjct: 2 IIFRYLAREVLSSMFAVSLVLLMIIISARFVNYLAEAAA-GKLDAGVLLTLMAYRLPAYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++ + L SE+ + A G+S +L+ + S+++ + L +
Sbjct: 61 ELILPLGLFIGILMAYGRLYLDSEMTVLSACGLSQKRLVGYTLAASLVVAMLVGLFSLYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED----- 178
G K L+ + ++ D + + + A+ I +
Sbjct: 121 GPQGVKASEALLAEQRNRTDFETLKPSRFHTLDQGAGTS--YAESISEDKKQLRGVFMAK 178
Query: 179 FTSITIDKKNKIIHRKDADLAII-------------YNDKVKLKKVVEYQYGRIPIDKNS 225
+ I + ++ADL ++ + LK Y +
Sbjct: 179 VSPIDPADDLDKVTHQEADLTVLTAESGETVIDPQSGQKYLLLKNGRRYVGTPGTQNYQV 238
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
++ ++ + + F + + A + +P++++
Sbjct: 239 VEFGNFSQLLPEPDYAVKP--KRFTDGLTTFKLLQAK----TREASAALQWRFSMPVLVM 292
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
+ L+A +S R + + I + + + + G + +
Sbjct: 293 IVGLLAVPLSKTQPRQGRYAKM-LPAIILYMVYLVCVNAARGLIEKGNEPVPGMLWLVHL 351
Query: 346 LTISLSILIL 355
L ++++ +L
Sbjct: 352 LFFTVALFLL 361
>gi|190150428|ref|YP_001968953.1| hypothetical protein APP7_1159 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|303250152|ref|ZP_07336354.1| permease [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|303253325|ref|ZP_07339474.1| permease [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|189915559|gb|ACE61811.1| hypothetical protein APP7_1159 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|302648007|gb|EFL78214.1| permease [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|302651215|gb|EFL81369.1| permease [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
Length = 367
Score = 89.5 bits (221), Expect = 7e-16, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 118/359 (32%), Gaps = 23/359 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ L L +++ F L + N L +P +
Sbjct: 2 ILSRYLTKEIFKSQLAILFILLLMFFSQQLITVLNSAVS-GKVPTDLVLSLLGLGMPALA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P V ++ SE+ + RA GI L SI V + +
Sbjct: 61 QFMLPLSLFVALLLTLGRFYAESEITVMRACGIGKSLLTKVAFFLSIFTTALAVYNVFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+++ + K N +M + + I E + D
Sbjct: 121 TPWAINKQSEMLAEAKSNPRFSALSAGQFMTAGG----YVLFIENINNEQNKLNDIYVFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
D++ K A+ + + + L+ Y+ D + + G+
Sbjct: 177 PDQQKKNRPSVVVAESGQLQGLPNGDQILTLENSTRYEGTANVADFRISHFDSYQAYLGY 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q + K M+ + + +F ++ +PL M L+A +S
Sbjct: 237 QDVDSNEKLVQRADFNKLMADQSNEA---KAELQWRFALILAVPL----MALLAVPMSSV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP--VILTISLSILI 354
R + ++ + + + + + +KS G SG L L+P I L++++
Sbjct: 290 NPRQGRFAKVI-PAVLLYLIYFLLQSSLKSSGASGKLDATL--LMPLVSIAFFILAMVM 345
>gi|163743163|ref|ZP_02150545.1| hypothetical protein RG210_14720 [Phaeobacter gallaeciensis 2.10]
gi|161383580|gb|EDQ07967.1| hypothetical protein RG210_14720 [Phaeobacter gallaeciensis 2.10]
Length = 376
Score = 89.5 bits (221), Expect = 8e-16, Method: Composition-based stats.
Identities = 50/365 (13%), Positives = 124/365 (33%), Gaps = 33/365 (9%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
YL +F L + + ++ + +++ S A +P +++ ++P
Sbjct: 1 MLSQYLLFFGFFALILVAVFWINRAVVLFDRLIG-DGQSALVFLEFTALALPNLVRMVLP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
++ V LN SEL + RA G S WQ+ P +V ++ + ++ + + +
Sbjct: 60 VAAFAASVWVTNRLNSESELTVLRATGTSPWQMAKPALVFGLITAVMMSILTHVLLPASI 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ N + ++ +P + + +I P+ T++
Sbjct: 120 ATLEQRESEVARNVTAKLLSEGDFL---HPARGVTFYIGRIDPDG---------TLNDVF 167
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKM---------- 234
R A+ K L + E + N+ T + +
Sbjct: 168 LSDRRNAAESVTYTGGKAYLVRDGERTHLVMVDGMSQRINTETQRLSSTIFSDFSYDISS 227
Query: 235 --DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ ++ + + E++ + + + + L+ VA+ LI
Sbjct: 228 LANKAEEKTRNIRAIPSLELLGDRAKLVADGPYSAGALAEELHLRFARALVCVAVVLIGF 287
Query: 293 SVSL--EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ + FSR R + + F+ + + ++ L P+ IP ++ + +
Sbjct: 288 AALMLGGFSRFGVWRQALLAFVLLIFVEGLRGVVSEPVLQNAELWPLI--YIPTLIGLLV 345
Query: 351 SILIL 355
++ L
Sbjct: 346 GLVFL 350
>gi|34763637|ref|ZP_00144566.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27886690|gb|EAA23834.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 191
Score = 89.5 bits (221), Expect = 8e-16, Method: Composition-based stats.
Identities = 29/192 (15%), Positives = 64/192 (33%), Gaps = 13/192 (6%)
Query: 177 EDFTSITIDKK-NKIIHRKDADLAIIYND--KVKLKKVVEYQYG-RIPIDKNSTTLNI-- 230
E+ + + + +K A A D K V Y + + K ++
Sbjct: 3 ENIEVVKFETQISKPKEIITAKSAKFDTDEDKWIFSNVNIYNVDTKETVTKTEYKSDLYK 62
Query: 231 --PIK-MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
P + + + + IK+ + + P +
Sbjct: 63 DDPSNFIRASAEDPRMLTIKELKKTIKEQKNIGE----DTRIYLAELAKRYSFPFASFIV 118
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
I S S ++ R + + + + +G+ Y + ++ +GI+ P A+ IP IL
Sbjct: 119 AFIGLSASSKYVRGGRTTMNLVICVVAGYGYYLVSGAFEAMSLNGIVNPFVASWIPNILY 178
Query: 348 ISLSILILLQKE 359
+ + I + + E
Sbjct: 179 LIIGIYFMNRAE 190
>gi|163739704|ref|ZP_02147112.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
gi|161386934|gb|EDQ11295.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
Length = 376
Score = 89.5 bits (221), Expect = 8e-16, Method: Composition-based stats.
Identities = 50/365 (13%), Positives = 124/365 (33%), Gaps = 33/365 (9%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
YL +F L + + ++ + +++ S A +P +++ ++P
Sbjct: 1 MLSQYLLFFGFFALILVAVFWINRAVVLFDRLIG-DGQSALVFLEFTALALPNLVRMVLP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
++ V LN SEL + RA G S WQ+ P +V ++ + ++ + + +
Sbjct: 60 VAAFAASVWVTNRLNSESELTVLRATGTSPWQMAKPAMVFGLITAVMMSILTHVLLPASI 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ N + ++ +P + + +I P+ T++
Sbjct: 120 ATLEQRESEVARNVTAKLLSEGDFL---HPARGVTFYIGRIDPDG---------TLNDVF 167
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKM---------- 234
R A+ K L + E + N+ T + +
Sbjct: 168 LSDRRNAAESVTYTGGKAYLVRDGERTHLVMVDGMSQRINTETQRLSSTIFSDFSYDISS 227
Query: 235 --DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ ++ + + E++ + + + + L+ VA+ LI
Sbjct: 228 LANKAEEKTRNIRAIPSLELLGDRAKLVADGPYSAGALAEELHLRFARALVCVAVVLIGF 287
Query: 293 SVSL--EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ + FSR R + + F+ + + ++ L P+ IP ++ + +
Sbjct: 288 AALMLGGFSRFGVWRQALLAFVLLIFVEGLRGVVSEPVLQNAELWPLI--YIPTLIGLLV 345
Query: 351 SILIL 355
++ L
Sbjct: 346 GLVFL 350
>gi|120553894|ref|YP_958245.1| permease YjgP/YjgQ family protein [Marinobacter aquaeolei VT8]
gi|120323743|gb|ABM18058.1| permease YjgP/YjgQ family protein [Marinobacter aquaeolei VT8]
Length = 367
Score = 89.5 bits (221), Expect = 8e-16, Method: Composition-based stats.
Identities = 47/362 (12%), Positives = 122/362 (33%), Gaps = 28/362 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + + + L +++ + E + + R P +
Sbjct: 3 IIFRYLIRQIMVSMLAVSGILLLVFMSGRFIKYLADAAE-GEIAAGVLFAIMGYRFPGFL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++ + + SE+ + A G+S QLL ++G++ + + ++ I
Sbjct: 62 ELILPLGLFIGILLAYGRMYLESEMTVLFACGVSEKQLLAKTLLGALPVMLVVGVMSLYI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ G K + + + + + + P D + + + +
Sbjct: 122 SPWGMKQVEHIFNEQRKATEFEM--LAPGRFQDFTSGDRVTYTEALSDDKRQLQGVFIAE 179
Query: 184 IDKKNKIIHRKDADLA------IIYNDKVKLKKVVEYQYGRIPIDKNSTT-----LNIPI 232
DK K + A+ + + L+ +Q +D N T L I
Sbjct: 180 YDKDGKGVTLITAESGSQFIDEETGSRFLVLEDGGRFQGAPGRLDYNVTEFEAYGLKIVS 239
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+G ++ E ++ + + N ++ I +PL++ +TL+A
Sbjct: 240 GQEGSKELEEGLSTLALWN-------------SDNPEDRALLHWRISLPLIVPIVTLLAV 286
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+S + + + ++ + + + L L ++L +
Sbjct: 287 RLS-RVNPRQGRFFHLLPAMLVYITYLGLLIVARDALADEKVPEWVGMLWVHALFLALGL 345
Query: 353 LI 354
+
Sbjct: 346 WL 347
>gi|226320855|ref|ZP_03796407.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 29805]
gi|226233721|gb|EEH32450.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 29805]
Length = 333
Score = 89.1 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 54/340 (15%), Positives = 117/340 (34%), Gaps = 23/340 (6%)
Query: 25 MILVFVID-LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLN 83
MIL+ + D + N + + N + + +P + L + NL+
Sbjct: 1 MILIMLGDLFVNLLNYLEK--NIGLKDILYIYYLYLPKAFSDGVALSFLFAISNLIGNLS 58
Query: 84 RTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGD 143
+E++ + G+ + ++L P ++ SI + + N + LI+ GD
Sbjct: 59 MRNEIIGLFSCGVPLTRILKPIILISIFISVVLFFFDNYLVIDTIARRDVLIKN--SIGD 116
Query: 144 KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYN 203
+ D ++ + K + + + + I D K++ R D + A +
Sbjct: 117 SRSGDKTIIIRDFARE---IYNIKSYDIDENTFANLMIIIKDNKDEFQTRYDINKAEWKD 173
Query: 204 DKVKLKKVVEY-----QYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSF 258
+K KL + E+ + D T I + D + + +F ++I +SF
Sbjct: 174 NKWKLYGIREFVRVDKKIKENAYDVLDGTGIIKLAPDYIRTVMLSSKALNFTKLINWISF 233
Query: 259 SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF----SRSNQPRIIVAYGIFS 314
F+ L+ + L+ S ++ F + N + + I
Sbjct: 234 LKA----ERLNYSDAFFDLLNRIFFSFRLILL--SFTVGFIALALKKNIFILSLLNSIAF 287
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ I I G L A+ I + ++ +
Sbjct: 288 AVVYVISIVIFNFLADLGYLHIYIASSFTTIFFLIINFFV 327
>gi|89891367|ref|ZP_01202873.1| permease YjgP/YjgQ [Flavobacteria bacterium BBFL7]
gi|89516398|gb|EAS19059.1| permease YjgP/YjgQ [Flavobacteria bacterium BBFL7]
Length = 481
Score = 89.1 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 31/181 (17%), Positives = 69/181 (38%), Gaps = 5/181 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY ++KT L + M ++ + + + + + A +P+I
Sbjct: 2 KILDRYILTSFIKTFLSVFIVIMFILILQAIWLYIKDLAGK-DLDMITIAKFMMYTIPVI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P ++ +I+VF N+ E ++ GIS+ + + ++ LG+ + N
Sbjct: 61 VPLALPLSIILASIMVFGNMAENYEFAAMKSNGISLQRAMRSLMIVVGTLGVTSFFFANT 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G +L + ++ + + N DI I + + + D I
Sbjct: 121 VIPWGHFKQGNLRRNIVNSKPAMAIGVGNF----NQLGDINIKVDQKTGDRGQYLDNVLI 176
Query: 183 T 183
Sbjct: 177 H 177
Score = 46.0 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
+ E + V+ + + I A + R + + + I +
Sbjct: 362 KHEIEIQKKFVLGAACIILFFIGAPLGA-IIRKGGMGLPLVIATLFFLTYHFINIFAEKS 420
Query: 329 GKSGILLPVAAALIPVILTISLSILI 354
G A + ++ L IL+
Sbjct: 421 AVEGAFPTWLGAWMGTLIIFPLGILL 446
>gi|301058944|ref|ZP_07199913.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
gi|300446940|gb|EFK10736.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
Length = 358
Score = 89.1 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/327 (17%), Positives = 113/327 (34%), Gaps = 15/327 (4%)
Query: 4 ILWRYFFKYYLK---TTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
I+ RY + K T L+G E Q G+LP S +L R+
Sbjct: 2 IIDRYIMREISKPAMTICTVLMGIFGSYIATRYLEDAVQ-GQLPG---STVILLVLLRIA 57
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++ ++P + ++ F +E+ A GIS+ ++L P ++ ++ G+
Sbjct: 58 ISLEVLLPTTLYLSVMIAFGRFYMNAEMTGMSACGISMVRVLKPVMLLAVTAGMIVACFS 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I +L K + D + + +I + + A K+ H
Sbjct: 118 LYIRPWAWNQFFELKTGAKVDFDITRMKGGNFYEI--EDGERVLFADKVDHGKHRALHV- 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-PIDKNSTTLNIPIKMDGFQK 239
+ I + ++ A+ A + V+ +Q GR+ + T I ++ +
Sbjct: 175 FMQIKRHGEL-EIVYAESATQRFRNTTPEPVLVFQNGRLYTFSETEKTWKI-LQFRNLEM 232
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ K S + H + + + P + + L+ +S F
Sbjct: 233 SLTSNNVEPLKQKAKAFSTEQLWHSDHPEAL-AELQWRLTAPFSTILLALLGVPLSRSFP 291
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMK 326
R + V GI + Y + I K
Sbjct: 292 RQGK-YTKVPLGILVFAVYYNLSAITK 317
>gi|296272453|ref|YP_003655084.1| permease YjgP/YjgQ family protein [Arcobacter nitrofigilis DSM
7299]
gi|296096627|gb|ADG92577.1| permease YjgP/YjgQ family protein [Arcobacter nitrofigilis DSM
7299]
Length = 356
Score = 89.1 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 57/368 (15%), Positives = 136/368 (36%), Gaps = 31/368 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ +Y + +++ + L+ I ID + +++ S + + +
Sbjct: 3 IITKYLLRKFIRNFVIVLISLQIFFVGIDFLQNFDEVPN----SANLQLLYILYNSFFTL 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV-INP 122
+P + I+ + +T+E+V S ++G+ Q+ P V SI+L + + + P
Sbjct: 59 TLTLPLSLVFGWIITIVIMVKTNEMVASFSLGVGNRQIFMPVVNVSIILIVLLIGFQMTP 118
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A S E L + + D F+ KK+ P ED
Sbjct: 119 LAYSYEYKEKILKNTYFTSSKSDIFVKY---------NDYFVYFKKLYPLQKYAEDIHIY 169
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVV--------EYQYGRIPIDKNSTTLNI---- 230
+ + I A A N++ + ++ +I I +
Sbjct: 170 KVVDDD-IEEGIVAKKAYFQNNRWYVLDARITKKPKVIDWNNSKIEIHHEKFLYTLEGFK 228
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P +D + + F+ + ++ + + Y+ IV PL V + ++
Sbjct: 229 PKILDSVYESTSSFSILDAITALTLLNDQE----VNTSKIRASLYYEIVAPLYFVPLIIL 284
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
S + SR ++ I + +++ + ++ F G++ P + L+P+ L +
Sbjct: 285 IFSYTSFNSRFFNIGKFTSFSIAATLVIWGVFFMLHKFSSGGVINPEISILLPIFLWYII 344
Query: 351 SILILLQK 358
+ +++ ++
Sbjct: 345 TYILIKKQ 352
>gi|163792838|ref|ZP_02186814.1| Predicted permease [alpha proteobacterium BAL199]
gi|159181484|gb|EDP65996.1| Predicted permease [alpha proteobacterium BAL199]
Length = 369
Score = 89.1 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 49/320 (15%), Positives = 116/320 (36%), Gaps = 15/320 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY L ++ ++ ++++ + + I L +P +
Sbjct: 3 ITRYLAGQILTAMVFIVVSMTCVIWLSQSLRFVDLIVNR-GLPIPSFVYLTLMLMPTWLS 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P + V+ L ELV+ A G+S +L P +V ++ + T L+ +
Sbjct: 62 IVLPIAAFAATVFVYNKLTNDRELVVLSAAGLSPLRLAGPAMVVAVATMLATYLMTLYLV 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE-------NHIWE 177
+ +L Q + N D + +++ A++ + +
Sbjct: 122 PMSYRGFKELQFQIRHNFDHLVLREGE-FRSIGDGLTVYVRAREDTGQLAGIVVHDQSNA 180
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
T + ++ +I + ++ N + + V + + D+ T+++ +
Sbjct: 181 KKTVTLVAERGALITAPEGPRVVMANGSRQERDVETGRVSVLYFDR--YTIDLGAMREEV 238
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV--S 295
Q+ +++ F Y AE + + PL+ +++T I +V S
Sbjct: 239 QRTIRDQNELFIDDLLHPTEQITDPKNFDEYIAEG--HQRLTSPLLALSLTAIGVAVLLS 296
Query: 296 LEFSRSNQPRIIVAYGIFSG 315
EFSR Q I+ + +G
Sbjct: 297 GEFSRRGQTIRIITAVLLAG 316
>gi|119944176|ref|YP_941856.1| permease YjgP/YjgQ family protein [Psychromonas ingrahamii 37]
gi|119862780|gb|ABM02257.1| permease YjgP/YjgQ family protein [Psychromonas ingrahamii 37]
Length = 358
Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/358 (13%), Positives = 116/358 (32%), Gaps = 23/358 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K+ + L +++ I Q L +P +
Sbjct: 2 ILLRYLMLETFKSQIGILFVLVLIFVSQKFITILAQAIN-GVIPADLVMTLLYLNLPQLG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + + L+ SE++ + G S +L ++ S L F +
Sbjct: 61 TLMLPISFYLAVLFAHGRLHGESEMIAMSSCGYSPNNVLKATLLLSFLTFAFAAYNSLYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E I +I++ + N + + S ++I + + +
Sbjct: 121 APLSEDKMISVIEEAQANTSSATLIEGRFHKTSGNGSVVYI----EKSADKKLDKIFAAH 176
Query: 184 IDKKNKII-HRKDADLAIIY---NDKV-KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ K A + + L Y + + +
Sbjct: 177 WPEDRKQAPSVLTAAEGYLESKKDGTWLTLTDGQRYAGIVGQHEFDHSEFKT-------- 228
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ A+R + ++ + + +F N + + + + I IP+ ++ MT +A ++
Sbjct: 229 -YEVHIANREVQKQVRGVQALPTAALFSVDNPKYQAELQWRIGIPVSILLMTFMAVPLAK 287
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + +++ KS + G L + I I + L I++
Sbjct: 288 VNPRQGRYSK-LLPALALYLTFFLLLSTAKSLIEDGSLPVF-SIWIVQISFLLLGIIL 343
>gi|294139610|ref|YP_003555588.1| hypothetical protein SVI_0839 [Shewanella violacea DSS12]
gi|293326079|dbj|BAJ00810.1| conserved hypothetical protein [Shewanella violacea DSS12]
Length = 370
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/362 (14%), Positives = 133/362 (36%), Gaps = 24/362 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + LK + LL + + + + + S L +P ++
Sbjct: 2 IVFRYLIREVLKAQIAVLLVLLAIFISQHFVRVLADASD-GEFPASLVMTLLGLNLPYLL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IP + ++ + SE+VI +G+S W + ++ ++ IFT ++ +
Sbjct: 61 VLVIPLSLFLGILMAHGRMYADSEMVILHGVGVSEWYITRVTLLLAVGNMIFTAMLSVYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E+ +++ + + ++P + ++I N + + F +
Sbjct: 121 TPWAEERQNQVLENAQSEAGLAAITQGRF--QTSPNGRAVLFVERIGRNNELQKVFVAQL 178
Query: 184 IDKKNK--IIHRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIK 233
D ++ + + A+ + +++L V+YQ +D + IK
Sbjct: 179 PDPDDESGMSNIVVAEGGKVIEDDTGGQRLQLSDGVQYQARPKHVDFQIIEFGGYQMQIK 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + ++ +++ + + +F++ + IPL + MTLIA
Sbjct: 239 EQPVDERRRKLSAMPINDLMDIDGPAATA----------EFHWRLAIPLAIPLMTLIAVP 288
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ R + + I + ++ + + G++ + L IL
Sbjct: 289 MARVNVRQGKFAKM-FPAILLYLGYFGLMIAGRKALEDGVVPEYLGMWWIHASALFLGIL 347
Query: 354 IL 355
+L
Sbjct: 348 LL 349
>gi|92115033|ref|YP_574961.1| permease YjgP/YjgQ [Chromohalobacter salexigens DSM 3043]
gi|91798123|gb|ABE60262.1| permease YjgP/YjgQ [Chromohalobacter salexigens DSM 3043]
Length = 386
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/361 (12%), Positives = 112/361 (31%), Gaps = 23/361 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + + S L +P +
Sbjct: 28 IVFRYLTREILATMAAVAGVLLLVIMGSRFIRYFGDAAQ-GDIPASILGTLMLYHLPGFM 86
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ ++P + ++ F L SE+ + A GIS +LL + ++L+ + L +
Sbjct: 87 ELVLPLSFFLGILLAFGQLYLNSEITVLVACGISPNRLLRVTLWPALLVALLVALCSLWL 146
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+G + ++++ K D + + + + + + + E
Sbjct: 147 TPNGARHNEMVLEEQKSRLDFSVLQPGRFQEFGSGR---TAYTESLNDDRSRMESVFISE 203
Query: 184 IDKK-----NKIIHRKDADLAIIYND----KVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ ++ R D + +D + L Y +
Sbjct: 204 RQPRSDGTPETVVTRADGGYQTVDDDTGSRFLVLTDGERYSVEPGNHVAERVQFDTYAVR 263
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + + + + +PLM+ +TL+A +
Sbjct: 264 LSQASERVDLQAAELTSTPQLLERGGSEA-------WANLQWRLSMPLMVPILTLLALPL 316
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT-ISLSIL 353
S R + + IF +++ + G L P P+ L + L +
Sbjct: 317 SRVNPRQGRFAK-LLPAIFLHISYLSLLLAAQDAIARGSLAPTIGMW-PIHLGYLLLGVW 374
Query: 354 I 354
+
Sbjct: 375 M 375
>gi|209694120|ref|YP_002262048.1| putative permease [Aliivibrio salmonicida LFI1238]
gi|208008071|emb|CAQ78212.1| putative permease [Aliivibrio salmonicida LFI1238]
Length = 370
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/365 (12%), Positives = 121/365 (33%), Gaps = 32/365 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K LK+ L ++ +I + + L +P +
Sbjct: 2 IIIRYLIKETLKSQLAIFFVLFLIFMSQKFIQILADASD-GDIPGGLILSLVGYNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A G+ L+ + +++ G + +
Sbjct: 61 LLMLPLSIFIGILLTFGRLYAESEITVMNATGMGNSILIRAALYLALITGSIAAVNSLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI-WEDFTSI 182
+ ++ L++ + + + + +P + I + +
Sbjct: 121 SPWSQEQSTKLMENVESDAGIELLQKGQFK--PSPDGKAVVFIDDISDKGGKHLVNIFLA 178
Query: 183 TIDKKNKII-HRKDADLAI---IYNDK--VKLKKVVEYQYGRIPID---KNSTTLNIPIK 233
+ + ++ + + + + L Y+ +D N + + I
Sbjct: 179 QPVPNDSLRPSVLISEKGTVKQLDDGRQVLVLDNGTRYEGIPTRLDYLESNFESYEVLIG 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
++ + + ++IK+ K+ + + ++ IPL+ + + ++A
Sbjct: 239 QKEVKEKRRDWDALPTLDLIKRTELEAKAE------LQWRISLILCIPLLTMVVVPLSA- 291
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS----GILLPVAAALIPVILTIS 349
V+ R + + LY + S GKS G L P + +
Sbjct: 292 VNPRQGRFAKLAPAIL--------LYLAYFLSLSAGKSAIEEGSLHPSVGLWAINAVLLI 343
Query: 350 LSILI 354
+ I++
Sbjct: 344 IGIIL 348
>gi|157165310|ref|YP_001466458.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter concisus
13826]
gi|112801662|gb|EAT99006.1| permease YjgP/YjgQ [Campylobacter concisus 13826]
Length = 354
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 72/362 (19%), Positives = 139/362 (38%), Gaps = 30/362 (8%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY Y+K+ L L + IDL + N + + A I +
Sbjct: 6 RYVGWVYIKSFLIVFLALELFYVGIDLLTNLKDLPPSANLQLLYVGLTAL----SAISYV 61
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV-INPIAT 125
+P + I++ N+ R++EL+ A+GIS +L+ P + + + IF V + P A
Sbjct: 62 LPLSLIFALIILHVNMVRSNELISFYALGISKNKLILPPFLIAFFVTIFYVGLNFTPFA- 120
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
D + N KS +++ FI K++ D I+
Sbjct: 121 ----YAHDYQKSIAKNTAFSKSTNDSFLKFEGK----FIYIKELNSAKQRANDVRIFDIN 172
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQ----KF 240
+ + AD A +++ L+ V + + + +N + +D + K
Sbjct: 173 GTDLLST-TFADHAKFKDNEWVLEDVNQTFLPQNLELGENGFSKVKSENLDALRGFKPKS 231
Query: 241 SEQFASR--SFYEIIKKMSFSN--KSNIFHNYRAETQFYFLIVIPLMLVAMTLI---AAS 293
E AS S + I ++F K+ A T FY L + P + LI
Sbjct: 232 IESAASVENSKFNIPDAINFIKTFKNEGIGLDSARTAFYNLAITPFFAPFLLLIFYYHLP 291
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
V+ F + + +++ ++ I+ F ++ ++LP ++PVIL + +I
Sbjct: 292 VTGRFF---NLALSTFIFVVITLVVWGLLFILTKFAQTSVILPEIGMVVPVILLFAYAIY 348
Query: 354 IL 355
++
Sbjct: 349 LI 350
>gi|229588597|ref|YP_002870716.1| putative ABC transporter membrane protein [Pseudomonas fluorescens
SBW25]
gi|229360463|emb|CAY47320.1| putative ABC transport system, membrane protein [Pseudomonas
fluorescens SBW25]
Length = 372
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/361 (13%), Positives = 119/361 (32%), Gaps = 20/361 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAAS-GALDPGSLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL ++ + + + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMIPAAGVALIVAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS-- 181
A G ++ + + + + P + + + +
Sbjct: 121 APQGAMQFQLVLNKQ--DAMTEFDTLEPGRFQALNDGSRVTYTETLTDDRANLGGVFISE 178
Query: 182 --ITIDKKNKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ DKK++ I AD + + L+ Y D + + M
Sbjct: 179 KRLGQDKKDRGISVLVADSGRQEVRPDGSRYLILENGYRYDGSPGMADYRAIKYDTYGVM 238
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
S++ R + + R+ Q + + +PL++ +TL+A +
Sbjct: 239 LARPDISDEVTDRDAIPTMDL-------FGSNELRSIAQLQWRLSLPLLVFIVTLMAVPL 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + I T++ + G L P + +++ + +
Sbjct: 292 A-RVNPRQGRFLKLLPAILLYMAYLTMLISAHGAVEKGKLSPTLGLWWVHGIFLAIGLGL 350
Query: 355 L 355
L
Sbjct: 351 L 351
>gi|258593793|emb|CBE70134.1| putative Permease YjgP/YjgQ family protein precursor [NC10
bacterium 'Dutch sediment']
Length = 356
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/360 (13%), Positives = 123/360 (34%), Gaps = 24/360 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY + K + F G ++L N++ + L R + +
Sbjct: 5 LLDRYLTREIAKPLVIFCGGLLLLFANFTAVRYLNRVAD-GIMPFQSVLPLVLVRAAVAL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ ++P + +V L SE+ + G+S +++ VGS+++ + +
Sbjct: 64 ELLLPIALHLSVVVTLGRLYTDSEMTALFSSGVSPSRIMRIVCVGSLIVAGIVAFLSIYV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L ++ + D + + S+ + ++ + + +
Sbjct: 124 RPWANENRYRLEREAAADVDLNDMQPGHFYENSSG---TVLFFQRRAQSSGRMREVFIQS 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ I AD A + VE GR + + + ++ +
Sbjct: 181 RSEDR--IRLIWADEAHY-------PEAVEAGAGRTLVCSGAQIYELSRDRGAVRQATSD 231
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAE--------TQFYFLIVIPLMLVAMTLIAASVS 295
+E + +S K ++ +F + + P+ + M L+ +S
Sbjct: 232 -ELVLEWEKARTLSEEYKRKAAPTWQLARSASPKDIAEFQWRLSTPVAALLMGLLGFPLS 290
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA-LIPVILTISLSILI 354
+R + + + S Y + + + + + G++ V + ++L I ++ L+
Sbjct: 291 RARARQGKYAKLFV-SVVSYATFYNLNMMARHWVEKGVVSTVPGIWWVHLLLAILVASLL 349
>gi|119503287|ref|ZP_01625371.1| predicted Permease [marine gamma proteobacterium HTCC2080]
gi|119460933|gb|EAW42024.1| predicted Permease [marine gamma proteobacterium HTCC2080]
Length = 363
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/356 (12%), Positives = 120/356 (33%), Gaps = 23/356 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + + TL ++VF + + + + S + ++P + I+
Sbjct: 6 YLTRDVVTHTLAVAFVLFLVVFSGRFIKYLAEAA-VGSLSADVLLPVMLFKLPSFFELIL 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + ++ + SE+V+ +A GIS +L +V + + + + G
Sbjct: 65 PLALFIAVLLSLGRMYAESEMVVLKACGISPSRLAVFLLVPGLFIMCLVAGLTMYLGPEG 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
L+ ++ Q + ++ ++I + + +
Sbjct: 125 SARAQRLLDNPRNAEGLQLMAAGRFKSQRG--GELVTYTERIDKAG-VMHNVFVVEEQSG 181
Query: 188 NKIIHRKDADLAIIYND------KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
A A I D ++L+ Y + ++ ++ S
Sbjct: 182 TDATQVTLAQEAEIITDSATNRRYLELRGGTRYSGVPGESAYEAVAFKRLGELIPEERDS 241
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNY--RAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ ++R + + +++ + R ++ I +P ++ +IA ++S +
Sbjct: 242 LRASTR--------IDATPTADLLSSDNPRKRATLWWRISLPFLVPVSVVIALALSKTDA 293
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + + +T +S +SG A L ++ +++ +L
Sbjct: 294 RRGR-YARLGPALALFLTYFLALTQARSLMESGSGP--GAMLATHLMFSLVALFLL 346
>gi|116330556|ref|YP_800274.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
gi|116124245|gb|ABJ75516.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
Length = 606
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 65/465 (13%), Positives = 133/465 (28%), Gaps = 110/465 (23%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
IL RY L L L ++ V+ L ++ R +
Sbjct: 104 IPILNRYILGEILSPFLVALAFFTMVYMVLALQKMIGLFVGK-GVDPLRLLDYFGYLLAN 162
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP L+ I+ L+ SE+ R+ G+S ++ F+ ++ + V +N
Sbjct: 163 TLPMTIPMACLMSGIMAAGRLSGDSEITAIRSAGVSFPRIYINFLAFGFVMALV-VAYLN 221
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF------IGAKKILPENHI 175
+ ++ +W + + I P + QD+F + + +
Sbjct: 222 FYLSPENTRKMNEFNKWVLAYNPLLA-ITPGQFSGDKTQDLFEKRARTMYTDGMNSDTGQ 280
Query: 176 WEDFTS----ITIDKKN--------------KIIHRKDADLAIIYN-------------- 203
+ I ++ +II +A +
Sbjct: 281 LKGVQIREWEIFLEGNEYFNLGGKMIPMGGSRIIQIINAGKGNLVEKIGPDGEYEKSIRL 340
Query: 204 -DKVKLK--------KVVEYQYGR----IPIDKNSTTLNIPIKMDGFQ-----KFSEQFA 245
D L+ V +++ G IP K TL + +K + F +
Sbjct: 341 KDGWILEWSDDRKSFSVTDFRNGEMDYNIPKGKEKKTLELNVKPETFSMPVLFQIRNNIE 400
Query: 246 SRSFYEIIK------------------------KMSFS-NKSNIFHNYRAETQFYFLIVI 280
S +I K+ + +N TQ Y ++
Sbjct: 401 SEGLEKIPGLETLKEMGVEIKGLIGLKQMVEQMKIDLAMGAANGTLTPDQMTQNYSVLTQ 460
Query: 281 -------------------------PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG 315
P+ + I+ + L RS + + +
Sbjct: 461 LMALMQQGKKVLTDFNVEIHRRIAMPISCLIFFFISFPLGLVVKRSGK-GMSFTLAVVFL 519
Query: 316 FMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ +T T+ + + + IL LSI I++++ D
Sbjct: 520 MIYFTFFTLGSTISYNDKVPDWIGPWSANILIALLSINIMIKRTD 564
>gi|307638154|gb|ADN80604.1| Permease [Helicobacter pylori 908]
gi|325996753|gb|ADZ52158.1| Permease [Helicobacter pylori 2018]
gi|325998348|gb|ADZ50556.1| hypothetical protein hp2017_1432 [Helicobacter pylori 2017]
Length = 355
Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 130/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+LNP S+ V +
Sbjct: 59 YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKRQILNPIFFISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L Y+ + N+T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTRLETFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALMRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P L ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLW 346
>gi|315634608|ref|ZP_07889892.1| inner membrane protein YjgP [Aggregatibacter segnis ATCC 33393]
gi|315476556|gb|EFU67304.1| inner membrane protein YjgP [Aggregatibacter segnis ATCC 33393]
Length = 364
Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/314 (14%), Positives = 105/314 (33%), Gaps = 24/314 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + L +++ F L + L +P +
Sbjct: 2 ILTRYLTKEVFKSQIAILFILLLIFFCQQLVRVLGSAAN-GQVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ L SE+ + RA G+ L+ ++ S+ G +
Sbjct: 61 QLMLPLCLFIAILLTLGRLYAESEITVMRACGVGSKILVKVVLILSLFTGALAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +I++ K N + +M +N +FI + + +
Sbjct: 121 SPWAINKQVAIIEEAKANPNMGALSAGQFMTANNSDFVLFI----DDIQENQINNVYVFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKM 234
K + A+ + + ++L+ ++ I D T +
Sbjct: 177 TQPKGQTKPSVIVAEQGELKSLPNGDQILRLQNSDRFEGTAILPDFRITHFDEYQAYLGH 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ S + S +++ +T+F++ + + L + M L+A +
Sbjct: 237 KAVEDDSNEAGEMSLMQLLN----------ADTPAMKTEFHWRLTLILAVPIMALLAVPL 286
Query: 295 SLEFSRSNQPRIIV 308
S R + ++
Sbjct: 287 SRVNPRQGRFAKVL 300
>gi|296115281|ref|ZP_06833921.1| putative permease [Gluconacetobacter hansenii ATCC 23769]
gi|295978184|gb|EFG84922.1| putative permease [Gluconacetobacter hansenii ATCC 23769]
Length = 406
Score = 87.6 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 59/381 (15%), Positives = 127/381 (33%), Gaps = 43/381 (11%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MPG L Y + L M + + L + N + + + ++L VP
Sbjct: 9 MPGTLDHYLLQQVTPPFSISLGVVMAALLLERLLALFNLLASNGSSMKTFVSLLTDL-VP 67
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P V V +++ E+ A G+S++++ PF+V +LG+ + +
Sbjct: 68 HYLGLALPAAMCVSVFSVIRRMSQNHEIDALMASGVSMFRIARPFIVVGAILGVLSFSLY 127
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I + +G + + + P D+ + A+K+
Sbjct: 128 GFIQPYARYNYRSALYFASHSGW---APHLQSHMFAAPSHDLMLTAEKVDDAGSRMFKV- 183
Query: 181 SITIDKKNKIIHRKDADLAIIY----NDKVKL--------KKVVEYQYGRIPIDKNSTTL 228
I + + + A +Y DK++L + I D +
Sbjct: 184 FIRDNSNHDLTRYITARKGYLYIPNDEDKIRLDLIDGTIITDRHDKSPSVIHFDHTTELF 243
Query: 229 NIPIKMDGFQKFSE------QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI-- 280
+ ++D + + + Y I+ I H+Y + +F +
Sbjct: 244 SPHAQLDKLKAYRTRGQTERELTLPELYRGIRH----GMPGIKHSY-LVAELHFRLARTL 298
Query: 281 -----PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
PL+ A+ ++A RS I GF +T+ + S + +
Sbjct: 299 AIPFIPLLACALAVMAK----RQKRSLGLPIAAIA--LVGFD-HTL-QMGLSLVANVHMS 350
Query: 336 PVAAALIPVILTISLSILILL 356
P+ +P ++ + L+
Sbjct: 351 PLLVIWLPTLVFGIGCVWALI 371
>gi|70728449|ref|YP_258198.1| YjgP/YjgQ family permease [Pseudomonas fluorescens Pf-5]
gi|68342748|gb|AAY90354.1| permease, YjgP/YjgQ family [Pseudomonas fluorescens Pf-5]
Length = 372
Score = 87.6 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 50/354 (14%), Positives = 112/354 (31%), Gaps = 34/354 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q ++ R+P +
Sbjct: 2 IVFRYLSREILLTLSAVSAVLLVIIMSGRFVKFLAQAAS-GALDPGSLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL ++ + L+ + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMIPAALVALLVAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS-- 181
A G L+ + + + + +++ +
Sbjct: 121 APQGANQFQLLLNKQDALTEFDTLVAGRF--QALNDGTRVTYTEQLSEDRTNLGGVFISE 178
Query: 182 -------------ITIDKKNKIIHRKDA-DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT 227
+ + +K R D I+ N E Y I D
Sbjct: 179 KRLGQQKKDEGISVLVAEKGHQDIRPDGNRYLILENGYRYDGNPGEANYRVIKYDTYGVL 238
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
L P D + ++I K + RA + + + +PL++ +
Sbjct: 239 LERPDVSDEVTDRDAMPTA----DLIGK----------DDLRARAELQWRLSLPLLVFIV 284
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
TL+A +S + + + I TI+ ++ + G + P
Sbjct: 285 TLMAVPLS-RVNPRQGRFLKLIPAILLYMAYLTILIAVRGALEKGKISPALGLW 337
>gi|269103492|ref|ZP_06156189.1| putative permease [Photobacterium damselae subsp. damselae CIP
102761]
gi|268163390|gb|EEZ41886.1| putative permease [Photobacterium damselae subsp. damselae CIP
102761]
Length = 366
Score = 87.2 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/357 (13%), Positives = 119/357 (33%), Gaps = 17/357 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L ++ I + + L +P +
Sbjct: 2 IIVRYLTRETLKSQFAVLFVLFLVFISQKFIRILADATD-GSIPSDLITTLMGLYMPSMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A G+ LL + +++ G +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGMGNKFLLRAALSLALITGALATFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ K + + + P + I + +
Sbjct: 121 SPWAAEKEAQVMESVKADSGLDLLVKGQF--QAAPNGQGVVFVNDITDKGKTLKHVFVAQ 178
Query: 184 IDKKNKII-HRKDADLA---IIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ K+ I AD + + + LK Y+ +D + T + G
Sbjct: 179 LKGKDSIRPSVLVADHGYVSEHKDGRQILDLKDGTRYEGIPTRLDYSITDFEGYQAVIGQ 238
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+K E+ R ++ + + ++ + + ++ IPL+ M ++ +S
Sbjct: 239 RKVKEE---RRDWDAMPTLELMQRAEPEAQAEFQWRMSLILCIPLL--TMVVV--PLSAV 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + +V + + I+ KS + G L P+ ++ + + + +
Sbjct: 292 NPRQGRFAKLV-PAVLIYLAYFLAISAGKSALEDGTLPPMIGLWSINLVILLIGVAL 347
>gi|254780008|ref|YP_003058115.1| putative permease; putative membrane protein [Helicobacter pylori
B38]
gi|254001921|emb|CAX30174.1| Putative permease; putative membrane protein [Helicobacter pylori
B38]
Length = 355
Score = 87.2 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 132/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYISFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L Y+ + N+T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTRLETFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALMRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P + ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLW 346
>gi|317181181|dbj|BAJ58967.1| hypothetical protein HPF32_1385 [Helicobacter pylori F32]
Length = 355
Score = 87.2 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 132/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEY----QYGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L Y ++ N+T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTTIYEMPLKFELGANALNTTHLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALVRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P ++ ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFLVFLALSLW 346
>gi|208435366|ref|YP_002267032.1| hypothetical protein HPG27_1421 [Helicobacter pylori G27]
gi|208433295|gb|ACI28166.1| hypothetical protein HPG27_1421 [Helicobacter pylori G27]
Length = 355
Score = 87.2 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 131/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L Y+ + N+T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTTIYEMPSSFELGNNALNTTRLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALVRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P + ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLW 346
>gi|258542689|ref|YP_003188122.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
gi|256633767|dbj|BAH99742.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
gi|256636826|dbj|BAI02795.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
gi|256639879|dbj|BAI05841.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
gi|256642935|dbj|BAI08890.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
gi|256645990|dbj|BAI11938.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
gi|256649043|dbj|BAI14984.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
gi|256652030|dbj|BAI17964.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655087|dbj|BAI21014.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
Length = 399
Score = 87.2 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 67/370 (18%), Positives = 133/370 (35%), Gaps = 24/370 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
PG L RY + L L MI + + L + N + N+ +LAA +P
Sbjct: 20 PGTLDRYLIAQVMPPFLVALSVVMIALILERLLVLFNLLAAGNNHIGIFIGLLAAL-LPH 78
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP V V +++ E+ + G+S+ ++ P++ ++LG+ + L+
Sbjct: 79 YLGLAIPAALCVAVFTVIRRMSQNEEIDAINSSGLSLLRITRPYIQLGVILGVLSFLLYG 138
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I G + + ++P + I A K+ E+
Sbjct: 139 FIQPHARYDFRSTFYIASHTGWAPRLQPRMF---ASPSSQLTIVADKVSQSGSDLENVFI 195
Query: 182 ITIDKKNKIIHRKDADLAIIYND------KVKLKKVVEYQ------YGRIPIDKNSTTLN 229
+ ++ + A I ++ L V + D ++ L
Sbjct: 196 RDLSEQQE--RDITARNGHIRIGSDGETVEIDLTNGVIVTDKGDGVPSLVTFDHSTRYLT 253
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ F+ E + E++ ++ + S + R+E F + L + M L
Sbjct: 254 HASHISPFRTRGEDERELTSPELVGRLIRHDPSISRPHMRSEVHF--RMARSLTVPFMPL 311
Query: 290 IAASVS-LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+AAS++ + + N + +A+ I GF II S + + P ++ I
Sbjct: 312 LAASLALMRKRQRNNAGLPLAFIIMVGFDH--IIQFGHSMVATKKASLLL-IWGPAVVFI 368
Query: 349 SLSILILLQK 358
L+LL K
Sbjct: 369 VGCTLLLLYK 378
>gi|317014913|gb|ADU82349.1| hypothetical protein HPGAM_07880 [Helicobacter pylori Gambia94/24]
Length = 355
Score = 87.2 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 60/359 (16%), Positives = 129/359 (35%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+LNP S+ V +
Sbjct: 59 YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKRQILNPIFFISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L Y+ + N+T L + F+
Sbjct: 171 -KDRTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTRLETFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A + + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALFSLHALVRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P L ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLW 346
>gi|108563840|ref|YP_628156.1| hypothetical protein HPAG1_1415 [Helicobacter pylori HPAG1]
gi|107837613|gb|ABF85482.1| hypothetical protein HPAG1_1415 [Helicobacter pylori HPAG1]
Length = 355
Score = 87.2 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 132/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYISFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEY----QYGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L Y ++ N+T L + F+
Sbjct: 171 -KDRTLESYAEAKEAFFEDKYWILHDTTIYEMPLKFELGTNALNATRLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALVRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P + ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSLW 346
>gi|121602513|ref|YP_988823.1| YjgP/YjgQ permease [Bartonella bacilliformis KC583]
gi|120614690|gb|ABM45291.1| putative permease, YjgP/YjgQ family [Bartonella bacilliformis
KC583]
Length = 396
Score = 87.2 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 48/332 (14%), Positives = 114/332 (34%), Gaps = 21/332 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y K + + +++ + + N + + ++ +P +I
Sbjct: 3 ILELYILKRIFILFSAVITATVCIIWTVQILARINFLTT-SGQTFLTALYFSSLLIPSVI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IPF ++ I +N+ SEL I A GI + P + +IL + + N +
Sbjct: 62 SLVIPFALMIAIITTLSRMNQDSELTIISASGIPKTTIWKPILFLAILASCASFFITNFV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A +++ + + +++N +++IG + P+ I F +
Sbjct: 122 APQARLHMREMLASAHSDLINLFIHEGSFQKLTN---NLYIGIGERYPDGTIGRLFIADQ 178
Query: 184 IDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIP-----IDKNSTTLNIPIKM 234
D K +++ A I + + L + I +S T N+ +
Sbjct: 179 RDPKIDLLY--YATKGAIVSNKSGNILVLNNGEIKRLNHQNDSVSIIKFSSYTFNLSEFI 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + R + + + + + + +F+ + L + LIA +
Sbjct: 237 PNDRIPTIYPKDRPL-SYLYRPDPDDPNYQRQPLQYKAEFHRRLTEWLYPIVFALIAVAA 295
Query: 295 -----SLEFSRSNQPRIIVAYGIFSGFMLYTI 321
S +R + + + + + Y
Sbjct: 296 AGDARSYRQARISTTFFAIIFSLLIYLVRYFF 327
>gi|88800547|ref|ZP_01116109.1| hypothetical protein MED297_15285 [Reinekea sp. MED297]
gi|88776692|gb|EAR07905.1| hypothetical protein MED297_15285 [Reinekea sp. MED297]
Length = 353
Score = 87.2 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 48/363 (13%), Positives = 124/363 (34%), Gaps = 29/363 (7%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDL-NEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
Y K LL L+FV + +E +M + Y++ + + + + +
Sbjct: 7 YLVKQTSLMVSIVLLAIAGLLFVTGIADEAARRMTD--TYTLQSAVIYKFSTLSAEVYEY 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
I I ++ ++ + N+ EL I + S LL ++ +++L + A S
Sbjct: 65 IGVIVMLGTLITVASFNKHQELTIIQLSAASAPALLLRLLLPALILLPIVYGIGEFAAPS 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ + G+K + W + +N ++ + + T ++
Sbjct: 125 WQNNAEQARALLR--GEKNPTLRGQWYKANNEYVNV-----EFISNETELTGITRFQMNP 177
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVE-------YQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ +++ + A+ + L +E ++ + I + P +
Sbjct: 178 QKQLMAASYSKRAVYSDGSWVLINTIEVKRTERGFERKTMGISSWENAVFTPELVRNLAL 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
S + ++ + + E + ++ PL + + +A + +
Sbjct: 238 ESSNLTLPELWTQVRFRAEAGTL----TPALERTLWNRVLFPLQYIGLMFVALAFAFGSF 293
Query: 300 R----SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + G+ SG ++ T+ + + AA L+ L L+ +L
Sbjct: 294 RQKTIGDAAFKALVLGVISGLLIDTLSASLMVL----AMPAFAAVLVSNSLFTGLAFYLL 349
Query: 356 LQK 358
++
Sbjct: 350 KRR 352
>gi|15612456|ref|NP_224109.1| hypothetical protein jhp1391 [Helicobacter pylori J99]
gi|4156011|gb|AAD06972.1| putative [Helicobacter pylori J99]
Length = 355
Score = 87.2 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 131/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L Y+ + N+T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTHLETFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALVRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P + ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLW 346
>gi|124006213|ref|ZP_01691048.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
gi|123988137|gb|EAY27795.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
Length = 491
Score = 86.8 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 6/197 (3%)
Query: 9 FFKYYLKTTLY-FLLGAMILVFVIDLNEIQNQMGELPNYSISRG--AVLAATRVPLIIQQ 65
K L++ F+L +LVF+ + ++ + E +S A L II
Sbjct: 4 IDKLVLQSFFGPFILTLSVLVFIFLVQQLLQYLDEFMGKGLSYLVFAELVFYFSLHIIPM 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P TL+ +++ F NL EL ++ GIS+ ++L P + + + + N I
Sbjct: 64 VLPLATLLASLITFGNLGEHHELTAMKSSGISLIRVLTPLFMVVVCFAVVSFWFNNSIVP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
L+ + + + I P+ +D
Sbjct: 124 KANLDAYSLLYDIRQTKPALDIKEGAFY---GGIPNYSIKVNHKFPDGRTLKDVIIYDHS 180
Query: 186 KKNKIIHRKDADLAIIY 202
+ AD +Y
Sbjct: 181 GRRGNKQVILADSGQMY 197
>gi|170723397|ref|YP_001751085.1| permease YjgP/YjgQ family protein [Pseudomonas putida W619]
gi|169761400|gb|ACA74716.1| permease YjgP/YjgQ family protein [Pseudomonas putida W619]
Length = 371
Score = 86.8 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 45/348 (12%), Positives = 116/348 (33%), Gaps = 21/348 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + S ++ R+P +
Sbjct: 2 IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQ-GVLDPSVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+ + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGLTMAPAALVALLVAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF--TS 181
A G +I Q + + ++P + +++ + +
Sbjct: 121 APLGVAQVQQIIGQQ--DALTEFDTLVPGRFQTLRDGSRVTYTEELTDDRSNLTGVFISE 178
Query: 182 ITIDKK---NKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
++ ++ A+ N + L+ Y D + +
Sbjct: 179 KRFNQDKTKDRAPSVLVAEKGHQEVQADGNRYLVLQNGYRYDGNPGQADYRAIKYDTYGV 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + SE+ R + + + R + + I +P+++ +TL+A
Sbjct: 239 LLPKPEVSEEVTEREAIPTSQLIGNAG-------LRERAELQWRISLPILVFIVTLLAVP 291
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+S + + + I T++ ++ + G L
Sbjct: 292 LS-RVNPRQGRFLKLLPAILLYMAYLTMLISVRGALEKGKLPIALGMW 338
>gi|88803032|ref|ZP_01118559.1| putative permease [Polaribacter irgensii 23-P]
gi|88781890|gb|EAR13068.1| putative permease [Polaribacter irgensii 23-P]
Length = 482
Score = 86.8 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 36/199 (18%), Positives = 69/199 (34%), Gaps = 3/199 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL +Y K +L L L + ++ + L + + S S I
Sbjct: 2 KILDKYILKTFLGPFLATFLIVLFVLVMQLLWQTFENIAGK-GISFSFILKFLYYTSLSI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ Q +P L+ +I+ +L E +++ GIS+ +L+ P + ++LL L +N
Sbjct: 61 VPQAMPIAVLLSSIMALGSLGENYEFAAAKSSGISLQRLVRPLIFLTLLLSGINFLFLNN 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I +L K +IP S+ +K E ++ ++
Sbjct: 121 IFPYAILKQQNLYYNIKKKKPALA--LIPGSFNSDLPGYQIKFDEKYGEEKNLLKNVLIY 178
Query: 183 TIDKKNKIIHRKDADLAII 201
+ A I
Sbjct: 179 DLSSSKGNQKIITAKRGKI 197
Score = 46.0 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 273 QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG 332
++Y I + + + I A + R + + I + T+ K+ +
Sbjct: 369 EYYGRIALSFSCLILFFIGAPLG-SIIRKGGFGLPMILAIAIYVTYFFGNTMGKNLAEES 427
Query: 333 ILLPVAAALIPVILTISLSILI 354
+ V + I ++ I I +
Sbjct: 428 SISAVLGSWISAMVMIPFGIFL 449
>gi|218710648|ref|YP_002418269.1| hypothetical protein VS_2728 [Vibrio splendidus LGP32]
gi|218323667|emb|CAV19979.1| hypothetical permease [Vibrio splendidus LGP32]
Length = 368
Score = 86.8 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 39/363 (10%), Positives = 114/363 (31%), Gaps = 27/363 (7%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I+ RY + +K+ ++ + + + S + +P
Sbjct: 1 MSVIIVRYLIRETIKSQFAIFFVLFLVFLSQKFISVLADASD-GDIPASLVLSIVGLNMP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++P + ++ F L SE+V+ A GI L+ + +++
Sbjct: 60 AMGLLMLPLSIYIGILLTFGRLYAESEIVVMNATGIGNKFLIQSALYLALITATVAAFNS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ + + ++ + + P + + I + + ++
Sbjct: 120 FWLSPWSQDKVEQMYEEVAAENSVDLLPKGKFAR--TPDGSSVVFIEGI--DGNQLDNVF 175
Query: 181 SITIDKKNKIIHRK----DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ ++ ++ D+ + + ++V+ G + ++
Sbjct: 176 VSQMRPRDSVLPSVMFSKSGDVKELSDG----RQVIVMYDG---TRHEGVPSRLDYRVTH 228
Query: 237 FQKFSEQFASRSF------YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
F+++ R +E I + + + + ++ IPL+ T++
Sbjct: 229 FEEYEGLIGQREVEKKGREWEAIPTIDLIGNQDNRAKAELQWRMSLVLCIPLL----TML 284
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+S R + + I + I+ KS + G + L + +
Sbjct: 285 VVPLSAVNPRQGRFAK-IGPAILIYLTYFLAISATKSSIEEGDIPAAIGMWPINALLLFV 343
Query: 351 SIL 353
+I
Sbjct: 344 AIG 346
>gi|207091759|ref|ZP_03239546.1| hypothetical protein HpylHP_01146 [Helicobacter pylori
HPKX_438_AG0C1]
Length = 355
Score = 86.8 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 132/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYISFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEY----QYGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L Y ++ N+T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTTIYEMPLKFELGANALNATRLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALMRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P + ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSLW 346
>gi|308185268|ref|YP_003929401.1| hypothetical protein HPSJM_07640 [Helicobacter pylori SJM180]
gi|308061188|gb|ADO03084.1| hypothetical protein HPSJM_07640 [Helicobacter pylori SJM180]
Length = 355
Score = 86.4 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 131/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+LNP + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKCQILNPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L Y+ + ++T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALVRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P + ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLW 346
>gi|149190546|ref|ZP_01868816.1| hypothetical protein VSAK1_13861 [Vibrio shilonii AK1]
gi|148835670|gb|EDL52637.1| hypothetical protein VSAK1_13861 [Vibrio shilonii AK1]
Length = 371
Score = 86.4 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 125/354 (35%), Gaps = 20/354 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ L L ++ F ++ + + LA +P +
Sbjct: 2 IIVRYLIRETVKSQLAIFLVLFLVFFSRQFIQVLADASD-GDIPAGLIMTLAGISMPTMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P + +V F L SE+ + A GI L+ + ++L +
Sbjct: 61 LLMFPLSIYIGILVTFGRLYAESEITVMNATGIGNKFLIRAAMYLAVLTTSLAAFNAFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A ++ + + ++ + + + + +FI ++ +
Sbjct: 121 APWTQEQEVQIRERLASENSVELLQTGSFQRTPDGSSVVFI----DSIKDKKLTNVFVAQ 176
Query: 184 IDKKNKII-HRKDADLA---IIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
++ ++ ++ A + + + + L V Y+ ++ T + G
Sbjct: 177 LNPRDSVLPSVISAKSGDVKELSDGRQVIALYDGVRYEGVPTRLEYMVTEFTDYEGVIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ ++ S ++ + + +A+ + ++ I + + + +T++ +S
Sbjct: 237 REVQQRGRSWMAIPTMELL-------GNPDPKAQAELHWRISLVVCIPLLTMLVVPLSAV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
R ++ + I + F + I+ MKS + G PV + L+
Sbjct: 290 NPRQSKFAKM-GPAILAYFAYFMAISAMKSALEDGAFPSYIGLW-PVNFALLLA 341
>gi|46446270|ref|YP_007635.1| hypothetical protein pc0636 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399911|emb|CAF23360.1| hypothetical protein pc0636 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 360
Score = 86.4 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 66/356 (18%), Positives = 124/356 (34%), Gaps = 18/356 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSIS----RGAVLAATRV 59
I RYF ++K L FL+ L +ID + LP++ I +
Sbjct: 5 IWERYFVSEFIKVFLLFLVCFYGLYVLIDY---ASHTSALPHHHIQLRIRELIRYYLFIL 61
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
+ +IP L+ I LN ELV A GI + L+ PF++ ++ L
Sbjct: 62 ASRAEILIPLALLIAFIKTVCTLNTHQELVALMAGGIKLKTLMRPFLMIALAFVCLLYLN 121
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ S K L K +Q +I + + + + + E + D
Sbjct: 122 EQFVLPSTLKKLRHLENATKHQKKRQLPEITV-KHVVLEDRSLLLY-QNYDSEKEEFFDV 179
Query: 180 TSI-TIDKKNKIIHR---KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
I +ID + + K+ + + ++ Q + L +
Sbjct: 180 YWIESIDSIYRAKYLCPNKEIPVGYFVDHLLRQPNGELLQQQAYSQYEFKNLLFNQELLQ 239
Query: 236 GFQKFSE-QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + F++ + ++ + T FY+ +++P + + L A
Sbjct: 240 SAILDPDILPLTNLFFQQPSLFANLSEKE----SKIATAFYWKLLMPWLCLLAILAPAPS 295
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ FSR I Y +F Y ++ + K +L P+ A +P IL S
Sbjct: 296 CVRFSRQIPIFFIYIYSLFGLIAFYMLMDAAQVLAKRQVLPPIWAIGLPFILVFSF 351
>gi|210135665|ref|YP_002302104.1| hypothetical protein HPP12_1476 [Helicobacter pylori P12]
gi|210133633|gb|ACJ08624.1| hypothetical protein HPP12_1476 [Helicobacter pylori P12]
Length = 355
Score = 86.4 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 57/359 (15%), Positives = 131/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L Y+ + ++T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALVRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P + ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSLW 346
>gi|188528269|ref|YP_001910956.1| hypothetical protein HPSH_07675 [Helicobacter pylori Shi470]
gi|188144509|gb|ACD48926.1| hypothetical protein HPSH_07675 [Helicobacter pylori Shi470]
gi|308062762|gb|ADO04650.1| hypothetical protein HPCU_07550 [Helicobacter pylori Cuz20]
Length = 355
Score = 86.4 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 131/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L Y+ + N+T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTRLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALMRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P L ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLW 346
>gi|317010128|gb|ADU80708.1| hypothetical protein HPIN_07620 [Helicobacter pylori India7]
Length = 355
Score = 86.4 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 57/359 (15%), Positives = 131/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L Y+ + ++T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALVRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P + ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLW 346
>gi|297380647|gb|ADI35534.1| Hypothetical protein HPV225_1517 [Helicobacter pylori v225d]
gi|308064258|gb|ADO06145.1| hypothetical protein HPSAT_07215 [Helicobacter pylori Sat464]
Length = 355
Score = 86.4 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 131/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTTVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L Y+ + N+T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALNTTRLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALMRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P L ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLW 346
>gi|87198521|ref|YP_495778.1| permease YjgP/YjgQ [Novosphingobium aromaticivorans DSM 12444]
gi|87134202|gb|ABD24944.1| permease YjgP/YjgQ [Novosphingobium aromaticivorans DSM 12444]
Length = 414
Score = 86.4 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 52/364 (14%), Positives = 121/364 (33%), Gaps = 24/364 (6%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + L + A L+ + + ++ + + +S + A +P
Sbjct: 8 DRYIARLVFVPMLSVFVLAASLLILDKMLKLFDFVATQGG-PVSVVFKMLANLLPEYASL 66
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
IP ++ + F L +SEL + RA+G+S +LL + +I L +L+++ +
Sbjct: 67 AIPLGLMLGILFAFRKLAMSSELDVMRAVGLSYTRLLRVPYMFAIALAALNLLIVSYLQP 126
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
L + + + + ++ Q + E I
Sbjct: 127 LSRYYYEQLQFELRSGALGASIRVGEF---NSLQDRTALRVDASRDEGRDLRGI-FARIQ 182
Query: 186 KKNKIIHRKDADLAIIYNDK-------VKLKKVVEYQYG---RIPIDKNSTTLNIPIKMD 235
N + A + ++ ++L Q G P + + ++PI +
Sbjct: 183 TANGQVMVISAREGRFFANRESPDTVILRLTDGQIVQDGPGIASPRVLSFASHDLPIDLP 242
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL--IVIPLMLVAMTL---I 290
++F ++ + Y + + + Y E + + L+ V M +
Sbjct: 243 RIEQFRQRGDADREYFLPELLQI----GWNDRYSEEIRNQSKASLNYRLVEVVMMFLLPL 298
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A + + + V I + + + G + PV A P ++ +L
Sbjct: 299 LAVALAVPPKRSTSALGVFLSIVLVVAYHKVNQYGQDVAALGRMDPVIALWGPFVVFAAL 358
Query: 351 SILI 354
+ +
Sbjct: 359 IVWM 362
>gi|332674268|gb|AEE71085.1| conserved hypothetical protein [Helicobacter pylori 83]
Length = 355
Score = 86.4 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 129/359 (35%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI----------PIKM 234
K + +A A + L Y+ + + + LN +
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTTIYEM-PLSFELGNNALNTTHLKTFKTLKNFRP 228
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + S + + + + N + + Y ++P + ++++ A
Sbjct: 229 KVLDTIYQNKPAVSITDALLSLHALMRQNA-DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P L ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLW 346
>gi|115379870|ref|ZP_01466933.1| permease YjgP/YjgQ, putative [Stigmatella aurantiaca DW4/3-1]
gi|115363129|gb|EAU62301.1| permease YjgP/YjgQ, putative [Stigmatella aurantiaca DW4/3-1]
Length = 342
Score = 86.4 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 45/331 (13%), Positives = 119/331 (35%), Gaps = 30/331 (9%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+++ L P + + +P L+ ++ L+ EL +A+GIS QLL
Sbjct: 13 SAVTLTDIGRLILYLTPHFLVKALPIAFLMAILLGLGRLSEDRELTALQALGISPVQLLL 72
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
+ +LL L+ G +L+ + + + + D+
Sbjct: 73 GPMAIGLLLAGLMALLAFTAQPWGLTSVKELVNEVIKKNVAGDVKSGVFYEDLS---DLT 129
Query: 164 IGAKKILPENHIWEDFT----------SITIDKKNKIIHRK--DADLAIIYNDKVKLKKV 211
+ A+++ E W + + ++ ++ R+ +A ++ ++ +
Sbjct: 130 LYAERVSREGGEWTHVLLHDDREPSSPLLVLAQRGRVSMREGDEALRLVLEEG--EVHRA 187
Query: 212 VEYQYGRIPIDKNSTTLNI------PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF 265
+ +++ K + F+ E+ + E+I+ + KS
Sbjct: 188 TRSTADYSLLRFEQGEISVGLGGSMNRKSNRFRSQKEEMSP---GELIQAAEEAEKSGG- 243
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF-MLYTIITI 324
+ + + + ++ L+ +++ ++ + + SG+ + Y + +
Sbjct: 244 NPRPFLMAIHMRLGNAVAPLSFALLGTPLAIGRKQAGRAWGYLLT--LSGYVLFYVLSRV 301
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ G L V AA +P IL L ++ +
Sbjct: 302 FETLGNQEKLPMVLAAQLPNILFSVLGVVAM 332
>gi|308183601|ref|YP_003927728.1| hypothetical protein HPPC_07350 [Helicobacter pylori PeCan4]
gi|308065786|gb|ADO07678.1| hypothetical protein HPPC_07350 [Helicobacter pylori PeCan4]
Length = 355
Score = 86.4 bits (213), Expect = 7e-15, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 131/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L Y+ + N+T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFKDKYWILHDTTIYEMPLSFELGNNALNTTRLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALMRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P L ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLW 346
>gi|313203466|ref|YP_004042123.1| permease yjgp/yjgq family protein [Paludibacter propionicigenes
WB4]
gi|312442782|gb|ADQ79138.1| permease YjgP/YjgQ family protein [Paludibacter propionicigenes
WB4]
Length = 493
Score = 86.4 bits (213), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 71/207 (34%), Gaps = 18/207 (8%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLN-----EIQNQMGELPNYSISRGAV 53
M I + Y FK ++ L L I + ++ E+ + S A
Sbjct: 1 MFRIKKIDSYIFKRFITQFLMTFL-ICIFILLMQFLWKHVSELIGK-----GVGWSVLAE 54
Query: 54 LAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG 113
+ ++ +P L+ +++ F NL EL +A GIS+++++ P ++ +
Sbjct: 55 FFIYAIFSVVPMALPLAILLASLMTFGNLGENFELTAMKAAGISLFRIIRPLIIFISFVC 114
Query: 114 IFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
+ N + + L+ K + + P I++ KK +
Sbjct: 115 VGAFFFSNYVLPVAQTKLYTLVISLKQKSPELDIPTGEFYS-GIPNVQIYVKDKK----D 169
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAI 200
HI ++ + AD
Sbjct: 170 HILKNVMIYNFSGGFENAEVTVADSGK 196
Score = 44.1 bits (103), Expect = 0.030, Method: Composition-based stats.
Identities = 12/93 (12%), Positives = 29/93 (31%), Gaps = 1/93 (1%)
Query: 262 SNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTI 321
S + + + E + + + + I A + R + V + + Y I
Sbjct: 361 SQVTYITKHEIERHRKFTLSFACLIFFFIGAPLGA-IIRKGGLGMPVVISVIMFIIYYII 419
Query: 322 ITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
K G+ L + + + + I +
Sbjct: 420 DNTGYKMVKEGLWLSYQGMWLSSFVLLPIGIFL 452
>gi|258625833|ref|ZP_05720712.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258582071|gb|EEW06941.1| conserved hypothetical protein [Vibrio mimicus VM603]
Length = 366
Score = 86.4 bits (213), Expect = 7e-15, Method: Composition-based stats.
Identities = 46/357 (12%), Positives = 120/357 (33%), Gaps = 20/357 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L++Q+ + + + +FI EN +
Sbjct: 121 SPWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFI----DNIENRKLHNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ I+ D+ + + + + L Y+ +D T + + G
Sbjct: 177 LAPRDSILPSVMFSNSGDVKELSDGRQIITLYNGTRYEGVPTRVDYMITNFDSYDGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ +S +E + +S S++ + + ++ IPL+ T++ +S
Sbjct: 237 REVK---SSDRDWEALPTLSLLKNSDLQAQAELQWRLSLVVCIPLL----TMLVVPLSAV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + I + ++ KS + G L + PV + ++ L+
Sbjct: 290 NPRQGRFAKM-GPAILIYLTYFLALSATKSAIEDGSLPVIIGLW-PVNAALLIAALV 344
>gi|323496138|ref|ZP_08101198.1| hypothetical protein VISI1226_19659 [Vibrio sinaloensis DSM 21326]
gi|323318882|gb|EGA71833.1| hypothetical protein VISI1226_19659 [Vibrio sinaloensis DSM 21326]
Length = 366
Score = 86.1 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 39/355 (10%), Positives = 117/355 (32%), Gaps = 22/355 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L +++ ++ + + + +P +
Sbjct: 2 IIVRYLIRETLKSQLAIFFVLLLVFISQTFIKVLGDATD-GDIPARLILAIVGLNIPQMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A G+ L+ + + + +
Sbjct: 61 LLMLPMSLYLGILLTFGRLYSESEITVMNATGMGSKFLIRAAMSLAFITTALAAFNTLYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A ++ LI+Q + + + +FI +++ +
Sbjct: 121 APWSQEREAQLIEQVAAESSVDLLKAGQFQRTPDGSSVVFI----DSIKDNQLNNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ I+ ++ + + + + Y+ +D T + G
Sbjct: 177 LRPRDAILPSVMFSNSGEVKEHSDGRQMIVMHDGTRYEGIPTRLDYMVTEFEQYSGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV-AMTLIAASVSL 296
++ + + + S+ S + + + I + + + +T++ +S
Sbjct: 237 REVEAKRRGWGAVPTLDLIESSDLSA-------KAELQWRISL-FVCIPLLTMLVVPLSA 288
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
R + + I + F+ + I+ KS + G + P+ + ++
Sbjct: 289 VNPRQGRFAKM-GPAILAYFVYFISISTTKSAIEDGNIPAAIGMW-PINFALLVA 341
>gi|146313281|ref|YP_001178355.1| permease YjgP/YjgQ family protein [Enterobacter sp. 638]
gi|145320157|gb|ABP62304.1| permease YjgP/YjgQ family protein [Enterobacter sp. 638]
Length = 366
Score = 86.1 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 55/357 (15%), Positives = 122/357 (34%), Gaps = 19/357 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + K N + + + + + + D
Sbjct: 121 GPWSSKHQDEVLAEAKANPGMAALAQGQF--QQASDGSSVLFIESV--DGSRFNDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
I K AD + + V L K ++ + D T + G
Sbjct: 177 IRTKGNARPSVVVADSGQLAQRKDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAVVGH 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q + ++ ++ RA + ++ + + + M L+ +S+
Sbjct: 237 QNVALDPTDTEQMDMRTLIN-------TDTNRARAELHWRLTLVFTVFMMALMVVPLSVV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + T +KS G G + P+ L + L++++
Sbjct: 290 NPRQGRV-LSMLPAMLLYLVYFLLQTSIKSNGGKGKIDPMIWTWAVNGLYLLLAVVL 345
>gi|315585885|gb|ADU40266.1| conserved hypothetical protein [Helicobacter pylori 35A]
Length = 355
Score = 86.1 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 133/359 (37%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ + V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTVVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L + Y+ + N+T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTIIYEMPLSFELGNNALNATHLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALMRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P L ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLW 346
>gi|15646107|ref|NP_208289.1| hypothetical protein HP1498 [Helicobacter pylori 26695]
gi|2314682|gb|AAD08544.1| predicted coding region HP1498 [Helicobacter pylori 26695]
Length = 355
Score = 86.1 bits (212), Expect = 9e-15, Method: Composition-based stats.
Identities = 57/359 (15%), Positives = 131/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAIYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L Y+ + ++T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALVRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P + ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALSLW 346
>gi|86147550|ref|ZP_01065860.1| putative permease [Vibrio sp. MED222]
gi|85834589|gb|EAQ52737.1| putative permease [Vibrio sp. MED222]
Length = 366
Score = 86.1 bits (212), Expect = 9e-15, Method: Composition-based stats.
Identities = 38/360 (10%), Positives = 113/360 (31%), Gaps = 27/360 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFISVLADASD-GDIPASLVLSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +++ +
Sbjct: 61 LLMLPLSIYIGILLTFGRLYAESEIVVMNATGIGNKFLIQSALYLALITATVAAFNSFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + ++ + + P + + I + + ++
Sbjct: 121 SPWSQDKVEQMYEEVAAENSVDLLPKGKFAR--TPDGSSVVFIEGI--DGNQLDNVFVSQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ ++ ++ D+ + + ++V+ G + ++ F++
Sbjct: 177 MRPRDSVLPSVMFSKSGDVKELSDG----RQVIVMYDG---TRHEGVPSRLDYRVTHFEE 229
Query: 240 FSEQFASRSF------YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ R +E I + + + + ++ IPL+ T++
Sbjct: 230 YEGLIGQREVEKKGREWEAIPTIDLIGNQDNRAKAELQWRMSLVLCIPLL----TMLVVP 285
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S R + + I + I+ KS + G + L + ++I
Sbjct: 286 LSAVNPRQGRFAK-IGPAILIYLTYFLAISATKSSIEEGDIPAAIGMWPINALLLFVAIG 344
>gi|300718541|ref|YP_003743344.1| permease [Erwinia billingiae Eb661]
gi|299064377|emb|CAX61497.1| putative permease [Erwinia billingiae Eb661]
Length = 366
Score = 85.7 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 52/357 (14%), Positives = 123/357 (34%), Gaps = 19/357 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLTLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V + I + + +
Sbjct: 61 QLILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMVLMLFTAIVAAVNVAWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ Q K N + + + + + + + + +
Sbjct: 121 GPWSSRYQSEVTQNAKANPGAAALAAGQF--QQSGDGQSVMFIENV--KGNNFGNVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYND-----KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ K AD + V L K ++ + D T + G
Sbjct: 177 LRPKGNARPSVVLADKGHMTQGPDGSQIVTLDKGTRFEGTAMLRDFRITDFENYQAIVGH 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q + K ++ S+K +F++ + + ++ M L+ +S+
Sbjct: 237 QDVVLDPNDAEQMDF-KTLAQSDKPEFRS------EFHWRLTLVFSVLVMALMVVPLSVV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + + ++S G+ L P + + + L++L+
Sbjct: 290 NPRQGRV-LSMLPAMLLYLIFFLLQSSLRSSGQKARLDPALWMWVVNLSYLGLAVLL 345
>gi|317182703|dbj|BAJ60487.1| hypothetical protein HPF57_1413 [Helicobacter pylori F57]
Length = 355
Score = 85.7 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 132/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTTVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L + Y+ + N+T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTIIYEMPLSFELGNNALNTTHLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALVRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P + ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLW 346
>gi|253686792|ref|YP_003015982.1| permease YjgP/YjgQ family protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251753370|gb|ACT11446.1| permease YjgP/YjgQ family protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 371
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/353 (11%), Positives = 121/353 (34%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ L L +++ F L I + + L VP ++
Sbjct: 2 IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVISLLGLGVPEMV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ LL + ++ + + + +
Sbjct: 61 QLILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALALAVFTAVIATINVMWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + K N + S + + + +
Sbjct: 121 SPWSSRHQEEVLAEAKANPGMATLVEGQF--QSAQGGNAVLFVGNVKGSEFQHVFLAQLR 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ AD I ++ + + L ++ F +
Sbjct: 179 PSGNARPSVVV-ADRGHIKQNE---DGAQVVTLDNGSRYEGTALLR-DFRITDFTNYQAV 233
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRA--ETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+S + + ++H+ +F++ + + L ++ M L+ +S+ R
Sbjct: 234 IGHQSVTLNNSDVQQMDMQTLWHSDAHDARAEFHWRLTLILSVLIMALMVVPLSVVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + + ++S G + P+ + ++ +++++
Sbjct: 294 GRV-LSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWVWLTNLMYFGIAVML 345
>gi|317178203|dbj|BAJ55992.1| hypothetical protein HPF16_1395 [Helicobacter pylori F16]
Length = 355
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 132/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L + Y+ + N+T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTIIYEMPLSFELGNNALNATHLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALVRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P + ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLW 346
>gi|317011633|gb|ADU85380.1| putative permease; putative membrane protein [Helicobacter pylori
SouthAfrica7]
Length = 355
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 128/359 (35%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+LNP S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKRQILNPIFFISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI----------PIKM 234
K + +A A + L Y+ + + + LN +
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTTIYEM-PLSFELGANALNTMRLETFKTLKNFRP 228
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + S + + + + N + + Y ++P + ++++ A
Sbjct: 229 KVLDTIYQNKPAVSITDALFSLHALMRQNA-DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P L ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLW 346
>gi|291616051|ref|YP_003518793.1| YjgP [Pantoea ananatis LMG 20103]
gi|291151081|gb|ADD75665.1| YjgP [Pantoea ananatis LMG 20103]
Length = 366
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 50/354 (14%), Positives = 121/354 (34%), Gaps = 13/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEVPTNLVLTLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V + + + + +
Sbjct: 61 QLILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMVLMLFTSVVAAVNVIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + Q K N + ++ + + + + + +
Sbjct: 121 GPWSSRYQEQVTQNAKANPGAAALAAGQF--QTSSDGSAVLFLENV--KGNQFGHVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ K AD + K ++V G T L ++ F +
Sbjct: 177 LRPKGNARPSVVLADSGHMEQKK-DGSQIVTLDKG---TRFEGTALLRDFRITDFTNYQA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNY--RAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + + + N + ++ I + ++ M L+ +S+ R
Sbjct: 233 YVGYKQATLDPNDVDQATFATLLSNKTPEFRAELHWRITLVFAVLVMALMVVPLSVVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + + ++S G G L P + I ++L+I++
Sbjct: 293 QGRV-LSMLPAMLLYLIFFLLQSSLRSSGAKGRLDPAIWMWVVNISYLALAIVL 345
>gi|288937433|ref|YP_003441492.1| permease YjgP/YjgQ family protein [Klebsiella variicola At-22]
gi|288892142|gb|ADC60460.1| permease YjgP/YjgQ family protein [Klebsiella variicola At-22]
Length = 365
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 56/363 (15%), Positives = 126/363 (34%), Gaps = 31/363 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L +P +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPTNLVLSLLGLGIPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ G + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLIKAAMILALFTGAVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + + + + + + + D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQF--QQASDGNAVMFIESVN--GNRFHDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ K AD + + V L K ++ + D T N + G
Sbjct: 177 LRPKGNARPSVVVADSGELSQQKDGSQVVTLNKGTRFEGTAMLRDFRITDFNNYQAIIGH 236
Query: 238 QKF------SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
Q +EQ R+ ++ H RA + ++ + + M L+
Sbjct: 237 QAVTSDPDDTEQMDMRTLWQ-------------THTDRARAELHWRFTLVATVFIMALMV 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+S+ R + + + + + + + T +KS G G + P +L +L+
Sbjct: 284 VPLSVVNPRQGRV-LSMLPAMLLYLVFFLLQTSIKSNGGKGKMDPAIWMWAINLLYFALA 342
Query: 352 ILI 354
+L+
Sbjct: 343 VLL 345
>gi|262166531|ref|ZP_06034268.1| predicted permease [Vibrio mimicus VM223]
gi|262026247|gb|EEY44915.1| predicted permease [Vibrio mimicus VM223]
Length = 366
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/357 (12%), Positives = 120/357 (33%), Gaps = 20/357 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASIAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L++Q+ + + + +FI EN +
Sbjct: 121 SPWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFI----DNIENRKLHNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ I+ D+ + + + + L Y+ +D T + + G
Sbjct: 177 LAPRDSILPSVMFSNSGDVKELSDGRQIITLYNGTRYEGVPTRVDYMITNFDSYDGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ +S +E + +S S++ + + ++ IPL+ T++ +S
Sbjct: 237 REVK---SSGRDWEALPTLSLLKNSDLQAQAELQWRLSLVVCIPLL----TMLVVPLSAV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + I + ++ KS + G L + PV + ++ L+
Sbjct: 290 NPRQGRFAKM-GPAILIYLTYFLALSATKSAIEDGSLPVIVGLW-PVNAALLIAALV 344
>gi|326335584|ref|ZP_08201771.1| YjgP/YjgQ family permease [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325692350|gb|EGD34302.1| YjgP/YjgQ family permease [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 481
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/262 (13%), Positives = 79/262 (30%), Gaps = 7/262 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY ++ + L +++ + +++ SI A +P +
Sbjct: 2 KILDRYILSRFIFNFVSSFLIIILIFIFQTIWLYIDELAGK-GLSIFIIIKFVALMLPNL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I I+P ++ +I+ + EL +A G+S+ + ++ +LL I N
Sbjct: 61 IPLILPLTVVLSSIMTLGAFGESYELAAMKASGVSLLKGTRTLILFMLLLSIGVFFTFNN 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + L K+ + +N Q KK D
Sbjct: 121 LQPWSNRKAVALRDSIKNKQPSLAISQGIF---NNVQDFSIKVEKKTGENGEFLHDIVIH 177
Query: 183 TIDKKNKIIHRKDADLAIIYN---DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ A + L+ +++ + ++ + P FQ
Sbjct: 178 KLGVDGLSRTVIKAKEGELSGHKKGSNVLQLILKDGTYYEDVKSANSDITFPFVKAKFQV 237
Query: 240 FSEQFASRSFYEIIKKMSFSNK 261
+ S + +
Sbjct: 238 HTLNIDISSLNTEVSYDESGER 259
Score = 53.7 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 2/92 (2%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
F I + + + +AA + R + + I Y + K+
Sbjct: 369 YRLTFSDKIALAITCFVLFFVAAPLGA-IIRKGGIGMPLVVAIGLFLTYYFSGLLTKNMA 427
Query: 330 KSGILLPVAAALIPVILTISLSILI-LLQKED 360
+G + P A IP + L I + +L ED
Sbjct: 428 TNGNINPYIAPWIPTFFLLPLGIYLTILVNED 459
>gi|118581150|ref|YP_902400.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
gi|118503860|gb|ABL00343.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
Length = 367
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/327 (14%), Positives = 107/327 (32%), Gaps = 14/327 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + + +++ N S L + +V + +
Sbjct: 2 IIERYIVREICAPLVVICTVLIMIFSGFSAVRFLNDAVN-GLLSGGTVVALVSLKVLIAL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +IP + ++ L E+ A G+S +L++ + +ILL + +
Sbjct: 61 EVLIPVTLYLAIVLALSRLYADGEITAMEAGGLSQKKLISAVLFLAILLALMVTGLSLHA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
L + ++ D K + + ++ A+K+ P + +
Sbjct: 121 RPWAYGKMYLLETRGQNEFDIAKVEAG---RFYELSHNLVFFAEKLDPARNQARNVWVWE 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK-MDGFQKFSE 242
+ + A A N + +K + +Q G S L + GFQ+
Sbjct: 178 FGPEKR--RVTSARSAFQTNGPGEGQKAIVFQEG----SHYSLNLKTGTDHLVGFQENVL 231
Query: 243 QFASRSFY--EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
Q + +K + + + + + + V M L+A +S R
Sbjct: 232 QLEPPQIPPAKYRRKAASTEHLATSTDPADIAELQWRFSTGISTVLMALLAIPLSRVAPR 291
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ V I F++Y + I K+
Sbjct: 292 RGKYGK-VVAAIILFFVIYNLSLIAKT 317
>gi|217031844|ref|ZP_03437347.1| hypothetical protein HPB128_199g52 [Helicobacter pylori B128]
gi|298735532|ref|YP_003728053.1| hypothetical protein HPB8_32 [Helicobacter pylori B8]
gi|216946496|gb|EEC25098.1| hypothetical protein HPB128_199g52 [Helicobacter pylori B128]
gi|298354717|emb|CBI65589.1| conserved hypothetical protein [Helicobacter pylori B8]
Length = 355
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 132/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYISFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ +I P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDEINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L Y+ + ++T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALVRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P L +SLS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLSLSLW 346
>gi|171913020|ref|ZP_02928490.1| permease YjgP/YjgQ family protein [Verrucomicrobium spinosum DSM
4136]
Length = 385
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/378 (11%), Positives = 112/378 (29%), Gaps = 37/378 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVID-LNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I RY ++ +TL +L ++ + + E++ +G+ + + A +P
Sbjct: 5 IFDRYIWRQVSSSTLTGVLVLTGVMVLGNVFKEMERLLGDTASLPLMAVAQFITYVIPYS 64
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ IP+ L ++VF ++ +E+ R G+S+ ++ SI + LV
Sbjct: 65 LIFTIPWALLTAILLVFGRMSADNEMTALRMTGMSMPRICAAVFALSIFMSGVCYLVNVE 124
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + L + + + E + ++ I
Sbjct: 125 LAPLAKTKIKRLFYDLALDDPAVLFQPGKVL-----DRFPGYRIFTQEREGNKLKNVEII 179
Query: 183 TIDKKNKIIHRKDADLAI------IYNDKVKLKKVVEYQYGRIPIDKNS----------- 225
+ A A + + ++ L+ G ++
Sbjct: 180 Q-TNLGRAERYIRAKRAEVVVTPGVTDFQLHLRNATVETGGGEADAASAGGEVNIMNDLQ 238
Query: 226 ------TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR------AETQ 273
T + P+ + + + + +++ S + T+
Sbjct: 239 FLYMGDTAITFPLSKLKEKTERVTSSMKDTSALWSEVNTGISSVDGQPLSEKLISVSRTE 298
Query: 274 FYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI 333
L + TL+ + + R I A + + + +
Sbjct: 299 LSMRYSFSLAAIVFTLVGIPLGITAQRRE-TSIGFALSLIVAVSYMVFVIFVNGLNERPS 357
Query: 334 LLPVAAALIPVILTISLS 351
+ P IP ++ I +
Sbjct: 358 VYPHLLMWIPNLIFIGVG 375
>gi|126031980|gb|ABN71556.1| putative permease [uncultured bacterium]
Length = 402
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 52/368 (14%), Positives = 135/368 (36%), Gaps = 23/368 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ + RY F+ L + A L+ + + ++ + + +S + A +P
Sbjct: 3 LFTSVDRYIFRLVAMPMLAVFVIAASLLVLDKMLKLFDFVATEGG-PVSVVFRMLANLLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IP ++ + F L +SEL + RA+G+ +LL + ++ L ++++
Sbjct: 62 EYASLAIPIGLMLGILFAFRKLATSSELDVMRAVGLGYGRLLRVPFIMAVGLAGVNLVIV 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ L + + + + + + I + ++ E
Sbjct: 122 GYLQPLSRYYYEQLQFELRSGALGASIKVGEFTTLKDK---IALRIERSEDEGRKLMGIF 178
Query: 181 SITIDKKNKIIHRKDADLAII-----YNDKVKLK----KVVEYQYGRIPIDKNSTTLNIP 231
D + +++ A D + + ++V+ G P + ++P
Sbjct: 179 VRVADDQGQVLS-VSAREGRFLALKDNPDTIVFRLSDGQIVQDSPGVTPRVLTFSRHDLP 237
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR--AETQFYFLIVIPLMLVAMTL 289
I + ++F ++ Y + + + + R F + +V +M++ + L
Sbjct: 238 IDLPALERFRQRGGGEREYLLPELLRLGWNDEVPLTQRNINRANFNYRMVEVVMMLLLPL 297
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK---SFGKSGILLPVAAALIPVIL 346
+A ++++ RS + V I + + + + GKSG+L A P ++
Sbjct: 298 LAVALAVPPKRS-TSALGVFVSIVMVVAYHKVNEYGQSIAALGKSGVL---LALWGPFVV 353
Query: 347 TISLSILI 354
++ + +
Sbjct: 354 FAAMIVWM 361
>gi|258622808|ref|ZP_05717826.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258584996|gb|EEW09727.1| conserved hypothetical protein [Vibrio mimicus VM573]
Length = 366
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/357 (13%), Positives = 119/357 (33%), Gaps = 20/357 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAGFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI EN +
Sbjct: 121 APWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFI----DNIENRKLHNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ I+ D+ + + + + L Y+ +D T + + G
Sbjct: 177 LAPRDSILPSVMFSNSGDVKELSDGRQIITLYNGTRYEGVPTRVDYMITNFDSYDGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ +S +E + +S S++ + + ++ IPL+ T++ +S
Sbjct: 237 REVK---SSGRDWEALPTLSLLKNSDLQAQAELQWRLSLVVCIPLL----TMLVVPLSAV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + I + ++ KS + G L + PV + + LI
Sbjct: 290 NPRQGRFAKM-GPAILIYLTYFLALSATKSAIEDGSLPVIIGLW-PVNAALLFAALI 344
>gi|32266995|ref|NP_861027.1| hypothetical protein HH1496 [Helicobacter hepaticus ATCC 51449]
gi|32263047|gb|AAP78093.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 359
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 59/349 (16%), Positives = 133/349 (38%), Gaps = 21/349 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
++R+ YYLK LG ID+ + +++ + S + + +
Sbjct: 2 IFRFVGVYYLKYFFIIFLGLEGFFLAIDMLKYVDELPD----SANLLILFLFYNGIFALT 57
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P ++ +I+ + ++S+L A+G S Q+L P +V S + + +
Sbjct: 58 YTLPISLVLCSILFYMAFLKSSQLTALMALGYSKRQILAPLLVISSVFIGGFIGLNTTSF 117
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG-AKKILPENHIWEDFTSIT 183
++ +I Q + + + + + Q IFI +L E E T
Sbjct: 118 AYAKEYAESIIYQ------QNTQNARENLLLKSDNQYIFIRKLYPLLNEQARAEGIKVFT 171
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG-RIPIDKNSTTLNIPIKMDGFQKFSE 242
+D ++K+ + +A A N+ LK V + + + + + + +++ + FS
Sbjct: 172 LDGEHKLKNYHEAQEAFFENNVWILKNVKSLEIASSLTLGEKALKITTSGEIEILKDFSS 231
Query: 243 QF--------ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + S + I + ++K N+ + + + Y L+VIP + I +
Sbjct: 232 KVLETIAQDKPTASVIDAIASLRIAHKQNV-SSDKIRSILYALLVIPFFVPLCIAIISYY 290
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
R I I ++ + + +G++ P L+P
Sbjct: 291 IPSLPRYGNLTFISFVCIIGALAVWGLFFSLSQLSVAGLIYPEIGLLLP 339
>gi|261838772|gb|ACX98538.1| hypothetical protein KHP_1349 [Helicobacter pylori 51]
Length = 355
Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 132/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L + Y+ + N+T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTIIYEMPLSFELGANALNTTHLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALVRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P L ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLW 346
>gi|16273591|ref|NP_439846.1| hypothetical protein HI1704 [Haemophilus influenzae Rd KW20]
gi|1176472|sp|P45333|LPTF_HAEIN RecName: Full=Lipopolysaccharide export system permease protein
lptF
gi|1574558|gb|AAC23350.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
Length = 372
Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/314 (15%), Positives = 110/314 (35%), Gaps = 24/314 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P +
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAAN-GNVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++++ K N ++ +N +FI +++ +
Sbjct: 121 SPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFI----DKIKDNQIRNVYLFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKM 234
+ + + A+ + + + LK + D T + +
Sbjct: 177 MTPQKQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYHAYLGY 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ +++ A + ++I S S K+ + ++ I + L + M LIA +
Sbjct: 237 QSAENTNDEVAELTLSQLIDLDSSSAKA----------ELHWRITLILAVPLMALIAVPL 286
Query: 295 SLEFSRSNQPRIIV 308
S R + I+
Sbjct: 287 SRVNPRQGRFAKIL 300
>gi|330962173|gb|EGH62433.1| hypothetical protein PMA4326_26812 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 375
Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 58/371 (15%), Positives = 124/371 (33%), Gaps = 32/371 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFMIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+G+ + +
Sbjct: 61 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAALVGLVVAWLSFSL 120
Query: 124 ATSGEKIGIDLIQQW------------KDNGDKQKSDIIPWMQISNPQQD---IFIGAKK 168
A G LI Q + + + I ++S+ + +FI K+
Sbjct: 121 APQGAAQFSQLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSDDRSQLTGVFISEKR 180
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ + T + +K ++ + + I+ N Y I D T L
Sbjct: 181 MSSDKSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGTAL 240
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
P + S F R+ + + I +PL + +T
Sbjct: 241 PKPEISEEVTDREAIPTSELF--------------GNRTARSVAELQWRISLPLSVFIVT 286
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+A +S + + + I I+ ++S + G L + +
Sbjct: 287 LMAIPLS-RVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHAIYL 345
Query: 349 SLSILILLQKE 359
++ + +L E
Sbjct: 346 AIGL-VLFYWE 355
>gi|262170557|ref|ZP_06038235.1| predicted permease [Vibrio mimicus MB-451]
gi|261891633|gb|EEY37619.1| predicted permease [Vibrio mimicus MB-451]
Length = 366
Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/357 (12%), Positives = 120/357 (33%), Gaps = 20/357 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L++Q+ + + + +FI EN +
Sbjct: 121 SPWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFI----DNIENRKLHNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ I+ D+ + + + + L Y+ +D T + + G
Sbjct: 177 LAPRDSILPSVMFSNSGDVKELSDGRQIITLYNGTRYEGVPTRVDYMITNFDSYDGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ +S +E + +S S++ + + ++ IPL+ T++ +S
Sbjct: 237 REVK---SSGRDWEALPTLSLLKNSDLQAQAELQWRLSLVVCIPLL----TMLVVPLSAV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + I + ++ KS + G L + PV + ++ L+
Sbjct: 290 NPRQGRFAKM-GPAILIYLTYFLALSATKSAIEDGSLPVIIGLW-PVNAALLIAALV 344
>gi|283786943|ref|YP_003366808.1| permease [Citrobacter rodentium ICC168]
gi|282950397|emb|CBG90045.1| putative permease [Citrobacter rodentium ICC168]
Length = 366
Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 67/363 (18%), Positives = 130/363 (35%), Gaps = 31/363 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLIKAAMILALFTGIIAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + K N + Q SN +FI + ++D
Sbjct: 121 GPWSSKHQDEVLAEAKANPGMAALAQGQFQQASNGSSVLFI----ESVDGSDFKDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
I K AD + + V L K ++ + D T + G
Sbjct: 177 IRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGH 236
Query: 238 QKF------SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
Q ++Q R+ + RA + ++ I + + M L+
Sbjct: 237 QAVALDPNDTDQMDMRTLW-------------TTDTDRARAELHWRITLIFTVFMMALMV 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+S+ R + + + + M + I T +KS G G L PV + +L ++L+
Sbjct: 284 VPLSVVNPRQGRV-LSMLPAMLLYLMFFLIQTSLKSNGGKGKLDPVIWMWLVNLLYLALA 342
Query: 352 ILI 354
I +
Sbjct: 343 IGL 345
>gi|328675789|gb|AEB28464.1| conserved membrane protein of unknown function [Francisella cf.
novicida 3523]
Length = 283
Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 52/299 (17%), Positives = 109/299 (36%), Gaps = 27/299 (9%)
Query: 72 LVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIG 131
+V ++ L SE+++ R+ G S Q+ V+ I+ I T++ IA ++
Sbjct: 1 MVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVVLVGIIGSITTIVFGGYIAPILQRQV 60
Query: 132 IDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII 191
+ + + W + + F+ I P + + NK+
Sbjct: 61 DTNMVTY--------NTHDLWFKTPDG----FMNIANIEPTKGKAYGIRKFMV-QDNKVR 107
Query: 192 HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYE 251
+ A+ A ND + +I N +I I + S +
Sbjct: 108 EIRYAESATYINDA----SANVFNISKIIFPSNDGQKHIDIVTNMTNAVWSNPIPISVAK 163
Query: 252 II----------KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+I +++ SN +F+ + PL L+ + L++ +S+ +RS
Sbjct: 164 VITINDNDYLNFSQLTSYMLSNSQAKDSISLKFWQEVFQPLALMILILLSVPLSIGSTRS 223
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ + + G F GF + I I L P+ A P ++ + L I + ++ ++
Sbjct: 224 STLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSKE 282
>gi|261840174|gb|ACX99939.1| hypothetical protein HPKB_1402 [Helicobacter pylori 52]
Length = 355
Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 132/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAIYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L + Y+ + N+T L + F+
Sbjct: 171 -KGKTLESYAEAKEAFFEDKYWILHDTIIYEMPLSFELGNNALNTTRLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALVRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P + +SLS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLSLSLW 346
>gi|317179675|dbj|BAJ57463.1| hypothetical protein HPF30_1366 [Helicobacter pylori F30]
Length = 355
Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 132/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L + Y+ + N+T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTIIYEMPLSFELGANALNATHLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALVRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P L ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLW 346
>gi|304396396|ref|ZP_07378277.1| permease YjgP/YjgQ family protein [Pantoea sp. aB]
gi|304355905|gb|EFM20271.1| permease YjgP/YjgQ family protein [Pantoea sp. aB]
Length = 366
Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/354 (14%), Positives = 125/354 (35%), Gaps = 13/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEVPTNLVLTLLGLGVPQMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ + + + + +
Sbjct: 61 QLILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMILMLFTSVVAAVNVIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ Q K N + ++ + + + + + + +
Sbjct: 121 GPWSSRYQDEVTQNAKANPGAAAMAAGQF--QTSGDGSAVLFVENV--KGNNFGNVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ K AD + K +VV G T L ++ F +
Sbjct: 177 LRPKGNARPSVVLADSGHLEQRK-DGSQVVTLDKG---TRFEGTALLRDFRITDFTNYQA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNY--RAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ ++ S++ N + + ++ + + ++ M L+ +S+ R
Sbjct: 233 IVGYKAATLDPNDSEQASLSDLVANKTPDFQAELHWRLTLVFAVLVMALMVVPLSVVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + + +KS G G L P + I + L++L+
Sbjct: 293 QGRV-LSMLPAMLLYLIFFLLQSSLKSSGAKGRLDPALWMWVVNISYLVLAVLL 345
>gi|237752465|ref|ZP_04582945.1| predicted protein [Helicobacter winghamensis ATCC BAA-430]
gi|229375954|gb|EEO26045.1| predicted protein [Helicobacter winghamensis ATCC BAA-430]
Length = 357
Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats.
Identities = 63/369 (17%), Positives = 125/369 (33%), Gaps = 36/369 (9%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+RY YLK Y + IDL + + + S + +L A Q
Sbjct: 5 FRYVSFLYLKYFFYLFVSLECFFVAIDLVKFLDDLPS----SANLFILLLAYDFMYASQF 60
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
I+P ++ IV+ NL ++S+ A+G + ++ P + S + + + +
Sbjct: 61 ILPLSLILAQIVLLINLLKSSQFTAFLALGFAKIKIFYPIFLLSFCITLLFIALNATPFA 120
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
++ +I Q K + +I KKI P E I+
Sbjct: 121 YAKERVDLIIDQGFVGNYKSDLFVKY--------NQNYIYFKKIYPLLQRAEGVIVYEIN 172
Query: 186 K-KNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPID-KNSTTLNI-----PI 232
+N + ++ +A L+ V G+ P+ + TT P
Sbjct: 173 PTQNSLTRIVESKMAQFNGQDWILENVTITTLDDNLELGKNPLKIQKETTYKTLHDFKPK 232
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML-VAMTLIA 291
+D + + +E + N + + Y L+ PL + M +A
Sbjct: 233 ILDNIYEKQGSISILDAFEAFMLLKEQNA----NTQKVRGALYNLLFFPLFAPLIMICLA 288
Query: 292 --ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
S ++ + + + G+ + ++ SG L P + ++P I T+
Sbjct: 289 VFIPNSNRYANFSLMTLAMILGVLITWGIFFS---FSKLSISGFLQPEFSVIMP-IFTLF 344
Query: 350 LSILILLQK 358
L+ K
Sbjct: 345 LASSFCFYK 353
>gi|217033870|ref|ZP_03439294.1| hypothetical protein HP9810_870g2 [Helicobacter pylori 98-10]
gi|216943633|gb|EEC23078.1| hypothetical protein HP9810_870g2 [Helicobacter pylori 98-10]
Length = 355
Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 133/359 (37%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A + L + Y+ + N+T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEDKYWILHDTIIYEMPLSFELGNNALNATHLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + +++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALMHQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P L ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALSLW 346
>gi|194323556|ref|ZP_03057333.1| hypothetical protein FTE_1717 [Francisella tularensis subsp.
novicida FTE]
gi|208779047|ref|ZP_03246393.1| hypothetical protein FTG_1341 [Francisella novicida FTG]
gi|194322411|gb|EDX19892.1| hypothetical protein FTE_1717 [Francisella tularensis subsp.
novicida FTE]
gi|208744847|gb|EDZ91145.1| hypothetical protein FTG_1341 [Francisella novicida FTG]
Length = 283
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/300 (15%), Positives = 111/300 (37%), Gaps = 29/300 (9%)
Query: 72 LVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIG 131
+V ++ L SE+++ R+ G S Q+ ++ ++ + T++ IA ++
Sbjct: 1 MVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGYIAPILQRQV 60
Query: 132 IDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII 191
+ + + W + + F+ I P + + NK+
Sbjct: 61 DTNMVTY--------NTHDLWFKTPDG----FMNIANIEPTKGKAYGIRKFMV-QDNKVR 107
Query: 192 HRKDADLAIIYNDK-----------VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ A+ A ND ++ + + IPI +
Sbjct: 108 EIRYAESATYINDASANVFNIRKIIFPASDGQKHIDIVTNMTNAVWSNPIPISVAKVITI 167
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ +F ++ M ++++ +F+ + PL L+ + L+A +S+ +R
Sbjct: 168 NDN-DYLNFSQLTSYMLSNSQA----KDSISLKFWQEVFQPLSLMILILLAVPLSIGSTR 222
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S+ + + G F GF + I I L P+ A P ++ + L I + ++ ++
Sbjct: 223 SSTLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSKE 282
>gi|308050966|ref|YP_003914532.1| permease YjgP/YjgQ family protein [Ferrimonas balearica DSM 9799]
gi|307633156|gb|ADN77458.1| permease YjgP/YjgQ family protein [Ferrimonas balearica DSM 9799]
Length = 372
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/357 (13%), Positives = 127/357 (35%), Gaps = 15/357 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K L+ + L + + I E + A L A +P ++
Sbjct: 2 IIFRYLLKEALRAQIAVLAVLVTIFISQQFVRILADAAE-GQFPGKLVATLLALNMPELL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++ + SE+ + A+G+S W + +V + ++ + + + +
Sbjct: 61 SLILPLSLFLGVMMAHGRMYADSEMTVLHAVGVSEWYVTRVTLVLAFIMALISGITAIYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A ++ ++++ + + I + + +
Sbjct: 121 APWAKETEYQVLEKAESEAGLAALVQGRF--QRAANGKAVIYVEGLSKG--KLDTVFVAQ 176
Query: 184 IDKKNKI---IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +K+ A+ I +++ R N N + F ++
Sbjct: 177 LPEKDDPEGETALVLAEGGRIVEGSDGSQRLQLLDGNRFSGVLNQKEYN----LVQFGEY 232
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S+ +K+S + S +F + A + ++ + +P+ L +TLIA +S
Sbjct: 233 EMEIKSQEAAHKRRKLSAYSMSQLFEEGSPHAWAEIHWRLAVPIALPLLTLIAVPMSRVN 292
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + I + ++ + ++G + P + + + I+++
Sbjct: 293 VRQGKFAKM-LPAILIYLGYFGLLMAGRKAIENGAIPPQLGLWWIHLAALVIGIVLI 348
>gi|167032002|ref|YP_001667233.1| permease YjgP/YjgQ family protein [Pseudomonas putida GB-1]
gi|166858490|gb|ABY96897.1| permease YjgP/YjgQ family protein [Pseudomonas putida GB-1]
Length = 371
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/348 (12%), Positives = 114/348 (32%), Gaps = 21/348 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ R+P +
Sbjct: 2 IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQ-GVLDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+ + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGLTMAPAALVALLVAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF--TS 181
A G +I Q + + ++P + +++ + +
Sbjct: 121 APLGVAQVQQIISQQ--DALTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRINLAGVFISE 178
Query: 182 ITIDKK---NKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
++ ++ A+ N + L+ Y D + +
Sbjct: 179 KRFNQDKTKDRAPSVLVAEKGHQEIQADGNRYLVLENGYRYDGNPGQADYRAIKYDTYGV 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + +E+ R + + R + + I +P+++ +TL+A
Sbjct: 239 LLPKPEVAEEVTEREAIPTSELIGKKG-------LRERAELQWRISLPILVFVVTLLAVP 291
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+S + + + I T++ ++ + G L
Sbjct: 292 LS-RVNPRQGRFLKLLPAILLYMAYLTMLISVRGALEKGKLPIALGMW 338
>gi|313157781|gb|EFR57192.1| permease, YjgP/YjgQ family [Alistipes sp. HGB5]
Length = 500
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/197 (18%), Positives = 77/197 (39%), Gaps = 6/197 (3%)
Query: 9 FFKYYLKTTLY-FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR--VPLIIQQ 65
K LK L +L I++FV+ +N + + EL +S G ++ + +I
Sbjct: 4 IHKLVLKAYLGPMVLTFFIVMFVLMMNIVWRYIDELVGKGLSAGIIIELMTYFMANMIPL 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+P L+ I+ NL EL+ ++ G+S+ ++ P ++ L+ + + + N +
Sbjct: 64 GLPLAMLLAAIMTMGNLGENYELLAMKSAGMSLIRITKPLIILVSLISVGSFFIGNNLVP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
K ++ + + + N ++ I + PE H+ D
Sbjct: 124 YANKKVFSILYDIRQQKQSLEFQDGLFF---NGIDNMSIRVSRQEPETHLLHDVLIYDNR 180
Query: 186 KKNKIIHRKDADLAIIY 202
N ++ AD I
Sbjct: 181 AANGDMNTIVADSGYIR 197
Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYG 311
+ K + YR++ +++ + +P+ ++ LI A + R + V
Sbjct: 354 ESAAKEALNQLYRSKVEWHKKMSLPVSIMIFVLIGAPLGA-IIRKGGLGLPVVVS 407
>gi|255535566|ref|YP_003095937.1| hypothetical protein FIC_01427 [Flavobacteriaceae bacterium
3519-10]
gi|255341762|gb|ACU07875.1| membrane protein, putative [Flavobacteriaceae bacterium 3519-10]
Length = 484
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/267 (16%), Positives = 82/267 (30%), Gaps = 13/267 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L Y K +L L+ + V + Q +LA V
Sbjct: 1 MIKKLDGYVIKSFLGPFLFIFSVLFFIFVVNIIWIQLAQFTGKGLSYWEILKLLAYLSV- 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++Q ++P L+ +I+ F + EL +A GIS+ +++ P V SI L F L
Sbjct: 60 KVVQLVLPLTILLSSIMTFGDFGERYELAAMKAAGISLTRIMMPLFVVSIALSFFLFLFS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N + ++ +++ ++Q +
Sbjct: 120 NNVIPDFQRKAKNMLYNIAATKPALNFSPGQFIQQ--IPGYSVKFDEITGENGENLTGVF 177
Query: 181 SITIDKKNKIIHRKDADLAIIYND------KVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ + A+ K+ L ++ +D N +
Sbjct: 178 IHKMANSYENQQSIVAEKGKFVQADNRNYLKLVLYNGHIFEENIGNVDYNQRI----KQP 233
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNK 261
D KF + + EII K + +
Sbjct: 234 DQAIKFDTLVSHFNISEIINKALEAEQ 260
Score = 52.5 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM 325
+N R + + + LI +S+ R + V I + Y + +
Sbjct: 360 YNSRIIMYQQRIFAYSMTCLIFFLIGSSLG-SIIRKGGLGLPVVIAIMVFIIFYILNLTV 418
Query: 326 KSFGKSGILLPVAAALIPVILTISLSILI 354
++ +G + P A+ +P ++ +
Sbjct: 419 ENMAWAGEMNPYLASWLPNMVLFPFGAWL 447
>gi|260582802|ref|ZP_05850588.1| permease [Haemophilus influenzae NT127]
gi|260094128|gb|EEW78030.1| permease [Haemophilus influenzae NT127]
gi|309972900|gb|ADO96101.1| Lipopolysaccharide export permease, LptF [Haemophilus influenzae
R2846]
Length = 367
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/314 (15%), Positives = 109/314 (34%), Gaps = 24/314 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P +
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAAN-GNVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++++ K N ++ +N +FI +++ +
Sbjct: 121 SPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFI----DKIKDNQIRNVYLFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKM 234
+ + + A+ + + + LK + D T +
Sbjct: 177 MTPQKQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYQAYLGY 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ +++ A + ++I S S K+ + ++ I + L + M LIA +
Sbjct: 237 QSAENTNDEVAELTLSQLIDLDSSSAKA----------ELHWRITLILAVPLMALIAVPL 286
Query: 295 SLEFSRSNQPRIIV 308
S R + I+
Sbjct: 287 SRVNPRQGRFAKIL 300
>gi|145635439|ref|ZP_01791140.1| predicted permease [Haemophilus influenzae PittAA]
gi|145267313|gb|EDK07316.1| predicted permease [Haemophilus influenzae PittAA]
Length = 367
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/314 (15%), Positives = 110/314 (35%), Gaps = 24/314 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P +
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAAN-GNVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++++ K N ++ +N +FI +++ +
Sbjct: 121 SPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFI----DKIKDNQIRNVYLFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKM 234
+ + + A+ + + + LK + + D T +
Sbjct: 177 MTPQKQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSVLPDFRITHFDEYQAYLGY 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ +++ A + ++I S S K+ + ++ I + L + M LIA +
Sbjct: 237 QSAENTNDEVAELTLSQLIDLNSSSAKA----------ELHWRITLILAVPLMALIAVPL 286
Query: 295 SLEFSRSNQPRIIV 308
S R + I+
Sbjct: 287 SRVNPRQGRFAKIL 300
>gi|260576761|ref|ZP_05844746.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
gi|259021013|gb|EEW24324.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
Length = 376
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 58/363 (15%), Positives = 135/363 (37%), Gaps = 23/363 (6%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY L +F L + + ++ + +++ S + +P +I
Sbjct: 5 DRYLLSQLLALFGFFSLVLVAVYWINRAVLLFDKLIG-DGQSALVFLEFSLLTLPSVIML 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++PF V + L R SELV+ +A G S +L P + +++ ++++ +
Sbjct: 64 VLPFSAFVATVYGINRLTRDSELVVMQATGFSPLRLARPVAIFGLIVAAMMAVLLHVLVP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ +N + +M +P + I + ++I P+ + + F + T
Sbjct: 124 ESRATLAQRTLEVSENLAARFLMDGQFM---HPAKGITLYIREISPKGELRDVFLADTRS 180
Query: 186 KKNKIIHRKDADLAIIYND----KVKLKKVVE----YQYGRIPIDK-NSTTLNIPIKMDG 236
+ + A A++ K+ + + + GR+ + + T ++ + G
Sbjct: 181 PTSHATY--TASRALLVKGDSGPKLVMLDGMVQNLNNKEGRMSVTRFADFTYDLATLIAG 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ ++ S Y+++ + + Q + + P++ +A LI S L
Sbjct: 239 PKVLKRNASALSTYDLLWPSAEILQETAETPEALWFQAHNRLAQPILGLAAALIGFSALL 298
Query: 297 --EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG--KSGILLPVAAALIPVILTISLSI 352
FSR +A + + I T M S G + AA + ++++
Sbjct: 299 LGAFSRFG-LWRQIAVAVALMITVQGIATTMLSLGLKQPEFWPLAYAA---PLAGLAMAA 354
Query: 353 LIL 355
+L
Sbjct: 355 GLL 357
>gi|82701536|ref|YP_411102.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
gi|82409601|gb|ABB73710.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
Length = 358
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/353 (12%), Positives = 115/353 (32%), Gaps = 8/353 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY + L + + L + + + L + +
Sbjct: 2 KIIERYITRELLIPFMVVTVILATLFASFSMARFLAGAVT-DSLGLIPVLRLVFLKTLIA 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
++ ++P V I+ L+R E+V+ R+ G+S +++ ++ +I +G+ + L
Sbjct: 61 LEVLMPIALYVAVIMGLGRLHRDQEIVVLRSAGVSEHRIIYAVLIVAIPMGLISGLFSIF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ L Q + + + + + ++ I + +
Sbjct: 121 ARPWAYEESYLLNAQAEAELNTDRFRAGRFY--GSEKKGRVIYVQAKDSSGKQMGEV--F 176
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
K+ A A + ++ + + I + S T + F+K
Sbjct: 177 HYLNKHDSSEIILAKKA--HQPELVFGQRPQIHLLDGSIYRLSHTGKGD-TVVQFEKLVY 233
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S + + +K + + R + + + PL + + LIA S R
Sbjct: 234 FTDSGNVTDYRRKAASTAALMQSDQPRDTAELQWRLSRPLATILLALIAVPFSRASPRQT 293
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + Y + + +++ + G + V + + +I +L
Sbjct: 294 KGDKTYYLAALVFAIYYILSGLAQTWVEQGTIGRVPGVWWLYAVMLLFAISLL 346
>gi|152973138|ref|YP_001338284.1| putative transmembrane protein, transport [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238892750|ref|YP_002917484.1| putative transport system transmembrane component [Klebsiella
pneumoniae NTUH-K2044]
gi|262045294|ref|ZP_06018319.1| inner membrane protein YjgP [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|290512174|ref|ZP_06551541.1| transmembrane protein yjgP [Klebsiella sp. 1_1_55]
gi|330016471|ref|ZP_08308444.1| lipopolysaccharide export system permease protein LptF [Klebsiella
sp. MS 92-3]
gi|150957987|gb|ABR80017.1| putative transmembrane protein, transport [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238545066|dbj|BAH61417.1| putative transport system transmembrane component [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
gi|259037350|gb|EEW38596.1| inner membrane protein YjgP [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|289775169|gb|EFD83170.1| transmembrane protein yjgP [Klebsiella sp. 1_1_55]
gi|328528832|gb|EGF55775.1| lipopolysaccharide export system permease protein LptF [Klebsiella
sp. MS 92-3]
Length = 365
Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 57/363 (15%), Positives = 126/363 (34%), Gaps = 31/363 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L +P +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPTNLVLSLLGLGIPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ G + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLIKAAMILALFTGAVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + + + + + + + D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQF--QQASDGNAVMFIESVN--GNRFHDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ K AD + + V L K ++ + D T N + G
Sbjct: 177 LRPKGNARPSVVVADSGELSQQKDGSQVVTLNKGTRFEGTAMLRDFRITDFNNYQAIIGH 236
Query: 238 QKFS------EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
Q S EQ R+ ++ H RA + ++ + + M L+
Sbjct: 237 QAVSADPDDTEQMDMRTLWK-------------THTDRARAELHWRFTLVATVFIMALMV 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+S+ R + + + + + + + T +KS G G + P +L +L+
Sbjct: 284 VPLSVVNPRQGRV-LSMLPAMLLYLVFFLLQTSIKSNGGKGKMDPAIWMWAINLLYFALA 342
Query: 352 ILI 354
+L+
Sbjct: 343 VLL 345
>gi|86133416|ref|ZP_01051998.1| predicted permease YjgP/YjgQ family [Polaribacter sp. MED152]
gi|85820279|gb|EAQ41426.1| predicted permease YjgP/YjgQ family [Polaribacter sp. MED152]
Length = 483
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/199 (16%), Positives = 69/199 (34%), Gaps = 3/199 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL +Y K +L + L + ++ + L + + S+ +I
Sbjct: 2 KILDKYILKSFLVPFIATFLIVLFVLVMQALWQAFENIAGK-GISVIFILKFLYYTTLMI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I Q +P L+ +I+ NL E +++ G+S+ +L+ P + +I L L +N
Sbjct: 61 IPQALPIGVLLSSIMALGNLGENYEFAAAKSAGVSLQRLVRPIGILAIALSGLNFLFLNN 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ +L K ++P ++ +K E ++ +
Sbjct: 121 VFPYANLKQRNLYLNIKKKKPALA--LVPGSFNADIPGYQIKFDEKYGEEENLLKKVWIY 178
Query: 183 TIDKKNKIIHRKDADLAII 201
+ A+ I
Sbjct: 179 DLTSNRGNQKVITAESGKI 197
Score = 46.4 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+T++Y + L V + I A + R + + I + + T K+
Sbjct: 365 YDTEYYNRVAFSLSCVILFFIGAPLG-SIIRKGGFGLPMILAIAVYVLYFFTNTFGKNLA 423
Query: 330 KSGILLPVAAALIPVILTISLSILI 354
+ + + + I IL I L+IL+
Sbjct: 424 EESSITSILGSWISAILMIPLAILL 448
>gi|153009928|ref|YP_001371143.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
49188]
gi|151561816|gb|ABS15314.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
49188]
Length = 402
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/362 (14%), Positives = 120/362 (33%), Gaps = 27/362 (7%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L L A+ + + + + + + + + ++ +P I ++
Sbjct: 7 YILRRVAIMFLAVLGAAVGITWTVQVLQRIDFLTT-SGQTFQTIIQFSSLLIPSAIPLVM 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF ++ +N+ SELV+ A G ++ P ++ + ++ + + LV N +
Sbjct: 66 PFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAAVISVVSFLVANYVDPYA 125
Query: 128 --------EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
DL+ G+ +K ++Q++ + D IG I D
Sbjct: 126 RMNMRAMIANASADLMNVIVQEGNFRKLADNLYIQVAERRADGSIGGLFIADSRDPSLD- 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGF 237
I I D+ ++ N +V+ + V + I + + L+ D
Sbjct: 185 -LIYYAADGAIASTPTGDMLLMQNGEVQRRDVSDGTVSIIKFNSYAFDLSQFASAGDDFV 243
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV--- 294
++ S + R + + + + L V +IA +
Sbjct: 244 IYAKDRPLSYLLNPDPNDPILQTR-----PLRYKAELHRRLTQWLYPVVFAMIALAFAGD 298
Query: 295 --SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S +R + ++ + + Y +G + V L+P + +
Sbjct: 299 SRSHREARVSASFSAISTALLVYWAGYFASDRADK--DAGYI--VVMYLVPAAVILVTGF 354
Query: 353 LI 354
+
Sbjct: 355 AL 356
>gi|254242519|ref|ZP_04935841.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|126195897|gb|EAZ59960.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
Length = 372
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/360 (13%), Positives = 116/360 (32%), Gaps = 18/360 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ A R+P +
Sbjct: 2 IVFRYLSREVLVTMSAVSAVLLVIIMSGRFIKYLAQAAQ-GLLDPGSLFLIMAFRIPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + ++L+ I + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQKRLLGYTMAPALLVAILVAWLSLFL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A G L+ + + ++P + +++ +
Sbjct: 121 APQGINQFALLLNKQDTLTEFDT--LVPGRFQAMRDGTRVTYTEELSKDRGELAGIFISQ 178
Query: 184 ID----KKNKIIHRKDADLAIIY---NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
D + + I A+ + L Y+Y P N +
Sbjct: 179 KDLNSSNQERGISILVAEKGTQNIQADGSRYLILHNGYRYDGNPGQANYRAIQYDTYGVM 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
K + F N R + + + + PL++ +TL+A +S
Sbjct: 239 LPKPEASSEVSERDAVPTADLF-----GSDNPRYQAELQWRLSTPLLVFVVTLLAVPLS- 292
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + + I ++ ++ G + + + L+I +LL
Sbjct: 293 RVNPRQGRFLKLLPAILLYMGYLALLIAVRGQLDKGKIPMAIGLWW--VHGLFLAIGLLL 350
>gi|68250307|ref|YP_249419.1| permease [Haemophilus influenzae 86-028NP]
gi|145633639|ref|ZP_01789366.1| molybdate ABC transporter permease protein [Haemophilus influenzae
3655]
gi|145639139|ref|ZP_01794746.1| predicted permease [Haemophilus influenzae PittII]
gi|148825753|ref|YP_001290506.1| permease [Haemophilus influenzae PittEE]
gi|229847325|ref|ZP_04467427.1| predicted permease [Haemophilus influenzae 7P49H1]
gi|260581045|ref|ZP_05848867.1| permease [Haemophilus influenzae RdAW]
gi|68058506|gb|AAX88759.1| predicted permease [Haemophilus influenzae 86-028NP]
gi|144985516|gb|EDJ92332.1| molybdate ABC transporter permease protein [Haemophilus influenzae
3655]
gi|145271701|gb|EDK11611.1| predicted permease [Haemophilus influenzae PittII]
gi|148715913|gb|ABQ98123.1| predicted permease [Haemophilus influenzae PittEE]
gi|229809750|gb|EEP45474.1| predicted permease [Haemophilus influenzae 7P49H1]
gi|260092285|gb|EEW76226.1| permease [Haemophilus influenzae RdAW]
gi|301170459|emb|CBW30066.1| conserved inner membrane protein [Haemophilus influenzae 10810]
gi|309750720|gb|ADO80704.1| Lipopolysaccharide export permease, LptF [Haemophilus influenzae
R2866]
Length = 367
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/314 (15%), Positives = 110/314 (35%), Gaps = 24/314 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P +
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAAN-GNVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++++ K N ++ +N +FI +++ +
Sbjct: 121 SPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFI----DKIKDNQIRNVYLFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKM 234
+ + + A+ + + + LK + D T + +
Sbjct: 177 MTPQKQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYHAYLGY 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ +++ A + ++I S S K+ + ++ I + L + M LIA +
Sbjct: 237 QSAENTNDEVAELTLSQLIDLDSSSAKA----------ELHWRITLILAVPLMALIAVPL 286
Query: 295 SLEFSRSNQPRIIV 308
S R + I+
Sbjct: 287 SRVNPRQGRFAKIL 300
>gi|262274979|ref|ZP_06052790.1| putative permease [Grimontia hollisae CIP 101886]
gi|262221542|gb|EEY72856.1| putative permease [Grimontia hollisae CIP 101886]
Length = 366
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/358 (12%), Positives = 116/358 (32%), Gaps = 17/358 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +KT L L ++ F + + + L +P +
Sbjct: 2 IIVRYLIRETVKTQLAVLFVLFLVFFSQKFIRVLANATD-GSIPGGDVLTLVGLYMPSMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +I+ G +
Sbjct: 61 MLMLPLSLYIGILITFGRLYAESEITVMNATGIGNKFLIRAALYLAIITGSVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + + + + P + I +
Sbjct: 121 TPWANDKEVKVMESLEADTGLELLVQGKI--QTTPDGQAVVYVNDITGDGKDLHKVFIAQ 178
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ + + A+ I + L + Y+ +D T + G
Sbjct: 179 PVPRGTLRPNVVVAEKGFISELPDGRQVLDLNNGIRYEGVPTLLDYTVTDYENYQVLIGQ 238
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ ++ + ++ + S RA+ + + I + L + MT+I +S
Sbjct: 239 REVRQKNRDWD--AMPTQILVNESSP-----RAQAELQWRISLVLCIPLMTMIVVPLSAV 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + + I+ KS + G L ++ + ++++++
Sbjct: 292 NPRQGRFAK-LFPAVLIYLAYFLSISAAKSAVEEGKLPAEIGLWSVNLIALLVALMLI 348
>gi|148546262|ref|YP_001266364.1| permease YjgP/YjgQ family protein [Pseudomonas putida F1]
gi|148510320|gb|ABQ77180.1| permease YjgP/YjgQ family protein [Pseudomonas putida F1]
Length = 383
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/348 (12%), Positives = 114/348 (32%), Gaps = 21/348 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ R+P +
Sbjct: 14 IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQ-GVLDPGVLFLIMGFRLPGFL 72
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+ + + +
Sbjct: 73 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMAPAALVALLVAWLSLSL 132
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF--TS 181
A G +I Q + + ++P + +++ + +
Sbjct: 133 APLGVAQVQQIISQQ--DALTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRINLGGVFISE 190
Query: 182 ITIDKK---NKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
++ ++ A+ N + L+ Y D + +
Sbjct: 191 KRFNQDKTKDRAPSVLVAEKGHQEIQADGNRYLVLENGYRYDGNPGQADYRAIKYDTYGV 250
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + +E+ R + + R + + + +P+++ +TL+A
Sbjct: 251 LLPKPEVAEEVTEREALPTSELIGKEG-------LRERAELQWRLSLPILVFVVTLLAVP 303
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+S + + + I T++ ++ + G L
Sbjct: 304 LS-RVNPRQGRFLKLLPAILLYMAYLTMLISVRGALEKGKLPIALGMW 350
>gi|319896844|ref|YP_004135039.1| inner membrane protein [Haemophilus influenzae F3031]
gi|317432348|emb|CBY80703.1| conserved inner membrane protein [Haemophilus influenzae F3031]
Length = 364
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/314 (15%), Positives = 110/314 (35%), Gaps = 24/314 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P +
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAAN-GNVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALLMSLLTASIATYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++++ K N ++ SN +FI +++ +
Sbjct: 121 SPWAIQKQANIVEDAKANPTMGVLSSGQFISTSNNNVVLFI----DQIKDNQIHNVYLFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKK---VVEYQYGRIPIDKNSTTLNIPIKM 234
I K +I A+ + + + LK V + +
Sbjct: 177 ITPKKQIKPSVVTAEKGELIALPNGDQVLNLKNTQRVEGTSVLPDFRITHFDEYQAYLGH 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ +++ A + ++I++ S + K+ + ++ I + L + M LIA +
Sbjct: 237 QETENNADEAAELTLVQLIQQDSPAAKA----------ELHWRITLILAVPLMALIAVPL 286
Query: 295 SLEFSRSNQPRIIV 308
S R + I+
Sbjct: 287 SRVNPRQGRFAKIL 300
>gi|239831521|ref|ZP_04679850.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
3301]
gi|239823788|gb|EEQ95356.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
3301]
Length = 402
Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/362 (14%), Positives = 120/362 (33%), Gaps = 27/362 (7%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L L A+ + + + + + + + + ++ +P I ++
Sbjct: 7 YILRRVAIMFLAVLGAAVGITWTVQVLQRIDFLTT-SGQTFQTIVQFSSLLIPSAIPLVM 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF ++ +N+ SELV+ A G ++ P ++ + ++ + + LV N +
Sbjct: 66 PFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAAVISVVSFLVANYVDPYA 125
Query: 128 --------EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
DL+ G+ +K ++Q++ + D IG I D
Sbjct: 126 RMNMRAMIANASADLMNVIVQEGNFRKLADNLYIQVAERRADGSIGGLFIADSRDPALD- 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGF 237
I I D+ ++ N +V+ + V + I + + L+ D
Sbjct: 185 -LIYYAADGAIASTPTGDMLLMQNGEVQRRDVSDGTVSIIKFNSYAFDLSQFASAGDDFV 243
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV--- 294
++ S + R + + + + L V +IA +
Sbjct: 244 IYAKDRPLSYLLNPDPNDPILQTR-----PLRYKAELHRRLTQWLYPVVFAMIALAFAGD 298
Query: 295 --SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S +R + ++ + + Y +G + V L+P + +
Sbjct: 299 SRSHREARVSASFSAISTALLVYWAGYFASDRADK--DAGYI--VLMYLVPAAVILVTGF 354
Query: 353 LI 354
+
Sbjct: 355 AL 356
>gi|315636068|ref|ZP_07891325.1| conserved hypothetical protein [Arcobacter butzleri JV22]
gi|315479637|gb|EFU70313.1| conserved hypothetical protein [Arcobacter butzleri JV22]
Length = 355
Score = 84.5 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 65/364 (17%), Positives = 132/364 (36%), Gaps = 31/364 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K YL + L+ + ID + + S + + +
Sbjct: 3 ILSKYILKKYLINFIIVLISLELFFVGIDYLQNFKNIP----ASANLQLLYILYNSFFTL 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI-LLGIFTVLVINP 122
+P + IV + +E V A+G + + P V+ SI LL L + P
Sbjct: 59 TLALPLSIVFGWIVTLVLFIKNNEFVAFNALGATRKNIFMPVVIVSISLLITLIFLQMTP 118
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A S E+ L ++ N KSDI + ++ +K+LP E+
Sbjct: 119 LAYSYEQKRKILNDEYFSN---TKSDIFL------KYNEYYVYFQKLLPLEKKAENIHIY 169
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVE-YQYGRIPIDKNSTTLNI----------- 230
+ K + ++ + A NDK + V + I I+ + +
Sbjct: 170 KV-KGDNLVETIIGEKAYFQNDKWYVVDVKVINKPENIDINNSKLDVRYEKFLHTLEGFK 228
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P +D + F+ + + + + T Y ++IP ++ + ++
Sbjct: 229 PKILDNVYESKSDFSIMDAVSALILLKDQG----MNTQKIRTILYNQLIIPFFVIPILIL 284
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
S + SR V++ IF +++ ++ SG ++P + L+ + + +
Sbjct: 285 VYSFASLNSRFFNMAKFVSFSIFGTLIVWGFFFLVFRLTSSGTIIPEISMLLTMFIWMVF 344
Query: 351 SILI 354
SI
Sbjct: 345 SIYF 348
>gi|24372947|ref|NP_716989.1| hypothetical protein SO_1369 [Shewanella oneidensis MR-1]
gi|24347090|gb|AAN54434.1|AE015581_1 conserved hypothetical protein [Shewanella oneidensis MR-1]
Length = 370
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 54/364 (14%), Positives = 138/364 (37%), Gaps = 28/364 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + LK + L + + I + + S A L +P ++
Sbjct: 2 IVFRYLIREVLKAQIAVLFVLLTIFISQHFVRILADASD-GEFPASLIATLIGLNLPYLV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+VI +G+S W + ++ +++ +FT + +
Sbjct: 61 VLVLPLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E+ ++++ + + ++P + ++I +N + + F +
Sbjct: 121 APWAEEQQNQVLEKAQSEAGLAALVQGRF--QASPNGRAVLFVERIGKDNELEKVFVAQL 178
Query: 184 IDKKNKI--IHRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTL-----NIP 231
D ++I + A + + +++L V YQ P K+ + +
Sbjct: 179 PDPNDEIGLTNVVVAKGGRVIEDQNGSQQLQLNDGVRYQ--GSPQQKDYQMIEFGGYKMQ 236
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
IK + + ++ E++K A +F++ + IPL + MTLIA
Sbjct: 237 IKEQQVDERRRKLSALPLGELLK----------IDGPEAVAEFHWRLAIPLAIPIMTLIA 286
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
++ R + + + + ++ + + G++ + + +
Sbjct: 287 VPLARVNVRQGKFAKM-LPAVLLYLGYFGLMVAGRKALQDGVIPLYLGMWWIHLSALIMG 345
Query: 352 ILIL 355
IL+L
Sbjct: 346 ILLL 349
>gi|288962055|ref|YP_003452365.1| predicted permease [Azospirillum sp. B510]
gi|288914335|dbj|BAI75821.1| predicted permease [Azospirillum sp. B510]
Length = 385
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 57/381 (14%), Positives = 128/381 (33%), Gaps = 54/381 (14%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFV---IDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY F+ L TLY G + +++ + L EI G + L VP
Sbjct: 4 LQRYLFRNLLIATLYSTAGLTLTIWLSQSLRLIEIVVSAG----APMGMFLWLLLLTVPT 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++P + + + + SELV+ RA G+ + L P +V ++ + +++
Sbjct: 60 FLGVVLPLALVGAILFTYNKMTTDSELVVMRAAGVGPFSLSTPALVLAVAVMAIVLVLNV 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQ----------KSDIIPWMQISNPQQD---IFIGAKK 168
I + + + + + + + +++ + + + I +
Sbjct: 120 WITPAAHRELVRMEYAVRSDYSQLFLREGVFNEVGDRFSVFLRDRDSDGNLHKVLIHDGR 179
Query: 169 I-LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT 227
I D + D + + +L ++ + R +D +
Sbjct: 180 QPDKPVTIMGDRALMQTGADGTRFVVYDGNRQELDRKTNRLSQLF---FERYAVDLKAVA 236
Query: 228 LNIPIK-MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+ D ++ +E S + +M + + PL+ +
Sbjct: 237 PQAADRWPDARERSTEDLMSGNVPAQDDRMRRG----------LIAELHHRFSSPLLALT 286
Query: 287 MTLIA--ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI-------LLPV 337
L+A A +S EF+R Q V + L + G + + + +
Sbjct: 287 FALVALSALLSGEFNRRGQSS-RVTIAVLLVMGLQ-----AGALGLTSLAGKATVFVPLM 340
Query: 338 AA----ALIPVILTISLSILI 354
A AL+P + +S + +
Sbjct: 341 YAMPVVALLPALWVMSRGLSL 361
>gi|15599023|ref|NP_252517.1| hypothetical protein PA3828 [Pseudomonas aeruginosa PAO1]
gi|116051856|ref|YP_789301.1| hypothetical protein PA14_14500 [Pseudomonas aeruginosa UCBPP-PA14]
gi|218889888|ref|YP_002438752.1| putative permease [Pseudomonas aeruginosa LESB58]
gi|254236732|ref|ZP_04930055.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|296387656|ref|ZP_06877131.1| putative permease [Pseudomonas aeruginosa PAb1]
gi|313109247|ref|ZP_07795215.1| hypothetical protein PA39016_001710056 [Pseudomonas aeruginosa
39016]
gi|9950003|gb|AAG07215.1|AE004800_4 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|115587077|gb|ABJ13092.1| putative permease [Pseudomonas aeruginosa UCBPP-PA14]
gi|126168663|gb|EAZ54174.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|218770111|emb|CAW25873.1| putative permease [Pseudomonas aeruginosa LESB58]
gi|310881717|gb|EFQ40311.1| hypothetical protein PA39016_001710056 [Pseudomonas aeruginosa
39016]
Length = 372
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 50/360 (13%), Positives = 116/360 (32%), Gaps = 18/360 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ A R+P +
Sbjct: 2 IVFRYLSREVLVTMSAVSAVLLVIIMSGRFIKYLAQAAQ-GLLDPGSLFLIMAFRIPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + ++L+ I + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQKRLLGYTMAPALLVAILVAWLSLFL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A G L+ + + ++P + +++ +
Sbjct: 121 APQGINQFALLLNKQDTLTEFDT--LVPGRFQAMRDGTRVTYTEELSKDRGELAGIFISQ 178
Query: 184 ID----KKNKIIHRKDADLAIIY---NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
D + + I A+ + L Y+Y P N +
Sbjct: 179 KDLNSSNQERGISILVAEKGTQNIQADGSRYLILHNGYRYDGNPGQANYRAIQYDTYGVM 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
K + F N R + + + + PL++ +TL+A +S
Sbjct: 239 LPKPEASSEVSERDAVPTADLF-----GSDNPRYQAELQWRLSTPLLVFVVTLLAVPLS- 292
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + + I ++ ++ G + + + L+I +LL
Sbjct: 293 RVNPRQGRFLKLLPAILLYMGYLALLIAVRGQLDKGKIPMAIGLWW--VHGLFLAIGLLL 350
>gi|170746990|ref|YP_001753250.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
JCM 2831]
gi|170653512|gb|ACB22567.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
JCM 2831]
Length = 386
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 52/364 (14%), Positives = 123/364 (33%), Gaps = 20/364 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ L TL L+G +++ + + ++ + +P ++
Sbjct: 4 IERYIFRIALGATLACLIGLTGTIWLTQALRELDLVTAKGQ-TLLVFLFVTGLSLPTLVV 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I P + I LN SEL++ A G+ LL PF+ ++ + ++ +
Sbjct: 63 VIAPVALFIGTIYALNKLNGDSELIVMSAAGMPPRSLLRPFLTLALFVSFLVGFLVVVVM 122
Query: 125 TSGEKIGIDLIQQWK----------DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
+ + D+I + + + + I + P + K + ++
Sbjct: 123 PASFQELRDVITRVRGDFIANVVKEGQFTQLDNGITFHFRERGPGGTL----KGLFIQDR 178
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
T + + ++ + I+ N V ++ + ++ + L
Sbjct: 179 REAGKTKVYLAERGNAVDVDGQSYLILENGSVHQQQRESRDSSILTFERYTIDLAAFAPP 238
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-AS 293
D + + RS +++ + R + + + L +A+ IA A+
Sbjct: 239 DSDTIY--KPRERSTAQLL-FPDTTEGYYKLQKGRFRAELHDRLSACLYPLALVFIAFAA 295
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + + +A I + L I + V A ++ I LS L
Sbjct: 296 LGDPRTTRQGRGVAIAGAIVAVVAL-RIGGFAAVSAAARSPAAVLAVYSVPLVAILLSSL 354
Query: 354 ILLQ 357
++
Sbjct: 355 LIFY 358
>gi|195940457|ref|ZP_03085839.1| permease YjgP/YjgQ family protein [Escherichia coli O157:H7 str.
EC4024]
Length = 366
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 55/357 (15%), Positives = 125/357 (35%), Gaps = 19/357 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + K N + + + + + + + + D
Sbjct: 121 GPTSSRHQDEVLAEAKANPGLAALAQGQF--QQATDGNSVLFIESV--DGNRFNDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ K AD + + V L K ++ + D T + G
Sbjct: 177 LRPKGNARPSVVVADSGQLAQRKDGSQVVTLNKGTRFEGTAMLRDFRITDFQNYQAIIGH 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q + ++ M+ RA + ++ I + + M L+ +S+
Sbjct: 237 QAVALDPTDTEQMDMRTLMN-------TDTDRARAELHWRITLVFTVFMMALMVVPLSVV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + T +KS G G + P+ + L + L++ +
Sbjct: 290 NPRQGRV-LSMLPAMLLYLVFFLLQTSIKSNGGKGKIDPMIWTWVVNGLYLLLAVGL 345
>gi|148827127|ref|YP_001291880.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase [Haemophilus influenzae PittGG]
gi|148718369|gb|ABQ99496.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase [Haemophilus influenzae PittGG]
Length = 367
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 48/314 (15%), Positives = 109/314 (34%), Gaps = 24/314 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P +
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAAN-GNVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQQILVKVALIMSLLTAGIAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++++ K N ++ +N +FI +++ +
Sbjct: 121 SPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFI----DKIKDNQIRNVYLFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKM 234
+ + + A+ + + + LK + D T +
Sbjct: 177 MTPQKQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYQAYLGY 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ +++ A + ++I S S K+ + ++ I + L + M LIA +
Sbjct: 237 QSAENTNDEVAELTLSQLIDLDSSSAKA----------ELHWRITLILAVPLMALIAVPL 286
Query: 295 SLEFSRSNQPRIIV 308
S R + I+
Sbjct: 287 SRVNPRQGRFAKIL 300
>gi|196228894|ref|ZP_03127760.1| permease YjgP/YjgQ family protein [Chthoniobacter flavus Ellin428]
gi|196227175|gb|EDY21679.1| permease YjgP/YjgQ family protein [Chthoniobacter flavus Ellin428]
Length = 376
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 54/378 (14%), Positives = 116/378 (30%), Gaps = 28/378 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY L T + +++ + ++ + + + + + +P
Sbjct: 2 KLIDRYVGGQLLVTFSLAVSVLSVVLVLGNIFKQLLDLLVKNDTPLEVVVSFLSYILPFS 61
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ IP+ L ++VF L+ ELV RA G+SI +L + + +
Sbjct: 62 LSFTIPWAFLTAVLLVFGRLSAEHELVAFRASGVSIPRLCYTVFLLAAACVATCFWINID 121
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A + + + + S P + I++ +
Sbjct: 122 VAPRAQGKMKEALYNVAVTNPLAMFGADLVI-DSFPNKKIYL----ESSNGPELHNLLVY 176
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVK---LKKVVEYQYGRIPIDKNSTTLNI--------- 230
+ N ++ A +I D K L + + Y D L I
Sbjct: 177 ESNDDNLLLKVIFARRGLIETDGEKKQLLLHIYDATYEARDDDDVENLLKIKQGITMREA 236
Query: 231 --PIKMDGFQKFSEQFASRSFY--EIIKKMSFSNKSNIFHNYRAE------TQFYFLIVI 280
PI ++ K + S ++ +S +S + R E T+
Sbjct: 237 TLPISLEELHKKYHKGGLPSMTTGALLDHLSEKTESTMTEKERIEQHSATITEINKRYSF 296
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
L + L+ +++ R I + + Y I I + + P
Sbjct: 297 SLAAICFALVGVPLAITAHRKE-TSIGFLISLCVALVYYFFIIIANTVREKPQWHPAELV 355
Query: 341 LIPVILTISLSILILLQK 358
+P IL + + +
Sbjct: 356 WVPNILCVVFGGWLFYRM 373
>gi|262401791|ref|ZP_06078356.1| predicted permease [Vibrio sp. RC586]
gi|262351763|gb|EEZ00894.1| predicted permease [Vibrio sp. RC586]
Length = 366
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/357 (12%), Positives = 118/357 (33%), Gaps = 20/357 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAGFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI EN +
Sbjct: 121 APWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFI----DNIENRKLHNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ ++ + + + + + L Y+ +D T + + G
Sbjct: 177 LAPRDSVLPSVMFSNSGAVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ ++ +E + +S S++ + + ++ IPL+ T++ +S
Sbjct: 237 REVK---STGRDWEALPTLSLLKNSDLQAQAELQWRLSLVVCIPLL----TMLVVPLSAV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + I + ++ KS + G L + PV + + LI
Sbjct: 290 NPRQGRFAKM-GPAILIYLTYFLTLSATKSAIEDGSLPVIIGLW-PVNAALLFAALI 344
>gi|330873094|gb|EGH07243.1| hypothetical protein PSYMP_02391 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 375
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 58/368 (15%), Positives = 122/368 (33%), Gaps = 33/368 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + ++L+G+ + +
Sbjct: 61 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAVLVGLLVAWLSFSL 120
Query: 124 ATSGEKIGIDLIQQW------------KDNGDKQKSDIIPWMQISNPQQD---IFIGAKK 168
A G LI Q + + + I ++S + +FI K+
Sbjct: 121 APQGAAQFSQLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKR 180
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ + T + +K ++ + + I+ N Y + D L
Sbjct: 181 MSNDKSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVVKYDTYGAAL 240
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
P + S F R+ + + I +PL + +T
Sbjct: 241 PKPEISEEITDREAIPTSELF--------------GNPAPRSVAELQWRISLPLSVFIVT 286
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+A +S + + + I I+ ++S + G L + I
Sbjct: 287 LMAIPLS-RVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWW--VHGI 343
Query: 349 SLSILILL 356
L I ++L
Sbjct: 344 YLGIGLVL 351
>gi|261342656|ref|ZP_05970514.1| inner membrane protein YjgP [Enterobacter cancerogenus ATCC 35316]
gi|288315304|gb|EFC54242.1| inner membrane protein YjgP [Enterobacter cancerogenus ATCC 35316]
Length = 366
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 54/357 (15%), Positives = 125/357 (35%), Gaps = 19/357 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L +I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVKILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGIIAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + K N + + + + + + + + D
Sbjct: 121 GPASSRHQDEVLAEAKANPGLAALAQGQF--QQASDGNSVLFIESV--DGNRFNDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ K AD + + V L K ++ + D T + G
Sbjct: 177 LRPKGNARPSVVVADSGQLSQRKDGSQVVTLNKGTRFEGTAMLRDFRITDFQNYQAIVGH 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q + + ++ + RA + ++ I + + M L+ +S+
Sbjct: 237 QTVALDPTDTEQMNMRTLIA-------TDSDRARAELHWRITLVFTVFMMALMVVPLSVV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + T +KS G G + P + L + L++ +
Sbjct: 290 NPRQGRV-LSMLPAMLLYLVFFLLQTSIKSNGGKGKIDPAIWTWVVNGLYLLLAVGL 345
>gi|163803712|ref|ZP_02197572.1| putative permease [Vibrio sp. AND4]
gi|159172495|gb|EDP57360.1| putative permease [Vibrio sp. AND4]
Length = 366
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/364 (10%), Positives = 113/364 (31%), Gaps = 23/364 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + + + +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFLSQKFISVLAKASD-GDIPAGLIFSVVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +I+ +
Sbjct: 61 LLMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALCLAIITSGVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L Q + + P + ++ +
Sbjct: 121 SPWSQDRVEQLYDQVEAENSVDLLQKGQF--QGTPDGSSVVFID--DIKDSTLSNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ ++ ++ + + + + + Y+ ++ T + + G
Sbjct: 177 MRPRDSVLPSVMFSSSGEVKELSDGRQVITMHDGSRYEGVPTRVEYMVTKFDQYEGVIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV-AMTLIAASVSL 296
++ ++ Y + + + A+ + + I + + + +T++ +S
Sbjct: 237 REVKQKGRDWEAYPTLDLI-------GHPDPEAQAELQWRISL-FVCIPLLTMLVIPLSA 288
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + I + I+ KS + G + I + L + IL
Sbjct: 289 VNPRQGRFAKM-GPAILIYLAYFLAISATKSALEEGTIPAAIGMW--PINAMLLIVAILA 345
Query: 357 QKED 360
D
Sbjct: 346 NMMD 349
>gi|55980366|ref|YP_143663.1| hypothetical protein TTHA0397 [Thermus thermophilus HB8]
gi|55771779|dbj|BAD70220.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 347
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 52/368 (14%), Positives = 119/368 (32%), Gaps = 40/368 (10%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY + L LL ++L + E+ + R P
Sbjct: 2 KTLDRYLLRETLPLFGGGLLVIVLLFLGGAVYEVLAPLVAK-GADPYTLLRYLLFRTPEA 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + P L +V+ L +EL A+G+ +LL PF++ + + L+
Sbjct: 61 LARGAPVAYLFALLVLLSRLGEDAELKALLALGVRRERLLLPFLLLGTAIALAAFLLGEG 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF---------IGAKKILPEN 173
+ G DL++ ++ ++ ++ + P + Q + IGA ++L
Sbjct: 121 LVPQALAKGQDLLR--REVLERPRALLTPGATFQDAQGRVVYVGKVEGEAIGALRVLSRE 178
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVE-----YQYGRIPIDKNSTTL 228
+ A+ + +++ + + + +
Sbjct: 179 EVLL------------------AERGSFRGGVLHVEEGTRITYEGSRPRTLARFQRGELV 220
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ D +Q + + + ++++ Y PL
Sbjct: 221 LKDLTFDPWQNPANRMTLAELRKEVQRLRQMGVRAGLEATTY----YRRFAEPLAAPVFA 276
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L A ++ ++ +V + + F Y ++ + G+ L P AA P +L
Sbjct: 277 LFAVGLAFYLLGGSRSLGLVGVAVLT-FFYYATWSVGRIMGEQNALDPFLAAFGPNLLYG 335
Query: 349 SLSILILL 356
+L + + L
Sbjct: 336 ALGLFLFL 343
>gi|46198337|ref|YP_004004.1| hypothetical protein TTC0029 [Thermus thermophilus HB27]
gi|46195959|gb|AAS80377.1| hypothetical membrane spanning protein [Thermus thermophilus HB27]
Length = 347
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 50/362 (13%), Positives = 119/362 (32%), Gaps = 28/362 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY + L LL ++L + E+ + R P
Sbjct: 2 KTLDRYLLREALPLFGGGLLVIVLLFLGGAVYEVLAPLVAK-GADPYTLLRYLLFRTPEA 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + P L +V+ L +EL A+G+ +LL PF++ + + L+
Sbjct: 61 LARGAPVAYLFALLVLLSRLGEDAELKALLALGVRRERLLLPFLLLGTAIALAAFLLGEG 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G DL++ ++ ++ ++ + P + Q + K
Sbjct: 121 LVPQALAQGQDLLR--REVLERPRALLTPGATFQDAQGRVVYVGKVEGEAIGAL------ 172
Query: 183 TIDKKNKIIHRKD---ADLAIIYNDKVKLKKVVE-----YQYGRIPIDKNSTTLNIPIKM 234
+++ R++ A+ + +++ + + + + +
Sbjct: 173 ------RVLSREEVLLAERGSFRGGVLHVEEGTRITYEGSRPRTLARFQRGELVLKDLTF 226
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
D +Q + + + ++++ Y PL L A +
Sbjct: 227 DPWQNPANRMTLAELRKEVQRLRQMGVRAGLEATTY----YRRFAEPLAAPVFALFAVGL 282
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ ++ +V + + F Y ++ + G+ L P AA P +L +L + +
Sbjct: 283 AFYLLGGSRSLGLVGVAVLT-FFYYATWSVGRIMGEQNALDPFLAAFGPNLLYGALGLFL 341
Query: 355 LL 356
L
Sbjct: 342 FL 343
>gi|157736891|ref|YP_001489574.1| hypothetical protein Abu_0640 [Arcobacter butzleri RM4018]
gi|157698745|gb|ABV66905.1| conserved hypothetical membrane protein [Arcobacter butzleri
RM4018]
Length = 355
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 65/364 (17%), Positives = 132/364 (36%), Gaps = 31/364 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K YL + L+ + ID + + S + + +
Sbjct: 3 ILSKYILKKYLINFIIVLISLELFFVGIDYLQNFKNIP----ASANLQLLYILYNSFFTL 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI-LLGIFTVLVINP 122
+P + IV + +E V A+G + + P V+ SI LL L + P
Sbjct: 59 TLALPLSIVFGWIVTLVLFIKNNEFVAFNALGATRKNIFMPVVIVSISLLITLIFLQMTP 118
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A S E+ L ++ N KSDI + ++ +K+LP E+
Sbjct: 119 LAYSYEQKRKILNDEYFSN---TKSDIFL------KYNEYYVYFQKLLPLEKKAENIHIY 169
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVE-YQYGRIPIDKNSTTLNI----------- 230
+ K + ++ + A NDK + V + I I+ + +
Sbjct: 170 KV-KGDNLVETIIGEKAYFQNDKWYVVDVKVINKPENIDINNSKLDVRYEKFLHTLEGFK 228
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P +D + F+ + + + + T Y ++IP ++ + ++
Sbjct: 229 PKILDNVYESKSDFSIMDAVSALILLKDQG----MNTQKIRTILYNQLIIPFFVIPILIL 284
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
S + SR V++ IF +++ ++ SG ++P + L+ + + +
Sbjct: 285 VYSFASLNSRFFNMAKFVSFSIFGTLIVWGFFFLVFRLTSSGTVIPEISMLLTMFIWVIF 344
Query: 351 SILI 354
SI
Sbjct: 345 SIYF 348
>gi|193214339|ref|YP_001995538.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
35110]
gi|193087816|gb|ACF13091.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
35110]
Length = 455
Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/202 (17%), Positives = 69/202 (34%), Gaps = 11/202 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISR--GAVLAATRVPL 61
IL RY K ++ + G +VFV + + + + L ++
Sbjct: 3 ILTRYILKSHIGPFV---FGFATVVFVFLMQFLARYLDRFVGKGLEMNVIIELIVLQIAW 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P L+ ++ F N+ +SE+ RA GIS+ +++ P +V +L N
Sbjct: 60 MAVLAAPMAVLISTLMTFGNMVNSSEMTAIRASGISLLRIMIPIIVAGAILTYLMERFNN 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ L+ + + S+ + I A+K ++ T
Sbjct: 120 IVLPEANHQAKVLLMDISRAKPSFGLEENVF---SDMIRGYTILARKTDEKSSNIAGVTI 176
Query: 182 ITIDKKNKIIH-RKDADLAIIY 202
D +N + AD
Sbjct: 177 --YDNRNSTRNVVITADSGFFE 196
Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 1/98 (1%)
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
FS SN + + + IP + + + + +R I + +
Sbjct: 347 FSINSNTRLINKYLVEVHKKYAIPFACLFFVFVGVPLGV-LARRGGFGIGAGLSLIFFLL 405
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + + I+ P A + ++ + ++L
Sbjct: 406 YWVFLIGGEKLADRDIVSPAIAMWMGNVVISVIGAVLL 443
>gi|251792100|ref|YP_003006820.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase [Aggregatibacter aphrophilus NJ8700]
gi|247533487|gb|ACS96733.1| 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase [Aggregatibacter aphrophilus NJ8700]
Length = 367
Score = 83.8 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 53/362 (14%), Positives = 122/362 (33%), Gaps = 29/362 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + L +++ F L + L +P +
Sbjct: 2 ILTRYLTKEVFKSQIAILFILLLIFFCQQLVRVLGSAAN-GQVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ L SE+ + RA GI L+ ++ S+ +
Sbjct: 61 QLMLPLCLFIAILLTLGRLYAESEITVMRACGIGQRILVKIVLILSLFTAAVAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+++++ K N + +M +N +FI +++ +
Sbjct: 121 TPWAIHKQTEIVEEAKANPNMGALSAGQFMTANNSDFVLFI----DNIQDNQINNVYVFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKM 234
K + A+ + + + L+ ++ I D T +
Sbjct: 177 TQPKGQSKPSVIVAEKGELKALPNGDQILNLQNSDRFEGTAILPDFRITHFDEYQAYLGH 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+++ ++ + + K T+F++ + + L + M L+A +
Sbjct: 237 KTVADDADEAGEMDIMQLWNANAPAMK----------TEFHWRLTLILAVPIMALLAVPL 286
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP--VILTISLSI 352
S R + V + + + + + +KS G +G L +P I +L+I
Sbjct: 287 SRVNPRQGRFAK-VLPALLLYLIYFLLQSSLKSAGGAGKLDASL--FMPLVNIAFFALAI 343
Query: 353 LI 354
+
Sbjct: 344 FL 345
>gi|114048399|ref|YP_738949.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-7]
gi|113889841|gb|ABI43892.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-7]
Length = 370
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 55/364 (15%), Positives = 138/364 (37%), Gaps = 28/364 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + LK + L + + I + + S A L +P ++
Sbjct: 2 IVFRYLIREVLKAQIAVLFVLLTIFISQHFVRILADASD-GEFPASLIATLIGLNLPYLV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+VI +G+S W + ++ +++ +FT + +
Sbjct: 61 VLVLPLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILALINMLFTGYLSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E+ ++++ + + ++P + ++I +N + + F +
Sbjct: 121 APWAEEQQNQVLEKAQSEAGLAALVQGRF--QASPNGRAVLFVERIGKDNELDKVFVAQL 178
Query: 184 IDKKNKI--IHRKDADLAIIYND-----KVKLKKVVEYQYGRIPIDKNSTTL-----NIP 231
D ++I + A + D ++ L V YQ P K+ + +
Sbjct: 179 PDPNDEIGLTNVVVAKGGRVQEDQNGSQQLHLNDGVRYQ--GSPQQKDYQMIEFGGYKMQ 236
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
IK + + ++ S +++K A +F++ + IPL + MTLIA
Sbjct: 237 IKEQQVDERRRKLSALSLADLMK----------VEGPEAVAEFHWRLAIPLAIPIMTLIA 286
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
++ R + + + + ++ + + G++ + + +
Sbjct: 287 VPLARVNVRQGKFAKM-LPAVLLYLGYFGLMVAGRKALQDGVIPQYLGMWWIHLSALIMG 345
Query: 352 ILIL 355
IL+L
Sbjct: 346 ILLL 349
>gi|78188415|ref|YP_378753.1| hypothetical protein Cag_0437 [Chlorobium chlorochromatii CaD3]
gi|78170614|gb|ABB27710.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
Length = 443
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 1/138 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K + + + + L+ + + + + L A + ++
Sbjct: 3 ILDRYILKKQIAPFFFAFITIVALLQLQFFSTFAERFIGK-GITFVAIVELLALQSAWMV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P LV ++ F L TSE+ + RA GIS+++++ P +V S+LL N +
Sbjct: 62 SFALPMAVLVAVVMSFGTLTTTSEMTVCRASGISLYRVMVPVIVVSLLLSFTVERFNNVL 121
Query: 124 ATSGEKIGIDLIQQWKDN 141
L+ + +
Sbjct: 122 LPQANYQAKSLMAEIARS 139
Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 11/86 (12%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
R ++ + L V L+ A + + +R + A + + + ++ +
Sbjct: 346 RYMAAYHKKYSLSLACVVFVLVGAPLGV-LARRGGFGVGAAISLLFFVLYWMLMISGEKM 404
Query: 329 GKSGILLPVAAALIPVILTISLSILI 354
+ G+L P+ A + + + + +
Sbjct: 405 AERGVLDPMIAMWMADGVMALIGVGL 430
>gi|145631588|ref|ZP_01787354.1| predicted permease [Haemophilus influenzae R3021]
gi|144982788|gb|EDJ90314.1| predicted permease [Haemophilus influenzae R3021]
Length = 367
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 48/314 (15%), Positives = 110/314 (35%), Gaps = 24/314 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P +
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAAN-GNVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++++ K N ++ +N +FI +++ +
Sbjct: 121 SPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFI----DKIKDNQIRNVYLFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKM 234
+ + + A+ + + + LK + + D T +
Sbjct: 177 MTPQKQTKPSVVTAEKGELIALPNGDQVLNLKNTKRVEGTSVLPDFRITHFDEYRAYLGY 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ +++ A + ++I S S K+ + ++ I + L + M LIA +
Sbjct: 237 QAAENTNDEAAELTLSQLIDLDSSSAKA----------ELHWRITLILAVPLMALIAVPL 286
Query: 295 SLEFSRSNQPRIIV 308
S R + I+
Sbjct: 287 SRVNPRQGRFAKIL 300
>gi|328676743|gb|AEB27613.1| conserved membrane protein of unknown function [Francisella cf.
novicida Fx1]
Length = 283
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 47/300 (15%), Positives = 111/300 (37%), Gaps = 29/300 (9%)
Query: 72 LVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIG 131
+V ++ L SE+++ R+ G S Q+ ++ ++ + T++ IA ++
Sbjct: 1 MVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTIVFGGYIAPILQRQV 60
Query: 132 IDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII 191
+ + + W + + F+ I P + + NK+
Sbjct: 61 DTNMVTY--------NTHDLWFKTPDG----FMNIANIEPTKGKAYGIRKFMV-QDNKVR 107
Query: 192 HRKDADLAIIYNDK-----------VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ A+ A ND ++ + + IPI +
Sbjct: 108 EIRYAENATYINDASANVFNIRKIIFPASDGQKHIDIVTNMTNAVWSNPIPISVAKVITI 167
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ +F ++ M ++++ +F+ + PL L+ + L+A +S+ +R
Sbjct: 168 NDN-DYLNFSQLTSYMLSNSQA----KDSISLKFWQEVFQPLSLMILILLAVPLSIGSTR 222
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
S+ + + G F GF + I I L P+ A P ++ + L I + ++ ++
Sbjct: 223 SSTLILKLLLGAFFGFAFFIINQIFGPIALILHLPPILGAAGPTVIALILLIYLFIKSKE 282
>gi|16767724|ref|NP_463339.1| permease [Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|167991268|ref|ZP_02572367.1| putative permease [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|16423044|gb|AAL23298.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|205330408|gb|EDZ17172.1| putative permease [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|261249567|emb|CBG27434.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267996823|gb|ACY91708.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301160963|emb|CBW20497.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312915575|dbj|BAJ39549.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|323132816|gb|ADX20246.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
gi|332991288|gb|AEF10271.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 366
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 66/363 (18%), Positives = 129/363 (35%), Gaps = 31/363 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + K N + Q +N +FI + + D
Sbjct: 121 GPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGNSVLFI----ESVDGSDFHDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
I K AD + + V L K ++ + D T + G
Sbjct: 177 IRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGH 236
Query: 238 QKF------SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
Q ++Q R+ + N RA + ++ I + + M L+
Sbjct: 237 QAVALDPNDTDQMDMRTLWN-------------TDNDRARAELHWRITLVFTVFMMALMV 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+S+ R + + + + + + I T +KS G G L PV ++ ++L+
Sbjct: 284 VPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLALA 342
Query: 352 ILI 354
I +
Sbjct: 343 IGL 345
>gi|26987718|ref|NP_743143.1| permease YjgP/YjgQ family protein [Pseudomonas putida KT2440]
gi|24982406|gb|AAN66607.1|AE016288_6 conserved hypothetical protein [Pseudomonas putida KT2440]
gi|313497348|gb|ADR58714.1| Permease YjgP/YjgQ family protein [Pseudomonas putida BIRD-1]
Length = 371
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 42/348 (12%), Positives = 114/348 (32%), Gaps = 21/348 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ R+P +
Sbjct: 2 IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQ-GVLDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+ + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMAPAALVALLVAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF--TS 181
A G +I Q + + ++P + +++ + +
Sbjct: 121 APLGVAQVQQIISQQ--DALTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRINLGGVFISE 178
Query: 182 ITIDKK---NKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
++ ++ A+ N + L+ Y D + +
Sbjct: 179 KRFNQDKTKDRAPSVLVAEKGHQEIQADGNRYLVLENGYRYDGNPGQADYRAIKYDTYGV 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + +E+ R + + R + + + +P+++ +TL+A
Sbjct: 239 LLPKPEVAEEVTEREALPTSELIGKEG-------LRERAELQWRLSLPILVFVVTLLAVP 291
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+S + + + I T++ ++ + G L
Sbjct: 292 LS-RVNPRQGRFLKLLPAILLYMAYLTMLISVRGALEKGKLPIALGMW 338
>gi|84387840|ref|ZP_00990855.1| putative permease [Vibrio splendidus 12B01]
gi|84377355|gb|EAP94223.1| putative permease [Vibrio splendidus 12B01]
Length = 366
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/360 (10%), Positives = 109/360 (30%), Gaps = 27/360 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFISVLADASD-GDIPASLILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +++ +
Sbjct: 61 LLMLPLSIYIGILLTFGRLYAESEIVVMNATGIGNKFLIQSALYLALITASVAAFNSFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + ++ + P + + + E+
Sbjct: 121 SPWSQDKVEQMYEEVAAENSVDLLPKGKF--EGTPDGSSVVFID--DIDGNKLENVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ ++ ++ D+ + + ++V+ G + + F++
Sbjct: 177 MRPRDSVLPSVMFSKSGDVKELSDG----RQVIVMYDG---TRHEGVPTRLDYMVTHFEE 229
Query: 240 FSEQFASRSF------YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ R +E I + + + ++ IPL+ T++
Sbjct: 230 YEGLIGQREVEKKGRDWEAIPTLELIGNPENSAKAELQWRISLVLCIPLL----TMLVVP 285
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S R + + I + I+ KS + G + V L + ++I
Sbjct: 286 LSAVNPRQGRFAK-IGPAILIYLTYFLAISATKSSIEEGSIPAVVGMWPINALLLFVAIG 344
>gi|320449377|ref|YP_004201473.1| putative permease, YjgP/YjgQ family [Thermus scotoductus SA-01]
gi|320149546|gb|ADW20924.1| putative permease, YjgP/YjgQ family [Thermus scotoductus SA-01]
Length = 368
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 48/339 (14%), Positives = 113/339 (33%), Gaps = 35/339 (10%)
Query: 43 LPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLL 102
L + + A + VP ++ Q+ P + ++VF L+ + G+ +W+
Sbjct: 38 LEGVPLWKVARWLSYHVPGVLVQVFPIALVTTTVLVFGRLSAEGAQFALLSGGVPLWRAA 97
Query: 103 NPFVVGSILLGIFTVLVINPIATS-GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQD 161
P V LL + + + EK+ + + G + I +
Sbjct: 98 LPLVGIGALLSGVALYLQERLVPHYNEKVRVAWWDEIHTQGAGLFRLKGLQIPIGKGRN- 156
Query: 162 IFIGAKKILPENHIWEDFTSITI-DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP 220
+ + E + ++ + A+ + ++ L+ ++
Sbjct: 157 --LYFEDFDMEKKEMVGVRIASFQGEEGTFL---FAERGSWEDKRITLRDYRFFRIDFQE 211
Query: 221 IDKNSTT-------------------LNIPIKMDGFQKFSEQFASRSF-----YEIIKKM 256
I + T + + + + ++ + SF E KM
Sbjct: 212 IPRLETASDLLAQTRKVFRVVSQGKIMEVESDLSRARAIADYADTFSFGQDSLSEAWAKM 271
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
++A +F+ + +PL + + L+A +++L++ RS + + +
Sbjct: 272 RD-PFLAPLEKWQARLEFHSKLALPLANLVLVLLAVAMALKYGRS--TGLALGLSVVLAL 328
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
Y + + +S G L P A +L + L I L
Sbjct: 329 GYYGVFFLGRSLAGIGALPPEVGAWGANLLFLLLGIRAL 367
>gi|90580731|ref|ZP_01236534.1| putative permease [Vibrio angustum S14]
gi|90437999|gb|EAS63187.1| putative permease [Vibrio angustum S14]
Length = 366
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 47/358 (13%), Positives = 108/358 (30%), Gaps = 19/358 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L ++ I + + +P +
Sbjct: 2 IIVRYLTRETLKSQLAVLFVLFLVFISQKFISILADATD-GSIPSDLILTFMGLSIPSMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A G+ LL + +++ G + +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGMGKKLLLQSALALAVITGAIAAVNSFWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A ++ L ++ K + P I I +
Sbjct: 121 APWSQEHIEQLKEETKAGPTLNMLVKGTF--QPAPNGSGVIFIDNITDKGSKLHKVFVAQ 178
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + + AD + +L + + + F +
Sbjct: 179 LKATDTLQPSVIVADNGTVK----ELSDGRQMLELNDGARYEGVPTQLNYSITHFNDYQA 234
Query: 243 QFASRSF------YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
R +E M+ ++ + +F ++ IPL+ +I +S
Sbjct: 235 LIGQREVKAGNRDWEAQPTMALIKDQSLAAKAELQWRFSLVLCIPLL----VMIVVPLSA 290
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + +A + + I+ KS + GI+ I T+ +++ +
Sbjct: 291 VNPRQGRFAK-LAPAVLIYLAYFLAISSAKSAIEDGIIPSAIGMWPINITTLLVALAL 347
>gi|319776036|ref|YP_004138524.1| permease [Haemophilus influenzae F3047]
gi|329123194|ref|ZP_08251763.1| inner membrane protein YjgP [Haemophilus aegyptius ATCC 11116]
gi|317450627|emb|CBY86847.1| Predicted permease [Haemophilus influenzae F3047]
gi|327471539|gb|EGF16983.1| inner membrane protein YjgP [Haemophilus aegyptius ATCC 11116]
Length = 367
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 48/314 (15%), Positives = 111/314 (35%), Gaps = 24/314 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P++
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAAN-GNVPADLVFSLLGLGMPIMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++++ K N ++ +N +FI +++ +
Sbjct: 121 SPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFI----DKIKDNQIRNVYLFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKM 234
+ + + A+ + + + LK + D T + +
Sbjct: 177 MTPQKQTKPSVITAEKGELIALPSGDQVLNLKNTKRVEGTSALPDFRITHFDEYHAYLGY 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ +++ A + ++I S S K+ + ++ I + L + M LIA +
Sbjct: 237 QSAENTNDEVAELTLSQLIDLDSSSAKA----------ELHWRITLILAVPLMALIAVPL 286
Query: 295 SLEFSRSNQPRIIV 308
S R + I+
Sbjct: 287 SRVNPRQGRFAKIL 300
>gi|163746448|ref|ZP_02153806.1| hypothetical protein OIHEL45_13625 [Oceanibulbus indolifex HEL-45]
gi|161380333|gb|EDQ04744.1| hypothetical protein OIHEL45_13625 [Oceanibulbus indolifex HEL-45]
Length = 377
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 54/374 (14%), Positives = 126/374 (33%), Gaps = 43/374 (11%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY L +F L + L ++ + +++ S A +P +I
Sbjct: 4 IDRYILSQLLVMFGFFALVLVALFWINRAVVLFDRLIG-DGQSALVFLEFTALGLPKLIV 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P T ++ V ++ SEL + +A G W+L P V + +G+ + + +
Sbjct: 63 TVLPIATFAASVYVTNRMSGESELTVLQAAGSGPWRLARPVFVFGLCVGLMMTALSHFLV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWM----------QISNPQQ---DIFIGAKKILP 171
+ + N Q ++ + + D+F+ ++
Sbjct: 123 PMAQGQLKQREAEISRNLTAQLLTEGTFLHPSDEVTFYTRAIDNDGVLRDVFLSDRRKAD 182
Query: 172 ENHIWEDFTSI-TIDKKNKIIHRKDADLAIIYNDKVKLKKV--VEYQYGRIPIDKNSTTL 228
E I+ + + N + + + ++ +L ++ + P+
Sbjct: 183 EGVIYTAAEAYLARNGDNTTLIMLNGMAQRLDTEQNRLATAKFRDFSFDISPLVSTDDA- 241
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
Q S ++ + + + + + + PL +
Sbjct: 242 -------TDQSVSSMVTPDLLWDWAGLAAQLDTAPGIIAE----ELHSRLAQPLFCIVAA 290
Query: 289 LIA-ASVSL-EFSRSNQPRIIVAYGIFSGFMLYTII-----TIMKSFGKSGILLPVAAAL 341
+I A++ L FSR R V F L I T++ ++ L P+ A
Sbjct: 291 MIGFATLILGGFSRFGVWREAVIA-----FGLLIAIDGLRGTLVVQIRETAALWPL--AY 343
Query: 342 IPVILTISLSILIL 355
+P ++ L++ +L
Sbjct: 344 LPSLIGAVLTLAML 357
>gi|261211062|ref|ZP_05925351.1| predicted permease [Vibrio sp. RC341]
gi|260839563|gb|EEX66174.1| predicted permease [Vibrio sp. RC341]
Length = 366
Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 44/357 (12%), Positives = 117/357 (32%), Gaps = 20/357 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI EN +
Sbjct: 121 APWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFI----DNIENRKLHNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ ++ + + + + + L Y+ +D T + + G
Sbjct: 177 LAPRDSVLPSVMFSNSGAVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ ++ +E + +S ++ + + ++ IPL+ T++ +S
Sbjct: 237 REVK---STGRDWEALPTLSLLKNADRQAQAELQWRLSLVVCIPLL----TMLVVPLSAV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + I + ++ KS + G L + PV + + LI
Sbjct: 290 NPRQGRFAKM-GPAILIYLTYFLTLSATKSAIEDGSLPVIIGLW-PVNAALLFAALI 344
>gi|261416539|ref|YP_003250222.1| permease YjgP/YjgQ family protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261372995|gb|ACX75740.1| permease YjgP/YjgQ family protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302326800|gb|ADL26001.1| putative membrane protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 478
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 39/199 (19%), Positives = 74/199 (37%), Gaps = 5/199 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K + L L G L V L +I + + S + + ++
Sbjct: 2 ILVRYVLKELIGPFLASLFGITFLFVVDFLVKILDNVLSK-GLPTSTVLEIFVLNLAWML 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IP LV +++ F ++ E+ +A GIS L+ P ++ ++LL + V+ N +
Sbjct: 61 SLSIPMAVLVASLMTFGRMSGDQEITAVKAAGISPLSLMRPVLLVALLLSVLMVVFNNWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++L+ D + P +++ +I P +
Sbjct: 121 LPEANHRSVELMNAVSRKKPHVFIDAGRLITQF-PGVQLWVN--RIDPVSGTLYGIQIFE 177
Query: 184 IDKKNKIIHRKDADLAIIY 202
++KK AD A +
Sbjct: 178 MEKKGAP-RIVYADSASMD 195
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 40/124 (32%), Gaps = 15/124 (12%)
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYR--------------AETQFYFLIVIPLMLVAMTLI 290
S F + ++K+ +++ R + + LI
Sbjct: 310 DSMQFVQGLRKIRVQEAASLRATERAWGRMEGELKRAAQYMVEIHKKFSTAFACFIFVLI 369
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A + + +R + Y + + + + ++ I+ P A I I+ ++
Sbjct: 370 GAPLGI-MARKGGIGTGILYSLAFFVIYWICLIGGENLADRLIVSPELAMWISNIIIGAV 428
Query: 351 SILI 354
IL+
Sbjct: 429 GILL 432
>gi|168464639|ref|ZP_02698542.1| putative permease [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|195632768|gb|EDX51222.1| putative permease [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
Length = 366
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 66/363 (18%), Positives = 129/363 (35%), Gaps = 31/363 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKTVLVKAAMVLALFTGILAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + K N + Q +N +FI + + D
Sbjct: 121 GPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFI----ESVDGSDFHDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
I K AD + + V L K ++ + D T + G
Sbjct: 177 IRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGH 236
Query: 238 QKF------SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
Q ++Q R+ + N RA + ++ I + + M L+
Sbjct: 237 QAVALDPNDTDQMDMRTLWN-------------TDNDRARAELHWRITLVFTVFMMALMV 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+S+ R + + + + + + I T +KS G G L PV ++ ++L+
Sbjct: 284 VPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLALA 342
Query: 352 ILI 354
I +
Sbjct: 343 IGL 345
>gi|328544011|ref|YP_004304120.1| permease YjgP/YjgQ [polymorphum gilvum SL003B-26A1]
gi|326413755|gb|ADZ70818.1| Permease YjgP/YjgQ [Polymorphum gilvum SL003B-26A1]
Length = 395
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 54/369 (14%), Positives = 128/369 (34%), Gaps = 28/369 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY + + L +V+ + + +I + + +P +
Sbjct: 2 KTLERYIVRRAGIAFVMTLAAMTGVVWATQALRQLDLVTSKGQ-TIVQFVGITMLAMPFL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + PF ++ I+V L+ SEL++ A G S + +L P V+ S + + + +
Sbjct: 61 VLVVAPFALMIALILVLNALSSDSELIVINASGGSRFLVLRPVVLFSAAIMLLSATLSLY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP--ENHIWEDF- 179
+A G D I + + + ++ + + I ++ + + D
Sbjct: 121 VAPLGLAQLRDEIARVRVDLVANIVRPGRFITVEDGL-TFHIRNRRGDGSLDGLLLHDRR 179
Query: 180 ---TSITIDKK-NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN--IPIK 233
T T +I+ D L ++ + ++ + + + + L+ IP
Sbjct: 180 DPQTVFTYQADVGRIVEAADRTLLLMQDGTIQRRPKTDGDISIVRFQSYAFDLSALIPET 239
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
K SE+ + + N R + + + PL +A LI +
Sbjct: 240 STPIYKASERPTLALL--LGTHQDDYARQN---ADRLRAELHDRLSQPLYPLAFGLIVFA 294
Query: 294 VSLEFSR--SNQPRIIVAYGIFSGFML----YTIITIMKSFGKSGILLPVAAALIPVILT 347
L +R + + + + L + + T++ SG + ++
Sbjct: 295 F-LGQARTTRQGRGMAMLGALVACIGLRTAGFGVSTLI-----SGQASLTLGYYLVPLIG 348
Query: 348 ISLSILILL 356
I +++ +L
Sbjct: 349 IGVALWTIL 357
>gi|216263568|ref|ZP_03435563.1| putative permease, YjgP/YjgQ family protein [Borrelia afzelii
ACA-1]
gi|215980412|gb|EEC21233.1| putative permease, YjgP/YjgQ family protein [Borrelia afzelii
ACA-1]
Length = 333
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 56/336 (16%), Positives = 118/336 (35%), Gaps = 23/336 (6%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
MIL+ + DL E N S+ + +P + L + NL+
Sbjct: 1 MILIILGDLFVNLLNFLEK-NISLKDIFYIYYLYLPKAFSDGVALSFLFAISNLIGNLSM 59
Query: 85 TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG-EKIGIDLIQQWKDNGD 143
+E++ + G+ + ++L P ++ S+ + + N + K + + +NG
Sbjct: 60 RNEIIGLFSCGVPLTRILRPIILISVFISVVLFFFDNYLVIDTVAKRDLLIKNSIGNNGS 119
Query: 144 KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYN 203
K+ II K + + + + I D K++ R D + A +
Sbjct: 120 IDKTIII------RDLAREIYNIKSYDIDENAFSNLMIIIKDSKDEFQTRYDINKAEWKD 173
Query: 204 DKVKLKKVVEYQYGRIPIDKNST-----TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSF 258
+K KL + E+ I +N+ T I ++ D + + +F ++I +SF
Sbjct: 174 NKWKLYGIREFVKVGRKIKENAYDVLDGTGIIKLEPDYIRTVMLSSKALNFTKLINWISF 233
Query: 259 SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF----SRSNQPRIIVAYGIFS 314
++ + L+ + L+ S ++ F + N + + I
Sbjct: 234 LKSEHLN----YSDALFDLLNRIFFSFRLMLL--SFTVGFIALALKKNIFILSLLNSIAF 287
Query: 315 GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ I I G L A+ I + +
Sbjct: 288 AVVYVISIVIFSFLADLGYLNIYVASSFTTIFFLII 323
>gi|225619709|ref|YP_002720966.1| permease YjgP/YjgQ [Brachyspira hyodysenteriae WA1]
gi|225214528|gb|ACN83262.1| permease YjgP/YjgQ [Brachyspira hyodysenteriae WA1]
Length = 417
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/205 (14%), Positives = 67/205 (32%), Gaps = 9/205 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I +Y + L +L +FVI L ++ + + +P
Sbjct: 1 MKKI-NKYIILETIGPFLAGIL-FFTFIFVIQLLPELIRLIVNNGAPLFMSLEVFVYMLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I IP L+ +I+ + L+ +E+++ RA+G ++ P ++ + IF++
Sbjct: 59 FNIAITIPMSILMASIIGYGRLSSDNEIIVMRALGFPHMRIYMPIIILGVFTFIFSLFFN 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
N I + LI + N + ++ +
Sbjct: 119 NVIMSESNYRYRALI-SYMVNIKPSIAVGKLEFSDIPDMGLSI---GSKYADDTSMSNVV 174
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK 205
++ A + N++
Sbjct: 175 IYDRSDTKRV---ITAKYGLWKNNE 196
Score = 66.8 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 267 NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
Y +F+ I IP + M LI A + + RS + + + Y +IT +
Sbjct: 321 PYFYYVEFHKFISIPAACLFMVLIGAPLGIVGKRSGK-GFGFGLSVIVVVIYYLLITAAE 379
Query: 327 SFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ P+ A P I+ ++ ++++
Sbjct: 380 LIAGGKKVSPLIAMWFPNIVLAAMGSFLMIR 410
>gi|145637645|ref|ZP_01793300.1| molybdate ABC transporter permease protein [Haemophilus influenzae
PittHH]
gi|145269168|gb|EDK09116.1| molybdate ABC transporter permease protein [Haemophilus influenzae
PittHH]
Length = 367
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 48/314 (15%), Positives = 110/314 (35%), Gaps = 24/314 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P +
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAAN-GNVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++++ K N ++ +N +FI +++ +
Sbjct: 121 SPWAIQKQVNIVEDAKANPTVGVLSSGQFISTNNNNVVLFI----DKIKDNQIRNVYLFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKM 234
+ + + A+ + + + LK + + D T +
Sbjct: 177 MTPQKQTKPSVVTAEKGELIALPNGDQVLNLKNTKRVEGTSVLPDFRITHFDEYRAYLGY 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ +++ A + ++I S S K+ + ++ I + L + M LIA +
Sbjct: 237 QAAENTNDEAAELTLSQLIDLDSSSAKA----------ELHWRITLILAVPLMALIAVPL 286
Query: 295 SLEFSRSNQPRIIV 308
S R + I+
Sbjct: 287 SRVNPRQGRFAKIL 300
>gi|255009764|ref|ZP_05281890.1| putative permease [Bacteroides fragilis 3_1_12]
gi|313147551|ref|ZP_07809744.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313136318|gb|EFR53678.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 634
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/193 (13%), Positives = 63/193 (32%), Gaps = 6/193 (3%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQ-MGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
+K+ L +G + I + + + + EL + S A ++ +P
Sbjct: 11 IIKSFLLLFVGTFFICLFIFMMQFLWKYVDELVGKGLEMSVLAQFFFYSALSLVPMSLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ +++ F N EL+ +A GIS+ +++ P +V + + N I +
Sbjct: 71 AVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNVIGPRAQA 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
L+ K + + + + ++ + + D
Sbjct: 131 KLGTLLISMKQKSPEVDIPEGVFYDEIDGYN---LKVQRKDRKTGMLYDVIIYDFSNNFD 187
Query: 190 IIHRKDADLAIIY 202
AD +
Sbjct: 188 NARIIVADSGRLE 200
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 1/102 (0%)
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
SF+ N R + +++ I I L + I A + R + V +
Sbjct: 352 WGFKSFTMAQNDLSIRRHKIEWHRKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSV 410
Query: 313 FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
F+ + Y I + G + + + L +
Sbjct: 411 FTFIIYYIIDNTGYKMARDGKWIVWMGMWMSSAILAPLGYFL 452
>gi|28868483|ref|NP_791102.1| hypothetical protein PSPTO_1272 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|301384649|ref|ZP_07233067.1| hypothetical protein PsyrptM_18512 [Pseudomonas syringae pv. tomato
Max13]
gi|302058898|ref|ZP_07250439.1| hypothetical protein PsyrptK_02842 [Pseudomonas syringae pv. tomato
K40]
gi|302133011|ref|ZP_07259001.1| hypothetical protein PsyrptN_16554 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28851721|gb|AAO54797.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
DC3000]
gi|330963184|gb|EGH63444.1| hypothetical protein PSYAC_00750 [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|331015232|gb|EGH95288.1| hypothetical protein PLA106_04717 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 375
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 58/368 (15%), Positives = 121/368 (32%), Gaps = 33/368 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+G+ + +
Sbjct: 61 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAALVGLLVAWLSFSL 120
Query: 124 ATSGEKIGIDLIQQW------------KDNGDKQKSDIIPWMQISNPQQD---IFIGAKK 168
A G LI Q + + + I ++S + +FI K+
Sbjct: 121 APQGAAQFSQLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKR 180
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ + T + +K ++ + + I+ N Y + D L
Sbjct: 181 MSNDKSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVVKYDTYGAAL 240
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
P + S F R+ + + I +PL + +T
Sbjct: 241 PKPEISEEITDREAIPTSELF--------------GNPAPRSVAELQWRISLPLSVFIVT 286
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+A +S + + + I I+ ++S + G L + I
Sbjct: 287 LMAIPLS-RVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWW--VHGI 343
Query: 349 SLSILILL 356
L I ++L
Sbjct: 344 YLGIGLVL 351
>gi|224438054|ref|ZP_03658993.1| hypothetical protein HcinC1_08770 [Helicobacter cinaedi CCUG 18818]
gi|313144499|ref|ZP_07806692.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313129530|gb|EFR47147.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 358
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 131/360 (36%), Gaps = 24/360 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L R+ YYLK L LG ID + ++ + S + + +
Sbjct: 2 LIRFVGFYYLKYFLIIFLGLEGFFLAIDTLKYIEELPD----SANLLILFLFYDGVFALT 57
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P ++ +I+ + ++S+L A+G S Q+L P ++ S LL + +
Sbjct: 58 YTLPISLVLCSIMFYMAFLKSSQLTALMALGYSKRQILAPLLLISSLLTAGFIGLNATPF 117
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG-AKKILPENHIWEDFTSIT 183
++ +I Q +I + + + Q IF+ + E T
Sbjct: 118 AYAKEYAESIIYQ-------NAQNIRENLLLKSGNQYIFLRKLYPLFNGEARAEGIKVFT 170
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP-IDKNSTTLNIPIKMD------- 235
+D+ + ++ +A+ A + LKK P + + + +++ +++
Sbjct: 171 LDENSNLVAYHEANEAFFEKNIWVLKKAKSVDITNSPTLGEKALDISLKEELEILKGFSS 230
Query: 236 -GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ ++ S + + + + N+ + + Y L+VIP + I A
Sbjct: 231 KVLETIAQDKPIASIVDAFASLKIAKRQNV-SSDKIRGILYGLLVIPFFVPLCIAIIAYY 289
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R +I I ++ + + +G++ P L+P + I ++ +
Sbjct: 290 IPSLPRYGNLTLISFVSIIVALAIWGVFYSLSQLSVAGLVYPEVGLLLP--MGILCAVFM 347
>gi|330938932|gb|EGH42431.1| permease YjgP/YjgQ [Pseudomonas syringae pv. pisi str. 1704B]
Length = 375
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 59/363 (16%), Positives = 122/363 (33%), Gaps = 23/363 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+G+ + +
Sbjct: 61 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS-- 181
A G LI Q + + ++P + K++ +
Sbjct: 121 APQGATQFSLLINQQ--DAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISE 178
Query: 182 --ITIDK-KNKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
++ DK K+ I A+ + + L+ Y D +
Sbjct: 179 KRMSSDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGA 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
M + SE+ R + + R+ + + I +PL + +TL+A
Sbjct: 239 MLPKPEISEEITDREAIPTSELI-------GDPAPRSVAELQWRISLPLSVFIVTLMAIP 291
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S + + + I I+ ++S + G L + I LSI
Sbjct: 292 LS-RVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWW--VHAIYLSIG 348
Query: 354 ILL 356
+LL
Sbjct: 349 LLL 351
>gi|117618567|ref|YP_858153.1| putative permease [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117559974|gb|ABK36922.1| putative permease [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 368
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 39/313 (12%), Positives = 110/313 (35%), Gaps = 21/313 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY F+ LKT L L +++ +I + + L +P +
Sbjct: 2 IVFRYLFRETLKTQLAVLFVLLLIFVSQQFIQIIGDAAD-GEVPTRLVSTLLLLNLPNMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + + L SE+ + A+G S ++ +V ++L +
Sbjct: 61 LLMLPISLFLAILFAHGRLYAESEMTVMHAVGFSHRFVMRSAMVLALLTAAVAAFNTGWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A ++ +I ++K + +M++ + + + + + + +
Sbjct: 121 APQAKEREYQVIDEFKADPGISFLQAGRFMEL--DKGRLVAYIQDLNDKGSKLQKIFVLQ 178
Query: 184 IDKKNKIIHRKDADLAIIYND----KV-KLKKVVEYQY---GRIPIDKNSTTLNIPIKMD 235
+ K A ++ D + LK Y+ R ++ I+
Sbjct: 179 RSQDGKPPSVVVATEGVVTVDSNGLQWLTLKDGSRYEGHFNTRQFQISEFDEYSLVIRQQ 238
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
++ + + A++ E++ + + + + + +PL ++ +T + ++
Sbjct: 239 EMERSNRKAAAKPTMELL----------GTQDNQLMAELQWRLSLPLSILVLTFLVVPLA 288
Query: 296 LEFSRSNQPRIIV 308
R + ++
Sbjct: 289 RVNPRQGRYAKLL 301
>gi|66044343|ref|YP_234184.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae B728a]
gi|302188386|ref|ZP_07265059.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae 642]
gi|63255050|gb|AAY36146.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae B728a]
gi|330899517|gb|EGH30936.1| permease YjgP/YjgQ [Pseudomonas syringae pv. japonica str.
M301072PT]
gi|330950946|gb|EGH51206.1| permease YjgP/YjgQ [Pseudomonas syringae Cit 7]
gi|330969234|gb|EGH69300.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 375
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 59/363 (16%), Positives = 122/363 (33%), Gaps = 23/363 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+G+ + +
Sbjct: 61 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS-- 181
A G LI Q + + ++P + K++ +
Sbjct: 121 APQGATQFSLLINQQ--DAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISE 178
Query: 182 --ITIDK-KNKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
++ DK K+ I A+ + + L+ Y D +
Sbjct: 179 KRMSSDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGA 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
M + SE+ R + + R+ + + I +PL + +TL+A
Sbjct: 239 MLPKPEISEEITDREAIPTSELI-------GNPAPRSVAELQWRISLPLSVFIVTLMAIP 291
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S + + + I I+ ++S + G L + I LSI
Sbjct: 292 LS-RVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWW--VHAIYLSIG 348
Query: 354 ILL 356
+LL
Sbjct: 349 LLL 351
>gi|13476526|ref|NP_108096.1| hypothetical protein mll7866 [Mesorhizobium loti MAFF303099]
gi|14027287|dbj|BAB54241.1| mll7866 [Mesorhizobium loti MAFF303099]
Length = 400
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 53/331 (16%), Positives = 116/331 (35%), Gaps = 23/331 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + L L+ + +V+ + + + + S++ +AA +P I
Sbjct: 2 KVVERYIMRRAFVVFLAALVWTLAIVWTTQVLAKIDLVTDSGQSSLTF-FEVAALILPSI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I ++PF +V +N SELV+ A G S W ++ P ++ ++ +F+ V N
Sbjct: 61 IPIVVPFALVVAVAQTLSVMNSDSELVVVNAAGASRWTIVRPIMLLALAASVFSFAVDNG 120
Query: 123 IATSGEKIGIDLIQQWKD--------NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
I + L+ Q + G +K + ++QI D +G I +
Sbjct: 121 IDPYARQKNRALVAQSRADLLSLIIQEGTFRKIEDGLFLQIGERLPDNRLG--GIFVADS 178
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
E + K ++ R + ++ + + + G + + + ++
Sbjct: 179 REEGVNLVYYAKTGSVVERGGEKVLMMNDGVIH----RKTLTGDLSVIRFTSYAFDMSAF 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + + ++K + + L + LIA +V
Sbjct: 235 MAAASEVTLLPKDQTTQYLLNPNVNDKLYQQAPQQYRAEIDQRFSEWLYSMVFALIALAV 294
Query: 295 -----SLEFSRSNQPRIIVAYGIF---SGFM 317
S +R N + +F GF
Sbjct: 295 AGDARSHREARVNPLITAITISLFVRWLGFF 325
>gi|220925665|ref|YP_002500967.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
2060]
gi|219950272|gb|ACL60664.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
2060]
Length = 388
Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats.
Identities = 46/300 (15%), Positives = 105/300 (35%), Gaps = 24/300 (8%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ L L L G +++V + + ++ ++ +P ++
Sbjct: 4 IERYIFRIALSAFLACLAGLTGVIWVTQALRELDLITAKGQ-TLLIFFLITGLSIPALLT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ P + + LN SEL++ A G+S L+ PF+ ++++G+ + +
Sbjct: 63 IVAPVALFMAVLHALNRLNGDSELIVMSAAGMSPRHLMRPFLTLALIVGLAVAFLTIQVL 122
Query: 125 TSGEKIGIDLIQQ----------WKDNGDKQKSDIIPWMQISNPQQD---IFIGAKKILP 171
S + DL+ + + S I + P IF+ ++
Sbjct: 123 PSSFQELRDLLTRVRGDFIANVVQEGQFTSLDSGITFHFRERGPGGTLLGIFMQDRREAG 182
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+ ++ +D + + I+ + + + R +D + T P
Sbjct: 183 RSVVYLAERGQAVDLDGQTYLVLE--KGSIHRQQPNSRDASIITFARYAVDLAAFT---P 237
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
D K E+ ++ + + + R + + + L +AM LIA
Sbjct: 238 PDTDTVYKPRERSTAQLLFPDPNEHYYKLVKG-----RFRAELHDRLTAWLYPLAMALIA 292
>gi|90408708|ref|ZP_01216857.1| putative permease [Psychromonas sp. CNPT3]
gi|90310190|gb|EAS38326.1| putative permease [Psychromonas sp. CNPT3]
Length = 365
Score = 83.4 bits (205), Expect = 6e-14, Method: Composition-based stats.
Identities = 48/366 (13%), Positives = 117/366 (31%), Gaps = 32/366 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K+ L +++ I Q + L +P +
Sbjct: 2 ILRRYLMLETFKSQFGILFVLLLIFVSQKFIAILEQAIN-GVIAPDLVLTLLYLNLPTLG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + + L+ SE+V + G S +L ++ S F +
Sbjct: 61 TLMLPISFYLAILFAHGRLHSESEMVAMTSCGYSPNSVLKATLLLSFFTFAFASFNSLYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF--TS 181
A S E I +I++ + + + + S + +K E E +
Sbjct: 121 APSAENEMIAVIEKAESDAGVATLIEGRFHKSSENGG--VVYVEKYH-EGQKLERIFASY 177
Query: 182 ITIDKK----------NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
D+ + ++D + + + V E+++ +
Sbjct: 178 WPSDENKAPSVITALHGSVQEKEDGTWLTLEDGQSYTGNVGEHEFDSSRFSSYEVHIANR 237
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ S S + + ++ + + + IPL ++ +T +A
Sbjct: 238 EIRSRSRGVSALPTSILLTQ--------------TDDKSRAELQWRMAIPLSILLLTFMA 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
++ R + ++ + + +++ KS + G L P+ + I+ +
Sbjct: 284 VPLAKVNPRQGRYAKLM-PALALYLTYFLLLSTSKSLIEEGTL-PILSIWGVQIVFLLGG 341
Query: 352 ILILLQ 357
+ + L+
Sbjct: 342 VFLHLK 347
>gi|265765250|ref|ZP_06093525.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263254634|gb|EEZ26068.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 636
Score = 83.4 bits (205), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/193 (13%), Positives = 63/193 (32%), Gaps = 6/193 (3%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQ-MGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
+K+ L +G + I + + + + EL + S A ++ +P
Sbjct: 11 IIKSFLLLFVGTFFICLFIFMMQFLWKYVDELVGKGLEMSVLAQFFFYSALSLVPMSLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ +++ F N EL+ +A GIS+ +++ P +V + + N I +
Sbjct: 71 AVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNVIGPQAQA 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
L+ K + + + + ++ + + D
Sbjct: 131 KLGTLLISMKQKSPEVDIPEGVFYDEIDGYN---LKVQRKDRKTGMLYDVIIYDFSNNFD 187
Query: 190 IIHRKDADLAIIY 202
AD +
Sbjct: 188 NARIIVADSGRLE 200
Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 6/151 (3%)
Query: 204 DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN 263
D +K+++ Y + + +T +N + +E +S SF+ N
Sbjct: 308 DTLKMQEAQIRDYNVDSLFEAATLMNKQKIIASAVGRTENLSSD-----WGFKSFTMTQN 362
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
F + + +++ I I L + I A + R + V + + + Y I
Sbjct: 363 DFSIRKHKIEWHRKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLTFIIYYIIDN 421
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ G + + + L +
Sbjct: 422 TGYKMARDGKWIVWMGMWMSSAILAPLGYFL 452
>gi|222823976|ref|YP_002575550.1| permease, YjgP/YjgQ family [Campylobacter lari RM2100]
gi|222539198|gb|ACM64299.1| putative permease, YjgP/YjgQ family [Campylobacter lari RM2100]
Length = 341
Score = 83.4 bits (205), Expect = 6e-14, Method: Composition-based stats.
Identities = 57/357 (15%), Positives = 128/357 (35%), Gaps = 33/357 (9%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++++Y F +L T L +V ++ ++ ++ S+ L +P
Sbjct: 2 KLIYKYLFNQFLNTMLSLFFTLFTIVSIVFFIQLA-KITSYVEISLLELFQLYIYLLPKA 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P + + F+ L+R +E + A+GIS + + F+ + +L F ++V+
Sbjct: 61 LAFTLPISFFIALTLSFYRLSRENESTVLFALGISPKFIASFFMKIAGVLSAFMLVVVLV 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
++ + + K + + + + +FI EN+++++
Sbjct: 121 FIPISFELFDNFVDYKKIS--TKINIKTGEFGQRYGEWLVFIN---TQDENNVYKNIIMY 175
Query: 183 TIDKKNKIIHRKD-ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
K + A + N + V+ ++N + + + +S
Sbjct: 176 HPKKNEDDKEQIILASEGKLENQNGIVSFVLNQGKAYEFKEENWHISSFKNLLIKSKLYS 235
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ ++ FY+ ++ S + E Y LI L +A L A S + R
Sbjct: 236 KDLNTKHFYDYWSDLNTSKEKAK------EFVIYTLIA--LFPLASVLFALSFGIVTYRY 287
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL-----LPVAAALIPVILTISLSIL 353
+ GF + I F +L P+ A + IL +S+S
Sbjct: 288 EK-----------GFAYFGI--FAVIFAYFTLLVSFYKPPLLAVGVIFILFLSISAF 331
>gi|253564060|ref|ZP_04841517.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|251947836|gb|EES88118.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|301161640|emb|CBW21180.1| putative permease [Bacteroides fragilis 638R]
Length = 636
Score = 83.0 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/193 (13%), Positives = 63/193 (32%), Gaps = 6/193 (3%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQ-MGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
+K+ L +G + I + + + + EL + S A ++ +P
Sbjct: 11 IIKSFLLLFVGTFFICLFIFMMQFLWKYVDELVGKGLEMSVLAQFFFYSALSLVPMSLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ +++ F N EL+ +A GIS+ +++ P +V + + N I +
Sbjct: 71 AVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNVIGPQAQA 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
L+ K + + + + ++ + + D
Sbjct: 131 KLGTLLISMKQKSPEVDIPEGVFYDEIDGYN---LKVQRKDRKTGMLYDVIIYDFSNNFD 187
Query: 190 IIHRKDADLAIIY 202
AD +
Sbjct: 188 NARIIVADSGRLE 200
Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 6/151 (3%)
Query: 204 DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN 263
D +K+++ Y + + +T +N + +E +S SF+ N
Sbjct: 308 DTLKMQEAQIRDYNVDSLFEAATLMNKQKIIASAVGRTENLSSD-----WGFKSFTMTQN 362
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
F + + +++ I I L + I A + R + V + + + Y I
Sbjct: 363 DFSIRKHKIEWHRKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLTFIIYYIIDN 421
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ G + + + L +
Sbjct: 422 TGYKMARDGKWIVWMGMWMSSAILAPLGYFL 452
>gi|319956049|ref|YP_004167312.1| permease yjgp/yjgq family protein [Nitratifractor salsuginis DSM
16511]
gi|319418453|gb|ADV45563.1| permease YjgP/YjgQ family protein [Nitratifractor salsuginis DSM
16511]
Length = 372
Score = 83.0 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 54/356 (15%), Positives = 120/356 (33%), Gaps = 30/356 (8%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y ++YLK L L+G + V ID + ++ + +R + A ++ I
Sbjct: 10 YIARHYLKNFLILLIGLSLAVVFIDFLQQAQRL----HGGANRKILYAFYTWEYMVALIY 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ + + V + G Q+L PF+ +L+ + + G
Sbjct: 66 PLVILMAMAWTQISFIYRNVFVSLFSFGFGRRQILIPFLASGVLIYLVFTGLQMTSFAYG 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ ++ + D F+ A ++ P + + KK
Sbjct: 126 QDRARMILHADRYKDALNNLFFKY--------NDSFVYASRLDPLHKALLRGMIFEV-KK 176
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQ---------YGRIPIDKNSTTLNIPIKMDGFQ 238
N+++ D A ++ + + + G + + L + F+
Sbjct: 177 NQVVRTLRFDEARFHDGEWIAPRALVRSKRFDTEGELTGFEDKELKNMILLKGYRPKVFR 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI---AASVS 295
K E + S + + + K + + Y ++ PL +AM +I +
Sbjct: 237 KIYEG-GTFSLVDSLAAL-HLLKKQGLSADKVKAILYNKVLTPLFALAMMVIFFYRTPLY 294
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
F R Q + + L + G +G++ P +P+++ I +
Sbjct: 295 HRFVRKEQLWTALLGSALLTWALLFA---LFRLGMNGVIDPDLGQTLPILILILYA 347
>gi|113971161|ref|YP_734954.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-4]
gi|117921444|ref|YP_870636.1| permease YjgP/YjgQ family protein [Shewanella sp. ANA-3]
gi|113885845|gb|ABI39897.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-4]
gi|117613776|gb|ABK49230.1| permease YjgP/YjgQ family protein [Shewanella sp. ANA-3]
Length = 370
Score = 83.0 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 54/364 (14%), Positives = 138/364 (37%), Gaps = 28/364 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + LK + L + + I + + S A L +P ++
Sbjct: 2 IVFRYLIREVLKAQIAVLFVLLTIFISQHFVRILADASD-GEFPASLIATLIGLNLPYLV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + +E+VI +G+S W + ++ +++ +FT + +
Sbjct: 61 VLVLPLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E+ ++++ + + ++P + ++I +N + + F +
Sbjct: 121 APWAEEQQNQVLEKAQSEAGLAALVQGRF--QASPNGRAVLFVERIGKDNDLDKVFVAQL 178
Query: 184 IDKKNKI--IHRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTL-----NIP 231
D ++I + A + + +++L V YQ P K+ + +
Sbjct: 179 PDPNDEIGLTNVVVAKGGRVLEDQNGSQQLQLNDGVRYQ--GSPQQKDYQMIEFGGYKMQ 236
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
IK + + ++ E++K A +F++ + IPL + MTLIA
Sbjct: 237 IKEQQVDERRRKLSALPLTELMK----------VEGPEAVAEFHWRLAIPLAIPIMTLIA 286
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
++ R + + + + ++ + + G++ + + +
Sbjct: 287 VPLARVNVRQGKFAKM-LPAVLLYLGYFGLMVAGRKALQDGVIPQYLGMWWIHLSALIMG 345
Query: 352 ILIL 355
IL+L
Sbjct: 346 ILLL 349
>gi|213968383|ref|ZP_03396527.1| membrane protein [Pseudomonas syringae pv. tomato T1]
gi|213927021|gb|EEB60572.1| membrane protein [Pseudomonas syringae pv. tomato T1]
Length = 378
Score = 83.0 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 58/368 (15%), Positives = 121/368 (32%), Gaps = 33/368 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 5 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFLIMGFRLPGFL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+G+ + +
Sbjct: 64 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAALVGLLVAWLSFSL 123
Query: 124 ATSGEKIGIDLIQQW------------KDNGDKQKSDIIPWMQISNPQQD---IFIGAKK 168
A G LI Q + + + I ++S + +FI K+
Sbjct: 124 APQGAAQFSQLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKR 183
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ + T + +K ++ + + I+ N Y + D L
Sbjct: 184 MSNDKSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVVKYDTYGAAL 243
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
P + S F R+ + + I +PL + +T
Sbjct: 244 PKPEISEEITDREAIPTSELF--------------GNPAPRSVAELQWRISLPLSVFIVT 289
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+A +S + + + I I+ ++S + G L + I
Sbjct: 290 LMAIPLS-RVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWW--VHGI 346
Query: 349 SLSILILL 356
L I ++L
Sbjct: 347 YLGIGLVL 354
>gi|16763279|ref|NP_458896.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|29144758|ref|NP_808100.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|62182905|ref|YP_219322.1| putative permease [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161617773|ref|YP_001591738.1| hypothetical protein SPAB_05636 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167551265|ref|ZP_02345020.1| putative permease [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|168232819|ref|ZP_02657877.1| putative permease [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168234609|ref|ZP_02659667.1| putative permease [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168244032|ref|ZP_02668964.1| putative permease [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|168262478|ref|ZP_02684451.1| putative permease [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|168821096|ref|ZP_02833096.1| putative permease [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|194445077|ref|YP_002043718.1| putative permease [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194450320|ref|YP_002048502.1| permease [Salmonella enterica subsp. enterica serovar Heidelberg
str. SL476]
gi|194468992|ref|ZP_03074976.1| putative permease [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194736994|ref|YP_002117399.1| putative permease [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197250300|ref|YP_002149398.1| putative permease [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197262941|ref|ZP_03163015.1| putative permease [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|198242439|ref|YP_002218342.1| putative permease [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|200386849|ref|ZP_03213461.1| putative permease [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204927295|ref|ZP_03218497.1| putative permease [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205355210|ref|YP_002229011.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207859604|ref|YP_002246255.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|213022334|ref|ZP_03336781.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
gi|213427635|ref|ZP_03360385.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213618569|ref|ZP_03372395.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213650368|ref|ZP_03380421.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|238910634|ref|ZP_04654471.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|289824526|ref|ZP_06544085.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhi str. E98-3139]
gi|25309681|pir||AF1061 probable inner membrane protein STY4817 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16505587|emb|CAD06939.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29140397|gb|AAO71960.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|62130538|gb|AAX68241.1| putative permease [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161367137|gb|ABX70905.1| hypothetical protein SPAB_05636 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403740|gb|ACF63962.1| putative permease [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194408624|gb|ACF68843.1| putative permease, YjgP/YjgQ family [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194455356|gb|EDX44195.1| putative permease [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194712496|gb|ACF91717.1| putative permease [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197214003|gb|ACH51400.1| putative permease [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197241196|gb|EDY23816.1| putative permease [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197291917|gb|EDY31267.1| putative permease [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|197936955|gb|ACH74288.1| putative permease [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|199603947|gb|EDZ02492.1| putative permease [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204323960|gb|EDZ09155.1| putative permease [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205274991|emb|CAR40065.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205323849|gb|EDZ11688.1| putative permease [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205332944|gb|EDZ19708.1| putative permease [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|205337037|gb|EDZ23801.1| putative permease [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|205342368|gb|EDZ29132.1| putative permease [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|205348722|gb|EDZ35353.1| putative permease [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|206711407|emb|CAR35786.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|320088910|emb|CBY98668.1| Lipopolysaccharide export system permease protein lptF [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|322615642|gb|EFY12562.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322618702|gb|EFY15591.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322621885|gb|EFY18735.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322627610|gb|EFY24401.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322630916|gb|EFY27680.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322637865|gb|EFY34566.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322642323|gb|EFY38929.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322643902|gb|EFY40450.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322651022|gb|EFY47407.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322656725|gb|EFY53013.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322659851|gb|EFY56094.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322661938|gb|EFY58154.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322666314|gb|EFY62492.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322672733|gb|EFY68844.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322676163|gb|EFY72234.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322680647|gb|EFY76685.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322684459|gb|EFY80463.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|322717408|gb|EFZ08979.1| putative permease [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
gi|323194204|gb|EFZ79401.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323197349|gb|EFZ82489.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323201533|gb|EFZ86597.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323206047|gb|EFZ91009.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|323213058|gb|EFZ97860.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323215429|gb|EGA00173.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323219413|gb|EGA03898.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323227717|gb|EGA11871.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323228887|gb|EGA13016.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323236501|gb|EGA20577.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323239998|gb|EGA24045.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323241955|gb|EGA25984.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323247896|gb|EGA31833.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323251466|gb|EGA35337.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323258168|gb|EGA41845.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323263686|gb|EGA47207.1| putative permease [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323265718|gb|EGA49214.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323270162|gb|EGA53610.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|326630368|gb|EGE36711.1| putative permease [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
Length = 366
Score = 83.0 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 66/363 (18%), Positives = 129/363 (35%), Gaps = 31/363 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + K N + Q +N +FI + + D
Sbjct: 121 GPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFI----ESVDGSDFHDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
I K AD + + V L K ++ + D T + G
Sbjct: 177 IRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGH 236
Query: 238 QKF------SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
Q ++Q R+ + N RA + ++ I + + M L+
Sbjct: 237 QAVALDPNDTDQMDMRTLWN-------------TDNDRARAELHWRITLVFTVFMMALMV 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+S+ R + + + + + + I T +KS G G L PV ++ ++L+
Sbjct: 284 VPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLALA 342
Query: 352 ILI 354
I +
Sbjct: 343 IGL 345
>gi|261855831|ref|YP_003263114.1| permease YjgP/YjgQ family protein [Halothiobacillus neapolitanus
c2]
gi|261836300|gb|ACX96067.1| permease YjgP/YjgQ family protein [Halothiobacillus neapolitanus
c2]
Length = 371
Score = 83.0 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 46/342 (13%), Positives = 117/342 (34%), Gaps = 35/342 (10%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY + TL L M L+ + +L + S + +
Sbjct: 2 PILNRYLLREASVATLGVTLIVM-LIMLANLLARSLSAAAEGSLPSSLIPAMMGFNAVKL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++P + + ++R SEL + RA G L + +I + + T +
Sbjct: 61 LIYVLPVGLFIGLMFALGRMSRDSELTVLRACGYGPRHLSQAILWLAIPVSLLTASISLF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ +++ +I + + + +++ + + ++IG+K +
Sbjct: 121 AYPALQQVQSRMIDSARSQQVFNQLPVGRFIEEPSGKAVLYIGSKSGNGYSD------IF 174
Query: 183 TIDKKNKIIHRKD------ADLAIIYND-----KVKLKKVVEYQYGRIPIDKNSTTLNIP 231
++ + + A + D V L++ Q D +
Sbjct: 175 AFNEPTNTKNARQKPGVEMAPFGKLMTDSAGHRYVVLEQGRRIQGVAGEQDWSVIDYQTH 234
Query: 232 IKMDGFQKFSEQFAS--RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ + +E +S +++ +++ +FY+ + L ++ + L
Sbjct: 235 EILVPGRADTENTQENKKSSLQLLHSNLPGDQA----------EFYYRLSQALTVLVLAL 284
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS 331
IA ++ RS + +F F+LY + + + ++
Sbjct: 285 IAVPLAQAKPRSGRYGR-----LFWAFLLYALYFNLIALTEN 321
>gi|53711884|ref|YP_097876.1| hypothetical protein BF0593 [Bacteroides fragilis YCH46]
gi|60680112|ref|YP_210256.1| putative permease [Bacteroides fragilis NCTC 9343]
gi|52214749|dbj|BAD47342.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
gi|60491546|emb|CAH06298.1| putative permease [Bacteroides fragilis NCTC 9343]
Length = 636
Score = 83.0 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/193 (13%), Positives = 63/193 (32%), Gaps = 6/193 (3%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQ-MGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
+K+ L +G + I + + + + EL + S A ++ +P
Sbjct: 11 IIKSFLLLFVGTFFICLFIFMMQFLWKYVDELVGKGLEMSVLAQFFFYSALSLVPMSLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ +++ F N EL+ +A GIS+ +++ P +V + + N I +
Sbjct: 71 AVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNVIGPQAQA 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
L+ K + + + + ++ + + D
Sbjct: 131 KLGTLLISMKQKSPEVDIPEGVFYDEIDGYN---LKVQRKDRKTGMLYDVIIYDFSNNFD 187
Query: 190 IIHRKDADLAIIY 202
AD +
Sbjct: 188 NARIIVADSGRLE 200
Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 6/151 (3%)
Query: 204 DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN 263
D +K+++ Y + + +T +N + +E +S SF+ N
Sbjct: 308 DTLKMQEAQIRDYNVDSLFEAATLMNKQKIIASAVGRTENLSSD-----WGFKSFTMTQN 362
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
F + + +++ I I L + I A + R + V + + + Y I
Sbjct: 363 DFSIRKHKIEWHRKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLTFIIYYIIDN 421
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ G + + + L +
Sbjct: 422 TGYKMARDGKWIVWMGMWMSSAILAPLGYFL 452
>gi|91204094|emb|CAJ71747.1| hypothetical protein kustc1002 [Candidatus Kuenenia
stuttgartiensis]
Length = 578
Score = 83.0 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 47/273 (17%), Positives = 100/273 (36%), Gaps = 32/273 (11%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY + + +T L IL+F+ + +I + + A+ A +P +
Sbjct: 52 NILQRYVIREWFQTFWPSFLCFEILMFLGFVIQIL-------HKGLDIIALKAL--IPHM 102
Query: 63 IQQIIPFIT----LVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
Q+ P+ L + + L+ E++ +A GI + +++ P +V I+ FT++
Sbjct: 103 FIQVAPYSIPSALLTATTLTYGRLSADREIIAIQASGIHLRKIITPVLVIGIIFSFFTLV 162
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ I I L+Q+ N ++ I+IG ++I +D
Sbjct: 163 LSAEILPRSLYQ-IKLLQERAINNILAGRLATFQKKVLMEPYQIYIG----NVVDNINKD 217
Query: 179 FTSITIDKKNKIIHRKDADLAIIYND------KVKLKKVVEYQYGRIPIDK-------NS 225
T I + + A+ I + + L+K + ++
Sbjct: 218 VTVIQY-ADDYVTDIIIAEEGSIEVNNEKNTIFLTLRKGEFIKPNYKKAEEVPRLGVFTE 276
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSF 258
TT IP+ D ++ ++ ++
Sbjct: 277 TTFEIPMGKDKADFSTKHMTIFQLFKYNNEIDR 309
Score = 42.9 bits (100), Expect = 0.077, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 8/148 (5%)
Query: 211 VVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR- 269
V+ + +NS T NI + + +E+ S +I S ++ R
Sbjct: 425 VISQRMIETREIQNSETNNIA-TLTKSLEETEKNISVLLRKITSFESDLTLASKKKLRRK 483
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYG-IFSGFMLYTIITIMKSF 328
+ + I L ++ +I + ++ RS+ I + F+ Y ++
Sbjct: 484 NDISIHKRISQALSCLSFIVIGIPLGIKL-RSSHLIIGFGVSFMIILFIYYPLMVTGSVL 542
Query: 329 GKSGILL--PVAAALIPVILTISLSILI 354
+L PV + + + I I
Sbjct: 543 ADDTLLPVVPVL--WGANGILLIVGICI 568
>gi|194333657|ref|YP_002015517.1| permease YjgP/YjgQ family protein [Prosthecochloris aestuarii DSM
271]
gi|194311475|gb|ACF45870.1| permease YjgP/YjgQ family protein [Prosthecochloris aestuarii DSM
271]
Length = 444
Score = 83.0 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/199 (14%), Positives = 68/199 (34%), Gaps = 5/199 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY K + L+ L + + + + + + + L ++ +
Sbjct: 2 KIVDRYILKAHAAPFLFAFLTIIFVFTLQFFSLFIARFVGK-GLDLLVISELILLQISWM 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P LV ++ F NL SE+ + R+ G+S+ +++ P ++ + +L N
Sbjct: 61 VVLAVPMAVLVSTLMAFGNLTNRSEIAVMRSGGLSMSRVILPVLIAASVLAFLVERFNNV 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ L++ + + I + I P++ T
Sbjct: 121 VLPEANYQAKMLLRDITKTKPSFGLTENAFSSFIDGYS---ILVRDIDPDSGELRGVTIY 177
Query: 183 TIDKKNKIIHRKDADLAII 201
+ + A+ I
Sbjct: 178 EGTRDD-YSTVITAETGSI 195
Score = 56.4 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 12/131 (9%), Positives = 44/131 (33%), Gaps = 10/131 (7%)
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+ S +L + ++ E+ + I ++S + + +++ +
Sbjct: 308 LRSKSLSLRRSLALERVDGMLEELDAS-----IDRISADRRMY----NKYMVEYHKKYAL 358
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ L+ A + + ++ + + + + ++ + + +L P A
Sbjct: 359 SFACIIFVLVGAPLGV-LAKRGGFGVGAGLALAFFVLYWALLILGEHLADRNLLHPGFAM 417
Query: 341 LIPVILTISLS 351
+ IL +
Sbjct: 418 WLANILMAFIG 428
>gi|290473524|ref|YP_003466394.1| putative transmembrane protein, transport [Xenorhabdus bovienii
SS-2004]
gi|289172827|emb|CBJ79598.1| putative transmembrane protein, transport [Xenorhabdus bovienii
SS-2004]
Length = 366
Score = 83.0 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 47/353 (13%), Positives = 120/353 (33%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L E+ E + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVEVLGAAVE-GSVPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ L+ ++ ++ + +
Sbjct: 61 QLILPLSLFLGVLMTFSKLYTESEITVMHACGLGKGVLVKSALILALFTSMLAAANVLWF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K ++ K N + + ++ + + N +
Sbjct: 121 TPWSSKYQEQVLADAKANPSLAAIMEGQFK--PSRDGNMVLYIGDVKGNNFENVFLAQLR 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ AD + +V G + T L ++ F+ +
Sbjct: 179 PVNNQRPSVVI-ADGGHMEERP-NGNQVAVLHQG---VRYEGTALMRDFRITDFKNYQAV 233
Query: 244 FASRSFYEIIKKMSFSNKSNIFHN--YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
++ K+ S ++H + + ++ + + + ++ M L+ +S R
Sbjct: 234 IGHKAADIDSDKVEQKTFSQLWHKGDEDSRAELHWRLTLIVSVLVMALLVVPLSAVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + + ++S G G L P + +L++ +
Sbjct: 294 GRV-LSMLPAMLLYLIFFLLQSSLRSNGGRGKLDPAFWMWLVNGAYFALALAL 345
>gi|147673657|ref|YP_001217998.1| hypothetical protein VC0395_A2082 [Vibrio cholerae O395]
gi|262167531|ref|ZP_06035236.1| predicted permease [Vibrio cholerae RC27]
gi|146315540|gb|ABQ20079.1| putative membrane protein [Vibrio cholerae O395]
gi|227014390|gb|ACP10600.1| putative membrane protein [Vibrio cholerae O395]
gi|262023984|gb|EEY42680.1| predicted permease [Vibrio cholerae RC27]
Length = 366
Score = 83.0 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 111/344 (32%), Gaps = 19/344 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADVSD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + +P + I EN +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHF--QRSPDGSSVVFIDNI--ENRKLYNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ I+ D+ + + + + L Y+ +D T + + G
Sbjct: 177 LAPRDSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + ++ +++ RA+ + + I + + + +T++ +S
Sbjct: 237 REVKSAERDWEALPTLSLLNNADR-------RAQAELQWRISLVVCIPLLTMLVVPLSAV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
R + + I + ++ KS + G L +
Sbjct: 290 NPRQGRFAKM-GPAILIYLTYFLALSATKSAIEDGSLPVIIGLW 332
>gi|326797997|ref|YP_004315816.1| permease YjgP/YjgQ family protein [Sphingobacterium sp. 21]
gi|326548761|gb|ADZ77146.1| permease YjgP/YjgQ family protein [Sphingobacterium sp. 21]
Length = 505
Score = 83.0 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 40/214 (18%), Positives = 79/214 (36%), Gaps = 16/214 (7%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
FFK ++ T + ++L ++++ + + L I +P
Sbjct: 26 FFKPFIVTFFIVMFVLLMLFLFKYIDDLIGK-----GFEWYVILELLWYASAAQISMAMP 80
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L+ +I+ F NL + ELV +A GIS+ + + P ++ L+ I + + I
Sbjct: 81 LAMLLSSIMTFGNLGESYELVAIKAAGISLRKAMMPLIILVSLISIGSFFFSDYILPVTN 140
Query: 129 KIGIDLIQQWKD-NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
L+ ++ D D I I I AK + + +
Sbjct: 141 LKMGSLLYDVRNKKADFLIKDGIFNNSIPGYS----IRAKNKSKDGTVLYNLIIYQHGNI 196
Query: 188 NKIIHRKDADLAIIYNDK------VKLKKVVEYQ 215
++ + A ++YN + +KLK V Y+
Sbjct: 197 SRGTNVLLAKEGVMYNSRDNNYMILKLKDGVRYE 230
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 1/138 (0%)
Query: 217 GRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYF 276
G + S IP+ + R E++ + S+K R +++
Sbjct: 328 GALKNYNKSFEEIIPVDKRVVAVNNSLNDIRYIKEVLDMKAKSDKDFDLSIVRYILEYHK 387
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
+ + + + I A + R + V I + + I T+ + K G + P
Sbjct: 388 KFTLAVSCLLLFSIGAPLGA-IIRKGGLGLPVVMAIIFFLIYHIISTVAEKSAKEGNIDP 446
Query: 337 VAAALIPVILTISLSILI 354
V +I L I +
Sbjct: 447 VLGTWTAIIALTPLGIFL 464
>gi|109948225|ref|YP_665453.1| hypothetical protein Hac_1758 [Helicobacter acinonychis str.
Sheeba]
gi|109715446|emb|CAK00454.1| conserved hypothetical protein [Helicobacter acinonychis str.
Sheeba]
Length = 355
Score = 83.0 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 56/359 (15%), Positives = 124/359 (34%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L P S+ V +
Sbjct: 59 YTLPISLLLAMVLFYITFIKSNQYTALLSIGFSKCQVLKPIFFISLFFTAIYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYDDDYVYFGKIDPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A+ A L Y + ++ L + F+
Sbjct: 171 -KDKTLESYAEANEAFFEGKHWTLHDATIYSLPLNFDLGNNALSAMHLETFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A + + + + + Y ++P + +++ A
Sbjct: 230 VLDTIYQNKPAVSIMDALFSLHALVRQKA--DTKKVRSFLYVFAILPFFVPFLSVFIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L+P L + +S+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPELGVLLPFFLFLIISLW 346
>gi|85060086|ref|YP_455788.1| putative transport protein [Sodalis glossinidius str. 'morsitans']
gi|84780606|dbj|BAE75383.1| putative transport protein [Sodalis glossinidius str. 'morsitans']
Length = 366
Score = 83.0 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 48/368 (13%), Positives = 123/368 (33%), Gaps = 41/368 (11%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ L L +++ F L I + + + L VP +
Sbjct: 2 IITRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + SE+ + A G+ L+ ++ S++ I V+ + +
Sbjct: 61 QLILPLSLFMGLLMTLSRMYTESEITVMHACGLGKSILIRAALLLSLITAILAVVNVVWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG-----------AKKILPE 172
+ + ++ + K N + N +F+G ++ P
Sbjct: 121 SPWSSRHQDLVMSEAKANPSMAALVEGQFKPAENGNSVLFVGNVKDKGFEHVFLAQLKPN 180
Query: 173 NHIWEDFTSITIDKKNKIIHRKDA------DLAIIYNDKVKLKKVVEYQYGRIPIDKNST 226
+ I + + R D D Y L+ + T
Sbjct: 181 GNARPSVV---IADRGHMSQRPDGSQLVMLDKGTRYEGTALLRDFRITDF---------T 228
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
I S ++ + ++ + ++ + + ++
Sbjct: 229 QYQAVIGRRAVAVDGTDAEQMSLRQLWRSPEPEARA----------ELHWRFTLVVSVLI 278
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
M ++ +S+ R + + + + + + + T ++S G G L P+ + +
Sbjct: 279 MAMMVVPLSVVNPRQGRV-LSMLPAMLLYLIFFLLQTSLRSNGAKGKLDPMLWMWLTNVA 337
Query: 347 TISLSILI 354
++L++++
Sbjct: 338 YLALALVL 345
>gi|71738034|ref|YP_273425.1| hypothetical protein PSPPH_1158 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257487386|ref|ZP_05641427.1| hypothetical protein PsyrptA_29203 [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|289623815|ref|ZP_06456769.1| hypothetical protein PsyrpaN_01510 [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289649166|ref|ZP_06480509.1| hypothetical protein Psyrpa2_15674 [Pseudomonas syringae pv.
aesculi str. 2250]
gi|298485819|ref|ZP_07003897.1| Putative membrane protein [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|71558587|gb|AAZ37798.1| membrane protein, putative [Pseudomonas syringae pv. phaseolicola
1448A]
gi|298159643|gb|EFI00686.1| Putative membrane protein [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|320322888|gb|EFW78979.1| hypothetical protein PsgB076_20537 [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329803|gb|EFW85791.1| hypothetical protein PsgRace4_11121 [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330867846|gb|EGH02555.1| hypothetical protein PSYAE_11461 [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330989713|gb|EGH87816.1| hypothetical protein PLA107_32136 [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331009018|gb|EGH89074.1| hypothetical protein PSYTB_04815 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 375
Score = 83.0 bits (204), Expect = 8e-14, Method: Composition-based stats.
Identities = 58/363 (15%), Positives = 122/363 (33%), Gaps = 23/363 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+G+ + +
Sbjct: 61 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS-- 181
A G LI + + + ++P + K++ +
Sbjct: 121 APQGATQFSLLINKQ--DAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISE 178
Query: 182 --ITIDK-KNKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
++ DK K+ I A+ + + L+ Y D +
Sbjct: 179 KRMSGDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGA 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
M + SE+ R + + R+ + + I +PL + +TL+A
Sbjct: 239 MLPKPEISEEITDREAIPTSELI-------GNPAPRSVAELQWRISLPLSVFIVTLMAIP 291
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S + + + I I+ ++S + G L + I LSI
Sbjct: 292 LS-RVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWW--VHGIYLSIG 348
Query: 354 ILL 356
+LL
Sbjct: 349 LLL 351
>gi|329114705|ref|ZP_08243463.1| Permease YjgP/YjgQ Family Protein [Acetobacter pomorum DM001]
gi|326695971|gb|EGE47654.1| Permease YjgP/YjgQ Family Protein [Acetobacter pomorum DM001]
Length = 411
Score = 82.6 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 68/370 (18%), Positives = 135/370 (36%), Gaps = 24/370 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
PG L RY + L L MI + + L + N + N+ +LAA +P
Sbjct: 32 PGTLDRYLIAQVMPPFLVALSVVMIALILERLLVLFNLLAAGNNHIGIFIGLLAAL-LPH 90
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ IP V V +++ E+ + G+S+ ++ P++ ++LGI + L+
Sbjct: 91 YLGLAIPAALCVAVFTVIRRMSQNEEIDAINSSGLSLLRITRPYIQLGVILGILSFLLYG 150
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I G + + ++P + I A K+ E+
Sbjct: 151 FIQPHARYDFRSTFYIASHTGWAPRLQPRMF---ASPSSQLTIVADKVSQSGSDLENVFI 207
Query: 182 ITIDKKNKIIHRKDADLAIIYND------KVKLK-KVVEYQYGR-----IPIDKNSTTLN 229
+ ++ + A I ++ L V+ G + D ++ L
Sbjct: 208 RDLSEQQE--RDITARNGHIRIGLDGETVEIDLTHGVIVTDKGDGVPSLVTFDHSTRYLT 265
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ F+ E + E++ ++ + S + R+E F + L + + L
Sbjct: 266 HASHVSPFRTRGEDERELTSPELVGRLIRHDPSISRPHMRSEVHF--RMARSLTVPFIPL 323
Query: 290 IAASVS-LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+AAS++ + + N + +A+ I GF II S + + P ++ I
Sbjct: 324 LAASLALMRKRQRNNAGLPLAFIIMVGFDH--IIQFGHSMVATKKASLLL-IWGPSLVFI 380
Query: 349 SLSILILLQK 358
L+LL K
Sbjct: 381 VGCTLLLLYK 390
>gi|15642496|ref|NP_232129.1| hypothetical protein VC2500 [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|153215710|ref|ZP_01950091.1| membrane protein, putative [Vibrio cholerae 1587]
gi|153822404|ref|ZP_01975071.1| membrane protein, putative [Vibrio cholerae B33]
gi|153831206|ref|ZP_01983873.1| putative membrane protein [Vibrio cholerae 623-39]
gi|227082619|ref|YP_002811170.1| hypothetical protein VCM66_2422 [Vibrio cholerae M66-2]
gi|229507442|ref|ZP_04396947.1| hypothetical protein VCF_002671 [Vibrio cholerae BX 330286]
gi|229509633|ref|ZP_04399114.1| hypothetical protein VCE_001033 [Vibrio cholerae B33]
gi|229516758|ref|ZP_04406204.1| hypothetical protein VCC_000775 [Vibrio cholerae RC9]
gi|229521565|ref|ZP_04410983.1| hypothetical protein VIF_002101 [Vibrio cholerae TM 11079-80]
gi|229606948|ref|YP_002877596.1| hypothetical protein VCD_001857 [Vibrio cholerae MJ-1236]
gi|254291418|ref|ZP_04962210.1| membrane protein, putative [Vibrio cholerae AM-19226]
gi|254851045|ref|ZP_05240395.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255744521|ref|ZP_05418473.1| putative membrane protein [Vibrio cholera CIRS 101]
gi|297581347|ref|ZP_06943270.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|298500669|ref|ZP_07010473.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
gi|9657081|gb|AAF95642.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|124114628|gb|EAY33448.1| membrane protein, putative [Vibrio cholerae 1587]
gi|126520047|gb|EAZ77270.1| membrane protein, putative [Vibrio cholerae B33]
gi|148873313|gb|EDL71448.1| putative membrane protein [Vibrio cholerae 623-39]
gi|150422608|gb|EDN14563.1| membrane protein, putative [Vibrio cholerae AM-19226]
gi|227010507|gb|ACP06719.1| putative membrane protein [Vibrio cholerae M66-2]
gi|229341159|gb|EEO06163.1| hypothetical protein VIF_002101 [Vibrio cholerae TM 11079-80]
gi|229345821|gb|EEO10793.1| hypothetical protein VCC_000775 [Vibrio cholerae RC9]
gi|229353107|gb|EEO18046.1| hypothetical protein VCE_001033 [Vibrio cholerae B33]
gi|229354947|gb|EEO19868.1| hypothetical protein VCF_002671 [Vibrio cholerae BX 330286]
gi|229369603|gb|ACQ60026.1| hypothetical protein VCD_001857 [Vibrio cholerae MJ-1236]
gi|254846750|gb|EET25164.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255738046|gb|EET93439.1| putative membrane protein [Vibrio cholera CIRS 101]
gi|297534185|gb|EFH73023.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297540838|gb|EFH76895.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
Length = 366
Score = 82.6 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 110/344 (31%), Gaps = 19/344 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + +P + I EN +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHF--QRSPDGSSVVFIDNI--ENRKLYNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ I+ D+ + + + + L Y+ +D T + + G
Sbjct: 177 LAPRDSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + ++ +++ RA+ + + I + + + +T++ +S
Sbjct: 237 REVKSAERDWEALPTLSLLNNADR-------RAQAELQWRISLVVCIPLLTMLVVPLSAV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
R + + I + ++ KS + G L +
Sbjct: 290 NPRQGRFAKM-GPAILIYLTYFLALSATKSAIEDGSLPVIIGLW 332
>gi|229524483|ref|ZP_04413888.1| hypothetical protein VCA_002078 [Vibrio cholerae bv. albensis
VL426]
gi|229338064|gb|EEO03081.1| hypothetical protein VCA_002078 [Vibrio cholerae bv. albensis
VL426]
Length = 366
Score = 82.6 bits (203), Expect = 8e-14, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 111/344 (32%), Gaps = 19/344 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLAEASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + +P + I EN +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHF--QRSPDGSSVVFIDNI--ENRKLYNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ I+ D+ + + + + L Y+ +D T + + G
Sbjct: 177 LAPRDSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + ++ +++ RA+ + + I + + + +T++ +S
Sbjct: 237 REVKSAERDWEALPTLSLLNNADR-------RAQAELQWRISLVVCIPLLTMLVVPLSAV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
R + + I + ++ KS + G L +
Sbjct: 290 NPRQGRFAKM-GPAILIYLTYFLALSATKSAIEDGSLPVIIGLW 332
>gi|325983220|ref|YP_004295622.1| permease YjgP/YjgQ family protein [Nitrosomonas sp. AL212]
gi|325532739|gb|ADZ27460.1| permease YjgP/YjgQ family protein [Nitrosomonas sp. AL212]
Length = 358
Score = 82.6 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 47/334 (14%), Positives = 113/334 (33%), Gaps = 25/334 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAV--LAATRVP 60
++ RY + + L F + +IL+ + + ++ + L +
Sbjct: 2 KLIERYIAREIM---LPFTVVILILIGLFASFSSARLLAGAVTETLGIAGLIKLVFLKTL 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++ +IP + I+ LN+ EL + R++GIS +++ + +I +GI + ++
Sbjct: 59 IALEVLIPIALYISVIMGLGRLNKDQELNVIRSVGISGHRIVIAVLSVAIPVGIISGMLS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + L Q + + + + + + I + + ++
Sbjct: 119 SYVRPWAYGESYILDAQAEAELNTNRFQAGRFY--GSEKSGRVIYVRNKNEADKQMQNI- 175
Query: 181 SITIDKKNKIIHRKDADLA-----IIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
KK A A +D+ ++L + YQ T++
Sbjct: 176 -FHYIKKPDSSEIVIAKQAQQIKPTAEDDRPHIQLSEGTIYQL---------TSIASTDD 225
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ F+K + +K + + R + + I PL V + LIA +
Sbjct: 226 VIQFKKMIYFIDNDFVTNYRRKAAATRTLWESDVPRDIAELQWRISRPLATVLLALIALT 285
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R ++ Y + + K+
Sbjct: 286 FIHTAPRQDKTEKTYLIAALVFAAYYNLSGLAKT 319
>gi|298372198|ref|ZP_06982188.1| permease [Bacteroidetes oral taxon 274 str. F0058]
gi|298275102|gb|EFI16653.1| permease [Bacteroidetes oral taxon 274 str. F0058]
Length = 490
Score = 82.6 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 34/201 (16%), Positives = 72/201 (35%), Gaps = 8/201 (3%)
Query: 1 MPGI--LWRYFFKYYLKT-TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT 57
M GI L Y + ++ + F + ++V + + MG+ I A
Sbjct: 1 MLGIKKLDLYVLRQFMTLLVVTFFISLFVIVMQFIWLRLDDMMGK--GIPIETMAKFFFY 58
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
+P L+ +++ F N+ EL+ + GIS+++++ ++ ++ I
Sbjct: 59 SSLAFTPMALPLAILLASLMTFGNMGERFELIAMKTAGISLFRIMRSLMIFIAMIVIGAF 118
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
N + +K L+ +KD K IP + + + I A+ +
Sbjct: 119 FYSNYVIPMAQKRMWTLVYSFKD---KALEIEIPVGEFYTGIRGVNIYARGRDTDKKAMT 175
Query: 178 DFTSITIDKKNKIIHRKDADL 198
+ K + AD
Sbjct: 176 NVMIYDFTKGFQSASVTAADT 196
>gi|206577932|ref|YP_002240777.1| putative permease [Klebsiella pneumoniae 342]
gi|206566990|gb|ACI08766.1| putative permease [Klebsiella pneumoniae 342]
Length = 365
Score = 82.6 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 57/369 (15%), Positives = 127/369 (34%), Gaps = 33/369 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L +P +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPTNLVLSLLGLGIPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ G + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLIKAAMILALFTGAVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + + + + + + + D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQF--QQASDGNAVMFIESVN--GNRFHDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ K AD + + V L K ++ + D T N + G
Sbjct: 177 LRPKGNARPSVVVADSGELSQQKDGSQVVTLNKGTRFEGTAMLRDFRITDFNNYQAIIGH 236
Query: 238 QKF------SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
Q +EQ R+ ++ H RA + ++ + + M L+
Sbjct: 237 QAVTSDPDDTEQMDMRTLWQ-------------THTDRARAELHWRFTLVATVFIMALMV 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+S+ R + + + + + + + T +KS G G + A + I + +
Sbjct: 284 VPLSVVNPRQGRV-LSMLPAMLLYLVFFLLQTSIKSNGGKGKMD--LAIWMWAINLLYFA 340
Query: 352 ILILLQKED 360
+ +LL D
Sbjct: 341 LAVLLNLWD 349
>gi|110833357|ref|YP_692216.1| hypothetical protein ABO_0496 [Alcanivorax borkumensis SK2]
gi|110646468|emb|CAL15944.1| membrane protein, putative [Alcanivorax borkumensis SK2]
Length = 368
Score = 82.6 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 49/332 (14%), Positives = 120/332 (36%), Gaps = 30/332 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + TT+ ++++ + + ++ A R+P +
Sbjct: 2 ILHRYINRQVFMTTVLVTFILVMVLVSGRFIKYL-AEAAAGQIAADALFLVMAFRMPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS----IWQLLNPFVVGSILLGIFTVLV 119
Q I+P V ++V ++ +E+V+ +A G + L+ P ++ ++L+G+F++ V
Sbjct: 61 QMIVPLSLYVALLLVLGRMHMDNEMVVLQAGGQGNGRVVRSLVVPILMATMLVGMFSLYV 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
G+ + ++ KD + + + A+ + E + E+
Sbjct: 121 ----TPRGDAEVNRIFEEQKDRSVLELLTPGRFHVKGSSDSQRATYAEHLNREKGVLENV 176
Query: 180 TS--ITIDKKNKIIHRKD--ADLAII--YND--KVKLKKVVEYQYGRIPIDKNS---TTL 228
+ + A + + + L ++YQ +D
Sbjct: 177 FVADARFESQGGAGRLLTVWAKSGKLVVEDGISYLLLTDGLQYQGKPGQLDYKEVGFKEA 236
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ I + + RS E++++ + + ++ + + I + L + M
Sbjct: 237 RVRIGGEKTDSRPPKVRGRSTQELMEQQADNKEA--------LAELQWRISLILTVPIMA 288
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
L A ++ R + ++ G+MLY
Sbjct: 289 LAAIPLARVNPRQGRFYRLIPA--VLGYMLYV 318
>gi|333029769|ref|ZP_08457830.1| permease YjgP/YjgQ family protein [Bacteroides coprosuis DSM 18011]
gi|332740366|gb|EGJ70848.1| permease YjgP/YjgQ family protein [Bacteroides coprosuis DSM 18011]
Length = 632
Score = 82.6 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 32/194 (16%), Positives = 72/194 (37%), Gaps = 6/194 (3%)
Query: 11 KYYLKTT-LYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAV--LAATRVPLIIQQII 67
K+ LK+ L F+ I +F+ + + + +L + + +I +
Sbjct: 9 KFVLKSFGLLFIATFFICLFIFMMQFLWRYVDDLVGKGLEMTVLGQFFFYSALTLIPASL 68
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P TL+ +++ F N EL+ +A GIS+++++ P ++ ++LL + + N I
Sbjct: 69 PLATLLASLITFGNFGERFELLAMKAAGISLFKIIRPLMILAVLLCGISFVFQNNIGPKA 128
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
L+ + + +IF+ K+ + + D +
Sbjct: 129 FSKLTTLLISIRQKSPELDIPEG-IFYDEIDGYNIFV--KEKDRKTGLLYDVIIYEFSEG 185
Query: 188 NKIIHRKDADLAII 201
AD +
Sbjct: 186 FDNARIIVADTGQL 199
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/110 (10%), Positives = 29/110 (26%), Gaps = 1/110 (0%)
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S K+ R ++ I + + I A + R
Sbjct: 345 DIESLATDWSFREVEVKNTDLQIRRHLMAWHEKITLSFACLVFFFIGAPLG-SIIRKGGL 403
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ V + + Y I T+ + G + + ++ + +
Sbjct: 404 GMPVVISVLIFIIYYIINTMGSKMAREGEWIVWIGMWMSTLILAPVGGFL 453
>gi|257487384|ref|ZP_05641425.1| hypothetical protein PsyrptA_29193 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 148
Score = 82.6 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 5/145 (3%)
Query: 213 EYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET 272
+ P+++ L+ P + E + + ++ SN R
Sbjct: 7 RTEVINTPVERWDVALS-PQLLSTVIMPPESLSISGLWNYAHYLADQGLSNG----RYWL 61
Query: 273 QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG 332
F+ ++ P + VA+ L+A S RS V G+ GF I ++
Sbjct: 62 AFWTKVLQPAVTVALVLMAISFIFGPLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLF 121
Query: 333 ILLPVAAALIPVILTISLSILILLQ 357
P+ A L+P + +L +
Sbjct: 122 GFPPLLAVLMPAAACALAGVYLLRR 146
>gi|325282729|ref|YP_004255270.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
gi|324314538|gb|ADY25653.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
Length = 347
Score = 82.6 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 44/364 (12%), Positives = 93/364 (25%), Gaps = 39/364 (10%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY LK + L +++ + D+ + N + + +P ++
Sbjct: 4 LTRYILLDVLKWYVMGFL-LFVVLQMTDVLSLTAGAFLDYNATPQQALSTLLYNLPTLLN 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ + ++ F + SE+ A G+ L+ P + +L+G T +A
Sbjct: 63 RSLVLAVPFAVLLSFGRMQGDSEIKAMYAAGVRPLSLVWPLALPFLLVGALTFWNSGWVA 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
D + + + A P+ +
Sbjct: 123 PWANARWYDAWYDIYGMTPEPPTREMYAYSEGETLFYAGRVASGEEPQQALLSGVMVQRG 182
Query: 185 DKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
AD L + G P + QK +
Sbjct: 183 G------EVITADSGTWNTATQTWTLTGAWVTRPGETPQPSAEP-------LTFVQKDTL 229
Query: 243 QFASRSFYEIIKKMSFSNKS----NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
++ + + + E Q V F
Sbjct: 230 APPRPEADQLSRAELRAELADPTLQGAERRTLEHQLAGRTADSFTAVI-----------F 278
Query: 299 SRSNQPRIIVAYGIFSGFMLYTII--------TIMKSFGKSGILLPVAAALIPVILTISL 350
+ + ++ G F ++ T+ G L P A +P ++ I L
Sbjct: 279 ALAAGLLGLLMPGRAWAFAAVLLVVVVYYVPWTLGPQLAAGGALTPALVAWLPNLIFIVL 338
Query: 351 SILI 354
+ +
Sbjct: 339 AAAL 342
>gi|260596296|ref|YP_003208867.1| lipopolysaccharide ABC transporter permease LptF [Cronobacter
turicensis z3032]
gi|260215473|emb|CBA27590.1| Lipopolysaccharide export system permease protein lptF [Cronobacter
turicensis z3032]
Length = 370
Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats.
Identities = 51/351 (14%), Positives = 124/351 (35%), Gaps = 31/351 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPTNLVLALLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++L GI + +
Sbjct: 61 QLILPLSLFLALLMTLGRLYTESEITVMHACGLSKAVLVKAAMVLALLTGIIAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS-- 181
+ +++ + K N + + + + + + ++D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQF--QQATDGNAVLFIESV--DGSKFKDVFLAQ 176
Query: 182 ----------ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+ + ++ RKD + N + + + RI K+ +
Sbjct: 177 LRPKGNARPSVVVADSGELSQRKDGSQVVTLNQGTRFEGTAMLRDFRITDFKDYQAIIGH 236
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ +EQ ++ ++ + A +F++ + + ++ M L+
Sbjct: 237 QAVALDPDDAEQMDMQTLWQ-------------ADSKSARAEFHWRLTLVFAVIVMALMV 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+S+ R + + + + + + + T ++S G G L P+
Sbjct: 284 VPLSVVNPRQGRV-LSMLPAMLLYLIFFLLQTSLRSNGAKGKLDPLIWMWA 333
>gi|291514071|emb|CBK63281.1| Predicted permeases [Alistipes shahii WAL 8301]
Length = 500
Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/197 (18%), Positives = 77/197 (39%), Gaps = 6/197 (3%)
Query: 9 FFKYYLKTTLY-FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR--VPLIIQQ 65
+ LK+ L +L I++FV+ +N + + EL +S G ++ + +I
Sbjct: 4 IHRLVLKSYLGPMVLTFFIVMFVLMMNIVWRYIDELVGKGLSAGIIIELMTYFMANMIPM 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+P L+ I+ NL EL+ ++ G+S+ Q+ P ++ L+ + + + N +
Sbjct: 64 GLPLSMLLAAIMTMGNLGENYELLAMKSAGMSLVQITKPLIILVSLVSVGSFFIGNNLVP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ K + + + + N ++ I P+ H+ D
Sbjct: 124 NANKKLFSTLYDIRQQKQALEFQDGLFF---NGIDNMSIRVSHQEPDTHLLHDVLIYDNR 180
Query: 186 KKNKIIHRKDADLAIIY 202
N ++ AD I
Sbjct: 181 AANGNMNTIVADSGYIR 197
Score = 39.8 bits (92), Expect = 0.69, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 1/98 (1%)
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
+ K + YR++ +++ + +P+ ++ LI A + R + V +
Sbjct: 354 ESTAKEALNQLYRSKVEWHKKMSLPVSILIFFLIGAPLGA-IIRKGGLGLPVVVSVIFFV 412
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I + K G V + + ++I +
Sbjct: 413 IYYMISLSGEKLAKEGNWEAVYGMWLSTFILTPIAIYL 450
>gi|229845239|ref|ZP_04465372.1| hypothetical protein CGSHi6P18H1_02459 [Haemophilus influenzae
6P18H1]
gi|229811834|gb|EEP47530.1| hypothetical protein CGSHi6P18H1_02459 [Haemophilus influenzae
6P18H1]
Length = 367
Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/314 (15%), Positives = 110/314 (35%), Gaps = 24/314 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + LL +++ F + N L +P +
Sbjct: 2 ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAAN-GNVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++++ K N ++ +N +FI +++ +
Sbjct: 121 SPWAIQKQVNIVKDAKANPTVGVLSSGQFISTNNNNVVLFI----DKIKDNQIRNVYLFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKM 234
+ + + A+ + + + LK + + D T +
Sbjct: 177 MTPQKQTKPSVVTAEKGELIALPNGDQVLNLKNTKRVEGTSVLPDFRITHFDEYRAYLGY 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ +++ A + ++I S S K+ + ++ I + L + M LIA +
Sbjct: 237 QAAENTNDEAAELTLSQLIDLDSSSVKA----------ELHWRITLILAVPLMALIAVPL 286
Query: 295 SLEFSRSNQPRIIV 308
S R + I+
Sbjct: 287 SRVNPRQGRFAKIL 300
>gi|161505034|ref|YP_001572145.1| hypothetical protein SARI_03165 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160866381|gb|ABX23004.1| hypothetical protein SARI_03165 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 366
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 65/363 (17%), Positives = 129/363 (35%), Gaps = 31/363 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + K N + Q +N +FI + + D
Sbjct: 121 GPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFI----ESVDGSDFHDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
I K AD + + V L K ++ + D T + G
Sbjct: 177 IRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGH 236
Query: 238 QKF------SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
Q ++Q R+ + + RA + ++ I + + M L+
Sbjct: 237 QAVALDPNDTDQMDMRTLWN-------------TDSDRARAELHWRITLVFTVFMMALMV 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+S+ R + + + + + + I T +KS G G L PV ++ ++L+
Sbjct: 284 VPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWTVNLIYLALA 342
Query: 352 ILI 354
I +
Sbjct: 343 IGL 345
>gi|311694207|gb|ADP97080.1| permease YjgP/YjgQ family protein [marine bacterium HP15]
Length = 369
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/362 (11%), Positives = 118/362 (32%), Gaps = 28/362 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + + + + +++ + + + + S + A R P +
Sbjct: 3 IIFRYLIRQIMISMVAVSGILLLVFMSGRFLKYLDSAAQ-GSISAGVLLEIMAFRFPGFL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++ + + SE+ + A G+S LL ++GS+ + I + +
Sbjct: 62 ELILPLGLFIGILLAYGRMYLESEMTVLSACGVSDKALLGKTLLGSLPVMIIVGAMSLYV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ G +++ + + + + + P + + + +
Sbjct: 122 SPWGMNQVQEILNEQRKATEFEM--LAPGRFQDFSSGGRVTYTEALSEDKRQLQGVFIAE 179
Query: 184 IDKKNKIIHRKDADLA------IIYNDKVKLKKVVEYQYGRIP-----IDKNSTTLNIPI 232
+ + AD + + L+ ++ ID + L I
Sbjct: 180 YAPDGRGLTIITADSGSQLIDPETGSRFLILENGGRFEGAAGQLNYNVIDFEAYGLKIEG 239
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
G ++ E ++ S + ++ +PL++ +TL+A
Sbjct: 240 GEAGTKQREEGASTWSLMQ-------------SDRLEDRALLHWRFSLPLIVPIVTLLAV 286
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+S + + + ++ + + + +G + L L + +
Sbjct: 287 RLS-RVNPRQGRFFHLLPAMLVYITYLGLLIVARDWLAAGKVPEWLGMLWVHALFLGFGL 345
Query: 353 LI 354
+
Sbjct: 346 WL 347
>gi|229513427|ref|ZP_04402891.1| hypothetical protein VCB_001072 [Vibrio cholerae TMA 21]
gi|229349304|gb|EEO14260.1| hypothetical protein VCB_001072 [Vibrio cholerae TMA 21]
Length = 366
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 109/344 (31%), Gaps = 19/344 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L+ Q+ + +P + I EN +
Sbjct: 121 APWSQDKEAHLMDQFAAENSVDLLQKGHF--QRSPDGSSVVFIDNI--ENRKLYNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ I+ D+ + + + + L Y+ +D T + + G
Sbjct: 177 LAPRDSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + ++ +++ RA+ + + I + + + +T++ +S
Sbjct: 237 REVKSAERDWEALPTLSLLNNADR-------RAQAELQWRISLVVCIPLLTMLVVPLSAV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
R + + I + ++ KS + G L +
Sbjct: 290 NPRQGRFAKM-GPAILIYLTYFLALSATKSAIEDGSLPVIIGLW 332
>gi|162148704|ref|YP_001603165.1| permease [Gluconacetobacter diazotrophicus PAl 5]
gi|161787281|emb|CAP56875.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
Length = 402
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 52/370 (14%), Positives = 114/370 (30%), Gaps = 23/370 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
PG L RY L L L M + + L + N + +LA VP
Sbjct: 16 PGTLDRYLIGQMLPPFLLSLGVVMTALLLERLLTLLNVLASDGGTLKIFAGLLADL-VPH 74
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P V V +++ +E+ A G+S+ ++ PFVV +LG+ +
Sbjct: 75 YLGLALPAAICVSVFSVVRRMSQNNEIDALMASGVSLLRIARPFVVMGAVLGLVGFSLYG 134
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + G + + + P + + A ++
Sbjct: 135 FIQPYARYDFRQALYIASHAGW---TPHLQARMFAAPSDTLMLTADQVQGAGTRLRRV-- 189
Query: 182 ITIDKKNKIIHRKDADLAII---YND---------KVKLKKVVEYQYGRIPIDKNSTTLN 229
DK + AD + + V + + + D +
Sbjct: 190 FIRDKSAGLERDITADSGRLLMTDDGTTVRLDLAHGVIVTDRNDDRPTLTTFDTTTRFFQ 249
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
K F+ + E+ + + + + +F + + + + +
Sbjct: 250 TSSKAHAFRNRGNDERELTVLELRHGIRHRDLA--IRRTHLVAELHFRLARAMAIPFIPI 307
Query: 290 IA-ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+A A + + + + +A GF + + S S + P P +
Sbjct: 308 LACALAGMAKRQRHNTGLAIAAISLVGFDH--ALQLGLSLVASRSMSPWLVIWGPFAVFG 365
Query: 349 SLSILILLQK 358
+ ++L++
Sbjct: 366 FACVWLILRR 375
>gi|315179053|gb|ADT85967.1| hypothetical permease [Vibrio furnissii NCTC 11218]
Length = 367
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/344 (11%), Positives = 109/344 (31%), Gaps = 19/344 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L ++ + + + +P +
Sbjct: 2 IIVRYLIRETLKSQLAIFFVLFLVFLSQKFIRVLADASD-GEIPARLILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + I+ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLGIITSCLAGFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++Q + +P + I EN +
Sbjct: 121 SPWSQDKVQSVMEQLAAENSVDLLQKGQF--QRSPDGSSVVFIDNI--ENKKLSNVFVAQ 176
Query: 184 IDKKNKIIHRK---DA-DLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ + I+ DA D+ + + + + + Y+ +D T + + G
Sbjct: 177 LTPRESILPSVMFSDAGDVKELSDGRQVITMYNGTRYEGVPTRVDYMVTKFDEYEGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ E+ ++ + +++S + + + I + + + +T++ +S
Sbjct: 237 RAVKEKGRDWEAIPTLELVKNADRSA-------QAELQWRISLVVCIPLLTMLVVPLSAV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
R + + I + I+ KS + G + +
Sbjct: 290 NPRQGRFAKM-GPAILIYLTYFLAISATKSALEDGSIPAIVGMW 332
>gi|145219916|ref|YP_001130625.1| permease YjgP/YjgQ family protein [Prosthecochloris vibrioformis
DSM 265]
gi|145206080|gb|ABP37123.1| permease YjgP/YjgQ family protein [Chlorobium phaeovibrioides DSM
265]
Length = 441
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 53/136 (38%), Gaps = 1/136 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY K ++ + L + ++ + ++ L A + +
Sbjct: 2 KLIDRYILKAHVGPFFFAFLTIIFVLILQFFASFADRFIGR-GIGFGALVELIALQSAWM 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ ++ F L TSE+ + RA G+S+++L+ P ++ ++L F N
Sbjct: 61 VGLAAPMAVLIAVVMAFGALTTTSEMTVFRASGVSLYRLMIPILLAGLVLSFFVERFNNV 120
Query: 123 IATSGEKIGIDLIQQW 138
+ L+
Sbjct: 121 VQPLANYQARSLMDDI 136
Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 11/86 (12%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
R +++ + L+ A + + +R I +F + + ++ +
Sbjct: 344 RFMAEYHKKYALAFACFFFVLVGAPLGI-LARRGGFGIGAILSLFFFVLYWILMIAGEKM 402
Query: 329 GKSGILLPVAAALIPVILTISLSILI 354
G+L P AA + + ++ + +
Sbjct: 403 AVRGVLEPWAAIWMADAVMAAIGLTL 428
>gi|311281181|ref|YP_003943412.1| permease YjgP/YjgQ family protein [Enterobacter cloacae SCF1]
gi|308750376|gb|ADO50128.1| permease YjgP/YjgQ family protein [Enterobacter cloacae SCF1]
Length = 366
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 57/357 (15%), Positives = 126/357 (35%), Gaps = 19/357 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ GI L +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILALFTGIVAALNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + + + + + + + D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQF--QQASDGNSVLFIESV--DGKKFRDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDK-----VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
I K AD I K V L + ++ + D T + G
Sbjct: 177 IRTKGNARPSVVVADSGNITQQKDGSQVVHLNEGTRFEGTAMLRDFRVTDFKNYQAIIGH 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q S + ++M+ N A + ++ + + + M L+ +S+
Sbjct: 237 QTVSLDPSDT------EQMNMLTLWNT-DTNGARAELHWRLTLVATVFIMALMVVPLSVV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + T ++S G+ G L P+ + +L +L++ +
Sbjct: 290 NPRQGRV-LSMLPAMLLYLVFFLLQTSIRSNGEKGKLDPMVWMWVVNLLYFALAVAL 345
>gi|237799873|ref|ZP_04588334.1| hypothetical protein POR16_13645 [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022728|gb|EGI02785.1| hypothetical protein POR16_13645 [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 375
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 54/371 (14%), Positives = 115/371 (30%), Gaps = 32/371 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAISAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFMIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + + SE+ + A G+S +LL + + L+G+ + +
Sbjct: 61 QVILPLGLFLGILMAYGRMYLESEMTVLAATGMSQQRLLAMTMGPAALVGLVVAWLSFSL 120
Query: 124 ATSGEKIGIDLIQQW--KDNGDKQKSDIIPWMQISNP-------------QQDIFIGAKK 168
A G LI Q D ++ +FI K+
Sbjct: 121 APQGATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLGGVFISEKR 180
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ + T + +K ++ + + I+ N Y + D L
Sbjct: 181 MSSDKSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVVKYDTYGAAL 240
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
P + S F R + + I +PL + +T
Sbjct: 241 PKPEISEEITDREAIPTSELF--------------GSSTPRNVAELQWRISLPLSVFIVT 286
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+A +S + + + I I+ ++S + G L + +
Sbjct: 287 LMAIPLS-RVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHAIYL 345
Query: 349 SLSILILLQKE 359
+ + +L E
Sbjct: 346 CIGL-VLFYWE 355
>gi|209545529|ref|YP_002277758.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209533206|gb|ACI53143.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 402
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 52/370 (14%), Positives = 114/370 (30%), Gaps = 23/370 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
PG L RY L L L M + + L + N + +LA VP
Sbjct: 16 PGTLDRYLIGQMLPPFLLSLGVVMTALLLERLLTLLNVLASDGGTLKIFAGLLADL-VPH 74
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P V V +++ +E+ A G+S+ ++ PFVV +LG+ +
Sbjct: 75 YLGLALPAAICVSVFSVVRRMSQNNEIDALMASGVSLLRIARPFVVMGAVLGLVGFSLYG 134
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I + G + + + P + + A ++
Sbjct: 135 FIQPYARYDFRQALYIASHAGW---TPHLQARMFAAPSDTLMLTADQVQGAGTRLRRV-- 189
Query: 182 ITIDKKNKIIHRKDADLAII---YND---------KVKLKKVVEYQYGRIPIDKNSTTLN 229
DK + AD + + V + + + D +
Sbjct: 190 FIRDKSAGLERDITADSGRLLMTDDGTTVRLDLAHGVIVTDRNDGRPTLTTFDTTTRFFQ 249
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
K F+ + E+ + + + + +F + + + + +
Sbjct: 250 TSSKAHAFRNRGNDERELTVLELRHGIRHRDLA--IRRTHLVAELHFRLARAMAIPFIPI 307
Query: 290 IA-ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+A A + + + + +A GF + + S S + P P +
Sbjct: 308 LACALAGMAKRQRHNTGLAIAAISLVGFDH--ALQLGLSLVASRSMSPWLVIWGPFAVFG 365
Query: 349 SLSILILLQK 358
+ ++L++
Sbjct: 366 FACVWLILRR 375
>gi|91228859|ref|ZP_01262764.1| putative permease [Vibrio alginolyticus 12G01]
gi|269966356|ref|ZP_06180442.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
gi|91187597|gb|EAS73924.1| putative permease [Vibrio alginolyticus 12G01]
gi|269829033|gb|EEZ83281.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
Length = 366
Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/367 (10%), Positives = 108/367 (29%), Gaps = 29/367 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + + +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFVSQKFISVLADASD-GDIPAGLIFSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALYLALITSAVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L +Q + P + +++ +
Sbjct: 121 SPWSQDRVEQLYEQVASENSVDLLKKGQF--QGTPDGSSVVFID--DIKDNTLSNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP-----IKM 234
+ ++ ++ ++ + + + + +Y +P I
Sbjct: 177 MRPRDSVLPSVMFSSSGEVKELSDGRQIITMKEGTRYEGVPTRVEYMITKFDEYEGVIGQ 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV-AMTLIAAS 293
+K + + ++I ++ + + I + + + +T++
Sbjct: 237 REVKKKGRDWEAYPTVDLIGHPDPEAQA----------ELQWRISL-FVCIPLLTMLVIP 285
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S R + + I + I+ KS + G + I + L +
Sbjct: 286 LSAVNPRQGRFAKM-GPAILIYLAYFLAISATKSALEDGDIPAAIGMW--PINAMLLIVA 342
Query: 354 ILLQKED 360
I+ D
Sbjct: 343 IMANMMD 349
>gi|113460662|ref|YP_718728.1| permease [Haemophilus somnus 129PT]
gi|112822705|gb|ABI24794.1| conserved permease [Haemophilus somnus 129PT]
Length = 367
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 61/362 (16%), Positives = 128/362 (35%), Gaps = 27/362 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K ++ + L ++L F L + + L + +P +
Sbjct: 2 ILIRYLTKEVFRSQIAILSILLLLFFSQQLVRVLGSAS-VGKIPADLVFALLSLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I P + ++ F L SE+ + RA G+ L+ ++ S+L + +
Sbjct: 61 QLIFPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVGVALILSLLTAGLATYNVFYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + I LI K N ++ + N +FI +N+ +D
Sbjct: 121 SPWAMQKQIQLIDDAKANPTMGALASGQFVNVGNTDVVLFIN----EIKNNQIQDIYVFQ 176
Query: 184 I-DKKNKIIHRKDADLAII-----YNDKVKLKK---VVEYQYGRIPIDKNSTTLNIPIKM 234
+ +KKN+ A+ + + + L+ V + +
Sbjct: 177 MENKKNQKPSVTVAETGQLKVLPNGDQVLSLENSQRVEGSALLPDFRITHFDQYQAYLDY 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
K + + S E+I S + K+ + ++ + + + M LIA +
Sbjct: 237 KTTDKDTSETEILSLKELINSKSPAAKA----------ELHWRLTLIFAVPIMALIAVPL 286
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S R + + + + + + + +KS G SG + +P++ L + +
Sbjct: 287 SRVNPRQGRFAK-ILPALLLYLIYFLLQSSLKSAGASGKIEAHI--FMPLVSIFFLFLAV 343
Query: 355 LL 356
LL
Sbjct: 344 LL 345
>gi|88800548|ref|ZP_01116110.1| predicted Permease [Reinekea sp. MED297]
gi|88776693|gb|EAR07906.1| predicted Permease [Reinekea sp. MED297]
Length = 350
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 57/329 (17%), Positives = 121/329 (36%), Gaps = 25/329 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L+RY + +K ++ L +IL+ ++++ ++ +S + V+ +VP+++
Sbjct: 2 TLYRYLYGQIMKPFVFMTLVLLILLIATEISDTLTKILT-GQFSDNALWVVIGFQVPILL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+I+P + + L++ SE I AIGIS LL +V + L + VL +N
Sbjct: 61 QEILPAAFFLACLTTLHRLSQDSERAILHAIGISDGDLLRFLLVFAALPAMLLVLALNHY 120
Query: 124 ATSGEKIGIDL-IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
T + ++L + + + D + I A + + ED
Sbjct: 121 ITPKAQENLELYVTEQLNRPITDIIDANSFYNIGAINATF--YAARNNSQTQSLEDV--F 176
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF---QK 239
TI K A + +Q+ + S + P++ F Q
Sbjct: 177 TIAKSQSSYTVTAAKEVRTQGA----ENAQYFQFFEGEQTQFSFDESEPLQTQRFGMMQL 232
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET---QFYFLIVIPLMLVAMTLIAASVSL 296
E+ + S ++ ++ + + T +F + +PL + ++
Sbjct: 233 RIEEDGNASPWQRRNALTSFELAKSEDRHDQLTLISRFATSLYLPLFCIWAVVL------ 286
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIM 325
+R V + G +LY +
Sbjct: 287 --TRFKPRSAKVG-AMALGIVLYILTNFA 312
>gi|254229296|ref|ZP_04922714.1| putative permease, YjgP/YjgQ family [Vibrio sp. Ex25]
gi|262393202|ref|YP_003285056.1| hypothetical protein VEA_002429 [Vibrio sp. Ex25]
gi|151938220|gb|EDN57060.1| putative permease, YjgP/YjgQ family [Vibrio sp. Ex25]
gi|262336796|gb|ACY50591.1| putative membrane protein [Vibrio sp. Ex25]
Length = 366
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/367 (10%), Positives = 108/367 (29%), Gaps = 29/367 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + + +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFVSQKFISVLADASD-GDIPAGLIFSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALYLALITSAVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L +Q + P + +++ +
Sbjct: 121 SPWSQDRVEQLYEQVAAENSVDLLKKGQF--QGTPDGSSVVFID--DIKDNTLSNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP-----IKM 234
+ ++ ++ ++ + + + + +Y +P I
Sbjct: 177 MRPRDSVLPSVMFSSSGEVKELSDGRQVITMKEGTRYEGVPTRVEYMITKFDEYEGVIGQ 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV-AMTLIAAS 293
+K + + ++I ++ + + I + + + +T++
Sbjct: 237 REVKKKGRDWEAYPTVDLIGHPDPEAQA----------ELQWRISL-FVCIPLLTMLVIP 285
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S R + + I + I+ KS + G + I + L +
Sbjct: 286 LSAVNPRQGRFAKM-GPAILIYLAYFLAISATKSALEDGDIPAAIGMW--PINAMLLIVA 342
Query: 354 ILLQKED 360
I+ D
Sbjct: 343 IMANMMD 349
>gi|153834578|ref|ZP_01987245.1| inner membrane protein YjgP [Vibrio harveyi HY01]
gi|148869021|gb|EDL68066.1| inner membrane protein YjgP [Vibrio harveyi HY01]
Length = 366
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/360 (10%), Positives = 105/360 (29%), Gaps = 15/360 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + + +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFLSQKFISVLADASD-GDIPAGLIFSVVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +I+ +
Sbjct: 61 LLMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALYLAIITSGVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L +Q + P + ++ +
Sbjct: 121 SPWSQDRVEQLYEQVAAENSVDLLKKGQF--QGTPDGSSVVFID--DIKDSTLSNVFVAQ 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ ++ I+ + +L + + + F ++
Sbjct: 177 MRPRDSILPSVMFSS---SGEVKELSDGRQIITMHEGTRYEGVPTRVEYMITKFDQYEGL 233
Query: 244 FASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLV-AMTLIAASVSLEFSR 300
R + + +++ + A+ + + I + + + +T++ +S R
Sbjct: 234 IGQREVKQKGRDWEAYPTADLIGHPDPEAQAELQWRISL-FVCIPLLTMLVIPLSAVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ + I + I+ KS + G + I + L + IL D
Sbjct: 293 QGRFAKM-GPAILIYLAYFLAISATKSALEDGAIPAAIGMW--PINAMLLIVAILANMMD 349
>gi|170718034|ref|YP_001785074.1| permease YjgP/YjgQ family protein [Haemophilus somnus 2336]
gi|168826163|gb|ACA31534.1| permease YjgP/YjgQ family protein [Haemophilus somnus 2336]
Length = 367
Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 61/362 (16%), Positives = 128/362 (35%), Gaps = 27/362 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K ++ + L ++L F L + + L + +P +
Sbjct: 2 ILIRYLTKEVFRSQIAILSILLLLFFSQQLVRVLGSAS-VGKIPADLVFALLSLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I P + ++ F L SE+ + RA G+ L+ ++ S+L + +
Sbjct: 61 QLIFPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVGVALILSLLTAGLATYNVFYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + I LI K N ++ + N +FI +N+ +D
Sbjct: 121 SPWAMQKQIQLIDDAKANPTMGALASGQFVNVGNTDVVLFIN----EIKNNQIQDIYVFQ 176
Query: 184 I-DKKNKIIHRKDADLAII-----YNDKVKLKK---VVEYQYGRIPIDKNSTTLNIPIKM 234
+ +KKN+ A+ + + + L+ V + +
Sbjct: 177 MENKKNQKPSVTVAETGQLKALPNGDQVLSLENSQRVEGSALLPDFRITHFDQYQAYLDY 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
K + + S E+I S + K+ + ++ + + + M LIA +
Sbjct: 237 KTTDKDTSETEILSLKELINSKSPAAKA----------ELHWRLTLIFAVPIMALIAVPL 286
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S R + + + + + + + +KS G SG + +P++ L + +
Sbjct: 287 SRVNPRQGRFAK-ILPALLLYLIYFLLQSSLKSAGASGKIEAHI--FMPLVSIFFLFLAV 343
Query: 355 LL 356
LL
Sbjct: 344 LL 345
>gi|153801086|ref|ZP_01955672.1| membrane protein, putative [Vibrio cholerae MZO-3]
gi|124123319|gb|EAY42062.1| membrane protein, putative [Vibrio cholerae MZO-3]
Length = 354
Score = 81.8 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 111/344 (32%), Gaps = 19/344 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI EN +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFI----DNIENRKLYNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ I+ D+ + + + + L Y+ +D T + + G
Sbjct: 177 LAPRDSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + ++ +++ RA+ + + I + + + +T++ +S
Sbjct: 237 REVKSAERDWEALPTLSLLNNADR-------RAQAELQWRISLVVCIPLLTMLVVPLSAV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
R + + I + ++ KS + G L +
Sbjct: 290 NPRQGRFAKM-GPAILIYLTYFLALSATKSAIEDGSLPVIIGLW 332
>gi|156975868|ref|YP_001446775.1| hypothetical protein VIBHAR_03634 [Vibrio harveyi ATCC BAA-1116]
gi|156527462|gb|ABU72548.1| hypothetical protein VIBHAR_03634 [Vibrio harveyi ATCC BAA-1116]
Length = 366
Score = 81.8 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/367 (10%), Positives = 107/367 (29%), Gaps = 29/367 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + + + +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFLSQKFISVLAKASD-GDIPAGLIFSVVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +I+ +
Sbjct: 61 LLMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALCLAIITSGVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L Q + + P + ++ +
Sbjct: 121 SPWSQDRVEQLYDQVEAENSVDLLQKGQF--QGTPDGSSVVFID--DIKDSTLSNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP-----IKM 234
+ ++ I+ ++ + + + + +Y +P I
Sbjct: 177 MRPRDSILPSVMFSSSGEVKELADGRQIITMHEGTRYEGVPTRVEYMVTKFDQYEGVIGQ 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV-AMTLIAAS 293
++ + + ++I ++ + + I + + + +T++
Sbjct: 237 REVKQKGRDWEAYPTLDLIGHPDPEAQA----------ELQWRISL-FVCIPLLTMLVIP 285
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S R + + I + I+ KS + G I + L +
Sbjct: 286 LSAVNPRQGRFAKM-GPAILIYLAYFLAISATKSALEEGTFPAAIGMW--PINAMLLIVA 342
Query: 354 ILLQKED 360
IL D
Sbjct: 343 ILANMMD 349
>gi|58040480|ref|YP_192444.1| hypothetical protein GOX2052 [Gluconobacter oxydans 621H]
gi|58002894|gb|AAW61788.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
Length = 393
Score = 81.8 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 55/372 (14%), Positives = 120/372 (32%), Gaps = 30/372 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY LL +I + + L + + + + + A+L +P
Sbjct: 16 ILDRYLLTQMAPPFAIALLAMLIALLLERLLSLFDYLASAGSSLGTCIALLTDL-LPHYF 74
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+P + + ++ +E+ +A +S+ ++ PF++ +LLG +V + I
Sbjct: 75 GIALPAALCIAVFLTIRGMSDNNEIDALQAGRVSLMRISRPFMIVGLLLGAASVFLYGYI 134
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ G + ++ + A +
Sbjct: 135 QPVARYDYRAGFYFAEHTGWAPHLQAGMF---ASTSSKAVMTADSVSHAGTRLRRVFIRE 191
Query: 184 IDKKNKIIHRKDADLAIIY-------------NDKVK---LKKVVEYQYGRIPIDKNSTT 227
++ + H A + N ++ + ++ +
Sbjct: 192 VNANG-VAHIITARTGALTISEKTRSTRLDLWNGEIVDDPFQATKPHKPTVTHFEHVVRV 250
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYF--LIVIPLM-L 284
++ P K F+ + +E+ + + + RAE F I IP +
Sbjct: 251 IDRPNKETSFRSRGADERELTLFELAHDLRYGLPGIEYRTLRAEMDFRMARAIAIPFIPP 310
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+A +A ++S R + +I I GF T++ S +G L A +P
Sbjct: 311 LA---VALAISAR-RRKSVWGLIAVAVILIGFD-QTLM-FGHSLASTGRLPIWLAIWVPE 364
Query: 345 ILTISLSILILL 356
+L + LL
Sbjct: 365 LLFCVGCLAALL 376
>gi|56416250|ref|YP_153325.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197365173|ref|YP_002144810.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|56130507|gb|AAV80013.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197096650|emb|CAR62265.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 366
Score = 81.8 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 65/363 (17%), Positives = 128/363 (35%), Gaps = 31/363 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++ + K + Q +N +FI + + D
Sbjct: 121 GPWSSKHQDEVLAEAKATPGMAALAQGQFQQATNGSSVLFI----ESVDGSDFHDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
I K AD + + V L K ++ + D T + G
Sbjct: 177 IRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGH 236
Query: 238 QKF------SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
Q ++Q R+ + N RA + ++ I + + M L+
Sbjct: 237 QAVALDPNDTDQMDMRTLWN-------------TDNDRARAELHWRITLVFTVFMMALMV 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+S+ R + + + + + + I T +KS G G L PV ++ ++L+
Sbjct: 284 VPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLALA 342
Query: 352 ILI 354
I +
Sbjct: 343 IGL 345
>gi|104783411|ref|YP_609909.1| hypothetical protein PSEEN4442 [Pseudomonas entomophila L48]
gi|95112398|emb|CAK17125.1| conserved hypothetical protein; putative membrane protein
[Pseudomonas entomophila L48]
Length = 371
Score = 81.8 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/362 (12%), Positives = 118/362 (32%), Gaps = 21/362 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ R+P +
Sbjct: 2 IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQ-GVLDPGVLFMIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+ + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLAMTLAPAALVALLVAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF--TS 181
A G +I Q + + ++P + +++ + +
Sbjct: 121 APLGVAQVQKIIAQQ--DALTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRINLAGVFISE 178
Query: 182 ITIDKK---NKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
++ ++ A+ N + L+ Y D + +
Sbjct: 179 KRFNQDKTKDRAPSVLVAEKGHQEVQADGNRYLVLQNGYRYDGNPGQADYRAIKYDTYGV 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + +E+ R R + + + +PL++ +TL+A
Sbjct: 239 LLPKPEVAEEVTEREAIPTSDL-------FGNPGVRERAELQWRLSLPLLVFVVTLLAVP 291
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S + + + I T++ ++ + G L L + + +
Sbjct: 292 LS-RVNPRQGRFLKLLPAILLYMAYLTMLISVRGALEKGKLPISLGIWWVHGLFLLIGLA 350
Query: 354 IL 355
++
Sbjct: 351 LM 352
>gi|28899417|ref|NP_799022.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
gi|153839665|ref|ZP_01992332.1| inner membrane protein YjgP [Vibrio parahaemolyticus AQ3810]
gi|260879348|ref|ZP_05891703.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
gi|260895693|ref|ZP_05904189.1| conserved inner membrane protein [Vibrio parahaemolyticus Peru-466]
gi|260900265|ref|ZP_05908660.1| conserved inner membrane protein [Vibrio parahaemolyticus AQ4037]
gi|28807653|dbj|BAC60906.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
gi|149746808|gb|EDM57796.1| inner membrane protein YjgP [Vibrio parahaemolyticus AQ3810]
gi|308087429|gb|EFO37124.1| conserved inner membrane protein [Vibrio parahaemolyticus Peru-466]
gi|308093070|gb|EFO42765.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
gi|308107549|gb|EFO45089.1| conserved inner membrane protein [Vibrio parahaemolyticus AQ4037]
gi|328471446|gb|EGF42341.1| putative permease [Vibrio parahaemolyticus 10329]
Length = 366
Score = 81.8 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/362 (10%), Positives = 110/362 (30%), Gaps = 19/362 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + + +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFVSQKFISVLADASD-GDIPAGLIFSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALYLALITSGVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + L +Q + P + ++ +
Sbjct: 121 SPWSQDRVEHLYEQVAAENSVDLLKKGQF--QGTPDGSSVVFID--DIKDSTLSNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ ++ ++ ++ + + ++V+ Q G + + K D ++
Sbjct: 177 MRPRDSVLPSVMFSSSGEVKELSDG----RQVITMQEGTRYEGVPTRVEYMITKFDEYEG 232
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV-AMTLIAASVSLEF 298
Q + + ++ A+ + + I + + + +T++ +S
Sbjct: 233 VIGQREVKQKGRDWEAYPTADLIGHPDPE-AQAELQWRISL-FVCIPLLTMLVIPLSAVN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + + I + I+ KS + G + I + L + I+
Sbjct: 291 PRQGRFAKM-GPAILIYLAYFLAISATKSALEDGAIPAAIGMW--PINAMLLIVAIMANM 347
Query: 359 ED 360
D
Sbjct: 348 MD 349
>gi|319404056|emb|CBI77644.1| putative permease, YjgP/YjgQ family [Bartonella rochalimae ATCC
BAA-1498]
Length = 382
Score = 81.8 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 55/369 (14%), Positives = 122/369 (33%), Gaps = 28/369 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I Y K LLGA+ + + + + N + + ++ +P +
Sbjct: 3 IFELYILKRIFILFSAVLLGAVGISWTVQILARVNFLTTNGQ-TFLTILYFSSLLIPSVT 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+PF +V + +N+ SEL + A GIS + P ++ +IL + + N I
Sbjct: 62 SLIMPFALVVAITTILLTMNQDSELAVISASGISKNIVWKPILLLAILASFTSFSITNFI 121
Query: 124 ATSGEKIGIDLIQQWKD--------NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
A ++ G Q+ +++I + IG ++ +
Sbjct: 122 APHARLNMRQILASSHSDLISLFIREGSFQELTKNLYIEIGERNANGTIG--RLFIADQR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN--IPIK 233
K I++ K I+ + +++ I ++ +L+ IP K
Sbjct: 180 DPQLGLFYYATKGAIVNNKKGKFLILNDGEIERIDYKNDNVSIIKFSSHTFSLSEFIPNK 239
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
++ S F + K + + + L + LIA +
Sbjct: 240 KTPNIYPKDRPLSYLFNPNPSDPHYQRK-----PLQYRAELHRRFTECLYPIVFALIAIA 294
Query: 294 V-----SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+ S +R + + + + + + + +P+ + I
Sbjct: 295 IAGDAHSYRQARISATFSTITFSLLI---YWLGYFFARKTENNPSYIPLLYVI--PIGIS 349
Query: 349 SLSILILLQ 357
L+ +LL+
Sbjct: 350 LLTFFMLLK 358
>gi|312884631|ref|ZP_07744334.1| permease [Vibrio caribbenthicus ATCC BAA-2122]
gi|309367723|gb|EFP95272.1| permease [Vibrio caribbenthicus ATCC BAA-2122]
Length = 367
Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/349 (13%), Positives = 114/349 (32%), Gaps = 13/349 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ L + + + S A A +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFILFLVFLSQKLIRVLADATD-GDIPASLVANYVALSMPSMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +I+ G+
Sbjct: 61 LIMLPLSLFLGILLTFGRLYAESEITVMNATGIGNKFLIKAALYLAIITGLLAAANAFFF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + + L ++ + + + +P + + ++
Sbjct: 121 APYSQNQLVHLQEEAAAENNVELLQKGHF--QPSPDGSSVVFID--DIDKKKLQNVFVAQ 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ ++ I+ Y + +L + + + F ++
Sbjct: 177 LRPRDSILPSVSFSQ---YGEVKELSDGRQVIRMYDGTRYEGIPTRLDYMVTNFDQYEGL 233
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYR--AETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
R + + N+F ++R A+ + + I + L + +T++ +S R
Sbjct: 234 IGQREIKSKGRGLDAIPTLNLFGDHRPAAQAELQWRISLVLCIPLLTMLVVPLSAVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ + I + I+ MKS +SG + V I + L
Sbjct: 294 GRFAKM-GPAILIFLAYFLAISAMKSAIESGSVSAVIGMW--PINGLLL 339
>gi|146283386|ref|YP_001173539.1| permease [Pseudomonas stutzeri A1501]
gi|145571591|gb|ABP80697.1| predicted permease [Pseudomonas stutzeri A1501]
Length = 373
Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/363 (12%), Positives = 119/363 (32%), Gaps = 21/363 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ R+P +
Sbjct: 2 IVFRYLSRELLVTMSAVSAVLLVIIMSGRFIKYLAQAAQ-GVLDPGVLLLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+ + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQRRLLAYSMAPAALVAALVGWLSLGL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF---- 179
A G ++ Q + ++P + +++ +
Sbjct: 121 APQGIAEVDRILNQQDSLTEFDT--LVPGRFQTLRGGSRVTYTRELSADRSELGGVFISE 178
Query: 180 -TSITIDKKNKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
K + A+ + + L+ Y D + +
Sbjct: 179 TNVSRQTGKESGLSVLVAESGRQEIQPDGSRYLILENGYRYDGNPGQADYRAIQYDTYGV 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + S + + R + + N R T+ ++ + +PL++ +T++A
Sbjct: 239 LLPKPEVSMELSEREAMPTRELL-------GSDNLRHRTELHWRLSLPLLVFVVTVLAVP 291
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ R + + + I ++ ++ G L L +++ +L
Sbjct: 292 LAKVNPRQGR-FLKLLPAILLYMTYLALLIAVRGALDKGRLPMALGLWWVHGLFLAIGLL 350
Query: 354 ILL 356
+L
Sbjct: 351 MLF 353
>gi|307566095|ref|ZP_07628553.1| putative membrane protein [Prevotella amnii CRIS 21A-A]
gi|307345283|gb|EFN90662.1| putative membrane protein [Prevotella amnii CRIS 21A-A]
Length = 633
Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/203 (16%), Positives = 72/203 (35%), Gaps = 10/203 (4%)
Query: 2 PGILWRYFFKYYLKTTLY-FLLGAMILV--FVIDLNEIQNQMGELPNYSISRGAVLAATR 58
L + K + + F + +L+ F+ + G + +A
Sbjct: 4 FKKLDIFIAKQFGLLFVGTFFISLFVLMMQFLWRFVDDLIGKGLTIDVLAQFFGYMALMM 63
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
VP Q +P L+ +++ + NL +SEL +A GIS++Q + +IL+ + +
Sbjct: 64 VP----QALPLAVLLSSLMTYGNLGESSELTAIKAAGISLFQSFRGLIGITILITLLSFY 119
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N IA +K LI K + + + + + +K + +
Sbjct: 120 FQNNIAPVAQKHLYQLIISMKQKSPELEIPEGVFY---SGIPQTNLYVEKKNLKTGHLYN 176
Query: 179 FTSITIDKKNKIIHRKDADLAII 201
+ + AD ++
Sbjct: 177 IMVYRMTDSYEDQAIILADSGML 199
>gi|304392005|ref|ZP_07373947.1| permease YjgP/YjgQ family protein [Ahrensia sp. R2A130]
gi|303296234|gb|EFL90592.1| permease YjgP/YjgQ family protein [Ahrensia sp. R2A130]
Length = 402
Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 57/367 (15%), Positives = 121/367 (32%), Gaps = 27/367 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY FK L L G + +++V+ + + + I + VP +I
Sbjct: 5 LLERYVFKKALVMVATALAGLVGVIWVVRAVQEVDVIMSKGQ-GIMTYLTITTLGVPSLI 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P ++ + LN SE+V+ A G S W L PF+ + L+ I +
Sbjct: 64 AAVAPLALMIGMVRTISALNDESEMVVMHASGASRWSLARPFLWLAGLMAIMIYFLSLYG 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI- 182
+ + + + + +F A ++ +
Sbjct: 124 GPHSLTKMRETVNTMRADLISVVVKDGEF--QQLGGGLMFHIATRL--PGGELKGVFITD 179
Query: 183 TIDKKNKIIHRKDA---------DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI- 232
T D+ + + D+ ++ +V+ V I D + L+
Sbjct: 180 TRDENEHLTYLADSGTISKIGEDAYLVLRQGQVQRTTVKTNNSSFIDFDSYAFNLSTFSG 239
Query: 233 -KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
DG + + + + +++ +R +F+ L M I
Sbjct: 240 GTGDGKSRSRGELRTSELFS----PDPADEMFKRAPHRFRVEFHTRFTSGLYAF-MVAIV 294
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI-LLPVA--AALIPVILTI 348
V + +S++ + V I S +L ++ ++ + P+ A +L I
Sbjct: 295 ILVCMGNPQSHRQGLTVL--ITSTVVLVILLRGAGILVENNLKATPLLWVAVWGIPLLAI 352
Query: 349 SLSILIL 355
S +L
Sbjct: 353 GNSFRLL 359
>gi|126728787|ref|ZP_01744602.1| Predicted permease [Sagittula stellata E-37]
gi|126710717|gb|EBA09768.1| Predicted permease [Sagittula stellata E-37]
Length = 376
Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 54/331 (16%), Positives = 107/331 (32%), Gaps = 29/331 (8%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + +F L + + +V + +++ +S A +P +I
Sbjct: 5 DRYVLSQLMVLFGFFALVLVSVYWVNRAVVLFDRLIN-DGHSARIVLEFTALSLPAVIAL 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P T + V L+ SEL + +A G S W+L P +V I++ + ++ + +
Sbjct: 64 VLPMATFAAAVYVTNRLSGDSELTVVKATGFSPWRLARPVLVFGIMVTLMMSVLTHVLVP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQ----------KSDIIPWMQISNPQQ---DIFIGAKKILPE 172
K Q+ + + I +++ P+ D+ + ++
Sbjct: 124 QSLKQLRMREQELSSSVSARLLREGTFLHPSKGITFYIRDITPEGTLQDVLLSDRREPER 183
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
I+ + I A LA N + T I
Sbjct: 184 EVIYTADRAYLIRDDEGPKMVMLAGLAQTMN-----TTDMRLSTTNFSDFTYDLTGLITA 238
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+K + + + + A +F PL+ V LI
Sbjct: 239 SPQKRRKLDAIPTTELLLNTDGIAAETGQQIGEVLEEAHMRFQ----GPLLCVVAALIGY 294
Query: 293 SVSL--EFSRSNQPRIIVAYGIFSGFMLYTI 321
S + FSR R I +F+ F+L +
Sbjct: 295 SALMVGVFSRFGVTRQI----VFAIFLLVVV 321
>gi|330504705|ref|YP_004381574.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina NK-01]
gi|328918991|gb|AEB59822.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina NK-01]
Length = 374
Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/366 (12%), Positives = 125/366 (34%), Gaps = 29/366 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ R+P +
Sbjct: 2 IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQ-GVLDPGVLFLIMGYRIPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL----LNPFVVGSILLGIFTVLV 119
Q I+P + ++ + L SE+ + A G+S +L + P ++ ++L+G ++ +
Sbjct: 61 QLILPLGLFLGFLLAYGRLYLDSEMTVLSATGVSQQRLTAYSMAPALIVALLVGWLSLGL 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
S +I + + + ++P S ++++ P+
Sbjct: 121 APQGVASVARILSE------QDALTELDTLVPGRFQSLRDGSRVTYSQELSPDRSELRGV 174
Query: 180 --TSITIDKKNKIIHRKD---ADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLN 229
+ + A+ + + L+ Y D + +
Sbjct: 175 FMSEKRFSTDGRSERGITVLVAESGRQEIQDDGSRYLILENGYRYDGEPGEADYRAIQYD 234
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ + + + + R + + + R + + + + +PL++ +TL
Sbjct: 235 TYGVLLPKPEVAIEASEREATPTRELL-------GSSDPRMQAELQWRLSLPLLVFIVTL 287
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+A +S R + + + IF ++ + G L + ++
Sbjct: 288 LAVPLSKVNPRQGR-FLKLLPAIFLYMAYLGLLIAARGALDKGRLPAALGLWWVHGIFLA 346
Query: 350 LSILIL 355
+ +L+L
Sbjct: 347 IGLLLL 352
>gi|327484988|gb|AEA79395.1| Predicted permease [Vibrio cholerae LMA3894-4]
Length = 366
Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 111/344 (32%), Gaps = 19/344 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + +P + I EN +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHF--QRSPDGSSVVFIDNI--ENRKLYNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ I+ D+ + + + + L + Y+ +D T + + G
Sbjct: 177 LAPRDSILPSVMFSHSGDVKELSDGRQIITLYEGTRYEGVPTRVDYMITNFDSYDGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + ++ +++ RA+ + + I + + + +T++ +S
Sbjct: 237 REVKSAERDWEALPTLSLLNNADR-------RAQAELQWRISLVVCIPLLTMLVVPLSAV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
R + + I + ++ KS + G L +
Sbjct: 290 NPRQGRFAKM-GPAILIYLTYFLALSATKSAIEDGSLPVIIGLW 332
>gi|257462588|ref|ZP_05626998.1| hypothetical protein FuD12_01969 [Fusobacterium sp. D12]
Length = 270
Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/273 (12%), Positives = 88/273 (32%), Gaps = 15/273 (5%)
Query: 91 SRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDII 150
+IG+ I +L P + F + + I L + +
Sbjct: 1 MNSIGMDIRAILKPILYLGFASMFFILFLQESIIPRSYIKLQYLSSKIAYENPVFQLKER 60
Query: 151 PWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKK 210
+M N ++ + K+ + H + DKK+ A + + L+K
Sbjct: 61 TFM---NNLENYSLYIDKVGRDKHA-KGILIFENDKKSTFPVVLVGHEAYWRDSSIVLEK 116
Query: 211 VVEYQYGRIPIDK-----NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF 265
+ + K + + + ++ S ++++M K
Sbjct: 117 ANFISFDEKGVRKLTGSFEDKRVELQAYFSDLKIKVKETEMMSIATLLQEMKGKTKEE-- 174
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM 325
+ + + + +P V ++++ +S+ RS + + GI + F +++ I
Sbjct: 175 -KLIYKVEIHRKLALPFSSVMLSMLGVFLSIGHQRSGKKA-GILVGILTIFFYISLLNIG 232
Query: 326 KSFGKSGILLPVAAALIPVILTISLSILILLQK 358
G + + +P + + ++ L
Sbjct: 233 IVLANVGKIPILLGVWLPNL--LLAALTYRLYL 263
>gi|86138693|ref|ZP_01057266.1| membrane protein, putative [Roseobacter sp. MED193]
gi|85824753|gb|EAQ44955.1| membrane protein, putative [Roseobacter sp. MED193]
Length = 387
Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 55/369 (14%), Positives = 129/369 (34%), Gaps = 35/369 (9%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY YL +F L + + +V + +++ + A +P +I+
Sbjct: 5 DRYVLSQYLLFFSFFALILVAVFWVNRAVVLFDRLIG-DGQTAIVFLEFTALALPNLIRM 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P + V L SEL + RA G S WQ+ P + ++ + ++ + +
Sbjct: 64 VLPVAVFASAVWVTNRLQSESELTVLRATGTSPWQMARPALAFGVITALMMSVLTHFLLP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
S Q+ N + ++ +P + + ++I + + F S D
Sbjct: 124 SSISQLALREQEVSRNVTAKLLTEGHFL---HPVKGVTFYIRQIDSNGTLNDVFLSDRRD 180
Query: 186 KKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDKNST-----TLNIPIKMDG 236
+ + A + N + + + + ++T + +I +
Sbjct: 181 PNQTMTY--TGARAFLVRDGENTHLIMVNGMAQRLEHRTQQLSTTNFSDFSYDISSLANQ 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S +E+++ + + + +F+ L+ VA+ LI S +
Sbjct: 239 STAAIRNIREISSWELLQDRENISLTEGYSRGALAEEFHLRFARALICVAVALIGFSTLM 298
Query: 297 --EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL-PV-------AAALIPVIL 346
+SR R + F+L ++ G G++ PV +P +
Sbjct: 299 LGSYSRLGVWRQALVA-----FLLLILVE-----GLRGVVSEPVRSNPDLWLLIYLPAFI 348
Query: 347 TISLSILIL 355
+++++ L
Sbjct: 349 GLAIAVGFL 357
>gi|78186598|ref|YP_374641.1| hypothetical protein Plut_0723 [Chlorobium luteolum DSM 273]
gi|78166500|gb|ABB23598.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
Length = 442
Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 1/136 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY K + L M ++ + ++ L A + +
Sbjct: 2 KIIDRYILKSLVGPFFLAFLTIMFVLILQFFANFADRFIGR-GIDFMSLIELLALQSAWM 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ ++ F +L TSE+ + RA G+S+++L+ P V+ LL + N
Sbjct: 61 VGLAAPMAVLIGVVMAFGSLTTTSEMTVFRASGLSLYRLMLPVVIVGFLLSLLVERFNNV 120
Query: 123 IATSGEKIGIDLIQQW 138
+ + L+
Sbjct: 121 VQPQVKYKARSLMSDI 136
Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 10/86 (11%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
R +++ + LI A + + +R I + + + ++ ++
Sbjct: 345 RYMAEYHKKYALAFACFVFVLIGAPLGV-LARRGGFGIGAVLSLLFFVLYWVLMITGENM 403
Query: 329 GKSGILLPVAAALIPVILTISLSILI 354
+ G+L P A + ++ + +
Sbjct: 404 AEWGVLPPAVAIWMADVVIAVIGSTL 429
>gi|255321867|ref|ZP_05363017.1| tRNA-I [Campylobacter showae RM3277]
gi|255300971|gb|EET80238.1| tRNA-I [Campylobacter showae RM3277]
Length = 353
Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 58/361 (16%), Positives = 124/361 (34%), Gaps = 31/361 (8%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY Y K + + + ID+ M N + + + T + +
Sbjct: 6 RYVGWLYFKYFVILFIALTLFYVGIDILTNLKDMPASANLKLLYFGLTSLT----AVNYV 61
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + I F++ R++ELV A+GI +L+ P ++ + + V +
Sbjct: 62 LPLALIFALITSKFSMIRSNELVSFYALGIDKNRLIKPPFYIALAITLIYVGLNFTPFAY 121
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ G ++++ N + SDI + F+ + P + +D ID
Sbjct: 122 AYEYGRNIVK--LSNLSRTSSDIFLKFEGK------FVYMDSLNPISGEAKDVRIFDIDS 173
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVV-EYQYGRIPIDKNSTTLNIPI--------KMDGF 237
N + + +D LK+ I + + + P K
Sbjct: 174 SN-LRSATFGESGKFIDDAWLLKEAKIVNLPQNIKLGEKGLDIKTPSGLKTLEGFKPKTI 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA---ASV 294
+ S + ++ + + + + + K +T Y L P M LI V
Sbjct: 233 ESASAENSAITISDAVDYI-LAFKDEGIGLNSTKTTLYNLAFAPFFAPFMVLIIYYFLPV 291
Query: 295 SLEFSRSN-QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ F + I + L+ ++ + +G++ P L+P+IL + +
Sbjct: 292 TGRFFNLALKSFIFTIASLCVWGALFVMMRFAR----NGVVSPEIGVLLPIILLGAYAFY 347
Query: 354 I 354
+
Sbjct: 348 L 348
>gi|119356768|ref|YP_911412.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
266]
gi|119354117|gb|ABL64988.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
266]
Length = 442
Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/197 (13%), Positives = 66/197 (33%), Gaps = 5/197 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY K ++ ++ + + ++ + ++ L + +
Sbjct: 2 KIIDRYLLKSHIGPFIFAFITILFVLILQFFAVFSERLLGK-GIGWMTLLELVVVQSAWM 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ IP L+ ++ F + SE+ I RA GIS+++L+ P ++ + LL + N
Sbjct: 61 VSFTIPMAVLIAVVMAFGAMTNASEITIFRASGISLYRLMAPVLLAATLLSLVAERFNNV 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ L+ + + + + I ++ PE
Sbjct: 121 VLPEANYKAKSLMADIVKSKPVFGLTENAFSTLIDGYS---ILVRQTDPETGAIRGIVIY 177
Query: 183 TIDKKNKIIHRKDADLA 199
+ + A+
Sbjct: 178 DFTRPD-FRTIVTAESG 193
Score = 63.3 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/191 (12%), Positives = 59/191 (30%), Gaps = 7/191 (3%)
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT 227
I ++ ++I + R I V L V G + S
Sbjct: 250 AIRSDDRDLSSGGLLSISRD--FRSRIALAKQRINEPLVHLGSVFGSVPGVSSSKERSMQ 307
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
NI + F S + + +M S+ + +++ + +
Sbjct: 308 SNITKEGRTFAAGYVDKLILSLDQELHRME----SDTGMYNKYMAEYHKKYALAFACIVF 363
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
L+ A + + +R I + + + ++ + + G+L P + + I
Sbjct: 364 ALVGAPLGV-LARRGGFGIGAGLSLVFFVLYWILMISGEKLAERGLLDPGLSMWLGNITI 422
Query: 348 ISLSILILLQK 358
+ + +L +
Sbjct: 423 GFIGLFLLYRL 433
>gi|110598486|ref|ZP_01386757.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
gi|110339936|gb|EAT58440.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
Length = 435
Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY K ++ L+ + + ++ + ++ + S L + +
Sbjct: 2 KIIDRYILKSHVGPFLFAFITILFVLILQFFASFADRFIGR-GIAFSAIVELIILQSAWM 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P L+ ++ F +L SE+ + RA GIS+++L+ P + ++LL + N
Sbjct: 61 VGLAAPMAVLIAVVMAFGSLTTNSEMTVLRASGISLYRLMFPVLCVALLLSLCVERFNNI 120
Query: 123 IATSGEKIGIDLI 135
+ L+
Sbjct: 121 VLPLANYHAKSLM 133
Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 11/86 (12%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
R ++ + L L+ A + + +R + + + + ++ ++
Sbjct: 338 RYMAAYHKKYSLSLACFVFVLVGAPLGV-LARRGGFGVGAGMSLLFFVLYWMLMISGETI 396
Query: 329 GKSGILLPVAAALIPVILTISLSILI 354
+ G+L P+ + + I+ ++ IL+
Sbjct: 397 AERGLLDPMLSMWLGNIVISAIGILL 422
>gi|254225899|ref|ZP_04919501.1| membrane protein, putative [Vibrio cholerae V51]
gi|125621525|gb|EAZ49857.1| membrane protein, putative [Vibrio cholerae V51]
Length = 334
Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 111/344 (32%), Gaps = 19/344 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI EN +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFI----DNIENRKLYNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ I+ D+ + + + + L Y+ +D T + + G
Sbjct: 177 LAPRDSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + ++ +++ RA+ + + I + + + +T++ +S
Sbjct: 237 REVKSAERDWEALPTLSLLNNADR-------RAQAELQWRISLVVCIPLLTMLVVPLSAV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
R + + I + ++ KS + G L +
Sbjct: 290 NPRQGRFAKM-GPAILIYLTYFLALSATKSAIEDGSLPVIIGLW 332
>gi|320101900|ref|YP_004177491.1| permease YjgP/YjgQ family protein [Isosphaera pallida ATCC 43644]
gi|319749182|gb|ADV60942.1| permease YjgP/YjgQ family protein [Isosphaera pallida ATCC 43644]
Length = 392
Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 54/381 (14%), Positives = 118/381 (30%), Gaps = 37/381 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSIS---RGAVLAATRVP 60
IL R + ++K + + L VI ++ G+ + R+
Sbjct: 7 ILDRQRYWSFVKAYVICFSSLVGLYIVIHAFANVDEFGKAAPGLMGVVRAMGFYYLIRIS 66
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
Q+ I ++ I + + ++LV A GIS + + P +V S+L+ + V+
Sbjct: 67 QYYDQLCGVIAMMAAIFTVTFMQKDNQLVAMLAAGISTHRAIRPVLVCSVLVSLLAVINQ 126
Query: 121 NPIATSGEK-IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
I + + + K + + I + D A + I
Sbjct: 127 ELILPRFQTELSLKPDDDGKRPLPVSNLYDLNEIPIHGRKADRARRAMILNATLPIGLTG 186
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN---------- 229
T ++ ++ + D A + L+ L+
Sbjct: 187 TLRELEARDALHIPHDHPTAPLKGG-WLLRGATISPPLEEDEVGPLKKLSRHELNGFPPS 245
Query: 230 ------------------IPIKMDGFQKFS-EQFASRSFYEIIKKMSFSNKSNIFHNYRA 270
I + + E S ++I + + SN +
Sbjct: 246 TLSQAELGGSDEQSYFFFTNITFEMLTRDPKEWMQYASSGQLIA--ALGDPSNAADHLAI 303
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
Q + ++ P + +A+ L N I + Y + + + Y + + +
Sbjct: 304 SIQLHQRLLRPFLSLALLCAVLPSVLGGPNRN-MFISLGYALGTTALFYGGLFLFQYLAT 362
Query: 331 SGILLPVAAALIPVILTISLS 351
G + P+ AA P+ + L+
Sbjct: 363 RGAISPIDAAFAPLAVFSLLA 383
>gi|126667525|ref|ZP_01738495.1| predicted Permease [Marinobacter sp. ELB17]
gi|126627951|gb|EAZ98578.1| predicted Permease [Marinobacter sp. ELB17]
Length = 382
Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/357 (11%), Positives = 120/357 (33%), Gaps = 18/357 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + + + + +++ + E S + A R P +
Sbjct: 15 IIFRYLIRQIMISMIAVSTILLMVFMSGRFLKYLGNAAE-GEISAGVLFSVMAYRFPGFL 73
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++ + + SE+ + A G+S +L ++GS+ + + + +
Sbjct: 74 ELILPLGLFIGILLAYGRMYLESEMTVLLACGVSEGDILRQTLIGSLPVMLVVAAMSLYV 133
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ G K ++ + + + + + P + + + +
Sbjct: 134 SPWGMKQVEEIFNEQRKATEFEL--LAPGRFQDFTSGGRVTYTEGLSDDKRELQGVFIAE 191
Query: 184 IDKKNKIIHRKDADL------AIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
K + + A+ A + + LK Y +D N+T G
Sbjct: 192 FGKNGEGLTIITAETGTQLVDAQTGSRFLILKNGGRYAGNAGQLDYNTTEFEA----YGL 247
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ S + ++ E + + + ++ + ++ +P ++ +TL+A +S
Sbjct: 248 KIVSGKSGTKELEEGLS----TGQLMKSNDPQQRALLHWRFSLPFIVPVVTLLAVRLS-R 302
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + ++ + + G + L ++L + +
Sbjct: 303 VNPRQGRFFHLLPAMLVYITYLGLLIVARDALADGKVPEWIGMFWVHGLFLALGLWL 359
>gi|260432791|ref|ZP_05786762.1| permease YjgP/YjgQ [Silicibacter lacuscaerulensis ITI-1157]
gi|260416619|gb|EEX09878.1| permease YjgP/YjgQ [Silicibacter lacuscaerulensis ITI-1157]
Length = 379
Score = 81.1 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/340 (14%), Positives = 117/340 (34%), Gaps = 23/340 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
YF + L +F L + + ++ + ++ S A +P +I+ ++
Sbjct: 7 YFLRQLLVLFGFFTLVLVGVFWITRSVSLFERVIS-GGQSAMVFLEFTALTLPTLIRTVM 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+R SE+ + A G S W+L ++ ++ G+ ++ + +
Sbjct: 66 PMAVFAAAVYATNRLSRESEMTVMLATGSSPWRLSRGVILFGLIAGLMMAVISVVLRPAS 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ + + Q + +M +P + + +I + + E F S D+
Sbjct: 126 VEQLERRQAEVAGDVTAQLLNEGEFM---HPAPGVTVYIGRIDLDGTLNEVFVSDRRDRN 182
Query: 188 NKIIHRKDADLAIIYNDKVKL--KKVVEYQYGRI-----PIDKNSTTLNIPIKMDGFQKF 240
N + + + + V L V + R + ++
Sbjct: 183 NPATYSSTSAYLLSDDTGVHLVMVDGVALRLDREGNTLSSTQFQDASYDVSELTRKGDIG 242
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-ASVSLE-F 298
+ E+++ + S+ + + + + VA+ ++ A++ L F
Sbjct: 243 RRSIEAVPTSELLRDLDAVAASDGYPRGELVEELHQRFSWIAICVAVAMVGYATLMLGSF 302
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
SR IF+ F + ++ G G + P+
Sbjct: 303 SRFGLWPQ-----IFAAFTILVLLE-----GVRGFVSPIV 332
>gi|54307698|ref|YP_128718.1| putative permease [Photobacterium profundum SS9]
gi|46912121|emb|CAG18916.1| putative permease [Photobacterium profundum SS9]
Length = 366
Score = 81.1 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/358 (12%), Positives = 113/358 (31%), Gaps = 19/358 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L ++ I + + L +P +
Sbjct: 2 IIVRYLTRETLKSQLAVLFVLFLVFISQKFIRILADATD-GSIPGDLILTLMGLYMPSMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ ++ +++ G +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIQAALLLAMITGSVAAFNSLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + ++++ + + + P + I + E
Sbjct: 121 APWSSEQETQVMERVESDVGLDLLVKGQF--QPAPDGKGVVFVNDITDKGSKLEKVFVAQ 178
Query: 184 IDKKNKII-HRKDADLA---IIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
I ++ + A+ + + + + LK Y+ +D + T + G
Sbjct: 179 IVARDTMRPSVMVAERGYVSELDDGRQVLDLKDGTRYEGVPTRLDYSVTEFENYQALIGQ 238
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV-AMTLIAASVSL 296
+ E+ M S + +F + I + + + +T++ +S
Sbjct: 239 RAIREKNRDWDALPTPTLMQHSELAA-------RAEFQWRISM-FLCIPLLTMVVVPLSS 290
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + I+ KS + G L ++I +
Sbjct: 291 VNPRQGRFAK-LFPAVLIYLVYFLAISAAKSAVEDGSLPSYIGLWSINAAMFVVAIAL 347
>gi|162149095|ref|YP_001603556.1| permease [Gluconacetobacter diazotrophicus PAl 5]
gi|209545162|ref|YP_002277391.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787672|emb|CAP57268.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
gi|209532839|gb|ACI52776.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 398
Score = 81.1 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/362 (13%), Positives = 123/362 (33%), Gaps = 22/362 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
+L RY + L L G L+++ + + E S+ L + VP
Sbjct: 18 LPMLDRYVLRQLLVALLATTGGLSALIWLTQSLHFVSLVVER-GLSLRVFIGLTSLLVPS 76
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P T +V V+ L EL + RA G+S + + ++ + + + +++
Sbjct: 77 FVAVILPITTFIVVQFVYQRLAGDRELTVMRAAGLSPFFIARAGLLCATISVVSCMILNI 136
Query: 122 PIATSGEKIGIDLIQQWKDN--------GDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
I Q ++ G + + + +D + + +
Sbjct: 137 WIVPLSFHAFKQYEFQIRNRMAAFMLQEGVFTPVSPTMTVYVRSRDRDGTLHGIVVEDDR 196
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
T + ++ ++ + ++Y+ ++ ++ + GR+ + S
Sbjct: 197 QPDNPSTVL--AQRGTMLVVDNQPRVVLYDGS---RQEIDRKSGRLNVLTFSRNTIDLTS 251
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
G Q S +E++ + + + + + P + ++
Sbjct: 252 SRGDQARFRDATEMSLHELLH--PDPQEVAPRDRGKFAVEAWRRLTAPFTAFSFAMVGLV 309
Query: 294 VSLE--FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG--KSGILLPV-AAALIPVILTI 348
L FSR I A I S L + ++++ + ++ + A++P I
Sbjct: 310 AVLRGAFSRHGNI-IRPAVAILSVVSLLALSLMVQNLASRNTSLIPLMWVEAILPGIACA 368
Query: 349 SL 350
+
Sbjct: 369 LM 370
>gi|90411866|ref|ZP_01219874.1| putative permease [Photobacterium profundum 3TCK]
gi|90327124|gb|EAS43496.1| putative permease [Photobacterium profundum 3TCK]
Length = 366
Score = 81.1 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/357 (13%), Positives = 117/357 (32%), Gaps = 17/357 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L ++ I + + L +P +
Sbjct: 2 IIVRYLTRETLKSQLAVLFVLFLVFISQKFIRILADATD-GSIPGDLILTLMGLYMPSMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ ++ +++ G +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIQAALLLAMITGSVAAFNSLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + ++++ + + + P + I + E
Sbjct: 121 APWSSEQETQVMERVESDVGLDLLVKGQF--QPAPDGKGVVFVNDITDKGSKLEKVFVAQ 178
Query: 184 IDKKNKII-HRKDADLA---IIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
I ++ + A+ + + + + LK Y+ +D + T + G
Sbjct: 179 IVARDTMRPSVMVAERGYVSELDDGRQILDLKDGTRYEGVPTRLDYSITEFEDYQALIGQ 238
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ E+ M S + RAE Q+ + + + L+ M ++ +S
Sbjct: 239 RAIREKNRDWDALPTPTLMQHSELAA-----RAEFQWRVSMFLCIPLLTMVVV--PLSSV 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + I+ KS + G L ++ ++I +
Sbjct: 292 NPRQGRFAK-LFPAVLIYLVYFLAISAAKSAVEDGSLPSYIGLWSINVVMFVVAIAL 347
>gi|317013268|gb|ADU83876.1| hypothetical protein HPLT_07455 [Helicobacter pylori Lithuania75]
Length = 355
Score = 81.1 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 56/359 (15%), Positives = 130/359 (36%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+++ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFKFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + ++++ +IG S Q+L+P + S+ V +
Sbjct: 59 YTLPISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E+ +LI +KDN ++ D ++ KI P ++ +
Sbjct: 119 VYMEEKTQNLI--YKDNSLSVSEHLLV------KYNDDYVYFDKINPLLQKAQNIKVFRL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ----YGRIPIDKNSTTLNIPIKMDGFQ-- 238
K + +A A L Y+ + ++T L + F+
Sbjct: 171 -KDKTLESYAEAKEAFFEYKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPK 229
Query: 239 ----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + A ++ + ++ + + Y ++P + ++++ A
Sbjct: 230 VLDTIYQNKPAVSITDALLSLHALMRQNA--DTKKVRSFLYVFAILPFFVPFLSVLIAYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S +R ++ I +++ + + F SGIL+P L P + ++LS+
Sbjct: 288 SPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALSLW 346
>gi|94985285|ref|YP_604649.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
gi|94555566|gb|ABF45480.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
Length = 381
Score = 81.1 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/389 (12%), Positives = 119/389 (30%), Gaps = 48/389 (12%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L + G ++ ++ L + ++P +
Sbjct: 4 LTRYVTRELLPPLVA---GTLLFTAILSFGYFFISSQWLRGVPVGLIGQWIGYQLPDTLV 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P +++ +V F L ELV ++ GI + Q+ P V + L+ V + +A
Sbjct: 61 KVLPMAVVLMTVVAFGRLATERELVAVQSGGIGLGQVARPVAVVAALVTALAVWLSLWVA 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L + + + ++ + ++
Sbjct: 121 PRANVETRGLYWDVLTGAGLSQVVG----KTVDLGDNLTLWLGGYDAAGRKLQNVRVERW 176
Query: 185 DKKN-KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-------------------- 223
K + + AD N+++ L+ Y +
Sbjct: 177 AKDDPQRTTVIFADSGTFENNRLSLRGYQVYTVNYAAAARLARVPENDPAAFRTAVQEVF 236
Query: 224 --------NSTTLNIPIKMDGFQKFSEQFASRSF-----YEIIKKMSFSNKSNIFHNYRA 270
S+TLN+ + Q ++ + E+I K++ S + A
Sbjct: 237 PNVVLPEDASSTLNLDTGLSRKQTIAQYADAIGADAEGWPELITKLTAPGVS-VQERQDA 295
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
+ +P + + L A +L F R+ + + + Y + + +
Sbjct: 296 RVNLNRKLALPFGNLVLALAALPFALRFGRT--LGVSLGIALLIAVAYYLVFFVGLTL-- 351
Query: 331 SGILL--PVAAALIPVILTISLSILILLQ 357
+G P + ++ L + +L +
Sbjct: 352 AGAFPRLPEVGVWLANLVFAGLGLWLLRR 380
>gi|23008753|ref|ZP_00050063.1| COG0795: Predicted permeases [Magnetospirillum magnetotacticum
MS-1]
Length = 339
Score = 81.1 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/330 (13%), Positives = 106/330 (32%), Gaps = 26/330 (7%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ L L L+G ++V + + ++ + +P +I
Sbjct: 4 IERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAKGQ-TLLVFLFITGLSLPTLIT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I P + + LN SEL++ A G+ QLL PFV ++ + + T + +
Sbjct: 63 VIAPVALFIACVYALNRLNGDSELIVMSAAGMPPRQLLRPFVTLALAISVVTAFLTIQVM 122
Query: 125 TSGEKIGIDLIQQWK----------DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
S + D++ + + S I + + + + ++
Sbjct: 123 PSSFQELRDVLTRVRGDFVANVVKEGQFTALDSGITFHFRERGADGSL----QGLFIQDK 178
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN--IPI 232
+ + ++ ++ ++ + ++ + ++ + L P
Sbjct: 179 REAGKAVVYLAERGRVTEVDGQTYLVLEKGSIHRQQKDSRDSSIVSYERYAVDLAAFTPP 238
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN---YRAETQFYFLIVIPLMLVAMTL 289
+ K E+ + ++ + + F R FY L+ L +A
Sbjct: 239 DSETVYKPRERSTLALLFPDTREGYYVLQKGRFWAELDERLSAWFYPLV---LAFIAFDR 295
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFS---GF 316
+ + R V + GF
Sbjct: 296 LGDPRTTRQGRGMAVAGAVLGVVGLRIGGF 325
>gi|254282226|ref|ZP_04957194.1| queuine tRNA-ribosyltransferase [gamma proteobacterium NOR51-B]
gi|219678429|gb|EED34778.1| queuine tRNA-ribosyltransferase [gamma proteobacterium NOR51-B]
Length = 389
Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/280 (12%), Positives = 93/280 (33%), Gaps = 22/280 (7%)
Query: 51 GAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI 110
+ ++P + I+P + ++ L SELV+ +A G+ +L ++ ++
Sbjct: 75 LLPVMLFKLPSFFELILPLGLFIGILLSLGRLYADSELVVLKACGVGPGKLATYLLLPAL 134
Query: 111 LLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL 170
+ + +A G ++ + Q+ + + + + A+ I
Sbjct: 135 AFSLVVGFLSLYLAPEGSARAQAMLDNPRSAEGLQQLSEGRFKKQRS--GNFVSYAETIS 192
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLA-----IIYNDKVKLKKVVEYQYGRIPIDKNS 225
+ + + + + R A N + L+ +Y +P +
Sbjct: 193 DDG-VMHNIFVVEKSEAGTARTRVTYADAGEVVVDPENGRRYLELRDGARYEGVPGQADY 251
Query: 226 TTLNI----PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
T + + + + + + FS + + Y+ +P
Sbjct: 252 TVTKFKRYGELIPEREGGIRDNLKTDAISTRLLLSDFSPSA--------QAALYWRFSLP 303
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTI 321
+++ ++LIA +S +R + + F+ Y I
Sbjct: 304 VLVPVISLIALPLSRTDARRGRYAKLAPA--LLVFLAYFI 341
>gi|37528301|ref|NP_931646.1| hypothetical protein plu4480 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787739|emb|CAE16852.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 366
Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 54/360 (15%), Positives = 126/360 (35%), Gaps = 25/360 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L EI E N + L VP +
Sbjct: 2 IIIRYLVRETLKSQVAILFILLLIFFCQRLVEILGAAVE-GNVPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ L+ ++ ++L + + +
Sbjct: 61 QLILPLSLFLGVLMTFSKLYTESEITVMHACGLGKRVLVVSALILALLTSALAAVNVIWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQ---------KSDIIPWMQISNPQQDIFIGAKKILPENH 174
K ++ K N D + I N + F
Sbjct: 121 MPWSSKYQEQVVADAKANPSLAAIMEGRFKPSEDGNLVLYIGNVHGNKFENVFLAQLRPV 180
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ + + I ++ R D ++ N + + + RI ++ +
Sbjct: 181 DNQRPSVV-ISNGGHMVERPDGKQVVVLNHGTRYEGTAMLRDFRITEFRDYQAIIGHQTS 239
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
EQ + ++ K S +F++ + + L ++ M ++ +
Sbjct: 240 IVDNNKVEQKSIIQLWQDNDKDS-------------RAEFHWRLTLVLSVLIMAMMVVPL 286
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S+ R + + + + + + + + ++S G G L P+ + + L++++
Sbjct: 287 SVVNPRQGRV-LSMLPAMLLYLIFFLLQSSLRSNGSKGKLDPMIWMWLTNGTYLMLALVL 345
>gi|319898731|ref|YP_004158824.1| permease, YjgP/YjgQ family [Bartonella clarridgeiae 73]
gi|319402695|emb|CBI76241.1| putative permease, YjgP/YjgQ family [Bartonella clarridgeiae 73]
Length = 385
Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 56/367 (15%), Positives = 140/367 (38%), Gaps = 26/367 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y K ++GA+ + + + + N + + ++ +P +
Sbjct: 3 ILELYILKRIFLLFSAVMIGAIGISWTVQILARINFLTT-SGQTFLTVLHFSSLLIPSVT 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++PF ++ ++ +N+ SEL + A GI + P ++ +IL + + + N I
Sbjct: 62 SLVMPFGLVIAITIILSTMNQDSELAVISASGIPKNIIWKPILLLAILTSLTSFSITNFI 121
Query: 124 ATSG--------EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
A + DLI + G Q+ +++I + IG ++ +
Sbjct: 122 APNARLNMRQMLANTHSDLINLFIREGSFQELTKNLYIEIGETNTNGTIG--RLFIADQR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKM 234
F KK I++ K + I+ + +++ ++Y+ + I K +S T ++ +
Sbjct: 180 DRQFGLFYYAKKGIIVNNKKGNFLILNDGEIER---IDYKNDNVSIIKFSSHTFSLSEFI 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + R + ++ + +F+ + L + LIA ++
Sbjct: 237 TNKRTPNIYPKDRPL-SYLSNPDPNDPHYQRKPLQYRAEFHRRLTECLYPIVFALIAVAI 295
Query: 295 -----SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
S + + ++++ + + K + + +P+ IP+ ++I
Sbjct: 296 AGDARSYRQTHISSTFSVISFSLLI---YWLGYFFAKKTENNPVYIPLLYI-IPIGISIL 351
Query: 350 LSILILL 356
+ +LL
Sbjct: 352 -TFFMLL 357
>gi|325292487|ref|YP_004278351.1| permease protein [Agrobacterium sp. H13-3]
gi|325060340|gb|ADY64031.1| putative permease protein [Agrobacterium sp. H13-3]
Length = 389
Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 57/368 (15%), Positives = 127/368 (34%), Gaps = 29/368 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L Y + + L LL + +++ I + + N + + S+ LA +P +
Sbjct: 2 KLLENYILRRTTQMFLVALLPVLAIIWTIQVLQRINLVTD-TGQSMGSFMALATMILPTL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I ++PF ++ F +N SEL I A G S + P ++ + +L + + N
Sbjct: 61 IPVVLPFALVIGITQTFTAMNNDSELAIIDAAGSSRSVMFRPVIILAAVLSALSFTITNF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED-FTS 181
I ++ + + + + + + + + I + F +
Sbjct: 121 IEPPARNSARQMVAAAYADLLSSVIEEKTFRAVQDG-----LYVQIAQRQGRILKGLFVA 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D +I+ A +I L + P K S + D
Sbjct: 176 DRRDPNFDLIY--YAKEGMIDESGTSLTMRDGEVQQKTPDGKVSIVKFLSYAFDLSTMSE 233
Query: 242 EQFASRSFYEIIKKMSF------SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+Q + S + F +N S ++ + + + A LI+ ++
Sbjct: 234 KQTSEPSLSPGDASLGFLLSPDENNASYKRSPESFRSELHKRLSDWMFAFAFALISLVIA 293
Query: 296 LEFSRSNQPRII--VAYGIFSGFM-----LYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+RS++ + + + + FM Y + +S + + V A L+
Sbjct: 294 A-DARSHREARMHPMVAALVTAFMLRWLGFYVTNQVKQS---AAFIPLVYAV---PGLSG 346
Query: 349 SLSILILL 356
+ + IL+
Sbjct: 347 AAAAFILI 354
>gi|153808346|ref|ZP_01961014.1| hypothetical protein BACCAC_02640 [Bacteroides caccae ATCC 43185]
gi|149129249|gb|EDM20465.1| hypothetical protein BACCAC_02640 [Bacteroides caccae ATCC 43185]
Length = 638
Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/193 (14%), Positives = 62/193 (32%), Gaps = 6/193 (3%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
+K+ + +G + I + + + EL + S A ++ +P
Sbjct: 17 IVKSFMMLFVGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLVPVSLPL 76
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ +++ F N EL+ +A GIS+ +++ P V L + N + +
Sbjct: 77 AVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLVFFVCGLVGISFYFQNVVGPIAQA 136
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
LI K + + + K + + D + + +
Sbjct: 137 KLGTLILSMKQKSPELDIPEGVFYSEIPDYN---LKIAKKNRKTGMLYDVLIYDLKEGFE 193
Query: 190 IIHRKDADLAIIY 202
AD +
Sbjct: 194 KARVIYADSGRLE 206
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 1/98 (1%)
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
S++ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 362 SYTMETNDYAIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLVFI 420
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I + G + + L I +
Sbjct: 421 IYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGIFL 458
>gi|291296718|ref|YP_003508116.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
gi|290471677|gb|ADD29096.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
Length = 346
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 48/342 (14%), Positives = 112/342 (32%), Gaps = 15/342 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY K + L L ++ + L E+ + + A RVP +
Sbjct: 3 VLDRYLIKEVGASVLGALAVVVLALLGGALYEVLAPLLAR-GADPWVVSQYLAFRVPEAL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L ++V + SEL A G+S ++L P ++ LL + + + +
Sbjct: 62 VRGAPLAFLFALLLVLSRMGEESELKAMLAGGVSKLRVLFPLLLLGTLLFVICLAAADSL 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ G ++++Q + ++ + I + T+
Sbjct: 122 VPRSLQQGQNVLRQAVLQKPRALLQPGT--RLVDAYGRIVYVGEVSDAGIGQVRVITA-- 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
A+ + L + G P ++ +
Sbjct: 178 -------EEILVAEQGRFEQGTLVLSQGMRVTYGGARPRTVARFERATVPLVELSLEPPG 230
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S + E+ ++++ ++ + T + P + + + A ++ F
Sbjct: 231 GLFSLTVAELRQRIA-QYRAQGLPYHAELTALHRKWAEPAAVYSFAIFAVGLAF-FLLGG 288
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ + + F+ Y ++ + G+ G+L P+ AA P
Sbjct: 289 SRSLGMLGVVVLTFIYYATWSVGRIMGEQGVLHPILAAWGPN 330
>gi|254498611|ref|ZP_05111330.1| permease [Legionella drancourtii LLAP12]
gi|254352151|gb|EET10967.1| permease [Legionella drancourtii LLAP12]
Length = 359
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 57/368 (15%), Positives = 130/368 (35%), Gaps = 34/368 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATRVPL 61
I++RY + T + +++ L + N+ G +P I + +L
Sbjct: 2 IIFRYLAREVFVTLIALTSILVLIFLSNQLIQYLNRAASGTIPGVIIMKLMMLELP---T 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ ++P + +V + L SE+ + RA G QLL + +I + + V+
Sbjct: 59 LLSLLVPLGFYIAMLVAYGRLYAESEMTVLRACGYGPNQLLQHSFIMAIGVALIVAAVMI 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQK-SDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ I I+ + + G + I+P + + + ++ E
Sbjct: 119 WASPY---IYIERAKLLRTTGIQTLVQTIMPGRFHAAHNGQEVFYVQSMSRDHSKAEHVF 175
Query: 181 SITIDKKNKIIHR-------KDADL-AIIYNDKVKLKKVVEYQ--YGRIP---IDKNSTT 227
K+ + A+ A D + L+ EYQ G +
Sbjct: 176 LAKRSKEKNKMRWDVLWADKAFAETDAKTGEDYIILQDGKEYQGTPGHADYQISEFGEYK 235
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+P + F++ S + + + K+ + + + +P+M++ +
Sbjct: 236 ARLPHPIVKINDDLRTFSTASLWPLNN--ADPGKAA---------ELQWRLSVPIMVLTL 284
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
TL+A +S SRS + + I + ++ I + SG + L
Sbjct: 285 TLVAVPLSRINSRSGKYAK-LFPAIIIYILYANLMFIGRDAIVSGKIPQWLGLWWIHFLV 343
Query: 348 ISLSILIL 355
++L + ++
Sbjct: 344 VALGLFLI 351
>gi|296104924|ref|YP_003615070.1| permease YjgP/YjgQ family protein [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059383|gb|ADF64121.1| permease YjgP/YjgQ family protein [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 359
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 45/323 (13%), Positives = 108/323 (33%), Gaps = 30/323 (9%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ L +P + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 34 GEIPTNLVLSLLGLGIPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 93
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ GI + + + +++ + K N + +
Sbjct: 94 AAMILALFTGIVAAVNVMWAGPMSSRHQDEVLAEAKANPGMAALAQGQF--QQATDGNSV 151
Query: 164 IGAKKILPENHIWEDFTS------------ITIDKKNKIIHRKDADLAIIYNDKVKLKKV 211
+ + + + + D + + ++ RKD + N + +
Sbjct: 152 LFIESV--DGSKFNDVFLAQLRTKGNARPSVVVADSGQLAQRKDGSQVVTLNKGTRFEGT 209
Query: 212 VEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE 271
+ RI +N + + +EQ R+ + RA
Sbjct: 210 AMLRDFRITDFQNYQAIIGHQAVALDPTDTEQMDMRTLWN-------------TDTDRAR 256
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS 331
+F++ I + + M LI +S+ R + + + + + + + T ++S G
Sbjct: 257 AEFHWRITLVFTVFMMALIVVPLSVVNPRQGRV-LSMLPAMLLYLIYFLLQTSIRSNGAK 315
Query: 332 GILLPVAAALIPVILTISLSILI 354
G L P+ L I L++ +
Sbjct: 316 GKLDPMVWTWFVNSLYILLALGL 338
>gi|332708721|ref|ZP_08428693.1| putative permease [Lyngbya majuscula 3L]
gi|332352575|gb|EGJ32143.1| putative permease [Lyngbya majuscula 3L]
Length = 116
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
Query: 247 RSFYEIIKKMSFSNKSNIFHNYR-AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ + I+ + + R + + I P + + L+ AS+S+ R ++
Sbjct: 1 MNILQAIEMIQLLKVAGDRKKLRMLQVRMQQKIAFPFICIIFGLVGASISIRPKRISK-G 59
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ F Y + ++ FG +GIL P+ AA +P + +L + E
Sbjct: 60 TSFGVCLIVIFGYYLLSFVIGGFGIAGILSPIVAAWLPNLFGFGAGGWLLWRLE 113
>gi|156935580|ref|YP_001439496.1| hypothetical protein ESA_03444 [Cronobacter sakazakii ATCC BAA-894]
gi|156935598|ref|YP_001439514.1| hypothetical protein ESA_03463 [Cronobacter sakazakii ATCC BAA-894]
gi|156533834|gb|ABU78660.1| hypothetical protein ESA_03444 [Cronobacter sakazakii ATCC BAA-894]
gi|156533852|gb|ABU78678.1| hypothetical protein ESA_03463 [Cronobacter sakazakii ATCC BAA-894]
Length = 370
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 51/351 (14%), Positives = 123/351 (35%), Gaps = 31/351 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++L GI + +
Sbjct: 61 QLILPLSLFLALLMTLGRLYTESEITVMHACGLSKAVLVKAAMVLALLTGIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS-- 181
+ +++ + K N + + + + + + D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQF--QQATDGNAVLFIESVN--GSKFNDVFLAQ 176
Query: 182 ----------ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+ + ++ RKD + N + + + RI K+ +
Sbjct: 177 LRPKGNARPSVVVADSGELSQRKDGSQVVTLNQGTRFEGTAMLRDFRITDFKDYKAIIGH 236
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ +EQ ++ ++ ++ A +F++ + + ++ M L+
Sbjct: 237 QAVALDPDDAEQMDMKTLWQ-------------ANSKSARAEFHWRLTLVFAVIVMALMV 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+S+ R + + + + + + + T ++S G G L P+
Sbjct: 284 VPLSVVNPRQGRV-LSMLPAMLLYLIFFLLQTSLRSNGAKGKLDPLIWMWA 333
>gi|291277020|ref|YP_003516792.1| inner membrane protein OxaA [Helicobacter mustelae 12198]
gi|290964214|emb|CBG40063.1| putative integral membrane protein [Helicobacter mustelae 12198]
Length = 354
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 54/355 (15%), Positives = 123/355 (34%), Gaps = 22/355 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + + + L I ID + +Q S + + A + +
Sbjct: 4 YLGRQFFRFILIVFSALEIFFISIDSLKYLDQFPS----SANLIVLFFAYDFLYALNYTL 59
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P L+ I+ + NL ++++ A+G + Q+L P S+ V +
Sbjct: 60 PISILLATIIFYLNLVKSNQYTAFLALGYTRKQILAPVFFISLTFTFLYVGLNATPFVYA 119
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
++ ++ Q + + ++ ++ +K+ P E+ +DK+
Sbjct: 120 QERAEAIMSQENFTNITEDLLVKY--------ENNYVYFQKLYPLIKRAENIKVFELDKQ 171
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQ-YGRIPIDKNSTTLNIPIKMDGFQKFSEQF-- 244
++ A AI ++ L + + K ++ K+ + F +
Sbjct: 172 GRLQSFAQAKDAIFLHNYWVLSHASISKVPEETTLGKAGLEVSEVDKLKILKGFRPKILD 231
Query: 245 ------ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
S S + I+ + ++ ++ + Y I+IP + ++I +
Sbjct: 232 TIYQNKPSVSIIDAIQSLIIL-QNQDSNSEKIRAILYAFILIPFFVPLTSIIIGFYAPTL 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
SR + ++ I +++ + SG+L P LIP L LS+
Sbjct: 291 SRYSNLALLGFMFIVLALVIWGLFFAFGKLSISGLLPPEIMMLIPFGLLCVLSLF 345
>gi|197121803|ref|YP_002133754.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. K]
gi|196171652|gb|ACG72625.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. K]
Length = 371
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/363 (11%), Positives = 122/363 (33%), Gaps = 13/363 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G++ RY + L LL ++ + + + S+ ++ + +P +
Sbjct: 2 GLIDRYLAREILLPFAAALLFLTQILLATQILGQADVLFG-SGVSLVDVGLVMLSLMPHL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +IP L+ ++ L E+V A G+S +L+ ++ +++ +
Sbjct: 61 LGYVIPVAFLLGVVLGVGRLAEDREVVALGAAGLSPVRLVRVPLLLGLVVAALGAWLSLS 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK-----KILPENHIWE 177
+ + + + + + A+ +L ++
Sbjct: 121 VEPASIRAARLRLNEVVKRNVTNDVRGGTFYDQIPGYTIYAERARGGRWENVLIQDRSNP 180
Query: 178 DFTSITIDKKNKIIHRKDADLA---IIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
D + + + ++ A ++ +V ++V Y K + + +
Sbjct: 181 DAPMLALSRHGRL-EPVGAGQDMRLVLEQGEVHREEVGTADYASAAFGKAELLVGLGTAL 239
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSN-IFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
++ + ++ + + + + + R E + + PL++VA L+
Sbjct: 240 SDRNVLAKSSREATVSDLRARAAAAREKGDVVEARRQEGYLHRKLSAPLVVVAFALLGVP 299
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
L R + + Y ++ + + G L A +P ++ ++ +
Sbjct: 300 --LGAERRGGRAFGMGATFLLVVVHYLLLRGGEVLTQLGHLPAAFALQLPNLVLGAVGVG 357
Query: 354 ILL 356
++L
Sbjct: 358 LVL 360
>gi|298291096|ref|YP_003693035.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
gi|296927607|gb|ADH88416.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
Length = 385
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 52/327 (15%), Positives = 122/327 (37%), Gaps = 25/327 (7%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY F+ L LL +++++ + M +I + + +P +I
Sbjct: 4 LDRYVFRSAASAFLGTLLVLTLMIWITQALRELDIMTT-QGQTILAFVFITSLALPALIL 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ P + F +N SE+V+S A GIS W+ L P V+ ++++ ++ +
Sbjct: 63 GLAPAALFMAVAYTLFRMNSDSEIVVSSAAGISTWRFLRPLVILALIVAACCSVLSLELV 122
Query: 125 TSGEKIGIDLIQQWK----------DNGDKQKSDIIPWMQISNPQQD---IFIGAKKILP 171
+ + I + + ++ ++ N IFI +
Sbjct: 123 PAAMRQFRYEISRVRADVVAFIAQPGRFTTLADGMVFHVRERNANGVLGGIFINDARDPK 182
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+ + + + ++ +++ KD I+ + + + + + + L+ P
Sbjct: 183 QTNTY-------LAERGQVVDNKDGTFLILEEGAIHRRTPGKPDSNVVEFQRYAFDLS-P 234
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+G RSF E++ + I + R + + + +PL ++A I
Sbjct: 235 FTSNGENAVYRAPE-RSFRELLN-PDPKDYVYILESGRFTEELHRRLSLPLYVLAFFGI- 291
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFML 318
A +L R+ + +A + F++
Sbjct: 292 ACAALAEPRTTREGRGLALAATTPFVI 318
>gi|229527563|ref|ZP_04416955.1| hypothetical protein VCG_000632 [Vibrio cholerae 12129(1)]
gi|229335195|gb|EEO00680.1| hypothetical protein VCG_000632 [Vibrio cholerae 12129(1)]
Length = 349
Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 112/344 (32%), Gaps = 19/344 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI EN +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFI----DNIENRKLYNVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ I+ D+ + + + + L + Y+ +D T + + G
Sbjct: 177 LAPRDSILPSVMFSHSGDVKELSDGRQIITLYEGTRYEGVPTRVDYMITNFDSYDGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + ++ +++ RA+ + + I + + + +T++ +S
Sbjct: 237 REVKSAERDWEALPTLSLLNNADR-------RAQAELQWRISLVVCIPLLTMLVVPLSAV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
R + + I + ++ KS + G L +
Sbjct: 290 NPRQGRFAKM-GPAILIYLTYFLALSATKSAIEDGSLPVIIGLW 332
>gi|260772182|ref|ZP_05881099.1| predicted permease [Vibrio metschnikovii CIP 69.14]
gi|260613049|gb|EEX38251.1| predicted permease [Vibrio metschnikovii CIP 69.14]
Length = 367
Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 43/341 (12%), Positives = 104/341 (30%), Gaps = 13/341 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + A +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPARMILSIVALNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +I+ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLAIITSSAAAFNAFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + LI+Q + +P + I EN ++
Sbjct: 121 SPWSQDKEAQLIEQLAAESSVDLLQKGQF--QRSPDGSSVVFIDNI--ENRKLQNVFVAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + I+ +D + +L + + + + F ++
Sbjct: 177 LAPRQSILPSVMFSDSGEVK----ELSDGRQMITMHNGVRYEGVPTRLDYMITRFDQYEG 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
RS + + + + RA+ + + I + L + +T++ +S R
Sbjct: 233 LIGQRSVKAKGRDWQETPTLALIRNPDSRAQAELQWRISLVLCIPLLTMLVVPLSAVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ + I + I+ MKS + G +
Sbjct: 293 QGRFAKM-GPAILIYLTYFLTISAMKSALEDGTIPIEIGMW 332
>gi|254427836|ref|ZP_05041543.1| putative permease, YjgP/YjgQ family [Alcanivorax sp. DG881]
gi|196194005|gb|EDX88964.1| putative permease, YjgP/YjgQ family [Alcanivorax sp. DG881]
Length = 372
Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 44/331 (13%), Positives = 112/331 (33%), Gaps = 22/331 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+P IL RY + TT+ ++++ + + ++ A R+P
Sbjct: 3 LPLILHRYINRQVFMTTVLVTFILVMVLVSGRFIKYL-AEAAAGEIAADALFLVMAFRMP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+Q I+P + ++V ++ +E+V+ +A G +++ VV ++ +
Sbjct: 62 EFLQMIVPLSLYIALLLVLGRMHMDNEMVVLQAGGQGNGRVVRSLVVPILMATTLVGMFS 121
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ G+ + ++ KD + + + A+ + E + E+
Sbjct: 122 LYVTPRGDAEVNRIFEEQKDRSVLELLTPGRFHVKGSSDSQRATYAEHLNREKGVLENVF 181
Query: 181 S--ITIDKKNKIIHRKD--ADLAII----YNDKVKLKKVVEYQYGRIPIDKNS---TTLN 229
+ + + A + + L +YQ +D
Sbjct: 182 VADARFESQGEAGRLLTVWAKSGKLVVEEGISYLLLTDGFQYQGKPGQLDYKEVGFKEAR 241
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ I + + RS E++ + + + + + + + + L + M L
Sbjct: 242 VRIGGEKTDSRPPKVRGRSTQELVDQRADNKAA--------LAELQWRLSLILTVPIMAL 293
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
A ++ R + ++ G+MLY
Sbjct: 294 AAIPLARVNPRQGRFYRLIPA--VLGYMLYV 322
>gi|312113656|ref|YP_004011252.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
17100]
gi|311218785|gb|ADP70153.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
17100]
Length = 387
Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 42/356 (11%), Positives = 118/356 (33%), Gaps = 31/356 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY F+ + L+ ++V++ L ++ + + A +P +I
Sbjct: 2 LISRYIFRQTASALIMILVSLTLIVWLTSLLREI-KLLTAQGQTFLLFLQITALAIPSLI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ P L+ + L+ SEL++ A G S+W+L +P++ ++++ + + +
Sbjct: 61 VTVAPVAFLIAALHSLNRLSGDSELIVLSAAGSSVWRLFSPYLFLAVVVSMCVLTANLFV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS-- 181
+ ++ D + Q + + Q P + AK +N
Sbjct: 121 LPNAARLLGDTVSQVRADVLSQVIQPGE-FSDLEPGLTFHMRAK---GDNGELLGVVVRD 176
Query: 182 --------ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
I ++ +I+ ++++ ++ ++ + + + +
Sbjct: 177 ERDPKAVTTVIAEQGQILQDGGRASMMLHDGQIIRQQAEKTAAQVVVFTSYAFDIGDFSA 236
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR--AETQFYFLIVIPLMLVAMTLIA 291
G ++ +I + + +S + N + ++ + L +A +IA
Sbjct: 237 KKGPRERK-----PRERDIGELLFPDKESPAYTNTKGSFRSEIHERFSGALYPIAFAIIA 291
Query: 292 A-----SVSLEFSRSNQPRIIVAYG----IFSGFMLYTIITIMKSFGKSGILLPVA 338
+ R+ G I + + + G +
Sbjct: 292 VLYLGRPKTTREGRTGNLFTAFTLGAAIRIAGIAGVNIVGKKAWALGLIYGIPVAV 347
>gi|330994316|ref|ZP_08318244.1| putative permease [Gluconacetobacter sp. SXCC-1]
gi|329758783|gb|EGG75299.1| putative permease [Gluconacetobacter sp. SXCC-1]
Length = 410
Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 50/377 (13%), Positives = 119/377 (31%), Gaps = 35/377 (9%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P + RY + + L M + + L + N + + + A+L+ +P
Sbjct: 16 PTTMDRYLLRQVVPPFSIALGVVMAALLLERLLVLFNLLAANGSSMKTFFALLSDL-IPH 74
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P V V ++ E+ A G+SI+++ PFV+ + G +
Sbjct: 75 YLGLALPAAMCVSVFSVIRRMSANHEIDALMASGVSIFRICQPFVLTGAIFGFLAFSLYG 134
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I G ++ DI + A+ + +
Sbjct: 135 FIQPYARYDYRSAFYFASHAGWTPHLQS----KMFALSDDIVLTAENVDHAGSRMWNV-F 189
Query: 182 ITIDKKNKIIHRKDADLAIIYN------------DKVKLKKVVEYQYGRIPIDKNSTTLN 229
I + A ++N D + + + + ++
Sbjct: 190 IRDGTDKAHVRFISAQKGYLFNPADGSNIRLDLVDGTVITDSQDKPPTITSFSRTTRMIS 249
Query: 230 IPIKMDGFQ-----KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
K+D + + Y I+ I H+Y + F + +
Sbjct: 250 TKGKLDTEAYRKRGETERELTVPELYYGIRY----GNPTISHSY-MIAELNFRLARTAAI 304
Query: 285 VAMTLIA-ASVSLEFSRSNQPRIIVAYGIFSGF--MLYTIITIMKSFGKSGILLPVAAAL 341
+ ++A A + + N P + +A GF L ++ + + + P+
Sbjct: 305 PFIPILACALAGVRKRQKNNPGLAIAAITLVGFDHTLQMGMSFVANM----HMSPLLVIW 360
Query: 342 IPVILTISLSILILLQK 358
+P ++ + + +L+++
Sbjct: 361 LPTLVFSLICVGVLIRQ 377
>gi|327481779|gb|AEA85089.1| permease [Pseudomonas stutzeri DSM 4166]
Length = 373
Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/363 (12%), Positives = 119/363 (32%), Gaps = 21/363 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ R+P +
Sbjct: 2 IVFRYLSRELLITMSAVSAVLLVIIMSGRFIKYLAQAAQ-GVLDPGVLLLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+ + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQRRLLAYSLAPAALVAALVGWLSLGL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF---- 179
A G ++ Q + ++P + +++ +
Sbjct: 121 APQGIAEVDRILNQQDSLTEFDT--LVPGRFQTLRGGSRVTYTRELSADRSELGGVFISE 178
Query: 180 -TSITIDKKNKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
K + A+ + + L+ Y D + +
Sbjct: 179 TNVSRQTGKESGLSVLVAESGRQEIQPDGSRYLILENGYRYDGNPGQADYRAIQYDTYGV 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + S + + R + + N R T+ ++ + +PL++ +T++A
Sbjct: 239 LLPKPEVSMELSEREAMPTRELL-------GSDNLRHRTELHWRLSLPLLVFVVTVLAVP 291
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ R + + + I ++ ++ G L L +++ +L
Sbjct: 292 LAKVNPRQGR-FLKLLPAILLYMTYLALLIAVRGALDKGRLPMALGLWWVHGLFLAIGLL 350
Query: 354 ILL 356
+L
Sbjct: 351 MLF 353
>gi|218551558|ref|YP_002385350.1| hypothetical protein EFER_4343 [Escherichia fergusonii ATCC 35469]
gi|218359100|emb|CAQ91761.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia fergusonii ATCC 35469]
gi|324112114|gb|EGC06092.1| inner membrane protein yjgP [Escherichia fergusonii B253]
Length = 366
Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 57/354 (16%), Positives = 127/354 (35%), Gaps = 13/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ GI + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKGVLVKAAMILALFTGIVAAINVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSAVLFI----ESVDGSDFKDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
I K AD + +L+ + T L ++ FQ +
Sbjct: 177 IRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHN--YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + + +++ RA + + + + + M L+ +S+ R
Sbjct: 233 IIGHQAVALDPNDTDQMDMTTLWNTDSDRARAELNWRLTLIFTVFMMALMVVPLSVVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + I T +KS G G L P ++ ++L+I +
Sbjct: 293 QGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIAL 345
>gi|330720484|gb|EGG98783.1| putative permease [gamma proteobacterium IMCC2047]
Length = 343
Score = 80.3 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 44/322 (13%), Positives = 117/322 (36%), Gaps = 18/322 (5%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L R+P I+ ++P L+ ++VF + +E+ + A G+S+ +L
Sbjct: 17 GDIAADFLFYLIVFRLPDILLMVLPISLLLAILLVFGRMYIENEMAVFSASGVSLKKLAV 76
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
+ L+ + + +A G K +L + + + + + ++
Sbjct: 77 YAMASVSLVSLTVAALSFSLAPWGLKKVDELFVENANRTVFETVRAGRFSPMGED--NMS 134
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY------NDKVKLKKVVEYQYG 217
+ A+++ + + D K + A+ + + LK Y+
Sbjct: 135 LYAERLSDDQRVMSDVFIAREANGKKSNFQIMAEQGYLEVKPNSLAKYLILKNGYRYEGD 194
Query: 218 RIPIDKNSTTLNI-PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYF 276
D T IK+ + ++ ++R + + + A + +
Sbjct: 195 PGSRDYKVTQFETFGIKLSSPPEQVKENSTRGM--------ATGELLKLDSSTAIAELQW 246
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
I +PL++ + L+ +S R + ++ + F +++ MK+ + + P
Sbjct: 247 RISLPLLVPIIALLGVPLSRVNPRQGRFYFLI-PAMLFYFAYLVLLSGMKTAVEENTISP 305
Query: 337 VAAALIPVILTISLSILILLQK 358
++ + L++L+ L
Sbjct: 306 WLGLWWVHVMFLCLALLVFLNL 327
>gi|160885006|ref|ZP_02066009.1| hypothetical protein BACOVA_03003 [Bacteroides ovatus ATCC 8483]
gi|156109356|gb|EDO11101.1| hypothetical protein BACOVA_03003 [Bacteroides ovatus ATCC 8483]
Length = 632
Score = 80.3 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 34/240 (14%), Positives = 79/240 (32%), Gaps = 6/240 (2%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
+K+ L +G + I + + + EL + S A ++ +P
Sbjct: 11 IVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLVPVSLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ +++ F N EL+ +A GIS+ +++ P L + N + +
Sbjct: 71 AVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQA 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
LI K + + + +D + K + + D ++ +
Sbjct: 131 KLGTLILSMKQKSPELDIPEGVFY---SEIKDYNLKVAKKNRKTGMLYDVLIYSMKDGFE 187
Query: 190 IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
AD + K + G + + + ++ ++F E+ + F
Sbjct: 188 KARIIYADSGRLEMTADKQHLWLHLYSGDLFENLKAQSMKSENVPYRREEFREKHSIIEF 247
Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/98 (14%), Positives = 33/98 (33%), Gaps = 1/98 (1%)
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 356 KFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLVFI 414
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I + G + + L + +
Sbjct: 415 IYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGVFL 452
>gi|89075941|ref|ZP_01162316.1| putative permease [Photobacterium sp. SKA34]
gi|89048382|gb|EAR53960.1| putative permease [Photobacterium sp. SKA34]
Length = 366
Score = 80.3 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 49/358 (13%), Positives = 108/358 (30%), Gaps = 19/358 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L ++ I + + +P +
Sbjct: 2 IIVRYLTRETLKSQLAVLFVLFLVFISQKFISILADATD-GSIPSDLILTFMGLSIPSMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A G+ LL + +I+ G + +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGMGNKLLLQSALALAIITGSIAAVNAFWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A ++ L ++ K + P I I +
Sbjct: 121 APWSQEHIEQLKEETKAGPTLNMLVKGTF--QQAPNGSGVIFIDNITDKGSRLHKVFVAQ 178
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + + AD + +L + + + F +
Sbjct: 179 LKATDTLQPSVMVADNGTVK----ELSDGRQMLELNDGARYEGIPTQLNYSITHFNDYQA 234
Query: 243 QFASRSF------YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
R +E M+ ++ + +F + IPL+ +I +S
Sbjct: 235 LIGQREVKAGDRDWEAQPTMTLIKDKSLAAKAELQWRFSLVFCIPLL----VMIVVPLSA 290
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + +A + + I+ KS + GI+ V I T+ +++ +
Sbjct: 291 VNPRQGRFAK-LAPAVLIYLAYFLAISSAKSAIEDGIIPSVIGMWPINITTLLVALAL 347
>gi|260466946|ref|ZP_05813128.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
WSM2075]
gi|259029243|gb|EEW30537.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
WSM2075]
Length = 400
Score = 79.9 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 54/332 (16%), Positives = 119/332 (35%), Gaps = 27/332 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY + + L+ + +V+ + + + + S +A+ +P II
Sbjct: 3 VVERYIMRRAFVVFMAALVWTLAIVWTTQVLAKIDLVTD-SGQSALTFFEVASLILPSII 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++PF +V +N SEL + A G S W ++ P ++ ++ +F+ V N I
Sbjct: 62 PIVVPFALVVAVAQTLSVMNSDSELAVVNASGASRWTIVRPIMLLALAASVFSFAVDNGI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW------- 176
+ L+ + + + + +I + +F+ + LP+N +
Sbjct: 122 DPYARQKNRALVAESRSDLLSLIIQEGTFRKIEDG---LFLQIGERLPDNKLGGIFVADS 178
Query: 177 --EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI-PIK 233
E + K II R + ++ ND V +K + I + ++
Sbjct: 179 REEGVNLVYYAKTGSIIER-GGEKVLMMNDGVIHRKTLTGDLSVIRFTSYAFDMSAFMSA 237
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + + + S ++K+ + + + LIA +
Sbjct: 238 ANQVTLLPKDQTT----QYLLNPSANDKNYQQNPQEYRAEIDQRFSEWTYSMVFALIALA 293
Query: 294 V-----SLEFSRSNQPRIIVAYGIF---SGFM 317
V S +R N +A +F GF
Sbjct: 294 VAGDARSHREARVNPLITAIAISLFVRWLGFF 325
>gi|294807984|ref|ZP_06766761.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
gi|294444797|gb|EFG13487.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
Length = 638
Score = 79.9 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 34/240 (14%), Positives = 78/240 (32%), Gaps = 6/240 (2%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
+K+ L +G + I + + + EL + S A ++ +P
Sbjct: 17 IVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLVPVSLPL 76
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ +++ F N EL+ +A GIS+ +++ P L + N + +
Sbjct: 77 AVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQA 136
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
LI K + + + +D + K + + D ++ +
Sbjct: 137 KLGTLILSMKQKSPELDIPEGVFY---SEIKDYNLKVAKKNRKTGMLYDVLIYSMKDGFE 193
Query: 190 IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
AD + K + G + + + ++ ++F E+ F
Sbjct: 194 KARIIYADSGRLEMTADKQHLWLHLYSGDLFENLKAQSMKSENVPYRREEFREKHTIIEF 253
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 1/98 (1%)
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 362 KFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLVFI 420
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I + G + + L I +
Sbjct: 421 IYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGIFL 458
>gi|319407069|emb|CBI80706.1| putative permease, YjgP/YjgQ family [Bartonella sp. 1-1C]
Length = 382
Score = 79.9 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 54/367 (14%), Positives = 124/367 (33%), Gaps = 27/367 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y K LLGA+ + + + + N + + ++ +P +
Sbjct: 3 ILELYILKRIFILFSAVLLGAVGISWTVQILARINFLTTNGQ-TFLTIVYFSSLLIPSVT 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IIPF +V + +N+ SEL + A GIS + P ++ ++L + + N I
Sbjct: 62 SLIIPFALVVAITTILSTMNQDSELAVISASGISKNIVWKPILLLAVLASFTSFSITNFI 121
Query: 124 ATSGEKIGIDLIQQWKD--------NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
A ++ G Q+ +++I + IG ++ +
Sbjct: 122 APHARLNMRQILASSHSDLISLFIREGSFQELTKNLYIEIGERNANGTIG--RLFIADQR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN--IPIK 233
K I++ K I+ + +++ I ++ +L+ IP K
Sbjct: 180 DPQLGLFYYATKGAIVNNKKGKFLILNDGEIERIDYKNDNVSIIKFSSHTFSLSEFIPNK 239
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
++ S F + K + + + L + LI +
Sbjct: 240 KTPNIYPKDRPLSYLFNPNPNDSHYQRK-----PLQYRAELHRRFTECLYPIVFALIVIA 294
Query: 294 V-----SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
+ S +R + + + + + + + +P+ IP+ +++
Sbjct: 295 IAGDAHSYRQARISATFSTITFSLLI---YWLGYFFARKTENNPSYIPLLYI-IPIGISL 350
Query: 349 SLSILIL 355
+ ++L
Sbjct: 351 LIFFMLL 357
>gi|83594275|ref|YP_428027.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
gi|83577189|gb|ABC23740.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
Length = 396
Score = 79.9 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 47/325 (14%), Positives = 110/325 (33%), Gaps = 24/325 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + L + ++L+++I+ + + S++ L +P +
Sbjct: 5 TLHRYILRNLLVGLAVGSVALIVLIWLINSLKFLDWFVNK-GLSVATFLRLTLLLMPGFL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IP V + + L EL++ RA G+ WQL P + +L + +
Sbjct: 64 TVFIPIALFAVVLFTYNRLAADRELIVMRAAGMGPWQLARPALALCAVLTGVGYWLTLSV 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI----WEDF 179
+ E + + + + Q+ + + + A + + + D
Sbjct: 124 VPAMEGAFEAIKYEVRGEVSSLVIKEGQFNQMKDG---LIVYAGERAKDGRLIDLMIHDT 180
Query: 180 TSITID-----KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
T T D + ++ + ++ N + + + +S +++ K
Sbjct: 181 TGKTSDLTVMAESGALVREGEGARILLINGNRQERN--RQTGKVNFLYFDSYAVDLGGKA 238
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIF-------HNYRAETQFYFLIVIPLMLVAM 287
+ + R E+I + + H R + + ++ PL +
Sbjct: 239 ASTEMRFREERERPLSELISLKAGDRIDPDYPFTYEERHIRRMRMEAHLRLLRPLAHIGF 298
Query: 288 TLI--AASVSLEFSRSNQPRIIVAY 310
LI AA ++ EF R + ++
Sbjct: 299 LLIGLAAVLTGEFDRRGGNKRVILA 323
>gi|313674336|ref|YP_004052332.1| permease yjgp/yjgq family protein [Marivirga tractuosa DSM 4126]
gi|312941034|gb|ADR20224.1| permease YjgP/YjgQ family protein [Marivirga tractuosa DSM 4126]
Length = 549
Score = 79.9 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 60/196 (30%), Gaps = 8/196 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R F +L T + + + ++ + + S A L A +
Sbjct: 10 RSFIGPFLITFFVVVFILLTQYMLKYFDDFVGK-----DLGFSVFAELIAYFSINMTPIA 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
P L+ +++ F NL EL ++ GIS+ ++L P V + L N I
Sbjct: 65 FPLAVLLSSLMTFGNLGEHFELTAIKSAGISLVRVLRPLFVFVVCLSAVVYYSNNFIVPK 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
L+ K + I A K ++ D
Sbjct: 125 ANLEAYSLLYDIKQKKPSIDIKEGAFY--GGIPGYS-IKANKKYDDDKSLGDLIIYNHSD 181
Query: 187 KNKIIHRKDADLAIIY 202
+ AD A++Y
Sbjct: 182 RKGNTEIILADSALMY 197
Score = 56.0 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 1/86 (1%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ + + + M LI A + + V I + Y I T G
Sbjct: 435 YSIEANSKLSQAVACIVMFLIGAPLGA-IIKKGGLGFPVIVSILFFIVSYVINTTGIKLG 493
Query: 330 KSGILLPVAAALIPVILTISLSILIL 355
++G + A + + + L
Sbjct: 494 RAGDISNFWAVWASNFVLLPFGLFFL 519
>gi|330883204|gb|EGH17353.1| hypothetical protein Pgy4_30756 [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 139
Score = 79.9 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 5/139 (3%)
Query: 219 IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
P+++ L+ P + E + + ++ SN R F+ +
Sbjct: 4 TPVERWDVALS-PQLLSTVIMPPESLSISGLWNYAHYLADQGLSNG----RYWLAFWTKV 58
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+ P + VA+ L+A S RS V G+ GF I ++ P+
Sbjct: 59 LQPAVTVALVLMAISFIFGPLRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLL 118
Query: 339 AALIPVILTISLSILILLQ 357
A L+P + +L +
Sbjct: 119 AVLMPAAACALAGVYLLRR 137
>gi|294678216|ref|YP_003578831.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
gi|294477036|gb|ADE86424.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
Length = 376
Score = 79.9 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 48/359 (13%), Positives = 115/359 (32%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + +F L + + +V + +++ + A +P +I
Sbjct: 4 LDRYLLSQLMAIFGFFALVLVSVYWVNRAVLLFDKLIG-DGQTAWVVLEFTALTLPKVIS 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P + L+ SELV+ ++ G S W+L P V +++ + +++ +
Sbjct: 63 LVLPVAAFAAVLYAINRLSGESELVVMQSAGASPWRLARPVAVFGLIVAALMLALVHELV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + Q + + + P I + ++I + +
Sbjct: 123 PASRARLAERQAQVSQDVTARFLTEGSF---QTPTAGITVYIREISDLGELLD---IFLY 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D + + + K+V + + + +L + D
Sbjct: 177 DARGQRAETIYTAEKALIVPSEAGPKLVMFDGTAQTLRPSDGSLALTRFSDFTYDLGGAI 236
Query: 245 AS----------RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ ++I + A + + PLM LIAA+
Sbjct: 237 GTGLRGRIDWEEVPSRDLIAPGPELLAATGSTVAAAHLELNDRLAQPLMAPVAALIAAAA 296
Query: 295 SL--EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL--IPVILTIS 349
+ FSR + + + L ++ + S ++ P AL +P + ++
Sbjct: 297 MMLGGFSRLG-LWRQIGLAVLALIGLQSLSNVATSMTRAD---PALWALHYMPALAGLA 351
>gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62]
gi|254547819|gb|ACT56866.2| permease protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 361
Score = 79.9 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 62/365 (16%), Positives = 129/365 (35%), Gaps = 35/365 (9%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + ++ L L + + +VI + + N + S++ ++ +P ++ +
Sbjct: 7 YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTVLPMVT 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF + V ++NR +EL+I G S L+ P + +ILL IF + N I
Sbjct: 66 PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
L + + + + ++ D++I K P N + +D +
Sbjct: 126 RSTIKQLSAKAQLALTFSYLEENLFFRL---DDDLYIKISKYNPNNT-LQGI--FIVDSR 179
Query: 188 NKIIHRKDADLA---IIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPIKMDGFQK 239
+ H+ + + + L ++ I D S TL
Sbjct: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ SF + + + + YR+E F+ + L V LI+ + + +
Sbjct: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSE--FHKRLTQWLFPVIFGLISIVAADKRA 297
Query: 300 RSNQ--------PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
Q + +++G+F GF Y I I + + + + +S
Sbjct: 298 LVRQRKKIHPIFISLSISFGVFWGFS-YIIHKIEQ---NPYYIPILY------LFLFCIS 347
Query: 352 ILILL 356
+ LL
Sbjct: 348 SIFLL 352
>gi|254501938|ref|ZP_05114089.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
gi|222438009|gb|EEE44688.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
Length = 395
Score = 79.9 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 43/342 (12%), Positives = 113/342 (33%), Gaps = 22/342 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY + L +V+ + + +I + + +P +
Sbjct: 2 NTLERYIIRRTAYAFTLTLAAMTGVVWATQALRQLDLVTSKGQ-TIVQFIGITMLALPFL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I + PF ++ I+V +L+ SEL++ A G S + +L P + + ++ + +
Sbjct: 61 IVTVAPFALMIALILVLNSLSGDSELIVIDASGGSRFLVLKPVLAFATIIMLLVSALSLY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A +G I + + + + N ++ + + + +
Sbjct: 121 VAPAGLAQLRTEITRVRADLVANIVKPG---RFINVEEGLTFHIRNRSGKGTLDGLLMHD 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKL---KKVVEYQYGRIP----IDKNSTTLNIPIKMD 235
T D ++ + + + L ++ + ++ + S ++ +
Sbjct: 178 TRDPDTAFTYQAETGNIVEAAGRTLLVMQNGTIQRRPKQVGDMSIVRFQSYAFDLSNLIP 237
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + + RS ++ + + H R + + +PL ++ LI +
Sbjct: 238 EASEPVFKPSERSTANLLGPPGNDYFA-VTHPERLRAEIHERFSLPLYCLSFALIVFAF- 295
Query: 296 LEFSR--SNQPRIIVAYGI-------FSGFMLYTIITIMKSF 328
L +R + + I +GF + I
Sbjct: 296 LGVARTTRQGRGMAIVGAITCCVLLRTTGFGITAISNDSAVL 337
>gi|152987845|ref|YP_001346668.1| hypothetical protein PSPA7_1283 [Pseudomonas aeruginosa PA7]
gi|150963003|gb|ABR85028.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
Length = 372
Score = 79.9 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 45/307 (14%), Positives = 103/307 (33%), Gaps = 15/307 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ A R+P +
Sbjct: 2 IVFRYLSREVLVTMSAVSAVLLVIIMSGRFIKYLAQAAQ-GLLDPGSLFLIMAFRIPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + ++L+ I + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQKRLLGYTMAPALLVAILVAWLSLFL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A G L+ + + ++P + +++ +
Sbjct: 121 APQGINQFALLLNKQDTLTEFDT--LVPGRFQAMRDGTRVTYTEELSKDRGELAGIFISQ 178
Query: 184 ID----KKNKIIHRKDADLAIIY---NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
D + + I A+ + L Y+Y P N +
Sbjct: 179 KDLNSSNQERGISILVAEKGTQNIQADGSRYLILHNGYRYDGNPGQANYRAIKYD-TYGV 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E + S + + + N R + + + + PL++ +TL+A +S
Sbjct: 238 MLPKPEASSEVSERDAVPTVDLFGS----DNPRYQAELQWRLSTPLLVFVVTLLAVPLSR 293
Query: 297 EFSRSNQ 303
R +
Sbjct: 294 VNPRQGR 300
>gi|288940756|ref|YP_003442996.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
gi|288896128|gb|ADC61964.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
Length = 380
Score = 79.9 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 46/357 (12%), Positives = 118/357 (33%), Gaps = 31/357 (8%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
+ +L L +L L+F+ L E+ L + + ++ I ++P
Sbjct: 20 AQVFLAIVLVLVLILASLMFLRTLEEV-----NLGGLGVDVVFRYLSLQIQRDISSLLPP 74
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
+ +V R SEL+ +A G+ +L F++ ++ + T V +
Sbjct: 75 AFFLAILVTLARFARDSELIAMQACGVGPPRLYRTFLLLAVPVAFVTGWVALDLKPHAAA 134
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
+ Q K+ Q + + Q + + +I ++ + D +D++ +
Sbjct: 135 GIQQIRLQQKEQA-AQIAGLQAGRFYVEEQGKVVVYIGEID-QHKLLGDV--FVLDRRGE 190
Query: 190 IIHRKDADLAII------YNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQKFSE 242
+D + V L + + I++
Sbjct: 191 KTRLVVSDSGRHRIEESTGDHLVTLTQGHRFDGQAGSGAYLIGDFERYEIRLADAGSAPH 250
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
F R+ M ++ + + PL ++ + ++A + R
Sbjct: 251 AFNKRATIPTPDLMHSDELAD-------RVELEHRLAAPLSILTLAVLAIPLVDPSPRQR 303
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI---LTISLSILILL 356
++ + + F + + + +S+ +G+ A + + L I + + ++L
Sbjct: 304 TTGRMLL-ALLAYFSFFNLQRLAESWMAAGVTP----AWLGSLWYQLAILVFVHLML 355
>gi|237712765|ref|ZP_04543246.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262409745|ref|ZP_06086283.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|229447177|gb|EEO52968.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262352398|gb|EEZ01500.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|295084616|emb|CBK66139.1| Predicted permeases [Bacteroides xylanisolvens XB1A]
Length = 632
Score = 79.9 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 34/240 (14%), Positives = 78/240 (32%), Gaps = 6/240 (2%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
+K+ L +G + I + + + EL + S A ++ +P
Sbjct: 11 IVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLVPVSLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ +++ F N EL+ +A GIS+ +++ P L + N + +
Sbjct: 71 AVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQA 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
LI K + + + +D + K + + D ++ +
Sbjct: 131 KLGTLILSMKQKSPELDIPEGVFY---SEIKDYNLKVAKKNRKTGMLYDVLIYSMKDGFE 187
Query: 190 IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
AD + K + G + + + ++ ++F E+ F
Sbjct: 188 KARIIYADSGRLEMTADKQHLWLHLYSGDLFENLKAQSMKSENVPYRREEFREKHTIIEF 247
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 1/98 (1%)
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 356 KFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLVFI 414
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I + G + + L I +
Sbjct: 415 IYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGIFL 452
>gi|218264803|ref|ZP_03478497.1| hypothetical protein PRABACTJOHN_04207 [Parabacteroides johnsonii
DSM 18315]
gi|218221776|gb|EEC94426.1| hypothetical protein PRABACTJOHN_04207 [Parabacteroides johnsonii
DSM 18315]
Length = 655
Score = 79.9 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/204 (14%), Positives = 65/204 (31%), Gaps = 8/204 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSIS--RGAVLAAT 57
M I Y F L+T L L + I L + + ++ + A +
Sbjct: 1 MLKIKRLYTF--MLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGKGLGIPVLAEMFMY 58
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++ +P L+ +++ F NL EL+ ++ G+S+ ++ P ++ ++ I
Sbjct: 59 AALFLVPMALPLAILLASLMTFGNLGERLELLAMKSAGVSLVHIMRPLIITISMISIGAF 118
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
N + L+ + + + + K E +
Sbjct: 119 FFQNYAMPVVQVKLYTLLWSMRQKSPELDIPEGVFYSEITG---FNVYVKHKDTETGLLR 175
Query: 178 DFTSITIDKKNKIIHRKDADLAII 201
D + + AD +
Sbjct: 176 DMMIYDYSEGFNKVSVMVADSGRL 199
Score = 49.5 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 1/87 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R T+++ + + I A + R + V + Y I I
Sbjct: 390 RRHLTEWHKKFTLSFACMVFFFIGAPLGA-IIRKGGLGMPVVISVILFIFYYIIDNIGFK 448
Query: 328 FGKSGILLPVAAALIPVILTISLSILI 354
+ G+ + + L I +
Sbjct: 449 MARDGVWEAWQGMWLSSAILAPLGIFL 475
>gi|220916596|ref|YP_002491900.1| permease YjgP/YjgQ family protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219954450|gb|ACL64834.1| permease YjgP/YjgQ family protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 371
Score = 79.9 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 42/363 (11%), Positives = 121/363 (33%), Gaps = 13/363 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G++ RY + L LL ++ + + + S+ ++ + +P +
Sbjct: 2 GLIDRYLAREILLPFAAALLFLTQILLATQILGQADVLFG-SGVSLVDVGLVMLSLMPHL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +IP L+ ++ L E+V A G+S +L+ ++ +++ +
Sbjct: 61 LGYVIPVAFLLGVVLGVGRLAEDREVVALGAAGLSPVRLVRVPLLLGLVVAALGAWLSLS 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK-----KILPENHIWE 177
+ + + + + + A+ +L ++
Sbjct: 121 VEPASIRAARLRLNEVVKRNVTNDVRGGTFYDQIPGYTIYAERARGGRWENVLIQDRSNP 180
Query: 178 DFTSITIDKKNKIIHRKDADLA---IIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
D + + + ++ A ++ +V ++V Y K + + +
Sbjct: 181 DAPMLALSHRGRL-EPVGAGQDMRLVLEQGEVHREEVGTADYASAAFGKAEILVGLGTAL 239
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSN-IFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
++ + ++ + + + + + R E + + PL++VA L+
Sbjct: 240 SDRNVLAKSSREATVSDLRARAAAAREKGDVVEARRQEGYLHRKLSAPLVVVAFALLGVP 299
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
L R + + Y ++ + + G L A +P ++ + I
Sbjct: 300 --LGAERRGGRAFGMGATFLLVVVHYLLLRGGEVLTQLGHLPAAFALQLPNLVLGAAGIG 357
Query: 354 ILL 356
++L
Sbjct: 358 LVL 360
>gi|325279047|ref|YP_004251589.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
20712]
gi|324310856|gb|ADY31409.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
20712]
Length = 487
Score = 79.9 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/199 (16%), Positives = 73/199 (36%), Gaps = 8/199 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYS--ISRGAVLAATRVPLI 62
L + K ++ + I +FV+ + + + E+ + A L +
Sbjct: 4 LHIFMLKSFIGPFVATF---FISMFVLIMQFLWRMIDEIVGKGLEFTVIAELLIYVATTL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P L+ +I+ F +L EL+ ++ GIS+++++ P ++ I L +F + N
Sbjct: 61 VPMALPLAVLLSSIMTFGSLGENYELIALKSAGISLYRIMKPLIILIICLTVFAFVFSNN 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I L+ + + + +N + I KI E + +
Sbjct: 121 ILPVANLKFYSLLYDIRKQKPEMSFKEGIF---TNDLEGYSIKIDKINKETGMMYNMLIY 177
Query: 183 TIDKKNKIIHRKDADLAII 201
+ AD ++
Sbjct: 178 EHKDGSGNYDVTKADSGMM 196
Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
+++ +++ + I A + R + V + + Y I + +
Sbjct: 368 KSQLEWHRKFTLSFACFIFFFIGAPLGA-IIRKGGLGMPVVVSVLLFIIYYIISMMGERS 426
Query: 329 GKSGILLPVAAALIPVILTISLSILILL 356
+ ++ P A I I L + I+L
Sbjct: 427 AREAVISPAAGMWI--SAFILLPLGIIL 452
>gi|317051998|ref|YP_004113114.1| permease YjgP/YjgQ family protein [Desulfurispirillum indicum S5]
gi|316947082|gb|ADU66558.1| permease YjgP/YjgQ family protein [Desulfurispirillum indicum S5]
Length = 342
Score = 79.9 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 39/357 (10%), Positives = 118/357 (33%), Gaps = 21/357 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M RY + L +++ L + + E S+ A L +P
Sbjct: 1 MLSTWQRYLLRECFFYFFAALASLSLIMASNSLIRMGSSTLEK-GISLMSLAQLTLLSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
IP L+ + + LNR++E+VI + GIS + ++ + S ++ +
Sbjct: 60 STAFITIPVSALIAAMALSSALNRSNEMVILYSAGISPFGIMKVILFASTVITGIAIANS 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A K + +N + + ++ + + ++ + + +
Sbjct: 120 FVLAPLASKQIQHVYADMAENVSYRVILPGVFNKLGDTTLFYYHLGREGFHDVMVAQGDL 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
++ + ++ ++ + ++ + +V+ + G+ + + +D +
Sbjct: 180 VLS-ARSGSLVQGDESMVLLLRDGT-----IVDARQGQSFTRFAVHEIPLETAVDSLRLS 233
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ ++ +A + + + + + ++ + R
Sbjct: 234 YSMMSVEQLRQL-------------KGSKAILEIHKRYALSVSTLLFGVLGFMLGARGGR 280
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
S + V + Y I I +G++ P I + ++++ + +
Sbjct: 281 SGK-GASVLTSLMVVLAFYLIRAIGVHSMDAGLIAPQQVEWIGPGVMAAVTVFVYFR 336
>gi|260910242|ref|ZP_05916919.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
gi|260635746|gb|EEX53759.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
Length = 630
Score = 79.9 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 8/193 (4%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
F +L T L M + F+ + G +A VP Q +P
Sbjct: 15 FGMLFLGTFFICLFVLM-MQFLWRYVDELVGKGLTMEVLAQFFWWMALMMVP----QALP 69
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L+ +++ F NL+ +SEL ++ GIS+ + + VV L+ + + + N I
Sbjct: 70 LAILLSSLITFGNLSESSELTAIKSAGISLTRTFSSLVVVCSLISVTSFVFQNNIGPYST 129
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
L+ K + + + + I +K + + +
Sbjct: 130 IKLSQLLISMKQKSPELGIPEGVFY---DGIPNSNIYVQKKDNQTGKFYGIMIYRMSNSY 186
Query: 189 KIIHRKDADLAII 201
+ AD ++
Sbjct: 187 EDSEIILADSGML 199
Score = 39.5 bits (91), Expect = 0.89, Method: Composition-based stats.
Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 1/87 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ + + Y ++ L + I A + R I V + + Y +
Sbjct: 367 RQHKIEMYKKFLVSLSCLIFFFIGAPLGT-IIRKGGLGIPVIVSVLVFIVYYILDNTGYQ 425
Query: 328 FGKSGILLPVAAALIPVILTISLSILI 354
+ GI L+ ++ L++ +
Sbjct: 426 MARRGIWDVWFGELLATMVLTPLAVFV 452
>gi|330448737|ref|ZP_08312384.1| putative transmembrane possibly involved in transport conserved
inner membrane protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492928|dbj|GAA06881.1| putative transmembrane possibly involved in transport conserved
inner membrane protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 366
Score = 79.5 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 50/357 (14%), Positives = 118/357 (33%), Gaps = 17/357 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L ++ I + + L +P +
Sbjct: 2 IIVRYLTRETLKSQIAVLFVLFLVFISQKFIRILADASD-GSIPSDLIMTLMGLSIPSMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A G+ LL + +I+ G + +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGMGNKLLLQSALALAIITGSIAAVNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + ++++ K + P + I +
Sbjct: 121 APWSQDHVEQVMEKAKAGPGLNMLVKGTF--QQTPDGKGVVFVDDITEKGSKLSKVFIAQ 178
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ + AD +I ++L Y+ ++ + T N + G
Sbjct: 179 LKATETLQPSVMVADRGLITEQPDGRQMLELNDGTRYEGIPTQLNYSITHFNNYQALIGQ 238
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + +E + + +SN+ + +F ++ IPL+ +I +S
Sbjct: 239 REVKQGNRD---WEALPTLDLMKESNLAAKAELQWRFSLILCIPLL----VMIVVPLSAV 291
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + +A + + I+ KS + GI+ I T+ +++ +
Sbjct: 292 NPRQGRFAK-LAPAVLIYLAYFLAISSAKSAIEDGIIPSGIGMWPINIATLLVALGL 347
>gi|183221200|ref|YP_001839196.1| putative permease [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
gi|189911291|ref|YP_001962846.1| permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
gi|167775967|gb|ABZ94268.1| Permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
gi|167779622|gb|ABZ97920.1| Putative permease; putative membrane protein [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 530
Score = 79.5 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 74/460 (16%), Positives = 130/460 (28%), Gaps = 103/460 (22%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P IL Y K L L L ++++ + + R
Sbjct: 37 PSILRIYILKEILSPFL-VALSFFTMIYMAVAIQKMIGLFVGKGVDFFRLLDYMGYVFGN 95
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI- 120
+ IP L+ I+ L+ SE+ RA G+S + + F+V L+ + +
Sbjct: 96 TLPMTIPMACLMSGIMAAGRLSGDSEITAMRASGVSFPYIYSNFLVFGFLMTLIVGYLNF 155
Query: 121 --------------NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ-----D 161
N IAT + I Q D S+ M + +
Sbjct: 156 YLGPENTRKMKDFDNWIATYNPLLAIQPGQFSGDKTQDFFSEKGRTMYSGGVDEEGNLSN 215
Query: 162 IFIGAKKILPENHIWEDFTSITIDKKN-KIIHRKDADLAII---------YNDKVKLKK- 210
+ I I + ++ + K++ +A ++ Y V+LKK
Sbjct: 216 VQIREWAISAAGTDFIMVNNLAVPMGGSKMLQVINAKEGLLVEKKNAAGEYEKSVRLKKG 275
Query: 211 -VVEYQYG----------------RIPIDKNSTTLNIPIKMDGFQ-----KFSEQFASRS 248
V+E+ P K S TL+I +K D F + S
Sbjct: 276 YVIEWDPETNAIGITNFMNGEMDYNTPAKKESKTLSINVKPDTFSLPMLIEIRNAIESEG 335
Query: 249 F------------------------------YEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
YEII + N+ + + TQ L+
Sbjct: 336 LEKIPGLEILKEYGLSIKGVGGLKQMVEQFKYEIIMGANSGNQEEMAQKFALFTQLSELL 395
Query: 279 ------------------VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
PL ++ + L RS + + + + YT
Sbjct: 396 NESKKTLTGFNVEIHKRFATPLSCQIFFFLSFPLGLVVKRSGK-GMSFTLAVVFLLIYYT 454
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ I+ +LSI I++ + D
Sbjct: 455 FFIFGSGISYKENVPDWVGPWSANIVIATLSIYIMISRTD 494
>gi|296116656|ref|ZP_06835266.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
23769]
gi|295976868|gb|EFG83636.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
23769]
Length = 386
Score = 79.5 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 41/310 (13%), Positives = 106/310 (34%), Gaps = 16/310 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + L + +L+++ + + S+ L + +P +
Sbjct: 17 ILDRYVLRQLLLALVATTGALALLIWLTQSLHFVSLVVGR-GLSLRVFVQLTSLLIPSFV 75
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P T VV ++ L EL + +A G+S + + P ++ +++ + + +
Sbjct: 76 AVILPITTFVVVQFIYQRLGSDRELTVMQAAGLSPFMMARPALLCALVSVLACYALNLWV 135
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK-------KILPENHIW 176
+ Q ++ + ++I A+ I+ E+
Sbjct: 136 VPTAYHGFRQYEYQIRNKMAAFLIQDGV-FTQVSDNMTVYIRARDPSGMLHGIMVEDDRQ 194
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
D + + ++ + D +++N + + + ++N+ L+ P
Sbjct: 195 PDAQATILAEEGSFVITNDQPRIVLFNGSRQEIDRKTGRLNMLSFERNTIDLSAPHGTQT 254
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA--ASV 294
Q + + + FS + + + + + PL + +I +++
Sbjct: 255 RQPDANELPITALL-HPNLRQFSPR----DEKKMIIEAWRRLTSPLCAFSFAMIGLLSAL 309
Query: 295 SLEFSRSNQP 304
FSR
Sbjct: 310 GGGFSRHGNI 319
>gi|294674577|ref|YP_003575193.1| hypothetical protein PRU_1912 [Prevotella ruminicola 23]
gi|294473775|gb|ADE83164.1| putative membrane protein [Prevotella ruminicola 23]
Length = 662
Score = 79.5 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 66/224 (29%), Gaps = 25/224 (11%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLG---AMILVFVIDLNEIQNQMGELPNYSISRGAVLA 55
M I L + K + + +++ F+ + G +
Sbjct: 1 MFRIKKLDIFIAKQFGLLFVGTFFICQFVLMMQFLWRYVDELIGKGLSLEVMAQFFWYMG 60
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
+P Q P L+ +++ F NL +SEL +A GIS+ Q ++ S+L+
Sbjct: 61 LMLMP----QAFPLAILLSSLIAFGNLGESSELTAIKAAGISLMQAFRSLIIISVLMAGI 116
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+ N + + L+ K + + P + I +K +
Sbjct: 117 SFYFQNVVGPRANQDFYRLLLGMKQKSPELEIPEGV-FYDGIPGSN--IYVQKKDLNTGM 173
Query: 176 WEDFTSITIDKKNKIIHRKDADLA-------------IIYNDKV 206
+ + AD +YN
Sbjct: 174 LYGIMIYRMTGSYEDQAIILADSGMMQSTAEKKHLLLTLYNGVW 217
>gi|297624271|ref|YP_003705705.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
gi|297165451|gb|ADI15162.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
Length = 359
Score = 79.5 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 52/349 (14%), Positives = 111/349 (31%), Gaps = 14/349 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP-NYSISRGAVLAATRV 59
M Y + L L +IL+ L + + A +
Sbjct: 1 MTRRFSLYLVREILPLYAAGLTALLILLLGAFLLLEGVLADAVARGVGPALVARFLLYSI 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P +P L ++ L++ SE+ +G+S Q L P ++ +L+ + +
Sbjct: 61 PSAAAMGLPLALLFAALLGITRLSQDSEIKAGLLLGLSPRQFLTPILLLGLLVSTVSFIN 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+A + + ++ + + + + + + I P + D
Sbjct: 121 NELLAPWSYRRAQEALKDILVQSPETLIEAGSFFTDALGRS---VYLGSIAPGG-VVRDV 176
Query: 180 TSITIDKKNKIIHRKDADLAIIYN--DKVKLKKVV--EYQYGRIPIDKNSTTLNIPIK-M 234
T I A+ ++ +L + Y+ GR+ +D + +P++ +
Sbjct: 177 TVIQPGGTAGPSEVIRAESGVLDEAAGVWRLNGIRMLRYRDGRVVLDAPADEALLPVRGL 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ E+ ++ +N T + P A L A S+
Sbjct: 237 SASSSTPPELTRLPLRELFARLRG---TNPQDAPAEWTALHRKFAEPSAAFAFALFALSI 293
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
L R N + + +F F+ Y ++ G G L A +P
Sbjct: 294 GLYSFRRN-FGLGLVSVLFLTFIYYATWSVSNLLGAQGTLPAAVAGWLP 341
>gi|118590094|ref|ZP_01547497.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
gi|118437066|gb|EAV43704.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
Length = 395
Score = 79.5 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 54/358 (15%), Positives = 126/358 (35%), Gaps = 25/358 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY + + + +V+ + + +I + + +P +
Sbjct: 2 KTIERYIIRRTVYAFTLTIAAMTGVVWATQALRQLDLVTSKGQ-TIVQFIGITMLALPFL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I + PF ++ I+V +L+ SEL++ A G S + +L P ++ S+++ + T +
Sbjct: 61 IVIVAPFALMIALILVLNSLSGDSELIVIDASGGSRFLVLKPVMLFSLVVMLLTASMSLY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI-GAKKILPENHIWEDF-- 179
+A +G I + + + ++ + + + K + + D
Sbjct: 121 VAPAGLAQLRTEITRVRADLVANIVKPGRFITVEDGLTFHIRNRSGKGTLDGLLMHDTRD 180
Query: 180 --TSITIDKK-NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN--IPIKM 234
T+ T +I+ D L ++ N ++ + + + + L+ IP
Sbjct: 181 PETAFTYQADTGQIVEAADRTLLVMQNGTIQRRPKQQGDISIVRFQSYAFDLSNLIPEAG 240
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ K SE+ ++ + + ++ K + + + + PL +A LI +
Sbjct: 241 EPVYKASER-STLNLMSPGRHDEYALK----NPDKLVQELHERFSQPLYCLAFGLIVFAF 295
Query: 295 SLEFSR--SNQPRIIVAYGIFS-------GFMLYTIITIMKS-FGKSGILLPVAAALI 342
L +R V I S GF + I ++ A L
Sbjct: 296 -LGKARTTRQGRGFAVLGAICSCVLLRTTGFGVTAISGTSTVLLSLLYVVPITGAVLA 352
>gi|282860179|ref|ZP_06269254.1| putative membrane protein [Prevotella bivia JCVIHMP010]
gi|282587068|gb|EFB92298.1| putative membrane protein [Prevotella bivia JCVIHMP010]
Length = 633
Score = 79.5 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/202 (15%), Positives = 74/202 (36%), Gaps = 8/202 (3%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISR--GAVLAATRV 59
L + K + + F I +FV+ + + + +L ++ A
Sbjct: 4 FKKLDIFIAKQFG---MLFTGTFFISLFVLMMQFLWRSIDDLIGKGLTVDVLAQFFGYMA 60
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
+++ Q +P L+ +++ + NL +SEL ++ GIS++Q + +IL+ I +
Sbjct: 61 LMLVPQALPLAVLLSSLMTYGNLGESSELTAIKSAGISLFQSFRGLIATTILITILSFYF 120
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
N +A +K L+ K + + + + + +K +
Sbjct: 121 QNNVAPIAQKHIYQLLISMKQKSPELEIPEGVFY---DGIPQTNLYVEKKDLNTGHLYNI 177
Query: 180 TSITIDKKNKIIHRKDADLAII 201
+ + AD ++
Sbjct: 178 MVYRMTDSYEDQAIILADSGML 199
>gi|255533443|ref|YP_003093815.1| permease YjgP/YjgQ family protein [Pedobacter heparinus DSM 2366]
gi|255346427|gb|ACU05753.1| permease YjgP/YjgQ family protein [Pedobacter heparinus DSM 2366]
Length = 480
Score = 79.5 bits (195), Expect = 7e-13, Method: Composition-based stats.
Identities = 38/243 (15%), Positives = 81/243 (33%), Gaps = 10/243 (4%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
F + + T + ++L ++++ + + L + +P
Sbjct: 12 FIRPFFVTFFIVMFILLMLFLFKYVDDLIGK-----GFEWYVILELMYYASAANVSMALP 66
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L+ +I+ F L ELV ++ G+S+ + + P +V I L I + L +
Sbjct: 67 LSILLSSIMTFGTLGENYELVAIKSAGVSLQKAMMPLLVLIIFLAISSFLFSEYMLPKAN 126
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
L+ ++ K+ S +I +N I K + + N
Sbjct: 127 LKFGSLLWDIRN---KKLSFLIKEGVFNNSIPGYSIRVDKKGSDGISLHNVMIYDHTSNN 183
Query: 189 KIIHRKDADLAII--YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
I A + +D + L +Y +S + F++ ++F
Sbjct: 184 GIAKIIIAKSGKMSKNDDYLLLTLHDGVRYEESNGKSSSYNPRQELTRMRFKETDQKFDI 243
Query: 247 RSF 249
SF
Sbjct: 244 SSF 246
Score = 41.0 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 3/128 (2%)
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
T+ ++ Q +Q S + +++ + + + E +F + +
Sbjct: 320 TIPKAQRLTVLQNALDQANSILQTTSGRLQDHADR--VRNIIKVEIEFQKKFTLAASCLL 377
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
+ I A + R + V I + I T+ + G L P + I+
Sbjct: 378 LFFIGAPLGA-IIRKGGLGLPVVMAIVFFLFYHIIATVSEKSATQGSLTPFFGMWLAFII 436
Query: 347 TISLSILI 354
L +
Sbjct: 437 LSPLGAFL 444
>gi|307946743|ref|ZP_07662078.1| permease YjgP/YjgQ family protein [Roseibium sp. TrichSKD4]
gi|307770407|gb|EFO29633.1| permease YjgP/YjgQ family protein [Roseibium sp. TrichSKD4]
Length = 395
Score = 79.5 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 54/357 (15%), Positives = 116/357 (32%), Gaps = 27/357 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY FK + + +V+ + + +I + + +P +
Sbjct: 2 KTLERYIFKRAIGVFFMAMAAMAGVVWSTQALRQLDLVTSKGQ-TIVQFIGITMLALPFL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + PF ++ ++V L+ SEL++ A G S + +L P ++ + + T +
Sbjct: 61 LVIVAPFALMIALVLVLNALSGDSELIVIDATGGSRFLVLKPVLIFTAAVTALTATLSIY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP--ENHIWEDF- 179
+A G + I + + + ++ + + I + + + D
Sbjct: 121 VAPLGLGELREEITRVRADLVANIVKPGHFINM-DAGLTFHIRNRSGNGTLDGLLLHDVR 179
Query: 180 ---TSITIDKK-NKIIHRKDADLAIIYNDKVKL--KKVVEYQYGRIPIDKNSTTLNIPIK 233
T+ T I+ D L ++ N ++ K E R + IP
Sbjct: 180 DKDTAFTYQSDTGHIVEVADRTLLVMQNGTIQRKPKGAGEISIVRFQSYAFDLSNLIPEA 239
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ K SE+ + + H + + + PL +A L+ +
Sbjct: 240 SEPVYKASERSTMNLLNPPPN-----DAYALQHPDKLLAELHERFSQPLYCLAFALVVFA 294
Query: 294 VSLEFSR--SNQPRIIVAYGI-------FSGFMLYTI-ITIMKSFGKSGILLPVAAA 340
L +R I + I +GF + I ++ A A
Sbjct: 295 F-LGKARTTRQGRGIAILGAITTCILLRTAGFGVTAIASGFTGLLLLLYVVPIAAMA 350
>gi|325295268|ref|YP_004281782.1| permease YjgP/YjgQ family protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065716|gb|ADY73723.1| permease YjgP/YjgQ family protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 361
Score = 79.5 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 61/358 (17%), Positives = 130/358 (36%), Gaps = 21/358 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY F L+ + L G I V ++D + SI + +P
Sbjct: 3 IKIIHRYIFLEILRVFILTL-GLFIFVILMDRASSIAETVFGQGVSILNFLSVLVKGIPA 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV---L 118
+ IP ++ ++VF L +ELV ++ G+S +L P + + I + +
Sbjct: 62 FLGMTIPMAFILSVLIVFIQLGNNNELVALKSCGVSTKELSKPVIFLGVAFSILSFYSLM 121
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ P + K I+ + + K + SN F +K+ PE E+
Sbjct: 122 FLMPKSNVAMKKEIEELVKKKITMSISPKNFS-----SNFPGVTF-YVEKLYPEKGYLEN 175
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
F + K I A ++ + K V + + K+ F+
Sbjct: 176 FMVSLVKKDELIT--IFAKKGMLRTE----KDTVFLDIQDGTGEFINWKKPENFKVLNFK 229
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE--TQFYFLIVIPLMLVAMTLIAASVSL 296
++ + + E + + + + + R E + + + + L + + ++A S++L
Sbjct: 230 NYTVKLYRFTKREKFESIRYKTLPELISSNRIEAKVELFKRLGLSLAPLIVGILAFSLAL 289
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
RS+ I+ + + Y + T+ K + + V L+ + L +
Sbjct: 290 IIPRSSIGIGILLS-LLIIVVYYILYTLTKKIALNTGI--VLLPLLTDLFFFVLGGFL 344
>gi|253991457|ref|YP_003042813.1| inner membrane protein yjgp [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782907|emb|CAQ86072.1| inner membrane protein yjgp [Photorhabdus asymbiotica]
Length = 366
Score = 79.5 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 54/360 (15%), Positives = 124/360 (34%), Gaps = 25/360 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L EI E N + L VP +
Sbjct: 2 IIIRYLVRETLKSQVAILFILLLIFFCQRLVEILGAAVE-GNVPANLVISLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+ L+ ++ ++L + + +
Sbjct: 61 QLILPLSLFLGVLMTFSKLYTESEITVMHACGLGKRVLVVSALILALLTSALAAVNVIWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQ---------KSDIIPWMQISNPQQDIFIGAKKILPENH 174
K ++ + N +D + I + D F
Sbjct: 121 MPWSSKYQEQVLADARANPSLAAIMEGKFKPSNDGNLVLYIGSVHGDKFKNVFLAQLRPV 180
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ + + I ++ R D +I N + + + RI + +
Sbjct: 181 DNQRPSVV-ISDGGHMVERPDGKQVVILNHGTRYEGTAMLRDFRITEFNDYQAVVGHQAS 239
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
EQ + + K S +F++ + + L ++ M ++ +
Sbjct: 240 VVDGDKVEQKSIAQLWRDNDKDS-------------RAEFHWRLTLVLSVLIMAMMVVPL 286
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S+ R + + + + + + + + ++S G G L P+ + L++++
Sbjct: 287 SVVNPRQGRV-LSMLPAMLLYLIFFLLQSSLRSNGGKGKLDPLIWMWTVNGAYLMLALVL 345
>gi|159043739|ref|YP_001532533.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
gi|157911499|gb|ABV92932.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
Length = 380
Score = 79.5 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 50/351 (14%), Positives = 119/351 (33%), Gaps = 22/351 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M RY + T +F L +++ ++ + ++ ++ A L+ +P
Sbjct: 1 MLARYDRYILGRLMVTFGFFTLIIVLIYWINRSIRLFERLSG-DGQGLALFAQLSLLSLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+I ++P + + SE V +A GIS ++++ P + ++ +L+
Sbjct: 60 YLIYLMLPLAAFASAVSTGNRMGSDSETVALQAAGISAFRIVRPALYMGVMAAALMLLLA 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + DL +Q D + + + S A+ I E + +
Sbjct: 120 HLLVPMSRVAIADLEEQLADEVSARLLEPGKF--QSPIDGVTVFVAE-ITGEGVLSKVLL 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKV--------KLKKVVEYQYGRIPIDKNSTTLNIPI 232
S D ++I+ A+ A++ L + + + L +
Sbjct: 177 SDQRDPAEEVIY--TANQALLVRSDTGPQLVMISGLAQFLRADGTLSTLQFEDFALGLGE 234
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ +++ +S ++ + + P + ++ L+
Sbjct: 235 VEVPEDRVLRDLRGWDTARLLRADPADLESVGKSRGAFLSEAHRRLANPALAISTALLGF 294
Query: 293 SVSL--EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
S L FSR + VA I + ++ + + + +S AAA
Sbjct: 295 SALLVGGFSRFGFWQQ-VAGAILALIVIQLSVNMSEEIAQSD-----AAAW 339
>gi|325278209|ref|ZP_08143702.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
gi|324096649|gb|EGB95002.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
Length = 371
Score = 79.5 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 48/353 (13%), Positives = 115/353 (32%), Gaps = 31/353 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ R+P +
Sbjct: 2 IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQ-GVLDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+ + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMAPAALVALLVAWLSLSL 120
Query: 124 ATSGEK------------IGIDLIQQWKDNGDKQKSDIIPWMQISNPQ---QDIFIGAKK 168
A G D + + + S + Q+S+ + +FI K+
Sbjct: 121 APLGVAQVQQIIAQQDTLTEFDTLVPGRFQMLRDGSRVTYTEQLSDDRVKLGGVFISEKR 180
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ + + +K ++ I ++ N + Y I D L
Sbjct: 181 FNQDKTKDRAPSVLVAEKGHQEIQADGNRYLVLENGYRYDGNPGQADYRAIKYDTYGVLL 240
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
P + + F + R + + + +P+++ +T
Sbjct: 241 PKPEVAEEVTEREAIPTLDLF--------------GKTDLRERAELQWRLSLPILVFVVT 286
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
L+A +S + + + I T++ ++ + G L
Sbjct: 287 LLAVPLS-RVNPRQGRFLKLLPAILLYMAYLTMLISVRGALEKGKLPIALGMW 338
>gi|238897461|ref|YP_002923138.1| putative permease [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465216|gb|ACQ66990.1| putative permease [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 364
Score = 79.5 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 52/364 (14%), Positives = 125/364 (34%), Gaps = 33/364 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATRVPL 61
++ +Y K LKT + L + F L I + + ++P + I L ++
Sbjct: 2 VITKYLIKEILKTQVAILFILSFIFFSQKLVTILDDIINHDIPAHLIFSLLGLGFAKM-- 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P ++ + L SE++ A G+ +L+ +V + L +F + +
Sbjct: 60 -AELILPLSLFFALLMTYGKLYNESEIIAMYACGVGKTRLIKVALVLAALTSLFATINVF 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ K +I + + N + S+P I + + I +
Sbjct: 119 YFSPWSVKHEKKIINEERVNPGLSALVKGQF--QSSPDGKIVLFIQDIQNKKFHKIFLAQ 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-----VKLKKVVEYQYGRIPIDKNSTTLN------I 230
+ + A+ I + L + Y+ D T N
Sbjct: 177 RESNHTQRPTVVV-ANSGYISAPAPGIQLLTLNHGMNYEGIPPLGDFRITYFNHYQAVIS 235
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ ++Q + S +E +N + ++ + + + +V M +
Sbjct: 236 RKSVTKNSNTAQQMSMSSLWE----------ANDPDT---RAELHWRLTLIVSVVIMAFM 282
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A +S R + + + + + + + + ++S + L P+ + L L
Sbjct: 283 AVPLSQVNPRQGRV-LSMLPAMLLYLIFFLLQSTLRSNAGNNRLDPLIWLWLVNGLYTIL 341
Query: 351 SILI 354
+I++
Sbjct: 342 AIIL 345
>gi|213022333|ref|ZP_03336780.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 125
Score = 79.5 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 1/123 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ NY + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GNYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
IQ P L+ ++ L + SELV+ +A G + Q+ + +I L + T+ +
Sbjct: 63 DIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGE 122
Query: 122 PIA 124
+A
Sbjct: 123 WVA 125
>gi|149280024|ref|ZP_01886149.1| hypothetical protein PBAL39_24078 [Pedobacter sp. BAL39]
gi|149229221|gb|EDM34615.1| hypothetical protein PBAL39_24078 [Pedobacter sp. BAL39]
Length = 472
Score = 79.1 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 38/245 (15%), Positives = 82/245 (33%), Gaps = 10/245 (4%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
K +++ M ++ + L + + + + L + +P
Sbjct: 8 LLKAFIRPFFVTFFIVMFILLMFFLFKYVDDLIGK-GFEWYVILELMYYASAANVSMALP 66
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L+ +I+ F L ELV ++ GIS+ + + P +V + I + + +
Sbjct: 67 LSILLSSIMTFGTLGENYELVAIKSAGISLQKAMMPLLVLITCISISSFFFSDYMLPKAN 126
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
L+ ++ K+ S +I ++ + I K + + N
Sbjct: 127 LKFGSLLWDIRN---KKLSFLIKEGVFNSSIPNYSIRVDKKGADGVTLHNVMIYDHTSNN 183
Query: 189 KIIHRKDADLAIIYNDK----VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
I A + +D +KLK V Y+ S + F++ ++F
Sbjct: 184 GIAKIIIAKEGKMASDDKYLLLKLKDGVRYE--ESSGKNASYNPRQELTRMRFKETDQKF 241
Query: 245 ASRSF 249
SF
Sbjct: 242 DISSF 246
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
+ + ++ + + + I A + R + V + + + I T+ +
Sbjct: 360 KVQIEYQKKFTLAFSCLLLFFIGAPLGA-IIRKGGLGLPVVMAVVFFLIYHVISTVAEKS 418
Query: 329 GKSGILLPVAAALIPVILTISLSILI 354
+G LLP + +I+ L +
Sbjct: 419 ALTGTLLPFFGPWLAIIVLSPLGAFL 444
>gi|302345159|ref|YP_003813512.1| permease, YjgP/YjgQ family [Prevotella melaninogenica ATCC 25845]
gi|302149884|gb|ADK96146.1| permease, YjgP/YjgQ family [Prevotella melaninogenica ATCC 25845]
Length = 640
Score = 79.1 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 75/209 (35%), Gaps = 18/209 (8%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAV----- 53
M I L + K + + F+ I +FV+ + + + +L +S +
Sbjct: 1 MFQIKKLDIFIAKQFG---MLFMGTFFISLFVLMMQFLWRYVDDLIGKGLSMDVLGQFFW 57
Query: 54 -LAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
++ VP Q +P L+ +++ + NL +SEL +A GIS+ Q +V SI +
Sbjct: 58 YMSLMMVP----QALPLAILLSSLISYGNLGESSELTAIKAAGISLIQSFRGLIVVSIFI 113
Query: 113 GIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE 172
+ N + K L+ K + + + + + +K +
Sbjct: 114 AFGSFYFQNNVGPIAHKHIAQLLISMKQKSPELEIPEGIFY---DGIPQTNLYVEKKDLK 170
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAII 201
+ + + AD ++
Sbjct: 171 TGHLYNIMVYRMTDSYEDQAIILADSGML 199
>gi|288802960|ref|ZP_06408396.1| putative permease [Prevotella melaninogenica D18]
gi|288334477|gb|EFC72916.1| putative permease [Prevotella melaninogenica D18]
Length = 640
Score = 79.1 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 75/209 (35%), Gaps = 18/209 (8%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAV----- 53
M I L + K + + F+ I +FV+ + + + +L +S +
Sbjct: 1 MFQIKKLDIFIAKQFG---MLFMGTFFISLFVLMMQFLWRYVDDLIGKGLSMDVLGQFFW 57
Query: 54 -LAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
++ VP Q +P L+ +++ + NL +SEL +A GIS+ Q +V SI +
Sbjct: 58 YMSLMMVP----QALPLAILLSSLISYGNLGESSELTAIKAAGISLIQSFRGLIVVSIFI 113
Query: 113 GIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE 172
+ N + K L+ K + + + + + +K +
Sbjct: 114 AFGSFYFQNNVGPIAHKHIAQLLISMKQKSPELEIPEGIFY---DGIPQTNLYVEKKDLK 170
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAII 201
+ + + AD ++
Sbjct: 171 TGHLYNIMVYRMTDSYEDQAIILADSGML 199
>gi|187250532|ref|YP_001875014.1| permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
gi|186970692|gb|ACC97677.1| Permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
Length = 364
Score = 79.1 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 48/368 (13%), Positives = 123/368 (33%), Gaps = 28/368 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ +Y K L L L + + F++ ++ N + L VP
Sbjct: 3 INIISKYMIKNLLTFFLGALFVLVFIFFMMHFIKLFNLAMTFGADMLWVFKTLVKL-VPD 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ P + ++ N++ E++ RA G S ++ P + ++ L + N
Sbjct: 62 VFSLCAPMAFQLAVLLTLGNMSENGEIIALRAAGFSFKEITKPLFIFALFLFLVIFSFTN 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I K +D ++N + +I + D + + + P+ ++
Sbjct: 122 WITPKNTKSFLD----ARNNVRGRIGKVILEPKTFMEIGDWSLYMESLDPKTNLMSQVRL 177
Query: 182 ITIDKKNKIIHRKDADLAI-----------IYNDKVKLKKVVEYQYGRI-PIDKNSTTLN 229
+ + + +A I +++ ++++V +I + S +
Sbjct: 178 LNKNDSANYTTKINALSGIVNVTSDYVGLKLFDG--QMQRVSSEDPSKIMAANFKSYHVT 235
Query: 230 IPIKMDGFQKFS-EQFASRSFYEII--KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
P+ ++ E+F + I +++ ++ N ++ ++L
Sbjct: 236 FPLVRAKERRLREEEFTTPQLIARIYSGELTDKERAEHKTNVAMRQVLALSPLVLVLLS- 294
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
+ F + + + I Y ++ S GK + A +P+
Sbjct: 295 -----CPLVFSFGKRANKAWGMLWSIVIVLSFYMLLMAGVSLGKKYEIAAYFAPFLPIAA 349
Query: 347 TISLSILI 354
+ +S +
Sbjct: 350 GLIVSRYL 357
>gi|268678855|ref|YP_003303286.1| permease YjgP/YjgQ family protein [Sulfurospirillum deleyianum DSM
6946]
gi|268616886|gb|ACZ11251.1| permease YjgP/YjgQ family protein [Sulfurospirillum deleyianum DSM
6946]
Length = 353
Score = 79.1 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 54/362 (14%), Positives = 133/362 (36%), Gaps = 27/362 (7%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y K YLK L +G + +DL + + N I + A + I ++
Sbjct: 7 YIIKNYLKNFLVIFIGLDLFYVGVDLLTNYKNIPDSANLQI----LYALFQAMSAINYVL 62
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + IV +F + +T+EL+ A I+ L+ P +++L + + +N +
Sbjct: 63 PLSIVFAMIVTYFAMLKTNELICMYASSITKKALVRPLFGVALVLSLLHIG-LNYTEFAY 121
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
++++ + + I ++ KK+ P + D T ++
Sbjct: 122 AYEYGSNLKKYNRISNSSEDLFI-------KHDQQYVYFKKLDPLKQVAYDVTIFDVESA 174
Query: 188 NKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA- 245
+ + A +A D LK+V + ++ +D + + + F +
Sbjct: 175 D-VKRIIRAKMASFVKDVWWLKEVEITHKPSITSLDDKGFWIEKQETLQAMKNFKPKIMD 233
Query: 246 -------SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI--AASVSL 296
S S + I + F + + T FY L ++ A +
Sbjct: 234 NVYQSDFSLSIRDGIDALRFFETQGVNTSKIKSTLFYQLFFPFFAPFLSVILFYNAPLMG 293
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ ++ + F ++++ + ++ + +L+P A +P+++ +++ +
Sbjct: 294 RYF---NTALVASSFAFVTLLVWSSLFLLSRLAINSVLIPEIAIFLPIVMLAFIALYFYV 350
Query: 357 QK 358
++
Sbjct: 351 KR 352
>gi|294648981|ref|ZP_06726429.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
gi|292825116|gb|EFF83871.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
Length = 366
Score = 79.1 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 52/310 (16%), Positives = 111/310 (35%), Gaps = 13/310 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L +++ L +I + + + A R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVTALLTLIIMGGQLIKIFGRAAQ-GRLDGGVLLSIIAYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL + + + I +++
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRNQLTRLLLPMTAVFLIVQAVLMCWG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI- 182
A++G + L+Q ++ I A + + +D
Sbjct: 121 ASAGIRGYQSLMQTQAVRAGFDLVRPKEFI----SSGSYTIYAGSLSEDRKNLKDIFYYY 176
Query: 183 ---TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
DK +++I K+A I ND VV+ GR + + ++
Sbjct: 177 KSDREDKPDQMILAKEATRVEIENDT---ASVVDLVQGRRYEIYPNQPRYTQAEFQSYRL 233
Query: 240 FSEQFASRSF-YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
E +F E ++ +S S ++ + + I P ++V +A ++S
Sbjct: 234 RLENDKDVNFESEDVEALSMSKLWQKRDDFVVRGELGWRIFGPFVMVVALFLAVALSEVS 293
Query: 299 SRSNQPRIIV 308
R + ++
Sbjct: 294 PRQGRYYRLI 303
>gi|209964085|ref|YP_002297000.1| predicted permease YjgP [Rhodospirillum centenum SW]
gi|209957551|gb|ACI98187.1| predicted permease YjgP [Rhodospirillum centenum SW]
Length = 414
Score = 79.1 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 58/376 (15%), Positives = 131/376 (34%), Gaps = 35/376 (9%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNY---SISRGAVLAATRVPLI 62
R +Y L T L ++++V + L E ++ +L +AA VP
Sbjct: 20 TRLIDRYILTETAKPLALSLVVVMLALLLERILRLFDLLANHGGPFQLVLRMAANLVPHY 79
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P + VV +EL ++ G+S+ ++ PF+ L +F+VL+
Sbjct: 80 LGLALPAAFFISMFVVVARFGDENELDALQSSGLSVPRITRPFLWLGTGLMVFSVLLFGF 139
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + + ++ + Q + I A + P E
Sbjct: 140 IQPYSRYAYQAIHYAVVNAAWDATVPQSAFV---DAGQGVTITADMVDPTGRNLERVFVQ 196
Query: 183 TIDKKNKIIHRKDADLAIIY------------NDKVKLK-----KVVEYQYGRIPIDKNS 225
+ + + A+ + ++ V+++ V ++GR+ +D+
Sbjct: 197 QLRDGEEWVT--TAESGRLGVSDDRKRILLTLDNGVQVRTRPDATVEVVRFGRLTLDREF 254
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
T P + G + + ++ + + + E +F+ +V + L
Sbjct: 255 TLEAPPFRPRGGSER--ELTLVELWQEMHQPI-----TLVPRGTLEAEFHARLVRAVSLP 307
Query: 286 AMTLIAASVSLEFSR-SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
M L+A + + R I +A I + + I + +S G + +P
Sbjct: 308 LMPLLALPMGMAAKRARRGLGIALAAAILV--LYHHSIQMGESLADIGRVPAALGIWVPF 365
Query: 345 ILTISLSILILLQKED 360
++ L + + +D
Sbjct: 366 VVFALLCGWLFYRTQD 381
>gi|222824356|ref|YP_002575930.1| hypothetical protein Cla_1363 [Campylobacter lari RM2100]
gi|222539577|gb|ACM64678.1| conserved hypothetical integral membrane protein [Campylobacter
lari RM2100]
Length = 353
Score = 79.1 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 59/366 (16%), Positives = 117/366 (31%), Gaps = 33/366 (9%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ +RY YLK+ ID N++ + N + L
Sbjct: 2 NVFFRYISSLYLKSFFILFFSLTFFFVAIDFLVNFNKIPKSANLELLYILFLTC----SA 57
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQ-LLNPFVVGSILLGIFTVLVIN 121
+ I+P + I+ FN+ R++E V A+G+S Q + PF+ ++ L
Sbjct: 58 VSYILPLAIVFALILCVFNMIRSNEFVSLYALGLSKNQVIFYPFLWALFFCFVYIGLNFT 117
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
P A + E + G + ++ N F+ +K + +
Sbjct: 118 PFAYANEYKSNIIKT-----GLVSREGGNVLIKYDNK----FVYIEKTS--TNSLYNVKI 166
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ-YGRIPIDKNSTTLNIPIKMDGFQKF 240
+ K I A A +L V + ++ + + + + G + F
Sbjct: 167 FDV-KNLDIKQLTQAKKAQFNGQSWELIDVKTIKVPDKLIVSQEGLKIKDFKSIKGLENF 225
Query: 241 SEQF-------ASRSFYEIIKKMSFSN--KSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
S + S Y I + T Y L+ IP + L+
Sbjct: 226 SPKILERISLVESDPSYSISDALESILIFAKQDISTNTLRTSLYSLVFIPFFAPFLMLVI 285
Query: 292 ---ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
++ F + + S + L + + ++ ILLP ++P+ + I
Sbjct: 286 YYYFPITARFFNLAFLAFVFFISVLSAWGLLFL---LTRLSENEILLPEFGIMLPIFILI 342
Query: 349 SLSILI 354
+
Sbjct: 343 CMGSWF 348
>gi|300871686|ref|YP_003786559.1| permease YjgP/YjgQ family protein [Brachyspira pilosicoli 95/1000]
gi|300689387|gb|ADK32058.1| permease YjgP/YjgQ family protein [Brachyspira pilosicoli 95/1000]
Length = 431
Score = 79.1 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/199 (15%), Positives = 67/199 (33%), Gaps = 7/199 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+Y + + +L +FVI L ++ I + +P +
Sbjct: 6 KYIILEAIGPFIAGVL-FFTFIFVIQLLPELFKLILNNGAPIWTSLEIFVYMLPFNVAIT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP L+ I+ + L+ +E+++ RA+G S ++ P ++ +F++ N + T
Sbjct: 65 IPMSILMAGIMGYGRLSSDNEIIVMRALGFSHMRIYAPIIILGFFTFLFSLFFNNVVMTE 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
L + + + IS+ IGA + D
Sbjct: 125 SNYRYRALFSYIINIRPSIAVGKLEFAYISDINLS--IGAYYSDNNGMSN----VVIYDG 178
Query: 187 KNKIIHRKDADLAIIYNDK 205
++ A N++
Sbjct: 179 NSQARRIITAKSGKWKNNE 197
Score = 55.2 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 267 NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
Y +F+ I IP + M I A + + RS + + + Y +IT+ +
Sbjct: 335 PYFYYVEFHKFISIPAACLFMVFIGAPLGIVGKRSGR-GFGFGLSVIVVVVYYILITVAE 393
Query: 327 SFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + A P I+ + ++++
Sbjct: 394 IIAGNRKVPGFVAMWFPNIVLAVIGGFLMIR 424
>gi|148556806|ref|YP_001264388.1| permease YjgP/YjgQ family protein [Sphingomonas wittichii RW1]
gi|148501996|gb|ABQ70250.1| permease YjgP/YjgQ family protein [Sphingomonas wittichii RW1]
Length = 400
Score = 79.1 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 54/356 (15%), Positives = 127/356 (35%), Gaps = 17/356 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + L L+ A +L+ + + + + + +S + A +P +
Sbjct: 8 DRYVARLIATPLLATLVIAAMLLTLDKMLRLFDFVVSEGG-PVSVVWRMLANLIPEYMSL 66
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
IP ++ ++ F L +SEL + RA+G+S +LL ++ L + + ++ I
Sbjct: 67 GIPIGLMLGCLLAFRKLALSSELDVFRAVGMSYGRLLRVPYYYAVALALLNLAIVGFIQP 126
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
L + + + + ++ + + I + +T
Sbjct: 127 YSRYAYEGLRFELRSGALGASIKVGEFTKLG---KRMTIRVESSREGGRELSGIFVMTES 183
Query: 186 KKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLN-----IPIKMDG 236
K K + A+ D + L+ P K L +PI +
Sbjct: 184 KDGKSL-AVTAEHGQFLATDDPDTIILRLQKGVLVHDAPQFKEPRVLQFVGHDLPIDLPK 242
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR--AETQFYFLIVIPLMLVAMTLIAASV 294
+ F ++ + + + ++++ R ++F+F +V + + ++A ++
Sbjct: 243 MEAFRQRGGRDLEMTMPELVVTAHQATTPAKQRAQFRSEFHFRLVEVATMFLLPMLALAL 302
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
++ RS + V I + I S G + P+ A +P + +L
Sbjct: 303 AVPPKRS-SSALGVFLSIVMIVTQHKINEYAASVAALGRIDPLIALWVPFLAFAAL 357
>gi|23016381|ref|ZP_00056138.1| COG0795: Predicted permeases [Magnetospirillum magnetotacticum
MS-1]
Length = 372
Score = 79.1 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/368 (14%), Positives = 127/368 (34%), Gaps = 32/368 (8%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M GI RY + L ++ ++++ + SI L +P
Sbjct: 1 MSGI-TRYMMRQMLVGMIFVSAALACVLWLTQSLRFVEMIVNK-GLSIGAFLKLTILLMP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IIP V + + L EL++ RA G+S L P ++ + + L+
Sbjct: 59 GFLVVIIPISLFAVVLFTYNRLIADRELIVLRAAGLSHLSLARPAIILGLAVSAVGYLLS 118
Query: 121 NPIATSGEKIGIDLIQQWKDN----------GDKQKSDIIPWMQISNPQQD---IFIGAK 167
I + ++ +++ +K + +++ P + + + K
Sbjct: 119 CWIIPHTVRSFHEMQWTIRNDIGNVLLQEGMFNKFGEGLTIYVRSRTPNGELTGLLVHDK 178
Query: 168 KI-LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST 226
+ + + ++ ++ + + + + KL + +D N+
Sbjct: 179 RHPQRAVTLMAERGALVYTEQGPRVLMINGNRQEVTPGTGKLS---LLYFDNYTVDFNTA 235
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
T N P + ++ ++ + M + R +++ + + PL +
Sbjct: 236 TGNKPDRFRDARER----STLELLSMDDSMENKGE-----LRRFKSELHSRLASPLYNLG 286
Query: 287 MTLIAASVSL--EFSRSNQP-RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV-AAALI 342
L+AA+V L F R Q +++V+ + + S G + + A +
Sbjct: 287 FPLLAAAVLLTSGFDRRGQTVQVMVSAALMVAVQALALGASNLSSGNLAFVPLIYLNATL 346
Query: 343 PVILTISL 350
P+ + +
Sbjct: 347 PIAFGLWV 354
>gi|317503835|ref|ZP_07961845.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
gi|315665031|gb|EFV04688.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
Length = 632
Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/206 (14%), Positives = 65/206 (31%), Gaps = 12/206 (5%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLG---AMILVFVIDLNEIQNQMGELPNYSISRGAVLA 55
M I L + K + + +++ F+ + G +
Sbjct: 1 MIRIKKLDIFIAKQFGMLFVGTFFICQFVLMMQFLWRYIDELIGKGLSMEVMAKFFWYMG 60
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
VP Q +P L+ +++ F NL +SEL +A GIS+ Q +V +I +
Sbjct: 61 LMLVP----QALPLAILLSSLITFGNLGESSELTAIKAAGISLMQSFRSLIVITIFISGL 116
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+ + N I L+ + + + + + + + + +
Sbjct: 117 SFVFQNNIGPEANNKIAQLMISMQQKSPELEIPEGVFY---DGIPNSNLYVQHKDLKTGK 173
Query: 176 WEDFTSITIDKKNKIIHRKDADLAII 201
+ + AD ++
Sbjct: 174 LYGVMIYRMTGSYEDQAIILADSGML 199
Score = 36.0 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ E + + L + I A + R I V + + Y +
Sbjct: 366 RQHEIEAVSKFTVALSCLIFFFIGAPLGA-IIRKGGLGIPVIVSVLVFIIYYILDNSGYR 424
Query: 328 FGKSGILLPVAA-ALIPVIL 346
+SG+ L P +L
Sbjct: 425 MARSGMWTVWFGKGLAPGVL 444
>gi|254672901|emb|CBA07216.1| predicted permease [Neisseria meningitidis alpha275]
Length = 124
Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 48/126 (38%), Gaps = 4/126 (3%)
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
MD +Q + I+ + +++ + ++ +V P M L+A +
Sbjct: 1 MDVLLVKPDQMSVGELTTYIRHLQNNSQ----NTRIYAIAWWRKLVYPAAAWVMALVAFA 56
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ + +R + + GI G + + + + P A +P I L++
Sbjct: 57 FTPQTTRHGNMGLKLFGGICLGLLFHLAGRFFGFTSQLYGIPPFLAGALPTIAFALLAVW 116
Query: 354 ILLQKE 359
++ ++E
Sbjct: 117 LIRKQE 122
>gi|257457656|ref|ZP_05622823.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
gi|257445042|gb|EEV20118.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
Length = 300
Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/299 (14%), Positives = 86/299 (28%), Gaps = 18/299 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL RY + + + +L ++L+ + DL Q + + +P
Sbjct: 2 KILQRYLLQLFFPVFVITILFFILLLQLGDLFLNLAQYLQN-QVRFVTLLRVMYLYLPKC 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P L + N+ +EL A G+ + L+ P V+ L I +
Sbjct: 61 ISFAMPLSVLFASSYTMGNMYAKNELTSIFASGMPLTVLVAPLVLCGFALSIGMFYFEDR 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I ++ I L+ + + S + + + I A + +
Sbjct: 121 ILIHFQRQKIALVNELLEPQQNLNSSDLVIL---SESGKIVYFADYYDDNRKELSNVLIV 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ + A D + Y + ++ + + + F
Sbjct: 178 MRTESGDVSTVIKGSSAQWQTDHWAITDKSIYTFTAENDVHYQDAIDEGLFSEPSETFQR 237
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S I +MS + N + P + I A RS
Sbjct: 238 NITS------IDEMSIAQAKVFIDNLK-------KWACP-TMNIFLNITAVFHFRLRRS 282
>gi|153004268|ref|YP_001378593.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
gi|152027841|gb|ABS25609.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
Length = 370
Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/368 (11%), Positives = 105/368 (28%), Gaps = 28/368 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY K L LL ++ L + + S+ + +P +
Sbjct: 3 LLHRYLAKEILLPFAAGLLFLTQILLATQLLAQADVLFG-SGVSLVDVGAVVLYLLPYFL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P L+ ++ L E+V A G S L+ + + + + + +
Sbjct: 62 GYVLPIAFLLGAVLGVGRLAEDREVVALGAAGFSPAFLVPVPLAIGVAVAGLGLWLSLDV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + A+++ W +
Sbjct: 122 VPRSLDAARLRLNEIVKRNVMNDVRPGTFYDQIPG---YTLYAERVH--GGRWGNVLISD 176
Query: 184 IDKKNKIIHRKDADLAIIYN------DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ A + ++ L ++ +D + L + D
Sbjct: 177 RSDPAAPVLAL-ARAGGLEPVGAGEEMRLVLDDGEVHREQ---VDADEYVLATFRRADVV 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFH----------NYRAETQFYFLIVIPLMLVAM 287
+ R+ + + RAE + I PL ++
Sbjct: 233 LGLGTALSDRNAVSRTGRDDLAGLQARVAEARAKGDAAAARRAEGSLHRRIASPLAVIPF 292
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
L+A L SR V Y ++ + + G+L A +P ++
Sbjct: 293 ALLAVP--LGASRRAGRAFGVGATFLVVVAHYLLLRSGEVMAQRGVLPAPLALQLPTLVL 350
Query: 348 ISLSILIL 355
++++ ++
Sbjct: 351 SAIALALI 358
>gi|114766153|ref|ZP_01445157.1| Predicted permease [Pelagibaca bermudensis HTCC2601]
gi|114541613|gb|EAU44655.1| Predicted permease [Roseovarius sp. HTCC2601]
Length = 371
Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/352 (13%), Positives = 124/352 (35%), Gaps = 20/352 (5%)
Query: 18 LYFLLGAMILVFVIDL-----NEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITL 72
L + G LV V+ + +++ +S + +P +I ++P
Sbjct: 5 LMVVFGFFALVLVMVYWVNASVSLFDELIT-DGHSARIFLEFSLLSLPGVIALVLPMAAF 63
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
+ V ++ SE+ + +A G+S W+L P +V +L+ + ++ + + +
Sbjct: 64 GAAVYVTNRMSNESEMTVLQAGGLSPWRLGRPVLVFGVLIALMMSVLTHALVPASVAQLR 123
Query: 133 DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIH 192
D + ++ + ++ +P + + ++I + + + + S + + + +
Sbjct: 124 DRESEISESVAARLLHEGTFL---HPARGVTFYIREITDDGELRDVYLSDRRNDQRTVTY 180
Query: 193 RKDADLAIIYNDKVKLK-------KVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
+ + KL +V + T +I + +
Sbjct: 181 TAETAYVTRDDGGPKLTMRSGLAQEVQTKDLTLSTTNFTDLTYDISGLITSGGSERRRAR 240
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI--AASVSLEFSRSNQ 303
E++ + + + + +PL+ V LI AA ++ FSR
Sbjct: 241 QIPTLELLTQTEAVAEEVNDSIGEVLEEAHNRFQMPLLCVVAALIGYAALMTGTFSRFGV 300
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ IV + I + + P+ +P ++ +L+ ++L
Sbjct: 301 TKQIVGAIFLLVLVKLVESAITEPVRSTPAFWPLV--YLPSLVGFALAAVLL 350
>gi|260642684|ref|ZP_05416897.2| putative permease [Bacteroides finegoldii DSM 17565]
gi|260621031|gb|EEX43902.1| putative permease [Bacteroides finegoldii DSM 17565]
Length = 632
Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 6/193 (3%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
+K+ +G + I + + + EL + S A ++ +P
Sbjct: 11 IVKSFFMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLVPVSLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ +++ F N EL+ +A GIS+ +++ P V L + N + +
Sbjct: 71 AVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLVFFVCGLVGVSFYFQNVVGPIAQA 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
LI K + + + K + + D + +
Sbjct: 131 KLGTLILSMKQKSPELDIPEGVFYSEIPDYN---LKIAKKDRKTGMLYDVLIYNLKDGFE 187
Query: 190 IIHRKDADLAIIY 202
H AD +
Sbjct: 188 NAHIIYADSGRLE 200
Score = 53.3 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 6/159 (3%)
Query: 196 ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKK 255
A + D VK++K Y Y + + + +E AS +
Sbjct: 300 ASYGLTKEDTVKMEKADVYAYNVDSLYNVAPLTQKQKVISAALSRAENMASD-----LTF 354
Query: 256 MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG 315
S++ +SN + + +T+++ I I L + I A + R + V +
Sbjct: 355 KSYTMESNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLVF 413
Query: 316 FMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I + G + + L I +
Sbjct: 414 IIYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGIFL 452
>gi|254465542|ref|ZP_05078953.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
gi|206686450|gb|EDZ46932.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
Length = 364
Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 51/352 (14%), Positives = 126/352 (35%), Gaps = 20/352 (5%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
F ++ VF ++ + S A +P +I+ ++P +
Sbjct: 7 FFGFFALILVAVFWVNRAVVLFDTLIGNGQSALVFLEFTALTLPNLIRMVLPIAAFGAAV 66
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V LN SEL + RA G S WQ+ P + I+ + + + + + +
Sbjct: 67 WVTNRLNSESELTVLRATGTSPWQMARPALAFGIITALMMSALTHYLLPASINQLEERES 126
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
+ N + ++ +P + + ++I P+ + + F S D + +
Sbjct: 127 EVSRNITAKLLSEGDFL---HPAEGVTFYIRQIDPDGTLNDVFLSDRRDPAVTVTY--TG 181
Query: 197 DLAIIYNDK----VKLKKVVEYQYGRIPIDKNSTTLN-IPIKMDGFQKFSEQFA----SR 247
A + D+ + + + + + ++T + + + +E A +
Sbjct: 182 TRAFLVRDEGSAHLIMVEGMAQRLDNETQRMSTTFFSDFSYDISALARKAENPARNIRAI 241
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL--EFSRSNQPR 305
E++ +++ + + + L+ VA+ LI S + FSR R
Sbjct: 242 PSLELMTSTEAVTRTDGYSAGAQAEELHLRFARALVCVAVALIGFSALMLGTFSRFGVWR 301
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKS-GILLPVAAALIPVILTISLSILILL 356
+ F+ + + + G+ + +P +L +++S++ L+
Sbjct: 302 QAFLAFVVLIFVEGLRGVVSEPVLDNPGLWPLIY---LPTLLGLAVSLIFLI 350
>gi|209885016|ref|YP_002288873.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
gi|209873212|gb|ACI93008.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
Length = 385
Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/332 (11%), Positives = 109/332 (32%), Gaps = 24/332 (7%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M G + Y + L + L L+ +++V + M ++ + +P
Sbjct: 1 MLGSIDAYVVRSTLLSFLIVLISLTGVIWVTQALRGIDLMTA-QGQTVLVFLGITGLAIP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I P L+ L SE+++ A G+S W+ L PF+ ++++ +
Sbjct: 60 VLALIIAPLAILLAVTHTLNRLATDSEIIVMNAAGLSPWRFLRPFMYSTVIVACLISFLA 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A + + + ++++ + + ++ P +
Sbjct: 120 VFLAPECLRALRRWHTEIGADVLANVLQPGQFIRLD----KLVLRVQERRPGGVL----V 171
Query: 181 SITIDKKNKIIHRKD--ADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ ID + R + A ++ + L ++ K+ +
Sbjct: 172 GVFIDDQRNPAERINITAQNGVVQKTDKGSFLVLSDGNLQRFQAD--KKDPLIVAFKSYA 229
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFS------NKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+FS+ + ++ + +S ++ + + + ++ L
Sbjct: 230 FDMSQFSQAPQTYNYNARERFISELISPPKDDQVAQRSLGQFRAELHDRLLAGLYPFVFV 289
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
++A + L R+ + A + +L
Sbjct: 290 ILAFAF-LGPPRTTRQGRNFAISMLILVVLVV 320
>gi|99080790|ref|YP_612944.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
gi|99037070|gb|ABF63682.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
Length = 379
Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 58/363 (15%), Positives = 127/363 (34%), Gaps = 23/363 (6%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY YL +F L + + ++ + + + S+ ++A +P +++
Sbjct: 5 DRYVLSQYLLFFGFFALILVAVFWINRAVSLFDWLIG-DGQSVLAFLEISALSLPNLVRM 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSIL----LGIFTVLVIN 121
++P + V LN SEL + RA G S WQL P +V +L + ++ ++
Sbjct: 64 VLPLAAFAATVWVTNRLNSESELTVLRATGSSPWQLARPAMVFGLLSAAMMSALSLFLLP 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +L + S + P + FIG I P+ + F +
Sbjct: 124 ASLAQMQFREAELSRSVSAKLLNAGSFLHP-----SEGITFFIG--SIEPDGTLQNVFLT 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
D +I + D + +D+ + L + + ++T + G
Sbjct: 177 DQRDPSVEITYTSDRAYLVREDDEAHLILVDGLAQRKEAHNDRLSTTAFSDFSYPLGDLS 236
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET-----QFYFLIVIPLMLVAMTLIAASV 294
+ +R I +++I + + + A+ +I S
Sbjct: 237 PARAAGARPLRNIPTLDLLRERASITEEEGHSAGAQAEELHLRFARAAVTFAVVMIGVST 296
Query: 295 SL--EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
L FSR + ++ + + + ++ + P+ +P L + +S+
Sbjct: 297 LLMGGFSRFGIWKQVLGAFVLLILIEGMRGVVADPVRENAAMWPLI--YLPATLGVMISV 354
Query: 353 LIL 355
L L
Sbjct: 355 LFL 357
>gi|170743203|ref|YP_001771858.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
gi|168197477|gb|ACA19424.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
Length = 388
Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/318 (14%), Positives = 104/318 (32%), Gaps = 29/318 (9%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ L L L G +++V + + ++ ++ +P ++
Sbjct: 4 IERYIFRIALGAFLACLAGLTGVIWVTQALRELDLVTAKGQ-TVLIFFLITGLSIPALLT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ P + + LN SEL++ A G+S QLL PF+ ++++ + +
Sbjct: 63 VVAPVALFMAVVHALNRLNGDSELIVMSAAGMSPRQLLRPFLTLALIVSAALGFLTIQVL 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
S + DL+ + + + + + +
Sbjct: 123 PSSFQELRDLLTRVRGDFIANVVQEG----QFTSLDNGITFHFRESAPGGVLLGIFMQDR 178
Query: 185 DKKNK----IIHRKDA-----------DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
+ + + R A + I+ + + + R +D + T
Sbjct: 179 REAGRSVTYLAERGQALDLDGQTYLVLEKGSIHRQQQNSRDASIISFARYAVDLAAFT-- 236
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
P D K E+ ++ + + + R + + + L +AM L
Sbjct: 237 -PPDTDTVYKPRERSTAQLLFPDPNEHYYKLVKG-----RFRAELHDRLTSWLYPLAMAL 290
Query: 290 IAASVSLEFSRSNQPRII 307
IA + +L R+ +
Sbjct: 291 IAFA-ALGDPRTTRQGRG 307
>gi|319784423|ref|YP_004143899.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317170311|gb|ADV13849.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 400
Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/331 (15%), Positives = 111/331 (33%), Gaps = 23/331 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + + L+ + +V+ + + + + S +AA +P I
Sbjct: 2 KVVERYIMRRAFVVFMAALVWTLAIVWTTQVLAKIDLVTD-SGQSALTFFEVAALILPSI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I ++PF +V +N SEL + A G S W ++ P ++ ++ +F+ V N
Sbjct: 61 IPIVVPFALVVAVAQTLSVMNSDSELAVVNAAGASRWTIVRPIMLLALAAAVFSFAVDNG 120
Query: 123 IATSGEKIGIDLIQQWKD--------NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
I + L+ + G +K D ++Q+ + +G I +
Sbjct: 121 IDPYARQKNRALVASSRADLLSLIIQEGTFRKIDDGLFLQVGERLPNNRLG--GIFVADS 178
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
E + K II R + ++ + + + G + + + ++
Sbjct: 179 REEGVNLVYYAKTGSIIERGGEKVLMMNDGVIH----RKTLTGDLSVIRFTSYAFDMSAF 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + S ++K Y + + LIA +V
Sbjct: 235 MAAASAVTLLPKDQTTQYLLNPSANDKYYQQSPYEYRAEVNQRFSEWTYSMVFALIALAV 294
Query: 295 -----SLEFSRSNQPRIIVAYGIF---SGFM 317
S +R N + +F GF
Sbjct: 295 AGDARSHREARVNPLITAITISLFVRWLGFF 325
>gi|293369978|ref|ZP_06616545.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
gi|292634896|gb|EFF53418.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
Length = 638
Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/240 (14%), Positives = 78/240 (32%), Gaps = 6/240 (2%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
+K+ L +G + I + + + EL + S A ++ +P
Sbjct: 17 IVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLVPVSLPL 76
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ +++ F N EL+ +A GIS+ +++ P L + N + +
Sbjct: 77 AVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLIGVSFYFQNVVGPIAQA 136
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
LI K + + + +D + K + + D ++ +
Sbjct: 137 KLGTLILSMKQKSPELDIPEGVFY---SEIKDYNLKVAKKNRKTGMLYDVLIYSMKDGFE 193
Query: 190 IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
AD + K + G + + + ++ ++F E+ F
Sbjct: 194 KARIIYADSGRLEMTADKQHLWLHLYSGDLFENLKAQSMKSENVPYRREEFREKHTIIEF 253
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 1/98 (1%)
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 362 KFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLVFI 420
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I + G + + L I +
Sbjct: 421 IYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGIFL 458
>gi|154246777|ref|YP_001417735.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
gi|154160862|gb|ABS68078.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
Length = 405
Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/217 (14%), Positives = 72/217 (33%), Gaps = 22/217 (10%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G L RY F L ++ +++ + + I+ A + + +P +
Sbjct: 2 GRLDRYIFSTAAVAFLGVVVVLAGMIWATQALRQLDLVTSQGQTIIAFVA-ITSLTMPTL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I P + LN SE+V+ + G+ W+LL P ++ ++L+ F L+
Sbjct: 61 VLVIAPAALFIATAYTLLKLNGDSEIVVMASAGMGPWRLLRPLIILALLVSAFCALLAIK 120
Query: 123 IATSGEKIGIDLIQQWKDNGDK----------QKSDIIPWMQISNPQQD---IFIGAKKI 169
+ + + + + + + ++ ++ P IFI +
Sbjct: 121 VVPASLATFREQVTKVRADVVSFVAQPGRFVNLSQGLVFHVRERAPNGVMRGIFINDARD 180
Query: 170 LPENHIW--------EDFTSITIDKKNKIIHRKDADL 198
+ D + + I R A
Sbjct: 181 DGVSTYLADRGQIIESDAGIFLVLENGSIQRRGGAAK 217
>gi|86158887|ref|YP_465672.1| permease YjgP/YjgQ [Anaeromyxobacter dehalogenans 2CP-C]
gi|85775398|gb|ABC82235.1| permease YjgP/YjgQ [Anaeromyxobacter dehalogenans 2CP-C]
Length = 371
Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/363 (11%), Positives = 121/363 (33%), Gaps = 13/363 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G++ RY + L LL ++ + + + S+ ++ + +P +
Sbjct: 2 GLIDRYLAREILLPFAAALLFLTQILLATQILGQADVLFG-SGVSLVDVGLVMLSLMPHL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +IP L+ ++ L E+V A G+S +L+ ++ +++ +
Sbjct: 61 LGYVIPVAFLLGVVLGVGRLAEDREVVALGAAGLSPVRLVRVPLLLGLVVAALGAWLSLS 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK-----KILPENHIWE 177
+ + + + + A+ +L ++
Sbjct: 121 VEPASIRAARLRLNDVVKRNVTNDVRGGTFYDQIPGYTIYTERARGGRWENVLIQDRSNP 180
Query: 178 DFTSITIDKKNKIIHRKDADLA---IIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
D + + ++ ++ A ++ +V ++V Y K + + +
Sbjct: 181 DAPMLALSRRGRL-EPVGAGQDMRLVLEQGEVHREEVGTADYASAAFGKAELLVGLGTAL 239
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSN-IFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
++ + ++ + + + + + R E + + PL++VA L+
Sbjct: 240 SDRNVLAKSSREATVSDLRARAAAAREKGDVVEERRQEGYLHRKLSAPLVVVAFALLGVP 299
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
L R + + Y ++ + + G L A +P ++ + +
Sbjct: 300 --LGAERRGGRAFGMGATFLLVVVHYLLLRGGEVLTQLGHLPAAFALQLPNLVLGAAGVA 357
Query: 354 ILL 356
++L
Sbjct: 358 LVL 360
>gi|227821476|ref|YP_002825446.1| putative permease protein [Sinorhizobium fredii NGR234]
gi|227340475|gb|ACP24693.1| putative permease protein [Sinorhizobium fredii NGR234]
Length = 390
Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/323 (13%), Positives = 108/323 (33%), Gaps = 18/323 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY F+ L LL + +V+ N + + SI LA +P +
Sbjct: 2 KLIERYIFRRATIMFLATLLPLLGIVWTTQALSNVNLVTD-SGQSIFAFLKLATLILPSV 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I+PF L+ +N SEL + A G S ++ P + ++ L + + ++ N
Sbjct: 61 VPIILPFALLIGVTQTLSVMNTDSELTVLNAAGSSRMSVIRPVIYLAVGLSVLSFVIDNF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ +I + + +I + + A++ + +
Sbjct: 121 VEPYSRVAVRKMIATAHADLLSSVVQENAFRRI-TDGLYVQVAARRS---GGVLHGI-FV 175
Query: 183 TIDKKNKIIHRKDADLAII--YNDKVKLKKVVEYQY----GRIPIDKNSTTLNIPIKMDG 236
+ A + + +K ++ G I +S ++
Sbjct: 176 ADSRNPNFELVYYAREGAVDEERSALVMKDGEVHRKLPDGGVSVIKFDSYAFDLTDMTRT 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV---IPLM--LVAMTLIA 291
+ + + R + +I ++ S + + + PL+ L+A+ + +
Sbjct: 236 AGEATIRAKDRDLFYLID-PDPNDPSYKRSPLAFTAELHRRLSEWTYPLLFGLIALVVSS 294
Query: 292 ASVSLEFSRSNQPRIIVAYGIFS 314
+ S +R + V +
Sbjct: 295 DARSHREARVHPTISAVGAALVI 317
>gi|146308541|ref|YP_001189006.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina ymp]
gi|145576742|gb|ABP86274.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina ymp]
Length = 372
Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/355 (15%), Positives = 118/355 (33%), Gaps = 35/355 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q + ++ R+P +
Sbjct: 2 IVFRYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQ-GALDPGVLFLIMGYRIPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL----LNPFVVGSILLGIFTVLV 119
Q I+P + ++ + L SE+ + A G+S +L + P ++ ++L+G ++ +
Sbjct: 61 QLILPLGLFLGFLLAYGRLYLDSEMTVLSATGVSQQRLTAYSMAPALIVALLVGWLSLGL 120
Query: 120 INPIATSGEKIGID-------------LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGA 166
S +I + Q KD S + + + + +F+
Sbjct: 121 APQGVASVARILNEQDALTELDTLVPGRFQSMKDGSRVTYSQELSADR--SELRGVFMSE 178
Query: 167 KKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST 226
K+ + T + + + I + I+ N + E Y I D
Sbjct: 179 KRFSSDGSSERGITVLLAESGRQEIQADGSRYLILENGYRYDGEPGEADYRVIQYDTYGV 238
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
L P + F + R + + + + IPL++
Sbjct: 239 LLPKPEVAIEASEREAMPTRELF--------------GSDDPRVQAELQWRLSIPLLVFV 284
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+TL+A +S R + + + IF ++ + G L P
Sbjct: 285 VTLLAVPLSKVNPRQGR-FLKLLPAIFLYMAYLGLLIAARGALDKGRLPPALGLW 338
>gi|305432868|ref|ZP_07402026.1| integral membrane protein [Campylobacter coli JV20]
gi|304444022|gb|EFM36677.1| integral membrane protein [Campylobacter coli JV20]
Length = 352
Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 63/360 (17%), Positives = 126/360 (35%), Gaps = 24/360 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK L + IDL N + + N S+ LA +
Sbjct: 3 IFFRFISGIYLKNFFIIFLSLLGFYCGIDLLLNFNDLPDAANLSLLYVIFLAF----SAV 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI-WQLLNPFVVGSILLGIFTVLVINP 122
++P + ++ ++ R +E V A+G+S ++ PF+ ++ L P
Sbjct: 59 TYVLPVSLIFALVLSLVSMIRANEFVSLYALGLSKNLVIIFPFLWALFFCFVYVGLNFTP 118
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A D + NG K +++ +N FI K+ ++
Sbjct: 119 FA-----YANDYKRNILKNGTMLKQSGEVFLKFNNE----FIYISKVNNGQSTAQNIKIF 169
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV------VEYQYGRIPIDKNSTTLNIPIKMDG 236
I K + +A I LK+ EY+ G ++ + +
Sbjct: 170 NI-KDLNLSSFIEAKSGIFEKKNWILKEGNLTLLPKEYELGNKGLNISEFK-ELNTLEGF 227
Query: 237 FQKFSEQFASRSFYEIIKKMSFSN--KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
K E AS S Y I+ + K+ + Y L+ +P + LI
Sbjct: 228 KPKIIEGVASDSDYSILDILESLELFKTQNISIESLKISLYKLVFMPFFAPFLMLIMYYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+R + + ++++ ++ ++G++L ++P++L I L +
Sbjct: 288 FPVIARFFNLAFVAFVAFVVTLLTWSMLFLLSRLSENGVILSELGIVMPIVLLIFLGGFM 347
>gi|255322347|ref|ZP_05363493.1| ribonuclease PH [Campylobacter showae RM3277]
gi|255300720|gb|EET79991.1| ribonuclease PH [Campylobacter showae RM3277]
Length = 341
Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/322 (16%), Positives = 113/322 (35%), Gaps = 16/322 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY F +L T +++ ++ +I + + L +P ++
Sbjct: 6 RYLFSNFLGTFASLFATLFLIMSIVFFIQIAR-ITSYIEITFIELFKLYMFMLPRVLLFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P V ++FF L+R +E ++ +G S ++ F++ S + IF ++ + +
Sbjct: 65 VPIAFFVSLALMFFRLSRENESIVLFTLGYSPVRIAKFFLIVSGAVSIFLIVTAIILIPT 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ + + K + + +FI +K ++E T +
Sbjct: 125 AAELNSNFVSYKKT--VAKLNLKTTEFGQKFSDWMVFIQNEKSDENGTLYEGVTLYS--P 180
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
K A A + N+ L+ + D + + + +
Sbjct: 181 KEGAHRFVLAKNARLTNNNAVLEFTLSEGKIYDMRDASWHKTDFGTMKISTAQEDSVAQT 240
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+SF + + MS K Y LI L +A TL A S+ + R + +
Sbjct: 241 KSFVQYWQAMSEDKKRAKDFAT------YVLIA--LFPLATTLFALSLGIVTYRYEKGFV 292
Query: 307 IVAY-GIFSGFMLYTIITIMKS 327
G+ F +T+I + S
Sbjct: 293 YFGIFGVL--FGYFTLIMLFSS 312
>gi|298483137|ref|ZP_07001317.1| permease [Bacteroides sp. D22]
gi|298270654|gb|EFI12235.1| permease [Bacteroides sp. D22]
Length = 632
Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/240 (14%), Positives = 78/240 (32%), Gaps = 6/240 (2%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
+K+ L +G + I + + + EL + S A ++ +P
Sbjct: 11 IVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLVPVSLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ +++ F N EL+ +A GIS+ +++ P L + N + +
Sbjct: 71 AVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLIGVSFYFQNVVGPIAQA 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
LI K + + + +D + K + + D ++ +
Sbjct: 131 KLGTLILSMKQKSPELDIPEGVFY---SEIKDYNLKVAKKNRKTGMLYDVLIYSMKDGFE 187
Query: 190 IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
AD + K + G + + + ++ ++F E+ F
Sbjct: 188 KARIIYADSGRLEMTADKQHLWLHLYSGDLFENLKAQSMKSENVPYRREEFREKHTIIEF 247
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 1/98 (1%)
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 356 KFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLVFI 414
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I + G + + L I +
Sbjct: 415 IYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGIFL 452
>gi|302383687|ref|YP_003819510.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
15264]
gi|302194315|gb|ADL01887.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
15264]
Length = 376
Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 48/358 (13%), Positives = 112/358 (31%), Gaps = 14/358 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+Y F+ L + + + + E S+ L VP + I
Sbjct: 6 KYLFRQISLPVLAACASLAGIGILSQTLDQLEIIVERGQ-SVWVLLKLTLLAVPQLFSVI 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P V ++ L R EL + A G+S WQ++ P ++ + + +L I
Sbjct: 65 LPIGLFVGALIALTRLQREQELTAAYASGMSRWQMIAPGAWLAVCVAVVMLLTNVVIQPW 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ + + + + ++Q N + + ++I + F I
Sbjct: 125 SQRTAREQAFSIRTDLAALLVEEGRFVQGPNG---LTVYVQQIEQNGLLKNLFIYIQNGD 181
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP-----IDKNSTTLNIPIKMDGFQKFS 241
+ +A + V K +Q + + + + QK
Sbjct: 182 EVTTWDASEARFGRVDGQPVLTMKQGSWQQYSSAGVLQQLVFDGYVFPLGQYVTDDQKIR 241
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE--FS 299
+ A ++ + + + + PL + +A + L FS
Sbjct: 242 YKPADLWMGQLFNPTDALVRDTG-SRGELLAEAHSRLSSPLYALTAMAMALTAILGGAFS 300
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R+ I + ++ + +G L L I+ ++++ +L +
Sbjct: 301 RTGYSARIAKASGAFLLVRVVGYAVVAASAWNGWLNVFQYVL--PIVATAVALRLLFR 356
>gi|90021020|ref|YP_526847.1| queuine tRNA-ribosyltransferase [Saccharophagus degradans 2-40]
gi|89950620|gb|ABD80635.1| permease YjgP/YjgQ [Saccharophagus degradans 2-40]
Length = 360
Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/328 (10%), Positives = 107/328 (32%), Gaps = 32/328 (9%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
L R+P ++ I+P + ++ + L SE+ + A G+S +L+
Sbjct: 29 GELDGGVLLTLMTYRLPAYLELILPLGLFLGILMAYGRLYLESEMTVLHACGLSQGKLIG 88
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
+V + ++ + + G + L+ + ++ D + + ++
Sbjct: 89 FTMVSTFVVACVVGVFSLYLGPEGVRASEKLLAEQRNRTDFETLKPARFHELDGGSG--I 146
Query: 164 IGAKKILPENHIWEDFTSI-----TIDKKNKIIHRKDADL---AIIYNDKVKLKKVVEYQ 215
A+ I + + ++D ++ + + A + LK Y
Sbjct: 147 SYAESISDDKQKLQKVFMAKLAPDSVDDDLTVLTAESGETVVDAETGVKYLLLKNGRRYV 206
Query: 216 YGRIPIDKNSTTLNIPIKMDGF--------QKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
++ ++ +K ++ ++ +E
Sbjct: 207 GRPGEVNYKVVEFKTFSQILPEPDYEAVKPKKETDGLSTAQLFE-------------RDT 253
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
A + + +P++++ + L+A +S R + ++ + F L + +
Sbjct: 254 LAARAALQWRLSLPVLVMVVGLLAVPLSRTQPRQGRYAKMLPAILLYIFYLVCVNGARGA 313
Query: 328 FGKSGILLPVAAALIPVILTISLSILIL 355
+ G + + L++L++
Sbjct: 314 I-EDGSAPFIGLLWVVHGAFFCLALLLI 340
>gi|331007487|ref|ZP_08330658.1| putative permease [gamma proteobacterium IMCC1989]
gi|330418711|gb|EGG93206.1| putative permease [gamma proteobacterium IMCC1989]
Length = 408
Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/314 (13%), Positives = 105/314 (33%), Gaps = 18/314 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P I+ RY K L+TT +I++ + + + R+P
Sbjct: 28 PMIIPRYLTKEVLQTTFAVTSVLLIIIMSGRFVKYLAEAAA-GKIDARVLFAVMFYRLPG 86
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ I+P V ++ + L SE+ + + G+S QL+ + + ++ I +
Sbjct: 87 FMELILPLGFFVSILLAYGRLYTDSEMTVLFSCGVSRKQLIAWTYIPAGIVLIIIATLSL 146
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ G ++ Q + D + + + + + + I F
Sbjct: 147 WLTPLGLHEAEKILAQQQARNDFETMQEARF--QVSRNKSLVSYTEDISDNREQLNAFFL 204
Query: 182 ----ITIDKKNKIIHRKDADLAIIYN---DKVKLKKVVEYQYGRIPIDKNSTTLNIPIK- 233
+ D+ + + A+ I+ + LK+ Y+ + T +
Sbjct: 205 ANMNVGADEPLMTVRSEVAEYKILGETDQRYLVLKRGARYEGQPGTANYRITEFEEFGQH 264
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+D + + + ++ + + + + PL+++ +TL+
Sbjct: 265 VDPKGEIAVTNNKVNRLPTVELL-------GSDLPDYQAALQWRLSSPLVVLIVTLLGVL 317
Query: 294 VSLEFSRSNQPRII 307
S R + ++
Sbjct: 318 FSHTNPRRGRYAML 331
>gi|284036898|ref|YP_003386828.1| permease YjgP/YjgQ family protein [Spirosoma linguale DSM 74]
gi|283816191|gb|ADB38029.1| permease YjgP/YjgQ family protein [Spirosoma linguale DSM 74]
Length = 501
Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/199 (16%), Positives = 71/199 (35%), Gaps = 11/199 (5%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITL 72
+ T + ++ + + ++E ++ +L + A +P +P L
Sbjct: 16 FFLTLGVVIFIFLMRLLMFYIDEFVSKDLDLATFG-RLLFYFALLTIPTA----LPLAVL 70
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
+ +++ F NL EL ++ GIS+ + + P ++ +I + F+ N +A G
Sbjct: 71 LSSLMTFGNLGEFFELTALKSAGISLTRAMRPLLIVAIGISAFSFWFNNSVAPWANLKGY 130
Query: 133 DLIQQWKDNGDKQKSDIIPWMQI---SNPQQDIFIGAKKILPENHIWEDFTSI---TIDK 186
L+ K + + + D I A+K + + T
Sbjct: 131 SLLYDIKTAKATLNLKEGIFYNDLPGYSIKVDRKIKAEKGSTTGDLLKGLVIYKHPTSGL 190
Query: 187 KNKIIHRKDADLAIIYNDK 205
+ AD +Y DK
Sbjct: 191 ETGNREIILADSGRMYTDK 209
Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+R + + + + + M LI AS+ + + V I LY +
Sbjct: 376 WRYQLETHHKFTQAISVFVMFLIGASMGA-IIKKGGFGLPVLIAIVFFIFLYVLTIAGDK 434
Query: 328 FGKSGILLPVAAALIPVILTISLSILILLQ 357
+ K G+L A + I+ +L++ +
Sbjct: 435 YAKDGLLWVPIGAWLANIVLFPFGLLLMQR 464
>gi|57168449|ref|ZP_00367583.1| probable integral membrane protein Cj0313 [Campylobacter coli
RM2228]
gi|57020257|gb|EAL56931.1| probable integral membrane protein Cj0313 [Campylobacter coli
RM2228]
Length = 352
Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 63/360 (17%), Positives = 125/360 (34%), Gaps = 24/360 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK L + IDL N + + N S+ LA +
Sbjct: 3 IFFRFISGIYLKNFFIIFLSLLGFYCGIDLLLNFNDLPDAANLSLLYVIFLAF----SAV 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI-WQLLNPFVVGSILLGIFTVLVINP 122
++P + ++ ++ R +E V A+G+S ++ PF+ ++ L P
Sbjct: 59 TYVLPVSLIFALVLSLVSMIRANEFVSLYALGLSKNLVIIFPFLWALFFCFVYVGLNFTP 118
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A D + NG K +++ +N FI K+ ++
Sbjct: 119 FA-----YANDYKRNILKNGTMLKQSGEVFLKFNNE----FIYISKVNNGQSTAQNIKIF 169
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV------VEYQYGRIPIDKNSTTLNIPIKMDG 236
I K + +A I LK+ EY+ G ++ + +
Sbjct: 170 NI-KDLNLSSFIEAKSGIFEKKNWILKEGNLTLLPKEYELGNKGLNISEFK-ELNTLEGF 227
Query: 237 FQKFSEQFASRSFYEIIKKMSFSN--KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
K E AS S Y I+ + K+ + Y L+ +P + LI
Sbjct: 228 KPKIIEGVASDSDYSILDILESLELFKTQNISIESLKISLYKLVFMPFFAPFLMLIMYYF 287
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+R + + + ++ ++ ++G++L ++P++L I L +
Sbjct: 288 FPVIARFFNLAFVAFVAFVVTLLTWGMLFLLSRLSENGVILSELGIVMPIVLLIFLGGFM 347
>gi|303235938|ref|ZP_07322541.1| permease, YjgP/YjgQ family [Prevotella disiens FB035-09AN]
gi|302483811|gb|EFL46803.1| permease, YjgP/YjgQ family [Prevotella disiens FB035-09AN]
Length = 650
Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/206 (16%), Positives = 73/206 (35%), Gaps = 12/206 (5%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM---GELPNYSISRGAVLA 55
M I L + K + + +M+++ + L + +++ G + L
Sbjct: 16 MFRIKKLDIFIAKQFGMLFAGTFVISMVVLMMQSLWKYVDKLVGKGLSIDVLAEFFGYLG 75
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
VP Q +P L+ +++ F NL +SEL +A GIS+ + +V + I
Sbjct: 76 LMFVP----QALPLAILLSSLITFGNLGESSELTAIKASGISLVKSFRGLIVIISFITIG 131
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+ N IA +K +I K + + + N + ++ E
Sbjct: 132 SFYFQNTIAPDAQKHIFQMILSMKQKSPELEIPEGIFY---NGIPQTNLYVERKNLETGH 188
Query: 176 WEDFTSITIDKKNKIIHRKDADLAII 201
+ + + AD ++
Sbjct: 189 LYNIMIYRMTDSYEDQAIILADSGML 214
>gi|54295469|ref|YP_127884.1| hypothetical protein lpl2555 [Legionella pneumophila str. Lens]
gi|53755301|emb|CAH16795.1| hypothetical protein lpl2555 [Legionella pneumophila str. Lens]
Length = 359
Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/365 (14%), Positives = 118/365 (32%), Gaps = 28/365 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K T + +++ + N+ + L +P ++
Sbjct: 2 IIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAAS-GSIPGFVIMKLLMLELPNLM 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + L SE+ + RA G QLL + ++ + +V+
Sbjct: 61 GLLLPLGFYIALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVVIWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ LI+ Q + I++ QQ ++ + +
Sbjct: 121 SPVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHS 180
Query: 184 IDKKNKIIHRKDADLAIIY------NDKVKLKKVVEYQ--YGRIP---IDKNSTTLNIPI 232
+ + AD A + + L+ EYQ G + S +P
Sbjct: 181 VQDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPN 240
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ +R + + H+ + + + I IPLM++ +TL+A
Sbjct: 241 PTVVMHDDARTAKTRDLWPLNN-----------HDLKKAAELQWRISIPLMVLTLTLVAV 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFM--LYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+S RS + ++ I F + + +G + + L
Sbjct: 290 PLSRVSPRSGKYSKLLPAIIIYIFYANFMFVSRDAIA---TGKIPWWIGMWWVHVAVAIL 346
Query: 351 SILIL 355
IL +
Sbjct: 347 GILFI 351
>gi|299147702|ref|ZP_07040765.1| putative permease [Bacteroides sp. 3_1_23]
gi|298513885|gb|EFI37771.1| putative permease [Bacteroides sp. 3_1_23]
Length = 638
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/240 (15%), Positives = 77/240 (32%), Gaps = 6/240 (2%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
+K+ L +G + I + + + EL + S A ++ +P
Sbjct: 17 IVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLVPVSLPL 76
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ +++ F N EL+ +A GIS+ +++ P L + N + +
Sbjct: 77 AVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQA 136
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
LI K + + + +D + K + + D + +
Sbjct: 137 KLGTLILSMKQKSPELDIPEGVFY---SEIKDYNLKVAKKNRKTGMLYDVLIYNMKDGFE 193
Query: 190 IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
H AD + K + G + + + +L + F E+ F
Sbjct: 194 NAHIIYADSGRLEMTADKQHLWLHLYSGDLFENLKAQSLKSQNVPYRRESFREKHTIIEF 253
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/98 (14%), Positives = 33/98 (33%), Gaps = 1/98 (1%)
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 362 KFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLVFI 420
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I + G + + L + +
Sbjct: 421 IYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGVFL 458
>gi|325578600|ref|ZP_08148700.1| inner membrane protein YjgP [Haemophilus parainfluenzae ATCC 33392]
gi|325159836|gb|EGC71966.1| inner membrane protein YjgP [Haemophilus parainfluenzae ATCC 33392]
Length = 363
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 59/362 (16%), Positives = 122/362 (33%), Gaps = 29/362 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + L +++ F L + L +P +
Sbjct: 2 ILTRYLTKEVFKSQIAILFILLLIFFSQQLVRVLGSAAN-GKVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+ +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVRVALILSLFTAGLAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ K N +M SN +FI + D
Sbjct: 121 SPWAIQKQAAIVEDAKANPTMGALTSGQFMSTSNNNFVLFI----DKINGNQISDVYLFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKK---VVEYQYGRIPIDKNSTTLNIPIKM 234
+ K + A+ + + + L+ V + +
Sbjct: 177 MKAKGQTKPSVVTAEKGELKALPNGDQVLNLQNTLRVEGTSVLPDFRITHFDDYQAYLGH 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
S++ A SF +++K S + K+ + ++ I + L + M LIA +
Sbjct: 237 QETNTESDEAAELSFEQLLKDKSSAAKA----------ELHWRITLILAVPLMALIAVPM 286
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP--VILTISLSI 352
S R + + + + + + + KS G +G L L+P I + L I
Sbjct: 287 SKVNPRQGRFAK-ILPALLLYLIYFLLQSSFKSAGGAGKLDAGL--LMPLVNIAFLILGI 343
Query: 353 LI 354
++
Sbjct: 344 VL 345
>gi|218692648|ref|YP_002400860.1| hypothetical protein ECED1_5114 [Escherichia coli ED1a]
gi|218430212|emb|CAR11213.2| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli ED1a]
gi|324005134|gb|EGB74353.1| putative inner membrane protein [Escherichia coli MS 57-2]
Length = 366
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/354 (16%), Positives = 126/354 (35%), Gaps = 13/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFI----ESVDGSDFKDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
I K AD + +L+ + T L ++ FQ +
Sbjct: 177 IRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + S ++ RA + + I + + M L+ +S+ R
Sbjct: 233 IIGHQAVALDPNDTDQMDMSTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 293 QGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|15888448|ref|NP_354129.1| hypothetical protein Atu1108 [Agrobacterium tumefaciens str. C58]
gi|15156140|gb|AAK86914.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 389
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 55/367 (14%), Positives = 130/367 (35%), Gaps = 28/367 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L Y + + L LL + +++ I + + N + + S A+ +P +
Sbjct: 2 KLLENYILRRTTQMFLVALLPVLAIIWTIQVLQRINLVTDTGQSMGSFMALATMI-LPTL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I ++PF ++ +F +N SEL I A G + P ++ + +L +F+ + N
Sbjct: 61 IPVVLPFALVIGITQIFTTMNNDSELAIIDAAGAPRSVMYRPVLILAAVLSLFSFTITNF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED-FTS 181
I ++ + + + I + + + + I + F +
Sbjct: 121 IEPPARNSARQMVAAAYADLLSSVIEEKTFRTIQDG-----LYVQIAQRQGRILKGLFVA 175
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D +I+ A +I L + P K S + D
Sbjct: 176 DRRDPNFDLIY--YAKEGMIDESGTSLTMRDGEVQQKTPDGKVSIVKFLSYAFDLSTMSE 233
Query: 242 EQFASRSFYEIIKKMSF------SNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+Q + S + F +N S ++ + + + + LI+ +++
Sbjct: 234 KQDSEPSLSPGDASLGFLLSPDENNASYKRSPETFRSELHKRLSDWMFAFSFALISLAIA 293
Query: 296 LEFSRSNQPRII--VAYGIFSGFM-----LYTIITIMKSFGKSGILLPVAAALIPVILTI 348
SRS++ + + + + FM Y + +S + + V A +P +
Sbjct: 294 A-DSRSHREARLHPMVAALVTAFMLRWLGFYVTNQVKQS---AAFIPLVYA--VPGLSGA 347
Query: 349 SLSILIL 355
+ + +++
Sbjct: 348 AAAFVLM 354
>gi|57237364|ref|YP_178377.1| hypothetical protein CJE0358 [Campylobacter jejuni RM1221]
gi|57166168|gb|AAW34947.1| membrane protein, putative [Campylobacter jejuni RM1221]
Length = 352
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 56/359 (15%), Positives = 121/359 (33%), Gaps = 22/359 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI-WQLLNPFVVGSILLGIFTVLVINP 122
++P + +V ++ R +E V A+G+S + +L PF+ I+ L
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNF-- 116
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ D + NG +++ +N F+ KI + ++
Sbjct: 117 ---TSFAYANDYKRNILKNGTIMNQSGEVFLKFNNN----FVYISKINNGQNSAQNIKIF 169
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQ--- 238
I+ N + A A + L+ + + + + ++ +
Sbjct: 170 NINDLN-LSSFVSAKNAYFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFK 228
Query: 239 -KFSEQFASRSFYEIIKKMSFSN--KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
K E AS S Y I + K+ + + Y + P + LI
Sbjct: 229 PKIIEGVASNSDYSISDALESFELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFF 288
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+R I+ M++ ++ ++ ++ ++ ++P+I+ LS +
Sbjct: 289 PVIARFFNLAIVTFMAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYM 347
>gi|253997951|ref|YP_003050014.1| permease [Methylovorus sp. SIP3-4]
gi|253984630|gb|ACT49487.1| permease YjgP/YjgQ family protein [Methylovorus sp. SIP3-4]
Length = 366
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/363 (12%), Positives = 133/363 (36%), Gaps = 30/363 (8%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATRVPLIIQ 64
R + + T + L +V + G L + +I+ + + +
Sbjct: 5 RSLLQELVGTAIGAFLVLFGIVIAQRVAYYIGVAAKGSLASDAINTLLGFSMLK---FLP 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I+ + ++ +R SE+V+ + G+ + + P + +I + ++ +
Sbjct: 62 MILSLTIFLAVLLTLTRWHRDSEMVVWFSSGMGLAGWIRPVLTFAIPVVAVIAVLSLFVT 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G + Q K + + + N + F+ + ++ ++ ++
Sbjct: 122 PWATNKGSEFRDQLKSRDELASISPGVFKESRNADRVFFV--ESFDELGNVVKNIFVQSV 179
Query: 185 DKKNKII------HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMD 235
+ + HR AD ++ + ++ Y+ + ++T +I I+ +
Sbjct: 180 QHQRLGVVVASQGHRTVADNG---DNFLVMEHGRRYEGKPNTAEFSTTEFERYSIRIEPN 236
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
++ A+ E++K HN + + + IP+ + L+A +S
Sbjct: 237 EVKEEPPGTAALGSVELLK----------NHNPANNAELQWRLAIPISAFLLVLLAIPLS 286
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+RS + ++ + + +++I++++ G L PV + + L+I +
Sbjct: 287 FVDNRSGRSANMML-ALLIYIIYNNMLSIVQAWLTQGKLNPVVGLWPVHVFFLLLTIWMF 345
Query: 356 LQK 358
++
Sbjct: 346 YRR 348
>gi|126739399|ref|ZP_01755092.1| hypothetical protein RSK20926_20820 [Roseobacter sp. SK209-2-6]
gi|126719499|gb|EBA16208.1| hypothetical protein RSK20926_20820 [Roseobacter sp. SK209-2-6]
Length = 376
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/308 (15%), Positives = 107/308 (34%), Gaps = 17/308 (5%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY YL +F L + + +V + +++ S A +P +I+
Sbjct: 5 DRYVLSQYLLFFGFFALILVAVFWVNRAVVLFDRLIG-DGQSALVFVEFTALTLPNLIRM 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P ++ V L SEL + RA G S WQ+ P +V ++ + + + +
Sbjct: 64 VLPVAVFASSVWVTNRLQSESELTVLRATGTSPWQMARPALVFGLVAALMMSALTHVLLP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ ++ N + ++ +P + I +KI + + + F S D
Sbjct: 124 ASISQLEIREREVSRNVTARLLTEGNFL---HPAKGITFYIRKIESDGTLKDVFLSDRRD 180
Query: 186 KKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDKNST-----TLNIPIKMDG 236
+ + + A + + + + ++ + ++T + +I
Sbjct: 181 PNSSVTY--TGSEAFLVRDGEKTHLIMVNGMAQRFTKDTRRLSTTNFSDFSYDISALARK 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
S + EI+ ++ + + + L+ V + LI S +
Sbjct: 239 SADRSRNIRAIPSLEILTAREQITNTDGYSAGALAEELHLRFARALVCVTVALIGFSALM 298
Query: 297 --EFSRSN 302
FSR
Sbjct: 299 LGTFSRFG 306
>gi|118474677|ref|YP_891476.1| permease YjgP/YjgQ [Campylobacter fetus subsp. fetus 82-40]
gi|118413903|gb|ABK82323.1| permease YjgP/YjgQ [Campylobacter fetus subsp. fetus 82-40]
Length = 353
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 55/353 (15%), Positives = 126/353 (35%), Gaps = 27/353 (7%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVV 78
YF++ M L + + + P + + L+ T + + ++P + IV
Sbjct: 15 YFIIIFMALELFYIGIDTLTNLKDFPKSANLQLIYLSLTALTAVNY-VLPISLVFALIVS 73
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
N+ R++ELV ++GIS L+ + S+++ + ++++ D +
Sbjct: 74 KINMIRSNELVSFYSLGISKNTLILSPFIISLIITCLYIY----LSSTSFAYARDYQKSL 129
Query: 139 KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADL 198
+ KS +++ N FI ++ P + II + A
Sbjct: 130 INFQGFNKSSNSIFLKYENK----FIYIDELYPAIGEANKIKIFE-TQDGDIIGQITAKK 184
Query: 199 AIIYNDKVKLKKVVEYQY---------GRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
A ++ KL V G I + + K + + ++ S
Sbjct: 185 AKFEDNSWKLFDVDIISLPPRLELNATGYIENTQKELLILSGFKPRTIENIYQTNSNYSI 244
Query: 250 YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA---ASVSLEFSRSNQPRI 306
+ I + + K+ + + ++ Y LI PL M LI ++ F +
Sbjct: 245 TDAIDSLR-TLKNEGINLNKIKSTLYSLIFFPLFAPLMVLILYYYLPITGRFF---NLAL 300
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP-VILTISLSILILLQK 358
+ ++ ++ ++ F +G+++P ++P +IL +
Sbjct: 301 ASFIYVIVTLCIWGVLFVLIRFSLNGVIIPEIGVILPIIILASFAGFKFYQHR 353
>gi|258405420|ref|YP_003198162.1| permease YjgP/YjgQ family protein [Desulfohalobium retbaense DSM
5692]
gi|257797647|gb|ACV68584.1| permease YjgP/YjgQ family protein [Desulfohalobium retbaense DSM
5692]
Length = 395
Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 61/377 (16%), Positives = 131/377 (34%), Gaps = 31/377 (8%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+P L R FK L LG+ + + ++ ++ + ++ L P
Sbjct: 2 LPRRLSREIFKE-LVYVFSLCLGSFLALLLVGRLLKLRELFLSQDVALLDLGQLFLYLSP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++P +++ + F ++ ELV RA G+S+WQLL ++ +L + +
Sbjct: 61 FFLLLLLPIASMLSVFLTFLRMSTDRELVALRAAGLSLWQLLPVTLLFLLLCTAANIGIG 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ G I + + Q + I A+++ E
Sbjct: 121 IYGVSWGMDNFRATILDMAKTRTQLVLQPGVFNQDFPG---LTIFARQVDRETGDLSTV- 176
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVK------LKKVVEYQYGRIPIDK-NSTTLNIPIK 233
+ + + A + D K L+ Y++ R I +
Sbjct: 177 FVEDTSRGQGAIGIVAPQGSLTTDTRKGQVVFSLRNGRLYRHDRDSASVLGFGEYRIALD 236
Query: 234 MDGF-------QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM--- 283
+D +K ++ + + + + + + + + + + + +PL
Sbjct: 237 LDKIISGVELEEKRPKEMSWTRLMDYRHQADLAQTRDATFDRKVDVETHKRLALPLACLA 296
Query: 284 --LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ AM L A++ R +V+ G+F + Y + + S G++G L P
Sbjct: 297 LGIFAMPL--AALFEGLKR--HFGFLVSLGLFL--VYYALFSAGLSLGETGTLAPAIGLW 350
Query: 342 IPVILTISLSILILLQK 358
P IL + L IL
Sbjct: 351 APNILFMGLG-GILFHM 366
>gi|315922632|ref|ZP_07918872.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313696507|gb|EFS33342.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 632
Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/240 (15%), Positives = 77/240 (32%), Gaps = 6/240 (2%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
+K+ L +G + I + + + EL + S A ++ +P
Sbjct: 11 IVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLVPVSLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ +++ F N EL+ +A GIS+ +++ P L + N + +
Sbjct: 71 AVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQA 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
LI K + + + +D + K + + D + +
Sbjct: 131 KLGTLILSMKQKSPELDIPEGVFY---SEIKDYNLKVAKKNRKTGMLYDVLIYNMKDGFE 187
Query: 190 IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
H AD + K + G + + + +L + F E+ F
Sbjct: 188 NAHIIYADSGRLEMTADKQHLWLHLYSGDLFENLKAQSLKSQNVPYRRESFREKHTIIEF 247
Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/98 (14%), Positives = 33/98 (33%), Gaps = 1/98 (1%)
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 356 KFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLVFI 414
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I + G + + L + +
Sbjct: 415 IYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGVFL 452
>gi|85716329|ref|ZP_01047302.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
gi|85696845|gb|EAQ34730.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
Length = 390
Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/341 (12%), Positives = 111/341 (32%), Gaps = 32/341 (9%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G + RY F+ L + + L+ ++++ + M +I + + +P++
Sbjct: 2 GSIDRYIFRTTLASFVVVLVSLTGVIWITQALRGIDLMTS-QGQTILTFLGITSLAIPVL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I P ++ L SE+++ A G+S ++L PF+ ++++ + +
Sbjct: 61 VLIISPIALMIAISHTLHKLATDSEIIVMNAAGLSPFRLFRPFIYATVIVALLVAFIAAY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A G + + + + + ++ I ++ P + I
Sbjct: 121 LAPDGMRRLKRWDAEITADVLANVLQPG---RFAQLDPNLTIRIRERQPGGQLA----GI 173
Query: 183 TIDKKNKIIHR--KDADLAI-----------IYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
ID + R AD + + L++ + + + +
Sbjct: 174 FIDDRRNSDERLSIIADHGTVMKNDKGSFLVLEDG--HLERFETGKREPAMVAFDRYAFD 231
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP-----LML 284
+ + R +E+I ++ + + + P
Sbjct: 232 MSKFSNRGHDVVYGIRERYLWELI-VPDQNDPVVQQLQGQFRAELHDRFTAPIYPFVFAA 290
Query: 285 VAMTLIAASVSLEFSR--SNQPRIIVAYGI-FSGFMLYTII 322
+ + + SR S I +G+ +GF L +
Sbjct: 291 LTFAFLGTPRTTRQSRNFSMGAAIAAVFGLRMAGFALSVMT 331
>gi|329894348|ref|ZP_08270218.1| putative permease [gamma proteobacterium IMCC3088]
gi|328923144|gb|EGG30467.1| putative permease [gamma proteobacterium IMCC3088]
Length = 372
Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/329 (13%), Positives = 107/329 (32%), Gaps = 29/329 (8%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + L T L ++VF + E + + A + +P ++ I
Sbjct: 5 RYLTRDILVNTSAVSLVVFLVVFSSQFVRRLADVAE-GDLAAGFLASIMFFSIPSYLELI 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P V ++ L SE+V+ A GI W LL +V ++ I + + +
Sbjct: 64 LPLGFFVGLMLALGRLYTDSEMVVLSASGIGPWHLLRWVLVSGAVVAILSAGLSLGLTPW 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS----- 181
+ ++L+ + + K + +P A+ + + +
Sbjct: 124 TKTKVLNLVTEASNE--KGLAAFVPGRFQRRSGGFDTFYAESVESDQQGLKGLFVAEQGM 181
Query: 182 ---------ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
IT ++ +++ ++ ++L YQ ++ T +
Sbjct: 182 SSAGEPLVTITYAERGRVVSSQE-----HGGRYLELLNGRRYQGQPGQLEYRVTEFEVLG 236
Query: 233 KMDGFQKFSEQFASRSFYE-IIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + Y+ + +M F + ++ ++ + + LM + +A
Sbjct: 237 ERLPDADSAGSAFGDDLYDALPTQMLFLDNNSASTAT-----LHWRLSLVLMPFNLAFLA 291
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
++ R ++ I +
Sbjct: 292 LGLA-RTDRRRGRYTMLLPAIVLYLVYLV 319
>gi|153951775|ref|YP_001398642.1| hypothetical protein JJD26997_1652 [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939221|gb|ABS43962.1| putative membrane protein [Campylobacter jejuni subsp. doylei
269.97]
Length = 352
Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 55/359 (15%), Positives = 119/359 (33%), Gaps = 22/359 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI-WQLLNPFVVGSILLGIFTVLVINP 122
++P + +V ++ R +E V A+G+S + +L PF+ I+ L
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSFYALGLSRNYVILFPFLWALFFCCIYIGLNF-- 116
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ D + NG +++ +N F+ KI + ++
Sbjct: 117 ---TSFAYANDYKRNILKNGTIMNQSGEVFLKFNNN----FVYISKINNGQNSAQNIKIF 169
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQ--- 238
I+ + A A + L+ + + + + ++ +
Sbjct: 170 NIN-DFNLSSFVSAKNAHFEGESWILRDGNIALLPKNYELANDGLKIQDFSELKSLEGFK 228
Query: 239 -KFSEQFASRSFYEIIKKMSFSN--KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
K E AS S Y I + K+ + + Y I P + LI
Sbjct: 229 PKIIEGVASNSDYSISDALESFELFKAQNVNTDALKINLYKFIFTPFFAPFLMLIMYYFF 288
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+R + M++ ++ ++ ++ ++ ++P+I+ LS +
Sbjct: 289 PVIARFFNLAFVTFIAFVVILMVWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYM 347
>gi|110680306|ref|YP_683313.1| hypothetical protein RD1_3119 [Roseobacter denitrificans OCh 114]
gi|109456422|gb|ABG32627.1| membrane protein, putative [Roseobacter denitrificans OCh 114]
Length = 375
Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/316 (13%), Positives = 104/316 (32%), Gaps = 31/316 (9%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L +F L + ++++ + +++ S A +P +I
Sbjct: 4 LDRYMLSQLLVLFGFFALVLVAILWINRGVSLFDELIS-DGQSALVFLEFTALGLPKLIT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P T + V +N SEL + +A G +L P +V +++ + ++ + +
Sbjct: 63 TVLPIATFAAAVYVTNRMNNESELTVLQATGSGPVRLARPVLVFGLIVFLMASMLHHVLM 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ-------------ISNPQQDIFIGAKKILP 171
++ + N + ++ +D+F+ ++ +
Sbjct: 123 PLAQQQLGHRQNEIAQNATSRLLTEGRFLHPSEGVTFYTQEIDDDGVLRDVFLSDRRSVE 182
Query: 172 ENHIWEDFTSITIDKKNKIIHR-KDADLAIIYNDKVKL--KKVVEYQYGRIPIDKNSTTL 228
E I+ + I + D + +L ++ + + +N +
Sbjct: 183 EGVIYTAAHAYLIRDDERTSLIMVDGLAQRLTTATDRLATANFRDFSFDISALVQNDVSQ 242
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ ++ + ++S + + F+ I PL +
Sbjct: 243 RL---------DPDKMTTFQLLTPWDELS---RETGRSIGKITQSFHARIADPLFCIVAA 290
Query: 289 LIAASVSL--EFSRSN 302
LI S + FSR
Sbjct: 291 LIGFSTLMIGGFSRFG 306
>gi|301156462|emb|CBW15933.1| conserved inner membrane protein [Haemophilus parainfluenzae T3T1]
Length = 363
Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 50/314 (15%), Positives = 103/314 (32%), Gaps = 24/314 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + L +++ F L + L +P +
Sbjct: 2 ILTRYLTKEVFKSQIAILFILLLIFFSQQLVRVLGSAAN-GKVPADLVFSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+ +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVRVALILSLFTAGLAAYNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ K N +M SN +FI + D
Sbjct: 121 SPWAIQKQAAIVEDAKANPTMGALASGQFMSTSNNNFVLFI----DKINGNQISDVYLFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKK---VVEYQYGRIPIDKNSTTLNIPIKM 234
+ K + A+ + + + L+ V + +
Sbjct: 177 MKAKGQTKPSVVTAEKGELKALPNGDQVLNLQNTLRVEGTSVLPDFRITHFDDYQAYLGH 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
S++ A SF +++K S + K+ + ++ I + L + M LIA +
Sbjct: 237 QETNSESDEAAELSFEQLLKDKSAAAKA----------ELHWRITLILAVPLMALIAVPM 286
Query: 295 SLEFSRSNQPRIIV 308
S R + I+
Sbjct: 287 SKVNPRQGRFAKIL 300
>gi|294645356|ref|ZP_06723067.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
gi|292639294|gb|EFF57601.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
Length = 616
Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 77/234 (32%), Gaps = 5/234 (2%)
Query: 18 LYFLLGAMILVFVIDLNEIQNQMGELPNYSI--SRGAVLAATRVPLIIQQIIPFITLVVN 75
+ F+ I +F+ + + + EL + S A ++ +P L+ +
Sbjct: 1 MLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLVPVSLPLAVLLAS 60
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
++ F N EL+ +A GIS+ +++ P L + N + + LI
Sbjct: 61 LITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQAKLGTLI 120
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKD 195
K + + + +D + K + + D ++ +
Sbjct: 121 LSMKQKSPELDIPEGVFY---SEIKDYNLKVAKKNRKTGMLYDVLIYSMKDGFEKARIIY 177
Query: 196 ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
AD + K + G + + + ++ ++F E+ F
Sbjct: 178 ADSGRLEMTADKQHLWLHLYSGDLFENLKAQSMKSENVPYRREEFREKHTIIEF 231
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 1/98 (1%)
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 340 KFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLVFI 398
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I + G + + L I +
Sbjct: 399 IYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGIFL 436
>gi|330827962|ref|YP_004390914.1| putative permease [Aeromonas veronii B565]
gi|328803098|gb|AEB48297.1| Predicted permease [Aeromonas veronii B565]
Length = 362
Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/300 (13%), Positives = 100/300 (33%), Gaps = 5/300 (1%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
F+ LKT L L +++ +I + + L +P + ++P
Sbjct: 1 MFRETLKTQLAVLFVLLLIFVSQQFIKIIGDAAD-GEVPTRLVSTLLLLNLPNMALLMLP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ + L SE+ + A+G S ++ ++ ++L + IA +
Sbjct: 60 ISLFLAILFAHGRLYAESEMTVMHAVGFSHRFVMRSAMLLALLTAVVAAFNTGWIAPQAK 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ +I ++K + +M + + + + + + + N
Sbjct: 120 EREYQVIDEFKADPGISFLQAGRFM--DLDKGRLVAYIQDLNDNGSKLQKIFVLQRAEGN 177
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
A ++ D+ L+ + R + + I + +Q RS
Sbjct: 178 NPPSVVVATEGVVTVDENGLQWLTLMDGSRYEGNFSGKQFQISDFREYGLVIRQQEMERS 237
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+ K + + AE Q+ I +PL + +TL+ ++ R + ++
Sbjct: 238 NRKAAAKPTMELFGTQDNAMMAELQW--RISLPLSIPVLTLLVVPLARVNPRQGRYAKLL 295
>gi|283955738|ref|ZP_06373229.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni 1336]
gi|283792693|gb|EFC31471.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni 1336]
Length = 352
Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 56/359 (15%), Positives = 121/359 (33%), Gaps = 22/359 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI-WQLLNPFVVGSILLGIFTVLVINP 122
++P + +V ++ R +E V A+G+S + +L PF+ ++ L
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCVYIGLNF-- 116
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ D + NG +++ +N F+ KI + ++
Sbjct: 117 ---TSFAYANDYKRNILKNGTIMNQSGEVFLKFNNN----FVYISKINNGQNSAQNIKIF 169
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQ--- 238
I+ N + A A + L+ + + + + ++ +
Sbjct: 170 NINDLN-LSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFK 228
Query: 239 -KFSEQFASRSFYEIIKKMSFSN--KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
K E AS S Y I + K+ + + Y + P + LI
Sbjct: 229 PKIIEGVASNSDYSISDALESFELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFF 288
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+R I+ M++ I+ ++ ++ ++ ++P+I+ LS +
Sbjct: 289 PVIARFFNLAIVTFIAFVVTLMIWGILFLLTRLSENSVIASEIGIVVPIIILGCLSAYM 347
>gi|49474101|ref|YP_032143.1| hypothetical protein BQ04630 [Bartonella quintana str. Toulouse]
gi|49239605|emb|CAF25962.1| hypothetical protein BQ04630 [Bartonella quintana str. Toulouse]
Length = 396
Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 54/367 (14%), Positives = 126/367 (34%), Gaps = 27/367 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ Y K L ++ A+ + + + + N + ++ + + VP +I
Sbjct: 3 IIELYILKRILILFSAVMIAAISISWTVQILARINFLTT-SRQTLLTVLQFSLSLVPSVI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IPF ++ +N+ SEL I A G + P ++ +++ + L+ N +
Sbjct: 62 FLVIPFALVIAITSTLSAMNQDSELAIISAAGFPKSTVWKPILLLALIASCASFLIANFV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A ++ + + + +++N +++I + P+ + F +
Sbjct: 122 APQARFHMRQMLANAHSDLINLFINEGSFQKLAN---NLYIEIGERNPDGTLGRLFIADQ 178
Query: 184 IDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGR---------IPIDKNSTTLNI 230
D K + A A I + + L + S + I
Sbjct: 179 RDPKIDFFY--YATKASIVSNKSGNFLVLNNGEIERINHQNDSVSIVQFSFYTFSLSEFI 236
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P ++ S K + + + +F+ + L + +LI
Sbjct: 237 PNDKTPTIYPKDRPLSYLLNPDPKDPYYQRR-----PLQYRAEFHRRLTEWLYSIVFSLI 291
Query: 291 AASVSLEFSRSNQPRIIVA--YGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
A + + +RS + A I ++Y I KS + + P+ ++I
Sbjct: 292 ALAAA-RDARSYRKTRNFANFSAIAFSLLVYWIGHFFAEKAKSDLAYVPLLYITPIGVSI 350
Query: 349 SLSILIL 355
+ ++L
Sbjct: 351 LVFFMLL 357
>gi|319408320|emb|CBI81973.1| conserved membrane hypothetical protein [Bartonella schoenbuchensis
R1]
Length = 396
Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 58/340 (17%), Positives = 121/340 (35%), Gaps = 30/340 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ Y K ++ A+ + + + + + + ++ VP +I
Sbjct: 3 IIELYILKRVFILFSAVMVAAIGISLTVQVLARIDFLTT-SGQTFLTVLYFSSLLVPPVI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
IIPF ++ + +N+ SEL I A G S +L P ++ +I + + N +
Sbjct: 62 SLIIPFALVIAITTILSTMNQDSELAIISASGFSKNTVLKPILLLAIFTACTSFSIANFV 121
Query: 124 ATSG--------EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
A DLI + G Q +++I D IG ++ +
Sbjct: 122 APQARLNMRQMLANTHSDLINLFIREGSFQALTNNLYIEIGERYPDGTIG--RLFIADQR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKM 234
+ KK I+ K+ + ++ + +++ YQ + I K NS T ++
Sbjct: 180 DSKIDLLYYAKKGAIVSNKNGNFLVLNDGEIERVN---YQNDSVSIIKFNSYTFSLS--- 233
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNY------RAETQFYFLIVIPLMLVAMT 288
+F + Y + +S+ + + Y + + +F+ + L +
Sbjct: 234 ----EFIPNNGVPTIYPKDRPLSYLLHPDPYDPYYQRNPLQYKAEFHRRLTEWLYPIVFA 289
Query: 289 LIAASVS--LEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
LIA + + R IV FS + + +
Sbjct: 290 LIAVAAAGDARSHRQAHTSAIVFTITFSLLIYWIEYFFAE 329
>gi|114331100|ref|YP_747322.1| permease YjgP/YjgQ family protein [Nitrosomonas eutropha C91]
gi|114308114|gb|ABI59357.1| permease YjgP/YjgQ family protein [Nitrosomonas eutropha C91]
Length = 357
Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/351 (11%), Positives = 117/351 (33%), Gaps = 32/351 (9%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAA--TRVP 60
GI+ RY + L L F + +IL+ + + + ++ A+ +
Sbjct: 2 GIIERYISRELL---LPFFVVTIILIGLFVSFSVARFLTGAVAETLGAIAMFKLVGLKTI 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++ ++P V I +NR E+ + R++G Q++ + ++ + + + ++
Sbjct: 59 IALEVLVPIAFYVAVIHGLSRMNRDQEINVLRSVGYGDNQIIRTVFIIALPIAVLSGVLS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF- 179
+ Q + + + + + + I + E
Sbjct: 119 IYARPWAYAESYVMNAQAEAELNTDRFQPGRFY--GSEKSGRVIFIRGKDDLEKRMEGIF 176
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKV---KLKKVVEYQYG----RIPIDKNSTTLNIPI 232
I + +II ++ + ++ +L Y+ G R + +
Sbjct: 177 HYIRTAENREIIVSREGYQQPMTQEQWPYIELLDGKIYRLGYDAARDSTVQFEKMIYFNE 236
Query: 233 KMDGFQKFSEQFASRSFY--EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ +++S + E ++++ + + + P + + LI
Sbjct: 237 NDQAQNYRRKAASTQSLWNSEQPQEIA---------------ELQWRLSRPAATILLALI 281
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
A S + R ++ + Y + + K++ + G++ V
Sbjct: 282 AVSFTRTAPRKDKADRTFIVAALVFAVYYNLSGLAKTWVEQGVVAAVPGIW 332
>gi|15602061|ref|NP_245133.1| hypothetical protein PM0196 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12720419|gb|AAK02280.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 368
Score = 77.2 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 48/314 (15%), Positives = 110/314 (35%), Gaps = 24/314 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K LK+ L L +++ F L + L +P +
Sbjct: 2 ILTRYLTKEVLKSQLAILFILLLIFFCQQLVRVLGSAAS-GKVPADLVMSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+ + +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQKILVRVVLILSLFTASIAAYNVFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++++ K N ++ +N + +FI +++ D
Sbjct: 121 TPWAIQKQSEILEGAKANPTMGALASGQFINTNNNEFVLFI----DSIKDNTIHDVYVFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKM 234
++ + A+ + + +KL+ + D T +
Sbjct: 177 TRERGNLKPSVLVAEKGELQALPNGDQILKLENSQRVEGSSAFPDFRITHFEEYQAYLGY 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
++ F++++K + + K+ + N+R ++ +PL M LIA +
Sbjct: 237 QDKNNDEQETEELGFWDLMKTHTPAAKAEL--NWRLSL----ILAVPL----MALIAVPL 286
Query: 295 SLEFSRSNQPRIIV 308
S R + ++
Sbjct: 287 SRVNPRQGRFAKVL 300
>gi|167645643|ref|YP_001683306.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
gi|167348073|gb|ABZ70808.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
Length = 409
Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 55/364 (15%), Positives = 125/364 (34%), Gaps = 19/364 (5%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ Y + + + L G ++ +++ + + LAA VP
Sbjct: 14 FRLIDAYLLRLLVWPIVGCL-GVTVIALLLERVLRLLDVLSQSSARFGYVTSLAANLVPH 72
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P V +V L+ SE+ A G S+ ++ PFV + L +F+++V
Sbjct: 73 YLGLALPVAFFVALFIVITKLSDGSEIDALLASGQSLTRIAAPFVSVGVFLMVFSLIVFG 132
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ + + G K + ++ + + + A +
Sbjct: 133 YMQPYSRYAYRAVMHEAINAGWNGKLNGGSFI----DEPKLLMTADDADAAGQQLKRVFI 188
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKV------KLKK----VVEYQYGRIPIDKNSTTLNIP 231
+D A A + D L+ V+ + + + T +P
Sbjct: 189 RRLDVNGN-EEVITAATADLRADHDAKSVTMLLRNGQRIGVDARGAYRTLMFDQLTTQVP 247
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN-IFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ + R + + +N N + + Y + L L + L+
Sbjct: 248 LAGAAALLRARGGDEREL-TLGELARQANTPNSVVPRATLLAELYGRLARALFLPFLPLL 306
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A + L R N+ ++ G+ + + +S +SG +P+AA P ++ L
Sbjct: 307 AFPLGLAAKRGNRTPGLIIAGVLL-LAFQHSLQLGQSLAESGKAMPLAAIGTPWLIFTGL 365
Query: 351 SILI 354
S+ +
Sbjct: 366 SLWM 369
>gi|74314740|ref|YP_313159.1| hypothetical protein SSON_4446 [Shigella sonnei Ss046]
gi|254037284|ref|ZP_04871361.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
gi|300916357|ref|ZP_07133099.1| putative inner membrane protein [Escherichia coli MS 115-1]
gi|300935933|ref|ZP_07150886.1| putative inner membrane protein [Escherichia coli MS 21-1]
gi|73858217|gb|AAZ90924.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|226840390|gb|EEH72392.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
gi|284924431|emb|CBG37556.1| putative permease [Escherichia coli 042]
gi|300416317|gb|EFJ99627.1| putative inner membrane protein [Escherichia coli MS 115-1]
gi|300458869|gb|EFK22362.1| putative inner membrane protein [Escherichia coli MS 21-1]
Length = 366
Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 57/354 (16%), Positives = 125/354 (35%), Gaps = 13/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFI----ESVDGSDFKDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
I K AD + +L+ + T L ++ FQ +
Sbjct: 177 IRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + ++ RA + + I + + M L+ +S+ R
Sbjct: 233 IIGHQAVVLDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 293 QGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|320101899|ref|YP_004177490.1| permease YjgP/YjgQ family protein [Isosphaera pallida ATCC 43644]
gi|319749181|gb|ADV60941.1| permease YjgP/YjgQ family protein [Isosphaera pallida ATCC 43644]
Length = 507
Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 4/134 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
GIL RY + L + LL ++ + + + G + + +A +P
Sbjct: 4 IGILQRYVIRQLLGSFALALLAISSIIVLFLVMAEAAKAG----LGLDQIVQIAPYLIPG 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P L VV+ L +E+ +A G+S+W +L P ++ SI+L L +
Sbjct: 60 TLPYTVPVALLFSVTVVYGRLAGDNEITAVKAAGLSVWTVLWPCILLSIVLSGALYLAAS 119
Query: 122 PIATSGEKIGIDLI 135
+ +I
Sbjct: 120 HVIPEANHAVKRVI 133
Score = 41.8 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 40/91 (43%)
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
+++ + ET+ I + L+ A V + F++ + + + + Y + +
Sbjct: 411 YYDRKLETEKQMRIALSCGPFFFALLGAPVGILFAKRDYLSAFITCFLPIILIYYPLTLL 470
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ GK G+L P+ A + + L+ L+L
Sbjct: 471 GINLGKEGVLDPMIALWMGNLTLSVLAGLVL 501
>gi|86151428|ref|ZP_01069643.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
260.94]
gi|86153749|ref|ZP_01071952.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|315123881|ref|YP_004065885.1| hypothetical protein ICDCCJ07001_285 [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|85841775|gb|EAQ59022.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
260.94]
gi|85842710|gb|EAQ59922.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|307747250|gb|ADN90520.1| Putative membrane protein [Campylobacter jejuni subsp. jejuni M1]
gi|315017603|gb|ADT65696.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 352
Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 56/359 (15%), Positives = 120/359 (33%), Gaps = 22/359 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI-WQLLNPFVVGSILLGIFTVLVINP 122
++P + +V ++ R +E V A+G+S + +L PF+ I+ L
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNF-- 116
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ D + NG +++ +N F+ KI + ++
Sbjct: 117 ---TSFAYANDYKRNILKNGTIMNQSGEVFLKFNNN----FVYISKINNGQNSAQNIKIF 169
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQ--- 238
I+ N + A A + L+ + + + L ++ +
Sbjct: 170 NINDLN-LSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKLQDFSELKSLEGFK 228
Query: 239 -KFSEQFASRSFYEIIKKMSFSN--KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
K E AS S Y I + K+ + + Y + P + LI
Sbjct: 229 PKIIEGVASNSDYSISDALESFELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFF 288
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+R + M++ ++ ++ ++ ++ ++P+I+ LS +
Sbjct: 289 PVIARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYM 347
>gi|256829583|ref|YP_003158311.1| permease YjgP/YjgQ family protein [Desulfomicrobium baculatum DSM
4028]
gi|256578759|gb|ACU89895.1| permease YjgP/YjgQ family protein [Desulfomicrobium baculatum DSM
4028]
Length = 392
Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 41/323 (12%), Positives = 107/323 (33%), Gaps = 25/323 (7%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
+ L P + +IP ++ + F + EL+ RA G+S+W LL
Sbjct: 46 GVTFFDLVKLFTYLSPFFLIMLIPVSCMLGVFLTFLRMGADRELISLRAGGVSLWPLLPA 105
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
++ +L TV + + G + + + N + + + +
Sbjct: 106 PLLLCLLCSALTVWISLSGISWGMDNFRNTVVELARNKTSVNVQPGVF---NTSFPGLTV 162
Query: 165 GAKKILPENHIWEDFTSITIDKKNK------IIHRKDADLA------IIYNDKVKLKKVV 212
A++ P + D + + + R ++D + + V ++
Sbjct: 163 YARQSDPGSGALLDVFVLDSSRSKTRATIVAPLGRIESDSERGQVFVRLEDGHVYREQGG 222
Query: 213 EYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNK--SNIFHNYRA 270
E I + +L++ + GF+ + S ++ ++ + ++ R
Sbjct: 223 ELSV--ISFESYILSLDMTRLLGGFELKDKAPKEMS-WDDLRTLKGDGFEDRSVNFQRRV 279
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSG--FMLYTIITIMKSF 328
+ + + +P + + + G F+ Y ++ +
Sbjct: 280 DIELHKRFSLPAACIV---LGFFALPLAFFFQGMKRQFGLIACLGTFFLYYVFLSGGMAL 336
Query: 329 GKSGILLPVAAALIPVILTISLS 351
+ GI+ P A +P ++ + +
Sbjct: 337 AEGGIIAPALALWLPNVVFMLAA 359
>gi|77463457|ref|YP_352961.1| permease [Rhodobacter sphaeroides 2.4.1]
gi|77387875|gb|ABA79060.1| Predicted permease [Rhodobacter sphaeroides 2.4.1]
Length = 376
Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 56/370 (15%), Positives = 130/370 (35%), Gaps = 40/370 (10%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRG------AVLAATRVPLII 63
F YL + L L G LV V L N+ L + IS G + +P +I
Sbjct: 4 FDRYLLSQLVALFGFFSLVLV--LVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNVI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ ++P I V L++ SELV+ +A G S ++L P + +++ + ++++N +
Sbjct: 62 RLVLPLSAFAATIYVVNRLSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNLL 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQ----------KSDIIPWMQISNPQQ---DIFIGAKKIL 170
+ + N + + +++ D+ + +
Sbjct: 122 VPASRATLSARSAEISQNATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRDP 181
Query: 171 PENHIWEDFTSITIDKKNKIIHR-KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
+ + ++ + D + + +L+ ++ + D +
Sbjct: 182 ARSTAYTARRALLVRTDTTPKLLMIDGSAQTLTREGRRLE---LTRFDDVTYDLGAFMTG 238
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
K ++ E++++ + + ++ + I P + A +L
Sbjct: 239 SGPKRRVLEELPTMTLLAPTAEVLEETRSTRAAALYEG-------HSRIGQPFLGFASSL 291
Query: 290 IA-ASVSLE-FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG--ILLPVAAALIPVI 345
I A++ L FSR + + + ++ TI G + + AA +
Sbjct: 292 IGFAALLLGSFSRFG-LWWQILFAVLLLIVVQTINVAASGVGVTDEQLWPLAYAA---PV 347
Query: 346 LTISLSILIL 355
++ IL+L
Sbjct: 348 TGFAIGILLL 357
>gi|253572213|ref|ZP_04849617.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298387973|ref|ZP_06997521.1| permease [Bacteroides sp. 1_1_14]
gi|251838393|gb|EES66480.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298259239|gb|EFI02115.1| permease [Bacteroides sp. 1_1_14]
Length = 632
Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/240 (14%), Positives = 75/240 (31%), Gaps = 6/240 (2%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
+K+ L +G + I + + + EL + S A ++ +P
Sbjct: 11 IVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLDMSVIAQFFFYSALTLVPISLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ +++ F N EL+ +A GIS+ +++ P L + N + +
Sbjct: 71 AILLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVAVSFYFQNVVGPIAQT 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
LI K + + + K + + D + +
Sbjct: 131 KLYTLIISMKQKSPELDIPEGVFYSEIPDYN---LKIAKKNRKTGMMYDVLIYNLKDGFE 187
Query: 190 IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
H AD + K + G + + S ++ ++F E+ F
Sbjct: 188 NAHIIYADSGRMEMTADKQHLWLHLYSGDLFENLRSQSMKSQNVPYRREEFREKHTIIEF 247
Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 1/102 (0%)
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
I S++ S+ + + E +++ I I L + I A + R + V +
Sbjct: 352 INFKSYTMGSHDYSMRKHEIEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSV 410
Query: 313 FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I + G + + L +
Sbjct: 411 MVFIIYYIIDNTGYKMARDGRWVVWMGVWTSSAVLAPLGAFL 452
>gi|259419313|ref|ZP_05743230.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
gi|259345535|gb|EEW57389.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
Length = 379
Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 49/359 (13%), Positives = 121/359 (33%), Gaps = 15/359 (4%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY YL +F L + + ++ + + + S+ ++A +P +++
Sbjct: 5 DRYVLSQYLLFFGFFALILVAVFWINRAVSLFDWLIG-DGQSVLAFLEISALSLPNLVRM 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P + V LN SEL + RA G S WQL P + +L + +
Sbjct: 64 VLPLAAFAATVWVTNRLNSESELTVLRATGSSPWQLARPAMAFGVLSAAMMSALSLFLLP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ + + + + ++ +P I I P+ + F + D
Sbjct: 124 ASLAQMQLREAELSRSVSAKLLNAGNFL---HPSAGITFFVGSIDPDGTLNNVFLTDQRD 180
Query: 186 KKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+I + D + +D + L + + ++T G +
Sbjct: 181 PSVEITYTSDRAYLVREDDMAHLILVDGLAQRKEAHNDRLSTTAFADFSYPLGDLSPART 240
Query: 244 FASRSFY-----EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL-- 296
+R ++++ ++ + + + A+ +I S L
Sbjct: 241 MGARPLRNIPTLDLLRDRDEITQNEGHSAGAQAEELHLRFARAAVTFAVVMIGVSTLLLG 300
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
FSR + ++ + + + + + + P+ +P + + +S++ L
Sbjct: 301 GFSRFGIWKQVLVAFVLLILIEGMRGVVSEPVRDNAQMWPLI--YLPAAIGVLISMIFL 357
>gi|312959168|ref|ZP_07773687.1| permease YjgP/YjgQ [Pseudomonas fluorescens WH6]
gi|311286938|gb|EFQ65500.1| permease YjgP/YjgQ [Pseudomonas fluorescens WH6]
Length = 372
Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 49/361 (13%), Positives = 123/361 (34%), Gaps = 20/361 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++++ + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAAS-GALDPGSLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL ++ + + + + +
Sbjct: 61 QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMIPAAGVALVMAWLSLSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A G L+ + + + + P + + + +
Sbjct: 121 APQGAMQFQLLLNKQ--DAMTEFDTLEPGRFQALNDGTRVTYTETMTDDRANLGGVFISQ 178
Query: 184 ----IDKKNKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
++K++ I AD + + L+ Y D + + M
Sbjct: 179 KNQGENQKDRGISILVADSGRQEVRPDGSRYLVLENGYRYDGSPGLADYRAIKYDTYGVM 238
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
SE+ R + F ++ R+ + + I +PL++ +TL+A +
Sbjct: 239 LARPDISEEVTDRD--ALPTASLFGSQ-----ELRSIAELQWRISLPLLVFIVTLMAVPL 291
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S + + + I T++T + + ++G V + +++ + +
Sbjct: 292 S-RVNPRQGRFLKLLPAILLYMTYLTLLTYARGWLENGKTPLVLGLWWVHAIFLTVGLAL 350
Query: 355 L 355
L
Sbjct: 351 L 351
>gi|317060239|ref|ZP_07924724.1| conserved hypothetical protein [Fusobacterium sp. D12]
gi|313685915|gb|EFS22750.1| conserved hypothetical protein [Fusobacterium sp. D12]
Length = 265
Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/266 (12%), Positives = 84/266 (31%), Gaps = 15/266 (5%)
Query: 98 IWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN 157
I +L P + F + + I L + + +M N
Sbjct: 3 IRAILKPILYLGFASMFFILFLQESIIPRSYIKLQYLSSKIAYENPVFQLKERTFM---N 59
Query: 158 PQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG 217
++ + K+ + H + DKK+ A + + L+K +
Sbjct: 60 NLENYSLYIDKVGRDKHA-KGILIFENDKKSTFPVVLVGHEAYWRDSSIVLEKANFISFD 118
Query: 218 RIPIDK-----NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET 272
+ K + + + ++ S ++++M K +
Sbjct: 119 EKGVRKLTGSFEDKRVELQAYFSDLKIKVKETEMMSIATLLQEMKGKTKEE---KLIYKV 175
Query: 273 QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG 332
+ + + +P V ++++ +S+ RS + + GI + F +++ I G
Sbjct: 176 EIHRKLALPFSSVMLSMLGVFLSIGHQRSGKKA-GILVGILTIFFYISLLNIGIVLANVG 234
Query: 333 ILLPVAAALIPVILTISLSILILLQK 358
+ + +P + + ++ L
Sbjct: 235 KIPILLGVWLPNL--LLAALTYRLYL 258
>gi|194336947|ref|YP_002018741.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309424|gb|ACF44124.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 441
Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 58/139 (41%), Gaps = 1/139 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY K ++ + L+ + + ++ + ++ + L + +
Sbjct: 2 KIIDRYILKAHVGSFLFAFVTIIFVLILQFFATFADRFMGK-GIGFTAMVELILLQSAWM 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P LV ++ F +L TSE+ + RA GIS+++L+ P ++ +LL +F N
Sbjct: 61 VGLAAPMAVLVSVVMAFGSLTTTSEMTVFRASGISLYRLMMPVLLAGLLLSLFVERFNNV 120
Query: 123 IATSGEKIGIDLIQQWKDN 141
+ L+ +
Sbjct: 121 VLPEANYYAKSLMVDIARS 139
Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 12/87 (13%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
R ++ + L L+ A + + +R + A +F + + ++ +
Sbjct: 344 RYMAAYHKKYALSLACFVFVLVGAPLGV-LARRGGFGVGAAISLFLFVLYWMLMISGEKI 402
Query: 329 GKSGILLPVAAALIPVILTISLSILIL 355
+ GIL P+ + + + ++ I ++
Sbjct: 403 AERGILDPMISMWLANAVMATVGISLM 429
>gi|163735795|ref|ZP_02143224.1| hypothetical protein RLO149_00570 [Roseobacter litoralis Och 149]
gi|161390881|gb|EDQ15221.1| hypothetical protein RLO149_00570 [Roseobacter litoralis Och 149]
Length = 375
Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 45/316 (14%), Positives = 106/316 (33%), Gaps = 31/316 (9%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L +F L + ++++ + +Q+ S A +P +I
Sbjct: 4 LDRYMLSQLLVLFGFFALVLVAILWINRGVSLFDQLIS-DGQSALVFLEFTALGLPKLIT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P T + V +N SEL + +A G +L P +V +++ + ++ + +
Sbjct: 63 TVLPIATFAAAVYVTNRMNNESELTVLQATGSGPVRLARPVLVFGVIVFLMASVLHHVLM 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWM----------QISNPQQ---DIFIGAKKILP 171
++ + N + ++ Q + D+F+ ++ +
Sbjct: 123 PLAQQQLGHRQNEIAQNATSRLLTEGRFLHPSEGVTFYTQQIDDDGVLRDVFLSDRRHVE 182
Query: 172 ENHIWEDFTSITI-DKKNKIIHRKDADLAIIYNDKVKL--KKVVEYQYGRIPIDKNSTTL 228
E I+ + I D+ + D + +L ++ + + +N +
Sbjct: 183 EGVIYTAAHAYLIRDEDRTSLIMVDGLAQRLTTATDRLATANFRDFSFDISALVQNDVSQ 242
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ ++ + ++S + F+ I PL +
Sbjct: 243 RL---------DPDRMTTFQLLTPWDQLS---RETGRSIGTISQSFHARIADPLFCIVAA 290
Query: 289 LIAASVSL--EFSRSN 302
LI S + FSR
Sbjct: 291 LIGFSTLMIGGFSRFG 306
>gi|119383653|ref|YP_914709.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
gi|119373420|gb|ABL69013.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
Length = 382
Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/292 (13%), Positives = 98/292 (33%), Gaps = 16/292 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP I RY ++ +F L + + ++ + Q+ + A +P
Sbjct: 1 MPRI-DRYILSQFMTLFGFFALVLVSVYWINRAVSLFEQLIS-DGQTALVVLEFTALTLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L+I ++P + L+ SELV +A G+S W++ P +V +L+ + L++
Sbjct: 59 LVISVVLPIAAFAASAYGTNRLSSESELVAMQATGMSPWRMARPVLVFGVLVALMVALLV 118
Query: 121 NPIAT--------SGEKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQDIFIGAKKIL 170
+ + +I ++ Q+ G Q + +++ +
Sbjct: 119 HAVVPMARGRLADRQAEIAQNVTAQFLRAGAFQYPVRGVTLYIRDIAADGRLV----DFF 174
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI 230
E+ D + + ++ + ++ V+ + + + ++
Sbjct: 175 LEDARNPDSQTTYTSTEALLVRTDEGPRLVMMQGMVQNLRHAGNRQSLSVTRFSELAYDL 234
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
+D + + S ++ + RA + + + P
Sbjct: 235 GTLIDTGESRKRDLRAYSTLRLLDPDPELLAATGATRDRALAEAHERLAKPF 286
>gi|315057734|gb|ADT72063.1| Permease YjgP/YjgQ [Campylobacter jejuni subsp. jejuni S3]
Length = 352
Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 55/359 (15%), Positives = 120/359 (33%), Gaps = 22/359 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI-WQLLNPFVVGSILLGIFTVLVINP 122
++P + +V ++ R +E V A+G+S + +L PF+ I+ L
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNF-- 116
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ D + NG +++ +N F+ KI + ++
Sbjct: 117 ---TSFAYANDYKRNILKNGTIMNQSGEVFLKFNNN----FVYISKINNGQNSAQNIKIF 169
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQ--- 238
I+ N + A A + L+ + + + + ++ +
Sbjct: 170 NINDLN-LSSFVSAKNAYFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFK 228
Query: 239 -KFSEQFASRSFYEIIKKMSFSN--KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
K E AS S Y I + K+ + + Y + P + LI
Sbjct: 229 PKIIEGVASNSDYSISDALESFELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFF 288
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+R + M++ ++ ++ ++ ++ ++P+I+ LS +
Sbjct: 289 PVIARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYM 347
>gi|157147734|ref|YP_001455052.1| hypothetical protein CKO_03538 [Citrobacter koseri ATCC BAA-895]
gi|157084939|gb|ABV14617.1| hypothetical protein CKO_03538 [Citrobacter koseri ATCC BAA-895]
Length = 366
Score = 76.8 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 57/363 (15%), Positives = 127/363 (34%), Gaps = 31/363 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ G+ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSRAVLVKAAMVLALFTGVVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + + + + + ++D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQF--QQATNGSAVLFIESV--DGSDFKDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
I K AD + + V L K ++ + D T + G
Sbjct: 177 IRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGH 236
Query: 238 QKF------SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
Q ++Q R+ ++ RA + ++ I + + M L+
Sbjct: 237 QAVALDPNDTDQMDMRTLWQ-------------TDTNRARAELHWRITLVFTVFMMALMV 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+S+ R + + + + + + + T +KS G G L PV ++ ++L+
Sbjct: 284 VPLSVVNPRQGRV-LSMLPAMLLYLLFFLLQTSLKSNGGKGKLDPVIWMWAVNLIYLALA 342
Query: 352 ILI 354
+ +
Sbjct: 343 VGL 345
>gi|321222551|gb|EFX47623.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
Length = 335
Score = 76.8 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 56/323 (17%), Positives = 112/323 (34%), Gaps = 30/323 (9%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
+V ++ GI + + K +++ + K N + Q +N +F
Sbjct: 70 AAMVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGNSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYG 217
I + + D I K AD + + V L K ++
Sbjct: 130 I----ESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGT 185
Query: 218 RIPIDKNSTTLNIPIKMDGFQKF------SEQFASRSFYEIIKKMSFSNKSNIFHNYRAE 271
+ D T + G Q ++Q R+ + N RA
Sbjct: 186 ALLRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWN-------------TDNDRAR 232
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS 331
+ ++ I + + M L+ +S+ R + + + + + + I T +KS G
Sbjct: 233 AELHWRITLVFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSIKSNGGK 291
Query: 332 GILLPVAAALIPVILTISLSILI 354
G L PV ++ ++L+I +
Sbjct: 292 GKLDPVIWMWAVNLIYLALAIGL 314
>gi|313200017|ref|YP_004038675.1| permease [Methylovorus sp. MP688]
gi|312439333|gb|ADQ83439.1| permease YjgP/YjgQ family protein [Methylovorus sp. MP688]
Length = 355
Score = 76.8 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/350 (13%), Positives = 131/350 (37%), Gaps = 29/350 (8%)
Query: 18 LYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIV 77
L G +I V + + G L + +I+ + + + I+ + ++
Sbjct: 8 FLVLFGIVIAQRVAYYIGVAAK-GSLASDAINTLLGFSMLK---FLPMILSLTIFLAVLL 63
Query: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ 137
+R SE+V+ + G+ + + P + +I + ++ + G + Q
Sbjct: 64 TLTRWHRDSEMVVWFSSGMGLAGWIRPVLTFAIPVVAVIAVLSLFVTPWATNKGSEFRDQ 123
Query: 138 WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII------ 191
K + + + N + F+ + ++ ++ ++ + +
Sbjct: 124 LKSRDELASISPGVFKESRNADRVFFV--ESFDELGNVVKNIFVQSVQHQRLGVVVASQG 181
Query: 192 HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGFQKFSEQFASRS 248
HR AD ++ + ++ Y+ + ++T +I I+ + ++ A+
Sbjct: 182 HRTVADNG---DNFLVMEHGRRYEGKPNTAEFSTTEFERYSIRIEPNEVKEEPPGTAALG 238
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
E++K HN + + + IP+ + L+A +S +RS + ++
Sbjct: 239 SVELLK----------NHNPANNAELQWRLAIPISAFLLVLLAIPLSFVDNRSGRSANMM 288
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + +++I++++ G L PV + + L+I + ++
Sbjct: 289 L-ALLIYIIYNNMLSIVQAWLTQGKLNPVVGLWPVHVFFLLLTIWMFYRR 337
>gi|307611507|emb|CBX01181.1| hypothetical protein LPW_28801 [Legionella pneumophila 130b]
Length = 359
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 54/365 (14%), Positives = 118/365 (32%), Gaps = 28/365 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K T + +++ + N+ + L +P ++
Sbjct: 2 IIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAAS-GSIPGFVIMKLLMLELPNLM 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + L SE+ + RA G QLL + ++ + +V+
Sbjct: 61 GLLLPLGFYIALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVMIWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ LI+ Q + I++ QQ ++ + +
Sbjct: 121 SPVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHS 180
Query: 184 IDKKNKIIHRKDADLAIIY------NDKVKLKKVVEYQ--YGRIP---IDKNSTTLNIPI 232
+ + AD A + + L+ EYQ G + S +P
Sbjct: 181 VQDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPN 240
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ +R + + H+ + + + I IPLM++ +TL+A
Sbjct: 241 PTVVMHDDARTAKTRDLWPLNN-----------HDLKKAAELQWRISIPLMVLTLTLVAV 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFM--LYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+S RS + ++ I F + + +G + + L
Sbjct: 290 PLSRVSPRSGKYSKLLPAIIIYIFYANFMFVSRDAIA---TGKIPWWIGMWWVHVAVAIL 346
Query: 351 SILIL 355
IL +
Sbjct: 347 GILFI 351
>gi|224586302|ref|YP_002640101.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|224470830|gb|ACN48660.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
Length = 359
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 56/323 (17%), Positives = 112/323 (34%), Gaps = 30/323 (9%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 34 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 93
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
+V ++ GI + + K +++ + K N + Q +N +F
Sbjct: 94 AAMVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 153
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYG 217
I + + D I K AD + + V L K ++
Sbjct: 154 I----ESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGT 209
Query: 218 RIPIDKNSTTLNIPIKMDGFQKF------SEQFASRSFYEIIKKMSFSNKSNIFHNYRAE 271
+ D T + G Q ++Q R+ + N RA
Sbjct: 210 ALLRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWN-------------TDNDRAR 256
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS 331
+ ++ I + + M L+ +S+ R + + + + + + I T +KS G
Sbjct: 257 AELHWRITLVFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSIKSNGGK 315
Query: 332 GILLPVAAALIPVILTISLSILI 354
G L PV ++ ++L+I +
Sbjct: 316 GKLDPVIWMWAVNLIYLALAIGL 338
>gi|126663513|ref|ZP_01734510.1| hypothetical protein FBBAL38_09194 [Flavobacteria bacterium BAL38]
gi|126624461|gb|EAZ95152.1| hypothetical protein FBBAL38_09194 [Flavobacteria bacterium BAL38]
Length = 132
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 4/125 (3%)
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P + +E I K + + + FY +P+ +T+I
Sbjct: 7 PDDLTPVVYVAETMTIGQLNSFINK-ERARGNGNINT--YLVVFYKKFSLPISAFILTII 63
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A +VS R I +A GI F + + + + P A P I+ L
Sbjct: 64 AVAVS-SMKRRGGMGINLAIGIVIAFTFIFFDKVFGTLAEKSSIPPFLAVWFPNIVFGIL 122
Query: 351 SILIL 355
+ +L
Sbjct: 123 AAYLL 127
>gi|114569777|ref|YP_756457.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
gi|114340239|gb|ABI65519.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
Length = 373
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 51/330 (15%), Positives = 106/330 (32%), Gaps = 34/330 (10%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RYFF L + + L + + + +++ + A +P + +
Sbjct: 6 RYFFNQLLWPFMTAIAAFAGLALLTQSLSNVDLVSGYSETALTFI-KVTALALPHLTALL 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV---INPI 123
+P V + L SELVI+ A G+S + LL+P + + + I + V + P+
Sbjct: 65 VPIALFVAVLSSLNRLTGDSELVIASAAGVSRFGLLSPIMRLGVYVLIANLAVNLLLQPV 124
Query: 124 ATSGEKIGIDLIQQWKDNG-------DKQKSDIIPWMQISNPQQ---DIFIGAKKILPEN 173
A + + ++ + + + + DI I +
Sbjct: 125 AYREMRRSLHTLRSDVAASLVTPGAFSQLGQGVTIYARERGRDGRMQDILIHDSRGTDGA 184
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
T + ++ R A+ L Q +
Sbjct: 185 S--------TYSAREGVVVRSGDRSAM------VLIDGNLQQIDSAGELYYANFDRYEFD 230
Query: 234 MDGFQKFSEQFASRSFYEIIKKM---SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ F ++ + + ++ S + + RA + ++ + PL +A LI
Sbjct: 231 LGEFVGPADAMFFKESDRYLHELLWPSAAEVARTGGPERAWAEAHYRLSAPLYNLAFALI 290
Query: 291 AASVSLE--FSRSNQPRIIVAYGIFSGFML 318
AA+ L SR V + +G L
Sbjct: 291 AAACFLAGDHSRMG-YGRRVMIAVGAGLTL 319
>gi|30248805|ref|NP_840875.1| hypothetical protein NE0801 [Nitrosomonas europaea ATCC 19718]
gi|30180400|emb|CAD84712.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
Length = 358
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 40/349 (11%), Positives = 112/349 (32%), Gaps = 28/349 (8%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAA--TRVP 60
I+ RY + L F++ +IL+ + + + ++ A+ +
Sbjct: 2 KIIERYITRELL---FPFIVVTVILIGLFVSFSVARFLTSAVTETLGTAAMFKLVGLKTI 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++ ++P V I +NR E+ + R G +++ V ++ + I + ++
Sbjct: 59 IALEVLVPIAFYVAVIYGLSRMNRDQEINVLRTAGYGDNRIIRTVFVIALPIAILSGILS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF- 179
I + + + P + + I + E
Sbjct: 119 VYARPWAY--AESYIMDAQAEAELNTNRFQPGRFYGSEKSGRVIFIRGKDDLEKRMEGVF 176
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKV---KLKKVVEYQYGRIPIDKNSTTLN----IPI 232
I + +II ++ + ++ +L++ Y+ + ++
Sbjct: 177 HYIRTTEDREIIISREGYQQPMTAEQWPHIELREGQIYRLSFDTVKDSAIRFEKMIYFNE 236
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ ++RS ++ R + + + P+ V + LIA
Sbjct: 237 NDQAQNYRRKAASTRSLWD-------------SEEPREIAELQWRLSRPVATVLLALIAV 283
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
S + R ++ + Y + + K++ + G++ +
Sbjct: 284 SFTRTAPRKDKTDRTFLVAALVFAVYYNLSGLAKTWVEQGVVAAMPGVW 332
>gi|283834896|ref|ZP_06354637.1| inner membrane protein YjgP [Citrobacter youngae ATCC 29220]
gi|291069156|gb|EFE07265.1| inner membrane protein YjgP [Citrobacter youngae ATCC 29220]
Length = 366
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 64/363 (17%), Positives = 128/363 (35%), Gaps = 31/363 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTSIIAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ K N + Q +N +FI + + D
Sbjct: 121 GPWSSRHQDEVLADAKANPGMAALAQGQFQQATNGSSVLFI----ESVDGSNFNDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
I K AD + + V L K ++ + D T + G
Sbjct: 177 IRPKGNARPSVVVADSGHLTQMRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGH 236
Query: 238 QKF------SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
Q ++Q R+ ++ N RA + + I + + M L+
Sbjct: 237 QAVALDPNDTDQMDMRTLWK-------------TDNDRARAELTWRITLVFTVFMMALMV 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+S+ R + + + + + + + T +KS G G L PV +L ++L+
Sbjct: 284 VPLSVVNPRQGRV-LSMLPAMLLYLLFFLVQTSLKSNGGKGKLDPVFWMWAVNLLYLALA 342
Query: 352 ILI 354
I++
Sbjct: 343 IVL 345
>gi|194426540|ref|ZP_03059094.1| putative permease [Escherichia coli B171]
gi|300928087|ref|ZP_07143635.1| putative inner membrane protein [Escherichia coli MS 187-1]
gi|194415279|gb|EDX31547.1| putative permease [Escherichia coli B171]
gi|300463884|gb|EFK27377.1| putative inner membrane protein [Escherichia coli MS 187-1]
gi|323940179|gb|EGB36373.1| inner membrane protein yjgP [Escherichia coli E482]
Length = 366
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 57/354 (16%), Positives = 125/354 (35%), Gaps = 13/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAINVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFI----ESVDGSDFKDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
I K AD + +L+ + T L ++ FQ +
Sbjct: 177 IRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + ++ RA + + I + + M L+ +S+ R
Sbjct: 233 IIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 293 QGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|209749454|gb|ACI73034.1| hypothetical protein ECs5238 [Escherichia coli]
Length = 366
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 57/354 (16%), Positives = 125/354 (35%), Gaps = 13/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++D
Sbjct: 121 GPWSSRHQDEVLAEAKANPSMAALAQGQFQQATNGSSVLFI----ESVDGSDFKDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
I K AD + +L+ + T L ++ FQ +
Sbjct: 177 IRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + ++ RA + + I + + M L+ +S+ R
Sbjct: 233 IIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 293 QGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|82779327|ref|YP_405676.1| hypothetical protein SDY_4285 [Shigella dysenteriae Sd197]
gi|81243475|gb|ABB64185.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
Length = 366
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 57/354 (16%), Positives = 125/354 (35%), Gaps = 13/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAIILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFI----ESVDGSDFKDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
I K AD + +L+ + T L ++ FQ +
Sbjct: 177 IRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + ++ RA + + I + + M L+ +S+ R
Sbjct: 233 IIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 293 QGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|224373131|ref|YP_002607503.1| putative permease YjgP/YjgQ [Nautilia profundicola AmH]
gi|223589255|gb|ACM92991.1| putative permease YjgP/YjgQ [Nautilia profundicola AmH]
Length = 340
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 54/356 (15%), Positives = 125/356 (35%), Gaps = 26/356 (7%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y K Y K L L +ID +++ + N + +
Sbjct: 5 YIIKKYAKNFLLILFSLAFFFVIIDFIANFSKLPDSSNLQVLYLYYIVLYS----FDMFY 60
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + + + + + +ELV ++G S+ ++L PF+ S L+ + + +
Sbjct: 61 PLAIVFSFLFTMYYMIKFNELVSFYSLGFSVKKILKPFLTFSFLIFFIFIALDSGKMAYV 120
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ ++ + +Q S+ +++ ++ I + D + K
Sbjct: 121 REYADSILNK------RQYSNTNLFIKFNDKIIYIKKIKPILKEA----IDIRVFVL-KD 169
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF-SEQFAS 246
K+ A A+ ND + K I K + ++ S
Sbjct: 170 GKVKKIISAKKAVFVNDIWQAKNAEITFINDKKITKIRNDIFFLKNFKPKIVSNLKKLNS 229
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE---FSRSNQ 303
S Y+ I ++ ++ N FY I L L+ + ++ + R +
Sbjct: 230 ISLYDAI--IAIKIFKDVNVNTLLSMVFY-KIFTALSLIGLIIV---FIFQVPIHQRISN 283
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
+ + +F +++ I ++ F K G++ P ++P + S + +L+++E
Sbjct: 284 VSLFLVKSVFLTILIWGIQLMIYKFSKQGVISPYV-LMVPCFIIYSYGVYLLIKEE 338
>gi|157414610|ref|YP_001481866.1| hypothetical protein C8J_0290 [Campylobacter jejuni subsp. jejuni
81116]
gi|157385574|gb|ABV51889.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni 81116]
gi|315931610|gb|EFV10576.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
327]
Length = 352
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 55/359 (15%), Positives = 120/359 (33%), Gaps = 22/359 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI-WQLLNPFVVGSILLGIFTVLVINP 122
++P + +V ++ R +E V A+G+S + +L PF+ I+ L
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNF-- 116
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ D + NG +++ +N F+ KI + ++
Sbjct: 117 ---TSFAYANDYKRNILKNGTIMNQSGEVFLKFNNN----FVYISKINNGQNSAQNIKIF 169
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQ--- 238
I+ N + A A + L+ + + + + ++ +
Sbjct: 170 NINDLN-LSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFK 228
Query: 239 -KFSEQFASRSFYEIIKKMSFSN--KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
K E AS S Y I + K+ + + Y + P + LI
Sbjct: 229 PKIIEGVASNSDYSISDALESFELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFF 288
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+R + M++ ++ ++ ++ ++ ++P+I+ LS +
Sbjct: 289 PVIARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYM 347
>gi|222085453|ref|YP_002543983.1| permease protein [Agrobacterium radiobacter K84]
gi|221722901|gb|ACM26057.1| permease protein [Agrobacterium radiobacter K84]
Length = 391
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 51/365 (13%), Positives = 124/365 (33%), Gaps = 31/365 (8%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L LL + +++ + + N + + SI A LA +P II ++
Sbjct: 7 YIVRRVGMMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATLILPTIIPVVL 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF ++ +N SEL + A G ++ P ++ +I + +F+ V N +
Sbjct: 66 PFALVIGITQTLTAMNSDSELTVMEAAGARRSIIIRPIMILAIAISVFSFFVDNMVEPKA 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI-TIDK 186
++ + + + + +I + I + + + D
Sbjct: 126 RVAARQMVAEAYADLLSTVIEEKNFRRIEDGLYVQI----TQRMSGRILKGLFVVDSRDP 181
Query: 187 KNKIIH-----RKDADLAII--YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+I+ DA + + + +V K I +S + ++ +
Sbjct: 182 AFDLIYYAKEGAVDASGSSLLMRDGEVHRK---TSDGDVSVIKFDSYSFDLSDMTQSRGQ 238
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + RS ++ ++ ++ + + + LI+ ++ +
Sbjct: 239 ATLRAGDRSLGFLLN-PDPNDADYKAKPSGYRSELHRRLTDWALPAIFALISLVIA-GDA 296
Query: 300 RSNQPRII--VAYGIFSGFM-----LYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
RS++ + + + F Y I + GIL + I ++I
Sbjct: 297 RSHREARLHPMVSALTIAFALRWADFYAANQIETAPYFVGILYGI------NIAATLIAI 350
Query: 353 LILLQ 357
+L +
Sbjct: 351 FLLFR 355
>gi|193212373|ref|YP_001998326.1| permease YjgP/YjgQ family protein [Chlorobaculum parvum NCIB 8327]
gi|193085850|gb|ACF11126.1| permease YjgP/YjgQ family protein [Chlorobaculum parvum NCIB 8327]
Length = 440
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 13/204 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I RY K +L T + + M + + + + ++ A + + +
Sbjct: 2 KIFDRYILKTHLGTFFFAFVTIMSVFILSFVTKFLERLIGK-GLDFGIIAEVVLLQSAWM 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P LV ++ F L +SEL + RA GISI++L+ P ++ ++ L + N
Sbjct: 61 VGFAVPMAVLVTTVMAFGVLTNSSELTVMRAGGISIYRLVAPVLLAALALSLMMERYNNV 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF----IGAKKILPENHIWED 178
+ L D N D+ I A+ + + D
Sbjct: 121 LMPEANYRANALFADITRLKPALGLD-------KNAFSDMIKGYSIMARDVDNKTGELRD 173
Query: 179 FTSITIDKKNKIIHRKDADLAIIY 202
+ + + A I
Sbjct: 174 IVLYDRAQPD-VRTVILAARGKIE 196
Score = 63.7 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 9/91 (9%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ +++ + + ++ A + + +R A +F + + ++ +
Sbjct: 342 RKYMIEYHKKYSLAFACLVFAMVGAPLGV-MARRGGFGAGAALSLFFFVLYWVLMIGGEK 400
Query: 328 FGKSGILLPVAAALIPVILTISLSILILLQK 358
G+L P + +P + + +L +
Sbjct: 401 IADQGLLSPAVSVWLPNAILTCAGLFMLYRL 431
>gi|189501480|ref|YP_001957197.1| permease YjgP/YjgQ family protein [Candidatus Amoebophilus
asiaticus 5a2]
gi|189496921|gb|ACE05468.1| permease YjgP/YjgQ family protein [Candidatus Amoebophilus
asiaticus 5a2]
Length = 527
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 44/268 (16%), Positives = 80/268 (29%), Gaps = 8/268 (2%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
F K ++ + ++ F+I +E+ + + L P
Sbjct: 15 FIKLFILVLSVTVFIMLMQFFLIYFDELIGK-----DLGFWVYVQLFCYFGINATPMAFP 69
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
TLV +++VF +L EL ++ GI ++L P + LL IF I
Sbjct: 70 LATLVSSLMVFGSLGEQLELTALKSAGIPFIRILRPLLFLVTLLSIFVYFSNGYIVPKVT 129
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
L+ + + N D I ++ LP+ ED K
Sbjct: 130 VKAHTLLYDLRKKKPSIAIKEGVFY---NGIPDYSIRVERKLPDQKTLEDIVIYDHTKNK 186
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
+H A + V+E G ++K + + F S
Sbjct: 187 GNVHMTTASFGQLTTINNGQYLVIELFNGHNYLEKLPEKKDNKTSTASSKVIIPNFYRTS 246
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYF 276
F + N + T ++
Sbjct: 247 FKAQKVLIDLDAFKLTRTNEKYFTYYHS 274
Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ M LI AS+ + I + + Y + + K I+ ++ A P
Sbjct: 426 CILMLLIGASLGA-LIKKGGFGIPLLISTVFILLYYMVDIFGTKWAKVDIIDTISGAWAP 484
Query: 344 VILTISLSILIL 355
I+ + + L
Sbjct: 485 NIVLLPFGLFFL 496
>gi|157157059|ref|YP_001465770.1| putaitve permease [Escherichia coli E24377A]
gi|157079089|gb|ABV18797.1| putaitve permease [Escherichia coli E24377A]
Length = 366
Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 57/354 (16%), Positives = 125/354 (35%), Gaps = 13/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFI----ESVDGSDFKDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
I K AD + +L+ + T L ++ FQ +
Sbjct: 177 IRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + ++ RA + + I + + M L+ +S+ R
Sbjct: 233 IIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 293 QGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIIL 345
>gi|319405494|emb|CBI79113.1| conserved membrane hypothetical protein [Bartonella sp. AR 15-3]
Length = 382
Score = 76.4 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 48/308 (15%), Positives = 107/308 (34%), Gaps = 19/308 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y K +LGA+ + + + + N + + ++ +P +
Sbjct: 3 ILELYILKRIFILFSAVMLGAIGISWTVQILARINFLTT-SGQTFLTILYFSSLLIPSVT 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IPF ++ ++ +N+ +EL + A GIS + P ++ +IL + + N I
Sbjct: 62 SLVIPFALVIAITIILSTMNQDTELAVISASGISKNIVWKPILLLAILASFTSFSITNFI 121
Query: 124 ATSGEKIGIDLIQQWKD--------NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
A ++ G Q+ +++I + IG ++ +
Sbjct: 122 APHARLNMRQMLANAHSDLISLFIREGSFQELAKNLYIEIGERNANGTIG--RLFIADQR 179
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN--IPIK 233
K I++ K + I+ + +++ I + +L+ IP K
Sbjct: 180 DHQLGLFYYAAKGAIVNNKKGNFLILNDGEIERIDYKNDNVSIIKFSSYTFSLSEFIPNK 239
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
++ S + K ++ +F+ L + LIA
Sbjct: 240 KTPNIYPKDRPLSYLSNPSPNDPHYQRK-----PFQYRAEFHRRFTECLYPIVFALIAIV 294
Query: 294 VSLEFSRS 301
+ + +RS
Sbjct: 295 I-VGNARS 301
>gi|46199050|ref|YP_004717.1| hypothetical protein TTC0744 [Thermus thermophilus HB27]
gi|55981077|ref|YP_144374.1| hypothetical protein TTHA1108 [Thermus thermophilus HB8]
gi|46196674|gb|AAS81090.1| hypothetical conserved membrane spanning protein [Thermus
thermophilus HB27]
gi|55772490|dbj|BAD70931.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 368
Score = 76.4 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 54/363 (14%), Positives = 111/363 (30%), Gaps = 36/363 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + L L LL V++ + L + + + VP I
Sbjct: 2 ILHRYLLRESLPVLLLALLFLTA-VYLFGFFYAGARW--LEGVPLPKILRWLSYHVPGIW 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q+ P + ++VF L + GI + + P V +L + + +
Sbjct: 59 VQVFPIALVTTTVLVFGRLAAEGAHFALLSAGIPLGRAALPLVAVGAVLSGLALYLQEYV 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWM-QISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ W D Q + + Q + +
Sbjct: 119 VPEANNR---VRVAWWDEIHTQGAGLFRLKGMQIPIGQGKSLYFQDFDMAAKEMVGVRIT 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST---------------- 226
+ ++ A+ + + LK YQ + T
Sbjct: 176 AF--QGEVGTFLFAERGTWEDKTLTLKDYRYYQVDFAQVPGLETAPDLLAQVRRVFRVVS 233
Query: 227 ---TLNIPIKMDGFQKFSEQFASRSF-----YEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
TL + + + ++ + SF E +K+ +RA + + +
Sbjct: 234 QGKTLEVTSDLSRARAIADYADTFSFGQDSLSEAWRKLKD-PFLPPLEKWRARLELHSKL 292
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+PL + + L+AA+++L + +S P + + + Y + ++ G L P
Sbjct: 293 ALPLANLVLVLLAAAMALRYGKS--PGLALGMSVVLALAYYGAFFLGRALAGIGALPPEL 350
Query: 339 AAL 341
A
Sbjct: 351 GAW 353
>gi|15804853|ref|NP_290894.1| hypothetical protein Z5873 [Escherichia coli O157:H7 EDL933]
gi|15834492|ref|NP_313265.1| hypothetical protein ECs5238 [Escherichia coli O157:H7 str. Sakai]
gi|16132083|ref|NP_418682.1| lipopolysaccharide export ABC permease of the LptBFGC export
complex [Escherichia coli str. K-12 substr. MG1655]
gi|26251170|ref|NP_757210.1| hypothetical protein c5362 [Escherichia coli CFT073]
gi|30065452|ref|NP_839623.1| hypothetical protein S4489 [Shigella flexneri 2a str. 2457T]
gi|56480551|ref|NP_709940.2| hypothetical protein SF4228 [Shigella flexneri 2a str. 301]
gi|82546486|ref|YP_410433.1| hypothetical protein SBO_4179 [Shigella boydii Sb227]
gi|89110977|ref|AP_004757.1| conserved inner membrane protein [Escherichia coli str. K-12
substr. W3110]
gi|91213817|ref|YP_543803.1| hypothetical protein UTI89_C4868 [Escherichia coli UTI89]
gi|110644620|ref|YP_672350.1| putative membrane protein YjgP [Escherichia coli 536]
gi|117626605|ref|YP_859928.1| hypothetical protein APECO1_2133 [Escherichia coli APEC O1]
gi|157163736|ref|YP_001461054.1| putative permease [Escherichia coli HS]
gi|168749567|ref|ZP_02774589.1| putative permease [Escherichia coli O157:H7 str. EC4113]
gi|168754843|ref|ZP_02779850.1| putative permease [Escherichia coli O157:H7 str. EC4401]
gi|168760516|ref|ZP_02785523.1| putative permease [Escherichia coli O157:H7 str. EC4501]
gi|168766552|ref|ZP_02791559.1| putative permease, YjgP/YjgQ family [Escherichia coli O157:H7 str.
EC4486]
gi|168774017|ref|ZP_02799024.1| putative permease [Escherichia coli O157:H7 str. EC4196]
gi|168782788|ref|ZP_02807795.1| putative permease [Escherichia coli O157:H7 str. EC4076]
gi|168784911|ref|ZP_02809918.1| putative permease, YjgP/YjgQ family [Escherichia coli O157:H7 str.
EC869]
gi|168797841|ref|ZP_02822848.1| putative permease [Escherichia coli O157:H7 str. EC508]
gi|170021731|ref|YP_001726685.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
gi|170083700|ref|YP_001733020.1| inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
gi|170681521|ref|YP_001746665.1| putative permease [Escherichia coli SMS-3-5]
gi|191170651|ref|ZP_03032203.1| putative permease [Escherichia coli F11]
gi|193063666|ref|ZP_03044754.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
gi|193069837|ref|ZP_03050787.1| putative permease [Escherichia coli E110019]
gi|195937287|ref|ZP_03082669.1| inner membrane protein [Escherichia coli O157:H7 str. EC4024]
gi|208807252|ref|ZP_03249589.1| putative permease [Escherichia coli O157:H7 str. EC4206]
gi|208812743|ref|ZP_03254072.1| putative permease [Escherichia coli O157:H7 str. EC4045]
gi|208819114|ref|ZP_03259434.1| putative permease [Escherichia coli O157:H7 str. EC4042]
gi|209395855|ref|YP_002273806.1| putative permease [Escherichia coli O157:H7 str. EC4115]
gi|209921758|ref|YP_002295842.1| hypothetical protein ECSE_4567 [Escherichia coli SE11]
gi|215489603|ref|YP_002332034.1| conserved inner membrane protein [Escherichia coli O127:H6 str.
E2348/69]
gi|217324429|ref|ZP_03440513.1| putative permease [Escherichia coli O157:H7 str. TW14588]
gi|218556808|ref|YP_002389722.1| hypothetical protein ECIAI1_4492 [Escherichia coli IAI1]
gi|218561419|ref|YP_002394332.1| hypothetical protein ECS88_4848 [Escherichia coli S88]
gi|218698009|ref|YP_002405676.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli 55989]
gi|218707867|ref|YP_002415386.1| hypothetical protein ECUMN_4793 [Escherichia coli UMN026]
gi|227886685|ref|ZP_04004490.1| inner membrane protein [Escherichia coli 83972]
gi|237703936|ref|ZP_04534417.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|238903362|ref|YP_002929158.1| conserved inner membrane protein [Escherichia coli BW2952]
gi|253775116|ref|YP_003037947.1| permease YjgP/YjgQ family protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254164186|ref|YP_003047296.1| inner membrane protein [Escherichia coli B str. REL606]
gi|254796281|ref|YP_003081118.1| inner membrane protein [Escherichia coli O157:H7 str. TW14359]
gi|256019913|ref|ZP_05433778.1| conserved inner membrane protein [Shigella sp. D9]
gi|260847092|ref|YP_003224870.1| inner membrane protein [Escherichia coli O103:H2 str. 12009]
gi|260871013|ref|YP_003237415.1| inner membrane protein [Escherichia coli O111:H- str. 11128]
gi|261225380|ref|ZP_05939661.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255367|ref|ZP_05947900.1| inner membrane protein [Escherichia coli O157:H7 str. FRIK966]
gi|291285673|ref|YP_003502491.1| Inner membrane protein yjgP [Escherichia coli O55:H7 str. CB9615]
gi|293402886|ref|ZP_06646983.1| lipopolysaccharide export system permease lptF [Escherichia coli
FVEC1412]
gi|293407981|ref|ZP_06651821.1| conserved hypothetical protein [Escherichia coli B354]
gi|293417761|ref|ZP_06660383.1| lipopolysaccharide export system permease lptF [Escherichia coli
B185]
gi|293476564|ref|ZP_06664972.1| lipopolysaccharide export system permease lptF [Escherichia coli
B088]
gi|297519576|ref|ZP_06937962.1| Inner membrane protein yjgP [Escherichia coli OP50]
gi|298378412|ref|ZP_06988296.1| lipopolysaccharide export system permease lptF [Escherichia coli
FVEC1302]
gi|300818514|ref|ZP_07098723.1| putative inner membrane protein [Escherichia coli MS 107-1]
gi|300821368|ref|ZP_07101516.1| putative inner membrane protein [Escherichia coli MS 119-7]
gi|300899411|ref|ZP_07117666.1| putative inner membrane protein [Escherichia coli MS 198-1]
gi|300906109|ref|ZP_07123828.1| putative inner membrane protein [Escherichia coli MS 84-1]
gi|300923939|ref|ZP_07139949.1| putative inner membrane protein [Escherichia coli MS 182-1]
gi|300950209|ref|ZP_07164150.1| putative inner membrane protein [Escherichia coli MS 116-1]
gi|300957116|ref|ZP_07169357.1| putative inner membrane protein [Escherichia coli MS 175-1]
gi|300972386|ref|ZP_07171919.1| putative inner membrane protein [Escherichia coli MS 45-1]
gi|300988161|ref|ZP_07178581.1| putative inner membrane protein [Escherichia coli MS 200-1]
gi|301024383|ref|ZP_07188071.1| putative inner membrane protein [Escherichia coli MS 69-1]
gi|301050053|ref|ZP_07196965.1| putative inner membrane protein [Escherichia coli MS 185-1]
gi|301304686|ref|ZP_07210794.1| putative inner membrane protein [Escherichia coli MS 124-1]
gi|301643391|ref|ZP_07243441.1| putative inner membrane protein [Escherichia coli MS 146-1]
gi|306815521|ref|ZP_07449670.1| Inner membrane protein yjgP [Escherichia coli NC101]
gi|307140956|ref|ZP_07500312.1| Inner membrane protein yjgP [Escherichia coli H736]
gi|309792902|ref|ZP_07687330.1| putative inner membrane protein [Escherichia coli MS 145-7]
gi|331645010|ref|ZP_08346127.1| inner membrane protein YjgP [Escherichia coli H736]
gi|331650394|ref|ZP_08351466.1| inner membrane protein YjgP [Escherichia coli M605]
gi|331656095|ref|ZP_08357083.1| inner membrane protein YjgP [Escherichia coli M718]
gi|331660842|ref|ZP_08361774.1| inner membrane protein YjgP [Escherichia coli TA206]
gi|331665930|ref|ZP_08366824.1| inner membrane protein YjgP [Escherichia coli TA143]
gi|331671402|ref|ZP_08372200.1| inner membrane protein YjgP [Escherichia coli TA280]
gi|331680399|ref|ZP_08381058.1| inner membrane protein YjgP [Escherichia coli H591]
gi|331681281|ref|ZP_08381918.1| inner membrane protein YjgP [Escherichia coli H299]
gi|332281053|ref|ZP_08393466.1| conserved hypothetical protein [Shigella sp. D9]
gi|84027984|sp|P0AFA0|LPTF_ECO57 RecName: Full=Lipopolysaccharide export system permease protein
lptF
gi|84027985|sp|P0AF99|LPTF_ECOL6 RecName: Full=Lipopolysaccharide export system permease protein
lptF
gi|84027986|sp|P0AF98|LPTF_ECOLI RecName: Full=Lipopolysaccharide export system permease protein
lptF
gi|84027987|sp|P0AFA1|LPTF_SHIFL RecName: Full=Lipopolysaccharide export system permease protein
lptF
gi|12519273|gb|AAG59460.1|AE005658_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|26111602|gb|AAN83784.1|AE016771_295 Hypothetical protein yjgP [Escherichia coli CFT073]
gi|537103|gb|AAA97158.1| ORF_o366 [Escherichia coli str. K-12 substr. MG1655]
gi|1790712|gb|AAC77218.1| lipopolysaccharide export ABC permease of the LptBFGC export
complex [Escherichia coli str. K-12 substr. MG1655]
gi|13364716|dbj|BAB38661.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|30043716|gb|AAP19435.1| hypothetical protein S4489 [Shigella flexneri 2a str. 2457T]
gi|31323180|gb|AAP43524.1| YjgP [Escherichia coli B]
gi|56384102|gb|AAN45647.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|81247897|gb|ABB68605.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|85677008|dbj|BAE78258.1| conserved inner membrane protein [Escherichia coli str. K12 substr.
W3110]
gi|91075391|gb|ABE10272.1| hypothetical protein UTI89_C4868 [Escherichia coli UTI89]
gi|110346212|gb|ABG72449.1| putative membrane protein YjgP [Escherichia coli 536]
gi|115515729|gb|ABJ03804.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|157069416|gb|ABV08671.1| putative permease [Escherichia coli HS]
gi|169756659|gb|ACA79358.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
gi|169891535|gb|ACB05242.1| conserved inner membrane protein [Escherichia coli str. K-12
substr. DH10B]
gi|170519239|gb|ACB17417.1| putative permease [Escherichia coli SMS-3-5]
gi|187770319|gb|EDU34163.1| putative permease [Escherichia coli O157:H7 str. EC4196]
gi|188016154|gb|EDU54276.1| putative permease [Escherichia coli O157:H7 str. EC4113]
gi|188999811|gb|EDU68797.1| putative permease [Escherichia coli O157:H7 str. EC4076]
gi|189357793|gb|EDU76212.1| putative permease [Escherichia coli O157:H7 str. EC4401]
gi|189364084|gb|EDU82503.1| putative permease, YjgP/YjgQ family [Escherichia coli O157:H7 str.
EC4486]
gi|189368987|gb|EDU87403.1| putative permease [Escherichia coli O157:H7 str. EC4501]
gi|189374999|gb|EDU93415.1| putative permease, YjgP/YjgQ family [Escherichia coli O157:H7 str.
EC869]
gi|189379426|gb|EDU97842.1| putative permease [Escherichia coli O157:H7 str. EC508]
gi|190908875|gb|EDV68462.1| putative permease [Escherichia coli F11]
gi|192930653|gb|EDV83259.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
gi|192956891|gb|EDV87344.1| putative permease [Escherichia coli E110019]
gi|208727053|gb|EDZ76654.1| putative permease [Escherichia coli O157:H7 str. EC4206]
gi|208734020|gb|EDZ82707.1| putative permease [Escherichia coli O157:H7 str. EC4045]
gi|208739237|gb|EDZ86919.1| putative permease [Escherichia coli O157:H7 str. EC4042]
gi|209157255|gb|ACI34688.1| putative permease [Escherichia coli O157:H7 str. EC4115]
gi|209749448|gb|ACI73031.1| hypothetical protein ECs5238 [Escherichia coli]
gi|209749450|gb|ACI73032.1| hypothetical protein ECs5238 [Escherichia coli]
gi|209749452|gb|ACI73033.1| hypothetical protein ECs5238 [Escherichia coli]
gi|209749456|gb|ACI73035.1| hypothetical protein ECs5238 [Escherichia coli]
gi|209915017|dbj|BAG80091.1| conserved hypothetical protein [Escherichia coli SE11]
gi|215267675|emb|CAS12133.1| conserved inner membrane protein [Escherichia coli O127:H6 str.
E2348/69]
gi|217320650|gb|EEC29074.1| putative permease [Escherichia coli O157:H7 str. TW14588]
gi|218354741|emb|CAV01804.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli 55989]
gi|218363577|emb|CAR01234.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli IAI1]
gi|218368188|emb|CAR05996.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli S88]
gi|218434964|emb|CAR15905.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli UMN026]
gi|222036033|emb|CAP78778.1| Inner membrane protein yjgP [Escherichia coli LF82]
gi|226901848|gb|EEH88107.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|227836258|gb|EEJ46724.1| inner membrane protein [Escherichia coli 83972]
gi|238860249|gb|ACR62247.1| conserved inner membrane protein [Escherichia coli BW2952]
gi|242379781|emb|CAQ34608.1| LptF, subunit of LptABCFG ABC transporter [Escherichia coli
BL21(DE3)]
gi|253326160|gb|ACT30762.1| permease YjgP/YjgQ family protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253976089|gb|ACT41760.1| conserved inner membrane protein [Escherichia coli B str. REL606]
gi|253980245|gb|ACT45915.1| conserved inner membrane protein [Escherichia coli BL21(DE3)]
gi|254595681|gb|ACT75042.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
TW14359]
gi|257762239|dbj|BAI33736.1| inner membrane protein [Escherichia coli O103:H2 str. 12009]
gi|257767369|dbj|BAI38864.1| inner membrane protein [Escherichia coli O111:H- str. 11128]
gi|281181359|dbj|BAI57689.1| conserved hypothetical protein [Escherichia coli SE15]
gi|281603540|gb|ADA76524.1| hypothetical protein SFxv_4611 [Shigella flexneri 2002017]
gi|290765546|gb|ADD59507.1| Inner membrane protein yjgP [Escherichia coli O55:H7 str. CB9615]
gi|291321017|gb|EFE60459.1| lipopolysaccharide export system permease lptF [Escherichia coli
B088]
gi|291429801|gb|EFF02815.1| lipopolysaccharide export system permease lptF [Escherichia coli
FVEC1412]
gi|291430479|gb|EFF03477.1| lipopolysaccharide export system permease lptF [Escherichia coli
B185]
gi|291472232|gb|EFF14714.1| conserved hypothetical protein [Escherichia coli B354]
gi|294490862|gb|ADE89618.1| putative permease [Escherichia coli IHE3034]
gi|298280746|gb|EFI22247.1| lipopolysaccharide export system permease lptF [Escherichia coli
FVEC1302]
gi|300298211|gb|EFJ54596.1| putative inner membrane protein [Escherichia coli MS 185-1]
gi|300305971|gb|EFJ60491.1| putative inner membrane protein [Escherichia coli MS 200-1]
gi|300316134|gb|EFJ65918.1| putative inner membrane protein [Escherichia coli MS 175-1]
gi|300356989|gb|EFJ72859.1| putative inner membrane protein [Escherichia coli MS 198-1]
gi|300396609|gb|EFJ80147.1| putative inner membrane protein [Escherichia coli MS 69-1]
gi|300402052|gb|EFJ85590.1| putative inner membrane protein [Escherichia coli MS 84-1]
gi|300410965|gb|EFJ94503.1| putative inner membrane protein [Escherichia coli MS 45-1]
gi|300419817|gb|EFK03128.1| putative inner membrane protein [Escherichia coli MS 182-1]
gi|300450449|gb|EFK14069.1| putative inner membrane protein [Escherichia coli MS 116-1]
gi|300526257|gb|EFK47326.1| putative inner membrane protein [Escherichia coli MS 119-7]
gi|300528918|gb|EFK49980.1| putative inner membrane protein [Escherichia coli MS 107-1]
gi|300840036|gb|EFK67796.1| putative inner membrane protein [Escherichia coli MS 124-1]
gi|301078221|gb|EFK93027.1| putative inner membrane protein [Escherichia coli MS 146-1]
gi|305851183|gb|EFM51638.1| Inner membrane protein yjgP [Escherichia coli NC101]
gi|307556431|gb|ADN49206.1| putative membrane protein YjgP [Escherichia coli ABU 83972]
gi|307629337|gb|ADN73641.1| Inner membrane protein yjgP [Escherichia coli UM146]
gi|308123188|gb|EFO60450.1| putative inner membrane protein [Escherichia coli MS 145-7]
gi|309704765|emb|CBJ04116.1| putative permease [Escherichia coli ETEC H10407]
gi|312948914|gb|ADR29741.1| inner membrane protein [Escherichia coli O83:H1 str. NRG 857C]
gi|315255620|gb|EFU35588.1| putative inner membrane protein [Escherichia coli MS 85-1]
gi|315288386|gb|EFU47784.1| putative inner membrane protein [Escherichia coli MS 110-3]
gi|315293628|gb|EFU52980.1| putative inner membrane protein [Escherichia coli MS 153-1]
gi|315298978|gb|EFU58232.1| putative inner membrane protein [Escherichia coli MS 16-3]
gi|320639018|gb|EFX08664.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
O157:H7 str. G5101]
gi|320644388|gb|EFX13453.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
O157:H- str. 493-89]
gi|320649705|gb|EFX18229.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
O157:H- str. H 2687]
gi|320655102|gb|EFX23063.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320660608|gb|EFX28069.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
O55:H7 str. USDA 5905]
gi|320665535|gb|EFX32581.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
O157:H7 str. LSU-61]
gi|323380352|gb|ADX52620.1| permease YjgP/YjgQ family protein [Escherichia coli KO11]
gi|323935383|gb|EGB31731.1| inner membrane protein yjgP [Escherichia coli E1520]
gi|323950670|gb|EGB46548.1| inner membrane protein yjgP [Escherichia coli H252]
gi|323955547|gb|EGB51311.1| inner membrane protein yjgP [Escherichia coli H263]
gi|323965650|gb|EGB61104.1| inner membrane protein yjgP [Escherichia coli M863]
gi|323975396|gb|EGB70497.1| inner membrane protein yjgP [Escherichia coli TW10509]
gi|324013725|gb|EGB82944.1| putative inner membrane protein [Escherichia coli MS 60-1]
gi|324019238|gb|EGB88457.1| putative inner membrane protein [Escherichia coli MS 117-3]
gi|324118822|gb|EGC12714.1| inner membrane protein yjgP [Escherichia coli E1167]
gi|331035985|gb|EGI08223.1| inner membrane protein YjgP [Escherichia coli H736]
gi|331040788|gb|EGI12946.1| inner membrane protein YjgP [Escherichia coli M605]
gi|331046449|gb|EGI18539.1| inner membrane protein YjgP [Escherichia coli M718]
gi|331051884|gb|EGI23923.1| inner membrane protein YjgP [Escherichia coli TA206]
gi|331056981|gb|EGI28975.1| inner membrane protein YjgP [Escherichia coli TA143]
gi|331071247|gb|EGI42604.1| inner membrane protein YjgP [Escherichia coli TA280]
gi|331071862|gb|EGI43198.1| inner membrane protein YjgP [Escherichia coli H591]
gi|331081502|gb|EGI52663.1| inner membrane protein YjgP [Escherichia coli H299]
gi|332103405|gb|EGJ06751.1| conserved hypothetical protein [Shigella sp. D9]
Length = 366
Score = 76.4 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 57/354 (16%), Positives = 125/354 (35%), Gaps = 13/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFI----ESVDGSDFKDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
I K AD + +L+ + T L ++ FQ +
Sbjct: 177 IRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + ++ RA + + I + + M L+ +S+ R
Sbjct: 233 IIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 293 QGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|283833700|ref|ZP_06353441.1| permease YjgP/YjgQ [Citrobacter youngae ATCC 29220]
gi|291071386|gb|EFE09495.1| permease YjgP/YjgQ [Citrobacter youngae ATCC 29220]
Length = 356
Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 53/360 (14%), Positives = 119/360 (33%), Gaps = 24/360 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY + + ++G +I +F I + +++ + +V + +
Sbjct: 3 LIERYIMFE-VSRLVAIIVGFLIFIFAIYSAQRYLTDAANGTLALTAVLAIVFYKVIIAL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ ++P V + L+ SE+ A G S +L + +I LGI L+
Sbjct: 62 EMLLPVGLYVSVGIALGQLHAESEITALLAAGSSPLRLYKTVMYFAIPLGILVTLLSMFG 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
L QQ + D + + + I A I P+ D T
Sbjct: 122 RPWAYMQIYRLEQQSQSELDIS---HLRARKFNVNDHGHMILAATISPDTGHLTDMLIYT 178
Query: 184 IDKKNKIIHRKDADLAIIYNDK-----VKLKKVVEYQYGRIPIDKNSTTL--NIPIKMDG 236
+ + R A I N V L Y+ ++ + + I++
Sbjct: 179 PSENTSSLFR--AHCGDITNPSPLTPSVALHSGTSYRLDHHNGQGDNGQIFQRLNIQLKP 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ S ++ + + + + I + + M L+A SVS
Sbjct: 237 LMQNPITRRKASSMTALRTSTDPGDTA---------ELQWRISRGINALLMALLAVSVSR 287
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + ++ + + Y + ++ +G L + + V + + + +L+
Sbjct: 288 VKPRQGRFSTLIPLSLLFTCIFYG-GNVCRTLVANGALPVIPGVWL-VQILMLFGVGMLI 345
>gi|16125010|ref|NP_419574.1| hypothetical protein CC_0757 [Caulobacter crescentus CB15]
gi|221233731|ref|YP_002516167.1| hypothetical protein CCNA_00794 [Caulobacter crescentus NA1000]
gi|13421992|gb|AAK22742.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220962903|gb|ACL94259.1| conserved membrane spanning protein [Caulobacter crescentus NA1000]
Length = 397
Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 4/188 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P L RY + L L+ M+ + L + + + + A L P
Sbjct: 4 PNTLDRYLLRRTLAPMSAVLISTMVAFLMERLMRSFDLLSQTTE-GLRYLAELLVNLTPH 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P + VV LN++SE+ A G S+ + PFV +LL + +V++
Sbjct: 63 YVGLTLPGGFFIGLFVVVNGLNKSSEIDAILASGTSLTRFTAPFVAMGVLLMVLSVILFG 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ ++ ++ G + + D F+ A + +
Sbjct: 123 FVQPYSRYAYHAVLHAAENAGWNGDVRPKALL---SAGSDFFLTADRTDASGRYLQQVFI 179
Query: 182 ITIDKKNK 189
ID +
Sbjct: 180 RRIDPNGR 187
>gi|261879842|ref|ZP_06006269.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270333501|gb|EFA44287.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 642
Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/197 (15%), Positives = 66/197 (33%), Gaps = 8/197 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ R F +L T M + F+ + G +A VP
Sbjct: 12 ITRQFGLLFLGTFFICQFVLM-MQFLWRFVDDLIGKGLSMEILAQFFWYMALMLVP---- 66
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q P L+ +++ F NL +SEL +A GIS+ Q ++ ++++ + + N I
Sbjct: 67 QAFPLAILLSSLITFGNLGESSELTAIKAAGISLMQSFRSLILITMIICLGSFYFQNNIG 126
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L+ K + + + + + + +K + +
Sbjct: 127 PMANMKLAQLLFSMKQKSPELEIPEGVFY---DGIPNTNLYVQKKDVKTGKLYGIMIYRM 183
Query: 185 DKKNKIIHRKDADLAII 201
+ + AD ++
Sbjct: 184 TQSYEDAAIILADSGML 200
>gi|218702964|ref|YP_002410593.1| hypothetical protein ECIAI39_4734 [Escherichia coli IAI39]
gi|218372950|emb|CAR20831.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli IAI39]
Length = 366
Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 57/354 (16%), Positives = 125/354 (35%), Gaps = 13/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-SDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFI----ESVDGSDFKDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
I K AD + +L+ + T L ++ FQ +
Sbjct: 177 IRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + ++ RA + + I + + M L+ +S+ R
Sbjct: 233 IIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 293 QGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|205356037|ref|ZP_03222805.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni CG8421]
gi|205346161|gb|EDZ32796.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni CG8421]
Length = 352
Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 56/359 (15%), Positives = 121/359 (33%), Gaps = 22/359 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI-WQLLNPFVVGSILLGIFTVLVINP 122
++P + +V ++ R +E V A+G+S + +L PF+ I+ L
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNF-- 116
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ D + NG +++ +N F+ KI + ++
Sbjct: 117 ---TSFAYANDYKRNILKNGTIMNQSGEVFLKFNNN----FVYISKINNGQNSAQNIKIF 169
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQ--- 238
I+ N + A A + L+ + + + + ++ +
Sbjct: 170 NINDLN-LSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFK 228
Query: 239 -KFSEQFASRSFYEIIKKMSFSN--KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
K E AS S Y I + K+ + + Y + P + LI
Sbjct: 229 PKIIEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFFAPFLMLIMYYFF 288
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+R I+ M++ ++ ++ ++ ++ ++P+I+ LS +
Sbjct: 289 PVIARFFNLAIVTFVAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYM 347
>gi|300023217|ref|YP_003755828.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525038|gb|ADJ23507.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 398
Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 50/335 (14%), Positives = 115/335 (34%), Gaps = 46/335 (13%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +Y F+ + ++ +V++ N + + + VP ++
Sbjct: 3 IFSKYVFRQAAGSFALIMVSLTGIVWIALALRQFNVVTS-QGQDTWMLIKMTSLAVPNLM 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I PF L+ + LN SEL++ A G +W P ++ ++L+ IF V +
Sbjct: 62 AVIAPFSFLIAALHTLNRLNTDSELIVISASGAKVWTAARPLLLLALLVSIFLAFVSHFA 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQ----------KSDIIPWMQISNPQQD---IFIGAKK-- 168
+ D + Q + + Q ++ ++ ++ + + + + +
Sbjct: 122 QPWSMRQLRDYMVQVRSDLLTQVIQPGRFTSPETGLMFHIRDRDANGELLGLVMHDTRDK 181
Query: 169 -----ILPENHIW--EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI 221
L E+ +D T+ + II R DA N ++V + + +
Sbjct: 182 AQSQSYLAEHGTLVKQDGTAYLVMTVGHIIRRTDA------NGP---PQIVAFDKYIVDL 232
Query: 222 DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
D+ P + +++ + + + S+ N+ F ++ + V P
Sbjct: 233 DRFEPQDGGPGDLKPRERYFSELINPD----PESSSYKNQPGQF-----RSELHERFVTP 283
Query: 282 LMLVAMTLIAASV-----SLEFSRSNQPRIIVAYG 311
L +A + + S SR +
Sbjct: 284 LYPLAFAFLIIAFVGQAQSTRTSRMQSLVVTFVIA 318
>gi|162146456|ref|YP_001600915.1| hypothetical protein GDI_0632 [Gluconacetobacter diazotrophicus PAl
5]
gi|209543541|ref|YP_002275770.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161785031|emb|CAP54575.1| putative membrane protein [Gluconacetobacter diazotrophicus PAl 5]
gi|209531218|gb|ACI51155.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 363
Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 53/356 (14%), Positives = 125/356 (35%), Gaps = 14/356 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ Y + K L M L + ++ S + L ++ + +
Sbjct: 2 IIRNYLLREIGKPLAAMLGVCMALFASYSAADFLSEAVN-GLLSTNTILALVTLKLLIGL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ ++P + ++ L SE+ A+ ++ +L + + + I L+ +
Sbjct: 61 EVLVPVSLYLSIVLALGALYGNSEITALHALRVTPGMILRHVMTLAAGVAIVVGLLSLFV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+L + + + D + + N + IF+ ++ P + F +
Sbjct: 121 RPWAYHQLHNLSKSAQLSLDVDAMQAGTFYVVQNGARVIFL-TEREGPGTPARDIFVQVR 179
Query: 184 IDKKNKIIHRKDA----DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
K +IIH + D + V+LK Y GR P + I D +
Sbjct: 180 RAKTTQIIHAELGYPMTDEGKQSDVYVRLKNAHVYDIGRQPGVSDKVLTVREITQDPNRH 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+E S + S + H +F + + P+ + + ++A ++
Sbjct: 240 STEPLGYSSI------AAPSLQLAASHAPADVAEFQWRLSTPITTMLLAMLAVPLARGRP 293
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA-LIPVILTISLSILI 354
R N+ + I F+ Y + T +++ + G++ + P +L + ++
Sbjct: 294 RQNRYGK-LGAAILIFFVYYLLYTSARTWVQHGMVAAMPGIWWAPALLAVLTGFML 348
>gi|281423648|ref|ZP_06254561.1| putative permease [Prevotella oris F0302]
gi|281402200|gb|EFB33031.1| putative permease [Prevotella oris F0302]
Length = 637
Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/206 (14%), Positives = 65/206 (31%), Gaps = 12/206 (5%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLG---AMILVFVIDLNEIQNQMGELPNYSISRGAVLA 55
M I L + K + + +++ F+ + G +
Sbjct: 6 MIRIKKLDIFIAKQFGMLFVGTFFICQFVLMMQFLWRYIDDLIGKGLSMEIMAKFFWYMG 65
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
VP Q +P L+ +++ F NL +SEL +A GIS+ Q +V ++ +
Sbjct: 66 LMLVP----QALPLAILLSSLIAFGNLGESSELTAIKAAGISLMQAFRSLIVITLFVSGV 121
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+ + N I L+ K + + + + + + + +
Sbjct: 122 SFVFQNNIGPEANNKIAQLLMSMKQKSPELEIPEGIFY---DGIPNSNLYVQHKDLKTGK 178
Query: 176 WEDFTSITIDKKNKIIHRKDADLAII 201
+ + AD ++
Sbjct: 179 LYGIMIYRMTGSYEDQAIILADSGML 204
Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ E + + L + I A + R I V + + Y +
Sbjct: 371 RQHEIEAISKFTVALSCLIFFFIGAPLGA-IIRKGGLGIPVIISVLVFIVYYILDNSGYR 429
Query: 328 FGKSGILLPVAA-ALIPVIL 346
+SGI L P IL
Sbjct: 430 MSRSGIWTVWFGKGLAPAIL 449
>gi|121591520|ref|ZP_01678785.1| inner membrane protein YjgP [Vibrio cholerae 2740-80]
gi|121546628|gb|EAX56818.1| inner membrane protein YjgP [Vibrio cholerae 2740-80]
Length = 277
Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/188 (12%), Positives = 59/188 (31%), Gaps = 5/188 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + +P + I EN +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHF--QRSPDGSSVVFIDNI--ENRKLYNVFVAQ 176
Query: 184 IDKKNKII 191
+ ++ I+
Sbjct: 177 LAPRDSIL 184
>gi|148358635|ref|YP_001249842.1| permease [Legionella pneumophila str. Corby]
gi|296108275|ref|YP_003619976.1| Predicted permease [Legionella pneumophila 2300/99 Alcoy]
gi|148280408|gb|ABQ54496.1| permease [Legionella pneumophila str. Corby]
gi|295650177|gb|ADG26024.1| Predicted permease [Legionella pneumophila 2300/99 Alcoy]
Length = 359
Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 56/365 (15%), Positives = 118/365 (32%), Gaps = 28/365 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K T + +++ + N+ + L +P ++
Sbjct: 2 IIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAAS-GSIPGFVIMKLLMLELPNLM 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P V ++ + L SE+ + RA G QLL + ++ + +V+
Sbjct: 61 GLLLPLGFYVALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVMIWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ LI+ Q + I++ QQ ++ + +
Sbjct: 121 SPVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHS 180
Query: 184 IDKKNKIIHRKDADLAIIY------NDKVKLKKVVEYQ--YGRIP---IDKNSTTLNIPI 232
+ + AD A + + L+ EYQ G + S +P
Sbjct: 181 VQDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPN 240
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ +R + + H+ + + + I IPLM++ +TL+A
Sbjct: 241 PTVVMNDDARTAKTRDLWPLNN-----------HDLKKAAELQWRISIPLMVLTLTLVAV 289
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFM--LYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+S RS + ++ I F + + GK + + L
Sbjct: 290 PLSRVSPRSGKYSKLLPAIIIYIFYANFMFVSRDAIATGK---IPWWIGMWWVHVAVAIL 346
Query: 351 SILIL 355
IL +
Sbjct: 347 GILFI 351
>gi|317046771|ref|YP_004114419.1| permease YjgP/YjgQ family protein [Pantoea sp. At-9b]
gi|316948388|gb|ADU67863.1| permease YjgP/YjgQ family protein [Pantoea sp. At-9b]
Length = 396
Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 49/362 (13%), Positives = 123/362 (33%), Gaps = 29/362 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 32 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLTLLGLGVPEMA 90
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ +L I + + +
Sbjct: 91 QLILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKSAMILMLLTSIVAAINVIWL 150
Query: 124 ATSGEKIGIDLIQQWKDNGD---------KQKSDIIPWMQISNPQQDIF--IGAKKILPE 172
+ ++ Q K N + SD + + + + + F + ++ P+
Sbjct: 151 GPWSSRYQDEVTQNAKANPGAAALAAGQFQTSSDGNAVLFVEDVRGNTFGNVFLAQLRPK 210
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
+ + R D + + + + + RI + L
Sbjct: 211 GNARPSVVL---ADSGHMEQRPDGSQIVTLDKGTRFEGTAMLRDFRITDFVDYKALIGYK 267
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ +EQ RS ++ ++ + + + + ++ M L+
Sbjct: 268 QAVLDPNDAEQADMRSLWQ-------------SNDPTFTAELNWRLTLVFSVLIMALMVV 314
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+S+ R + + + + + + + + +KS G P + ++L++
Sbjct: 315 PLSVVNPRQGRV-LSMLPAMLLYLIFFLLQSSLKSNSAKGKFDPTLWMWVVNFAYLALAV 373
Query: 353 LI 354
+
Sbjct: 374 GL 375
>gi|323960302|gb|EGB55943.1| inner membrane protein yjgP [Escherichia coli H489]
Length = 366
Score = 76.4 bits (187), Expect = 7e-12, Method: Composition-based stats.
Identities = 57/354 (16%), Positives = 125/354 (35%), Gaps = 13/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFI----ESVDGSDFKDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
I K AD + +L+ + T L ++ FQ +
Sbjct: 177 IRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + ++ RA + + I + + M L+ +S+ R
Sbjct: 233 IIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 293 QGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|307543948|ref|YP_003896427.1| permease [Halomonas elongata DSM 2581]
gi|307215972|emb|CBV41242.1| K07091 [Halomonas elongata DSM 2581]
Length = 361
Score = 76.4 bits (187), Expect = 7e-12, Method: Composition-based stats.
Identities = 40/364 (10%), Positives = 102/364 (28%), Gaps = 22/364 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L+T ++++ + E + L +P +
Sbjct: 2 IIFRYLTREILQTMAAVAGVLLLVIMGSRFIRYFSNAAE-GEIPVDILGTLMLFHLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++ L SE+ + A G S +LL ++ + ++ I L +
Sbjct: 61 ELILPLAFFLGILLALGQLYLNSEITVLVACGTSPNRLLWVSLLPATVVAILVGLCSLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF--TS 181
+G ++ + D + N + + + E +
Sbjct: 121 TPAGALQNEIILDEQSSQLDFGVLAPG---RFQNFGGGRVAYTEALSEQERRLEGVFISE 177
Query: 182 ITIDKKNKIIHRKD-ADLA------IIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI-PIK 233
A + + L Y + ++
Sbjct: 178 RQRRDDGTPQTVVTRAAEGYQTIDEETGSRFLVLSDGERYSVEPGRAVAEHLSFGTYAVR 237
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + + + Q + + +P M+ +TL+A
Sbjct: 238 LSRAAAERDDLDDPEYATTPALFADGSAPA-------MAQLQWRLGLPPMVFILTLLAMP 290
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S R + + IF +++ G + + +L
Sbjct: 291 LSRVNPRQGRFAK-LLPAIFLYVAYLSLLLAALDAIARGAWPTTLGMWPIHAAFLVIGLL 349
Query: 354 ILLQ 357
+ L+
Sbjct: 350 MTLR 353
>gi|126462312|ref|YP_001043426.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17029]
gi|126103976|gb|ABN76654.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17029]
Length = 376
Score = 76.4 bits (187), Expect = 7e-12, Method: Composition-based stats.
Identities = 56/370 (15%), Positives = 129/370 (34%), Gaps = 40/370 (10%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRG------AVLAATRVPLII 63
F YL + L L G LV V L N+ L + IS G + +P +I
Sbjct: 4 FDRYLLSQLVALFGFFSLVLV--LVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNVI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ ++P I V L++ SELV+ +A G S ++L P + +++ + ++++N +
Sbjct: 62 RLVLPLSAFAATIYVVNRLSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNLL 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQ----------KSDIIPWMQISNPQQ---DIFIGAKKIL 170
+ + N + + +++ D+ + +
Sbjct: 122 VPASRATLSARSAEISQNATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRDP 181
Query: 171 PENHIWEDFTSITIDKKNKIIHR-KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
+ + ++ + D + + +L+ ++ + D +
Sbjct: 182 ARSTAYTARRALLVRTDTTPKLLMIDGSAQTLTREGRRLE---LTRFDDVTYDLGAFMTG 238
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
K ++ E++++ + + ++ + I P + A +L
Sbjct: 239 SGPKRRVLEELPTMTLLAPTAEVLEETRSTRAAALYEG-------HSRIGQPFLGFASSL 291
Query: 290 IA-ASVSLE-FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG--ILLPVAAALIPVI 345
I A++ L FSR + + + ++ TI G + + AA +
Sbjct: 292 IGFAALLLGSFSRFG-LWWQILFAVLLLIVVQTINVAASGVGVTDEQLWPLAYAA---PV 347
Query: 346 LTISLSILIL 355
+ IL+L
Sbjct: 348 TGFVIGILLL 357
>gi|325853208|ref|ZP_08171296.1| permease, YjgP/YjgQ family [Prevotella denticola CRIS 18C-A]
gi|325484384|gb|EGC87307.1| permease, YjgP/YjgQ family [Prevotella denticola CRIS 18C-A]
Length = 703
Score = 76.4 bits (187), Expect = 7e-12, Method: Composition-based stats.
Identities = 34/209 (16%), Positives = 78/209 (37%), Gaps = 18/209 (8%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAV----- 53
M I L + + + + F I +FV+ + + + +L +S +
Sbjct: 60 MFRIRKLDIFIARQFG---MLFAGTFFISLFVLMMQFLWRYVDDLIGKGLSMDVLGQFFW 116
Query: 54 -LAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
++ VP Q +P L+ +++ + NL +SEL ++ GIS+ Q +V S+L+
Sbjct: 117 YMSLMMVP----QALPLAILLSSLISYGNLGESSELTAIKSAGISLVQSFRGLIVISVLI 172
Query: 113 GIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE 172
+ N + S +K L+ K + + + + + + +K +
Sbjct: 173 ACGSFYFQNNVGPSAQKHIAQLLISMKQKSPELEIPEGIFY---DGIPNTNLYVEKKDLK 229
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAII 201
+ + + AD ++
Sbjct: 230 TGHLYNIMVYRMTDSYEDQAIILADSGML 258
>gi|299141277|ref|ZP_07034414.1| permease [Prevotella oris C735]
gi|298577237|gb|EFI49106.1| permease [Prevotella oris C735]
Length = 632
Score = 76.4 bits (187), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/206 (14%), Positives = 65/206 (31%), Gaps = 12/206 (5%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLG---AMILVFVIDLNEIQNQMGELPNYSISRGAVLA 55
M I L + K + + +++ F+ + G +
Sbjct: 1 MIRIKKLDIFIAKQFGMLFVGTFFICQFVLMMQFLWRYIDDLIGKGLSMEIMAKFFWYMG 60
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
VP Q +P L+ +++ F NL +SEL +A GIS+ Q +V ++ +
Sbjct: 61 LMLVP----QALPLAILLSSLIAFGNLGESSELTAIKAAGISLMQAFRSLIVITLFVSGV 116
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+ + N I L+ K + + + + + + + +
Sbjct: 117 SFVFQNNIGPEANNKIAQLLMSMKQKSPELEIPEGIFY---DGIPNSNLYVQHKDLKTGK 173
Query: 176 WEDFTSITIDKKNKIIHRKDADLAII 201
+ + AD ++
Sbjct: 174 LYGIMIYRMTGSYEDQAIILADSGML 199
Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ E + + L + I A + R I V + + Y +
Sbjct: 366 RQHEIEAISKFTVALSCLIFFFIGAPLGA-IIRKGGLGIPVIISVLVFIVYYILDNSGYR 424
Query: 328 FGKSGILLPVAA-ALIPVIL 346
+SGI L P IL
Sbjct: 425 MSRSGIWTVWFGKGLAPAIL 444
>gi|288800724|ref|ZP_06406181.1| putative permease [Prevotella sp. oral taxon 299 str. F0039]
gi|288332185|gb|EFC70666.1| putative permease [Prevotella sp. oral taxon 299 str. F0039]
Length = 636
Score = 76.0 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 34/206 (16%), Positives = 70/206 (33%), Gaps = 12/206 (5%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLG---AMILVFVIDLNEIQNQMGELPNYSISRGAVLA 55
M I L + K + + +++ F+ + G + +
Sbjct: 1 MFRIKKLDIFIVKQFGLLFIGTFFICQFVLMMQFLWRYIDDLIGKGLTIDVLAQFFWYMG 60
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
VP Q +P L+ +++ + NL +SEL +A GIS+ Q +V +IL+
Sbjct: 61 LMLVP----QALPLAILLSSLIAYGNLGESSELTAIKAAGISLMQSCRGLIVITILIAFS 116
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+ N I + LI +D + + + + + + I +K E
Sbjct: 117 SFYFQNNIGPTANLKLAQLILSMRDKSPETQIPVGVFY---DGIPNSNIYVQKKDNETGK 173
Query: 176 WEDFTSITIDKKNKIIHRKDADLAII 201
+ + AD ++
Sbjct: 174 LYGIMIYRMTGSYEDQAIILADSGML 199
Score = 36.4 bits (83), Expect = 7.4, Method: Composition-based stats.
Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 5/81 (6%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ Y I + L + I A + R I + + Y +
Sbjct: 372 HWIEAYNKITLALSCLLFFFIGAPLGA-IIRKGGLGIPIIVSVLVFITYYILDNSGYRMA 430
Query: 330 KSGILLPVAAALIPVILTISL 350
+ GI A L + +
Sbjct: 431 REGIW----AIWFGKTLAMVI 447
>gi|326626150|gb|EGE32495.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 335
Score = 76.0 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 56/323 (17%), Positives = 112/323 (34%), Gaps = 30/323 (9%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
+V ++ GI + + K +++ + K N + Q +N +F
Sbjct: 70 AAMVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYG 217
I + + D I K AD + + V L K ++
Sbjct: 130 I----ESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGT 185
Query: 218 RIPIDKNSTTLNIPIKMDGFQKF------SEQFASRSFYEIIKKMSFSNKSNIFHNYRAE 271
+ D T + G Q ++Q R+ + N RA
Sbjct: 186 ALLRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWN-------------TDNDRAR 232
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS 331
+ ++ I + + M L+ +S+ R + + + + + + I T +KS G
Sbjct: 233 AELHWRITLVFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSIKSNGGK 291
Query: 332 GILLPVAAALIPVILTISLSILI 354
G L PV ++ ++L+I +
Sbjct: 292 GKLDPVIWMWAVNLIYLALAIGL 314
>gi|238921310|ref|YP_002934825.1| hypothetical protein NT01EI_3454 [Edwardsiella ictaluri 93-146]
gi|238870879|gb|ACR70590.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 366
Score = 76.0 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 42/353 (11%), Positives = 124/353 (35%), Gaps = 11/353 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ + L +++ F + I + + + L +P +
Sbjct: 2 IIIRYLVRETVKSQVAILFILLLIFFCQKMVRILGAVVN-GDIPTNLVFSLLGLGIPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V + + G ++ +
Sbjct: 61 QLILPLSLFLGLLMTLGRLYTESEITVMHACGLSKAVLVKAAMVLAFITGALALVNAFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + + N + S+ + + + + +
Sbjct: 121 SPWSSLHSDEVMAEARANPGLASLAEGQF--QSSQDGNYVLFVGNVKDKKFQNVFLAQLR 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ AD + V++K + T + ++ F +S
Sbjct: 179 PSGSQRPSVVV-ADSGHL----VEMKDGAQKVVLDSGTRYEGTAMLRDFRITDFVDYSAI 233
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYR--AETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+S ++ ++H+ +F++ + + ++ M L+ +S+ R
Sbjct: 234 IGHKSAMLDPNNADQASMEALWHSQEPSFRAEFHWRLTLVFSVIVMALMVVPLSVVNPRQ 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + + ++S G L P+ + L++++
Sbjct: 294 GRV-LSMLPAMLLYLIFFLLQSSLRSNGGKDKLDPMIWMWAVNGFYLLLAVVL 345
>gi|188495933|ref|ZP_03003203.1| putative permease [Escherichia coli 53638]
gi|188491132|gb|EDU66235.1| putative permease [Escherichia coli 53638]
Length = 366
Score = 76.0 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 57/354 (16%), Positives = 125/354 (35%), Gaps = 13/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFI----ESVDGSDFKDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
I K AD + +L+ + T L ++ FQ +
Sbjct: 177 IRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + ++ RA + + I + + M L+ +S+ R
Sbjct: 233 IIGYQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 293 QGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|219871563|ref|YP_002475938.1| permease [Haemophilus parasuis SH0165]
gi|219691767|gb|ACL32990.1| permease, inner membrane protein yjgP [Haemophilus parasuis SH0165]
Length = 366
Score = 76.0 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 40/306 (13%), Positives = 93/306 (30%), Gaps = 14/306 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + L +++ F L + + L +P +
Sbjct: 2 ILSRYLTKEIFKSQIAILFILLVIFFCQQLVRVLSSAVS-GKVPTDLVLSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ SE+ + RA G+ L+ + SI V + +
Sbjct: 61 QLMLPLSLFIALLLTLGRFYAESEITVMRACGVGQSLLVKAALFLSIFTTAVAVYNVFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+++ + K N +M + I +++ D
Sbjct: 121 TPWAINKQSEMLAEAKANPRFAALAAGQFMSAGG----YVLFIDNI--KDNTINDIYVFQ 174
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+++ K A + L + T ++ F ++
Sbjct: 175 PEQQKKNKPSVVVAKSGELQG----LPNGDQMLNLTNSTRYEGTPQTADFRISHFDNYNA 230
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNY--RAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ K + ++ + A+ + + + + L + M L+A +S R
Sbjct: 231 YLGYQDVDSDEKLVQRADFQKLLSETSPEAQAELQWRLALILSVPLMALLAVPMSSVNPR 290
Query: 301 SNQPRI 306
+
Sbjct: 291 QGRFAK 296
>gi|325268898|ref|ZP_08135523.1| hypothetical protein HMPREF9141_0732 [Prevotella multiformis DSM
16608]
gi|324988870|gb|EGC20828.1| hypothetical protein HMPREF9141_0732 [Prevotella multiformis DSM
16608]
Length = 640
Score = 76.0 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 78/209 (37%), Gaps = 18/209 (8%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAV----- 53
M I L + + + + F I +FV+ + + + +L +S +
Sbjct: 1 MFRIRKLDIFIARQFG---MLFAGTFFISLFVLMMQFLWRYVDDLIGKGLSVDVLGQFFW 57
Query: 54 -LAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
++ VP Q +P L+ +++ + NL +SEL R+ GIS+ Q +V S+L+
Sbjct: 58 YMSLMMVP----QALPLAILLSSLISYGNLGESSELTAIRSAGISLVQSFRGLIVISVLI 113
Query: 113 GIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE 172
+ N + S +K L+ K + + + + + + +K +
Sbjct: 114 ACGSFYFQNNVGPSAQKHIAQLLISMKQKSPELEIPEGIFY---DGIPNTNLYVEKKDLK 170
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAII 201
+ + + AD ++
Sbjct: 171 TGHLYNIMVYRMTDSYEDQAIILADSGML 199
>gi|197105522|ref|YP_002130899.1| hypothetical protein PHZ_c2059 [Phenylobacterium zucineum HLK1]
gi|196478942|gb|ACG78470.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
Length = 386
Score = 76.0 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 54/321 (16%), Positives = 119/321 (37%), Gaps = 19/321 (5%)
Query: 48 ISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVV 107
+ A LA VP + +P + I+V +N+ SE+ A G+S+ +L P++V
Sbjct: 36 FTFVAQLAVNLVPHYVGLTLPAAFFIALIIVVNRMNQASEIDALLAAGVSLTRLAAPYLV 95
Query: 108 GSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK 167
+ +L T++V + ++ ++ G S +P I P D+ +
Sbjct: 96 LAGVLSFLTLIVFGALQPYSRYAYRAVLHAAQNAGW---SGQVPEGTIIAPNDDLIMTTD 152
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY------NDKVKLKKVVEYQYGR--- 218
+ + + + A +A + N + LK + ++ R
Sbjct: 153 QADAAGQRLTRVFIRRLTPEGR-EEVTTAGVAELRRTADGKNVTLMLKDGQQLRFNRRGE 211
Query: 219 ---IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY 275
+ + + L + + + +E+ KK ++ ++ + Y
Sbjct: 212 PELLSFEDFTMQLPLSGPARLLRARGGDERELNLFELAKK--ANDPQSVIPRETLLAELY 269
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ L L + L+A + L RS + ++ GI + +I + +SF ++G
Sbjct: 270 GRLARALALPLLPLLAVPLGLSAKRSGRAPGVIVGGILL-LAFHHLIQLGQSFAETGRAP 328
Query: 336 PVAAALIPVILTISLSILILL 356
A IP + ++ + L
Sbjct: 329 AEAGVGIPFVAFAAICFTVFL 349
>gi|261253953|ref|ZP_05946526.1| predicted permease [Vibrio orientalis CIP 102891]
gi|260937344|gb|EEX93333.1| predicted permease [Vibrio orientalis CIP 102891]
Length = 368
Score = 76.0 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 43/359 (11%), Positives = 119/359 (33%), Gaps = 26/359 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L ++ L ++ + + S A +P +
Sbjct: 2 IIVRYLIRETLKSQLAIFFILFLVFLSQKLIKVLADASD-GDIPASLVMHYVALSMPSMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ G+
Sbjct: 61 LLMLPLSLFLGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLAVITGLIAGFNSFYF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + + L ++ + + P + + +
Sbjct: 121 APYSQDKLVQLQEEVEAENSVDLLKKGQF--QGTPDGSSVVFID--DIDGKQLKHVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKM--- 234
+ ++ I+ ++ + + + +++ Y+ +D T + +
Sbjct: 177 MRPRDSILPSVSFSQSGEVKELSDGRQVIRMYDGTRYEGVPTRVDYMVTEFDQYEGLIGQ 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
Q+ + + +++K + RA+ + + I + + + +T++ +
Sbjct: 237 RDVQRKGRDWEALPTMDLMK----------NPDPRAQAELQWRISLVVCIPLLTMLVVPL 286
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
S R + + I + I+ KS + G + + P+ + L+ L
Sbjct: 287 SAVNPRQGRFAKM-GPAILIYLAYFLSISATKSALEDGTIPTMVGMW-PINAALLLTAL 343
>gi|281422565|ref|ZP_06253564.1| putative permease [Prevotella copri DSM 18205]
gi|281403389|gb|EFB34069.1| putative permease [Prevotella copri DSM 18205]
Length = 632
Score = 76.0 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 28/200 (14%), Positives = 65/200 (32%), Gaps = 10/200 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLG---AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L + K + + +++ F+ + G + + VP
Sbjct: 7 LDIFIAKQFGLLFMGTFFICQFVLMMQFLWRYIDELIGKGLTMDVMAQFFWYMGLMLVP- 65
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
Q +P L+ +++ F NL +SEL +A GIS+ Q +V +I++ + N
Sbjct: 66 ---QALPLAILLSSLMTFGNLGESSELTAIKAAGISLMQAFRSLIVITIIIMFGSFYFQN 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ L+ K + + + + + + +K +
Sbjct: 123 NVGPKSNMKLAQLLISMKQKSPELEIPEGIFY---DGIPNCNLYVQKKDLKTGKLYGIMI 179
Query: 182 ITIDKKNKIIHRKDADLAII 201
+ + AD ++
Sbjct: 180 YRMTDSYEDAAIILADSGML 199
>gi|150395989|ref|YP_001326456.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
gi|150027504|gb|ABR59621.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
Length = 390
Score = 76.0 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/323 (12%), Positives = 101/323 (31%), Gaps = 18/323 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY F+ L LL M +V+ N + + SI LA +P +
Sbjct: 2 KLIERYIFRRATIMFLATLLPLMGIVWTTQALANVNLVTD-SGQSIIAFLKLATLILPSV 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I+PF ++ +N SEL + A G S ++ P + + L + + + N
Sbjct: 61 VPIILPFALVIGVTQTLSAMNTDSELTVLSAAGSSRMSIIRPVMFLAAGLSVLSFTIDNF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ +I + + + +GA++ + +
Sbjct: 121 VEPYSRVSVRKMIATAHADLLASVVQE-NAFRKITDGLYVQVGARRS---GGVLHGI-FV 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ A + + + +K ++ + + +
Sbjct: 176 ADARDPNFELVYYAREGAVDEGRSALVMKDGEVHRKLPDGDVSIIKFDSYAFDLTDLTRM 235
Query: 241 SEQFASRS----FYEIIKKMSFSNKSNIFHNYRAETQFY---FLIVIPLMLVAMTLIAA- 292
+ + R+ + ++ +++ + + PL+ + L+A+
Sbjct: 236 TGEANIRAKDRDLFYLLD-PDPDDEAYKRAPRAFAAELHRRFTEWTFPLLFGLIALVASS 294
Query: 293 -SVSLEFSRSNQPRIIVAYGIFS 314
+ S +R + + +
Sbjct: 295 DARSHREARVHPMVSALGAALVI 317
>gi|237729198|ref|ZP_04559679.1| YjgP [Citrobacter sp. 30_2]
gi|226908927|gb|EEH94845.1| YjgP [Citrobacter sp. 30_2]
Length = 366
Score = 76.0 bits (186), Expect = 8e-12, Method: Composition-based stats.
Identities = 58/354 (16%), Positives = 125/354 (35%), Gaps = 13/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTSIIAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFI----ESVDGSNFKDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
I K AD + +++ + T L ++ FQ +
Sbjct: 177 IRPKGNARPSVVVADSGHLT----QMRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ N ++ RA + + I + + M L+ +S+ R
Sbjct: 233 IIGHQAVALDPNDTDQMNMRTLWTTDTDRARAELTWRITLVFTVFMMALMVVPLSVVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + T +KS G G L PV + ++L+I++
Sbjct: 293 QGRV-LSMLPAMLLYLLFFLVQTSLKSNGGKGKLDPVFWMWTVNLAYLALAIVL 345
>gi|313683045|ref|YP_004060783.1| permease yjgp/yjgq family protein [Sulfuricurvum kujiense DSM
16994]
gi|313155905|gb|ADR34583.1| permease YjgP/YjgQ family protein [Sulfuricurvum kujiense DSM
16994]
Length = 362
Score = 76.0 bits (186), Expect = 9e-12, Method: Composition-based stats.
Identities = 49/356 (13%), Positives = 123/356 (34%), Gaps = 23/356 (6%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
YL+ L+ + DL E +++ +S + + + + ++P
Sbjct: 7 LSSLYLRYFSIVLIALSSFMVGFDLMENASELP----HSANLVLIYIMYKYFYAVDMMLP 62
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
I L R++ LV +IG S ++L PF+ + LL + + + +
Sbjct: 63 ISLTFAMIASLVELVRSNALVAYFSIGYSKARILAPFLTMTTLL----ISIYIGLHATNF 118
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ +D+ + + + +I + P + ED T +K
Sbjct: 119 ARANEFADNLRDSSEFIRPTSNLFFTHEGN----YIYFGNLYPLSKRAEDIRIFTFEK-G 173
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQY---------GRIPIDKNSTTLNIPIKMDGFQK 239
++ A A+ N ++K + G + DK + + K +
Sbjct: 174 QLKEALSASEAVYRNGFWNIEKAHMLRPPEDFDLKGLGIVTEDKENLKVLRDFKPKILDQ 233
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
E + + + ++ ++ K+ + + Y + + P + +I + + S
Sbjct: 234 VYEGKVNFTITDGLEALTLL-KNQNVDVAKIMSGMYRMFITPWFAPLLMVIFFTYTPVSS 292
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + I + M++ ++ + + + P ++P+ L + + L
Sbjct: 293 RFLNLSLFSFGAILATLMVWGLLFMFGELSNNKTISPEIGIILPIGLLFIVMVWRL 348
>gi|238793061|ref|ZP_04636690.1| Inner membrane protein yjgP [Yersinia intermedia ATCC 29909]
gi|238727661|gb|EEQ19186.1| Inner membrane protein yjgP [Yersinia intermedia ATCC 29909]
Length = 364
Score = 76.0 bits (186), Expect = 9e-12, Method: Composition-based stats.
Identities = 51/369 (13%), Positives = 129/369 (34%), Gaps = 31/369 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ ++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALFTSALAAVNTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGD---------KQKSDIIPWMQISNPQQDIF--IGAKKILPE 172
K +++ + N K +D + I N F + ++ P
Sbjct: 121 GPWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVTGREFNRVFLAQLRPN 180
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
+ + R D +I N + + + RI + +
Sbjct: 181 GNQRPSVVV---ADSGHMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQ 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
++ +EQ + + + ++N +F++ + + + ++ M L+
Sbjct: 238 EVQQNNNVAEQMSMKQLW----------RANQPDT---RAEFHWRLTLIVSVIIMALLVV 284
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+S+ R + + + + + + + + ++S +G L P + ++ L++
Sbjct: 285 PLSVVNPRQGRV-LSMLPAMLLYLIFFLLQSSLRSNAGNGKLDPFI--WMWIVNGAYLAV 341
Query: 353 LILLQKEDG 361
++L DG
Sbjct: 342 AVVLNLWDG 350
>gi|54298619|ref|YP_124988.1| hypothetical protein lpp2683 [Legionella pneumophila str. Paris]
gi|53752404|emb|CAH13836.1| hypothetical protein lpp2683 [Legionella pneumophila str. Paris]
Length = 359
Score = 76.0 bits (186), Expect = 9e-12, Method: Composition-based stats.
Identities = 53/343 (15%), Positives = 113/343 (32%), Gaps = 31/343 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K T + +++ + N+ + L +P ++
Sbjct: 2 IIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAAS-GSIPGFVIMKLLMLELPNLM 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P V ++ + L SE+ + RA G QLL + ++ + +V+
Sbjct: 61 GLLLPLGFYVALLLAYGRLYAESEMTVLRACGYGPKQLLKHSFAMATVVLVVVAVVMIWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ-QDIFIGAKKILPENHIWEDFTS- 181
+ I ++ + + G K I + + + ++ E
Sbjct: 121 SPV---IAVERTKLIRSTGIKTLVQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMA 177
Query: 182 -ITIDKKNKIIHRKDADLAIIY------NDKVKLKKVVEYQ--YGRIP---IDKNSTTLN 229
++ + AD A + + L+ EYQ G + S
Sbjct: 178 KHSVQDNRLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSK 237
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+P + +R + + HN + + + I IPLM++ +TL
Sbjct: 238 LPNPTVVMHDDARTAKTRDLWPLNN-----------HNLKKAAELQWRISIPLMVLTLTL 286
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFM--LYTIITIMKSFGK 330
+A +S RS + ++ I F + + GK
Sbjct: 287 VAVPLSRVSPRSGKYSKLLPAIIIYIFYANFMFVSRDAIATGK 329
>gi|282879343|ref|ZP_06288087.1| putative membrane protein [Prevotella buccalis ATCC 35310]
gi|281298540|gb|EFA90965.1| putative membrane protein [Prevotella buccalis ATCC 35310]
Length = 635
Score = 76.0 bits (186), Expect = 9e-12, Method: Composition-based stats.
Identities = 28/206 (13%), Positives = 65/206 (31%), Gaps = 12/206 (5%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLG---AMILVFVIDLNEIQNQMGELPNYSISRGAVLA 55
M I L + K + +++ F+ ++ G +
Sbjct: 1 MFRIKKLDLFIAKQFGLLFAGTFFICQFVLMMQFLWRYVDVLIGKGLSMEVMAQFFWYMG 60
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
VP Q +P L+ +++ F NL +SEL ++ GIS + +V S+++
Sbjct: 61 LFLVP----QALPLAILLASLITFGNLGESSELTAIKSAGISTMRTFRSLIVISVVVCFC 116
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+ N + S L+ + + + + + + +K +
Sbjct: 117 SFYFQNYVGPSANMKMAQLMISMSQKNPELEIPEGIFY---DGIPNSNLYVQKKDMDTGK 173
Query: 176 WEDFTSITIDKKNKIIHRKDADLAII 201
+ + AD ++
Sbjct: 174 LYGIMIYRMTGSYEDQAIILADSGML 199
>gi|254473376|ref|ZP_05086773.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
gi|211957492|gb|EEA92695.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
Length = 415
Score = 76.0 bits (186), Expect = 9e-12, Method: Composition-based stats.
Identities = 53/334 (15%), Positives = 123/334 (36%), Gaps = 28/334 (8%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+ RY + + L +V+ + + ++ + + A +P +
Sbjct: 20 KTIERYIIRRSFTAFIVTLAAMTGVVWSTQALRQLDLVTSKGQ-TLLQFGYITALALPFL 78
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I + PF ++ I+V +++R SEL++ A G S W +L P + S+ + +
Sbjct: 79 ILIVAPFAMMLAFIIVLNSMSRDSELIVINASGASKWLVLRPIMTFSLCVTALMYFLSIY 138
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE----NHIWED 178
++ +G +L + ++II + ++++ + + + +D
Sbjct: 139 LSPTGLA---ELRSELTRVRVDLVANIIKPGRFIPIEENLTFHIRNRSGDGVLEGLLLDD 195
Query: 179 F----TSITIDKK-NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN--IP 231
TS T + +II D L ++ + ++ + + + L+ IP
Sbjct: 196 ARDPETSFTYTAETGRIIEAADKTLLVMLDGTIQRRPKGGQDMSIVSFESYGFDLSSMIP 255
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ K SE+ F + S + + + +F+ + +PL +A LI
Sbjct: 256 EAREPTFKASERPT---FDLLSASPDDSYAAKHWD--KLIVEFHDRLSVPLYPIAFGLII 310
Query: 292 ASV--SLEFSR-SNQPRIIVAYGIF-----SGFM 317
+ S + +R I + +GF
Sbjct: 311 YAFLGSPKTTRQDQGLAITTTIAVATLLRTAGFG 344
>gi|270157967|ref|ZP_06186624.1| putative permease [Legionella longbeachae D-4968]
gi|289163766|ref|YP_003453904.1| Predicted membrane protein [Legionella longbeachae NSW150]
gi|269989992|gb|EEZ96246.1| putative permease [Legionella longbeachae D-4968]
gi|288856939|emb|CBJ10753.1| Predicted membrane protein [Legionella longbeachae NSW150]
Length = 359
Score = 76.0 bits (186), Expect = 9e-12, Method: Composition-based stats.
Identities = 59/364 (16%), Positives = 123/364 (33%), Gaps = 26/364 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K L T + +++ L + N+ + L +P ++
Sbjct: 2 IIFRYLAKEVLITLISLTSILVLIFLSNQLIQYLNRAAS-GSIPGVIIMKLMMLELPTLL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IP + ++ + L SE+ + RA G +LL ++ + ++G +V+
Sbjct: 61 CLLIPLGFYIAMLLAYGRLYAESEMTVLRACGYGPNKLLKHSLIMATVVGFIVAIVMIWG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN-PQQDIFIGAKKILPENHIWEDFTS- 181
+ I I+ + + G + I + + + + ++ E
Sbjct: 121 SPL---IYIERAKLLRSTGIQTLVQTIMPGRFHAINEGKEVFYVQSMSRDHTKAEQVFLA 177
Query: 182 --ITIDKKNKIIHRKDADLA------IIYNDKVKLKKVVEYQ--YGRIPIDKNSTTLNIP 231
T+D K + AD A D + L+ EYQ G
Sbjct: 178 KRTTVDDKTR-WDVLWADQAFAETDPKTGEDYIILQNGKEYQGVPGHADYQIAEFGEYKA 236
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K SE F + S + + + + +P+M+ A+TLIA
Sbjct: 237 RLPHPVVKISEDFRTISTANLFPFNNTDRAKA--------AELQWRFSVPIMVFALTLIA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+S RS + + I + ++ I + SG + + I+
Sbjct: 289 VPLSRINPRSGKFAK-LLPAIIIYIVYANLLFIARDAMVSGKMPQWLGLWWVHLCIIAFG 347
Query: 352 ILIL 355
+ ++
Sbjct: 348 LWLI 351
>gi|293390144|ref|ZP_06634478.1| 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|290950678|gb|EFE00797.1| 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase [Aggregatibacter actinomycetemcomitans
D7S-1]
Length = 372
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 53/361 (14%), Positives = 127/361 (35%), Gaps = 27/361 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + L +++ F L + L +P +
Sbjct: 6 ILTRYLTKEIFKSQIAILFILLLIFFCQQLVRVLGSAAN-GKVPADLVFSLLGLGMPTMA 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ L SE+ + RA G+ L+ ++ S+L +
Sbjct: 65 QLMLPLCLFIAILLTLGRLYAESEITVMRACGVGQPILVKVVLLLSLLTSGVAAYNALWL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++++ K N + ++ +N +FI +N+ +
Sbjct: 125 TPWAIHKQTEIVEDAKANPNVGALSAGQFVSANNSDFVLFI----DDIQNNQINNVYVFQ 180
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ + A+ + + + L+ ++ D ++ F
Sbjct: 181 TQPRGQSKPSVIVAEKGELKALPNGDQVLNLQNSERFEGTAALPDF---------RITHF 231
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNY--RAETQFYFLIVIPLMLVAMTLIAASVS 295
++ ++ + + + S + + A+T+F++ + + L + M L+A +S
Sbjct: 232 DEYQAYLGHKAVNDDSAEAEELSLSQLLNTKTPAAKTEFHWRLTLILAVPIMALLAVPLS 291
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP--VILTISLSIL 353
R + V + + + + + +KS G +G L +P I+ L+IL
Sbjct: 292 RVNPRQGRFAK-VLPALLLYLIYFLLQSSLKSAGGAGKLDAGL--FMPLVNIVFFLLAIL 348
Query: 354 I 354
+
Sbjct: 349 L 349
>gi|238761816|ref|ZP_04622790.1| Inner membrane protein yjgP [Yersinia kristensenii ATCC 33638]
gi|238699930|gb|EEP92673.1| Inner membrane protein yjgP [Yersinia kristensenii ATCC 33638]
Length = 364
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/369 (13%), Positives = 129/369 (34%), Gaps = 31/369 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ +++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALITSALASVNTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG-----------AKKILPE 172
K +++ + N + ++ +FIG ++ P
Sbjct: 121 GPWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVTGKEFNRVFLAQLRPN 180
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
+ +I R D +I N + + + RI + +
Sbjct: 181 GNQRPSVVV---ADSGHMIERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQ 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
++ +EQ + ++ SN +F++ + + + ++ M L+
Sbjct: 238 EVQQNNNVAEQMTMKQLWD----------SNKPDA---RAEFHWRLTLIVSVIIMALLVV 284
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+S+ R + + + + + + + + ++S G L P+ + + + L++
Sbjct: 285 PLSVVNPRQGRV-LSMLPAMLLYLIFFLLQSSLRSNASGGKLDPLI--WMWAVNGVYLAV 341
Query: 353 LILLQKEDG 361
++L DG
Sbjct: 342 AVILNLWDG 350
>gi|261867783|ref|YP_003255705.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|261413115|gb|ACX82486.1| 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase [Aggregatibacter actinomycetemcomitans
D11S-1]
Length = 372
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 53/361 (14%), Positives = 127/361 (35%), Gaps = 27/361 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + L +++ F L + L +P +
Sbjct: 6 ILTRYLTKEIFKSQIAILFILLLIFFCQQLVRVLGSAAN-GKVPADLVFSLLGLGMPTMA 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ L SE+ + RA G+ L+ ++ S+L +
Sbjct: 65 QLMLPLCLFIAILLTLGRLYAESEITVMRACGVGQPILVKVVLLLSLLTSGVAAYNALWL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++++ K N + ++ +N +FI +N+ +
Sbjct: 125 TPWAIHKQTEIVEDAKANPNVGALSAGQFVSANNSDFVLFI----DDIQNNQINNVYVFQ 180
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ + A+ + + + L+ ++ D ++ F
Sbjct: 181 TQPRGQSKPSVIVAEKGELKALPNGDQVLNLQNSERFEGTAALPDF---------RITHF 231
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNY--RAETQFYFLIVIPLMLVAMTLIAASVS 295
++ ++ + + + S + + A+T+F++ + + L + M L+A +S
Sbjct: 232 DEYQAYLGHKAVNDDSAETEELSLSQLLNTKTPAAKTEFHWRLTLILAVPIMALLAVPLS 291
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP--VILTISLSIL 353
R + V + + + + + +KS G +G L +P I+ L+IL
Sbjct: 292 RVNPRQGRFAK-VLPALLLYLIYFLLQSSLKSAGGAGKLDAGL--FMPLVNIVFFLLAIL 348
Query: 354 I 354
+
Sbjct: 349 L 349
>gi|194437844|ref|ZP_03069939.1| putative permease [Escherichia coli 101-1]
gi|256025197|ref|ZP_05439062.1| hypothetical protein E4_17633 [Escherichia sp. 4_1_40B]
gi|260858413|ref|YP_003232304.1| inner membrane protein [Escherichia coli O26:H11 str. 11368]
gi|301325194|ref|ZP_07218718.1| putative inner membrane protein [Escherichia coli MS 78-1]
gi|331671169|ref|ZP_08372002.1| inner membrane protein YjgP [Escherichia coli TA271]
gi|194423340|gb|EDX39332.1| putative permease [Escherichia coli 101-1]
gi|257757062|dbj|BAI28564.1| inner membrane protein [Escherichia coli O26:H11 str. 11368]
gi|300847955|gb|EFK75715.1| putative inner membrane protein [Escherichia coli MS 78-1]
gi|323945994|gb|EGB42032.1| inner membrane protein yjgP [Escherichia coli H120]
gi|323970485|gb|EGB65744.1| inner membrane protein yjgP [Escherichia coli TA007]
gi|331061758|gb|EGI33684.1| inner membrane protein YjgP [Escherichia coli TA271]
Length = 366
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 57/354 (16%), Positives = 125/354 (35%), Gaps = 13/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFI----ESVDGSDFKDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
I K AD + +L+ + T L ++ FQ +
Sbjct: 177 IRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + ++ RA + + I + + M L+ +S+ R
Sbjct: 233 IIGHQAVALDPNDTDQMDMCTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 293 QGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|148977744|ref|ZP_01814300.1| putative permease [Vibrionales bacterium SWAT-3]
gi|145962958|gb|EDK28228.1| putative permease [Vibrionales bacterium SWAT-3]
Length = 360
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/355 (10%), Positives = 108/355 (30%), Gaps = 27/355 (7%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ +K+ ++ + + S + + +P + ++P
Sbjct: 1 MIRETIKSQFAIFFVLFLVFLSQKFISVLADASD-GAIPASLILSIVSLNMPAMGLLMLP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ ++ F L SE+V+ A GI L+ + +++ ++ +
Sbjct: 60 LSIYIGILLTFGRLYAESEIVVMNATGIGNKFLIQSALYLALITASVAAFNSFWLSPWSQ 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ ++ + P + + + E+ + ++
Sbjct: 120 DKVEQMYEEVAAENSVDLLPKGKF--EGTPDGSSVVFID--DIDGNKLENVFVAQMRPRD 175
Query: 189 KII----HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
++ + K D+ + + ++V+ G + + F+++
Sbjct: 176 SVLPSVMYSKSGDVKELSDG----RQVIVMYDG---TRHEGVPTRLDYMVTHFEEYEGLI 228
Query: 245 ASRSF------YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
R +E I + N + + ++ IPL+ T++ +S
Sbjct: 229 GQREVEKKGRDWEAIPTLDLVGNPNNSAKAELQWRISLVLCIPLL----TMLVVPLSAVN 284
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + + I + I+ KS + G + V L + ++I
Sbjct: 285 PRQGRFAK-IGPAILIYLTYFLAISATKSAIEEGSIPAVVGMWPINALLLIVAIG 338
>gi|283780133|ref|YP_003370888.1| permease [Pirellula staleyi DSM 6068]
gi|283438586|gb|ADB17028.1| permease YjgP/YjgQ family protein [Pirellula staleyi DSM 6068]
Length = 386
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 53/383 (13%), Positives = 114/383 (29%), Gaps = 43/383 (11%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVID----LNEIQNQMGELPNYSISRGAVLAATRV 59
+ RY +++ L + L VID L+E N + + + V
Sbjct: 3 TIDRYVLTIFIRVLLICFVSLAGLFVVIDCLGNLDEFSNYGEKHAGGILGVIFEYYSAHV 62
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
+ I + +V I L RT EL A GIS + + + + ++ +
Sbjct: 63 LGFFDRTIGLLAMVAAIFTVTWLQRTQELTALAAAGISPARAMRSVFIAAGIVALLGAAN 122
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
Q W ++ + + DI I + +
Sbjct: 123 REFNLPQMRAKLGRNAQDWLGENSRRFVPKF------DMRSDILISGASTVAKEQKIVAP 176
Query: 180 TSITIDKKNKII--------HRKDADLAII------YNDKVKLKKVVE-YQYGRIPIDKN 224
+ D + + + A A+ + ++ V + ++
Sbjct: 177 NFLLPDDRTEQLPVELVSWGRAIQAREALYQPATDEHPSGYLMRGVTQPLAVAQLSSVSL 236
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-------------- 270
I D ++ S + + + Y
Sbjct: 237 HNEPTILAPRDHRWLAPDECFVSSVVTFEQLAASNAWRQYLSTYELVTGLKTRTIQPGAD 296
Query: 271 -ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN-QPRIIVAYGIFSGFMLYTIITIMKSF 328
+ + +V PL+ MTL+ + L ++ N + A + + ++ S
Sbjct: 297 IKVTLHARLVQPLLD--MTLLFLGLPLVLTKGNRNIFLAAAICLLLVGSFFIVVMTCHSL 354
Query: 329 GKSGILLPVAAALIPVILTISLS 351
G + +L P AA +P+++ L+
Sbjct: 355 GSNYLLSPTMAAWLPLLIFGPLA 377
>gi|260174364|ref|ZP_05760776.1| hypothetical protein BacD2_21081 [Bacteroides sp. D2]
Length = 616
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 76/234 (32%), Gaps = 5/234 (2%)
Query: 18 LYFLLGAMILVFVIDLNEIQNQMGELPNYSI--SRGAVLAATRVPLIIQQIIPFITLVVN 75
+ F+ I +F+ + + + EL + S A ++ +P L+ +
Sbjct: 1 MLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLVPVSLPLAVLLAS 60
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
++ F N EL+ +A GIS+ +++ P L + N + + LI
Sbjct: 61 LITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQAKLGTLI 120
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKD 195
K + + + +D + K + + D + + H
Sbjct: 121 LSMKQKSPELDIPEGVFY---SEIKDYNLKVAKKNRKTGMLYDVLIYNMKDGFENAHIIY 177
Query: 196 ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
AD + K + G + + + +L + F E+ F
Sbjct: 178 ADSGRLEMTADKQHLWLHLYSGDLFENLKAQSLKSQNVPYRRESFREKHTIIEF 231
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/98 (14%), Positives = 33/98 (33%), Gaps = 1/98 (1%)
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 340 KFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLVFI 398
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I + G + + L + +
Sbjct: 399 IYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGVFL 436
>gi|114328863|ref|YP_746020.1| hypothetical protein GbCGDNIH1_2199 [Granulibacter bethesdensis
CGDNIH1]
gi|114317037|gb|ABI63097.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
CGDNIH1]
Length = 400
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 54/317 (17%), Positives = 110/317 (34%), Gaps = 29/317 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFV---IDLNEIQNQMGELPNYSISRGAVLAATRVP 60
L RY + L + G + L+++ + E+ G S+ L +P
Sbjct: 20 TLDRYVMRQLLVALVACTCGLVALIWLTQSLRFIELVVNRG----LSVFVFLKLTGLLIP 75
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IIP T VV V+ L EL + RA G+S W + P ++ ++L + + ++
Sbjct: 76 SFVAVIIPITTYVVVQFVYQRLAGDRELTVMRAAGLSSWVMARPALLVALLTMLLSFVLN 135
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I + + + ++ + +S+ D+ + +K + +
Sbjct: 136 LWIVPAAFSAFREYQWEIRNKMAAFLLQDGVFTPVSD---DMIVYIRKRDADGTL----H 188
Query: 181 SITIDKKNKIIH--RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI------ 232
I ID K A + +VV R +D+++ LNI
Sbjct: 189 GILIDDARKADSHATIIAQRGRMEQGSNGAPQVVLESGSRQELDRHTGRLNILTFNENTI 248
Query: 233 ---KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ ++ S S E++ + R + + + PL +++ +
Sbjct: 249 SLEQSGKDEQRSRDANEMSLTELLHPDPSQVMARDIPKLR--VEAHRRLSGPLNVLSFAV 306
Query: 290 IAASVSLE--FSRSNQP 304
+A L F R
Sbjct: 307 VALVSVLNGAFRRHGGL 323
>gi|154174950|ref|YP_001408879.1| methionyl-tRNA formyltransferase [Campylobacter curvus 525.92]
gi|112803667|gb|EAU01011.1| methionyl-tRNA formyltransferase [Campylobacter curvus 525.92]
Length = 356
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 60/362 (16%), Positives = 129/362 (35%), Gaps = 30/362 (8%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY YLK+ L + IDL + S + + + + +
Sbjct: 8 RYVGWVYLKSFLIVFFALELFYVGIDLLTNLKDLPN----SANLQLLYVGLTLLSAVSYV 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + I+ N+ R++ELV A+G+S L+ P ++ + V +
Sbjct: 64 MPISLVFALIISHINMVRSNELVSFYALGVSKNGLILPPFFIALAVTFLYVGLNCTPFAY 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
D + N KS +++ FI K++ +D I+
Sbjct: 124 ----AYDYQKSIAKNTSFSKSTTDSFLKFEGK----FIYIKELSASQKNAKDVRIFDING 175
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQKF----- 240
+ + AD A N+ +L+ V + + + ++ ++D F
Sbjct: 176 TDLLST-TFADGAKFKNNHWQLQDVNQTLLPKDLRLGQKGLSVQNFDELDALSGFKPKSI 234
Query: 241 ----SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI---AAS 293
+ A S + + + F+ K+ ++ FY L + P + L+
Sbjct: 235 ESANAADGARFSIPDTLDFI-FTFKNEGVELDSVKSAFYSLAIAPFFAPFLILVLYYHLP 293
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ F + +++ ++ ++ F +S ++LP ++PVIL + I
Sbjct: 294 MTGRFF---NLAFASFIFVVITLVIWGVLFVLTRFAQSSVILPEFGIVLPVILLFAYGIY 350
Query: 354 IL 355
+L
Sbjct: 351 LL 352
>gi|304383499|ref|ZP_07365959.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
gi|304335309|gb|EFM01579.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
Length = 634
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/206 (16%), Positives = 69/206 (33%), Gaps = 12/206 (5%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLG---AMILVFVIDLNEIQNQMGELPNYSISRGAVLA 55
M I L + K + + + +++ F+ +I G +
Sbjct: 1 MFRIKKLDIFITKQFGLLFVGTFVICQFVLMMQFLWRWVDILIGKGLALEILAQFFWYMG 60
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
VP Q +P L+ +++VF NL +SEL +A GIS+ Q ++ S L+ I
Sbjct: 61 LMLVP----QALPLAILLSSLIVFGNLGESSELTAIKAAGISLMQSFRSLILLSCLIAIG 116
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+ N + LIQ + + + + + + +K + +
Sbjct: 117 SFYFQNNVGPEANSRLNVLIQSMRHKNPELEIPEGIFY---DGIPQSNLYVQKKNRDTGV 173
Query: 176 WEDFTSITIDKKNKIIHRKDADLAII 201
+ + AD +
Sbjct: 174 LYGIMIYRMTDSYEDAAIILADSGRL 199
Score = 36.4 bits (83), Expect = 7.6, Method: Composition-based stats.
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ L + I A + R + V + + Y + + G+
Sbjct: 376 SKFTLALSCLIFFFIGAPLGA-IIRKGGLGVPVIISVLVYIIYYILDNSGYRMARGGMWT 434
Query: 336 PVAA-ALIPVILT 347
L P +L
Sbjct: 435 VWFGKGLAPAVLI 447
>gi|154148833|ref|YP_001406853.1| permease YjgP/YjgQ [Campylobacter hominis ATCC BAA-381]
gi|153804842|gb|ABS51849.1| permease YjgP/YjgQ [Campylobacter hominis ATCC BAA-381]
Length = 353
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 55/364 (15%), Positives = 122/364 (33%), Gaps = 23/364 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I +Y Y K + + ID+ + N + A+ A
Sbjct: 2 KIFQKYIGWTYFKYFVILFVALEFFYVGIDVLTNLKDFPQSANLGLLYIAITAV----AA 57
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P + I+ FN+ R +E + A+G+ L+ P + ++ + + + N
Sbjct: 58 ITYTLPLSLVFALIIAKFNMIRNNEFISFFALGVPKNSLIIPPFLIALFITFGYISLNNT 117
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I K ++ N + +D + N FI K+ P+ +D +
Sbjct: 118 IFVKAVKFQKNITNFASLN---ENADDLLLKYDGN-----FIYMSKLNPKEKTAKDVIFL 169
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNI--------PIK 233
+ N I + + K V + + + + T
Sbjct: 170 ETNGTNLISKAIS-KKGVYNDKKWLFSDVNTTFLPQNLRLGEQGLTYKFEKNAQKLNNFD 228
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ + + + + YE IK + K+ + + + +I PL M LI
Sbjct: 229 PNTIKNVYDSSQTYTIYEAIKSIKTF-KNQGINVQTLKANLFVMIFFPLFAPFMVLILYY 287
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
SR ++ ++ I+ ++ F +G+++P ++P+ + +
Sbjct: 288 YLPVISRFFNLALLSFAFFIITLCVWGILFVLVRFSLNGVIIPEIGIILPIFVMFCYACY 347
Query: 354 ILLQ 357
+ L+
Sbjct: 348 LFLK 351
>gi|21673570|ref|NP_661635.1| hypothetical protein CT0740 [Chlorobium tepidum TLS]
gi|21646682|gb|AAM71977.1| membrane protein, putative [Chlorobium tepidum TLS]
Length = 452
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/199 (18%), Positives = 70/199 (35%), Gaps = 5/199 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I RY K +L T + + M + + L + ++ + A + +
Sbjct: 12 KIFDRYILKEHLGTFFFAFVTIMFVFILTFLTQFLERLIGK-GLDFRIILEVVALQSAWM 70
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P LV ++ F +L +SEL + RA GISI++L+ P ++ ++ L + N
Sbjct: 71 VGLAVPMAVLVSTVMAFSSLTNSSELTVMRAGGISIYRLVAPVLLAALALSLMMERFNNV 130
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ L D + S+ Q I + I E D
Sbjct: 131 LMPEANYKANALFADITRMKPGLGIDKNAF---SDVIQGYSIMVRDIDNETGELRDIVLY 187
Query: 183 TIDKKNKIIHRKDADLAII 201
+ + + A I
Sbjct: 188 DRGRPD-VRTVIMAARGRI 205
Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/187 (12%), Positives = 66/187 (35%), Gaps = 7/187 (3%)
Query: 172 ENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+ +++ ++ ++ R + I L+ +E R S+ +P
Sbjct: 264 GSKELSAAELLSMAREFRMKDRM--AESSIDKGIAGLRAEIESIRKRSSTSPASSPALLP 321
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ G + E I +M + +S Y +++ + V +I
Sbjct: 322 PAVTGRAIELVDTMIDNATERIGQMRENRESF----YNYMIEYHKKYSLAFACVVFAMIG 377
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
A + + +R A +F + + ++ + + G+LLP + +P ++
Sbjct: 378 APLGV-MARHGGFGAGAALSLFFFVLYWVLLIGGEKIAERGLLLPAISVWLPNVVLAVTG 436
Query: 352 ILILLQK 358
+ ++ +
Sbjct: 437 LFMIYRL 443
>gi|121730353|ref|ZP_01682711.1| bifunctional aspartokinase/homoserine dehydrogenase I (AKI-HDI)
[Vibrio cholerae V52]
gi|121627894|gb|EAX60475.1| bifunctional aspartokinase/homoserine dehydrogenase I (AKI-HDI)
[Vibrio cholerae V52]
Length = 233
Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/188 (12%), Positives = 61/188 (32%), Gaps = 5/188 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADVSD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI EN +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFI----DNIENRKLYNVFVAQ 176
Query: 184 IDKKNKII 191
+ ++ I+
Sbjct: 177 LAPRDSIL 184
>gi|327396302|dbj|BAK13724.1| inner membrane protein YjgP [Pantoea ananatis AJ13355]
Length = 308
Score = 75.3 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/296 (12%), Positives = 100/296 (33%), Gaps = 12/296 (4%)
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ Q I+P + ++ L SE+ + A G+S L+ +V + + + +
Sbjct: 1 MAQLILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMVLMLFTSVVAAVNVI 60
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + Q K N + ++ + + + + + +
Sbjct: 61 WLGPWSSRYQEQVTQNAKANPGAAALAAGQF--QTSSDGSAVLFLENV--KGNQFGHVFL 116
Query: 182 ITIDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ K AD + K ++V G T L ++ F +
Sbjct: 117 AQLRPKGNARPSVVLADSGHMEQKK-DGSQIVTLDKG---TRFEGTALLRDFRITDFTNY 172
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNY--RAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + + + + N + ++ I + ++ M L+ +S+
Sbjct: 173 QAYVGYKQATLDPNDVDQATFATLLSNKTPEFRAELHWRITLVFAVLVMALMVVPLSVVN 232
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + + ++S G G L P + I ++L+I++
Sbjct: 233 PRQGRV-LSMLPAMLLYLIFFLLQSSLRSSGAKGRLDPAIWMWVVNISYLALAIVL 287
>gi|84500989|ref|ZP_00999224.1| Predicted permease [Oceanicola batsensis HTCC2597]
gi|84391056|gb|EAQ03474.1| Predicted permease [Oceanicola batsensis HTCC2597]
Length = 385
Score = 75.3 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/196 (13%), Positives = 69/196 (35%), Gaps = 6/196 (3%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY ++ +F L + + ++ + + + + A +P +I+
Sbjct: 5 DRYLLSQFMVLFGFFSLVLVSIYWINQAVRLFDALIG-DGQTAWVFLEFTALTLPNVIRI 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P T + V L+ SELV+ ++ G S W+L P + +++G+ ++ + +
Sbjct: 64 VLPMATFAAVVYVTNRLSSESELVVMQSTGFSPWRLARPVLWFGVIVGLIMSVMSHFLVP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ + + + ++ +P I ++I + D
Sbjct: 124 VSISRLQERQDDLRQDLTARLLTEGSFL---HPVAGITFYIRQIDADGT-LRDVFFSDRR 179
Query: 186 KKNKIIHRKDADLAII 201
A A +
Sbjct: 180 DARSPQT-FTAARAYL 194
>gi|114799726|ref|YP_760969.1| putative permease [Hyphomonas neptunium ATCC 15444]
gi|114739900|gb|ABI78025.1| putative permease [Hyphomonas neptunium ATCC 15444]
Length = 380
Score = 75.3 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/354 (12%), Positives = 121/354 (34%), Gaps = 19/354 (5%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
+ + L+ L + +++ + + + E S + P +I ++
Sbjct: 7 HLLRQVLQAVLIIVGSLVMVALLAQGLSRTDVILEN-RQSAITYFYIVMLGSPQVIALLL 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P V + +++ SE+V+++A G++ WQ+ +P + +++ + + V +
Sbjct: 66 PLALFVAGVWSLNRIHKDSEIVVAQAAGMTRWQVASPVLRLAMVCLVVHLGVNLWVQPMS 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
++ + + + + + Q ++ + + A+ +
Sbjct: 126 QRAMREAVAEARADLAAALFRAG---QFTSNGERLTFYAR--DQVGGELRGVLISDMTDP 180
Query: 188 NKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ A A + + L+ + Q + F K +
Sbjct: 181 EFPMD-ILARSAALVSVDGQPTLLLRDALSQQLDENQQLSVLEFDQYMFDLSDFMKEDSE 239
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYR---AETQFYFLIVIPLMLVAMTLIAASVSLE--F 298
++ + + ++ F ++ N F N + + P++ + M L+A L F
Sbjct: 240 LVLKASDKFLHELIFLDRKNYFENKEADSFLAEANARLTSPMLNIVMALLAIFAVLGGDF 299
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL-IPVILTISLS 351
SR + I + F+L ++ + + A +P++ I L
Sbjct: 300 SRQGYAKRIGLATGGAIFVL--VLHLALQSAAADDPALNIALWVVPILAGIILG 351
>gi|254718823|ref|ZP_05180634.1| hypothetical protein Bru83_04675 [Brucella sp. 83/13]
gi|265983808|ref|ZP_06096543.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
gi|306838745|ref|ZP_07471579.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
gi|264662400|gb|EEZ32661.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
gi|306406147|gb|EFM62392.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
Length = 402
Score = 75.3 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/361 (14%), Positives = 117/361 (32%), Gaps = 23/361 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L A+ + + + + + N + + ++ +P I ++
Sbjct: 7 YILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTT-SGQTFQTIVQFSSLLIPSAIPLVM 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N +
Sbjct: 66 PFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANYVEPYA 125
Query: 128 --------EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
DL+ G +K ++Q++ + D IG I D
Sbjct: 126 RINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRDPTLD- 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGF 237
I I D+ ++ N +V+ + V + I D + LN D
Sbjct: 185 -LIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGDDFV 243
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHN---YRAETQFYFLIVIPLMLVAMTLIAASV 294
++ + + + R Y LI ++A+ + S
Sbjct: 244 IFAKDRPLTYLLNPDPNDPMLQTRPLTYKAELHRRFTQWIYPLI---FAMIALAIAGDSR 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S +R + ++ + Y + L+P+++ + ++
Sbjct: 301 SHREARVSASFSAISTALLV----YWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356
Query: 355 L 355
L
Sbjct: 357 L 357
>gi|78486088|ref|YP_392013.1| permease YjgP/YjgQ [Thiomicrospira crunogena XCL-2]
gi|78364374|gb|ABB42339.1| YjgP/YjgQ family protein [Thiomicrospira crunogena XCL-2]
Length = 369
Score = 75.3 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/356 (14%), Positives = 121/356 (33%), Gaps = 22/356 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y +K T L +++ F + ++ + + + ++P +
Sbjct: 3 ILDKYLYKELFATFFAVLSVLLLITFGTEATKLL-AVAVEGAIPSTVIMQVLLYKIPPAL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + L+ ++ L + E+V+ ++ GI+ + L T V +
Sbjct: 62 EVILPLVALLSVMLAVGRLYQDQEMVVLQSCGIATSFFQKRVFWFLVPLAFLTAWVSLVV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ LI + + ++P P + + I + + +
Sbjct: 122 TPWSYEQERKLIMEAQTTSPLAA--LVPGKFNPLPNGEGIFYTRSIKSNGDLESVWVRLN 179
Query: 184 IDKKNKIIHRKDADLAIIY--NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D+++ ++ A N K+ L GR + D F+ F
Sbjct: 180 TDERDILLM---APKGKFEWINGKLVL----VLLNGRSYEGLKKGDDFTVREFDRFEGFL 232
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S S + + ++ S E + IV P ++ + L+ +S R
Sbjct: 233 PEIQSTSTAQQVFEIPTSTLWQS-DKPEHEALLQWRIVTPFSILVLGLLGLKMSKSGPRE 291
Query: 302 NQPRIIVAYGIFSGFMLYTI-ITIMKSFGK---SGILLPVAAALIPVILTISLSIL 353
+ +F +LY I ++ +F + + L P ++ + ++
Sbjct: 292 GRFAK-----VFFALVLYVIYNQLLVTFRESISNEALSPWVGLWPIPVVFLMYALY 342
>gi|206890381|ref|YP_002249742.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742319|gb|ACI21376.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 351
Score = 75.3 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/351 (15%), Positives = 121/351 (34%), Gaps = 27/351 (7%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
L + + + V +I+ +++ + +L P ++ IP L+
Sbjct: 12 LLQNIGLSIAFLNAVLIIEKLFKLSKIFASVGIDLPNLVLLILLLQPQLLIFTIPMALLL 71
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
++ + +E+ I G+ + P + ++ FTVL+ +A +G + +
Sbjct: 72 SILLTYGRTQADNEMTIFMVSGMPYKKTFKPAIYIGLIAFFFTVLMSFYLAPTGVSLVRE 131
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI---------TI 184
I + IF+ K P++ ++ I
Sbjct: 132 KILTILAERAPLGLEEGV-FNQGFKDVTIFVKEK---PDSLHLKEVVIFDERKNDTKIVI 187
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
K I +D + N K K + + + +D K +
Sbjct: 188 AKGGLIKKERDNINLSLLNGKAYFNKGLTL----NEVSFKEYIFRLSPNIDPIAKKVSEL 243
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S +E++ K+ ++ + + Y +PL+ + +A S+ L ++ +
Sbjct: 244 ---SLFELVSKI----QTEEVKAIDYKLELYKRFALPLLCIVSVFLAPSLCLIVGKTGRI 296
Query: 305 -RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I V IF+ Y ++ + K+G + +L+PVI+ L+ +
Sbjct: 297 GGITVGLAIFA--FYYILMIYGANLAKAGKVSAEIGSLLPVIVMAILAFTM 345
>gi|22124660|ref|NP_668083.1| hypothetical protein y0747 [Yersinia pestis KIM 10]
gi|45440496|ref|NP_992035.1| hypothetical protein YP_0644 [Yersinia pestis biovar Microtus str.
91001]
gi|51594884|ref|YP_069075.1| membrane protein, permease [Yersinia pseudotuberculosis IP 32953]
gi|108808932|ref|YP_652848.1| hypothetical protein YPA_2941 [Yersinia pestis Antiqua]
gi|108810813|ref|YP_646580.1| hypothetical protein YPN_0648 [Yersinia pestis Nepal516]
gi|145600504|ref|YP_001164580.1| hypothetical protein YPDSF_3250 [Yersinia pestis Pestoides F]
gi|153948230|ref|YP_001402496.1| permease [Yersinia pseudotuberculosis IP 31758]
gi|153997518|ref|ZP_02022618.1| putative membrane protein [Yersinia pestis CA88-4125]
gi|162420063|ref|YP_001608339.1| hypothetical protein YpAngola_A4048 [Yersinia pestis Angola]
gi|165925825|ref|ZP_02221657.1| putative permease [Yersinia pestis biovar Orientalis str. F1991016]
gi|165936618|ref|ZP_02225185.1| putative permease [Yersinia pestis biovar Orientalis str. IP275]
gi|166010128|ref|ZP_02231026.1| putative permease [Yersinia pestis biovar Antiqua str. E1979001]
gi|166214282|ref|ZP_02240317.1| putative permease [Yersinia pestis biovar Antiqua str. B42003004]
gi|167398727|ref|ZP_02304251.1| putative permease [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167420598|ref|ZP_02312351.1| putative permease [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167423158|ref|ZP_02314911.1| putative permease [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|170025893|ref|YP_001722398.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
YPIII]
gi|186893894|ref|YP_001871006.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
PB1/+]
gi|218930456|ref|YP_002348331.1| hypothetical protein YPO3440 [Yersinia pestis CO92]
gi|229839084|ref|ZP_04459243.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229896572|ref|ZP_04511739.1| conserved inner membrane protein [Yersinia pestis Pestoides A]
gi|229899647|ref|ZP_04514788.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229901016|ref|ZP_04516140.1| conserved inner membrane protein [Yersinia pestis Nepal516]
gi|270489196|ref|ZP_06206270.1| inner membrane family protein [Yersinia pestis KIM D27]
gi|294505144|ref|YP_003569206.1| hypothetical protein YPZ3_3035 [Yersinia pestis Z176003]
gi|21957469|gb|AAM84334.1|AE013676_7 hypothetical protein y0747 [Yersinia pestis KIM 10]
gi|45435353|gb|AAS60912.1| putative membrane protein [Yersinia pestis biovar Microtus str.
91001]
gi|51588166|emb|CAH19772.1| putative membrane protein, permease [Yersinia pseudotuberculosis IP
32953]
gi|108774461|gb|ABG16980.1| membrane protein [Yersinia pestis Nepal516]
gi|108780845|gb|ABG14903.1| putative membrane protein [Yersinia pestis Antiqua]
gi|115349067|emb|CAL22029.1| putative membrane protein [Yersinia pestis CO92]
gi|145212200|gb|ABP41607.1| membrane protein [Yersinia pestis Pestoides F]
gi|149289155|gb|EDM39235.1| putative membrane protein [Yersinia pestis CA88-4125]
gi|152959725|gb|ABS47186.1| putative permease [Yersinia pseudotuberculosis IP 31758]
gi|162352878|gb|ABX86826.1| putative permease [Yersinia pestis Angola]
gi|165915267|gb|EDR33877.1| putative permease [Yersinia pestis biovar Orientalis str. IP275]
gi|165922437|gb|EDR39614.1| putative permease [Yersinia pestis biovar Orientalis str. F1991016]
gi|165991035|gb|EDR43336.1| putative permease [Yersinia pestis biovar Antiqua str. E1979001]
gi|166204514|gb|EDR48994.1| putative permease [Yersinia pestis biovar Antiqua str. B42003004]
gi|166961404|gb|EDR57425.1| putative permease [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167051231|gb|EDR62639.1| putative permease [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167057328|gb|EDR67074.1| putative permease [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169752427|gb|ACA69945.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
YPIII]
gi|186696920|gb|ACC87549.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
PB1/+]
gi|229682355|gb|EEO78447.1| conserved inner membrane protein [Yersinia pestis Nepal516]
gi|229687139|gb|EEO79214.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695450|gb|EEO85497.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229700350|gb|EEO88382.1| conserved inner membrane protein [Yersinia pestis Pestoides A]
gi|262367137|gb|ACY63694.1| hypothetical protein YPD8_3022 [Yersinia pestis D182038]
gi|270337700|gb|EFA48477.1| inner membrane family protein [Yersinia pestis KIM D27]
gi|294355603|gb|ADE65944.1| hypothetical protein YPZ3_3035 [Yersinia pestis Z176003]
Length = 364
Score = 75.3 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 54/367 (14%), Positives = 123/367 (33%), Gaps = 27/367 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNVVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ ++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMNACGMGKKSLIMAALILALFTSGLAAINTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K ++ K N + ++ +FIG +
Sbjct: 121 GPWSSKHQDVVLNDAKANPSLAALGGGQFKSSNDGNSALFIG----NVAGKEFNRVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKM 234
+ AD + + V L K Y+ + D + I
Sbjct: 177 LRPNGNQRPSVVVADSGHMSELPDGSQMVILNKGTRYEGTALLRDFRITDFVDYQAVIGH 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
Q+ S S E+ + ++ +F++ + + + +V M L+ +
Sbjct: 237 KQVQQSSNGADQMSMKELWRSQEPDARA----------EFHWRLTLIVSVVIMALLVVPL 286
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S+ R + + + + + + + + ++S +G L P+ + + L++ I
Sbjct: 287 SVVNPRQGRV-LSMLPAMLLYLIFFLLQSSLRSKAGNGQLDPLV--WMWAVNGAYLALAI 343
Query: 355 LLQKEDG 361
+L DG
Sbjct: 344 ILNLWDG 350
>gi|86149085|ref|ZP_01067317.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88597305|ref|ZP_01100540.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
84-25]
gi|218561972|ref|YP_002343751.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|85840443|gb|EAQ57700.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88190366|gb|EAQ94340.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
84-25]
gi|112359678|emb|CAL34464.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|284925585|gb|ADC27937.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni IA3902]
gi|315928386|gb|EFV07700.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315930530|gb|EFV09573.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
305]
Length = 352
Score = 75.3 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 55/359 (15%), Positives = 120/359 (33%), Gaps = 22/359 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI-WQLLNPFVVGSILLGIFTVLVINP 122
++P + +V ++ R +E V A+G+S + +L PF+ I+ L
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNF-- 116
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ D + NG +++ +N F+ KI + ++
Sbjct: 117 ---TSFAYANDYKRNILKNGTIMNQSGEVFLKFNNN----FVYISKINNGQNSAQNIKIF 169
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQ--- 238
I+ N + A A + L+ + + + + ++ +
Sbjct: 170 NINDLN-LSSFASAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFK 228
Query: 239 -KFSEQFASRSFYEIIKKMSFSN--KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
K E AS S Y I + K+ + + Y + P + LI
Sbjct: 229 PKIIEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFFAPFLMLIMYYFF 288
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+R + M++ ++ ++ ++ ++ ++P+I+ LS +
Sbjct: 289 PVIARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYM 347
>gi|23501574|ref|NP_697701.1| hypothetical protein BR0687 [Brucella suis 1330]
gi|254701470|ref|ZP_05163298.1| hypothetical protein Bsuib55_11511 [Brucella suis bv. 5 str. 513]
gi|254704017|ref|ZP_05165845.1| hypothetical protein Bsuib36_08829 [Brucella suis bv. 3 str. 686]
gi|256060812|ref|ZP_05450972.1| hypothetical protein Bneo5_10667 [Brucella neotomae 5K33]
gi|261324804|ref|ZP_05964001.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
gi|261752013|ref|ZP_05995722.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
gi|261754672|ref|ZP_05998381.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
gi|306845288|ref|ZP_07477864.1| permease YjgP/YjgQ family protein [Brucella sp. BO1]
gi|23347487|gb|AAN29616.1| membrane protein, putative [Brucella suis 1330]
gi|261300784|gb|EEY04281.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
gi|261741766|gb|EEY29692.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
gi|261744425|gb|EEY32351.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
gi|306274447|gb|EFM56254.1| permease YjgP/YjgQ family protein [Brucella sp. BO1]
Length = 402
Score = 75.3 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 51/361 (14%), Positives = 117/361 (32%), Gaps = 23/361 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L A+ + + + + + N + + ++ +P I ++
Sbjct: 7 YILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTT-SGQTFQTIVQFSSLLIPSAIPLVM 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N +
Sbjct: 66 PFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANYVEPYA 125
Query: 128 --------EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
DL+ G +K ++Q++ + D IG I D
Sbjct: 126 RINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRDPTLD- 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGF 237
I I D+ ++ N +V+ + V + I D + LN D
Sbjct: 185 -LIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGDDFV 243
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHN---YRAETQFYFLIVIPLMLVAMTLIAASV 294
++ + + + R Y LI ++A+ + S
Sbjct: 244 IFAKDRPLTYLLNPDPNDPMLQTRPLTYKAELHRRFTQWIYPLI---FAMIALAIAGDSR 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S +R + ++ + Y + L+P+++ + ++
Sbjct: 301 SHREARVSASFSAISTALLV----YWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356
Query: 355 L 355
L
Sbjct: 357 L 357
>gi|255034852|ref|YP_003085473.1| permease YjgP/YjgQ family protein [Dyadobacter fermentans DSM
18053]
gi|254947608|gb|ACT92308.1| permease YjgP/YjgQ family protein [Dyadobacter fermentans DSM
18053]
Length = 498
Score = 75.3 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/249 (13%), Positives = 83/249 (33%), Gaps = 21/249 (8%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITL 72
++ T + ++ + + +++ ++ + +Y + VP +P L
Sbjct: 16 FVITMSVVVFVFLMRIMIFYIDDFVSKDLNVMDY-AQLFFFFSLITVPTA----LPLAML 70
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
+ +++ F NL EL ++ GIS+ + + P + ++ + +F+ + ++ G
Sbjct: 71 LSSLMAFGNLGEFFELTAIKSAGISVVRAMAPLFIVAVGISVFSFYFNDRVSPWANLKGY 130
Query: 133 DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI---TIDKKNK 189
L+ K K + ++ +K+ EN + +
Sbjct: 131 SLLYDIKTTKATLKIKEGIFY--NDLPGYSIKVDEKL--ENGKMTGMVIYKHNSRSYEFG 186
Query: 190 IIHRKDADLAII----YNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
AD + N + +L Y + ++ P G Q
Sbjct: 187 NTEIILADSGRMYSINENRYLVIELYNGTRYTDEQGSASSRPVYISSP---AGTQTPYSN 243
Query: 244 FASRSFYEI 252
F +SF
Sbjct: 244 FNRQSFRHY 252
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 1/129 (0%)
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
T + + + + AS S IK ++ + + E + + L +
Sbjct: 332 TRPVSDSLKKEILTNTKAASNSMLSYIKSQQDYLQTKLKDASKYELEKHHKYTQALSCLI 391
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
M LI A + + + V I +LY + + K G++ A + +
Sbjct: 392 MFLIGAPLGA-IIKKGGFGVPVLVSILFFILLYVLTNQGDKWVKEGLVAVPVGAWMANTI 450
Query: 347 TISLSILIL 355
+ +
Sbjct: 451 LFLTGMYFI 459
>gi|323492969|ref|ZP_08098107.1| hypothetical protein VIBR0546_19372 [Vibrio brasiliensis LMG 20546]
gi|323312800|gb|EGA65926.1| hypothetical protein VIBR0546_19372 [Vibrio brasiliensis LMG 20546]
Length = 367
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/353 (11%), Positives = 115/353 (32%), Gaps = 20/353 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L ++ L ++ + + S A +P +
Sbjct: 2 IIVRYLIRETLKSQLAIFFILFLVFLSQKLIKVLADASD-GDIPASLVMHYVALSMPSMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ G+
Sbjct: 61 LLMLPLSLFLGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLAVITGVIAGFNSFVF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + L ++ + + P + + +
Sbjct: 121 SPYSQDKLVQLQEEVEAENSVDLLKKGHF--QGTPDGSSVVFID--DIDGKQLKHVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ I+ ++ + + + +++ Y+ +D T + + G
Sbjct: 177 MRPRDSILPSVSFSQSGEVKELSDGRQVIRMYDGTRYEGVPTRVDYMVTKFDQYEGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + ++ M + RA+ + + I + + + +T++ +S
Sbjct: 237 RDVKRKGRDWEAIPTLELMKN-------PDPRAQAELQWRISLVVCIPLLTMLVVPLSAV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
R + + I + I+ KS + G + + P+ + L
Sbjct: 290 NPRQGRFAKM-GPAILIYLAYFLSISATKSALEDGSIPAIIGMW-PINAALLL 340
>gi|87306756|ref|ZP_01088903.1| hypothetical protein DSM3645_10492 [Blastopirellula marina DSM
3645]
gi|87290935|gb|EAQ82822.1| hypothetical protein DSM3645_10492 [Blastopirellula marina DSM
3645]
Length = 380
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/371 (14%), Positives = 117/371 (31%), Gaps = 44/371 (11%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y K LL ++L+ V + G P+ + VP +++ I
Sbjct: 7 YVVWEVFKIFFLCLLATVLLMVVGGGVNEGLKKGLPPSIILGMMPYF----VPEMLRFTI 62
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P L VF ++ ++E+V ++ GI+ +++ P +V + L T + + A
Sbjct: 63 PGCLLFSICTVFGRMSASNEIVALKSAGINPIEIIWPVLVATYALSFVTFGLYDVCAGWS 122
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWEDFTSITIDK 186
+I Q + + F + K + I T T
Sbjct: 123 RPNMHRIIIQ-----SLDDTAYSMLRTQKSFSMQGFSVRVKGVDDRRLIEPFITVQT--P 175
Query: 187 KNKIIHRKDADLAIIY-------------------NDKVKLKKVVEY-----QYGRIPID 222
A+ A + D +V + Q G + D
Sbjct: 176 NGGPEFTLTAEEAELESNPETGALQVVCRNSFMEYGDGTNFSQVEPFVHQITQLGTLDQD 235
Query: 223 KNSTTLN------IPIKMDGFQKFSEQ-FASRSFYEIIKKMSFSNKSNIFHNYRAETQFY 275
NS + IP ++ K E + + ++++ + + +R + +
Sbjct: 236 LNSASPAALTLRHIPAQIAREAKLLEDTINALHIGGDPEAIAYAAEGHQKRLWRLQAERQ 295
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ L + V++ S+ + + Y ++ ++ + G+L
Sbjct: 296 RRLSNGLGCFCFACVGIPVAMWRRTSDNVTTFFLCFLPILGVYYPLLVTGETMARDGVLA 355
Query: 336 PVAAALIPVIL 346
P + + ++
Sbjct: 356 P-YSVWLADVV 365
>gi|29347827|ref|NP_811330.1| hypothetical protein BT_2417 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29339729|gb|AAO77524.1| putative permease [Bacteroides thetaiotaomicron VPI-5482]
Length = 616
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 74/234 (31%), Gaps = 5/234 (2%)
Query: 18 LYFLLGAMILVFVIDLNEIQNQMGELPNYSI--SRGAVLAATRVPLIIQQIIPFITLVVN 75
+ F+ I +F+ + + + EL + S A ++ +P L+ +
Sbjct: 1 MLFIGTFFICLFIFMMQFLWRYVDELVGKGLDMSVIAQFFFYSALTLVPISLPLAILLAS 60
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
++ F N EL+ +A GIS+ +++ P L + N + + LI
Sbjct: 61 LITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVAVSFYFQNVVGPIAQTKLYTLI 120
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKD 195
K + + + K + + D + + H
Sbjct: 121 ISMKQKSPELDIPEGVFYSEIPDYN---LKIAKKNRKTGMMYDVLIYNLKDGFENAHIIY 177
Query: 196 ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
AD + K + G + + S ++ ++F E+ F
Sbjct: 178 ADSGRMEMTADKQHLWLHLYSGDLFENLRSQSMKSQNVPYRREEFREKHTIIEF 231
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 1/102 (0%)
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
I S++ S+ + + E +++ I I L + I A + R + V +
Sbjct: 336 INFKSYTMGSHDYSMRKHEIEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSV 394
Query: 313 FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I + G + + L +
Sbjct: 395 MVFIIYYIIDNTGYKMARDGRWVVWMGVWTSSAVLAPLGAFL 436
>gi|313680813|ref|YP_004058552.1| permease yjgp/yjgq family protein [Oceanithermus profundus DSM
14977]
gi|313153528|gb|ADR37379.1| permease YjgP/YjgQ family protein [Oceanithermus profundus DSM
14977]
Length = 346
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/345 (13%), Positives = 107/345 (31%), Gaps = 15/345 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY + L L ++L+ L E+ + +S A RVP
Sbjct: 2 NTLSRYLLREVGAYLLGGLAVVVLLLLGGVLFEVLAPLLARGADPLS-IGQYLAHRVPEA 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + +P L ++ + SEL + A GI ++L V LL + +
Sbjct: 61 LVRGLPIAYLFALLLALSRMAEDSELKVLLASGIPRERVLGVLVGFGALLALVGFVAGES 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ ++++ + + + + + I ++ + D +
Sbjct: 121 WVPRELQRANQVLREAILAKPRALLQPGTFFRDAYGR---TIYVGQVDGQGF--GDVRVL 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ A ++ L + + + + ++
Sbjct: 176 SEG------EVLTAKRGRFEPGRLVLDAGMRVTFDGSRPRTITEFERGLLPLEDLAVSPP 229
Query: 243 Q-FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
A E+ ++++ K + T ++ P VA + A +
Sbjct: 230 TKPADLPLAELRRRIAE-YKKFGRPYHAEATAYWRKWAEPAASVA-FALFAVALAFWMLG 287
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
+ + + F Y ++ + G+ G+L P AA P +L
Sbjct: 288 GSRSLGMVGVVTLTFFYYATWSVFRIMGEQGVLAPWFAAWGPDLL 332
>gi|294670275|ref|ZP_06735168.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291308012|gb|EFE49255.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 370
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/357 (11%), Positives = 119/357 (33%), Gaps = 23/357 (6%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
F K T + + + ++ + + + + A++ + + ++
Sbjct: 7 FVKELTFTAIGIFVVILAVLVSTQAINLLGRAADGRVAVDAVAALIGFWTL-GMTPLLLV 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ + V R SE+ + + G+S+ Q + P + ++ + + E
Sbjct: 66 LTAYISTLTVLTRFWRDSEMSVWLSCGLSLRQWVRPVLSFALPFAALVAAMQLSVLPWAE 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ + K + + + + ++ + I ++ D K
Sbjct: 126 LRSREFAEILKQKQELSMVEAGEFRTLGKKNGRVY-FVGTFDTGSGIMKNLFLREQDDKG 184
Query: 189 KIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLN---IPIKMDGFQKFSEQ 243
+ + A + ++K L+ Y+YG IP + + ++ + + + K
Sbjct: 185 R-ENIIFAKEGRFSLTDNKRTLELTQGYRYGGIPGEADYNQVSFEHLNLIISATPKIINP 243
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
R K + N + + + + +PL + ++++A +S R+
Sbjct: 244 IDHRRTIPTAKLI-------GSDNPQHRAELMWRLSLPLAALILSILAVPLSYFNPRTGH 296
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL---IPVILTISLSILILLQ 357
I + I +F ++ I +P+ + + + +ILL+
Sbjct: 297 TYN-----ILFAIGFFLIYQNGLTFLRNAIENSKLGFWTGFLPIHIIMLAAAVILLR 348
>gi|121612521|ref|YP_001000023.1| hypothetical protein CJJ81176_0335 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|87250256|gb|EAQ73214.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
81-176]
Length = 352
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 56/359 (15%), Positives = 121/359 (33%), Gaps = 22/359 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI-WQLLNPFVVGSILLGIFTVLVINP 122
++P + +V ++ R +E V A+G+S + +L PF+ I+ L
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNF-- 116
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ D + NG +++ +N F+ KI + ++
Sbjct: 117 ---TSFAYANDYKRNILKNGTIMNQSGEVFLKFNNN----FVYISKINNGQNSAQNIKIF 169
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQ--- 238
I+ N + A A + L+ + + + + ++ +
Sbjct: 170 NINDLN-LSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFK 228
Query: 239 -KFSEQFASRSFYEIIKKMSFSN--KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
K E AS S Y I + K+ + + Y + P + LI
Sbjct: 229 PKIIEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFFAPFLMLIMYYFF 288
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+R I+ M++ ++ ++ ++ ++ ++P+I+ LS +
Sbjct: 289 PVIARFFNLAIVTFVTFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYM 347
>gi|260592583|ref|ZP_05858041.1| putative permease [Prevotella veroralis F0319]
gi|260535353|gb|EEX17970.1| putative permease [Prevotella veroralis F0319]
Length = 644
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/209 (15%), Positives = 77/209 (36%), Gaps = 18/209 (8%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAV----- 53
M I L + K + + F I +FV+ + + + +L +S +
Sbjct: 1 MFRIKKLDIFIAKQFG---MLFAGTFFISLFVLMMQFLWRYVDDLIGKGLSMEVLGQFFW 57
Query: 54 -LAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
++ VP Q +P L+ +++ + NL +SEL ++ GIS+ Q +V S+++
Sbjct: 58 YMSLMMVP----QALPLAILLSSLIAYGNLGESSELTAIKSAGISLIQSFRGLIVISVII 113
Query: 113 GIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE 172
+ N I +K L+ + + + + + + ++ +
Sbjct: 114 AGASFYFQNNIGPMAQKNMAQLLISMRHKSPELEIPEGVFY---DGIPQTNLYVERKDMK 170
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAII 201
+ + + + AD ++
Sbjct: 171 SGHLYNIMVYRMTDSYEDQAIILADSGML 199
Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 7/87 (8%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ E +F I L+ + I A + R I + + + Y +
Sbjct: 368 RQHEIEFINKFTISLICIVFFFIGAPLGA-IIRKGGLGIPIIVSVLVFIVYYILDNTGYR 426
Query: 328 FGKSGILLPV------AAALIPVILTI 348
+ G A L+P+
Sbjct: 427 MSRQGDWAIWFGRGLSMAVLVPMAAFF 453
>gi|325103111|ref|YP_004272765.1| permease YjgP/YjgQ family protein [Pedobacter saltans DSM 12145]
gi|324971959|gb|ADY50943.1| permease YjgP/YjgQ family protein [Pedobacter saltans DSM 12145]
Length = 476
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/250 (15%), Positives = 81/250 (32%), Gaps = 7/250 (2%)
Query: 1 MPGILWRYFFKYYLKTTL-YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M I K ++K F + +L+ + I + +G+ + L
Sbjct: 1 MKKI-HLLIVKAFIKPFFVTFFIVMFVLLMLFLFKYIDDLIGK--GFEWYVILQLLGYAA 57
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
+ +P L+ +I+ F NL ELV ++ GIS+ + + P + L I +
Sbjct: 58 ATNVAMALPLAVLLSSIMTFGNLGENYELVAIKSAGISLQRAMAPLFIMVTGLSIAAFIF 117
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ + L+ ++ + + +N I ++ + +D
Sbjct: 118 SDYMLPVANLKMGSLLYDVRNQKAAFLIEEGVF---NNSIPGYSIRVEQKDKDGKTLKDV 174
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
K + + AD +Y + V+ ++G + P + K
Sbjct: 175 VIYDHTKGSGNTNVLMADTGEMYKTDDEKYLVLVLKHGVRYEESAGQRTYNPRERLVRYK 234
Query: 240 FSEQFASRSF 249
F E
Sbjct: 235 FDETMQKFDL 244
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 1/110 (0%)
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
RS E I+ S + R ++ + + + + I A + R
Sbjct: 339 TVRSVKETIETRSTETQDLFKVITRYIIEYNRKFTLSVSCLVLFFIGAPLGA-IIRKGGL 397
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ V + + + I TI + + G + P+ I + + L + +
Sbjct: 398 GLPVVVSVIFFLIYHIISTIGEKMARDGTISPLLGMWIAIFVLTPLGLFL 447
>gi|83945296|ref|ZP_00957645.1| hypothetical protein OA2633_00975 [Oceanicaulis alexandrii
HTCC2633]
gi|83851466|gb|EAP89322.1| hypothetical protein OA2633_00975 [Oceanicaulis alexandrii
HTCC2633]
Length = 375
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/285 (12%), Positives = 100/285 (35%), Gaps = 18/285 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY F+ L L + L + + M E + + +P +I +
Sbjct: 6 RYTFRQALWPFLGAMAALTGLAVLTQSLSNLDLMAERGE-TALVLITITVLAMPQVIALL 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + + L SEL ++ A G+S +Q ++PF+ +I + + +++ + +
Sbjct: 65 LPIAVFLAVAIALNRLTSDSELTVAAAAGMSRFQRVSPFLRLAIYVVLVNLVINLFVQPA 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ + + + + ++ P D + + ++ + D +D
Sbjct: 125 SFRLMRQQLFEIRTDLAASFMREGEFV----PLGDQVTFYVREISDDSVLNDV--FIMDD 178
Query: 187 KNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ A I + L+ V Q + + N + + +++ F +
Sbjct: 179 RTGQSAAYAARRGRIAATDRGPVMLLEDGVRTQVDQSGVLTNLSFDSTKVELTLFVDNTA 238
Query: 243 QFASRS----FYEIIK-KMSFSNKSNIFHNYRAETQFYFLIVIPL 282
+ E+++ + ++ R + ++ + PL
Sbjct: 239 SLFFKESDKYLPELLRPTPADIARAGG--KGRLYAEGHYRLSAPL 281
>gi|37681090|ref|NP_935699.1| permease [Vibrio vulnificus YJ016]
gi|37199840|dbj|BAC95670.1| predicted permease [Vibrio vulnificus YJ016]
Length = 366
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/357 (12%), Positives = 109/357 (30%), Gaps = 23/357 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + S + A +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFLSQQFISVLADASD-GDIPASLIMSIVALNMPSMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLIQAALYLAVITSGVAAFNSLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L +Q + P + + ++ +
Sbjct: 121 SPWSMDRVEQLTEQVAAENSVDLLKKGQF--QFTPDRSSVVFID--DIKDKQLSNVFVAQ 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I+ + N +L + + + + F+++
Sbjct: 177 LMPRDSIL-----PSVMFANGGEVKELSDGRQIISMKQGTRYEGVPTRVEYMITEFEQYD 231
Query: 242 EQFASRSF------YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
RS ++ I + N +AE Q+ + + + L+ M +I +S
Sbjct: 232 GLIGQRSVKQRGRDWDAIPTLELIG--NPDPEAQAELQWRVSLFVCIPLLTMLVI--PLS 287
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
R + + I + I+ KS + G + L + ++I
Sbjct: 288 AVNPRQGRFAKM-GPAILIYLAYFLSISATKSALEEGDISASIGMWPINGLLLLVAI 343
>gi|91774577|ref|YP_544333.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
gi|91708564|gb|ABE48492.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
Length = 361
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/361 (12%), Positives = 126/361 (34%), Gaps = 27/361 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATR-VPLII 63
R + + T + L +V + G L + +I+ + + +P+++
Sbjct: 5 RSLLQELVTTAIGGFLVLFGIVIAQRVAYYIGVAAKGSLASDAINTLLGFSMLKFLPMML 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ L+ +R SE+V+ + G + + P + + + + L+ +
Sbjct: 65 SLTLFLAVLL----TLSRWHRDSEMVVWFSAGQGLSSWIRPVLTFGLPVIVVIALLSLFV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + Q K + + + + + F+ + +I ++ +
Sbjct: 121 TPWATGKGAEFRDQLKSRDELASISPGVFKESRHADRVFFV--ESFDELGNIVKNIFVQS 178
Query: 184 IDKKNK---IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN---IPIKMDGF 237
+ + + R + A +D + ++ Y+ + + T I I+
Sbjct: 179 MQHQKLGIIVAARGHRETAENGDDFLVMQNGRRYEGTPNTAEYSITEFERYAIRIEPAEV 238
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q+ S++ E+ + H+ + + + + IP+ + L+A +S
Sbjct: 239 QQQPPNTQSKNSLELFNE----------HSPDSIAELQWRLAIPISAFVLILLAIPLSFV 288
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
RS + ++ + + +++IM+++ G + + PV L +
Sbjct: 289 DPRSGRSANLM-MALLIYIVYNNLLSIMQAWLSQGKVPAMVGLW-PVHAFFLLLTFWMFY 346
Query: 358 K 358
+
Sbjct: 347 R 347
>gi|197336301|ref|YP_002155170.1| permease YjgP/YjgQ family protein [Vibrio fischeri MJ11]
gi|197317791|gb|ACH67238.1| permease YjgP/YjgQ family protein [Vibrio fischeri MJ11]
Length = 344
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/335 (12%), Positives = 109/335 (32%), Gaps = 30/335 (8%)
Query: 33 LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
+ + + L +P + ++P + ++ F L SE+ +
Sbjct: 5 FISVLADASD-GDIPGGLILSLVGLNMPAMGLLMLPLSIFIGILLTFGRLYAESEITVMN 63
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
A G+ L+ + +++ G ++ ++ L++ + + +
Sbjct: 64 ATGMGNSILIRAALYLALITGAAATFNSLWLSPWSQEKTTQLMETVESDAGVDLLQKGQF 123
Query: 153 MQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAI---IYNDK--V 206
+ + + +FI + + AD + + + + +
Sbjct: 124 QRSPDGKAVVFI-DDISNKNGKELRHIFLAQPVPHDSLRPSVLVADKGVVKELKDGRQVL 182
Query: 207 KLKKVVEYQYGRIPID---KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN 263
+L+ Y+ +D N + + I ++ + + +++K+ K+
Sbjct: 183 ELQDGTRYEGIPTRLDYLESNFKSYEVLIGQKEVKEKRRDWDAIPTLDLMKRPELEAKAE 242
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
+ + +I IPL+ + + ++A V+ R + V LY
Sbjct: 243 ------LQWRISLIICIPLLTMVVVPLSA-VNPRQGRFAKLGPAVL--------LYLAYF 287
Query: 324 IMKSFGKS----GILLPVAAALIPVILTISLSILI 354
+ S GKS G L P + + I++
Sbjct: 288 LSLSAGKSAIEDGGLAPSIGLWAINATLLLVGIIL 322
>gi|59711021|ref|YP_203797.1| inner membrane protein [Vibrio fischeri ES114]
gi|59479122|gb|AAW84909.1| conserved inner membrane protein [Vibrio fischeri ES114]
Length = 344
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/335 (12%), Positives = 109/335 (32%), Gaps = 30/335 (8%)
Query: 33 LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
+ + + L +P + ++P + ++ F L SE+ +
Sbjct: 5 FISVLADASD-GDIPGGLILSLVGLNMPAMGLLMLPLSIFIGILLTFGRLYAESEITVMN 63
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
A G+ L+ + +++ G ++ ++ L++ + + +
Sbjct: 64 ATGMGNSILIRAALYLALITGAAATFNSLWLSPWSQEKTTQLMETVESDAGVDLLQKGQF 123
Query: 153 MQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAI---IYNDK--V 206
+ + + +FI + + AD + + + + +
Sbjct: 124 QRSPDGKAVVFI-DDISNKNGKELRHIFLAQPVPHDSLRPSVLVADKGVVKELKDGRQVL 182
Query: 207 KLKKVVEYQYGRIPID---KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSN 263
+L+ Y+ +D N + + I ++ + + +++K+ K+
Sbjct: 183 ELQDGTRYEGIPTRLDYLESNFKSYEVLIGQKEVKEKRRDWDAIPTLDLMKRPELEAKAE 242
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
+ + +I IPL+ + + ++A V+ R + V LY
Sbjct: 243 ------LQWRISLIICIPLLTMVVVPLSA-VNPRQGRFAKLGPAVL--------LYLAYF 287
Query: 324 IMKSFGKS----GILLPVAAALIPVILTISLSILI 354
+ S GKS G L P + + I++
Sbjct: 288 LSLSAGKSAIEDGGLAPSIGLWAINATLLLVGIVL 322
>gi|327314112|ref|YP_004329549.1| permease [Prevotella denticola F0289]
gi|326944181|gb|AEA20066.1| permease, YjgP/YjgQ family [Prevotella denticola F0289]
Length = 645
Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/209 (16%), Positives = 78/209 (37%), Gaps = 18/209 (8%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAV----- 53
M I L + + + + F I +FV+ + + + +L +S +
Sbjct: 2 MFRIRKLDIFIARQFG---MLFAGTFFISLFVLMMQFLWRYVDDLIGKGLSMDVLGQFFW 58
Query: 54 -LAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
++ VP Q +P L+ +++ + NL +SEL ++ GIS+ Q +V S+L+
Sbjct: 59 YMSLMMVP----QALPLAILLSSLISYGNLGESSELTAIKSAGISLVQSFRGLIVISVLI 114
Query: 113 GIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPE 172
+ N + S +K L+ K + + + + + + +K +
Sbjct: 115 ACGSFYFQNNVGPSAQKHIAQLLISMKQKSPELEIPEGIFY---DGIPNTNLYVEKKDLK 171
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAII 201
+ + + AD ++
Sbjct: 172 TGHLYNIMVYRMTDSYEDQAIILADSGML 200
>gi|254360524|ref|ZP_04976673.1| possible inner membrane protein [Mannheimia haemolytica PHL213]
gi|261492350|ref|ZP_05988912.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496136|ref|ZP_05992544.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
str. OVINE]
gi|153091064|gb|EDN73069.1| possible inner membrane protein [Mannheimia haemolytica PHL213]
gi|261308238|gb|EEY09533.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261312033|gb|EEY13174.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 369
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/309 (15%), Positives = 100/309 (32%), Gaps = 20/309 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ L L +++ F L + + L +P +
Sbjct: 2 ILSRYLTKEIFKSQLAILFILLLIFFCQQLVRVLSSAVS-GKVPADLVVSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ SE+ + RA GI L+ + SI V + +
Sbjct: 61 QLMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLVKVAMFLSIFTTALAVYNVFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+++ + K N +M + KI EN+ D
Sbjct: 121 TPWAINKQSEMLAEAKANPRFAALSAGQFMSAGG----YVLFIDKI--ENNSLNDIYVFQ 174
Query: 184 IDKKNKII-HRKDADLAIIY---NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+++ K A+ + N L ++ P + ++ F+
Sbjct: 175 PEQQKKNKPSVVVAESGTLQGLPNGDQVLTLAESKRFEGTPQSADF-------RISHFEN 227
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNY--RAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+S + K + ++ + A+ + ++ + + L + M L+A +S
Sbjct: 228 YSAYLGYQDVESDEKLVQRADFKKLMETKTPEAKAELHWRLALILAVPLMALLAVPMSSV 287
Query: 298 FSRSNQPRI 306
R +
Sbjct: 288 NPRQGRFAK 296
>gi|118594056|ref|ZP_01551403.1| permease YjgP/YjgQ [Methylophilales bacterium HTCC2181]
gi|118439834|gb|EAV46461.1| permease YjgP/YjgQ [Methylophilales bacterium HTCC2181]
Length = 372
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/367 (13%), Positives = 120/367 (32%), Gaps = 29/367 (7%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L R F L T L + VI G +PN +I V + +
Sbjct: 7 LTRELFFTSLSTILVLSGIVVAQRAVIVFRFAAR--GSIPNDAIDTVLVFNLLK---HMP 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++ + ++ + SE++I + G+ ++ L+ P ++ + I + I+
Sbjct: 62 LLLSLTVFITILITLSRWYKDSEMIIWFSSGLGLYSLIKPIILFCFPIIILIASLSLYIS 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + K + + + + + +I L S+
Sbjct: 122 PWAVQKAEEYKTGLKSRDEIATITPGTFKESKSNNRIFYIEGFSSLGSKVKNIFIQSMQN 181
Query: 185 DKKNKII----HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT-----LNIPIKMD 235
K I+ R + + N+ + LK Y+ + ++TT + +
Sbjct: 182 GKLGVIVSNEGERIEDNN---NNNYIVLKNGRRYEGIANSKEFSTTTFDEYGILMEKTPK 238
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + + N SN + + + I +PL + + +A +S
Sbjct: 239 NNLNVGAKAGIIEATPTLALIFNQNDSN---RKQFLAELMWRISLPLSTIFLIFLAIPLS 295
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITI---MKSFGKSGILLPVAAALIPV-ILTISLS 351
+R+ + ++ + F+ +S G + +PV ++ ++
Sbjct: 296 FINNRTGRSFNMIV----AVFIFVIYNNFLGIFQSLISVGKIPLWLG-FLPVHLVFGLVA 350
Query: 352 ILILLQK 358
+L ++
Sbjct: 351 FYLLHRR 357
>gi|320155252|ref|YP_004187631.1| putative permease [Vibrio vulnificus MO6-24/O]
gi|319930564|gb|ADV85428.1| predicted permease [Vibrio vulnificus MO6-24/O]
Length = 366
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/357 (12%), Positives = 109/357 (30%), Gaps = 23/357 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + S + A +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFLSQQFISVLADASD-GDIPASLIMSIVALNMPSMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLIQAALYLAVITSGVAAFNSLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L +Q + P + + ++ +
Sbjct: 121 SPWSMDRVEQLTEQVAAENSVDLLKKGQF--QFTPDRSSVVFID--DIKDKQLSNVFVAQ 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I+ + N +L + + + + F+++
Sbjct: 177 LMPRDSIL-----PSVMFANGGEVKELSDGRQIISMKQGTRYEGVPTRVEYMITEFEQYD 231
Query: 242 EQFASRSF------YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
RS ++ I + N +AE Q+ + + + L+ M +I +S
Sbjct: 232 GLIGQRSVKQRGRDWDAIPTLELIG--NPDPEAQAELQWRVSLFVCIPLLTMLVI--PLS 287
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
R + + I + I+ KS + G + L + ++I
Sbjct: 288 AVNPRQGRFAKM-GPAILIYLAYFLSISATKSALEEGDISASIGMWPINGLLLLVAI 343
>gi|15639869|ref|NP_219319.1| hypothetical protein TP0884 [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189026107|ref|YP_001933879.1| hypothetical protein TPASS_0884 [Treponema pallidum subsp. pallidum
SS14]
gi|3323201|gb|AAC26574.1| conserved hypothetical integral membrane protein [Treponema
pallidum subsp. pallidum str. Nichols]
gi|189018682|gb|ACD71300.1| hypothetical integral membrane protein [Treponema pallidum subsp.
pallidum SS14]
Length = 362
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 51/363 (14%), Positives = 112/363 (30%), Gaps = 31/363 (8%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
FK+ L L F LVF ++ + Q + S + L +P + + P
Sbjct: 7 VFKHILVGVLCFF-----LVFFVNNVLLFAQTLLTKHVSAADVVRLLLYSIPAALIYVTP 61
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
F LV +++ L EL+ + +G+S L+ P + + +F + + + +
Sbjct: 62 FAVLVGSLLGLGRLRNNLELLALQVLGVSPRFLIFPLLSIGLCSALFVFVFSDVVVPASF 121
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
I L Q + S I + + I +
Sbjct: 122 ---IRLRQVYWRVLSSVPSLGFESHTTRKHNGVILSVGEVFHSVMYQL----LIVDKSDS 174
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI----------------PI 232
+ + + +++ + + + + T I
Sbjct: 175 RSLKVVSSRKSVLESSADQTVPFTIRMHDPCMLIVYRTRPRICDLIYGGRADYHVHTQQT 234
Query: 233 KMDGFQKF-SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + F F++ S Y I++ K N H + +F P+ +V ++
Sbjct: 235 QPEYFMGLGPGGFSTCSLYREIQE-KIKAKENPRHIATYQLEFQKKFSHPISVVLFIFLS 293
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+S S + G+ + I + ++P A IP +
Sbjct: 294 FGLST-LSNISSQGKGFVGGLIVVLGYWIISIGGQELALRLSIVPSLALWIPNAALFFTA 352
Query: 352 ILI 354
+++
Sbjct: 353 LIL 355
>gi|315453577|ref|YP_004073847.1| putative integral membrane protein [Helicobacter felis ATCC 49179]
gi|315132629|emb|CBY83257.1| putative integral membrane protein,Permease YjgP/YjgQ [Helicobacter
felis ATCC 49179]
Length = 355
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 55/359 (15%), Positives = 121/359 (33%), Gaps = 25/359 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
LW + YYLK Y + M L + + P+ + + +
Sbjct: 3 LWFFVGSYYLK---YCFVILMALELFFIGIDSLQYADKFPDAANLLLLFFVYDGL-YALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + R+++ AIG SI Q+LNP + ++ I V +
Sbjct: 59 YTLPISLLLGLVLFYITFIRSNQYSALLAIGYSIRQILNPMLTINLFFIIIFVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + +I +KDN +++ + ++ KI P ++ T+
Sbjct: 119 VYMQDKAMAII--YKDNAGNVSENLLV------KYNNDYVYFGKINPLLQNAQNIKIFTL 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ------YGRIPIDKNSTTLNIPIK---MD 235
K +++ AD A + L + G + + L +K
Sbjct: 171 -KNDELSAVAQADHAAFKDKYWTLHQATIATLPTPLGLGDQGLLVENAPLLKTLKGFHPK 229
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + S + + + + + + Y I+ P + ++ A +
Sbjct: 230 VLDTIYQNKPAVSITDAFRSLHVLYRQHG-DTKKIRGFLYVAILTPFFVPLTAILIARYT 288
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+R ++ I +L+ + + F +G+ P +IP I I +
Sbjct: 289 PNLARYENLALLSLKFIILALILWGLFFALGKFSIAGLFYPEFGIVIP--FAILCGITL 345
>gi|288929933|ref|ZP_06423775.1| putative permease [Prevotella sp. oral taxon 317 str. F0108]
gi|288328752|gb|EFC67341.1| putative permease [Prevotella sp. oral taxon 317 str. F0108]
Length = 630
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 8/193 (4%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
F +L T L M + F+ + G + VP Q +P
Sbjct: 15 FGMLFLGTFFICLFVLM-MQFLWRYVDELVGKGLTIEVLAQFFWWMGLMMVP----QALP 69
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L+ +++ F NL +SEL ++ GIS+ + + VV S + + + N I
Sbjct: 70 LAILLSSLITFGNLGESSELTAIKSAGISLTRTFSSLVVVSCFISATSFVFQNNIGPYST 129
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
L+ K + + + + + I +K + + +
Sbjct: 130 IKLSQLLVSMKQKNPELEIPEGVFY---DGIPNSNIYVQKKDVKTGKFYGIMIYRMSNSY 186
Query: 189 KIIHRKDADLAII 201
+ AD ++
Sbjct: 187 EDSEIILADSGML 199
Score = 41.8 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 5/83 (6%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ + + Y V+ L + I A + R I V + + Y +
Sbjct: 367 RQHKIEMYKKFVLSLSCLIFFFIGAPLGT-IIRKGGLGIPVIVSVLVFIVYYILDNSGYQ 425
Query: 328 FGKSGILLPVAAALIPVILTISL 350
+ GI A +L +
Sbjct: 426 MARRGIW----AIWFGELLATMV 444
>gi|145641036|ref|ZP_01796617.1| predicted permease [Haemophilus influenzae R3021]
gi|145274197|gb|EDK14062.1| predicted permease [Haemophilus influenzae 22.4-21]
Length = 336
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/278 (14%), Positives = 95/278 (34%), Gaps = 23/278 (8%)
Query: 40 MGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW 99
N L +P + Q ++P + ++ F L SE+ + RA G+
Sbjct: 6 AAANGNVPADLVFSLLGLGMPTMAQLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQR 65
Query: 100 QLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ 159
L+ ++ S+L ++ + +++++ K N ++ +N
Sbjct: 66 ILVKVALIMSLLTAGIAAYNALWLSPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNN 125
Query: 160 QDIFIGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAII-----YNDKVKLKKVVE 213
+FI +++ + + + + A+ + + + LK
Sbjct: 126 VVLFI----DKIKDNQIRNVYLFQMTPQKQTKPSVITAEKGELIALPNGDQVLNLKNTKR 181
Query: 214 YQYGRIPIDKNST---TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA 270
+ + D T + + +++ A + ++I S S K+
Sbjct: 182 VEGTSVLPDFRITHFDEYQAYLGYQSAENTNDEVAELTLSQLIDLDSSSAKA-------- 233
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+ ++ I + L + M LIA +S R + I+
Sbjct: 234 --ELHWRITLILAVPLMALIAVPLSRVNPRQGRFAKIL 269
>gi|326423843|ref|NP_760389.2| hypothetical protein VV1_1477 [Vibrio vulnificus CMCP6]
gi|319999213|gb|AAO09916.2| Putative membrane protein [Vibrio vulnificus CMCP6]
Length = 366
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/358 (12%), Positives = 111/358 (31%), Gaps = 25/358 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ ++ + + + S + A +P +
Sbjct: 2 IIVRYLIRETLKSQFAIFFVLFLVFLSQQFISVLADASD-GDIPASLIMSIVALNMPSMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+V+ A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLIQAALYLAVITSGVAAFNSLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L +Q + P + + ++ +
Sbjct: 121 SPWSMDRVEQLTEQVAAENSVDLLKKGQF--QFTPDRSSVVFID--DIKDKQLSNVFVAQ 176
Query: 184 IDKKNKIIHRKDADLAIIYNDKV--KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ I+ + N +L + + + + F+++
Sbjct: 177 LMPRDSIL-----PSVMFANGGEVKELSDGRQIISMKQGTRYEGVPTRVEYMITEFEQYD 231
Query: 242 EQFASRSF------YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-ASV 294
RS ++ I + N +AE Q+ + + + L+ M +I ++V
Sbjct: 232 GLIGQRSVKQRGRDWDAIPTLELIG--NPDPEAQAELQWRVSLFVCIPLLTMLVIPLSAV 289
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
S R + + + + I+ KS + G + L + ++I
Sbjct: 290 SPRQGRFAKMGPAILIYL----AYFLSISATKSALEEGDISASIGMWPINGLLLLVAI 343
>gi|256369122|ref|YP_003106630.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
gi|255999282|gb|ACU47681.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
Length = 402
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 51/361 (14%), Positives = 117/361 (32%), Gaps = 23/361 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L A+ + + + + + N + + ++ +P I ++
Sbjct: 7 YILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTT-SGQTFQTIVQFSSLLIPSAIPLVM 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N +
Sbjct: 66 PFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANYVEPYA 125
Query: 128 --------EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
DL+ G +K ++Q++ + D IG I D
Sbjct: 126 RINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRDPTLD- 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGF 237
I I D+ ++ N +V+ + V + I D + LN D
Sbjct: 185 -LIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGDDFV 243
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHN---YRAETQFYFLIVIPLMLVAMTLIAASV 294
++ + + + R Y LI ++A+ + S
Sbjct: 244 IFAKDRPLTYLLNPDPNDPMLQTRPLTYKAELHRRFTQWIYPLI---FTMIALAIAGDSR 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S +R + ++ + Y + L+P+++ + ++
Sbjct: 301 SHREARVSASFSAISTALLV----YWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356
Query: 355 L 355
L
Sbjct: 357 L 357
>gi|194290552|ref|YP_002006459.1| permease, yjgp/yjgq family [Cupriavidus taiwanensis LMG 19424]
gi|193224387|emb|CAQ70398.1| putative permease, YjgP/YjgQ family [Cupriavidus taiwanensis LMG
19424]
Length = 376
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/359 (14%), Positives = 117/359 (32%), Gaps = 27/359 (7%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
+ L T + M+ + L M S + +L + ++
Sbjct: 7 LRRELAYTAGAVFLVMLTFMLTSLVIRILGMAANGKASPNDVLMLIGLATIGYLSILLSA 66
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIW-------QLLNPFVVGSILLGIFTVLVINP 122
+ ++V + SE+V+ + GIS+ Q PF+V ++LLG+F N
Sbjct: 67 TLFISTLIVLTRWYKDSEMVVWFSAGISLRDLVKPVLQFAAPFIVLALLLGLFAWPWANQ 126
Query: 123 IATSGEKIGID--LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ + + + I D+ A+ + N +
Sbjct: 127 QSALFRDRFEQRGVMSMIAAGRFIEPAKANYVLFIEGIDADMK-HARNVFVANAEADKI- 184
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQK 239
+ + + + + + V ++ Y ID +K+D
Sbjct: 185 GVALAHQGQFETMPN------GDRLVVMENGRRYSGTPGQIDYRIVEFERYAVKVDNKPP 238
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
SE + I + + N+ I +P++ +IA ++
Sbjct: 239 ESEASLPPKSRDTIDLIRNPTRENLGELVW-------RISLPILAFNFVMIAIPLAYVNP 291
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + +V + +I + +S+ ++G + A P+ L + L L+L +
Sbjct: 292 RLGRYTPLVF-AVLIYLTYSNLINLSQSWVRNGSIPFWLA-WWPIHLAVFLGALLLFRY 348
>gi|83953614|ref|ZP_00962335.1| membrane protein, putative [Sulfitobacter sp. NAS-14.1]
gi|83841559|gb|EAP80728.1| membrane protein, putative [Sulfitobacter sp. NAS-14.1]
Length = 376
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/337 (12%), Positives = 107/337 (31%), Gaps = 38/337 (11%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY +L +F L + + ++ + +++ + +P +I
Sbjct: 5 DRYMLSQFLILFSFFALILVAIFWINRAVVLFDRLIG-DGQTALVFLEFTVLGLPKLITT 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P T ++ V + SEL + +A G S W+L P V + + I ++ + +
Sbjct: 64 VLPIATFAGSVYVINRMTSESELTVLQATGTSPWRLARPVFVYGLCVAIMMSVLTHLLLP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI-TI 184
+ + N + ++ ++ +++ + + D
Sbjct: 124 LSNGQLSEREAEISQNVTARLLTEGTFLHPTSK----VTFYTRVIDADGVLRDVFLSDRR 179
Query: 185 DKKNKIIHRKDADLAII---YNDKV---------KLKKVVEYQYGRIPIDKNSTTLNIPI 232
+ +I+ A A + + +L+ + D + ++
Sbjct: 180 NPDESVIY--TASEAYLIRNGDGTTLIMVDGMAQRLEMAGKRLSTAKFRDFSFDISSLVS 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + + + ++ KS+ + A +IAA
Sbjct: 238 SDKPRTQSIDAMTTAEMFAQWDQLETITKSSAGDIAE-------ELAQRFSSAAFCMIAA 290
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ +V G FS F ++ I+ +FG
Sbjct: 291 MI--------GYATLVLGG-FSRFGVW--REIVIAFG 316
>gi|161618656|ref|YP_001592543.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
gi|260566734|ref|ZP_05837204.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
gi|161335467|gb|ABX61772.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
gi|260156252|gb|EEW91332.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
Length = 402
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 51/361 (14%), Positives = 118/361 (32%), Gaps = 23/361 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L A+ + + + + + N + + ++ +P I ++
Sbjct: 7 YILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTT-SGQTFQTIVQFSSLLIPSAIPLVM 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF+ ++ +N+ SELV+ A G ++ P ++ + + + + L+ N +
Sbjct: 66 PFVLIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANYVEPYA 125
Query: 128 --------EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
DL+ G +K ++Q++ + D IG I D
Sbjct: 126 RINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRDPTLD- 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGF 237
I I D+ ++ N +V+ + V + I D + LN D
Sbjct: 185 -LIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGDDFV 243
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHN---YRAETQFYFLIVIPLMLVAMTLIAASV 294
++ + + + R Y LI ++A+ + S
Sbjct: 244 IFAKDRPLTYLLNPDPNDPMLQTRPLTYKAELHRRFTQWIYPLI---FAMIALAIAGDSR 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S +R + ++ + Y + L+P+++ + ++
Sbjct: 301 SHREARVSASFSAISTALLV----YWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356
Query: 355 L 355
L
Sbjct: 357 L 357
>gi|153820469|ref|ZP_01973136.1| membrane protein, putative [Vibrio cholerae NCTC 8457]
gi|126508986|gb|EAZ71580.1| membrane protein, putative [Vibrio cholerae NCTC 8457]
Length = 225
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/188 (12%), Positives = 60/188 (31%), Gaps = 5/188 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI EN +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFI----DNIENRKLYNVFVAQ 176
Query: 184 IDKKNKII 191
+ ++ I+
Sbjct: 177 LAPRDSIL 184
>gi|15964907|ref|NP_385260.1| hypothetical protein SMc00584 [Sinorhizobium meliloti 1021]
gi|307300977|ref|ZP_07580746.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
gi|307317712|ref|ZP_07597150.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
gi|15074086|emb|CAC45733.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
gi|306896474|gb|EFN27222.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
gi|306903932|gb|EFN34518.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
Length = 390
Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 5/177 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY F+ L LL M +V+ N + + SI LA +P +
Sbjct: 2 KLIERYIFRRATIMFLATLLPLMGIVWTTQALTNVNLVTD-SGQSIIAFLKLATLILPSV 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I+PF ++ +N SEL + A G S ++ P + + L + + + N
Sbjct: 61 VPIILPFALVIGVTQTLSAMNTDSELTVLSAAGSSRMSIIRPVMFLAAGLSVLSFAIDNF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ +I + + + +GA++ + +
Sbjct: 121 VEPYSRVAVRKMIATAHADLLASVVQE-NAFRKITDGLYVQVGARRS---GGVLQGI 173
>gi|294637821|ref|ZP_06716093.1| inner membrane protein YjgP [Edwardsiella tarda ATCC 23685]
gi|291089020|gb|EFE21581.1| inner membrane protein YjgP [Edwardsiella tarda ATCC 23685]
Length = 366
Score = 74.5 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/342 (12%), Positives = 117/342 (34%), Gaps = 13/342 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ + L +++ F + I + + + L +P +
Sbjct: 2 IIIRYLVRETFKSQVAILFILLLIFFCQKMVRILGAVVN-GDIPTNLVFSLLGLGIPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ +V + G + +
Sbjct: 61 QLILPLSLFLGLLMTLGRLYTESEITVMHACGLGKSVLIKAAMVLAFFTGALALANAFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + + + + + ++ + D
Sbjct: 121 SPWSSLHSDEVMAEAKANPGLASLAEGQF--QPSQDGNYVLFVGNV--KDKKFHDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ AD + V++K + T + ++ F +S
Sbjct: 177 LRPSGSQRPSVVVADSGHL----VEMKDGGQKVVLDSGTRYEGTAMLRDFRITDFVDYSA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYR--AETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+S ++ S ++H+ +F++ + + ++ M L+ +S+ R
Sbjct: 233 LIGHKSTMLDPNNADQASMSALWHSDEPSFRAEFHWRLTLVFSVLVMALMVVPLSVVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
+ + + + + + + + ++S G G L P+
Sbjct: 293 QGRV-LSMLPAMLLYLIFFLLQSSLRSNGGKGKLDPMIWMWA 333
>gi|163756953|ref|ZP_02164060.1| putative permease [Kordia algicida OT-1]
gi|161323072|gb|EDP94414.1| putative permease [Kordia algicida OT-1]
Length = 639
Score = 74.5 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 5/150 (3%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
P +I ++P LV +I+ F + E ++ GIS+ + +
Sbjct: 20 GLDAGVIFKFLLYTTPKLIPLVLPLSILVSSIMTFGRFAESYEFAAMKSTGISLQRAMRS 79
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
++ ++LG+ T N + E +L + N K+K + + N +I I
Sbjct: 80 LIIFIVILGVGTFFFSNSVIPWSEFKQYNL----RKNLAKKKPALAIGEGVFNDIGNINI 135
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRK 194
+N D I +K +R
Sbjct: 136 KVDNKYGDNDQLLDKVIIHQKSNDK-KNRI 164
Score = 46.0 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 10/85 (11%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ + + + + + + A + R + + I + + I K+
Sbjct: 340 QKIYMHDKFAVAIACIILFFVGAPLGA-IIRKGGIGLPMVVAICLFLVYHFIGIFGKNSA 398
Query: 330 KSGILLPVAAALIPVILTISLSILI 354
+ G + P + ++ + LSI
Sbjct: 399 EDGSIPPWLGTWLSTMIMLPLSIYF 423
>gi|326568200|gb|EGE18282.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis BC8]
Length = 442
Score = 74.5 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 59/377 (15%), Positives = 131/377 (34%), Gaps = 34/377 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY TT L ++++ L E ++ L P +
Sbjct: 62 ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAE-GGLNVGVLFRLIGYNFPYFL 120
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++VF L E+ + A GIS ++ + ++L V
Sbjct: 121 ELILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVA 180
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + ++ W++ Q D+I Q D + ++ +D I
Sbjct: 181 KPWGMERATNI---WQEQSVAQVFDLIR-PQEFISSGDYHLYVGEMGANREFLKDVIIIQ 236
Query: 184 I--DKKNKIIHR--------KDADLAII---YNDKVK--LKKVVEYQYGRIPIDKNS--- 225
+ + + I R A A N +++ L++ Y+ +
Sbjct: 237 MHTAEPSDIQSRQSHKRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGF 296
Query: 226 --TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + +K + S E++ + S + A + + + +P +
Sbjct: 297 ERYRMTLSVKP-PEGTSHIRIEGVSTTELLSII--QGHSKRDNPQEAYAELGYRLSMPWL 353
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV--AAAL 341
++ L+A +S R + +V + + +I++ + K G L PV AAL
Sbjct: 354 ILLAILLATPLSYVRPRQGRWYKLVPAILIYVAGVLVVISLKDTIAK-GKLSPVIYLAAL 412
Query: 342 IPVILTISLSILILLQK 358
++ + +++ + +
Sbjct: 413 ---LMMMVVAMYLNYHQ 426
>gi|82523966|emb|CAI78777.1| predicted permease YjgP/YjgQ family [uncultured epsilon
proteobacterium]
Length = 356
Score = 74.5 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 51/359 (14%), Positives = 120/359 (33%), Gaps = 28/359 (7%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
++Y +Y+K L L+ M+ + D E + S + + + I
Sbjct: 4 FKYISFHYIKYFLIILIALMLFLVGFDYMENAGDLSS----SANLVLIYLVYKAFFAIDM 59
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P + + L R++ LV ++G S +L PFVV S + V+ I+ A
Sbjct: 60 LLPLSLVFAMVSTKIFLIRSNALVSFYSLGYSRVDVLRPFVVVSTSI---IVIFISLHAL 116
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ + N + + + ++ K+LP E ++
Sbjct: 117 PSFSRADEYSNNIRKNAEYLSPTRDLFFTYKDQ----YVYFSKMLPLQERAEGIRVFSVI 172
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNI-----------PIK 233
N + A A+ +D +K+ + + + + + + P
Sbjct: 173 -NNSLQEVLVAKSAVYRDDYWHIKQADIIRKPIDLSFESSGIRVTSVEDMKILEGFRPKI 231
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+D + F + I F K+ + Y + V P + + +I
Sbjct: 232 LDQVYEGKVNFTITDAIDAI----FLLKNQNISVSTIKGALYKIFVYPFFVPCLVIIIFF 287
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
R + I + +++ I+ ++ + + + P+++ +S+
Sbjct: 288 FVPISPRFLNVSLFSFGAILATLLVWGILFMLIELSNNKTIPSEIGVVAPIVILFLISM 346
>gi|269140438|ref|YP_003297139.1| putative permease [Edwardsiella tarda EIB202]
gi|267986099|gb|ACY85928.1| putative permease [Edwardsiella tarda EIB202]
gi|304560231|gb|ADM42895.1| Predicted permease [Edwardsiella tarda FL6-60]
Length = 366
Score = 74.5 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 42/354 (11%), Positives = 125/354 (35%), Gaps = 13/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ + L +++ F + I + + + L +P +
Sbjct: 2 IIIRYLVRETFKSQVAILFILLLIFFCQKMVRILGAVVN-GDIPTNLVFSLLGLGIPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ + + + G ++ +
Sbjct: 61 QLILPLSLFLGLLMTLGRLYTESEITVMHACGLSKAVLVKAAMALAFITGALALVNAFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + + N + + + + + ++ + +
Sbjct: 121 SPWSSLHSDEVMAEARANPGLASLAEGQF--QPSQDGNYVLFVGNV--KDKKFHNVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ AD + V++K + T + ++ F +S
Sbjct: 177 LRPSGSQRPSVVVADSGHL----VEMKDGAQKVVLDSGTRYEGTAMLRDFRITDFVDYSA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYR--AETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+S ++ S ++H+ +F++ + + ++ M L+ +S+ R
Sbjct: 233 IIGHKSAMLDPNNADQASMSALWHSQEPSFRAEFHWRLTLVFSVIVMALMVVPLSVVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + + ++S G L P+ L + L++++
Sbjct: 293 QGRV-LSMLPAMLLYLIFFLLQSSLRSNGGKDKLDPMIWMWGVNGLYLLLAVVL 345
>gi|304311789|ref|YP_003811387.1| Predicted permease YjgP/YjgQ family [gamma proteobacterium HdN1]
gi|301797522|emb|CBL45742.1| Predicted permease YjgP/YjgQ family [gamma proteobacterium HdN1]
Length = 369
Score = 74.5 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/310 (11%), Positives = 112/310 (36%), Gaps = 23/310 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L TTL ++++ + + + + + ++P +
Sbjct: 2 IIYRYLSRQLLVTTLAVTGVLVLILMGGRFIKYLGGAAD-GVLTGALIFWVMLYKLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++ + + +E+V+ A G+S L+ ++ ++ + + N +
Sbjct: 61 ELILPLGLFLGILLSYGRMYLENEMVVLEACGMSRGALVKHTLMPALCTALIVGFIANYV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ + K + + N + I ++ ++ +
Sbjct: 121 SPLCNTKAQTMLDEQKRKSALELLSPGQFHATRNAM--TVTYIEDIDGKHKEMQNLFIVN 178
Query: 184 IDKKN----KIIHRKDADLAIIYN---DKVKLKKVVEYQYGRIPIDKNST---TLNIPIK 233
++ N +I K D I + + +K+ ++ N T + +
Sbjct: 179 YNQANPEKIEITRAKRGDYQIHEDTGARYLVMKEGYRFEGSAGMAKFNRTAFDVYQLKLD 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ Q+ S +++ + S + ++ + + + +P+++ + +A
Sbjct: 239 PPRPLEIEGQYTLMSDAQLVLEGSLAARA----------ELQWRMALPVLVPIIAYLAVI 288
Query: 294 VSLEFSRSNQ 303
+S R +
Sbjct: 289 LSKVNPRQGR 298
>gi|148255228|ref|YP_001239813.1| putative permease [Bradyrhizobium sp. BTAi1]
gi|146407401|gb|ABQ35907.1| putative permease [Bradyrhizobium sp. BTAi1]
Length = 389
Score = 74.5 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/338 (13%), Positives = 112/338 (33%), Gaps = 36/338 (10%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G + RY F+ L + L+ ++++ + M +I + +P +
Sbjct: 2 GSIDRYIFRTTLASFAVVLVSLTGVIWITQALRGIDLMTS-QGQTILTFLGITGLVIPSL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I P ++ L SE+++ A G+S +L PF + ++ I +
Sbjct: 61 LGVIAPIALMIAVSHTLNKLATDSEIIVMNAAGMSPIRLFVPFAYATCVVAILVTFIAAF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A G + + + + + Q++ I ++ P + I
Sbjct: 121 FAPDGLRRIKQWDAEITADVLANILQPG---RFAQLDQNLTIRIRERQPGG----ELQGI 173
Query: 183 TIDKKNKIIHRKD--ADLAI-----------IYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
ID + R A+ + + ++ +V + + + + + ++
Sbjct: 174 LIDDRRDPKERITIIAEKGTVVKNPDGSFLVLEDGNLERFEVGKREPAMVAFARYAFDMS 233
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH--NYRAETQFYFLIVIPL----- 282
Q R Y + + M+ + I+ + + + + P+
Sbjct: 234 KFSN----QGRDVTLGIRERY-LWELMAPAEDDPIYKQIPGQFRQELHDRFLAPIYPFAF 288
Query: 283 MLVAMTLIAASVSLEFSR--SNQPRIIVAYGI-FSGFM 317
+ + A + SR S I+ +G+ +GF
Sbjct: 289 AALTFAFLGAPRTTRQSRNFSFGSAILAVFGVRMAGFA 326
>gi|305667079|ref|YP_003863366.1| hypothetical protein FB2170_12551 [Maribacter sp. HTCC2170]
gi|88708012|gb|EAR00250.1| hypothetical protein FB2170_12551 [Maribacter sp. HTCC2170]
Length = 482
Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/183 (15%), Positives = 60/183 (32%), Gaps = 8/183 (4%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVV 78
F+ + ID ++ + I +P + ++++P L+ +I+
Sbjct: 1 MFIFIFQTIWLFID--DLAGK-----GLDIIIIGKFLFYLMPNLTEKVLPLTVLLSSILT 53
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
F L E +A GIS+ + + +V + LG T N + + E+ +L +
Sbjct: 54 FGTLAENYEFAAMKASGISLQRAMLSLIVFIVFLGGVTFYFANSVIPASEQKIYNLRRNI 113
Query: 139 KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADL 198
+ +I + KK + E+ T K A
Sbjct: 114 AKVKPAVAIVEGVFSDFEGADMNIKV-DKKHGENDRFLENVTIHQKTKTKVNSTVIKAKS 172
Query: 199 AII 201
+
Sbjct: 173 GEL 175
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
R + + L V + + A + R + + I Y I +++
Sbjct: 364 RHIISLHKKYALALSCVILFFVGAPLGA-IIRKGGIGLPMVIAIVLFLTYYFIGVFAENY 422
Query: 329 GKSGILLPVAAALIPVILTISLSILI 354
K + P+ A + ++ + LSI++
Sbjct: 423 AKKNEIHPIIGAWLSTMIMLPLSIVL 448
>gi|238787644|ref|ZP_04631442.1| Inner membrane protein yjgP [Yersinia frederiksenii ATCC 33641]
gi|238724431|gb|EEQ16073.1| Inner membrane protein yjgP [Yersinia frederiksenii ATCC 33641]
Length = 364
Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 50/362 (13%), Positives = 124/362 (34%), Gaps = 29/362 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ +++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALVTSALAAVNTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG-----------AKKILPE 172
K +++ + N + ++ +FIG ++ P
Sbjct: 121 GPWSSKHQDEVLTDARANPSLAALAGGQFKSSTDGNSALFIGNVSGKEFNRVFLAQLRPN 180
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
+ + R D +I N + + + RI + T+
Sbjct: 181 GNQRPSVVV---ADSGHMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQTIIGHQ 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
++ +EQ R + + + +F++ + + + +V M L+
Sbjct: 238 EVQQDNSVAEQMTMRQLWHATEPDA-------------RAEFHWRLTLIVSVVIMALLVV 284
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+S+ R + + + + + + + T ++S G L P+ ++L++
Sbjct: 285 PLSVVNPRQGRV-LSMLPAMLLYLIFFLLQTSLRSNASKGKLDPLVWLWAVNGAYLALAV 343
Query: 353 LI 354
L+
Sbjct: 344 LL 345
>gi|291060243|gb|ADD72978.1| putative permease, YjgP/YjgQ family [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 365
Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 51/363 (14%), Positives = 112/363 (30%), Gaps = 31/363 (8%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
FK+ L L F LVF ++ + Q + S + L +P + + P
Sbjct: 10 VFKHILVGVLCFF-----LVFFVNNVLLFAQTLLTKHVSAADVVRLLLYSIPAALIYVTP 64
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
F LV +++ L EL+ + +G+S L+ P + + +F + + + +
Sbjct: 65 FAVLVGSLLGLGRLRNNLELLALQVLGVSPRFLIFPLLSIGLCSALFVFVFSDVVVPASF 124
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
I L Q + S I + + I +
Sbjct: 125 ---IRLRQVYWRVLSSVPSLGFESHTTRKHNGVILSVGEVFHSVMYQL----LIVDKSDS 177
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI----------------PI 232
+ + + +++ + + + + T I
Sbjct: 178 RSLKVVSSRKSVLESSADQTVPFTIRMHDPCMLIVYRTRPRICDLIYGGRADYHVHTQQT 237
Query: 233 KMDGFQKF-SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + F F++ S Y I++ K N H + +F P+ +V ++
Sbjct: 238 QPEYFMGLGPGGFSTCSLYREIQE-KIKAKENPRHIATYQLEFQKKFSHPISVVLFIFLS 296
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+S S + G+ + I + ++P A IP +
Sbjct: 297 FGLST-LSNISSQGKGFVGGLIVVLGYWIISIGGQELALRLSIVPSLALWIPNAALFFTA 355
Query: 352 ILI 354
+++
Sbjct: 356 LIL 358
>gi|282892297|ref|ZP_06300693.1| hypothetical protein pah_c221o031 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281497888|gb|EFB40239.1| hypothetical protein pah_c221o031 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 359
Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 56/369 (15%), Positives = 123/369 (33%), Gaps = 42/369 (11%)
Query: 23 GAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNL 82
A + + + + L S +++P I+ +IP +L+ ++++ L
Sbjct: 1 MAFVAILLTTRFDEIAHFAALGAAG-SHIIWFIVSQIPYILPIVIPISSLIASLLLIQRL 59
Query: 83 NRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNG 142
++T EL RA G +I +L P ++ + + + +++ +AT+ L ++ +
Sbjct: 60 SQTHELTALRASGWAIRDILYPILIAAAFIALLNFYIVSELATNSHLQASLLKKELRSIN 119
Query: 143 DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY 202
+ M++ + A ++ K+N I A ++
Sbjct: 120 PLLLLNNKHLMRVKG----AYFHAMGNSRVGEFAKNALFAMPSKQNNRIQLMIAKS--LH 173
Query: 203 NDKVKLKKVVEYQYGRIPIDKNST-----TLNIPIKMDGFQKFSEQFASRSFY------- 250
D V +P++ + N+ M Q FS F F
Sbjct: 174 ADSVLFIGNSVTNMTTLPVENGESFDHFVVENLEKTMTPIQDFSLIFQRNVFSLSNDHLK 233
Query: 251 ---------------EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ K R+ + + + + + TL+ +
Sbjct: 234 LSLLIYRMKEQALHLRQPNLLREEMKQLQKQQNRSYAEIIRRFSLAIAVFSFTLMGCAFG 293
Query: 296 LEFSR---SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ SR + ++A +F +T I + +L LIP +L + +S
Sbjct: 294 MNISRHRSNKGVVFVIALAVFYLISYFTAKGIEHHLFSATLLY-----LIPHLLILGISS 348
Query: 353 LILLQKEDG 361
IL + G
Sbjct: 349 FILYRVSRG 357
>gi|315138812|dbj|BAJ45971.1| conserved inner membrane protein [Escherichia coli DH1]
Length = 366
Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 56/354 (15%), Positives = 125/354 (35%), Gaps = 13/354 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ ++ ++ I + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +++ + K N + Q +N +FI + ++D
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFI----ESVDGSDFKDVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
I K AD + +L+ + T + ++ FQ +
Sbjct: 177 IRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTRFEGTAMLRDFRITDFQDYQA 232
Query: 243 QFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ + ++ RA + + I + + M L+ +S+ R
Sbjct: 233 IIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWCITLVFTVFMMALMVVPLSVVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 293 QGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 345
>gi|238798772|ref|ZP_04642243.1| Inner membrane protein yjgP [Yersinia mollaretii ATCC 43969]
gi|238717404|gb|EEQ09249.1| Inner membrane protein yjgP [Yersinia mollaretii ATCC 43969]
Length = 364
Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 52/369 (14%), Positives = 126/369 (34%), Gaps = 31/369 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ ++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALGTSALAAVNTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG-----------AKKILPE 172
K +++ + N + ++ +FIG ++ P
Sbjct: 121 GPWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVTGKEFNRVFLAQLRPN 180
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
+ + R D +I N + + + RI + +
Sbjct: 181 GNQRPSVVV---ADSGHMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQ 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
++ +EQ + + +SN +F++ + + + +V M L+
Sbjct: 238 EVQQNSNVAEQMTMKQLW----------RSNEADA---RAEFHWRLTLIVSVVIMALLVV 284
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+S R + + + + + + + + ++S +G L P+ + + L+I
Sbjct: 285 PLSAVNPRQGRV-LSMLPAMLLYLIFFLLQSSLRSNAGNGKLDPLL--WMWTVNGTYLAI 341
Query: 353 LILLQKEDG 361
++L DG
Sbjct: 342 AVILNLWDG 350
>gi|282880145|ref|ZP_06288865.1| putative membrane protein [Prevotella timonensis CRIS 5C-B1]
gi|281306018|gb|EFA98058.1| putative membrane protein [Prevotella timonensis CRIS 5C-B1]
Length = 635
Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/205 (16%), Positives = 70/205 (34%), Gaps = 10/205 (4%)
Query: 1 MPGI--LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISR--GAVLAA 56
M I L + K + L F I FV+ + + + +L +S A
Sbjct: 1 MFRIKKLDIFTAKQFG---LLFAGTFFICQFVLMMQFLWRYVDDLIGKGLSMEIMAQFFW 57
Query: 57 TRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
++ Q +P L+ +++ F NL SEL ++ GIS+++ P + +I + +
Sbjct: 58 YMGLFLVPQALPLAVLLSSLITFGNLGENSELTAIKSSGISMFRTFQPLISLTIFISFSS 117
Query: 117 VLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
N + LI K + + + + + + +K E
Sbjct: 118 FYFQNYVGPKANMKLAQLILSMKQKSPELEIPEGIFY---DGIPNSNLYVQKKDVETGKL 174
Query: 177 EDFTSITIDKKNKIIHRKDADLAII 201
+ + AD ++
Sbjct: 175 YGIMIYRMTGSYEDQAIILADSGML 199
Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 11/84 (13%), Positives = 21/84 (25%), Gaps = 2/84 (2%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ + L + I A + R + + + Y
Sbjct: 370 HRIEMIGKFTLALTCLIFFFIGAPLGA-IIRKGGLGFPIIISVLVFIIYYIFENTGYRMA 428
Query: 330 KSGILLPVAA-ALIPVILTISLSI 352
+SGI L P +L +
Sbjct: 429 RSGIWTVNFGKGLAPAVLIPLAAF 452
>gi|241203949|ref|YP_002975045.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240857839|gb|ACS55506.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 393
Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 55/370 (14%), Positives = 137/370 (37%), Gaps = 28/370 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L Y + + L LL + +++ + + N + + SI A LA +P I
Sbjct: 2 KLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPSI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I ++PF ++ +N SEL + A G L+ P ++ + + +F+ V N
Sbjct: 61 IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAAISVFSFFVDNV 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + +I + S +I + +++ K + + F +
Sbjct: 121 VEPRAKTVVRQMIAE---TYADLLSSVIEEKTFRKLDEGLYVQISKRMAGRMLKGLFVAD 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKL-----KKVVEYQYGRIPI-DKNSTTLNIPIKMDG 236
D ++I+ A + + L + + G + + + +S + ++ +
Sbjct: 178 ERDPAYELIY--YAKEGAVDDTGTTLIMHEGEVHRKTPDGNVSVINFDSYSFDLSDMTEN 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + + R + +I ++K + + + ++ V L + +++
Sbjct: 236 RGQATLRASDRDLWFLIN-PDPADKDYTIRPQSYRAELHRRLTDWILPVVFALFSLAIA- 293
Query: 297 EFSRSNQPRII--VAYGIFSGF-----MLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+RS++ + + + F Y I + + A I++
Sbjct: 294 GDARSHREARLHPMVSALAYAFAMRWAAFYAANQIDTD---PEYIAVLYAI---PIVSSI 347
Query: 350 LSILIL-LQK 358
+SI+ L L K
Sbjct: 348 VSIVFLGLHK 357
>gi|326559485|gb|EGE09908.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis 7169]
gi|326566095|gb|EGE16252.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis BC1]
gi|326567798|gb|EGE17902.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis 12P80B1]
gi|326572163|gb|EGE22159.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis BC7]
Length = 437
Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 59/377 (15%), Positives = 131/377 (34%), Gaps = 34/377 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY TT L ++++ L E ++ L P +
Sbjct: 57 ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAE-GGLNVGVLFRLIGYNFPYFL 115
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++VF L E+ + A GIS ++ + ++L V
Sbjct: 116 ELILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVA 175
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + ++ W++ Q D+I Q D + ++ +D I
Sbjct: 176 KPWGMERATNI---WQEQSVAQVFDLIR-PQEFISSGDYHLYVGEMGANREFLKDVIIIQ 231
Query: 184 I--DKKNKIIHR--------KDADLAII---YNDKVK--LKKVVEYQYGRIPIDKNS--- 225
+ + + I R A A N +++ L++ Y+ +
Sbjct: 232 MHTAEPSDIQSRQSHKRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGF 291
Query: 226 --TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + +K + S E++ + S + A + + + +P +
Sbjct: 292 ERYRMTLSVKP-PEGTSHIRIEGVSTTELLSII--QGHSKRDNPQEAYAELGYRLSMPWL 348
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV--AAAL 341
++ L+A +S R + +V + + +I++ + K G L PV AAL
Sbjct: 349 ILLAILLATPLSYVRPRQGRWYKLVPAILIYVAGVLVVISLKDTIAK-GKLSPVIYLAAL 407
Query: 342 IPVILTISLSILILLQK 358
++ + +++ + +
Sbjct: 408 ---LMMMVVAMYLNYHQ 421
>gi|325108543|ref|YP_004269611.1| permease YjgP/YjgQ family protein [Planctomyces brasiliensis DSM
5305]
gi|324968811|gb|ADY59589.1| permease YjgP/YjgQ family protein [Planctomyces brasiliensis DSM
5305]
Length = 374
Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 62/381 (16%), Positives = 126/381 (33%), Gaps = 40/381 (10%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM------GELPNYSISRGAVL 54
M I R F+ +L FL M L +IDL + + G P ++
Sbjct: 1 MLTIFERSVFRQFLFVNAVFLCVIMGLFTIIDLFDNVDDFVNHSGEGGFPVIAMKIVGYY 60
Query: 55 AATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI 114
+ + +P I + + L R ++ + GI +++L P ++ + +
Sbjct: 61 GKMGLFIFDAAAVPMIA-ISLLTTMLMLKRKGQIKPFLSAGIPAYRVLTPALLCGVCV-- 117
Query: 115 FTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
+ + E + + + K +S + + I I + PE
Sbjct: 118 ----MTGLKMANREILLGNAVHHLHATRGKSQSQHRVAPR-YDHASHILIDGWAVYPEAS 172
Query: 175 IWEDFTSI---TIDKKNKIIHRKDADLAIIYNDK------VKLKKVVEYQYGRIPIDKNS 225
E + I + I A A Y + L++ E + IP+ +
Sbjct: 173 RIEQAAFVLPPEIAGNDMIC--LKAAEAKFYPKQGKRPSGWLLRQ-SEPKIDSIPLTEAG 229
Query: 226 TTLNIPIK------------MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ 273
I + D K E A S +++ ++ S + E
Sbjct: 230 RQYVIRSRQPENVFVVSDVSPDLIYKAKESSAFLSTRQLLLRIR-SPAIDSNTARDLEFN 288
Query: 274 FYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGI 333
+ IV P++ M IA + L G++ F++ ++ +
Sbjct: 289 LHARIVEPVLTGLMVWIAIPLILRKESRGMIIAAGNCGLWL-FIVIASTYAVRFMASGSL 347
Query: 334 LLPVAAALIPVILTISLSILI 354
+ PV AA +P+ L +++ +
Sbjct: 348 VTPVQAAWLPLYLATPMAVWL 368
>gi|163842957|ref|YP_001627361.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
gi|163673680|gb|ABY37791.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
Length = 402
Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 51/361 (14%), Positives = 117/361 (32%), Gaps = 23/361 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L A+ + + + + + N + + ++ +P I ++
Sbjct: 7 YILRRVAIMFFAVLGAAVGITWTVRVLQRINFLTT-SGQTFQTIVQFSSLLIPSAIPLVM 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N +
Sbjct: 66 PFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANYVEPYA 125
Query: 128 --------EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
DL+ G +K ++Q++ + D IG I D
Sbjct: 126 RINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRDPTLD- 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGF 237
I I D+ ++ N +V+ + V + I D + LN D
Sbjct: 185 -LIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGDDFV 243
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHN---YRAETQFYFLIVIPLMLVAMTLIAASV 294
++ + + + R Y LI ++A+ + S
Sbjct: 244 IFAKDRPLTYLLNPDPNDPMLQTRPLTYKAELHRRFTQWIYPLI---FAMIALAIAGDSR 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S +R + ++ + Y + L+P+++ + ++
Sbjct: 301 SHREARVSASFSAISTALLV----YWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356
Query: 355 L 355
L
Sbjct: 357 L 357
>gi|326565140|gb|EGE15331.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis 103P14B1]
gi|326572841|gb|EGE22826.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis CO72]
gi|326573713|gb|EGE23671.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis O35E]
Length = 437
Score = 73.7 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 59/377 (15%), Positives = 131/377 (34%), Gaps = 34/377 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY TT L ++++ L E ++ L P +
Sbjct: 57 ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAE-GGLNVGVLFRLIGYNFPYFL 115
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++VF L E+ + A GIS ++ + ++L V
Sbjct: 116 ELILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVA 175
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + ++ W++ Q D+I Q D + ++ +D I
Sbjct: 176 KPWGMERATNI---WQEQSVAQVFDLIR-PQEFISSGDYHLYVGEMGANREFLKDVIIIQ 231
Query: 184 I--DKKNKIIHR--------KDADLAII---YNDKVK--LKKVVEYQYGRIPIDKNS--- 225
+ + + I R A A N +++ L++ Y+ +
Sbjct: 232 MHTAEPSDIQSRQSHQRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGF 291
Query: 226 --TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + +K + S E++ + S + A + + + +P +
Sbjct: 292 ERYRMTLSVKP-PEGTSHIRIEGVSTTELLSII--QGHSKRDNPQEAYAELGYRLSMPWL 348
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV--AAAL 341
++ L+A +S R + +V + + +I++ + K G L PV AAL
Sbjct: 349 ILLAILLATPLSYVRPRQGRWYKLVPAILIYVAGVLVVISLKDTIAK-GKLSPVIYLAAL 407
Query: 342 IPVILTISLSILILLQK 358
++ + +++ + +
Sbjct: 408 ---LMMMVVAMYLNYHQ 421
>gi|188583150|ref|YP_001926595.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
gi|179346648|gb|ACB82060.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
Length = 389
Score = 73.7 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 1/136 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ L L L+G ++V + + ++ + A +P +I
Sbjct: 4 IERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAKGQ-TLLVFLFITALSLPTLIT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I P + + LN SEL++ A G+ QLL PFV ++ + + + +
Sbjct: 63 VIAPVALFIACVYALNKLNGDSELIVMSAAGMPPRQLLRPFVTLALAVSVVVAFLTIQVM 122
Query: 125 TSGEKIGIDLIQQWKD 140
S + D++ + +
Sbjct: 123 PSSFQELRDVLTRVRG 138
>gi|146277168|ref|YP_001167327.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17025]
gi|145555409|gb|ABP70022.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
17025]
Length = 376
Score = 73.7 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 53/354 (14%), Positives = 127/354 (35%), Gaps = 35/354 (9%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRG------AVLAATRVPLII 63
F YL + L L G LV V L N+ L + IS G + +P +I
Sbjct: 4 FDRYLLSQLVALFGFFSLVLV--LVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNVI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ ++P I + L++ SELV+ +A G S ++L P ++ +++ + ++++N +
Sbjct: 62 RLVLPLSAFAATIYIVNRLSQESELVVMQATGFSAFRLARPVILFGLIVAMMMIVLMNLL 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +N + ++ +P + + + ++I + + +
Sbjct: 122 VPASRATLSARSAEISENATARFLRDGEFL---HPVRGVTLYIREISETGELND---LLL 175
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD-------- 235
+D +++ + +++ + + L + D
Sbjct: 176 VDDRDRARSTIYTARRALLVRTETTPRLLMIDGSAQTLTREGRRLELTRFADVTYDLGAF 235
Query: 236 -----GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
++ E+ ++ + + + E + I P + +A +LI
Sbjct: 236 MKSDGPKRRVLEELSTPDLLA-PTEALLAETRSTRAAALYEG--HSRIAQPFLGLASSLI 292
Query: 291 A-ASVSLE-FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG--ILLPVAAA 340
A++ L FSR + + + ++ TI G + + AA
Sbjct: 293 GFAALLLGSFSRFG-LWWQILFAVVLLIVVQTINVAASGVGVTDEALWPLAYAA 345
>gi|254488881|ref|ZP_05102086.1| permease YjgP/YjgQ family protein [Roseobacter sp. GAI101]
gi|214045750|gb|EEB86388.1| permease YjgP/YjgQ family protein [Roseobacter sp. GAI101]
Length = 376
Score = 73.7 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/373 (13%), Positives = 120/373 (32%), Gaps = 43/373 (11%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY +L +F L + + ++ + +++ + +P +I
Sbjct: 5 DRYMLSQFLTLFSFFALVLVAIFWINRAVILFDRLIG-DGQTALVFLEFTVLGLPRLITT 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P T V + SEL + +A G W+L P I + + ++ + +
Sbjct: 64 VLPIATFAGAAYVINRMTSESELTVLQATGTGPWRLARPVFAYGICVALMMSVLTHVLVP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWM----------QISNPQQ---DIFIGAKKILPE 172
+ + N + ++ ++ D+F+ ++ E
Sbjct: 124 MTKAELNQREAEISQNVTARLLTEGTFLHPTSKVTFYTRLIGNDGVLRDVFLSDRRNPDE 183
Query: 173 NHIWEDFTSITI-DKKNKIIHRKD--ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
I+ + + + + D A + ++ K ++ + + NST
Sbjct: 184 GVIYTAAEAYLVRNGNGTTLIMVDGLAQRLQVEGKQLATAKFRDFSFDISALVSNST--- 240
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
S+ S ++++K + + PL + +
Sbjct: 241 ---------DESQSIDSMVTFDLLKNWDDLAAKTGQTHGDIAEEVNARFADPLFCIIAAM 291
Query: 290 IA-ASVSL-EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK-----SGILLPVAAALI 342
I A++ + FSR R IV I G +L I + + + + +
Sbjct: 292 IGYATLIMGGFSRFGVWREIV---IAFG-LLIAIDGFSSTLVETVRQDASRWPVLY---V 344
Query: 343 PVILTISLSILIL 355
P ++ L + ++
Sbjct: 345 PSLVGAMLVLAMI 357
>gi|86357092|ref|YP_468984.1| putative permease protein [Rhizobium etli CFN 42]
gi|86281194|gb|ABC90257.1| putative permease protein [Rhizobium etli CFN 42]
Length = 393
Score = 73.7 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/324 (14%), Positives = 121/324 (37%), Gaps = 16/324 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L Y + + L LL + +++ + + N + + SI A LA +P I
Sbjct: 2 KLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPSI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I ++PF ++ +N SEL + A G L+ P ++ + ++ +F+ V N
Sbjct: 61 IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRTILVRPILLLAAVISVFSFFVDNI 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + +I + S +I + +++ + L + F +
Sbjct: 121 VEPRAKTVARQMIAE---TYADLLSSVIEEKTFRKLDEGLYVQISQRLAGRMLKGLFVAD 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKL--KKVVEYQYGRIP----IDKNSTTLNIPIKMDG 236
D ++I+ A + + L ++ I+ +S + ++ +
Sbjct: 178 ERDPAYELIY--YAKEGAVDDTGTTLIMHDGEVHRKTPDGNVSVINFDSYSFDLSDMTES 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + + R + + ++K + + + ++ V L + +++
Sbjct: 236 RGQATLKASDRDLWFLFN-PDPNDKDYTIRPQSYRAELHRRLTDWILPVVFALFSLAIA- 293
Query: 297 EFSRSNQPRII--VAYGIFSGFML 318
+RS++ + + + F L
Sbjct: 294 GDARSHREARLHPMVSALGYAFAL 317
>gi|296114026|ref|YP_003627964.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis RH4]
gi|295921720|gb|ADG62071.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis RH4]
Length = 396
Score = 73.7 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 59/377 (15%), Positives = 131/377 (34%), Gaps = 34/377 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY TT L ++++ L E ++ L P +
Sbjct: 16 ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAE-GGLNVGVLFRLIGYNFPYFL 74
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++VF L E+ + A GIS ++ + ++L V
Sbjct: 75 ELILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVA 134
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + ++ W++ Q D+I Q D + ++ +D I
Sbjct: 135 KPWGMERATNI---WQEQSVAQVFDLIR-PQEFISSGDYHLYVGEMGANREFLKDVIIIQ 190
Query: 184 I--DKKNKIIHR--------KDADLAII---YNDKVK--LKKVVEYQYGRIPIDKNS--- 225
+ + + I R A A N +++ L++ Y+ +
Sbjct: 191 MHTAEPSDIQSRQSHQRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGF 250
Query: 226 --TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + +K + S E++ + S + A + + + +P +
Sbjct: 251 ERYRMTLSVKP-PEGTSHIRIEGVSTTELLSII--QGHSKRDNPQEAYAELGYRLSMPWL 307
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV--AAAL 341
++ L+A +S R + +V + + +I++ + K G L PV AAL
Sbjct: 308 ILLAILLATPLSYVRPRQGRWYKLVPAILIYVAGVLVVISLKDTIAK-GKLSPVIYLAAL 366
Query: 342 IPVILTISLSILILLQK 358
++ + +++ + +
Sbjct: 367 ---LMMMVVAMYLNYHQ 380
>gi|190891136|ref|YP_001977678.1| permease [Rhizobium etli CIAT 652]
gi|190696415|gb|ACE90500.1| putative permease protein [Rhizobium etli CIAT 652]
Length = 403
Score = 73.7 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 47/324 (14%), Positives = 121/324 (37%), Gaps = 16/324 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L Y + + L LL + +++ + + N + + SI A LA +P I
Sbjct: 12 KLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPSI 70
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I ++PF ++ +N SEL + A G L+ P ++ + ++ +F+ V N
Sbjct: 71 IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSILVRPILLLAAVISVFSFFVDNI 130
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + +I + S +I + +++ K L + F +
Sbjct: 131 VEPRAKTVARQMIAE---TYADLLSSVIEEKTFRKIDEGLYVQISKRLAGRMLKGLFVAD 187
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKL--KKVVEYQYGRIP----IDKNSTTLNIPIKMDG 236
D ++I+ A + + L ++ I+ +S + ++ +
Sbjct: 188 ERDPAYELIY--YAKEGAVDDSGTTLIMHDGEVHRKTPDGNVSVINFDSYSFDLSDMTES 245
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + + R + + ++K + + + ++ V L + +++
Sbjct: 246 RGQATLKASDRDLWFLFN-PDPNDKDYTIRPQSYRAELHRRLTDWILPVVFALFSLAIA- 303
Query: 297 EFSRSNQPRII--VAYGIFSGFML 318
+RS++ + + + F L
Sbjct: 304 GDARSHREARLHPMVSALAYAFAL 327
>gi|330993929|ref|ZP_08317859.1| hypothetical protein SXCC_03824 [Gluconacetobacter sp. SXCC-1]
gi|329758875|gb|EGG75389.1| hypothetical protein SXCC_03824 [Gluconacetobacter sp. SXCC-1]
Length = 388
Score = 73.7 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/340 (11%), Positives = 108/340 (31%), Gaps = 25/340 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL Y + L + + L+++ + + S+ L +P +
Sbjct: 17 ILDGYMLRQLLLALVATTGALVTLIWLTQSLHFVSLVVGR-GLSLRVFLELTGLLIPSFV 75
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P T VV ++ L EL + +A G+S + P ++ + + + +++ I
Sbjct: 76 AVILPITTFVVVQFIYQRLGGDRELTVMQAAGLSPALMARPGLMCAAIATLVCLVLNVWI 135
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK-------KILPENHIW 176
Q ++ + ++I A+ I+ E+
Sbjct: 136 VPVSYHAFRQYEFQIRNRMAAFLIQDGV-FTQVSDNMTVYIRARDKDGTLHGIMVEDDRT 194
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK--- 233
+ + ++ ++ D +++N + + + +N+ L+ P
Sbjct: 195 PGAEATILAEEGNLVIINDQPRVVLFNGSRQEIDSHTGRLNVLTFTRNTIDLSSPHTAHT 254
Query: 234 --MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
D + Q ++ ++ + + + P + +I
Sbjct: 255 RLPDANELSIAQLLHPDLHQYSRRDESKMF----------IEAWRRLSTPFCAFSFAMIG 304
Query: 292 ASVSLEFSRSNQPRI-IVAYGIFSGFMLYTIITIMKSFGK 330
++ S S Q I I + + + ++++
Sbjct: 305 LVGAMGGSHSRQAGIVRPVLAILAVVAVQALTLLVQNLAS 344
>gi|165976525|ref|YP_001652118.1| permease [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|165876626|gb|ABY69674.1| predicted permease [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
Length = 334
Score = 73.7 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 22/312 (7%)
Query: 51 GAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI 110
L +P + Q ++P V ++ SE+ + RA GI L SI
Sbjct: 15 VLSLLGLGMPALAQFMLPLSLFVALLLTLGRFYAESEITVMRACGIGKSLLTKVAFFLSI 74
Query: 111 LLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL 170
V + + +++ + K N +M + + I
Sbjct: 75 FTTALAVYNVFWLTPWAINKQSEMLAEAKSNPRFSALSAGQFMTAGG----YVLFIENIN 130
Query: 171 PENHIWEDFTSITIDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKN 224
E + D D++ K A+ + + + L+ Y+ D
Sbjct: 131 NEQNKLNDIYVFQPDQQKKNRPSVVVAESGQLQGLPNGDQILTLENSTRYEGTANVADFR 190
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
+ + G+Q + K M+ + + +F ++ +PL
Sbjct: 191 ISHFDSYQAYLGYQDVDSNEKLVQRADFNKLMADQSNEA---KAELQWRFALILAVPL-- 245
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP- 343
M L+A +S R + ++ + + + + + +KS G SG L L+P
Sbjct: 246 --MALLAVPMSSVNPRQGRFAKVI-PAVLLYLIYFLLQSSLKSSGASGKLDATL--LMPL 300
Query: 344 -VILTISLSILI 354
I L++++
Sbjct: 301 VSIAFFILAMVM 312
>gi|121997477|ref|YP_001002264.1| permease [Halorhodospira halophila SL1]
gi|121588882|gb|ABM61462.1| permease YjgP/YjgQ family protein [Halorhodospira halophila SL1]
Length = 372
Score = 73.7 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/357 (11%), Positives = 120/357 (33%), Gaps = 20/357 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATRVPL 61
I+ RY + L L ++ L + G+LP +++ L R
Sbjct: 10 IIDRYLVREAAGAALAVLAVLFAVLSANQLIDYLADAAGGDLPGEAVAALMGLQILR--- 66
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +IP + ++ L R SEL + A G+ + + ++ ++ + + +
Sbjct: 67 YLGVVIPAALFLGIVLALGRLYRDSELPVLAACGVGPARQMRGLLLLALPVAVGVGALST 126
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A +Q D + + A + + + +
Sbjct: 127 VAAPWASHTADVYAEQAARTADLGALQAG---RFIGGGDAGTVYASRTDGDG-VLREV-- 180
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ AD D ++ ++ G + + ++ F +
Sbjct: 181 FAHARDGELETVIRADRGRQLIDPETGQRFFVFEDGH---RYDGHPGQLDWRVTDFDRHG 237
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAE--TQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+R E+ + + + ++ + + + + +P+M+V ++L+A ++
Sbjct: 238 LLIDTREPREVSRDREGTPTAELWAAGGLQDRAEIEWRLSMPVMVVVLSLLAVPLAKAEP 297
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + + + +++ + + ++GI+ + + + ++L
Sbjct: 298 RDGRYGK-LLSAVLVFVAYFQLLSSGREWLEAGIVPAPLGLW---WVHLLAGVAVVL 350
>gi|158425949|ref|YP_001527241.1| putative permease precursor [Azorhizobium caulinodans ORS 571]
gi|158332838|dbj|BAF90323.1| putative permease precursor [Azorhizobium caulinodans ORS 571]
Length = 387
Score = 73.7 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 1/138 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G L RY F + L +++ + + +I + + +P +
Sbjct: 2 GRLDRYIFSTSAVAFVGVTLVLTGMIWATQALRQLDLVTS-QGQTILAFLAITSLTLPTL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I I P + LN SE+V+ A G+S W++L ++ ++L +F +
Sbjct: 61 IMVIAPAALFIATSYTLLKLNGDSEIVVMAAAGMSPWRVLRSLMLLAVLASVFCSALSIH 120
Query: 123 IATSGEKIGIDLIQQWKD 140
I + + D + + +
Sbjct: 121 IVPASLRSFRDQVSRVRA 138
>gi|144897578|emb|CAM74442.1| conserved hypothetical protein, membrane [Magnetospirillum
gryphiswaldense MSR-1]
Length = 373
Score = 73.7 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 51/332 (15%), Positives = 120/332 (36%), Gaps = 31/332 (9%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M GI RYF + L+ ++++ + + S++ L +P
Sbjct: 1 MTGI-TRYFLRQLAVGMLFVSAALTCVLWLTQSLRLIEMIVN-QGISVTTFLKLTGMLMP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IIP V + + LN ELV+ RA G+S W L P ++ + + I ++
Sbjct: 59 SFLVVIIPIALFAVILFTYNKLNTDRELVVLRAAGLSNWALAKPALILAGIATIMGYVLS 118
Query: 121 NPIATSGEKIGIDLIQQWKD----------NGDKQKSDIIPWMQISNPQQD---IFIGAK 167
I + ++ ++ +K + +++ + + + + K
Sbjct: 119 VWIIPQTVQNFREVQWSIRNDISNLLLQEGTFNKFGKGVTIYVRTRTSEGELLGLLVHDK 178
Query: 168 KI-LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNST 226
+ + + ++ + I + + + + +L ++ +S
Sbjct: 179 RSPTKPVTLMAEKGALVFTETGPRILMVNGNRQQLPDGTGQLSV----------LNFDSY 228
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
T+++ + S E++ + + + RA+ + + + PL +
Sbjct: 229 TVDLSMSGGDNGSRFRDARELSMAELLN--ADEAQMGVTDYRRAKGELHQRLTSPLYSLG 286
Query: 287 MTLIAAS--VSLEFSRSNQP-RIIVAYGIFSG 315
TLIA + ++ F R Q I+ A G+ G
Sbjct: 287 YTLIALATLLTAGFDRRGQTVTILTAIGLMVG 318
>gi|145300687|ref|YP_001143528.1| permease [Aeromonas salmonicida subsp. salmonicida A449]
gi|142853459|gb|ABO91780.1| predicted permease [Aeromonas salmonicida subsp. salmonicida A449]
Length = 370
Score = 73.7 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/316 (12%), Positives = 110/316 (34%), Gaps = 21/316 (6%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I++RY F+ LKT L L +++ +I + + L +
Sbjct: 1 MTVIVFRYLFRETLKTQLAVLFVLLLIFVSQQFIKIIGDAAD-GEVPTRLVSTLLLLNLS 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ ++P + + L SE+ + A+G S ++ +V ++L
Sbjct: 60 NMALLMLPISLFLAILFAHGRLYAESEMTVLHAVGFSHRFVMRCAMVLALLTAAVAAFNT 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
IA ++ +I ++K + +M++ + + +++ + + +
Sbjct: 120 GWIAPQAKEREYQVIDEFKADPGISFLQAGRFMEL--DKGRLVAYIQELNDKASLLQKIF 177
Query: 181 SITIDKKNKIIHRKDADLAIIYND----KV-KLKKVVEYQ---YGRIPIDKNSTTLNIPI 232
+ K A ++ D + LK Y+ R ++ I
Sbjct: 178 VLQRSHDGKPPSVVVATEGVVTLDSNGLQWLTLKDGSRYEGHFSTRQFQISEFDEYSLVI 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ ++ + + A+R +++ + + + I +PL ++ +T +
Sbjct: 238 RQQEMERSNRKAAARPTVDLLGTQDNGMMA----------ELQWRISLPLSILVLTFLVV 287
Query: 293 SVSLEFSRSNQPRIIV 308
++ R + ++
Sbjct: 288 PLARVNPRQGRYAKLL 303
>gi|218296306|ref|ZP_03497062.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
gi|218243378|gb|EED09908.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
Length = 336
Score = 73.3 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 45/338 (13%), Positives = 105/338 (31%), Gaps = 25/338 (7%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY K L + M L+ DL + + +L R+P +
Sbjct: 2 LGRYVLKEVLLPYGVGVFLFMALL-TFDLLSSLSGVFLSRGAGAEAILLLVLYRLPWTLS 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + +V L R SEL + A G+ LL P ++ S+L+ + + + +
Sbjct: 61 LALPLGLVFAILVGLSRLIRHSELKAAYAAGVPPLALLKPLLLLSLLVALVNLYNLAEVR 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNP-QQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + + + A++++PE +
Sbjct: 121 PRALEAYDRALARLLYG---EGGPSGVLRRQVYALEGQGVYYAEEVVPEVGQNRLYGLRV 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+D+K +I A + + + + G++ + + +
Sbjct: 178 VDEKGRIYS---AKEGVWDREGWQFLG-YVLEEGKLKPFQGILPFPALFRPKESLGSKDP 233
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL--MLVAMTLIAASVSLEFSRS 301
+ S + E+ ++ + + + L + A +SL +
Sbjct: 234 YDSSTLEELWQRARVEPAA--------RFALHRRLADALGGFFLGFAAAALGLSLREA-- 283
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
+ F Y + T+ + + P+ A
Sbjct: 284 ---AWAFLGVVLLIFGYYVLWTLSAQLAR-YDVSPLLA 317
>gi|226946453|ref|YP_002801526.1| YjgP/YjgQ family permease [Azotobacter vinelandii DJ]
gi|226721380|gb|ACO80551.1| permease YjgP/YjgQ family [Azotobacter vinelandii DJ]
Length = 357
Score = 73.3 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 45/360 (12%), Positives = 120/360 (33%), Gaps = 21/360 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY + L +LG + +F E S + +V + +
Sbjct: 3 LIERYVISE-ARRPLLVMLGILTSIFAAYSAERYLGEAANGTLSPEVVFDIVVYKVMIAL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ ++P V + L SE+ A G+S +L + ++ + + +
Sbjct: 62 EVLVPVALYVSVALGLGRLYHDSEITAVAAAGMSPLRLYGAVAILALPIAVGVTALSLYG 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS-NPQQDIFIGAKKILPENHIWEDFTSI 182
L Q+ K D D + + + N + I A+++ +D
Sbjct: 122 RPWAYANAYQLEQESKTELDI---DHLLAERFNINAENGRMILAERVDRATDSLQDVLIF 178
Query: 183 TIDKKN-KIIHRKDADLAIIYNDK--VKLKKVVEYQYGRI-PIDKNSTTLNIPIKMDGFQ 238
+ ++ ++A +A D V++ Y DK + I + +
Sbjct: 179 DGGESRTRLYRSQEARIADPDPDDPVVEMTNGTAYSLQHDGTQDKRIEFKRLNIHLQPLE 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
E + ++ ++ + + + + + + + L+A +S
Sbjct: 239 TNMESRRKAASWQTLEASAGLPE---------QAELQWRESRGVSTFILALLAIPLSRTA 289
Query: 299 SRSNQPRIIV-AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + ++ +++ +++ I KS +G L + + + + ++++
Sbjct: 290 PRRGRFATLLPVTAVYA--VIFYAGDICKSLVGNGSLPLTPGLWLVPLAMGLVLLALIVR 347
>gi|113868946|ref|YP_727435.1| permease [Ralstonia eutropha H16]
gi|113527722|emb|CAJ94067.1| predicted permease [Ralstonia eutropha H16]
Length = 375
Score = 73.3 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 54/359 (15%), Positives = 118/359 (32%), Gaps = 27/359 (7%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
+ L T + M+ + L M S + +L + ++
Sbjct: 7 LRRELAYTAGAVFLVMLTFMLTSLVIRILGMAASGKASPNDVLMLIGLATIGYLSILLSA 66
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIW-------QLLNPFVVGSILLGIFTVLVINP 122
+ ++V + SE+V+ + GIS+ Q PF+V ++LLG+F N
Sbjct: 67 TLFISTLIVLTRWYKDSEMVVWFSAGISLRELVKPVLQFAAPFIVLALLLGMFAWPWANQ 126
Query: 123 IATSGEKIGID--LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ + + + I D+ A+ + N +
Sbjct: 127 QSALFRDRFEQRGVMSMIAAGRFIEPAKANYVLFIEGIDADMK-HARNVFVANSEADKI- 184
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL-NIPIKMDGFQK 239
+ + + K + + V ++ Y ID +K+D
Sbjct: 185 GVALAHQGKFETMPN------GDRLVVMENGRRYSGMPGQIDYRIVEFERYAVKVDNKAP 238
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
SE + I+ + + N+ I +P++ +IA ++
Sbjct: 239 ESEAKLPPKSRDTIELIRNPTRENLGELIW-------RISLPILAFNFVMIAIPLAYVNP 291
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
R + +V + +I + +S+ +SG + A P+ L + L L+L +
Sbjct: 292 RLGRYTPLVF-AVLIYLTYSNLINLTQSWVRSGAIPFWLA-WWPIHLAVFLGALLLFRY 348
>gi|107103348|ref|ZP_01367266.1| hypothetical protein PaerPA_01004417 [Pseudomonas aeruginosa PACS2]
Length = 362
Score = 73.3 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 47/350 (13%), Positives = 110/350 (31%), Gaps = 18/350 (5%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
L T ++++ + Q + ++ A R+P +Q I+P +
Sbjct: 2 LVTMSAVSAVLLVIIMSGRFIKYLAQAAQ-GLLDPGSLFLIMAFRIPGFLQLILPLGLFL 60
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
++ + L SE+ + A G+S +LL + ++L+ I + +A G
Sbjct: 61 GILLAYGRLYLESEMTVLSATGMSQKRLLGYTMAPALLVAILVAWLSLFLAPQGINQFAL 120
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID----KKNK 189
L+ + + ++P + +++ + D + +
Sbjct: 121 LLNKQDTLTEFDT--LVPGRFQAMRDGTRVTYTEELSKDRGELAGIFISQKDLNSSNQER 178
Query: 190 IIHRKDADLAIIY---NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
I A+ + L Y+Y P N + K
Sbjct: 179 GISILVAEKGTQNIQADGSRYLILHNGYRYDGNPGQANYRAIQYDTYGVMLPKPEASSEV 238
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI 306
+ F N R + + + + PL++ +TL+A +S + +
Sbjct: 239 SERDAVPTADLF-----GSDNPRYQAELQWRLSTPLLVFVVTLLAVPLS-RVNPRQGRFL 292
Query: 307 IVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ I ++ ++ G + + + L+I +LL
Sbjct: 293 KLLPAILLYMGYLALLIAVRGQLDKGKIPMAIGLWW--VHGLFLAIGLLL 340
>gi|46143410|ref|ZP_00135308.2| COG0795: Predicted permeases [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|126208575|ref|YP_001053800.1| hypothetical protein APL_1103 [Actinobacillus pleuropneumoniae L20]
gi|307246019|ref|ZP_07528101.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307248123|ref|ZP_07530151.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|307250354|ref|ZP_07532303.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|307252738|ref|ZP_07534629.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307255000|ref|ZP_07536818.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307257154|ref|ZP_07538926.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 10 str. D13039]
gi|307259436|ref|ZP_07541161.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
gi|307261582|ref|ZP_07543250.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|307263771|ref|ZP_07545377.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
gi|126097367|gb|ABN74195.1| hypothetical protein APL_1103 [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|306852954|gb|EFM85177.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|306855300|gb|EFM87475.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|306857629|gb|EFM89736.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306859770|gb|EFM91792.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306861873|gb|EFM93849.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306864316|gb|EFM96227.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 10 str. D13039]
gi|306866372|gb|EFM98235.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
gi|306868705|gb|EFN00514.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|306870892|gb|EFN02630.1| Lipopolysaccharide export system permease protein lptF
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
Length = 343
Score = 73.3 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 22/312 (7%)
Query: 51 GAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI 110
L +P + Q ++P V ++ SE+ + RA GI L SI
Sbjct: 24 VLSLLGLGMPALAQFMLPLSLFVALLLTLGRFYAESEITVMRACGIGKSLLTKVAFFLSI 83
Query: 111 LLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL 170
V + + +++ + K N +M + + I
Sbjct: 84 FTTALAVYNVFWLTPWAINKQSEMLAEAKSNPRFSALSAGQFMTAGG----YVLFIENIN 139
Query: 171 PENHIWEDFTSITIDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKN 224
E + D D++ K A+ + + + L+ Y+ D
Sbjct: 140 NEQNKLNDIYVFQPDQQKKNRPSVVVAESGQLQGLPNGDQILTLENSTRYEGTANVADFR 199
Query: 225 STTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
+ + G+Q + K M+ + + +F ++ +PL
Sbjct: 200 ISHFDSYQAYLGYQDVDSNEKLVQRADFNKLMADQSNEA---KAELQWRFALILAVPL-- 254
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP- 343
M L+A +S R + ++ + + + + + +KS G SG L L+P
Sbjct: 255 --MALLAVPMSSVNPRQGRFAKVI-PAVLLYLIYFLLQSSLKSSGASGKLDATL--LMPL 309
Query: 344 -VILTISLSILI 354
I L++++
Sbjct: 310 VSIAFFILAMVM 321
>gi|49475339|ref|YP_033380.1| hypothetical protein BH05450 [Bartonella henselae str. Houston-1]
gi|49238145|emb|CAF27353.1| hypothetical protein BH05450 [Bartonella henselae str. Houston-1]
Length = 396
Score = 73.3 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 54/362 (14%), Positives = 126/362 (34%), Gaps = 17/362 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ Y K L ++ A+ + + + + N + ++ + + VP +I
Sbjct: 3 IIELYILKRILILFSAVMIAAIGISWTVQILARINFLTT-SKQTLLTILQFSISLVPSVI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IPF L+ +N+ SEL I A G + P ++ + + + + N +
Sbjct: 62 FLVIPFALLIAITSTLSAMNQDSELAIISASGFPKSTVWRPILLIAFVASCASFFIANFV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ + + +++N +++I + P+ + F +
Sbjct: 122 IPQARLNMRQMLATTHYDLINLFISEGSFQKLAN---NLYIEIGQRNPDGTLAHLFIADQ 178
Query: 184 IDKK-NKIIHRKDADLAIIYND-KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
D K + + A + N + L + + + +F
Sbjct: 179 RDPKIDLFYYATKASVVSNKNGHFLVLNNGEIERINHQNDSVSIVQFSSYT--FSLGEFI 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNY------RAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + Y + +S+ N Y + +F+ + L + +LIA + +
Sbjct: 237 PNDKTPTLYPKDRPLSYLRNPNPKDLYYQRKPLQYRAEFHRRLTEWLYPIVFSLIALAAA 296
Query: 296 LEFSRS-NQPRIIV-AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+RS Q I F++Y I KS + +IP+ ++I + +
Sbjct: 297 -GDTRSYRQVGNSANFSAIAFSFLVYWIGYFAAEKAKSDLAYVPLLYIIPIGVSILVFFM 355
Query: 354 IL 355
+L
Sbjct: 356 LL 357
>gi|90423816|ref|YP_532186.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
gi|90105830|gb|ABD87867.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
Length = 388
Score = 73.3 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 48/331 (14%), Positives = 110/331 (33%), Gaps = 30/331 (9%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G + Y F+ L + L ++++ + M +I L VP++
Sbjct: 2 GSIDSYIFRTTLTSFAVILASLTGVIWITQALRGIDLMTS-QGQTILTFLGLTGMAVPVL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I P ++ L SE+++ A G+S +L+ PF+ S+++ I +
Sbjct: 61 VLVIAPIALMIAVAHTLNRLANDSEIIVMNAAGLSPLRLVRPFMFASVVVAILVGFISAY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A G + + + + S + ++ I ++ P + +
Sbjct: 121 VAPEGLRRINRWDSEITADILANILQPG---RFSQLETNLTIRVRERQPGGVL----VGV 173
Query: 183 TIDKKNKIIHRKD--ADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNI----PI 232
ID + R AD + + L+ ++ D
Sbjct: 174 FIDDRRDPNERISIIADHGTVLKNNDGSFLVLEDGTLQRFESGKRDPALVAFGRYAFDMS 233
Query: 233 KMDGFQKFSEQFASRSFYE-IIKKMSFSNKSNIFHNYRAETQFYFLIVIP-----LMLVA 286
K + S R +E + + + + + + +RAE + ++ P +
Sbjct: 234 KFSRARDVSYGIRERYLWELLWPEPDDALYARLPNQFRAE--MHDRVLAPIYPFVFAALT 291
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ + SR+ +A I + F+
Sbjct: 292 FAFLGLPRTTRQSRN----FSMAGAIAAVFV 318
>gi|326574663|gb|EGE24599.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis 101P30B1]
Length = 437
Score = 73.3 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 59/377 (15%), Positives = 131/377 (34%), Gaps = 34/377 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY TT L ++++ L E ++ L P +
Sbjct: 57 ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAE-GGLNVGVLFRLIGYNFPYFL 115
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++VF L E+ + A GIS ++ + ++L V
Sbjct: 116 ELILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVA 175
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + ++ W++ Q D+I Q D + ++ +D I
Sbjct: 176 KPWGMERATNI---WQEQSVAQVFDLIR-PQEFISSGDYHLYVGEMGANREFLKDVIIIQ 231
Query: 184 I--DKKNKIIHR--------KDADLAII---YNDKVK--LKKVVEYQYGRIPIDKNS--- 225
+ + + I R A A N +++ L++ Y+ +
Sbjct: 232 MHTAEPSDIQSRQSHQRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGF 291
Query: 226 --TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + +K + S E++ + S + A + + + +P +
Sbjct: 292 ERYRMTLSVKP-PEGTSHIRIEGVSTTELLSII--QGHSKRDNPQEAYAELGYRLSMPWL 348
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV--AAAL 341
++ L+A +S R + +V + + +I++ + K G L PV AAL
Sbjct: 349 ILLAILLATPLSYVRPRQGRWYKLVPAILIYVAGVLVVISLKDTIAK-GKLSPVIYLAAL 407
Query: 342 IPVILTISLSILILLQK 358
++ + +++ + +
Sbjct: 408 ---LMMMVVAMYLNYHQ 421
>gi|225627184|ref|ZP_03785222.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|260168438|ref|ZP_05755249.1| hypothetical protein BruF5_08728 [Brucella sp. F5/99]
gi|261757900|ref|ZP_06001609.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
gi|225618019|gb|EEH15063.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|261737884|gb|EEY25880.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
Length = 402
Score = 73.3 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 50/362 (13%), Positives = 121/362 (33%), Gaps = 25/362 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L A+ + + + + + N + + ++ +P I ++
Sbjct: 7 YILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTT-SGQTFQTIVQFSSLLIPSAIPLVM 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N +
Sbjct: 66 PFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANYVEPYA 125
Query: 128 --------EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
DL+ G +K ++Q++ + D IG I D
Sbjct: 126 RINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRDPTLD- 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I I D+ ++ N +V+ + V + I D + ++ F
Sbjct: 185 -LIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAF------DLNQFAS 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYR---AETQFYFLIVI---PLMLVAMTLIAAS 293
+ F + + + + ++ R + + + PL+ AM +A +
Sbjct: 238 AGDDFVIFAKDRPLTYLLNPDSNDPMLQTRPLTYKAELHRRFTQWIYPLIF-AMIALAIA 296
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + I + ++Y + L+P+++ + +
Sbjct: 297 GDFRSHREARVSAS-FSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFI 355
Query: 354 IL 355
+L
Sbjct: 356 LL 357
>gi|83942394|ref|ZP_00954855.1| membrane protein, putative [Sulfitobacter sp. EE-36]
gi|83846487|gb|EAP84363.1| membrane protein, putative [Sulfitobacter sp. EE-36]
Length = 376
Score = 73.3 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/328 (12%), Positives = 106/328 (32%), Gaps = 32/328 (9%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY +L +F L + + ++ + +++ + +P +I
Sbjct: 5 DRYMLSQFLILFSFFALILVAIFWINRAVVLFDRLIG-DGQTALVFLEFTVLGLPKLITT 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P T ++ V + SEL + +A G S W+L P V + + I ++ + +
Sbjct: 64 VLPIATFAGSVYVINRMTSESELTVLQATGTSPWRLARPVFVYGLCVAIMMSVLTHLLLP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWM----------QISNPQQ---DIFIGAKKILPE 172
+ + N + ++ ++ + D+F+ ++ E
Sbjct: 124 LSNGQLSEREAEISQNVTARLLTEGTFLHPTSKVTFYTRVIDADGVLRDVFLSDRRNPDE 183
Query: 173 NHIWEDFTSITI-DKKNKIIHRKDADLAIIYNDKVKLKKV--VEYQYGRIPIDKNSTTLN 229
I+ + I + + D + +L ++ + + +
Sbjct: 184 GVIYTASEAYLIRNGDGTTLIMVDGMAQRLEMAGKRLSTAKFRDFSFDISALVSSD---- 239
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ + + + ++ KS + + +
Sbjct: 240 -----KPRTQSIDAMTTAEMFAQWDQLETITKS---SAGEIAEELTARFASAAFCMIAAM 291
Query: 290 IA-ASVSL-EFSRSNQPR-IIVAYGIFS 314
I A++ L FSR R I++A+G+
Sbjct: 292 IGYATLVLGGFSRFGVWREIVIAFGLLI 319
>gi|209548671|ref|YP_002280588.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534427|gb|ACI54362.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 393
Score = 73.3 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 46/324 (14%), Positives = 124/324 (38%), Gaps = 16/324 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L Y + + L LL + +++ + + N + + SI A LA +P I
Sbjct: 2 KLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPSI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I ++PF ++ +N SEL + A G L+ P ++ + ++ +F+ V N
Sbjct: 61 IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAVVSVFSFFVDNV 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + +I + S +I + +++ K + + F +
Sbjct: 121 VEPRAKTVVRQMIAE---TYADLLSSVIEEKTFRKLDEGLYVQISKRMAGRMLKGLFVAD 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKL-----KKVVEYQYGRIPI-DKNSTTLNIPIKMDG 236
D ++I+ A + + L + + G + + + +S + ++ +
Sbjct: 178 ERDPAYELIY--YAKEGAVDDTGTTLIMHEGEVHRKTPDGNVSVINFDSYSFDLSDMTEN 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + + R + ++ ++K + + + ++ V L + +++
Sbjct: 236 RGQATLRASDRDLWFLLN-PDPADKDYTIRPQSYRAELHRRLTDWILPVVFALFSLAIA- 293
Query: 297 EFSRSNQPRII--VAYGIFSGFML 318
+RS++ + + + F L
Sbjct: 294 GDARSHREARLHPMVSALAYAFAL 317
>gi|114319720|ref|YP_741403.1| permease YjgP/YjgQ family protein [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226114|gb|ABI55913.1| permease YjgP/YjgQ family protein [Alkalilimnicola ehrlichii
MLHE-1]
Length = 372
Score = 73.3 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 46/361 (12%), Positives = 112/361 (31%), Gaps = 17/361 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
++ RY + L L LL ++ L L +
Sbjct: 6 IPVVDRYLVREVLFAWLAVLLVLFAVLATNRLIGYLGDAAG-GELPGGVILTLLGLQTVR 64
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P + ++ F L R SE+ + A GI W+ + ++ L L+
Sbjct: 65 YLGMILPASFFLGIVLAFGRLYRDSEMAVMSACGIGPWRQFRALLWLALPLAGLVGLLSL 124
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + + + ++Q + + +++ + ED
Sbjct: 125 YWGPAATQKAEQVQAEAEAQVEFAALQAGRFLQARGATEGT-LYLERLSEDQREMEDVFI 183
Query: 182 ITIDKKNKIIHRKDADLAIIY------NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
++++ A + + + L Y D T +
Sbjct: 184 RAGGTADRVV--LAARRGVQEKDPETGDRYLVLLDGWRYDGRPGAADWRVTRFERHGVLV 241
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
R + ++ S+ RAE Q+ + +P M + + L+A +S
Sbjct: 242 AEGSEEVAVRLRRNAQPTAELWGSDH----PADRAEVQW--RLAMPAMTLLLALLAVPLS 295
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + + + +T+ + + ++G + +++ +L L
Sbjct: 296 KSAPRDGRYG-RLLSAVLVYVGYFQFLTVGQDWLETGQVPAALGLWWLHGAVLAVGVLGL 354
Query: 356 L 356
L
Sbjct: 355 L 355
>gi|329118130|ref|ZP_08246842.1| YjgP/YjgQ family permease [Neisseria bacilliformis ATCC BAA-1200]
gi|327465790|gb|EGF12063.1| YjgP/YjgQ family permease [Neisseria bacilliformis ATCC BAA-1200]
Length = 431
Score = 73.3 bits (179), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/315 (12%), Positives = 106/315 (33%), Gaps = 18/315 (5%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
F K T + + + ++ + + + + + A++ + + ++
Sbjct: 74 FIKELTYTAVGIFVVILAVLVSTQAVNLLGRAADGRVAADAVAALIGFWTL-GMTPLLLV 132
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ + V R SE+ + + G+S+ Q L P + ++ + + E
Sbjct: 133 LTAYISVLTVLTRFWRDSEMAVWLSCGLSLKQWLRPVLAFALPFAALVAAMQLAVLPWAE 192
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ + K + + + + ++ + E+ + ++ D K
Sbjct: 193 LRSREFAELLKQKQELSLVEAGEFRTLGKRNGRVY-FVETFDTESGVMKNLFLREQDDKG 251
Query: 189 KIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTL---NIPIKMDGFQKFSEQ 243
+ + A + + K L+ Y+YG IP + + + ++ + + K
Sbjct: 252 R-ENVVFAKEGRFALTDHKRTLELTQGYRYGGIPGEADYNRVGFEHLSLVISTTPKIVNP 310
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
R + + N + + + + +PL V + ++A +S R+
Sbjct: 311 VDHRRTIPTARLI-------GSDNPQYRAELMWRVSLPLAAVILAILAVPLSYFNPRTGH 363
Query: 304 PRIIVAYGIFSGFML 318
I+ GF L
Sbjct: 364 TYNILF---AIGFFL 375
>gi|325499819|gb|EGC97678.1| hypothetical protein ECD227_3916 [Escherichia fergusonii ECD227]
Length = 335
Score = 73.3 bits (179), Expect = 6e-11, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 110/314 (35%), Gaps = 12/314 (3%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKGVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ GI + + + +++ + K N + Q +N +F
Sbjct: 70 AAMILALFTGIVAAINVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSAVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
I + ++D I K AD + +L+ +
Sbjct: 130 I----ESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTR 181
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN--YRAETQFYFLIVI 280
T L ++ FQ + ++ + + +++ RA + + + +
Sbjct: 182 FEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMTTLWNTDSDRARAELNWRLTL 241
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 242 IFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWM 300
Query: 341 LIPVILTISLSILI 354
++ ++L+I +
Sbjct: 301 WTVNLIYLALAIAL 314
>gi|325287934|ref|YP_004263724.1| permease YjgP/YjgQ family protein [Cellulophaga lytica DSM 7489]
gi|324323388|gb|ADY30853.1| permease YjgP/YjgQ family protein [Cellulophaga lytica DSM 7489]
Length = 478
Score = 73.3 bits (179), Expect = 6e-11, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSI--SRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRT 85
+ + I +G+L + +P +I +++P ++ +I+ F L
Sbjct: 1 MLIFIFQTIWLYIGDLAGKGLDLEIIGKFIFYFMPSLIDKVLPLTVVLSSILTFGTLAEN 60
Query: 86 SELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKD 140
E +A GIS+ + + ++ + LG+ N +A + +L + +
Sbjct: 61 YEFAAMKASGISLQRAMRTIIIFVLFLGVVAFFFANNVAPAAAHKIYNLKRNIGN 115
Score = 69.5 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ + + + + A + R + + I Y + + +
Sbjct: 360 HILALHSKYALAFSCIILFFVGAPLGA-IIRKGGMGLPMVIAIILFLAYYFLGVFVGNSA 418
Query: 330 KSGILLPVAAALIPVILTISLSILI 354
K G + P AA IP ++ + L + +
Sbjct: 419 KVGKIPPALAAWIPTLVMLPLGVFL 443
>gi|320451335|ref|YP_004203431.1| hypothetical protein TSC_c22800 [Thermus scotoductus SA-01]
gi|320151504|gb|ADW22882.1| hypothetical membrane spanning protein [Thermus scotoductus SA-01]
Length = 347
Score = 73.0 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 48/350 (13%), Positives = 108/350 (30%), Gaps = 24/350 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY + L L ++L+F+ + R P
Sbjct: 2 KTLDRYLLREVL-AHFSLGLAVIVLLFLAGAVYEVLAPLVAKGADPYTLLLYLFYRTPEA 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + P L + + L SEL A+GI ++L P + LL + L+
Sbjct: 61 LVRGAPVAYLFALLFLLSRLGEDSELKALLALGIRRERVLLPLLGLGALLALLGFLLGES 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G DL++ + ++ ++ + P + + + + +
Sbjct: 121 LVPKALAQGQDLLR--RQVLERPRALLTPGTTFQDARGRVVYVGEVARDRIGKLRILSQ- 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIP-----IDKNSTTLNIPIKMDG 236
A+ ++++K G P + L + +
Sbjct: 178 --------EEVVLAEEGRFQGGVLQVEKGLRVTYEGDRPRTLTRFQEGELVLR-DLTFEP 228
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+Q + + + E ++++ S Y P + L A ++
Sbjct: 229 WQNPANRMTLKELKEEVERLRKSGVKAGLEATTY----YRRYAEPAASLVFALFATGLAF 284
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
++ +V + + F Y ++ + G+ L P+ AA P +
Sbjct: 285 YLLGGSRSLGLVGVAVLT-FFYYATWSVGRIMGEQNALDPILAAWGPNLF 333
>gi|197287277|ref|YP_002153149.1| permease [Proteus mirabilis HI4320]
gi|194684764|emb|CAR46793.1| putative permease [Proteus mirabilis HI4320]
Length = 365
Score = 73.0 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 55/357 (15%), Positives = 133/357 (37%), Gaps = 19/357 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L M++ F L EI E N + L +P +
Sbjct: 2 IIIRYLARETLKSQIAILFILMLIFFSQKLVEILGAAVE-GNIPTNLVVSLLWLGIPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A GI L+ ++ S+L + + +
Sbjct: 61 QLILPLSLFLGLLMTYSKLYVESEITVMNACGIGKKALVQAALLLSLLTSVLAAGNVVWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+++ K N + + +++ + + + + ++D
Sbjct: 121 IPWSSVHQEQVLEDAKANPSLAALMEGQFKM--SSDRNMVLYLGSV--KGNQFQDVFLAQ 176
Query: 184 IDK-KNKIIHRKDADLA---IIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ +N+ AD + N +VV G T + ++ F
Sbjct: 177 LRPTQNQRPSVVVADKGYTKELPNG----NQVVVLSEG---TRYEGTAVLRDFRITDFTD 229
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE--TQFYFLIVIPLMLVAMTLIAASVSLE 297
+ R ++ + ++H+ E +F++ + + +V M L+ +S
Sbjct: 230 YQAVIGHRESTISRNRVEQKTMNELWHSTEPESIAEFHWRLTLIFSVVIMALMVVPLSEV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + + + ++S G+ G + P+ A + +L++L+
Sbjct: 290 NPRQGRV-LSMLPAMLLYLVFFLLQSSLRSSGEKGKVDPLIAMWTVNGIYFALALLL 345
>gi|146340304|ref|YP_001205352.1| putative permease [Bradyrhizobium sp. ORS278]
gi|146193110|emb|CAL77121.1| putative permease [Bradyrhizobium sp. ORS278]
Length = 389
Score = 73.0 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 31/192 (16%), Positives = 68/192 (35%), Gaps = 8/192 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G + RY F+ L + L+ ++++ + M +I + +P +
Sbjct: 2 GSIDRYIFRTTLASFALVLVSLTGVIWITQALRGIDLMTS-QGQTILTFLGITGLVIPSL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I P ++ L SE+++ A G+S +L PF + ++ + L+ +
Sbjct: 61 LGVIAPIALMIAVSHTLNKLATDSEIIVMNAAGMSPIRLFVPFAYATCVVALLVTLLASY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA G + + + + + Q++ I + P + I
Sbjct: 121 IAPDGLRRIKQWDAEITADVLTNILQPG---RFAQLDQNLTIRIGERQPGGELKN----I 173
Query: 183 TIDKKNKIIHRK 194
ID + R
Sbjct: 174 LIDDRRDPKERI 185
>gi|148559016|ref|YP_001258669.1| hypothetical protein BOV_0679 [Brucella ovis ATCC 25840]
gi|254707609|ref|ZP_05169437.1| hypothetical protein BpinM_11726 [Brucella pinnipedialis
M163/99/10]
gi|254709808|ref|ZP_05171619.1| hypothetical protein BpinB_05961 [Brucella pinnipedialis B2/94]
gi|256031299|ref|ZP_05444913.1| hypothetical protein BpinM2_11718 [Brucella pinnipedialis
M292/94/1]
gi|256159413|ref|ZP_05457191.1| hypothetical protein BcetM4_10693 [Brucella ceti M490/95/1]
gi|256254707|ref|ZP_05460243.1| hypothetical protein BcetB_10510 [Brucella ceti B1/94]
gi|261221887|ref|ZP_05936168.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
gi|261315099|ref|ZP_05954296.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M163/99/10]
gi|261317346|ref|ZP_05956543.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
gi|265988384|ref|ZP_06100941.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M292/94/1]
gi|265997850|ref|ZP_06110407.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
gi|148370273|gb|ABQ60252.1| putative membrane protein [Brucella ovis ATCC 25840]
gi|260920471|gb|EEX87124.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
gi|261296569|gb|EEY00066.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
gi|261304125|gb|EEY07622.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M163/99/10]
gi|262552318|gb|EEZ08308.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
gi|264660581|gb|EEZ30842.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
M292/94/1]
Length = 402
Score = 73.0 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 51/361 (14%), Positives = 117/361 (32%), Gaps = 23/361 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L A+ + + + + + N + + ++ +P I ++
Sbjct: 7 YILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTT-SGQTFQTIVQFSSLLIPSAIPLVM 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N +
Sbjct: 66 PFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANYVEPYA 125
Query: 128 --------EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
DL+ G +K ++Q++ + D IG I D
Sbjct: 126 RINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRDPTLD- 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGF 237
I I D+ ++ N +V+ + V + I D + LN D
Sbjct: 185 -LIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGDDFV 243
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHN---YRAETQFYFLIVIPLMLVAMTLIAASV 294
++ + + + R Y LI ++A+ + S
Sbjct: 244 IFAKDRPLTYLLNPDSNDPMLQTRPLTYKAELHRRFTQWIYPLI---FAMIALAIAGDSR 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S +R + ++ + Y + L+P+++ + ++
Sbjct: 301 SHREARVSASFSAISTALLV----YWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356
Query: 355 L 355
L
Sbjct: 357 L 357
>gi|240140389|ref|YP_002964868.1| putative permease [Methylobacterium extorquens AM1]
gi|240010365|gb|ACS41591.1| putative permease [Methylobacterium extorquens AM1]
Length = 389
Score = 73.0 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 1/136 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ L L L+G ++V + + ++ + A +P +I
Sbjct: 4 IERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAKGQ-TLLVFLFITALSLPTLIT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I P + + LN SEL++ A G+ QLL PF + + + + +
Sbjct: 63 VIAPVALFIACVYALNKLNGDSELIVMSAAGMPPRQLLRPFATLAFAISVVVAFLTIQVM 122
Query: 125 TSGEKIGIDLIQQWKD 140
S + D++ + +
Sbjct: 123 PSSFQELRDVLTRVRG 138
>gi|114776266|ref|ZP_01451311.1| hypothetical protein SPV1_01062 [Mariprofundus ferrooxydans PV-1]
gi|114553096|gb|EAU55494.1| hypothetical protein SPV1_01062 [Mariprofundus ferrooxydans PV-1]
Length = 386
Score = 73.0 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 51/365 (13%), Positives = 117/365 (32%), Gaps = 24/365 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L RY + +L L+ + ++ + ++ + + S L A +P +
Sbjct: 2 TLDRYMLRLWLGPFFGGLVFVLAVMLLARALKLLGTVSDTAEA-WSLIVDLLALTMPFFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
QI+P + L ++SE+ + R G+S ++ F + LL + +
Sbjct: 61 LQIVPMAFFLSLQNTITGLQQSSEMDVLRGSGLSYGRMFRVFFIVVPLLWLGLTYIAMVQ 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G+ +++ + K P + E+ I
Sbjct: 121 LPQGQLGFNNILAKI--YAMKGAISFAPQRFTRGLDGITV----YVDGEDSEGTYHGLIL 174
Query: 184 IDKKNKIIHRKDADLAIIYNDK----VKLKKVVEYQYGR-----IPIDKNSTTLNIPIKM 234
D + + A A +KLK V + + D+ ++ +P
Sbjct: 175 EDHRGGVSVIYTAKSARFDMGGEYLLLKLKDGVRLEGEGADQRMLAFDRYQVSIALPAGN 234
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
++ + E+ M S ++ +++P + + A +
Sbjct: 235 RKILHSNDHVTMMTVPELWHAMHNSQSGAAVA------EWNRRLLMPTTTLVLLFFALPL 288
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
SL RS + ++ GI M+Y + ++ G + + L + + +
Sbjct: 289 SLTQKRSGKAGSMIG-GIALLVMVYNLQLLLYQQVNQGGFPGW-SMWMGQALLLFTGMFL 346
Query: 355 LLQKE 359
+ E
Sbjct: 347 SKRAE 351
>gi|163853056|ref|YP_001641099.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
gi|218531866|ref|YP_002422682.1| permease YjgP/YjgQ family protein [Methylobacterium
chloromethanicum CM4]
gi|254562993|ref|YP_003070088.1| permease [Methylobacterium extorquens DM4]
gi|163664661|gb|ABY32028.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
gi|218524169|gb|ACK84754.1| permease YjgP/YjgQ family protein [Methylobacterium
chloromethanicum CM4]
gi|254270271|emb|CAX26267.1| putative permease [Methylobacterium extorquens DM4]
Length = 389
Score = 73.0 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 1/136 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ L L L+G ++V + + ++ + A +P +I
Sbjct: 4 IERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAKGQ-TLLVFLFITALSLPTLIT 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I P + + LN SEL++ A G+ QLL PF + + + + +
Sbjct: 63 VIAPVALFIACVYALNKLNGDSELIVMSAAGMPPRQLLRPFATLAFAISVVVAFLTIQVM 122
Query: 125 TSGEKIGIDLIQQWKD 140
S + D++ + +
Sbjct: 123 PSSFQELRDVLTRVRG 138
>gi|254447192|ref|ZP_05060659.1| permease YjgP/YjgQ family protein [gamma proteobacterium HTCC5015]
gi|198263331|gb|EDY87609.1| permease YjgP/YjgQ family protein [gamma proteobacterium HTCC5015]
Length = 353
Score = 73.0 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 42/361 (11%), Positives = 124/361 (34%), Gaps = 26/361 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I RY + K++ LL ++L+ L ++ + + N + L + +
Sbjct: 3 ITDRYLIREVAKSSAAVLLVLLVLMVGNTLVQLLSDAAD-GNMAPQYIWPLLVITLANYL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ + ++ F L + +E+ A G+ W P +I + + +++ I
Sbjct: 62 VLFMGLSLYLGGMLAFGRLYKDAEMAAMVACGMGPWDFFRPLFKVAIPISLAGLVLSVFI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + + ++ N F+ +
Sbjct: 122 LPWMAGLQAKFTSDAEKPSVETHLREGEFNELGN--GIFFV----EEQSGGALSQVFVYS 175
Query: 184 IDKKNKIIHRKDADLAIIYND----KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
D + I A+ + + ++ L++ YQ ++ +Q+
Sbjct: 176 RDPSGESIQV--AESGRVEDAPSGYELTLQQGRLYQINTEQRIRD----------IRYQE 223
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNI-FHNYRAET-QFYFLIVIPLMLVAMTLIAASVSLE 297
+ S + + ++ + S++ + E ++ + + +P+ + + ++A +S
Sbjct: 224 YEVMVESPNAVVDEQVLAATQTSDLMRSDNPLEVAEWQWRLSVPIGCLLLAVLAFPLSYT 283
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
R + Y I + +++ +S ++ + + ++L I +LL+
Sbjct: 284 SPRKG-AFSKLGYAILVYILYSNFLSLGRSLVQNQEVPLWLGMWWAHLPVLALIIGLLLR 342
Query: 358 K 358
+
Sbjct: 343 R 343
>gi|254458642|ref|ZP_05072066.1| permease YjgP/YjgQ [Campylobacterales bacterium GD 1]
gi|207084408|gb|EDZ61696.1| permease YjgP/YjgQ [Campylobacterales bacterium GD 1]
Length = 355
Score = 73.0 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 53/362 (14%), Positives = 123/362 (33%), Gaps = 34/362 (9%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
++Y +YLK L+ ++ + D E + S + + + I
Sbjct: 3 FKYISFHYLKYFSVILIALVMFLVGFDYMENA----SSLSSSANLVLIYLVYKAFFAIDM 58
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P + I L R++ LV ++G S +L PFVV S V+ ++ A
Sbjct: 59 LLPLSLIFAMITTKIFLIRSNALVSFYSLGYSRVDVLKPFVVVS---TTIIVIFVSLHAI 115
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ + N + + +I ++LP E +I
Sbjct: 116 PSFSRADEFSNNIRKNAAYLSPTKDLFFTYKDK----YIYFAQMLPLQERAEGIRVFSI- 170
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLN-----------IPIK 233
K+N + A A N+ + + V + + + ++ P
Sbjct: 171 KENSLKEVLVAKEATYRNESWHIAQADVITKPDNMSFESKGIKVDHEKGLDILHGFRPKM 230
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM---LVAMTLI 290
+D + F ++ + + +S N + + Y + + P LV +
Sbjct: 231 LDQVYEGKVNFTIKNAIDALLLLSDQN----INTRSIKGALYKIFIYPFFVPCLVVIIFF 286
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+S +R + I + +++ I+ ++ + + A + PV++ +
Sbjct: 287 FVPIS---ARFLNVSLFSFGAILATLLVWGILFMLIELSNNKTIPSEAGVVAPVVILFLI 343
Query: 351 SI 352
++
Sbjct: 344 AL 345
>gi|154491977|ref|ZP_02031603.1| hypothetical protein PARMER_01608 [Parabacteroides merdae ATCC
43184]
gi|154088218|gb|EDN87263.1| hypothetical protein PARMER_01608 [Parabacteroides merdae ATCC
43184]
Length = 655
Score = 73.0 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 29/204 (14%), Positives = 65/204 (31%), Gaps = 8/204 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSIS--RGAVLAAT 57
M I Y F L+T L L + I L + + ++ + A +
Sbjct: 1 MLKIKRLYTF--MLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGKGLGIPVLAEMFMY 58
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
++ +P L+ +++ F NL EL+ ++ G+S+ ++ P ++ ++ I
Sbjct: 59 AALFLVPMALPLAILLASLMTFGNLGERLELLAMKSAGVSLVHIMRPLIITISIISIGAF 118
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
N + L+ + + + + K E +
Sbjct: 119 FFQNYAMPVVQVKLYTLLWSMRQKSPELDIPEGVFYSEITG---FNVYVKHKDTETGLLR 175
Query: 178 DFTSITIDKKNKIIHRKDADLAII 201
D + + AD +
Sbjct: 176 DMMIYDYSEGFNKVSVMVADSGRL 199
Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 1/87 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R T+++ + + I A + R + V + Y I I
Sbjct: 390 RRHLTEWHKKFTLSFACMVFFFIGAPLGA-IIRKGGLGMPVVISVILFIFYYIIDNIGFK 448
Query: 328 FGKSGILLPVAAALIPVILTISLSILI 354
+ G+ + + L I +
Sbjct: 449 MARDGVWEAWQGMWLSSAILAPLGIFL 475
>gi|256420369|ref|YP_003121022.1| permease YjgP/YjgQ family protein [Chitinophaga pinensis DSM 2588]
gi|256035277|gb|ACU58821.1| permease YjgP/YjgQ family protein [Chitinophaga pinensis DSM 2588]
Length = 478
Score = 72.6 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 53/137 (38%), Gaps = 1/137 (0%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L + K ++ + + ++ + L + + + + ++ T ++
Sbjct: 4 LDKLLIKTFMGPFVATFFVTLFVLVMQFLWKYIDDLVGKGLDTPVIIELITYTSA-NLVS 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ +I+ F NL + ELV ++ GIS+ + + P + ++ I L N
Sbjct: 63 LALPLAVLLSSIMTFGNLGESFELVALKSSGISLTRFMRPLLAVCTMIAILAFLFNNYAM 122
Query: 125 TSGEKIGIDLIQQWKDN 141
L+ ++
Sbjct: 123 PVANLRAKSLLYDITNS 139
>gi|83952306|ref|ZP_00961038.1| Predicted permease [Roseovarius nubinhibens ISM]
gi|83837312|gb|EAP76609.1| Predicted permease [Roseovarius nubinhibens ISM]
Length = 372
Score = 72.6 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 47/303 (15%), Positives = 106/303 (34%), Gaps = 13/303 (4%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
++ +F L + + ++ + +++ S L A +P +I ++P
Sbjct: 1 MLSQFMVLFGFFALVLVSIFWINKAVRMFDRLISDGQSSFVF-LELTALTLPGVIAVVLP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ V L+ SEL + +A G S W+L P ++ +++ L+ + + +
Sbjct: 60 IAGFAGAVYVTNRLSTESELTVMQATGYSPWRLARPVLIYGVIVAAMMSLLTHVLVPTSL 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ N + ++ +P + ++I PE + + F S D +
Sbjct: 120 HRLETRKAEVSRNVTAKLLTEGEFL---HPAGGVTFYIREITPEGELRDVFLSDRRDIQA 176
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVEY-QYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+I+ + KL V Q + ++ TT D S+ +
Sbjct: 177 PVIYTSKMAYLVQEGGGTKLVMVNGLAQTAQTKGNRLFTTFFTDFSYDISGLISDDVINL 236
Query: 248 ------SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-ASVSLE-FS 299
S ++ + + + + + + LM V LI A++ L +S
Sbjct: 237 THARYASTPALMTRAAEIAQISGVSEGVVTLELHNRFAQALMCVVAALIGFATLLLGTYS 296
Query: 300 RSN 302
R
Sbjct: 297 RFG 299
>gi|62289649|ref|YP_221442.1| hypothetical protein BruAb1_0706 [Brucella abortus bv. 1 str.
9-941]
gi|82699577|ref|YP_414151.1| YjgP/YjgQ permease [Brucella melitensis biovar Abortus 2308]
gi|189023899|ref|YP_001934667.1| permease [Brucella abortus S19]
gi|237815139|ref|ZP_04594137.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|254688959|ref|ZP_05152213.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 6
str. 870]
gi|254697093|ref|ZP_05158921.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 2
str. 86/8/59]
gi|254729989|ref|ZP_05188567.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 4
str. 292]
gi|256257207|ref|ZP_05462743.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 9
str. C68]
gi|260545599|ref|ZP_05821340.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
gi|260754448|ref|ZP_05866796.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
gi|260757667|ref|ZP_05870015.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
gi|260761494|ref|ZP_05873837.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260883477|ref|ZP_05895091.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
gi|297248057|ref|ZP_06931775.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
gi|62195781|gb|AAX74081.1| hypothetical membrane protein [Brucella abortus bv. 1 str. 9-941]
gi|82615678|emb|CAJ10665.1| Predicted permease YjgP/YjgQ family [Brucella melitensis biovar
Abortus 2308]
gi|189019471|gb|ACD72193.1| Predicted permease YjgP/YjgQ family [Brucella abortus S19]
gi|237789976|gb|EEP64186.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|260097006|gb|EEW80881.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
gi|260667985|gb|EEX54925.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
gi|260671926|gb|EEX58747.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260674556|gb|EEX61377.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
gi|260873005|gb|EEX80074.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
gi|297175226|gb|EFH34573.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
Length = 402
Score = 72.6 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 51/361 (14%), Positives = 117/361 (32%), Gaps = 23/361 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L A+ + + + + + N + + ++ +P I ++
Sbjct: 7 YILRRVAIMFFAVLGAAVGITWAVQVLQRINFLTT-SGQTFQTIVQFSSLLIPSAIPLVM 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N +
Sbjct: 66 PFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANYVEPYA 125
Query: 128 --------EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
DL+ G +K ++Q++ + D IG I D
Sbjct: 126 RINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRDPTLD- 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGF 237
I I D+ ++ N +V+ + V + I D + LN D
Sbjct: 185 -LIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGDDFV 243
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHN---YRAETQFYFLIVIPLMLVAMTLIAASV 294
++ + + + R Y LI ++A+ + S
Sbjct: 244 IFAKDRPLTYLLNPDSNDPMLQTRPLTYKAELHRRFTQWIYPLI---FAMIALAIAGDSR 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S +R + ++ + Y + L+P+++ + ++
Sbjct: 301 SHREARVSASFSAISTALLV----YWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356
Query: 355 L 355
L
Sbjct: 357 L 357
>gi|294852049|ref|ZP_06792722.1| hypothetical protein BAZG_00965 [Brucella sp. NVSL 07-0026]
gi|294820638|gb|EFG37637.1| hypothetical protein BAZG_00965 [Brucella sp. NVSL 07-0026]
Length = 402
Score = 72.6 bits (177), Expect = 8e-11, Method: Composition-based stats.
Identities = 51/361 (14%), Positives = 117/361 (32%), Gaps = 23/361 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L A+ + + + + + N + + ++ +P I ++
Sbjct: 7 YILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTT-SGQTFQTIVQFSSLLIPSAIPLVM 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N +
Sbjct: 66 PFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANYVEPYA 125
Query: 128 --------EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
DL+ G +K ++Q++ + D IG I D
Sbjct: 126 RINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRDPTLD- 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGF 237
I I D+ ++ N +V+ + V + I D + LN D
Sbjct: 185 -LIYYAADGAIASMPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGDDFV 243
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHN---YRAETQFYFLIVIPLMLVAMTLIAASV 294
++ + + + R Y LI ++A+ + S
Sbjct: 244 IFAKDRPLTYLLNPDSNDPMLQTRPLTYKAELHRRFTQWIYPLI---FAMIALAIAGDSR 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S +R + ++ + Y + L+P+++ + ++
Sbjct: 301 SHREARVSASFSAISTALLV----YWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356
Query: 355 L 355
L
Sbjct: 357 L 357
>gi|17987545|ref|NP_540179.1| hypothetical protein BMEI1262 [Brucella melitensis bv. 1 str. 16M]
gi|225852207|ref|YP_002732440.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
gi|256044380|ref|ZP_05447284.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|256113223|ref|ZP_05454091.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
Ether]
gi|256264285|ref|ZP_05466817.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
63/9]
gi|260563732|ref|ZP_05834218.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
16M]
gi|265990798|ref|ZP_06103355.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|265994634|ref|ZP_06107191.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
Ether]
gi|17983248|gb|AAL52443.1| hypothetical membrane spanning protein [Brucella melitensis bv. 1
str. 16M]
gi|225640572|gb|ACO00486.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
gi|260153748|gb|EEW88840.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
16M]
gi|262765747|gb|EEZ11536.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
Ether]
gi|263001582|gb|EEZ14157.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|263094545|gb|EEZ18354.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
63/9]
Length = 402
Score = 72.6 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 52/361 (14%), Positives = 117/361 (32%), Gaps = 23/361 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L A+ + + + + + N + + ++ +P I ++
Sbjct: 7 YILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTT-SGQTFQTIVQFSSLLIPSAIPLVM 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N +
Sbjct: 66 PFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANYVEPYA 125
Query: 128 --------EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
DL+ G +K ++QI+ + D IG I D
Sbjct: 126 RINMRAMIANASADLMHVIIQEGTFRKLADNLYIQIAERRADGSIGGLFIADSCDPTLD- 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGF 237
I I D+ ++ N +V+ + V + I D + LN D
Sbjct: 185 -LIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGDDFV 243
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHN---YRAETQFYFLIVIPLMLVAMTLIAASV 294
++ + + + R Y LI ++A+ + S
Sbjct: 244 IFAKDRPLTYLLNPDSNDPMLQTRPLTYKAELHRRFTQWIYPLI---FAMIALAIAGDSR 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S +R + ++ + Y + L+P+++ + ++
Sbjct: 301 SHREARVSASFSAISTALLV----YWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356
Query: 355 L 355
L
Sbjct: 357 L 357
>gi|153827723|ref|ZP_01980390.1| inner membrane protein YjgP [Vibrio cholerae MZO-2]
gi|149737800|gb|EDM52705.1| inner membrane protein YjgP [Vibrio cholerae MZO-2]
Length = 199
Score = 72.6 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 23/188 (12%), Positives = 60/188 (31%), Gaps = 5/188 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + +K+ ++ + + S + +P +
Sbjct: 2 IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASD-GEIPTSMILSIVGLNMPAMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ +
Sbjct: 61 LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A + L++Q+ + + + +FI EN +
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFI----DNIENRKLYNVFVAQ 176
Query: 184 IDKKNKII 191
+ ++ I+
Sbjct: 177 LAPRDSIL 184
>gi|254693441|ref|ZP_05155269.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 3
str. Tulya]
gi|261213694|ref|ZP_05927975.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
Tulya]
gi|260915301|gb|EEX82162.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
Tulya]
Length = 402
Score = 72.6 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 51/361 (14%), Positives = 117/361 (32%), Gaps = 23/361 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L A+ + + + + + N + + ++ +P I ++
Sbjct: 7 YILRRVAFMFFAVLGAAVGITWAVQVLQRINFLTT-SGQTFQTIVQFSSLLIPSAIPLVM 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF ++ +N+ SELV+ A G ++ P ++ + + + + L+ N +
Sbjct: 66 PFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANYVEPYA 125
Query: 128 --------EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
DL+ G +K ++Q++ + D IG I D
Sbjct: 126 RINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRDPTLD- 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGF 237
I I D+ ++ N +V+ + V + I D + LN D
Sbjct: 185 -LIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGDDFV 243
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHN---YRAETQFYFLIVIPLMLVAMTLIAASV 294
++ + + + R Y LI ++A+ + S
Sbjct: 244 IFAKDRPLTYLLNPDSNDPMLQTRPLTYKAELHRRFTQWIYPLI---FAMIALAIAGDSR 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S +R + ++ + Y + L+P+++ + ++
Sbjct: 301 SHREARVSASFSAISTALLV----YWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356
Query: 355 L 355
L
Sbjct: 357 L 357
>gi|30468062|ref|NP_848949.1| probable permease YjgP/YjgQ family [Cyanidioschyzon merolae strain
10D]
gi|30409162|dbj|BAC76111.1| probable permease YjgP/YjgQ family [Cyanidioschyzon merolae strain
10D]
Length = 329
Score = 72.6 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 53/354 (14%), Positives = 119/354 (33%), Gaps = 44/354 (12%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVI-DLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I +Y + + LY L + L F L ++ Q+ + S+ + ++ L
Sbjct: 3 IFEQYIWSHLWTPFLYALSACLALTFSAGALVDVMRQITQ--GLSLDMACQILCLQLVLS 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I +P + I + NL +L+ R GI + + L P ++ ++G
Sbjct: 61 IHLGLPASCVFGGIFAYANL----DLMALRTSGIGVARWLKPSLIFGCMVGWLAWQWNEW 116
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
L Q ++ + + N + I K+ P +
Sbjct: 117 ALPLANYSLHKLQDQIQNQITSKA-----LVNQINHK---LIYVKEWKP----LHMNHCV 164
Query: 183 TIDKKNK---IIHRKDADLAIIYNDKVKLKKVVEYQYG---RIPIDKNSTTLNIPIKMDG 236
D + + + D D A K+VV YQ+ ++ + + + P
Sbjct: 165 MWDSEMNQLWMAKQIDWDGAR-----WIAKQVVHYQWDDQFQLQLQSHVAKMEWPTAWIS 219
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
Q++ + + + K+++ NK ++Y P+ + LI +S++
Sbjct: 220 QQQWQPMWMNVQTLKCYKQVAEFNK-------HIAIRYYQKYAFPISCGLLHLIGSSLA- 271
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+ + + F Y ++ +S + + A +P + +
Sbjct: 272 -----SVSKKGFILSLIVLFGYYLFGFGCEALAESSQMSALMAGWMP-VAGLFF 319
>gi|332558334|ref|ZP_08412656.1| permease [Rhodobacter sphaeroides WS8N]
gi|332276046|gb|EGJ21361.1| permease [Rhodobacter sphaeroides WS8N]
Length = 364
Score = 72.6 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 52/361 (14%), Positives = 125/361 (34%), Gaps = 40/361 (11%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRG------AVLAATRVPLIIQQIIPFITL 72
L G LV V L N+ L + IS G + +P +I+ ++P
Sbjct: 1 MALFGFFSLVLV--LVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNVIRLVLPLSAF 58
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
I V L++ SELV+ +A G S ++L P + +++ + ++++N + +
Sbjct: 59 AATIYVVNRLSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNLLVPASRATLS 118
Query: 133 DLIQQWKDNGDKQ----------KSDIIPWMQISNPQQ---DIFIGAKKILPENHIWEDF 179
+ N + + +++ D+ + + + +
Sbjct: 119 ARSAEISQNATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRDPARSTAYTAR 178
Query: 180 TSITIDKKNKIIHR-KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
++ + D + + +L+ ++ + D + K +
Sbjct: 179 RALLVRTDTTPKLLMIDGSAQTLTREGRRLE---LTRFDDVTYDLGAFMTGSGPKRRVLE 235
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-ASVSLE 297
+ E++++ + + ++ + I P + A +LI A++ L
Sbjct: 236 ELPTMTLLAPTAEVLEETRSTRAAALYEG-------HSRIGQPFLGFASSLIGFAALLLG 288
Query: 298 -FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG--ILLPVAAALIPVILTISLSILI 354
FSR + + + ++ TI G + + AA + ++ IL+
Sbjct: 289 SFSRFG-LWWQILFAVLLLIVVQTINVAASGVGVTDEQLWPLAYAA---PVTGFAIGILL 344
Query: 355 L 355
L
Sbjct: 345 L 345
>gi|330874292|gb|EGH08441.1| hypothetical protein Pgy4_05802 [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 328
Score = 72.6 bits (177), Expect = 9e-11, Method: Composition-based stats.
Identities = 52/316 (16%), Positives = 109/316 (34%), Gaps = 22/316 (6%)
Query: 51 GAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI 110
++ R+P +Q I+P + ++ + L SE+ + A G+S +LL + +
Sbjct: 1 MFLIMGFRLPGFLQVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAT 60
Query: 111 LLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL 170
L+G+ + +A G LI + + + ++P + K++
Sbjct: 61 LVGLLVAWLSFSLAPQGATQFSLLINKQ--DAMTEFDTLVPGRFQALRDGTRITYTKELS 118
Query: 171 PENHIWEDFTS----ITIDK-KNKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIP 220
+ ++ DK K+ I A+ + + L+ Y
Sbjct: 119 EDRSQLAGVFISEKRMSGDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGA 178
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
D + M + SE+ R + + R+ + + I +
Sbjct: 179 ADYRVIKYDTYGAMLPKPEISEEITDREAIPTSELI-------GNPAPRSVAELQWRISL 231
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
PL + +TL+A +S + + + I I+ ++S + G L
Sbjct: 232 PLSVFIVTLMAIPLS-RVNPRQGRYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGM 290
Query: 341 LIPVILTISLSILILL 356
+ I LSI +LL
Sbjct: 291 WW--VHGIYLSIGLLL 304
>gi|288925668|ref|ZP_06419600.1| putative permease [Prevotella buccae D17]
gi|288337606|gb|EFC75960.1| putative permease [Prevotella buccae D17]
Length = 638
Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/200 (13%), Positives = 64/200 (32%), Gaps = 10/200 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLG---AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L + K + + +++ F+ + G ++ VP
Sbjct: 7 LDIFIAKQFGLLFVGTFFICQFVLMMQFLWRYIDELIGKGLSMEVLAQFFWYMSLMLVP- 65
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
Q +P L+ +++ F NL +SEL +A GIS+ Q + ++++ + N
Sbjct: 66 ---QALPLAILLSSLITFGNLGESSELTAIKAAGISLMQTFRSLIFITVVVMGCSFYFQN 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I L+ K + + + + + + +K +
Sbjct: 123 NIGPQANMKITQLLISMKQKSPELEIPEGIFY---DGIPNCNLYVQKKNVKTGKLYGIMI 179
Query: 182 ITIDKKNKIIHRKDADLAII 201
+ + AD ++
Sbjct: 180 YRMTNSYEDAAIILADSGML 199
Score = 39.8 bits (92), Expect = 0.60, Method: Composition-based stats.
Identities = 10/90 (11%), Positives = 23/90 (25%), Gaps = 10/90 (11%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ E + + + I A + R + V + + Y +
Sbjct: 369 RQHEIEAINKFTLAFSCLIFFFIGAPLGA-IIRKGGLGVPVIVSVLVFIVYYILDNTGYR 427
Query: 328 FGKSGILLPVAAAL-----IPVILTISLSI 352
+ G+ A P +L +
Sbjct: 428 MARGGMW----AVWFGKGLAPAVLIPLAAF 453
>gi|42526553|ref|NP_971651.1| hypothetical protein TDE1043 [Treponema denticola ATCC 35405]
gi|41816746|gb|AAS11532.1| membrane protein, putative [Treponema denticola ATCC 35405]
gi|325473491|gb|EGC76686.1| membrane protein [Treponema denticola F0402]
Length = 377
Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/319 (10%), Positives = 96/319 (30%), Gaps = 25/319 (7%)
Query: 46 YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF 105
+L +P II P+ L+ ++ + E + A+GIS +L P
Sbjct: 51 APTKDVLLLLFYSLPFIIATTAPYAALIGTLMCLGRFSADHEFISMNALGISTSFILIPV 110
Query: 106 VVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ----------- 154
+ + + + + + + G +++ + + + +
Sbjct: 111 FALGVFVSVGSFITNDILIPRGTIKFNEVLYNIASSTPALELESYSVKRNENSIVVSGLI 170
Query: 155 -ISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVE 213
++ + I + + + + T + II + + + N + L +
Sbjct: 171 KDNSIHDLLIIDSSQRGAKRFLSSSQTDVKKSNDRSIIMQLEMLNPRLLN--LDLNNRSK 228
Query: 214 YQYGRIPIDKNSTTLNIPIKMDGFQKF-SEQFASRSFYEIIKKMSFSNKSNIFHNYRAET 272
+ L + ++ S + IK+ + ++
Sbjct: 229 FDV-VYGESITYNVLAKDVAPKFISSSGPDKMTSYDLIKDIKQKKEAGDTSPRLLNIYIM 287
Query: 273 QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP---RIIVAYGIFSGFMLYTIITIMKSF- 328
+ + +P L+A ++S R+ + G+ + + +
Sbjct: 288 ELHRKFSVPFGAFFFVLLAFAIS----RAGKTYDQSTGFIVGLLISVAYWAFLIGGQMLC 343
Query: 329 GKSGI-LLPVAAALIPVIL 346
+SG+ + P +L
Sbjct: 344 LESGLNINGALVMWFPNVL 362
>gi|8925955|gb|AAF81687.1|AF233069_10 unknown [Galdieria sulphuraria]
Length = 142
Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 57/142 (40%), Gaps = 3/142 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMIL-VFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M I+ RY + + + + + V L E+ ++ + + +
Sbjct: 1 MFTIIDRYILQLLIGPFVISSSAFTSITLSVGVLFELVRRV--VEGLPFKIAGKILLYKS 58
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P I P +L ++ F L EL+ R++GIS ++ L ++ L+ I + +
Sbjct: 59 PYFIFLSFPLASLFATLITFNQLANNKELIGFRSLGISNYKWLRSTIIFGTLIAISSFFI 118
Query: 120 INPIATSGEKIGIDLIQQWKDN 141
+ I +L+++ K+N
Sbjct: 119 NDLIVPVSNHRANELLRESKEN 140
>gi|149914658|ref|ZP_01903188.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Roseobacter sp.
AzwK-3b]
gi|149811451|gb|EDM71286.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Roseobacter sp.
AzwK-3b]
Length = 380
Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/373 (14%), Positives = 125/373 (33%), Gaps = 43/373 (11%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
++ +F L + + ++ + +++ A +P +I I+P
Sbjct: 1 MLSQFMVLFGFFALVLVSIFWINKAVRMFDRLIG-DGQPAWVFLEFTALTLPGVIGVILP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG- 127
+ V L+ SEL + +A G S W+L+ P +V IL+ + L+ + + S
Sbjct: 60 MAAFAATVYVTNRLSTESELTVVQATGYSPWRLMRPVIVFGILIALMMSLLTHFLIPSSL 119
Query: 128 -------EKIGIDLIQQWKDNGDKQ--KSDIIPWMQISNPQQ---DIFIGAKKILPENHI 175
+++ ++ + G+ I +++ P ++F+ ++
Sbjct: 120 SQLRLRQDEVSQNITAKLLTEGEFLHPAPGITFYIRDITPDGELHNVFMSDRRDSENTMT 179
Query: 176 WEDFTSITI-DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-PIDKNSTTLNIPIK 233
+ + I D + ++ + L + V R+ N + +I
Sbjct: 180 YTSNRAYLIQDPEGGTKL-------LMVDG---LAQTVRRDGNRLFTTHFNDFSYDISAL 229
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+ ++ +I + + + + PL+ + +I +
Sbjct: 230 IASEATSLDKVTFAHTLDIARDPRAVADRTLSTVSQVIFELNNRFSQPLLCIVAAVIGFA 289
Query: 294 VSL--EFSRSNQPRIIVAYGIFSGFMLYTIITIMKS------FGKSGILLPVAAALIPVI 345
L FSR R I F L +I +++S S + + +P
Sbjct: 290 SLLLGGFSRFGVWRQ-----ILLAFTLLIVIKLVESRVSGLVLAHSDLWPLMY---LPAA 341
Query: 346 LTISLSILILLQK 358
L + +LL
Sbjct: 342 LGALV-TAVLLHL 353
>gi|315606454|ref|ZP_07881469.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
gi|315251860|gb|EFU31834.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
Length = 638
Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/200 (13%), Positives = 64/200 (32%), Gaps = 10/200 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLG---AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L + K + + +++ F+ + G ++ VP
Sbjct: 7 LDIFIAKQFGLLFVGTFFICQFVLMMQFLWRYIDELIGKGLSMEVLAQFFWYMSLMLVP- 65
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
Q +P L+ +++ F NL +SEL +A GIS+ Q + ++++ + N
Sbjct: 66 ---QALPLAILLSSLITFGNLGESSELTAIKAAGISLMQTFRSLIFITVVVMGCSFYFQN 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I L+ K + + + + + + +K +
Sbjct: 123 NIGPQANMKITQLLISMKQKSPELEIPEGIFY---DGIPNCNLYVQKKNVKTGKLYGIMI 179
Query: 182 ITIDKKNKIIHRKDADLAII 201
+ + AD ++
Sbjct: 180 YRMTNSYEDAAIILADSGML 199
Score = 39.8 bits (92), Expect = 0.62, Method: Composition-based stats.
Identities = 10/90 (11%), Positives = 23/90 (25%), Gaps = 10/90 (11%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ E + + + I A + R + V + + Y +
Sbjct: 369 RQHEIEAINKFTLAFSCLIFFFIGAPLGA-IIRKGGLGVPVIVSVLVFIVYYILDNTGYR 427
Query: 328 FGKSGILLPVAAAL-----IPVILTISLSI 352
+ G+ A P +L +
Sbjct: 428 MARGGMW----AVWFGKGLAPAVLIPLAAF 453
>gi|254713812|ref|ZP_05175623.1| hypothetical protein BcetM6_10745 [Brucella ceti M644/93/1]
gi|254717130|ref|ZP_05178941.1| hypothetical protein BcetM_12054 [Brucella ceti M13/05/1]
gi|261218945|ref|ZP_05933226.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
gi|261321556|ref|ZP_05960753.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
gi|260924034|gb|EEX90602.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
gi|261294246|gb|EEX97742.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
Length = 402
Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 51/361 (14%), Positives = 116/361 (32%), Gaps = 23/361 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L A+ + + + + + N + + ++ +P I ++
Sbjct: 7 YILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTT-SGQTFQTIVQFSSLLIPSAIPLVM 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF ++ +N+ SELV+ A G + P ++ + + + + L+ N +
Sbjct: 66 PFALIIAITQTLSTMNQDSELVVINASGAPRSAAMRPILILAATVSVTSFLIANYVEPYA 125
Query: 128 --------EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
DL+ G +K ++Q++ + D IG I D
Sbjct: 126 RINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRDPTLD- 184
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGF 237
I I D+ ++ N +V+ + V + I D + LN D
Sbjct: 185 -LIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGDDFV 243
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHN---YRAETQFYFLIVIPLMLVAMTLIAASV 294
++ + + + R Y LI ++A+ + S
Sbjct: 244 IFAKDRPLTYLLNPDSNDPMLQTRPLTYKAELHRRFTQWIYPLI---FAMIALAIAGDSR 300
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
S +R + ++ + Y + L+P+++ + ++
Sbjct: 301 SHREARVSASFSAISTALLV----YWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356
Query: 355 L 355
L
Sbjct: 357 L 357
>gi|319789793|ref|YP_004151426.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
gi|317114295|gb|ADU96785.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
Length = 359
Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 52/138 (37%), Gaps = 1/138 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L RY + + V ++D + S + A +P
Sbjct: 2 KVLHRYIAFEITR-VAALSSALFLFVILMDRASTIAETVLGKGVSFLDFLSVLAKGLPAF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +IP ++ ++VF +N +EL +++ GIS+ +L P + ++ + + +
Sbjct: 61 LGIVIPMSFVLSVVIVFIGMNSNNELTAAKSCGISLKELSKPVFLLGLIFSLLSFYSLMF 120
Query: 123 IATSGEKIGIDLIQQWKD 140
+A +++
Sbjct: 121 LAPKSNVAMKRELEELLR 138
>gi|119476403|ref|ZP_01616754.1| predicted Permease [marine gamma proteobacterium HTCC2143]
gi|119450267|gb|EAW31502.1| predicted Permease [marine gamma proteobacterium HTCC2143]
Length = 374
Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/358 (12%), Positives = 122/358 (34%), Gaps = 11/358 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL+RY K L + +++V + Q S + R+P +
Sbjct: 2 ILFRYLAKEILISLFAVSATLLVIVMSGRFVKYLAQAAA-GKLSPDILLNIMVYRLPSFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ ++P + ++ + + SE+ + A G+S +L +V SI + + +
Sbjct: 61 ELVLPLSLFIAILLAYGRMYVESEMTVMAACGLSDRRLAVYTLVPSICVAVVVGYLSLYA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ G ++ + +++ + + + Q + + + I +D S
Sbjct: 121 SPIGIGKVQEIFEDTQNSSGLELLIEGRFR--VDEQSGRVTYVESLDNDVGIMQDVFSAE 178
Query: 184 I---DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + + A+ I + + + + G + + + D + +
Sbjct: 179 QSLGSEGEEQLTVIFAEQGNIQMSDDQQSRYLVLRNGYQSVGQPGGLRYRISQFDEYGQL 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAE--TQFYFLIVIPLMLVAMTLIAASVSLEF 298
A + + K+ + ++ E + + + +++ + LIA ++S
Sbjct: 239 VRDPAVQK--TLYKRADARTTEQLLNSTLLEDKATLQWRMSLVILVPVIALIAQALSRTS 296
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + ++ I L + + GK + ++ + L I +L
Sbjct: 297 HRRGRYVKMLPAFIIYITYLVALNAARDAIGK-EKISSDLGMWWVHLVFLGLGITLLF 353
>gi|260771005|ref|ZP_05879934.1| predicted permease [Vibrio furnissii CIP 102972]
gi|260614242|gb|EEX39432.1| predicted permease [Vibrio furnissii CIP 102972]
Length = 347
Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/338 (10%), Positives = 107/338 (31%), Gaps = 20/338 (5%)
Query: 23 GAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNL 82
++ + + + +P + ++P + ++ F L
Sbjct: 1 MLFLVFLSQKFIRVLADASD-GEIPARLILSIVGLNMPAMGLLMLPLSLYIGILLTFGRL 59
Query: 83 NRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNG 142
SE+ + A GI L+ + ++ ++ + +++Q
Sbjct: 60 YAESEITVMNATGIGNKFLIRAALYLGVITSCLAGFNALWLSPWSQDKVQSVMEQLAAEN 119
Query: 143 DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRK---DA-DL 198
+ +P + I EN + + + I+ DA D+
Sbjct: 120 SVDLLQKGQF--QRSPDGSSVVFIDNI--ENKKLSNVFVAQLTPRESILPSVMFSDAGDV 175
Query: 199 AIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKM 256
+ + + + + Y+ +D T + + G + E+ ++ +
Sbjct: 176 KELSDGRQVITMYNGTRYEGVPTRVDYMVTKFDEYEGLIGQRAVKEKGRDWEAIPTLELI 235
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
+++S + + + I + + + +T++ +S R + + I
Sbjct: 236 KNADRSA-------QAELQWRISLVVCIPLLTMLVVPLSAVNPRQGRFAKM-GPAILIYL 287
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ I+ KS + G + + P+ + +S +I
Sbjct: 288 TYFLAISATKSALEDGSIPAIVGMW-PINAALLISAII 324
>gi|221639315|ref|YP_002525577.1| permease Yjgp/YjgQ family protein [Rhodobacter sphaeroides KD131]
gi|221160096|gb|ACM01076.1| Permease YjgP/YjgQ family protein [Rhodobacter sphaeroides KD131]
Length = 364
Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 51/361 (14%), Positives = 125/361 (34%), Gaps = 40/361 (11%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRG------AVLAATRVPLIIQQIIPFITL 72
L G LV V L N+ L + IS G + +P +I+ ++P
Sbjct: 1 MALFGFFSLVLV--LVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNVIRLVLPLSAF 58
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
I V L++ SELV+ +A G S ++L P + +++ + ++++N + +
Sbjct: 59 AATIYVVNRLSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNLLVPASRATLS 118
Query: 133 DLIQQWKDNGDKQ----------KSDIIPWMQISNPQQ---DIFIGAKKILPENHIWEDF 179
+ N + + +++ D+ + + + +
Sbjct: 119 ARSAEISQNATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRDPARSTAYTAR 178
Query: 180 TSITIDKKNKIIHR-KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
++ + D + + +L+ ++ + D + K +
Sbjct: 179 RALLVRTDTTPKLLMIDGSAQTLTREGRRLE---LTRFDDVTYDLGAFMTGSGPKRRVLE 235
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-ASVSLE 297
+ +++++ + + ++ + I P + A +LI A++ L
Sbjct: 236 ELPTMTLLAPTADVLEETRSTRAAALYEG-------HSRIGQPFLGFASSLIGFAALLLG 288
Query: 298 -FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG--ILLPVAAALIPVILTISLSILI 354
FSR + + + ++ TI G + + AA + ++ IL+
Sbjct: 289 SFSRFG-LWWQILFAVLLLIVVQTINVAASGVGVTDEQLWPLAYAA---PVTGFAIGILL 344
Query: 355 L 355
L
Sbjct: 345 L 345
>gi|183600430|ref|ZP_02961923.1| hypothetical protein PROSTU_04001 [Providencia stuartii ATCC 25827]
gi|188020226|gb|EDU58266.1| hypothetical protein PROSTU_04001 [Providencia stuartii ATCC 25827]
Length = 365
Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 54/369 (14%), Positives = 123/369 (33%), Gaps = 43/369 (11%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATRVPL 61
I+ RY + LK+ L L M++ F +I G +P+ + L +
Sbjct: 2 IIIRYLVRETLKSQLAILFVLMLIFFSQKSIDILGAAVQGNIPSDLVLPLLGLGVPEMAQ 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I + + ++ + L SE+ + A G+ L+ +V + L + + I
Sbjct: 62 LILPLS---LFLGLLMTYSKLYTESEITVMHACGLGKSVLVKAALVLATLTALVAIGNIA 118
Query: 122 PIATSGEKIGIDLIQQWKDNGD---------KQKSDIIPWMQISNPQQDIF-------IG 165
+ + ++ K N K D + I + + + F +
Sbjct: 119 WMLPWSSQYQEQVLADAKANPGLAAMVEGQFKTTKDRNIVLYIGDVKGNDFKNVFLAQLR 178
Query: 166 AKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNS 225
A + + D + D + I D Y L+ + +
Sbjct: 179 ATNEQRPSVVVADSGYMREDADGRQIVVLD--EGTRYEGTALLRDFRITDFKNYQAVIDH 236
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
D EQ + K+N F + +F++ + I +V
Sbjct: 237 KP------SDARNDRVEQKNMLQLW----------KANDFDSN---AEFHWRLTIVFSVV 277
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
M L+ +S R + + + + + + + + +++ + G + P A +
Sbjct: 278 VMALMVVPLSEVNPRQGRV-LSMLPAMLLYLIFFLLQSTLRNSAEKGDVDPKYAMWAVNL 336
Query: 346 LTISLSILI 354
++L+I++
Sbjct: 337 GYLALAIIL 345
>gi|238750167|ref|ZP_04611670.1| Inner membrane protein yjgP [Yersinia rohdei ATCC 43380]
gi|238711711|gb|EEQ03926.1| Inner membrane protein yjgP [Yersinia rohdei ATCC 43380]
Length = 364
Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/373 (14%), Positives = 123/373 (32%), Gaps = 39/373 (10%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ ++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIIAALILAVATSALAAVNTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGD---------KQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
K +++ + N K +D + I N F +
Sbjct: 121 GPWSSKHQDEVLNDARANPSLAALAGGQFKSSNDGSSALFIGNVSGKEFNRVFLAQLRPN 180
Query: 175 IWEDFTSITIDKKNKIIHRKDAD------LAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ + I D + R D Y L+ + +
Sbjct: 181 GNQRPSVIVADS-GHMTERPDGSQVVTLNKGTRYEGTALLRDFRITDFVDYQAIIGHKEV 239
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ +EQ + + +SN +F++ + + + +V M
Sbjct: 240 QQNNTV------AEQMNMKQLW----------RSNEPDA---RAEFHWRLTLIVSVVIMA 280
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+ +S+ R + + + + + + + + ++S SG L P+ + + +
Sbjct: 281 LLVVPLSVINPRQGRV-LSMLPAMLLYLIFFLLQSSLRSNASSGKLDPLV--WMWTVNGV 337
Query: 349 SLSILILLQKEDG 361
L++ ++L DG
Sbjct: 338 YLALAVILNLWDG 350
>gi|218296305|ref|ZP_03497061.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
gi|218243377|gb|EED09907.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
Length = 347
Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/347 (12%), Positives = 110/347 (31%), Gaps = 22/347 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
L RY + L L L ++L + E+ + + R P
Sbjct: 2 KTLDRYLLREALSLFLGGLAAIVLLFLAGAVYEVLAPLVAK-GADPYTLLLYLLYRAPEA 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + P L +++ + SEL A+G++ ++L PF++ ++L+ + L+
Sbjct: 61 LVRGAPVAYLFTLLLLLSRMAEDSELKALLALGVARERVLLPFLLLALLIALAVFLLGES 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ G DL++ + ++ ++ + P + + + + +
Sbjct: 121 LVPKALAAGQDLLR--RQVLERPRALLTPGTTFQDARGRVVYVGEVAGDRIGKLRVLSQ- 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTT----LNIPIKMDGF 237
A+ + +++ G P L + + +
Sbjct: 178 --------EEVLLAERGRFQEGVLLVEEGQRVTYEGDRPRTLTRFQKGEILLKDLTFEPW 229
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q + + + ++++ + P V L A ++
Sbjct: 230 QNPANRMTLGELKKEVERLRALGVKAGLEATTY----HRRYAEPASAVVFALFAVGLAFY 285
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
++ V I + F Y ++ + G+ L P+ AA P
Sbjct: 286 LLGGSRSLGWVGVAILT-FFYYATWSVGRIMGEQNALDPLLAAWGPN 331
>gi|254374090|ref|ZP_04989572.1| permease YjgP/YjgQ family protein [Francisella novicida GA99-3548]
gi|151571810|gb|EDN37464.1| permease YjgP/YjgQ family protein [Francisella novicida GA99-3548]
Length = 360
Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 56/365 (15%), Positives = 120/365 (32%), Gaps = 36/365 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + + I +P +
Sbjct: 2 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYS-QGLGIDSIVKFVILTIPENV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL----LNPFVVGSILLGIFTVLV 119
+ P + ++ F +E+ ++ A GI+ Q+ L P V +I + + TV+
Sbjct: 61 SLVAPIAIFLAIVICFGKYFANNEMFVTLAGGITWMQIVKNTLKPVVALTI-ITLITVMY 119
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWED 178
+NP++ I + + S I I P I IG K + D
Sbjct: 120 LNPLSKQTLDIY-----KASLSAKALLSSITDQKIIKAPDGKIIYIGNKS----GNTLSD 170
Query: 179 FTSITIDKKNKIIHRKDADLAIIYND----KVKLKKVVEYQYGRIPIDKNS-------TT 227
++ A A I +D + V Y + + T
Sbjct: 171 VFLYQNTPQDGEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYT 230
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ D ++ + E +F++K+N + +F+ I + ++
Sbjct: 231 IFDNSDRDYNHDRVDRLYMHTLIE-----NFNDKANG---TAYKAEFFGRINNAISVIVS 282
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
+L+A ++ R N+ + + + + + +G + +P I
Sbjct: 283 SLLALALCRLRPRQNKYAK-LLPSVVVLAIYLCTNMFINTLMANGSVPVWIGFWLPHIFF 341
Query: 348 ISLSI 352
++
Sbjct: 342 TIFAV 346
>gi|218296646|ref|ZP_03497364.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
gi|218242959|gb|EED09492.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
Length = 368
Score = 71.8 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 51/377 (13%), Positives = 117/377 (31%), Gaps = 36/377 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L+R+ K L LL +F+ + L I + + VP ++
Sbjct: 2 TLYRHLLKESLPVLFLTLLFLTA-IFLFGFFYAGARW--LEGVPIPKILRWLSYHVPGVL 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q P + ++VF L + G+ +W+ P + LL + + + +
Sbjct: 59 VQAFPIALVTTTVLVFGRLAAEGAQFALLSGGVPLWRAALPLLWLGALLSVAALYLQEYV 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWM-QISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ W D Q + + Q + + E +
Sbjct: 119 VPEANNR---VRVAWWDEIHTQGAGLFRLKGMQIPIGQGRSLYFEDFDMERKEMVGVRIV 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID-------------------K 223
+ + ++ A+ + + L+ Y+ +
Sbjct: 176 SF--QGEVGTFLFAERGTWDDRLITLRGYRFYRVDFREVPGLEGARDLLAQVRRVFRAVS 233
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSF-----YEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
L + + + ++ + SF + +K + RA +F+ +
Sbjct: 234 RGEVLEVESDLSRARAIADYADTFSFGQNSLSQAWRK-ARDPFLPPLERDRARLEFHSKL 292
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+PL + + L+AA+++L + RS + + + Y + ++ G + P
Sbjct: 293 ALPLANLVLVLLAAAMALRYGRS--TGLALGLSVVLALGYYGAFFLGRALAGVGAIPPEL 350
Query: 339 AALIPVILTISLSILIL 355
A +L L + L
Sbjct: 351 GAWGANLLFFLLGVRAL 367
>gi|163868028|ref|YP_001609232.1| hypothetical protein Btr_0827 [Bartonella tribocorum CIP 105476]
gi|161017679|emb|CAK01237.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
Length = 396
Score = 71.8 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/367 (13%), Positives = 122/367 (33%), Gaps = 27/367 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ Y K L+ A+ + + + + N + ++ + + VP +I
Sbjct: 3 IIEFYILKRVFFLFSSVLIAAVGVSWTVQILARINFLTT-SKQTLLTVLQFSLSLVPSVI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IPF ++ +N+ SEL + A G + P ++ +I+ + + N +
Sbjct: 62 FLVIPFALVIAVTTTLSAMNQESELAVINASGFPKSTVWKPVLLLAIVASCISFSIANFV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ + + +++N +++I + P + F +
Sbjct: 122 VPQARLHMRQMLASAHFDLINLFISEGSFQKLAN---NLYIEIGERNPNGTLERLFIADQ 178
Query: 184 IDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
D K + + A A I + L + + + +
Sbjct: 179 RDPKTDLFY--YATKASIVSNKNGRFLILNNGEIERVNHENNSVSIVQFSAYTF--SLGE 234
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNY------RAETQFYFLIVIPLMLVAMTLIAAS 293
F + + Y + +S+ + Y + + +F+ + L + +LIA +
Sbjct: 235 FIPSDKTPTLYPKDRSLSYLQNPDPKDPYYQRKPLQYKAEFHRRLTQWLYPIVFSLIALA 294
Query: 294 V-----SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
S +R I F++Y I K+ + + P+ ++
Sbjct: 295 AAGNVGSHRQAR----YCANFSAIALSFLVYWIGYFFAEKAKNDLAYVPLLYITPIGTSL 350
Query: 349 SLSILIL 355
+ ++L
Sbjct: 351 FVFFMLL 357
>gi|257095656|ref|YP_003169297.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257048180|gb|ACV37368.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 359
Score = 71.8 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/331 (9%), Positives = 100/331 (30%), Gaps = 25/331 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + + ++ L + N+ + + A+L + +
Sbjct: 2 IFQRAVRREFAHAASGIFTALFAIMVTTQLIRLLNEAAQGGVAPDAVAALLGFASL-NYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V ++ R SE+V+ + G+ + + P +V +I L + +
Sbjct: 61 PPLLSLSMFVAILLTLSRCYRDSEMVVWFSSGLPLTAWIRPVLVFAIPLVATIAALSFFL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + D + + + D + + I + + ++
Sbjct: 121 SPWAVSQSAEYRGKLSIRKDAGEVSPGTFH--ESSAGDRVVFVEGIAEDTSQVRNV-FVS 177
Query: 184 IDKKNKI--IHRKDA--DLAIIYNDKVKLKKVVEYQYGRIPIDK---NSTTLNIPIKMDG 236
K+ ++ ++A + + L+ Y+ + + ++
Sbjct: 178 ETKEGRVGVTMAVTGHQEIAANGDRFIVLQDGRRYELAPASPEVRILEYVRYAVRLETKE 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S E++ + + + IP V M L+A +S
Sbjct: 238 ARGITPTPKSMPLRELL----------PVDLPAYRAELLWRLSIPCSAVVMALLAIPLSF 287
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R+ + ++ + + ++
Sbjct: 288 VNPRAGRSANMLL----AILVYLIYNNLLTI 314
>gi|116251335|ref|YP_767173.1| hypothetical protein RL1569 [Rhizobium leguminosarum bv. viciae
3841]
gi|115255983|emb|CAK07064.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 393
Score = 71.8 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/370 (14%), Positives = 137/370 (37%), Gaps = 28/370 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L Y + + L LL + +++ + + N + + SI A LA +P I
Sbjct: 2 KLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPSI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I ++PF ++ +N SEL + A G L+ P ++ + ++ +F+ V N
Sbjct: 61 IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAVISVFSFFVDNV 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + +I + S +I + +++ + + + F +
Sbjct: 121 VEPRAKTVVRQMIAE---TYADLLSSVIEEKTFRKLDEGLYVQISQRMAGRMLKGLFVAD 177
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKL-----KKVVEYQYGRIPI-DKNSTTLNIPIKMDG 236
D ++I+ A + + L + + G + + + +S + ++ +
Sbjct: 178 ERDPAYELIY--YAKEGAVDDTGTTLIMHQGEVHRKTPDGNVSVINFDSYSFDLSDMTES 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + + R + + ++K + + + ++ V L + +++
Sbjct: 236 RGQATLRASDRDLWFLFN-PDPADKDYTIRPQSYRAELHRRLTDWILPVVFALFSLAIA- 293
Query: 297 EFSRSNQPRII--VAYGIFSGF-----MLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+RS++ + + + F Y I + + A I++
Sbjct: 294 GDARSHREARLHPMVSALAYAFAMRWAAFYAANQIDTD---PEYIAVLYAI---PIVSSI 347
Query: 350 LSILIL-LQK 358
+SI+ L L K
Sbjct: 348 VSIVFLGLHK 357
>gi|326561252|gb|EGE11611.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
catarrhalis 46P47B1]
Length = 120
Score = 71.8 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y + L ++G ++ V + + E Y+++ + R P +
Sbjct: 5 ILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNISE--TYTLTDALLFILYRSPYFL 62
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
Q IP TL+ ++ L SEL++ RA G+SI+++++ ++ +++ ++ V
Sbjct: 63 VQFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGV 118
>gi|320537762|ref|ZP_08037685.1| hypothetical protein HMPREF9554_02439 [Treponema phagedenis F0421]
gi|320145385|gb|EFW37078.1| hypothetical protein HMPREF9554_02439 [Treponema phagedenis F0421]
Length = 377
Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 58/360 (16%), Positives = 114/360 (31%), Gaps = 29/360 (8%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL+ Y K L L + FV ++ + + + +L +P+I
Sbjct: 12 KILFLYLSKELLLYFFVCFLFFFFIFFVNNILLMAEDILSK-HAPFKDVMLLMFYSLPMI 70
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I PF LV ++ E + A+G+S+ LL P + + + I + +
Sbjct: 71 IANSAPFAALVGTLMCIGRFFSDLEFLAMNALGVSMKFLLVPVLAVGLFISIVSFFTNDV 130
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + I L + + D + + I Q + I ++ + I E +
Sbjct: 131 LLPASF---IQLRKVYWDISTSTPALELESYSIKKNQNAVVI--SGLIKDGIIDE---LL 182
Query: 183 TIDKKNKIIHRK----------DADLAII------YNDKVKLKKVVEYQYGRIPIDK-NS 225
IDK R D A+I + + E +Y I K
Sbjct: 183 IIDKGENKESRILGGKKSELKKSTDPAVIMTLDMNEPQMLIIDGKDEKKYDSIVGKKIAY 242
Query: 226 TTLNIPIKMDGFQKF-SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLML 284
L I F S Y+ I+ +N+ N +F+ IP
Sbjct: 243 NVLAKNINPVYFNALGPSDMTSYDLYKDIQTRKKNNEDKRLLNI-YNMEFHKKFSIPFGA 301
Query: 285 VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPV 344
+ +A +S + + + G+ + ++ + + + +P
Sbjct: 302 LFFVFLAFGIS-SVGKVHNQSVGFILGLLIAVAYWAVLMGGQEISLTFDVSGAFMMWLPN 360
>gi|297519577|ref|ZP_06937963.1| hypothetical protein EcolOP_18177 [Escherichia coli OP50]
Length = 115
Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
G+L RY K T + L + L +I + + G+ +Y + VP
Sbjct: 4 FGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ-GSYDALGAGMYTLLSVPK 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI 114
+Q P L+ ++ L + SELV+ +A G + Q+ + +I L +
Sbjct: 63 DVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVL 115
>gi|297182283|gb|ADI18452.1| predicted permeases [uncultured Oceanospirillales bacterium
HF4000_13G19]
Length = 354
Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/278 (12%), Positives = 96/278 (34%), Gaps = 18/278 (6%)
Query: 51 GAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI 110
++ A R+P +Q I+P + ++V ++ +E+V+ RA G +++ +V ++
Sbjct: 36 LFLVMAFRLPEFLQMILPLSLYIAILLVLGRMHMDNEMVVLRAGGQGDGRVVRSLIVPAL 95
Query: 111 LLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL 170
+ L + G+ + ++ K + + + A+ +
Sbjct: 96 VAMSVIALFALYVTPQGDAEVNRIFEEQKGRSVLELLTPGRFHVKGDDDNQRATYAESLN 155
Query: 171 PENHIWEDFTS----ITIDKKNKIIHRKDADLAIIYND----KVKLKKVVEYQYGRIPID 222
E + E+ + ++ +++ A + ++L +YQ D
Sbjct: 156 REEGVLENVFVADASFSSEEAGRLLT-VWARSGNLVQQDGISYLELTDGYQYQGKPGEAD 214
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
G ++ S + + + + ++ ++ +P+
Sbjct: 215 YREVAFEKARVRIGSERSSSRPPEVRGRSTLDLIDDGGNQAMAELAW---RWSLVLTVPI 271
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
M +A A +S R + ++ G+MLY
Sbjct: 272 MCLA----AVPLSRVNPRQGRFLRMIPA--VLGYMLYV 303
>gi|296120596|ref|YP_003628374.1| permease YjgP/YjgQ family protein [Planctomyces limnophilus DSM
3776]
gi|296012936|gb|ADG66175.1| permease YjgP/YjgQ family protein [Planctomyces limnophilus DSM
3776]
Length = 373
Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 59/375 (15%), Positives = 123/375 (32%), Gaps = 40/375 (10%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+Y K + + A LV IDL E ++ + N L + Q
Sbjct: 5 DQYLLKNFFYVFFVCFVAAFGLVVTIDLLENLDEF--MLNNQSGGALSLLVSIGTYYGYQ 62
Query: 66 IIPFI-------TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
I F+ ++ +VV R+ EL A G+ ++++L ++G +L+ V
Sbjct: 63 AIFFLDRGGASLMVIAVMVVLVLFQRSGELHPMLAAGVPMYRVLRALMIGPVLVTAVLVA 122
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDI------FIGAKKILPE 172
+ G + + +IS + + GA+ +LP
Sbjct: 123 NQELVVPVIAHAAHGGRGIQTGEGGQVEPIYDYSTKISINGEKVSLADSQLEGAQFVLPA 182
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI----------- 221
I D T I + A D + Q+ + +
Sbjct: 183 PLIVHDLTII------RGTTAIFRKAAGQRPDGWVIFGAAP-QFEELALTPRGQEIVRKV 235
Query: 222 -DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+ P+ D K S E++ ++ + + TQ + +
Sbjct: 236 GRSGELFIASPVSCDQLFKRKSSSNYLSTSELLGRIR-NEAYGPLAVQKFVTQVHGRLTQ 294
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF--MLYTIITIMKSFGKSGILLPVA 338
PL+ + L++ + R +++ G+ + +L+ ++ + SGI+
Sbjct: 295 PLINLIAVLLSLPL---LVRRESAGLVMDSGVCAVAQGILFGMMQLSAYLSTSGIIAADL 351
Query: 339 AALIPVILTISLSIL 353
AA PV + +++
Sbjct: 352 AAWFPVFIGGAMAAW 366
>gi|240850232|ref|YP_002971625.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
gi|240267355|gb|ACS50943.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
Length = 396
Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/362 (13%), Positives = 126/362 (34%), Gaps = 27/362 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ Y K L ++ A+ + + + + N + ++ + + VP ++
Sbjct: 3 IIEFYILKRVLVLFSSVMIAAVGVSWTVQILARINFLTT-SKQTLLTVLQFSLSLVPSVV 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+IPF ++ + +++ SEL + A G + P ++ +I+ + + N +
Sbjct: 62 FLVIPFALVIAITTILSAMHQDSELAVINASGFPKSTVWKPILLLAIVASCISFSIANFV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++ + + + +++N +++I + P + F +
Sbjct: 122 VPQARLHMRQMLASAHFDLINLFINEGSFQKLAN---NLYIEIGERNPNGTLERLFIADQ 178
Query: 184 IDKK-NKIIHRKDADLAIIYND-KVKLKKVVEYQYGRIP-----IDKNSTTLNIPIKMDG 236
D K + + DA + N + L + + +S T ++ +
Sbjct: 179 RDPKTDLFYYATDASIVSNKNGSFLVLNNGEIERVNHQNNSVSIVQFSSYTFSLGEFIPS 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV-- 294
+ + RS ++ + + + +F+ + L + +LIA +
Sbjct: 239 DKAPTLYPKDRSL-SYLQNPDPKDPYYQRKPLQYKAEFHRRLTQWLYPIVFSLIALAAAG 297
Query: 295 ---SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
S +R + I F++Y I K+ + A IP++ + +
Sbjct: 298 DVCSHRQARHSANF----SAIALSFLVYWIGYFFAEKAKNDL------AYIPLLYIMPIG 347
Query: 352 IL 353
Sbjct: 348 TS 349
>gi|152990135|ref|YP_001355857.1| hypothetical protein NIS_0386 [Nitratiruptor sp. SB155-2]
gi|151421996|dbj|BAF69500.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
Length = 343
Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/354 (14%), Positives = 121/354 (34%), Gaps = 20/354 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
++RY YLK L L+ + +D ++ + S + + + I
Sbjct: 2 VYRYLAINYLKYFLLLLISLTLFFVSLDYFQVFKSLP----ASANLQILYLYYKSLNAID 57
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ P + I + L R++ELV A+G S ++ P L + ++ +
Sbjct: 58 LLFPITLIFALIALKNRLIRSNELVAIYALGYSKRGVVMPV----FLTSLLLTILYLFLH 113
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + K + + + +N ++ +K+ P N + +
Sbjct: 114 LTSFAYADEYANNIKKYQSLSSATKDLFFKYNND----YVFFEKLYPLNKRAQGIKVYEL 169
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI--PIKMDGFQKFSE 242
+ + K+ A A L + + + L+I K E
Sbjct: 170 ENQ-KLQKIIFAQSATFQKRSWHLSDATIVEVSDGKLIERKADLSILQNYKPKILDSVYE 228
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA--ASVSLEFSR 300
+S + + ++ + + ++ + FY L+ M +I V+ +
Sbjct: 229 GKSSITLIDALEAIKLLKQQSLNVDRIKAIIFYQLLFPFFAPFLMIIIYYFVPVTARITN 288
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
N + + S + + T++K +G L A + P+ L + +++ +
Sbjct: 289 LN--LFLFGATVTSLIVWGFLFTLVK-LAFNGSLDAWYAIVFPISLLLVIALYL 339
>gi|300772186|ref|ZP_07082056.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33861]
gi|300760489|gb|EFK57315.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33861]
Length = 494
Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 64/174 (36%), Gaps = 8/174 (4%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
F K ++ T + ++L ++++ + + L + + +Q +P
Sbjct: 12 FIKPFIVTFCIVMFVLLMLFLFKYIDDLIGK-----GFEWYVILQLIGYQCAVQMQMALP 66
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L+ +I+ F NL + ELV +A G+S+ + + P + L + L + I
Sbjct: 67 LSMLLSSIMTFGNLGESYELVAIKAAGVSLRKAMTPLFILVALFSAGSFLFSDYILPVVN 126
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
L+ ++ K I P + + I AK + + +
Sbjct: 127 LKMGSLLYDVRN--KKADFLIKPGIFNNTIPGYA-IRAKSKSKDGTVLNELMIY 177
Score = 46.0 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
K+ + R +F+ + + + + I A + R + V I + +
Sbjct: 358 KAFRDKDIRYRLEFHRKFTLAVSCLLLFGIGAPLGA-IIRKGGLGLPVVMAIIFFLIYHI 416
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I T+ + K L P+ + +I+ L+I +
Sbjct: 417 ISTVSEKAAKDASLAPMTGMWMAIIVLTPLAIFL 450
>gi|153951328|ref|YP_001398257.1| hypothetical protein JJD26997_1188 [Campylobacter jejuni subsp.
doylei 269.97]
gi|152938774|gb|ABS43515.1| putative membrane protein [Campylobacter jejuni subsp. doylei
269.97]
Length = 341
Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 54/343 (15%), Positives = 119/343 (34%), Gaps = 41/343 (11%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY +L T L +V ++ ++ ++ S L +P I+
Sbjct: 6 RYVLNQFLSTNLSIFFVLFAIVSMVFFIQLA-KLTSSIEISFLDLLKLYGFMLPRILIFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + + F L++ +E ++ +G S L F+ + L+ F ++V +
Sbjct: 65 LPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALVMTPI 124
Query: 127 GEKIGIDLIQQWKDNGDKQ------KSDIIPWM----QISNPQQDIFIGAKKILPENHIW 176
++ + + + WM + + + + I + H
Sbjct: 125 VFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSDKHENII----MYRPKHKA 180
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
D + I K+ + + D+ + K+ ++ G+ TL + + +
Sbjct: 181 GDKEQLIIAKEAHVQRKDDSFAFSLNQG-----KMYNFEQGQSIFSGEFDTLVVNTQFN- 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
++ ++ FYE ++ + + +F I I L +A TL A L
Sbjct: 235 ----TDNLQTKKFYEYWNDLNENPQRAR--------EFVIYITIALFPLASTLFALCFGL 282
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
R + V G+F +Y ++ SF + P+ A
Sbjct: 283 VTYRYEKGY--VYLGMFGVIAIYF--GLLSSFSQ----PPILA 317
>gi|34763638|ref|ZP_00144567.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27886691|gb|EAA23835.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 176
Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 59/164 (35%), Gaps = 1/164 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M + Y KY++K L ++G M + + +I + + + +P
Sbjct: 1 MIKKMDIYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQ-GKLAGGEIFDYIINLLP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P L+ ++ + E+V + GI +++ ++ + ++ + +
Sbjct: 60 KMFVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFIN 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
N I T + D K + I+N +++
Sbjct: 120 NSIYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLYL 163
>gi|218459006|ref|ZP_03499097.1| putative permease protein [Rhizobium etli Kim 5]
Length = 250
Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L Y + + L LL + +++ + + N + + SI A LA +P I
Sbjct: 12 KLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPSI 70
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I ++PF ++ +N SEL + A G L+ P ++ + ++ +F+ V N
Sbjct: 71 IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSILIRPILLLAAVISVFSFFVDNI 130
Query: 123 IATSGEKIGIDLIQQ 137
+ + + +I +
Sbjct: 131 VEPRAKTVARQMIAE 145
>gi|126725340|ref|ZP_01741182.1| Predicted permease [Rhodobacterales bacterium HTCC2150]
gi|126704544|gb|EBA03635.1| Predicted permease [Rhodobacterales bacterium HTCC2150]
Length = 367
Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 49/359 (13%), Positives = 129/359 (35%), Gaps = 29/359 (8%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
L T F ++ V+ ++ + + ++ A +P +I ++P V
Sbjct: 5 LTVTFGFFAFILVAVYWVNRAIVLFEDLISDGHTALVFLEFTALALPNVILLVLPVAGFV 64
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
+I V L SE+V+ ++ G S +L+ P ++ + + + ++ + + +
Sbjct: 65 ASIYVANRLISESEMVVMQSAGHSAKRLMVPALIFGVGIFVMMSILSHILVPISRTALAE 124
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
+ + Q + + +P D+ I ++ E D +T D+ I
Sbjct: 125 REGELSQDVTTQFLNAG---RFVHPSNDLTIYVREFS-ETGELRDI-LLTDDRSANIQTI 179
Query: 194 KDADLAII----YNDKVKLKKVVEYQYGRIP-----IDKNSTTLNIPIKMDGFQKFSEQF 244
A+ A + ++ + R + T ++ + ++
Sbjct: 180 YTANRAFLIKTETGPRLVMLSGQTQTLNRTTDRLSFVTFTELTYDLSALIPSSKERVLNM 239
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL--EFSRSN 302
+++ + Q + PL+ + + L+ +V L F+R
Sbjct: 240 RELFTPALLRGDQADLDRTNSTTAIFKAQAHGRFSKPLLGMILPLLGVAVMLVGGFNRMG 299
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL-----PVAAALIPVILTISLSILILL 356
R I+A + ++ ++ + G++ + P+ +P++ ++L + +LL
Sbjct: 300 VSRQILASAVII-----ILVQMLFNAGENAAISNPTMWPMI--YLPIVFAVAL-LWMLL 350
>gi|227536228|ref|ZP_03966277.1| YjgP/YjgQ family permease [Sphingobacterium spiritivorum ATCC
33300]
gi|227243835|gb|EEI93850.1| YjgP/YjgQ family permease [Sphingobacterium spiritivorum ATCC
33300]
Length = 494
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 64/174 (36%), Gaps = 8/174 (4%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
F K ++ T + ++L ++++ + + L + + +Q +P
Sbjct: 12 FIKPFIVTFCIVMFVLLMLFLFKYIDDLIGK-----GFEWYVILQLIGYQCAVQMQMALP 66
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L+ +I+ F NL + ELV +A G+S+ + + P + L + L + I
Sbjct: 67 LSMLLSSIMTFGNLGESYELVAIKAAGVSLRKAMTPLFILVALFSAGSFLFSDYILPVVN 126
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
L+ ++ K I P + + I AK + + +
Sbjct: 127 LKMGSLLYDVRN--KKADFLIKPGIFNNTIPGYA-IRAKSKSKDGTVLNELMIY 177
Score = 45.2 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
K+ + R +F+ + + + + I A + R + V I + +
Sbjct: 358 KAFRDKDIRYRLEFHRKFTLAVSCLLLFGIGAPLGA-IIRKGGLGLPVVMAIIFFLIYHI 416
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I T+ + K L P+ + +I+ L+I +
Sbjct: 417 ISTVSEKAAKDASLAPMTGMWMAIIILTPLAIFL 450
>gi|126664027|ref|ZP_01735021.1| hypothetical protein FBBAL38_12830 [Flavobacteria bacterium BAL38]
gi|126623976|gb|EAZ94670.1| hypothetical protein FBBAL38_12830 [Flavobacteria bacterium BAL38]
Length = 474
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/242 (12%), Positives = 72/242 (29%), Gaps = 9/242 (3%)
Query: 16 TTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVN 75
T + + +FV+ + + + P I+ ++P L+
Sbjct: 2 ITFTTVFVILFFIFVLQGIWLFIAELAGKDLDLFTIFKFLTFYAPTIVPMVLPLSVLLAA 61
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
I+ F + E ++ GIS+ + + + +L + + N + + I+L
Sbjct: 62 IMTFGSFAENYEFAAMKSSGISLQRAMKMLTITIGILALVSFFFANNVIPDAQFRFINLR 121
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI--IHR 193
+ + I + KK E T + +
Sbjct: 122 KDIVQQKPAMAIVEGQFNTIGTSNIKV---DKKTGDNGEFLEGVTMHVKNNNMGLGANTI 178
Query: 194 KDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
A ++ ++ ++L+ Y Y I K +P F+K+
Sbjct: 179 IKAKRGVLTSQDDSNYLQLELYDGYYYEDIHPKKYEERKRLPFTKSSFKKYVINIDLTKL 238
Query: 250 YE 251
+
Sbjct: 239 NQ 240
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 1/85 (1%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ VI + M I A + R + + + + + I T +
Sbjct: 356 HWMAIHEKFVIAYACLLMFFIGAPLGA-IIRKGGLGLPIVFAMLIFIAFHFINTFGRKLA 414
Query: 330 KSGILLPVAAALIPVILTISLSILI 354
+ + P A + I+ +IL+
Sbjct: 415 EESTITPFIGAWMSSIIMTPFAILL 439
>gi|315617675|gb|EFU98281.1| conserved hypothetical protein [Escherichia coli 3431]
Length = 335
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/298 (15%), Positives = 103/298 (34%), Gaps = 12/298 (4%)
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + Q I+P + ++ L SE+ + A G+S L+ ++ ++ I +
Sbjct: 26 PEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVN 85
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ + +++ + K N + Q +N +FI + ++D
Sbjct: 86 VMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFI----ESVDGSNFKDV 141
Query: 180 TSITIDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
I K AD + +L+ + T L ++ FQ
Sbjct: 142 FLAQIRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTRFEGTALLRDFRITDFQ 197
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + + ++ RA + + I + + M L+ +S+
Sbjct: 198 DYQAIIGHHAVALDPNDTDQMDMRTLWNTDTTRARAELNWRITLIFTVFMMALMVVPLSV 257
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + + + + + + I T +KS G G L P ++ ++L+I++
Sbjct: 258 VNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 314
>gi|213423383|ref|ZP_03356371.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 285
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 49/281 (17%), Positives = 98/281 (34%), Gaps = 30/281 (10%)
Query: 86 SELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQ 145
SE+ + A G+S L+ +V ++ GI + + K +++ + K N
Sbjct: 2 SEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKANPGMA 61
Query: 146 KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAII--- 201
+ Q +N +FI + + D I K AD +
Sbjct: 62 ALAQGQFQQATNGSSVLFI----ESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQL 117
Query: 202 --YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF------SEQFASRSFYEII 253
+ V L K ++ + D T + G Q ++Q R+ +
Sbjct: 118 RDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWN-- 175
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
N RA + ++ I + + M L+ +S+ R + + + +
Sbjct: 176 -----------TDNDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGRV-LSMLPAML 223
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I T +KS G G L PV ++ ++L+I +
Sbjct: 224 LYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLALAIGL 264
>gi|27379218|ref|NP_770747.1| permease [Bradyrhizobium japonicum USDA 110]
gi|27352369|dbj|BAC49372.1| bll4107 [Bradyrhizobium japonicum USDA 110]
Length = 389
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/332 (14%), Positives = 110/332 (33%), Gaps = 29/332 (8%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G + RY F+ L + L+ ++++ + M +I + + VP +
Sbjct: 2 GSIDRYIFRTTLASFALVLVSLTGVIWITQALRGIDLMTS-QGQTILTFLGITSLVVPAL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I P ++ L SE+++ A G S ++L PF + ++ + +
Sbjct: 61 VLIISPIALMIAISHTLNKLATDSEIIVMNAAGFSPFRLFYPFFYATCVVALLVAFIAAY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A G + + + + + +++ I ++ LP + I
Sbjct: 121 LAPDGMRRIKQWDAEITADVLTNILQPG---RFAQLDKNLTIRIRERLPGGILA----GI 173
Query: 183 TIDKKNKIIHR--KDADLAII----YNDKVKLK--KVVEYQYG-RIPIDKNSTTLNIPIK 233
ID + R A+ + + L+ + ++ G R P +
Sbjct: 174 FIDDRRDPNERVSIVAEHGEVMKNDTGSFLVLETGNLQRFEVGKRDPALVAFGRYGFDMS 233
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH--NYRAETQFYFLIVIP-----LMLVA 286
Q R Y + + S S ++ + + + ++ P ++
Sbjct: 234 KFSGQGRDVTLGIRERY-LWELFSPSEDDPVYKQIPGQFRSALHDSLLAPIYPFAFAVLT 292
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFML 318
+ A + SR+ + I + F L
Sbjct: 293 FAFLGAPRTTRQSRN----FSIGSSIVAVFGL 320
>gi|205356326|ref|ZP_03223091.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni CG8421]
gi|205345711|gb|EDZ32349.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni CG8421]
Length = 341
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 54/343 (15%), Positives = 120/343 (34%), Gaps = 41/343 (11%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY +L T L +V ++ ++ ++ S L +P I+
Sbjct: 6 RYVLNQFLSTNLSIFFVLFAIVSMVFFIQLA-KLTSSIEISFLDLLKLYGFMLPRILIFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + + F L++ +E ++ +G S L F+ + L+ F ++V +
Sbjct: 65 LPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALVMIPI 124
Query: 127 GEKIGIDLIQQWKDNGDKQ------KSDIIPWM----QISNPQQDIFIGAKKILPENHIW 176
++ + + + WM + + + + I + H
Sbjct: 125 VFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSDKYENII----MYRPKHKA 180
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+D + I K+ + + D+ + K+ ++ G+ TL + + +
Sbjct: 181 DDKEQLIIAKEAHVQRKDDSFAFSLNQG-----KMYNFEQGQSIFSGEFDTLVVNTQFN- 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
++ ++ FYE ++ + + +F I I L +A TL A L
Sbjct: 235 ----TDNLQTKKFYEYWNDLNENPQRAR--------EFVIYITIALFPLASTLFALCFGL 282
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
R + V G+F +Y ++ SF + P+ A
Sbjct: 283 VTYRYEKGY--VYLGMFGVIAIYF--GLLSSFSQ----PPILA 317
>gi|323144743|ref|ZP_08079320.1| permease, YjgP/YjgQ family [Succinatimonas hippei YIT 12066]
gi|322415494|gb|EFY06251.1| permease, YjgP/YjgQ family [Succinatimonas hippei YIT 12066]
Length = 336
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/320 (12%), Positives = 98/320 (30%), Gaps = 23/320 (7%)
Query: 41 GELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQ 100
+ + LAA VP I ++P + ++ + SE+V+ R+IG S
Sbjct: 8 AAVGTVPVDIITNLAAYAVPEIAMIMLPLTLFLACLITLGRICSDSEMVVMRSIGFSPAN 67
Query: 101 LLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ 160
++ ++ + I T + L++Q ++N + + +
Sbjct: 68 VMTIAMILAFFTSIVTAFNCIYLVPWASNAKETLMKQTENNPQFLPIESGKFSSMGG--Y 125
Query: 161 DIFIGAKKILPENHIWEDFTSITIDKKNKIIHR-KDADLAII---YNDKVKLK-----KV 211
+I+I + + + + + AD + N + L+ +
Sbjct: 126 NIYIENVEEKSDGEKNIANVFVMESPFANVGNSMTIADNGYLVHDENGVLWLELDKGSRF 185
Query: 212 VEYQYGRIPIDKNSTTLNIPIK-MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA 270
P+ + + + +SR +E++ R
Sbjct: 186 EVLTKDGTSNKAIFDKFRAPVAGSNSELQEDDSISSRDTFELLNS----------GEKRG 235
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
+ + + + +T IA +S+ R + + I Y + ++
Sbjct: 236 IVEAQWRLSPIFAVFILTFIAIPLSMVNPRQGR-FARLMPAILIYASYYMFLLSCRNMIN 294
Query: 331 SGILLPVAAALIPVILTISL 350
SG I ++ +
Sbjct: 295 SGSWPLYPGLFIVPVVFLFF 314
>gi|254510429|ref|ZP_05122496.1| permease YjgP/YjgQ [Rhodobacteraceae bacterium KLH11]
gi|221534140|gb|EEE37128.1| permease YjgP/YjgQ [Rhodobacteraceae bacterium KLH11]
Length = 379
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/367 (13%), Positives = 128/367 (34%), Gaps = 35/367 (9%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
YF + L +F L + + ++ + +++ S A +P +I+ ++
Sbjct: 7 YFLRQLLVLFGFFTLVLVGVFWITRSVSLFDRVIS-GGQSAFVFLEFTALTLPTLIRTVM 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+R SE+ + A G S W+L ++ + G+ ++ + +
Sbjct: 66 PMAVFAAAVYATNRLSRESEMTVMLATGSSPWRLARAVLMFGLSAGLMMAVISVFLRPAS 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ + + Q + ++ ++ + + +I + + E F S D
Sbjct: 126 VERLEQRQAEVAGDVTAQLLNEGEFLHPADG---VTVYISRIDLDGTLHEVFVSDRRDTV 182
Query: 188 NKIIHRKDADLAIIYNDK----VKLKKVVEYQYGR-----IPIDKNSTTLNIPIKMDGFQ 238
N + + + A + N + + V ++ + ++ +
Sbjct: 183 NPVSY--SSTTAYLVNQASGIHLVMLDGVALRFDQQGNTLSSTLFEDAAYDVSELTNNTG 240
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-ASVSLE 297
+ + E+I+ +++ + + + + +A+ L+ +++ L
Sbjct: 241 TDNRSREAIPTIELIRDRDTVAETDDHSLGQLVDELHQRFSWIAICIAVALVGYSTLMLG 300
Query: 298 -FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA----L----IPVILTI 348
FSR I+ F + ++ G G + PV +P IL +
Sbjct: 301 SFSRFGLWPQILGA-----FTILVLLE-----GVRGFVSPVVIEDPRLWVLLYLPAILGV 350
Query: 349 SLSILIL 355
+S L L
Sbjct: 351 VVSGLFL 357
>gi|78776668|ref|YP_392983.1| permease YjgP/YjgQ [Sulfurimonas denitrificans DSM 1251]
gi|78497208|gb|ABB43748.1| permease YjgP/YjgQ [Sulfurimonas denitrificans DSM 1251]
Length = 359
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 122/360 (33%), Gaps = 26/360 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++++Y +Y++ + LL ++ + D ++ + S + + + I
Sbjct: 2 LVFKYITFHYIRYFIIILLALVLFLVGFDYMGNTEKL----DISANLFLIYVVYKTFYAI 57
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + I L R++ LV ++G S +L PFVV + + L I+
Sbjct: 58 DMLLPLSLIFAMISTKIFLIRSNALVSFYSLGYSRIDILKPFVVVATAM---ITLFISLH 114
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ S + + + N + + F+ K+LP E+ +
Sbjct: 115 SISNFARADEFAKNIRKNAQYLSPTRDLFFTYKDK----FVYFSKLLPLQESAENIRVFS 170
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
N + A A ND +K + + I D + ++ Q F
Sbjct: 171 F-VDNSLKEVLVAKRASYRNDAWLIKMADIITKPDDISFDSLGIKVTQKDNLEILQGFRP 229
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQ----------FYFLIVIPLMLVAMTLIAA 292
+ YE K++FS K I + Q Y + V P + ++ +I
Sbjct: 230 KM-LDQVYE--GKVNFSIKDAIDAYWLLRDQNINTNIVKSALYKIFVYPFFVPSLVVIIF 286
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
R + I S M++ + + + ++P +L ++
Sbjct: 287 FFVPVSVRFLNVSLFSFAAIISSLMIWAFLFSLVELSNHKTIPSELGIVLPNLLLFLFAL 346
>gi|57237667|ref|YP_178915.1| hypothetical protein CJE0913 [Campylobacter jejuni RM1221]
gi|86152068|ref|ZP_01070280.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
260.94]
gi|86153259|ref|ZP_01071463.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|121613133|ref|YP_001000511.1| hypothetical protein CJJ81176_0843 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|157415093|ref|YP_001482349.1| hypothetical protein C8J_0773 [Campylobacter jejuni subsp. jejuni
81116]
gi|167005447|ref|ZP_02271205.1| hypothetical protein Cjejjejuni_04350 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|315124344|ref|YP_004066348.1| hypothetical protein ICDCCJ07001_795 [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|57166471|gb|AAW35250.1| membrane protein, putative [Campylobacter jejuni RM1221]
gi|85840853|gb|EAQ58103.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
260.94]
gi|85842985|gb|EAQ60196.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|87249473|gb|EAQ72433.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
81-176]
gi|157386057|gb|ABV52372.1| hypothetical protein C8J_0773 [Campylobacter jejuni subsp. jejuni
81116]
gi|307747735|gb|ADN91005.1| Putative membrane protein [Campylobacter jejuni subsp. jejuni M1]
gi|315018066|gb|ADT66159.1| hypothetical protein ICDCCJ07001_795 [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|315058276|gb|ADT72605.1| Predicted permease YjgP/YjgQ family [Campylobacter jejuni subsp.
jejuni S3]
gi|315928910|gb|EFV08167.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
305]
gi|315931165|gb|EFV10138.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
327]
Length = 341
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 54/343 (15%), Positives = 119/343 (34%), Gaps = 41/343 (11%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY +L T L +V ++ ++ ++ S L +P I+
Sbjct: 6 RYVLNQFLSTNLSIFFVLFAIVSMVFFIQLA-KLTSSIEISFLDLLKLYGFMLPRILIFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + + F L++ +E ++ +G S L F+ + L+ F ++V +
Sbjct: 65 LPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALVMIPI 124
Query: 127 GEKIGIDLIQQWKDNGDKQ------KSDIIPWM----QISNPQQDIFIGAKKILPENHIW 176
++ + + + WM + + + + I + H
Sbjct: 125 VFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSDKYENII----MYRPKHKA 180
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+D + I K+ + + D+ + K+ ++ G+ TL + + +
Sbjct: 181 DDKEQLIIAKEAHVQRKDDSFAFSLNQG-----KMYNFEQGQSIFSGEFDTLVVNTQFN- 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
++ ++ FYE ++ + + E Y I L +A TL A L
Sbjct: 235 ----TDNLQTKKFYEYWNDLNENPQRAR------EFVIYTTIA--LFPLASTLFALCFGL 282
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
R + V G+F +Y ++ SF + P+ A
Sbjct: 283 VTYRYEKGY--VYLGMFGVIAIYF--GLLSSFSQ----PPILA 317
>gi|222148153|ref|YP_002549110.1| hypothetical protein Avi_1543 [Agrobacterium vitis S4]
gi|221735141|gb|ACM36104.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 399
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/365 (13%), Positives = 141/365 (38%), Gaps = 19/365 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L Y + + L LL + +++ + N + + SI A LA +P I
Sbjct: 7 KLLESYILRRVAQMFLTALLPVLAIIWTTQVLARINLVTD-TGQSIGSFATLATLILPTI 65
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I ++PF ++ +N SEL + A G S +L P ++ ++ + + T+++ N
Sbjct: 66 IPIVMPFALVIGITQSLTAMNNDSELAVIDAAGASRAVILRPILLFALAISVITLVITNE 125
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG--AKKILPENHIWE--- 177
+ + +I + + + ++ + A ++L + +
Sbjct: 126 VQPKVKVAARQMIANAYADLLSTVIEEKTFRKVEDGLYVQISQRLAGRVLKGLFVADYRD 185
Query: 178 -DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP-IDKNSTTLNIPIKMD 235
++ I ++ + A I+++ +V+ + G + + +S ++ +
Sbjct: 186 PAYSLIYYAREGAVDETGTAL--IMHDGEVQ----RKAPGGTVSIVRFDSYAFDLSDLTE 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
K + + RS ++ ++ H + + + L+ A LI+ +++
Sbjct: 240 TRGKAKMRPSDRSLSFLLN-PDTNDDDYKDHPGEYRAELHKRMTEWLLPFAFALISLAIA 298
Query: 296 LEFSRSNQPRII--VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+RS++ + + + +L + + +S V + + +++ L
Sbjct: 299 -GDARSHREARLHPMVSALTLALVLRWLTFYAANKSESNAAFIVLM-YATPLASAAIATL 356
Query: 354 ILLQK 358
+L+++
Sbjct: 357 MLMRQ 361
>gi|56461047|ref|YP_156328.1| permease [Idiomarina loihiensis L2TR]
gi|56180057|gb|AAV82779.1| Predicted permease [Idiomarina loihiensis L2TR]
Length = 363
Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 55/351 (15%), Positives = 121/351 (34%), Gaps = 26/351 (7%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
LK+ L L M + + + E + + L + +P ++ I+P +
Sbjct: 6 LKSQLAVLFILMTIFVSQKFVRVLSDASE-GDIPGAIIFQLLSLNLPALLSLILPLSLFL 64
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
++ + +E+ + A G+S W + +V S++L I T +
Sbjct: 65 GILLAHGRIYADNEMTVLHACGVSEWYVTRVTLVLSLILAIITASFTLWLVPWSLDQEQK 124
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII-- 191
L + + ++P Q I +++ E + E F + + ++
Sbjct: 125 LEDKARSESGLTA--LMPGRFQQASNQKAVIFVQRVGDEGDLEEVFVAQHTHNQGELQSG 182
Query: 192 HRKDADLAII----YNDKV-KLKKVVEYQYGRIP---IDKNSTTLNIPIKMDGFQKFSEQ 243
A + + +L + Y + +S L I Q+ SEQ
Sbjct: 183 SVVMAKTGKVISETTGSQWLELGQGKRYAGDDDSYQMMSFDSYQLQI-----KEQQASEQ 237
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
Y ++ +S + I + + I IPL + +TLIA +S R +
Sbjct: 238 LRKLEAYPTVELLSRKEPAAI-------AELQWRIAIPLAMPLLTLIAVPLSRVNPRQGK 290
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ A + + ++ KS + G++ P+ + + + +
Sbjct: 291 FGRM-APALLIYLGYFLLLMAAKSAIRDGVIPPIIGLWWIHFILLIFGLAL 340
>gi|296274436|ref|YP_003657067.1| permease YjgP/YjgQ family protein [Arcobacter nitrofigilis DSM
7299]
gi|296098610|gb|ADG94560.1| permease YjgP/YjgQ family protein [Arcobacter nitrofigilis DSM
7299]
Length = 339
Score = 71.0 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 58/346 (16%), Positives = 118/346 (34%), Gaps = 32/346 (9%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y + T L + +I L I + + + +I L A +P II
Sbjct: 3 LKQYLLSQFSNTFFPIFLVLFFITSIIFLVRIAS-ITSVITLNIFELGTLYAYNLPNIIF 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P V ++ L+ EL++ + G++ +L F+ + L+ + +++ +
Sbjct: 62 YTMPISFFVAMVITLSKLSSEYELIVVTSFGLNPSNILKVFLPITFLISLSLLILSIGLI 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + +I Q + D I K ++ ++E+
Sbjct: 122 PKTKYLSQQMINQKTKEANFNIKASEF----GQKFGDWLIYISK--KDDKLYEEVKLFKT 175
Query: 185 DKKNKIIHRKDADLAIIYNDK----VKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQK 239
+ K A A + ND LK + + + I++ + ++I + Q
Sbjct: 176 ENKGT-DQFIIAKNARLNNDAGNLSFILKDGKAFYFEQDKINQIDYKVMHINDTLSESQI 234
Query: 240 FSEQFASRSFYEIIK-KMSFSNKSNIFHNYRAETQFYFLIVI-PLMLVAMTLIAASVSLE 297
+ YE K +++ F FY L I P + + + +
Sbjct: 235 TP----FTNAYEYWKERINSDGDIAKFS-------FYVLTSIFPFISIYLV---VAFGYF 280
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIIT-IMKSFGKSGILLPVAAALI 342
R + VAY + S M Y I + KS G + +
Sbjct: 281 NPRYEK-NRSVAYAVISVVMYYLISDPLTKSIGLLS-IPSIIVFWT 324
>gi|83644756|ref|YP_433191.1| permease [Hahella chejuensis KCTC 2396]
gi|83632799|gb|ABC28766.1| predicted Permease [Hahella chejuensis KCTC 2396]
Length = 365
Score = 71.0 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/305 (14%), Positives = 105/305 (34%), Gaps = 9/305 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M IL RY + L + L +++ + + S + R+P
Sbjct: 1 MFIIL-RYLSRQLLVSMLAVAGVLLLIFMSGRFIKYLADAAQ-GKLSADVLFAIMGYRLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ I+P + ++ + + SE+ + A G++ +QL+ +V ++L+ + +
Sbjct: 59 GFLELILPLGLFIGILLAYGRMYLESEMTVLFACGMNRFQLIKLTMVSALLVMLVVGAMS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ G + ++ + + + P S + + + + ++
Sbjct: 119 LYVSPWGLRQVDEIFSDQSKITEFEL--LAPGRFQSLRSGERVTYTEGLSSDKREMQNVF 176
Query: 181 SITIDKKNKIIHRKDADLAI-IYNDKVKLKKVVEYQYGRIPIDKNSTTLN-IPIKMDGFQ 238
D ++ I A + + + VV ++ R I G +
Sbjct: 177 IAERDSESGSISVLAAKRGTQLVDPSTGSRFVVLHEGARYQGRPGEMDYRVIEYDAYGIK 236
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + K S +S N + + I IPL++ + L+A +S
Sbjct: 237 IAEPDAEAEKTRDEAKPTSELWRS---DNPKDRALLQWRISIPLLVPIVALLAIPLSRVN 293
Query: 299 SRSNQ 303
R +
Sbjct: 294 PRQGR 298
>gi|332880892|ref|ZP_08448562.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332681066|gb|EGJ53993.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 633
Score = 71.0 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/191 (19%), Positives = 74/191 (38%), Gaps = 5/191 (2%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAV--LAATRVPLIIQQIIPFI 70
+ +L F+ I +F+ + + + EL ++ + +I +P
Sbjct: 12 FKAYSLLFVGTFFICLFIFMMQFMWRYVDELIGKGLTLDVLAHFFYYAGLTLIPMSLPLA 71
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
L+ +++ F NL EL+ +A GI + ++L P ++ +ILL I + N +K
Sbjct: 72 ILLASLITFGNLGERFELLSMKAAGIPLIRILQPIIIFNILLCIGSFYFQNVTGPEAQKK 131
Query: 131 GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI 190
LI K + + + P +IF+ +K EN + + +
Sbjct: 132 FYTLIYSMKQKSPELEIPEGIFYSEI-PGYNIFV--EKKGKENGMLYGVMIYSTTDGYED 188
Query: 191 IHRKDADLAII 201
AD A +
Sbjct: 189 AQIVLADSAEL 199
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 7/120 (5%)
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ QK + F +I K +++ + L + I A +
Sbjct: 339 NAMQKSTVATNEYEFRGLISKDIDQ------STRTHWVEWHKKFTLSLACLFFFFIGAPL 392
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + V + Y I + KSG +P + ++ + I +
Sbjct: 393 GA-IIRKGGLGVPVVISVTIFIFYYIINVSGEKMAKSGEWVPWFGEWLSSMVLCPIGIFL 451
>gi|294508120|ref|YP_003572178.1| Conserved hypothetical protein containing permease domain
[Salinibacter ruber M8]
gi|294344448|emb|CBH25226.1| Conserved hypothetical protein containing permease domain
[Salinibacter ruber M8]
Length = 492
Score = 71.0 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 55/158 (34%), Gaps = 3/158 (1%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
+S L A + ++ +P L+ ++ F L + + ++ GIS Q++ P
Sbjct: 63 GIPVSVIVELIAYNLAYMVVLAVPMSVLLAALMAFGELAESQYYTVIKSTGISFGQIVWP 122
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
+V + LL + N + L + G + ++ P + + + +
Sbjct: 123 ALVVAALLMGGMLYFNNVMLPEANHRARQLWSDIR--GKRPGFELRPGIFYEDMEDYSIL 180
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY 202
+ P + D T + A+ +I
Sbjct: 181 -VQDRPPGTNKLIDVTIYDYTQGRDRQAVIKAERGVIE 217
Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 5/107 (4%)
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
I+ + + + +FY I L + ++ A + L R + +
Sbjct: 365 IQNIRRDTEWQTRRIRSYQVEFYKKFSIALACLIFMVVGAPLGLALRRGG---LATIGAV 421
Query: 313 FSG-FMLYTIITI-MKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
G FMLY I + + + G P I +L + ++L
Sbjct: 422 ALGIFMLYWITLVQGEKLSERGFFPPWLGMWIANLLMSGAGLWLILY 468
>gi|123440874|ref|YP_001004865.1| hypothetical protein YE0501 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332160137|ref|YP_004296714.1| hypothetical protein YE105_C0513 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|122087835|emb|CAL10621.1| putative membrane protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318607297|emb|CBY28795.1| putative permease [Yersinia enterocolitica subsp. palearctica Y11]
gi|325664367|gb|ADZ41011.1| hypothetical protein YE105_C0513 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859699|emb|CBX70035.1| lipopolysaccharide export system permease protein lptF [Yersinia
enterocolitica W22703]
Length = 364
Score = 71.0 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/369 (13%), Positives = 126/369 (34%), Gaps = 31/369 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ +++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALVTSALAAVNTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG-----------AKKILPE 172
K +++ + N + ++ +FIG ++ P
Sbjct: 121 GPWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVTGKEFNRVFLAQLRPN 180
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
+ + R D +I N + + + RI + +
Sbjct: 181 GNQRPSVVV---ADSGYMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQ 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
++ ++Q + + H A +F++ + + + ++ M L+
Sbjct: 238 EVQQNNNAADQMTMKQLWR-------------SHQPDARAEFHWRLTLIVSVIVMALLVV 284
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+S+ R + + + + + + + + ++S SG L P + + L++
Sbjct: 285 PLSVVNPRQGRV-LSMLPAMLLYLIFFLLQSSLRSNASSGKLDPSI--WMWAVNGAYLAL 341
Query: 353 LILLQKEDG 361
++L DG
Sbjct: 342 AVILNLWDG 350
>gi|238760356|ref|ZP_04621497.1| Inner membrane protein yjgP [Yersinia aldovae ATCC 35236]
gi|238701416|gb|EEP93992.1| Inner membrane protein yjgP [Yersinia aldovae ATCC 35236]
Length = 364
Score = 71.0 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 53/369 (14%), Positives = 126/369 (34%), Gaps = 31/369 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ +V +I+ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALVLAIVTSALAAVNTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGD---------KQKSDIIPWMQISNPQQDIF--IGAKKILPE 172
K D++ + N K +D + I N F + ++ P
Sbjct: 121 GPWSSKHQDDVLNDARANPSLAALAGGQFKSSTDGNAALFIGNVNGKEFNRVFLAQLRPN 180
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
+ + + R + ++ N + + + RI + +
Sbjct: 181 GNQRPSVVV---ADRGHMTERPNGSQVVVLNKGTRYEGTALLRDFRITDFVDYQAIIGHQ 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
++ EQ + + A +F++ + + + ++ M L+
Sbjct: 238 EVQQNNNVVEQMTMKQLWS-------------SDEPEARAEFHWRLTLIVSVIIMALLVV 284
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+S R + + + + + + + + ++S +G L P+ + + L+I
Sbjct: 285 PLSAVNPRQGRV-LSMLPAMLLYLIFFLLQSSLRSNAGNGKLDPLI--WMWAVNGTYLAI 341
Query: 353 LILLQKEDG 361
++L DG
Sbjct: 342 AVILNLWDG 350
>gi|195952581|ref|YP_002120871.1| permease-like [Hydrogenobaculum sp. Y04AAS1]
gi|195932193|gb|ACG56893.1| permease-like [Hydrogenobaculum sp. Y04AAS1]
Length = 353
Score = 71.0 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 49/290 (16%), Positives = 103/290 (35%), Gaps = 8/290 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L R+ K +L T L + L F+ I N S +P+++
Sbjct: 2 LLRFITKRFLFTIFLVYLSILALFFIYQ---ISNFFITYHMKSPKILFQTILNFLPIVLF 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ V+ L R ++ ++ GI I + PF++ S+L+ +++
Sbjct: 59 YTATINVSISVFVLSHYLKRIKMFLVPQSFGIPISHIFKPFIIVSLLISFGNLMLNEFFI 118
Query: 125 TSGEKIGIDLIQQW-KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ K + + K+ + W+ + FIG ++ + I
Sbjct: 119 PNATKELKYIEHVYKKNQKYELGIARNLWIAKEKNNEKTFIGTSLATSNG-LFYNIKIIN 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRI-PIDKNSTTLNIPIKMDGFQKFSE 242
+ K NK + A AI+ N + L++ +E + I + L I + +
Sbjct: 178 V-KNNKFNYIIKAKKAIVKNGYMDLEQGIETSFSPFREIHFQTLHLKTEINPKDLNLWIK 236
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+S E++K + + + + + F F + + M IA+
Sbjct: 237 TPDEQSLTELVKT-AIVMRKEGLNMFPYISTFIFKLEFSFLPFLMVCIAS 285
>gi|71891828|ref|YP_277557.1| putative transmembrane protein, transport [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|71795934|gb|AAZ40685.1| putative transmembrane protein, transport [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 373
Score = 71.0 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 57/368 (15%), Positives = 135/368 (36%), Gaps = 34/368 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +Y K + L L ++ F L ++ + + + SI + +P
Sbjct: 2 IFTKYILKEIFRNQLIILTLLFLVCFCQKLIKMLSLVID-SGISIYLIFLCLGLNMPESG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +IPF + +V F+ L+ +E++ + + + + S ++ T++ I+ +
Sbjct: 61 KLLIPFSVFLSVLVTFYRLHAHNEIIAMYSCAVDKYIFIRSIFFFSGIVATCTMINISWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L+ + K+N + + + + + + I +
Sbjct: 121 SPYCSSYQSKLLYKIKENINLVILSEKKF--QPLATKYLILFSDSIQGNKLKNVFLSKTN 178
Query: 184 IDKKNKIIHRKDADLAII-----YNDKVKLKKVVEYQY--------GRIPIDKNSTTLNI 230
DK N + +D + + + LKK Y+ + D + + I
Sbjct: 179 PDKDNSMFIIITSDQGSVCRNPDGSRLIILKKGTYYEIYNKCELCQDVLITDFSQYQMLI 238
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM--T 288
+ F + +E +++ + + RAE + +++ + L+ M T
Sbjct: 239 NSTIKTFYEKNESVDHMFMHQLWR--------SNKSEMRAELHWRLTLLVSIFLMPMITT 290
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+ VS I + +F + + +++S + P+ + VI +I
Sbjct: 291 LLITVVSY------NYLINLLVTVFLYIIFFIFHILLRSCVLLDNINPIV--WMWVINSI 342
Query: 349 SLSILILL 356
LSI++LL
Sbjct: 343 YLSIVLLL 350
>gi|225010828|ref|ZP_03701296.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
MS024-3C]
gi|225005036|gb|EEG42990.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
MS024-3C]
Length = 462
Score = 71.0 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/176 (13%), Positives = 52/176 (29%), Gaps = 3/176 (1%)
Query: 28 VFVIDLNEIQNQMGELPNYSISRGAV--LAATRVPLIIQQIIPFITLVVNIVVFFNLNRT 85
+F+ I + L + + +P + ++++P L+ +I+ F
Sbjct: 1 MFIFIFQSIWLYIDNLAGKGLDLVIIGKFIFYLLPNLTEKVLPLTVLLSSILTFGTFAEH 60
Query: 86 SELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQ 145
E +A GIS+ + + +V +LG+ T + I + E L +
Sbjct: 61 YEFAAMKASGISLQRSMRTLIVLVSVLGLVTFYFADRIIPAAELKSYSLKKNIAKVKPAV 120
Query: 146 KSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII 201
+ +K + D T A +
Sbjct: 121 AIAEGL-FSEFEGTGMTILVQEKYGENDRYLRDVTIHKKTDNQINTTVIKAKEGEL 175
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/158 (14%), Positives = 53/158 (33%), Gaps = 6/158 (3%)
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN 267
L+ + + +P+D T N+ K Q + + + + + +
Sbjct: 284 LETPKDSAFAAMPLDSLPTIDNVLAKFTPVQGTQIISEAINTITMSALTIQTKRKELLIR 343
Query: 268 YR----AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
Y+ + + L + + + A + R + + I Y +
Sbjct: 344 YKIYNMHALSLHKKYALALSCIVLFFVGAPLGA-IIRKGGLGLPMVIAIVLFLTYYFLGV 402
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILILLQ-KED 360
++ K G + P A IP ++ + L I + + ED
Sbjct: 403 FTYNYAKEGNISPFFGAWIPTLVMLPLGIFLTKRATED 440
>gi|326561253|gb|EGE11612.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
catarrhalis 46P47B1]
Length = 437
Score = 71.0 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 57/377 (15%), Positives = 131/377 (34%), Gaps = 34/377 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY TT L ++++ L E ++ L P +
Sbjct: 57 ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAE-GGLNVGVLFRLIGYNFPYFL 115
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++VF L E+ + A GIS ++ + ++L V
Sbjct: 116 ELILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVA 175
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + ++ W++ Q D+I + + D + ++ +D I
Sbjct: 176 KPWGMERATNI---WQEQSVAQVFDLIRPQEFISSD-DYHLYVGEMGANREFLKDVIIIQ 231
Query: 184 I--DKKNKIIHR--------KDADLAII---YNDKVK--LKKVVEYQYGRIPIDKNS--- 225
+ + + I R A A N +++ L++ Y+ +
Sbjct: 232 MHTAEPSDIQSRQSHQRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGF 291
Query: 226 --TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ + +K + S E++ + S + A + + + +P +
Sbjct: 292 ERYRMTLSVKP-PEGTSHIRIEGVSTTELLSII--QGHSKRDNPQEAYAELGYRLSMPWL 348
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV--AAAL 341
++ L+A +S R + +V + + +I++ + G L PV AAL
Sbjct: 349 ILLAILLATPLSYVRPRQGRWYKLVPAILIYVAGVLVVISLKDTI-TKGKLSPVIYLAAL 407
Query: 342 IPVILTISLSILILLQK 358
++ + +++ + +
Sbjct: 408 ---LMMMVVAMYLNYHQ 421
>gi|260779401|ref|ZP_05888292.1| predicted permease [Vibrio coralliilyticus ATCC BAA-450]
gi|260604491|gb|EEX30791.1| predicted permease [Vibrio coralliilyticus ATCC BAA-450]
Length = 367
Score = 70.7 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/353 (11%), Positives = 116/353 (32%), Gaps = 20/353 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L ++ L ++ + + S + +P +
Sbjct: 2 IIVRYLIRETLKSQLAIFFILFLVFLSQKLIKVLADASD-GDIPASLVMHYVSLSMPSMG 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ F L SE+ + A GI L+ + +++ G+
Sbjct: 61 LLMLPLSLFLGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLAVITGVIAAANAFVF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ I L ++ + + P + E +
Sbjct: 121 SPMSQEKLIQLQEEVEAENSVDLLQKGQF--QGTPDGSSVVFID--DIEGKQLKHVFVAQ 176
Query: 184 IDKKNKIIHRK----DADLAIIYNDK--VKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ ++ I+ ++ + + + +++ Y+ +D T + + G
Sbjct: 177 MRPRDSILPSVSFSQSGEVKELSDGRQVIRMYDGTRYEGVPTRVDYMVTDFDQYEGLIGQ 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + ++ +S + RA+ + + I + + + +T++ +S
Sbjct: 237 RDVKPKGRDWEAIPTMQLVSN-------PDPRAQAELQWRISLVVCIPLLTMLVVPLSAV 289
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
R + + I + I+ KS + G + P+ + L
Sbjct: 290 NPRQGRFAKM-GPAILIYLAYFLSISATKSALEDGSIPSFIGMW-PINAALLL 340
>gi|332290859|ref|YP_004429468.1| permease YjgP/YjgQ family protein [Krokinobacter diaphorus
4H-3-7-5]
gi|332168945|gb|AEE18200.1| permease YjgP/YjgQ family protein [Krokinobacter diaphorus
4H-3-7-5]
Length = 528
Score = 70.7 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 61/183 (33%), Gaps = 10/183 (5%)
Query: 21 LLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFF 80
+ ++ + + E+ + + +P ++ ++P L+ +I+ F
Sbjct: 1 MFIFVLQSVWLYIQELAGR-----DLDFDVIIKFLLFAMPSLVTLVLPLSVLLTSIMTFG 55
Query: 81 NLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKD 140
N E ++ GIS+ + + + I L I + L N I + + +L +
Sbjct: 56 NFAENYEFAAMKSTGISLQRAMKSVIYFVIFLAIGSFLFANHIIPASQIEFRNLRRNIGK 115
Query: 141 NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKI--IHRKDADL 198
+ +I+ AKK + D I +K ++ A
Sbjct: 116 LKPAMLIRSGQFNEITEDFNMRV--AKKYGDRDQYLRDI-VIHQAEKGRMGNYTVIIASE 172
Query: 199 AII 201
+
Sbjct: 173 GEL 175
Score = 49.5 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 11/87 (12%), Positives = 31/87 (35%), Gaps = 1/87 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ E + V+ + + + A + R + + G+ + I K+
Sbjct: 340 SKFEISLHEKYVLGFSCILLFFVGAPLGA-IIRKGGLGLPIVIGVVVFLTFHFIGIFAKN 398
Query: 328 FGKSGILLPVAAALIPVILTISLSILI 354
++ + P A+ + + + L I +
Sbjct: 399 SAENNSISPFVASWLSTFILLPLGIYL 425
>gi|223038562|ref|ZP_03608855.1| methionyl-tRNA formyltransferase [Campylobacter rectus RM3267]
gi|222879964|gb|EEF15052.1| methionyl-tRNA formyltransferase [Campylobacter rectus RM3267]
Length = 353
Score = 70.7 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 56/361 (15%), Positives = 123/361 (34%), Gaps = 31/361 (8%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY Y K + + + ID+ M N + + + T + +
Sbjct: 6 RYVGWLYFKYFVILFVALTLFYVGIDILTNLKSMPASANLKLLYFGLTSLT----AVNYV 61
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + I F++ R++ELV A+GI +L+ P ++ + V +
Sbjct: 62 LPLSLIFALIASEFSMIRSNELVSFYALGIDKNRLIKPPFYIALTITFVYVGLNFTPFAY 121
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ G ++++ N + SDI + F+ + P + +D I+
Sbjct: 122 AYEYGRNIVK--LSNLSRTSSDIFLKFEGK------FVYMDSLNPISGEAKDVRIFDING 173
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVV-EYQYGRIPIDKNSTTLNI--------PIKMDGF 237
N + A +D +K+ I + + + K
Sbjct: 174 SN-LRSATFGLSARFVDDLWLVKQAKIVNLPQNIKLGEKGLDIKRLGELKTLENFKPKTI 232
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA---ASV 294
+ + + ++ + + + + + K+ +T Y L P M LI V
Sbjct: 233 ENAAAESSAITISDAVDYIQ-AFKNEGIGLNSVKTTLYNLAFSPFFAPFMVLIIYYFLPV 291
Query: 295 SLEFSRSN-QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+ F + I + L+ ++ + +G++ P L+PVIL + +
Sbjct: 292 TGRFFNLALKSFIFTIASLCVWGALFVMMRFAR----NGVISPEIGVLLPVILLGTYAFY 347
Query: 354 I 354
+
Sbjct: 348 L 348
>gi|283957186|ref|ZP_06374650.1| hypothetical protein C1336_000800059 [Campylobacter jejuni subsp.
jejuni 1336]
gi|283791362|gb|EFC30167.1| hypothetical protein C1336_000800059 [Campylobacter jejuni subsp.
jejuni 1336]
Length = 341
Score = 70.7 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 54/343 (15%), Positives = 119/343 (34%), Gaps = 41/343 (11%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY +L T L +V ++ ++ ++ S L +P I+
Sbjct: 6 RYVLNQFLSTNLSIFFVLFAIVSMVFFIQLA-KLTSSIEISFLDLLKLYGFMLPRILIFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + + F L++ +E ++ +G S L F+ + L+ F ++V +
Sbjct: 65 LPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALVMIPI 124
Query: 127 GEKIGIDLIQQWKDNGDKQ------KSDIIPWM----QISNPQQDIFIGAKKILPENHIW 176
++ + + + WM + + + + I + H
Sbjct: 125 VFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSDKYENII----MYRPKHKT 180
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+D + I K+ + + D+ + K+ ++ G+ TL + + +
Sbjct: 181 DDKEQLIIAKEAHVQRKDDSFAFSLNQG-----KMYNFEQGQSIFSGEFDTLVVNTQFN- 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
++ ++ FYE ++ + + E Y I L +A TL A L
Sbjct: 235 ----TDNLQTKKFYEYWNDLNENPQRAR------EFVIYTTIA--LFPLASTLFALCFGL 282
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
R + V G+F +Y ++ SF + P+ A
Sbjct: 283 VTYRYEKGY--VYLGMFGVIAIYF--GLLSSFSQ----PPILA 317
>gi|299135068|ref|ZP_07028259.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
gi|298590045|gb|EFI50249.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
Length = 381
Score = 70.7 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/310 (11%), Positives = 101/310 (32%), Gaps = 25/310 (8%)
Query: 16 TTLYFLLGAMILVFVIDLNEIQNQMG--ELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
T L FL+ + L VI + + + ++ + +P++ I P L+
Sbjct: 5 TLLSFLIVLVSLTGVIWVTQALRGIDLMTAQGQTVLVFLGITGLAIPVLALIIAPLAMLL 64
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
L+ SE+++ A G+S W+ L PF+V ++++ + +A +
Sbjct: 65 AVTHTLNRLSADSEVIVMNAAGLSPWRFLRPFMVSTVIVACLISFLAIFLAPECLRALRR 124
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
+ + ++++ + + ++ P + + ID + R
Sbjct: 125 WHTEIGADVLANVLQPGQFIRLD----KLVLRVQERRPGGVL----VGVFIDDQRNPAER 176
Query: 194 KD--ADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+ A ++ + L ++ K+ + +FS+ +
Sbjct: 177 INITAQNGVVQKTDKGSFLVLSDGNLQRFQAD--KKDPLIVAFKSYAFDMSQFSQAPQTY 234
Query: 248 SFYEIIKKMSFSNKSNIFHNY------RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
++ + + + + + ++ L ++A + L R+
Sbjct: 235 NYNARERFIGELISPPKDDAVAQRSLGQFRAELHDRLLAGLYPFVFVILAFAF-LGPPRT 293
Query: 302 NQPRIIVAYG 311
+ A
Sbjct: 294 TRQGRNFAVS 303
>gi|163788154|ref|ZP_02182600.1| hypothetical protein FBALC1_07233 [Flavobacteriales bacterium
ALC-1]
gi|159876474|gb|EDP70532.1| hypothetical protein FBALC1_07233 [Flavobacteriales bacterium
ALC-1]
Length = 637
Score = 70.7 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
+ ++ A +P +I ++P L+ +I+VF N E ++ GIS+ + +
Sbjct: 20 DLDVAVTAKFIMYYMPKLIPLVVPLTVLLSSIMVFGNFAENYEFAAMKSTGISLQRAMRS 79
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
V + LGI N + GE +L + N K+K + N +I I
Sbjct: 80 LSVFIVALGIGCFFFANNVIPWGEYNFYNL----RRNIAKKKPALAIAEGQFNEIGNINI 135
Query: 165 GAKKILPENHIWEDFTSIT 183
++ +N + I
Sbjct: 136 KVEEKSGDNGQFLKNVIIH 154
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 36/110 (32%), Gaps = 1/110 (0%)
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+S S +I+ + + + + V+ + + + A + R
Sbjct: 315 SSNSTRQILDSNKKTFEKKSIILNKHIIVLHDKFVLAFACIILFFVGAPLGA-LIRKGGL 373
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I Y K+ + G P+ + + + + LS+ +
Sbjct: 374 GLPMVIAIVLFLTYYFFGIFAKNSAEKGSFSPILGSWLSTAIMLPLSVYL 423
>gi|118497255|ref|YP_898305.1| membrane protein of unknown function [Francisella tularensis subsp.
novicida U112]
gi|194323557|ref|ZP_03057334.1| putative permease, YjgP/YjgQ family [Francisella tularensis subsp.
novicida FTE]
gi|208779048|ref|ZP_03246394.1| putative permease, YjgP/YjgQ family [Francisella novicida FTG]
gi|254372628|ref|ZP_04988117.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
novicida GA99-3549]
gi|118423161|gb|ABK89551.1| conserved membrane protein of unknown function [Francisella
novicida U112]
gi|151570355|gb|EDN36009.1| permease YjgP/YjgQ family protein [Francisella novicida GA99-3549]
gi|194322412|gb|EDX19893.1| putative permease, YjgP/YjgQ family [Francisella tularensis subsp.
novicida FTE]
gi|208744848|gb|EDZ91146.1| putative permease, YjgP/YjgQ family [Francisella novicida FTG]
Length = 360
Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 55/365 (15%), Positives = 118/365 (32%), Gaps = 36/365 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + + I +P +
Sbjct: 2 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYS-QGLGIDSIVKFVILTIPENV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL----LNPFVVGSILLGIFTVLV 119
+ P + ++ F +E+ ++ A GI+ Q+ L P V +I + + TV+
Sbjct: 61 SLVAPIAIFLAIVICFGKYFANNEMFVTLAGGITWMQIVKNTLKPVVALTI-ITLITVMY 119
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWED 178
+NP++ I + II P I IG K + D
Sbjct: 120 LNPLSKQTLDIYRASLSAKALLSSITDQKII-----KAPDGKIIYIGNKS----GNTLSD 170
Query: 179 FTSITIDKKNKIIHRKDADLAIIYND----KVKLKKVVEYQYGRIPIDKNS-------TT 227
++ A A I +D + V Y + + T
Sbjct: 171 VFLYQNTPQDGEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYT 230
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ D ++ + E +F++K+N + +F+ I + ++
Sbjct: 231 IFDNSDRDYNHDRVDRLYMHTLIE-----NFNDKTNG---TAYKAEFFGRINNAISVIVS 282
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
+L+A ++ R N+ + + + + + +G + +P I
Sbjct: 283 SLLALALCRLRPRQNKYAK-LLPSVVVLAIYLCTNMFINTLMANGSVPVWIGFWLPHIFF 341
Query: 348 ISLSI 352
++
Sbjct: 342 TIFAV 346
>gi|83816098|ref|YP_446193.1| hypothetical protein SRU_2087 [Salinibacter ruber DSM 13855]
gi|83757492|gb|ABC45605.1| membrane protein, putative [Salinibacter ruber DSM 13855]
Length = 473
Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 55/158 (34%), Gaps = 3/158 (1%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
+S L A + ++ +P L+ ++ F L + + ++ GIS Q++ P
Sbjct: 44 GIPVSVIVELIAYNLAYMVVLAVPMSVLLAALMAFGELAESQYYTVIKSTGISFGQIVWP 103
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
+V + LL + N + L + G + ++ P + + + +
Sbjct: 104 ALVVAALLMGGMLYFNNVMLPEANHRARQLWSDIR--GKRPGFELRPGIFYEDMEDYSIL 161
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY 202
+ P + D T + A+ +I
Sbjct: 162 -VQDRPPGTNKLIDVTIYDYTQGRDRQAVIKAERGVIE 198
Score = 60.6 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 5/107 (4%)
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
I+ + + + +FY I L + ++ A + L R + +
Sbjct: 346 IQNIRRDTEWQTRRIRSYQVEFYKKFSIALACLIFMVVGAPLGLALRRGG---LATIGAV 402
Query: 313 FSG-FMLYTIITI-MKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
G FMLY I + + + G P I +L + ++L
Sbjct: 403 ALGIFMLYWITLVQGEKLSERGFFPPWLGMWIANLLMSGAGLWLILY 449
>gi|262376976|ref|ZP_06070202.1| permease YjgP/YjgQ family protein [Acinetobacter lwoffii SH145]
gi|262308014|gb|EEY89151.1| permease YjgP/YjgQ family protein [Acinetobacter lwoffii SH145]
Length = 366
Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/323 (14%), Positives = 103/323 (31%), Gaps = 16/323 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFG-VAAQGRLDAGILFSIIGYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL V +++ I ++
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVMNGSGVSRHQLARLLVPMTLVFLIAQAGLMLWA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A G + L ++ I A + + +D
Sbjct: 121 APWGIRQFEALTTSQAVRTGFDLVRPKEFI----SSGPYTIYAGDLSEDRKNLKDIFFYQ 176
Query: 184 I-DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+K+ K A A VV+ GR T + + ++ E
Sbjct: 177 RAEKEGKPDVMILAQEATRIEVPNDAANVVDLVNGRRYEIYPGTPQYTQAEFESYRLRLE 236
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAET---QFYFLIVIPLMLVAMTLIAASVSLEFS 299
F ++ S ++ N + + + + +P ++ ++A ++S
Sbjct: 237 SDEEAQFAS--TEVEALPTSQLWQNRQDPVVASELGWRVFVPFAILIALILAVALSEVSP 294
Query: 300 RSNQ-----PRIIVAYGIFSGFM 317
R + P +++ + M
Sbjct: 295 RQGRYLKLFPALMIFASLIVALM 317
>gi|260914418|ref|ZP_05920887.1| inner membrane protein YjgP [Pasteurella dagmatis ATCC 43325]
gi|260631519|gb|EEX49701.1| inner membrane protein YjgP [Pasteurella dagmatis ATCC 43325]
Length = 368
Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 105/314 (33%), Gaps = 24/314 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + L +++ F L + L +P +
Sbjct: 2 ILTRYLIKEVFKSQIAILFILLLIFFCQQLVRVLGSAAN-GKVPADLVLSLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ ++ S+L + +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVRVVMLLSLLTASIATYNVFWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+++Q+ K N ++ ++ + +FI ++ D
Sbjct: 121 TPWAINKQSEILQEAKANPTMGALAAGQFISTNSNEFVLFI----DKIVDNQINDVYLFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNST---TLNIPIKM 234
++ + A+ + + + L+ + D T +
Sbjct: 177 TRERGNLKPAVLVAERGELKSLPNGDQILTLENSERVEGSAALPDFRITHFDEYQAYLGH 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ S E++ S + K+ + N+R ++ +PL M LIA +
Sbjct: 237 QDINNEKNEAEELSVNELLNSTSPAAKAEL--NWRVSL----VLAVPL----MALIAVPL 286
Query: 295 SLEFSRSNQPRIIV 308
S R + ++
Sbjct: 287 SRVNPRQGRFAKVL 300
>gi|167004981|ref|ZP_02270739.1| hypothetical protein Cjejjejuni_01670 [Campylobacter jejuni subsp.
jejuni 81-176]
Length = 351
Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 56/359 (15%), Positives = 122/359 (33%), Gaps = 23/359 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I YF + K Y++ + IDL + + N + L+ + VP
Sbjct: 3 IFSFYF-RDLFKKFFYYIFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 59
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI-WQLLNPFVVGSILLGIFTVLVINP 122
++P + +V ++ R +E V A+G+S + +L PF+ I+ L
Sbjct: 60 --VLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNF-- 115
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ D + NG +++ +N F+ KI + ++
Sbjct: 116 ---TSFAYANDYKRNILKNGTIMNQSGEVFLKFNNN----FVYISKINNGQNSAQNIKIF 168
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQ--- 238
I+ N + A A + L+ + + + + ++ +
Sbjct: 169 NINDLN-LSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFK 227
Query: 239 -KFSEQFASRSFYEIIKKMSFSN--KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
K E AS S Y I + K+ + + Y + P + LI
Sbjct: 228 PKIIEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFFAPFLMLIMYYFF 287
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+R I+ M++ ++ ++ ++ ++ ++P+I+ LS +
Sbjct: 288 PVIARFFNLAIVTFVTFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILGCLSAYM 346
>gi|39936124|ref|NP_948400.1| permease YjgP/YjgQ [Rhodopseudomonas palustris CGA009]
gi|192291842|ref|YP_001992447.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
TIE-1]
gi|39649978|emb|CAE28502.1| possible permease [Rhodopseudomonas palustris CGA009]
gi|192285591|gb|ACF01972.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
TIE-1]
Length = 388
Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/339 (13%), Positives = 107/339 (31%), Gaps = 27/339 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G + RY F+ L + + ++++ + M +I L VP++
Sbjct: 2 GSIDRYIFRTTLVSFAVVMGSLTGVIWITQALRGIDLMTS-QGQTIITFLGLTGLAVPVL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I P ++ L SE+++ A G+S +L PF ++++ +++
Sbjct: 61 VLVIAPIALMIAVAHTLNRLATDSEIIVMNAAGLSPIRLFRPFFYATMVVAALVIIIGAY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA G + + + + + +Q + I ++ P + +
Sbjct: 121 IAPDGLRRIARWDSEITADVLANVLQPG---RFAQLEQGLTIRVRERQPGGLL----VGV 173
Query: 183 TIDKKNKIIHR--KDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNI----PI 232
ID R AD + + L+ ++ + +
Sbjct: 174 FIDDARAPNERVSIIADHGTVVKNDKGSFLVLEDGHLERFQTGKQEPALVAFSRYAFDMS 233
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL-----MLVAM 287
K + + R +E++ ++ + ++ P+ VA
Sbjct: 234 KFSRARDVAYGIRERYLWELLWPAENDPLLARLPTE-FRSEMHDRLLAPIYPFFFAAVAF 292
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGI---FSGFMLYTIIT 323
+ + + SR+ V +GF L I
Sbjct: 293 AFLGLARTTRQSRNFSMAGAVLVAFVVRLAGFALSVIAN 331
>gi|283778149|ref|YP_003368904.1| permease [Pirellula staleyi DSM 6068]
gi|283436602|gb|ADB15044.1| permease YjgP/YjgQ family protein [Pirellula staleyi DSM 6068]
Length = 395
Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 55/389 (14%), Positives = 119/389 (30%), Gaps = 45/389 (11%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ + L + A++ + V + Q L L +P + +P
Sbjct: 4 IVRQVVWDILQWFTIAIVSLTVFMMLVFVGQQARLYGLGALAILRLIPYILPNALAFAVP 63
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L VV+ ++ +E+V +++GIS ++ P + + LL + V + + + G
Sbjct: 64 GSILFTVCVVYGRMSSDNEVVAIKSMGISPMVVVWPSLALAFLLSLVAVWLNDVAFSWGV 123
Query: 129 K-------IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ I + S + + + + I EN+ FT
Sbjct: 124 TGMRRVVLQSVEEICYGMLRTQRSYSGPTFQIIVKDVEGRKLIRPIMTFSENNDMPAFTL 183
Query: 182 IT--------IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIK 233
+ + ++ D ++ +V +VE + + P
Sbjct: 184 RATEAELRSNLQRNTLVVVLTDCEIDFSNGARVSSPGIVEREIKLEDATHKRVGGDSPTN 243
Query: 234 MDGFQKFSE---------------------QFASRSFYEI----IKKMSFSNKSNIFHNY 268
+ Q SE + +F+E+ + ++ Y
Sbjct: 244 LPLRQISSEVELQEIEITKLEQSLAAETGMNLMTGNFFELSPDAWQPKKKKLETARTRLY 303
Query: 269 RAETQFYFLIVIPLMLVAMTLIAAS--VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
R T+ + +A +I ++L S I G Y +
Sbjct: 304 RLRTEPWRRWSNGFACLAFVMIGTPLAITLRNSDWMSTFGRCFLPILIG--YYPFLAFAL 361
Query: 327 SFGKSGILLPVAAALIPVILTISLSILIL 355
KSG L P + I I ++ ++
Sbjct: 362 EKAKSGDLPP-YSIWIANIACAAVGYWLI 389
>gi|297171529|gb|ADI22527.1| predicted permeases [uncultured Oceanospirillales bacterium
HF0500_09M11]
Length = 354
Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/278 (12%), Positives = 95/278 (34%), Gaps = 18/278 (6%)
Query: 51 GAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI 110
++ A R+P +Q I+P + ++V ++ +E+V+ RA G +++ +V ++
Sbjct: 36 LFLVMAFRLPEFLQMILPLSLYIAILLVLGRMHMDNEMVVLRAGGQGDGRVVRSLIVPAL 95
Query: 111 LLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL 170
+ L + G+ + ++ K + + + A+ +
Sbjct: 96 VAMSVIALFALYVTPQGDAEVNRIFEEQKGRSVLELLTPGRFHVKGDDDNQRATYAESLN 155
Query: 171 PENHIWEDFTS----ITIDKKNKIIHRKDADLAIIYND----KVKLKKVVEYQYGRIPID 222
E + E + ++ +++ A + ++L +YQ D
Sbjct: 156 REEGVLESVFVADASFSSEEAGRLLT-VWARSGNLVQQDGISYLELTDGYQYQGKPGEAD 214
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
G ++ S + + + + ++ ++ +P+
Sbjct: 215 YREVAFEKARVRIGSERSSSRPPEVRGRSTLDLIDDGGNQAMAELAW---RWSLVLTVPI 271
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
M +A A +S R + ++ G+MLY
Sbjct: 272 MCLA----AVPLSRVNPRQGRFLRMIPA--VLGYMLYV 303
>gi|254437787|ref|ZP_05051281.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
307]
gi|198253233|gb|EDY77547.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
307]
Length = 379
Score = 70.3 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/368 (12%), Positives = 118/368 (32%), Gaps = 30/368 (8%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY L +F L +++ ++ + +++ S L + +P +I+
Sbjct: 5 DRYMLSQLLVLFGFFSLILVVIYWINRAVRLFDRLIA-DGQSAWVFLELTSLSLPSVIRI 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P V + V ++ SEL + +A G S ++L P + +++ ++ + +
Sbjct: 64 VLPLSAFVAAVYVTNRMSSDSELTVVQATGYSPFRLARPIIYFGLIVAALMSVLTHILVP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ + + ++ P D+ +++ P + + I I
Sbjct: 124 LSTEQLTSRQSEISQTMTARLLTPGEFL---TPSDDVTFYIRELTPSGEMLD----IFIS 176
Query: 186 KKNKIIHRK--DADLAII----YNDKVKLKKVVEYQYGR-----IPIDKNSTTLNIPIKM 234
+ R A A + ++ + + + ++ M
Sbjct: 177 ESTDPTRRTTYTAARAYLVRTENGPQLVMIDGLTQTLDHETNRLLTTGFADFVYDVGALM 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA--A 292
+ S +++ + + + Y + + + I + L+ A
Sbjct: 237 NDEFVRRVSVNGLSTLALLRPSAAAIAATNKTGYELKLRGHDRIAQAALGFVAGLVGFSA 296
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
V FSR + + + +L + + S ++ P V L +
Sbjct: 297 LVVGGFSRFG-LWRNILFAVGLVILLKILESTGTSIARAN---PAL--WPFVYLAGIGGV 350
Query: 353 ---LILLQ 357
ILL
Sbjct: 351 VISAILLH 358
>gi|86150264|ref|ZP_01068491.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88597526|ref|ZP_01100760.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
84-25]
gi|218562454|ref|YP_002344233.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|85839380|gb|EAQ56642.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88190118|gb|EAQ94093.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
84-25]
gi|112360160|emb|CAL34954.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|284926071|gb|ADC28423.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni IA3902]
gi|315927714|gb|EFV07043.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
Length = 341
Score = 70.3 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 54/343 (15%), Positives = 119/343 (34%), Gaps = 41/343 (11%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY +L T L +V ++ ++ ++ S L +P I+
Sbjct: 6 RYVLNQFLSTNLSIFFVLFAIVSMVFFIQLA-KLTSSIEISFLDLLKLYGFMLPRILIFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + + F L++ +E ++ +G S L F+ + L+ F ++V +
Sbjct: 65 LPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALVMIPI 124
Query: 127 GEKIGIDLIQQWKDNGDKQ------KSDIIPWM----QISNPQQDIFIGAKKILPENHIW 176
++ + + + WM + + + + I + H
Sbjct: 125 VFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSDKYENII----MYRPKHKA 180
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+D + I K+ + + D+ + K+ ++ G+ TL + + +
Sbjct: 181 DDKEQLIIAKEAHVQRKDDSFAFSLNQG-----KMYNFEQGQSIFSGEFDTLVVNTQFN- 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
++ ++ FYE ++ + + E Y I L +A TL A L
Sbjct: 235 ----TDNLQTKKFYEYWNDLNENLQRAR------EFVIYTTIA--LFPLASTLFALCFGL 282
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
R + V G+F +Y ++ SF + P+ A
Sbjct: 283 VTYRYEKGY--VYLGMFGVIAIYF--GLLSSFSQ----PPILA 317
>gi|260891452|ref|ZP_05902715.1| permease, YjgP/YjgQ family [Leptotrichia hofstadii F0254]
gi|260858835|gb|EEX73335.1| permease, YjgP/YjgQ family [Leptotrichia hofstadii F0254]
Length = 153
Score = 70.3 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY + +++ + ++ + + E+ ++ + +P +
Sbjct: 2 KIIDRYIYNSLFLPSIFGISIFTFIMMLNVIMEVMERLFA-SDLPFISIIDYLFYAIPGV 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV--- 119
+ Q IP + ++V+ L+ T+E+V GI +++++ P + I+L + + +
Sbjct: 61 LVQTIPMGAFLGVMLVYGGLSETNEIVAMEGSGIGLFRIIRPAFIFGIILTLIGLGLEIY 120
Query: 120 INPIA 124
+NP A
Sbjct: 121 VNPRA 125
>gi|15807417|ref|NP_296150.1| hypothetical protein DR_2430 [Deinococcus radiodurans R1]
gi|6460254|gb|AAF11980.1|AE002073_10 hypothetical protein DR_2430 [Deinococcus radiodurans R1]
Length = 350
Score = 70.3 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 54/348 (15%), Positives = 105/348 (30%), Gaps = 15/348 (4%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQ-MGELPNYSISRGAVLAATRVP 60
P IL R + LK L + L F L+ + + S S A LA P
Sbjct: 3 PSILPRSILREVLKMYGAGLALLLALQFADTLSSTLGKAIAYRATASESATAFLAIL--P 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I + + ++ L R SEL + A GI L+ P ++ L+G
Sbjct: 61 TIFNRALVLSVPFAILLGLSRLQRDSELKAAFAAGIRPLSLVWPLLLPFTLVGALAFWNA 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ +G + +K + + +
Sbjct: 121 GTVVPAGLDRWDKTWYSIFNVPEKIPTRDNYTYAPPGALYYAGRVTQAPQGQPAPLAGVM 180
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQK 239
+++ ++ L G P + TL +
Sbjct: 181 VQR----GGVVYTANSGSWNTAAQSWTLDAPWVTAPGERPRQQAGPVTLPQGDTLRPPPA 236
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+++ ++ + + S + + + Y Q P +A +AA+V
Sbjct: 237 EAKKVSNAALRTALAGESLTEQERREYTY----QLASRYADPFTPIA-FALAAAVLGLLI 291
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
R+ + +GF Y + M ++G + P AA +P ++
Sbjct: 292 RNQAAALAAVIVFIAGF--YVLWITMPQLARAGAVDPTLAAWVPSLIF 337
>gi|330997503|ref|ZP_08321352.1| permease, YjgP/YjgQ family [Paraprevotella xylaniphila YIT 11841]
gi|329570534|gb|EGG52258.1| permease, YjgP/YjgQ family [Paraprevotella xylaniphila YIT 11841]
Length = 633
Score = 70.3 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/189 (18%), Positives = 71/189 (37%), Gaps = 8/189 (4%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITL 72
++ T L ++ ++E+ + ++ A +I +P L
Sbjct: 19 FVGTFFICLFIFLMQFMWRYVDELIGK-----GLTLDVLAHFFYYASLTLIPMSLPLAIL 73
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
+ +++ F NL EL+ +A GI + ++L P ++ +ILL I + N +K
Sbjct: 74 LASLITFGNLGERFELLSMKAAGIPLVRILQPIIIFNILLCIGSFYFQNITGPEAQKKFY 133
Query: 133 DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIH 192
LI K + + + P +IF+ +K EN + + +
Sbjct: 134 TLIYSMKQKSPELEIPEGIFYSEI-PGYNIFV--EKKGKENGMLYGVMIYSTTDGYEDAQ 190
Query: 193 RKDADLAII 201
AD A +
Sbjct: 191 IVLADSAEL 199
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 7/120 (5%)
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ QK + F +I K +++ + L + I A +
Sbjct: 339 NAMQKSTIATNEYEFRGLISKDIDQ------STRTHWVEWHKKFTLSLACLFFFFIGAPL 392
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + V + Y I + KSG +P + ++ + I +
Sbjct: 393 GA-IIRKGGLGVPVVISVTIFIFYYIINVSGEKMAKSGEWIPWFGEWLSSMVLCPIGIFL 451
>gi|323166625|gb|EFZ52384.1| hypothetical protein SS53G_3091 [Shigella sonnei 53G]
Length = 335
Score = 70.3 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 108/314 (34%), Gaps = 12/314 (3%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 70 AAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
I + ++D I K AD + +L+ +
Sbjct: 130 I----ESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTR 181
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVI 280
T L ++ FQ + ++ + ++ RA + + I +
Sbjct: 182 FEGTALLRDFRITDFQDYQAIIGHQAVVLDPNDTDQMDMRTLWNTDTDRARAELNWRITL 241
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 242 VFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWM 300
Query: 341 LIPVILTISLSILI 354
++ ++L+I++
Sbjct: 301 WTVNLIYLALAIVL 314
>gi|118474326|ref|YP_891923.1| YjgP/YjgQ permease [Campylobacter fetus subsp. fetus 82-40]
gi|118413552|gb|ABK81972.1| putative permease, YjgP/YjgQ family [Campylobacter fetus subsp.
fetus 82-40]
Length = 341
Score = 70.3 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 60/360 (16%), Positives = 122/360 (33%), Gaps = 41/360 (11%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ +Y F +L T +++ ++ +I + S S L +P I+
Sbjct: 4 VNKYLFASFLSTFASLFATLFLIMSIVFFIQIAR-ITSYIEISFSELLKLYLFMLPQILL 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI---FTVLVIN 121
IP V + FF L++ +E ++ +G + N F+ S ++ + L++
Sbjct: 63 FTIPIGFFVSVAMSFFRLSKENESIVMFTLGQDPKNISNFFIFISFIVSVVMLINSLIVM 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQK---SDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
PIA + I+ + K WM +FI + ++ +E+
Sbjct: 123 PIAQNLNDNFIEYKKTKLSLNIKPSEFGQKFGSWM--------VFIEKQNDNNDSLKYEN 174
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ +N+ + I N L+ +++ + I N ++ M
Sbjct: 175 IVMYDVSDENE--RLITSQSGDIKNQNSNLELILK-KGKMYDIRDNKWNISSYENMVIRT 231
Query: 239 KFSEQ-FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S E K+ + Y L+ L +A + A S +
Sbjct: 232 LIKDNKNETYSLKEYW------LKAFSDDKRAKDLSIYTLVA--LFPLASVMFALSFGIV 283
Query: 298 FSRSNQPRIIVAY-GIFSGFMLY-TIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + I G+ F + I+ + P+ A IP+I +S L
Sbjct: 284 TYRYEKGIIYFGIFGVL--FAYFAFIMLFARQ--------PIYA--IPIIFIVSFVFSAL 331
>gi|307312964|ref|ZP_07592592.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|306907132|gb|EFN37639.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|315063568|gb|ADT77895.1| conserved inner membrane protein [Escherichia coli W]
Length = 359
Score = 70.3 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 108/314 (34%), Gaps = 12/314 (3%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 34 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 93
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 94 AAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 153
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
I + ++D I K AD + +L+ +
Sbjct: 154 I----ESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTR 205
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVI 280
T L ++ FQ + ++ + ++ RA + + I +
Sbjct: 206 FEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITL 265
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 266 VFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWM 324
Query: 341 LIPVILTISLSILI 354
++ ++L+I++
Sbjct: 325 WTVNLIYLALAIVL 338
>gi|268315816|ref|YP_003289535.1| permease YjgP/YjgQ family protein [Rhodothermus marinus DSM 4252]
gi|262333350|gb|ACY47147.1| permease YjgP/YjgQ family protein [Rhodothermus marinus DSM 4252]
Length = 481
Score = 70.3 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 62/177 (35%), Gaps = 11/177 (6%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITL 72
+ T ++ L+ ++ ++ DL + L + + ++ +P TL
Sbjct: 19 WFGTLMFLLIMQFLIKYLPDLV--------GKGLPLGVILELISYNLAYMVVLAVPMATL 70
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
+ I+ F L ++ + ++ GIS+ QL P ++ ++L + N I
Sbjct: 71 IAMIMTFGRLAESNAYQVIKSAGISLPQLTWPLLIVGLVLTGAMMYFNNLILPEANHRAR 130
Query: 133 DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
+L + K + P + + + + PE D T +
Sbjct: 131 NLWIDIQR--KKPGFQLQPGVFYDGIEGYSIL-VQHRDPETDSLRDVTIYDYRNSGE 184
Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 3/106 (2%)
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
I+ + S + R + + I + + LI + L R
Sbjct: 346 IEDLQRSIQWTERRADRYRVEIHKKFSIAVACLIFVLIGMPLGLSVRRGGLGLAGGLA-- 403
Query: 313 FSGFMLYTIITI-MKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ F+ Y I + + G L P +P ++ L + + +
Sbjct: 404 LAIFLFYWITLVQGEKLADRGYLTPWIGMWLPNLVMGLLGVALFVY 449
>gi|52425604|ref|YP_088741.1| hypothetical protein MS1549 [Mannheimia succiniciproducens MBEL55E]
gi|52307656|gb|AAU38156.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 366
Score = 70.3 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 52/358 (14%), Positives = 122/358 (34%), Gaps = 21/358 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K K+ + L +++ F L + N L +P +
Sbjct: 2 ILTRYLTKEVFKSQVAILFILLLIFFSQQLVRVLGSAAN-GNVPADLVLSLLGLGMPAMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ F L SE+ + RA G+ L+ + S+L + +
Sbjct: 61 QLMLPLCLFIAILLTFGRLYAESEISVMRACGVGQRILVKVALGLSVLTAALAAYNVLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + N + +M ++ +FI +++ +
Sbjct: 121 SPWAIQKQGQIVEDARANPNMSALSAGQFMTSNDSDFVLFI----DNIKDNKISNIYLFQ 176
Query: 184 IDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+K A+ + + L + + + ++ F ++
Sbjct: 177 TKEKGNSKPSVIVAENGELQS----LPNGDQILSLQNSQRVEGSAALPDFRITNFTEYQA 232
Query: 243 QFASRSF----YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
R+ E + + +AE + I + L + M L+A +S
Sbjct: 233 YLGHRNVDSDENETTELPLAELLALKTPAAKAELNW--RISLILAVPLMALLAVPLSKVN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP--VILTISLSILI 354
R + + + + + + + +KS G +G L L+P + + L I++
Sbjct: 291 PRQGRFAK-ILPALLLYLIYFLLQSSLKSAGGAGKLDAGL--LMPLVNLFFLLLGIML 345
>gi|110807999|ref|YP_691519.1| hypothetical protein SFV_4232 [Shigella flexneri 5 str. 8401]
gi|110617547|gb|ABF06214.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
Length = 345
Score = 70.3 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/334 (14%), Positives = 115/334 (34%), Gaps = 13/334 (3%)
Query: 24 AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLN 83
+++ F L I + + + L VP + Q I+P + ++ L
Sbjct: 1 MLLIFFCQKLVRILGAAVD-GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLY 59
Query: 84 RTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGD 143
SE+ + A G+S L+ ++ ++ I + + + +++ + K N
Sbjct: 60 TESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPG 119
Query: 144 KQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAIIY 202
+ Q +N +FI + ++D I K AD +
Sbjct: 120 MAALAQGQFQQATNGSSVLFI----ESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLT 175
Query: 203 NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS 262
+L+ + T L ++ FQ + ++ +
Sbjct: 176 ----QLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMR 231
Query: 263 NIF--HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
++ RA + + I + + M L+ +S+ R + + + + + +
Sbjct: 232 TLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFL 290
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I T +KS G G L P ++ ++L+I++
Sbjct: 291 IQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVL 324
>gi|197105168|ref|YP_002130545.1| hypothetical protein PHZ_c1705 [Phenylobacterium zucineum HLK1]
gi|196478588|gb|ACG78116.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
Length = 378
Score = 70.3 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 40/311 (12%), Positives = 102/311 (32%), Gaps = 21/311 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY + L + L + + + + S + +P +I
Sbjct: 3 LIDRYLLRQLLGPVILATLALTGVALLSQTLSGLDLIVN-QRQSALVFLKVTLLAMPQLI 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P V +V L+ E+V+ A G+S W++++P + + + +L+ +
Sbjct: 62 NMVLPIAVFVAALVALNRLHTEQEIVVCFAGGMSRWRVISPAIRLACTVAFLALLMNLWV 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ ++ ++ S ++ + + P + + A+ + + E+
Sbjct: 122 QPAA---YREMRRELFQVRTDLASTLVREGEFTEPAPGLTVYAQGVDGAGN-LENLFIHQ 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ A+ + + + + V+ + G ++ LN + S
Sbjct: 178 MRDDGSATT-YTAEQGRV--GRSQGRPVLVMRNGSNQEFSSTGVLNYLTFDEYIFDLSAL 234
Query: 244 FASRSFYEI---------IKKMSFSNKSNIFHNYRAETQFYFLIVIPL---MLVAMTLIA 291
+S + + + + I PL +AM L +
Sbjct: 235 TSSDELVHYKPSDRYPHELFFPDLQQDWERRNRLDLLAEGHARISSPLYNIAFMAMAL-S 293
Query: 292 ASVSLEFSRSN 302
A + FSR
Sbjct: 294 AIIGGGFSRLG 304
>gi|262373934|ref|ZP_06067211.1| permease [Acinetobacter junii SH205]
gi|262310945|gb|EEY92032.1| permease [Acinetobacter junii SH205]
Length = 366
Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 41/281 (14%), Positives = 92/281 (32%), Gaps = 7/281 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L +++ L +I + + + A R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVTALLTLIIMGGQLIKIFGRAAQ-GRLDAGVLLSIIAYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL + + + + ++
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRNQLAKLLLPMTFVYLLVQSFLMFWG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
++SG + L+Q ++ I A + + +D
Sbjct: 121 SSSGIRAYESLMQTQAVRAGFDLVRPKEFI----SSGPYTIYAGSLSEDRKNLKDIFYYQ 176
Query: 184 -IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
++++K A A VV+ GR + + ++ E
Sbjct: 177 KAEREDKPDVMILAKEATRVEMANDTANVVDLVQGRRYEIYPNQPRYTQAEFQSYRLRLE 236
Query: 243 QFASRSF-YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
F + ++ +S S + ++ + I P
Sbjct: 237 NDKDIKFESDDVEALSMSKLWQKRDDSVVRSELGWRIFGPF 277
>gi|309784106|ref|ZP_07678748.1| conserved hypothetical protein [Shigella dysenteriae 1617]
gi|308928099|gb|EFP73564.1| conserved hypothetical protein [Shigella dysenteriae 1617]
Length = 335
Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 108/314 (34%), Gaps = 12/314 (3%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 70 AAIILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
I + ++D I K AD + +L+ +
Sbjct: 130 I----ESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTR 181
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVI 280
T L ++ FQ + ++ + ++ RA + + I +
Sbjct: 182 FEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITL 241
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 242 VFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWM 300
Query: 341 LIPVILTISLSILI 354
++ ++L+I++
Sbjct: 301 WTVNLIYLALAIVL 314
>gi|110638188|ref|YP_678397.1| permease [Cytophaga hutchinsonii ATCC 33406]
gi|110280869|gb|ABG59055.1| conserved hypothetical protein; possible permease [Cytophaga
hutchinsonii ATCC 33406]
Length = 483
Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/194 (12%), Positives = 67/194 (34%), Gaps = 8/194 (4%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
FF ++ T ++ + ++E+ + +Y + + + + + +P
Sbjct: 15 FFGPFILTVFVVTFIFLMQTILKYIDELVGKGLSYLDY--AELMMYFSMNI---LPVALP 69
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L+ +++ F NL + +EL ++ GIS+ +++ P + + + N +
Sbjct: 70 LAILLSSLMTFGNLGQFNELTAIKSSGISLIRVMVPIAIWVLGCTVGLYFFNNYVVPKAN 129
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
L+ + K D+ P + + I + + + +
Sbjct: 130 LKAFSLLYDLRQ--KKPSLDLKPGVFYNGIPGYS-IKIVQKFDNDSSIKGVIIYDHTQSR 186
Query: 189 KIIHRKDADLAIIY 202
AD +Y
Sbjct: 187 GNTDVIIADSGSMY 200
Score = 39.5 bits (91), Expect = 0.86, Method: Composition-based stats.
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 1/86 (1%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
E Y + + LI A + + I V I Y + +
Sbjct: 369 FEVTKYQKFTQAVACFVLFLIGAPLGA-IIKKGGLGIPVLICIIFFIFYYVFSITGEKWT 427
Query: 330 KSGILLPVAAALIPVILTISLSILIL 355
K G+ A + + + +
Sbjct: 428 KEGVYPADFAMWFGNGILFCVGLFFM 453
>gi|300728391|ref|ZP_07061753.1| permease, YjgP/YjgQ family [Prevotella bryantii B14]
gi|299774310|gb|EFI70940.1| permease, YjgP/YjgQ family [Prevotella bryantii B14]
Length = 631
Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/203 (16%), Positives = 72/203 (35%), Gaps = 16/203 (7%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAV------LAATR 58
L + K + L F I FV+ + + + +L I A+ +
Sbjct: 7 LDIFLAKQFG---LLFAGTFFICQFVLMMQFLWRYVDDLIGKGIPMTALAQFFWYMGLMM 63
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
VP Q +P L+ +++ NL +SEL +A GIS+ Q L +V + ++ + +
Sbjct: 64 VP----QALPLAILLSSLITLGNLGESSELTAIKAAGISLLQALRSLIVITCIIMMASFY 119
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
N + L+ K + + + + + I +K ++
Sbjct: 120 FENNLGPDANMKLSQLLISMKQKSPELEIPEGVFY---DGIPNSNIYVQKKDLKSGKLYG 176
Query: 179 FTSITIDKKNKIIHRKDADLAII 201
+ + + AD ++
Sbjct: 177 IMIYRMTQSYEDAAIILADSGMM 199
Score = 37.5 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 5/75 (6%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R + + + L + I A + R + V + + Y +
Sbjct: 368 RRHKIEMVNKFTVALSCLIFFFIGAPLGA-IIRKGGLGVPVIISVLVFIIYYILDNSGFR 426
Query: 328 FGKSGILLPVAAALI 342
+ GI A
Sbjct: 427 MAREGIW----AIWF 437
>gi|85374865|ref|YP_458927.1| permease [Erythrobacter litoralis HTCC2594]
gi|84787948|gb|ABC64130.1| predicted permease [Erythrobacter litoralis HTCC2594]
Length = 437
Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 53/361 (14%), Positives = 131/361 (36%), Gaps = 17/361 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY F+ + + + A L+ + + + + + + I + +P
Sbjct: 32 IDRYIFRLTIVPMMAVFVLAASLLLLDKMLRLFDFVA-VEGGPIGVVFKMLGALIPEYAS 90
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
IP L+ + F L +SEL + RA+G+ +LL + + +L V ++ I
Sbjct: 91 LAIPLGLLLGILFAFRKLATSSELDVLRAVGMGYGRLLRVPYIITAILVAVNVALVFYIQ 150
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L + + + + +++ + + ++ + +
Sbjct: 151 PISRYYYEQLEYELRSGALGASIKVGEFTTLAD---RMALRIEESEDNGRNLKGIFARVS 207
Query: 185 DKKNKIIHRKDADLAIIYNDK-------VKLKKVVEYQ--YGRIPIDKNSTTLNIPIKMD 235
+ K +++ A ++L Q + P + T ++PI +
Sbjct: 208 NDKGQVLS-ISAREGSFLATTDSSDTIILRLTDGTIVQDTGNQTPRVLSFTRHDLPIDLP 266
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR--AETQFYFLIVIPLMLVAMTLIAAS 293
++F ++ + Y + + +S R ++ F F +V +M+ + L+A S
Sbjct: 267 AIEQFRQRGDAEREYILPELLSIGWSDTESEAKRDASQASFNFRLVEVVMMWLLPLLALS 326
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+++ RS + V I + + + G + P+ A P +L +L +
Sbjct: 327 LAIPPKRS-TSALGVFVSIVMVVSYHKVNQYGEDVAALGRVDPIVALWGPFVLFAALILW 385
Query: 354 I 354
+
Sbjct: 386 M 386
>gi|323162060|gb|EFZ47932.1| hypothetical protein ECE128010_1825 [Escherichia coli E128010]
gi|332346340|gb|AEE59674.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 335
Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 108/314 (34%), Gaps = 12/314 (3%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 70 AAMILAVFTAIVAAINVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
I + ++D I K AD + +L+ +
Sbjct: 130 I----ESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTR 181
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVI 280
T L ++ FQ + ++ + ++ RA + + I +
Sbjct: 182 FEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITL 241
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 242 VFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWM 300
Query: 341 LIPVILTISLSILI 354
++ ++L+I++
Sbjct: 301 WTVNLIYLALAIVL 314
>gi|115525294|ref|YP_782205.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisA53]
gi|115519241|gb|ABJ07225.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
BisA53]
Length = 388
Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 51/362 (14%), Positives = 120/362 (33%), Gaps = 31/362 (8%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F+ L + L ++++ + M +I L + VP++I I
Sbjct: 7 YIFRTTLASFAVILASLTGVIWITQALRGIDLMTS-QGQTILTFLGLTSMAVPVLILVIA 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P ++ L SE+++ A G+S +L+ PF+ + ++ + + +A G
Sbjct: 66 PLALMIAVAHTLNRLATDSEIIVMNAAGLSPLRLMRPFMYAAAVVALLVGFIGAYVAPEG 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ + + + + + +Q++ I ++ P + + ID +
Sbjct: 126 LRRINNWDSEITADILANILQPG---RFAQLEQNLTIRVRERQPGGLL----VGVFIDDR 178
Query: 188 NKIIHR--KDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNI----PIKMDGF 237
R AD + + L+ ++ D K
Sbjct: 179 RDPKERVSIIADHGTVLKNADGSFLVLEDGTLQRFELGKRDPALVAFGRYAFDMSKFSKA 238
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL-----MLVAMTLIAA 292
+ + R +E+I N + + + ++ P+ + +
Sbjct: 239 RDVTYGIRERYLWELIWPQPGDPLVARLPN-QFRAEMHDRLMAPIYPFAFAALTFAFLGM 297
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+ SR+ VA I + F+L + P AAL ++L ++++
Sbjct: 298 PRTTRQSRN----FSVAGAIAAVFLLRLAGFACSIMTNTN---PWFAALQYLLLAGAIAL 350
Query: 353 LI 354
+
Sbjct: 351 GM 352
>gi|322379484|ref|ZP_08053850.1| permease [Helicobacter suis HS1]
gi|322380465|ref|ZP_08054664.1| putative permease [Helicobacter suis HS5]
gi|321147110|gb|EFX41811.1| putative permease [Helicobacter suis HS5]
gi|321148091|gb|EFX42625.1| permease [Helicobacter suis HS1]
Length = 355
Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 58/358 (16%), Positives = 118/358 (32%), Gaps = 23/358 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
LW + YY K L LL ID + + N + I
Sbjct: 3 LWVFVGSYYAKYCLIILLALEFFFLGIDSLQYAEKFPSAANL----ILLFFVYDGLYAIN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ ++ + R+++ +IG SI ++L P + + L + V +
Sbjct: 59 YTLPISLLLGLVLFYTAFIRSNQYTALLSIGYSIKEILKPMLWINGLCILIYVGLNATPF 118
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ +I +KDN + +++ + +I KI P ++ +
Sbjct: 119 VYMQEKAQSII--YKDNTNSISENLLV------KYNNDYIYFGKINPLLQNAQNVKIFML 170
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI--DKNSTTLNIPI-------KMD 235
K N++ A A L V + K + +P+ +
Sbjct: 171 -KDNQLNTFAQAPSASFEGKFWVLHSVTLSTLPTPLLLGKKGLSVQKLPLLKTLKGFRPK 229
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + S + + + + + Y I +P + ++ A +
Sbjct: 230 VLDTIYQNKPAVSITDAFRSLHVLYRQKA-DTKKIRGFLYVSIFLPFFVPLTAILIAYYT 288
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+R ++ I +L+ + M F SG+ LP L P I+ I +S
Sbjct: 289 PNLARYENLALLSLKFILLSLILWGLFFAMGKFSISGVFLPEVGVLAPFIILIGVSFY 346
>gi|301028100|ref|ZP_07191378.1| putative inner membrane protein [Escherichia coli MS 196-1]
gi|312965942|ref|ZP_07780168.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|299878817|gb|EFI87028.1| putative inner membrane protein [Escherichia coli MS 196-1]
gi|312289185|gb|EFR17079.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|313646462|gb|EFS10924.1| hypothetical protein SF2457T_5377 [Shigella flexneri 2a str. 2457T]
gi|323171707|gb|EFZ57353.1| hypothetical protein ECLT68_3916 [Escherichia coli LT-68]
gi|323176176|gb|EFZ61768.1| hypothetical protein ECOK1180_4866 [Escherichia coli 1180]
gi|323181995|gb|EFZ67406.1| hypothetical protein ECOK1357_4673 [Escherichia coli 1357]
gi|323189857|gb|EFZ75135.1| hypothetical protein ECRN5871_1644 [Escherichia coli RN587/1]
gi|327250207|gb|EGE61926.1| hypothetical protein ECSTEC7V_5011 [Escherichia coli STEC_7v]
gi|332083262|gb|EGI88493.1| hypothetical protein SB521682_5141 [Shigella boydii 5216-82]
gi|332083699|gb|EGI88917.1| hypothetical protein SD15574_5322 [Shigella dysenteriae 155-74]
gi|332087092|gb|EGI92226.1| hypothetical protein SB359474_4825 [Shigella boydii 3594-74]
gi|332748941|gb|EGJ79364.1| hypothetical protein SFK671_4980 [Shigella flexneri K-671]
gi|332749216|gb|EGJ79637.1| hypothetical protein SF434370_4579 [Shigella flexneri 4343-70]
gi|332749777|gb|EGJ80190.1| hypothetical protein SF274771_5047 [Shigella flexneri 2747-71]
gi|332763114|gb|EGJ93357.1| putative transmembrane possibly involved in transport conserved
inner membrane protein [Shigella flexneri 2930-71]
gi|333009259|gb|EGK28715.1| hypothetical protein SFK218_0006 [Shigella flexneri K-218]
gi|333011251|gb|EGK30665.1| hypothetical protein SFK272_0204 [Shigella flexneri K-272]
gi|333011932|gb|EGK31317.1| hypothetical protein SFK304_5276 [Shigella flexneri K-304]
gi|333012148|gb|EGK31530.1| hypothetical protein SFK227_5241 [Shigella flexneri K-227]
Length = 335
Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 108/314 (34%), Gaps = 12/314 (3%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 70 AAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
I + ++D I K AD + +L+ +
Sbjct: 130 I----ESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTR 181
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVI 280
T L ++ FQ + ++ + ++ RA + + I +
Sbjct: 182 FEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITL 241
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 242 VFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWM 300
Query: 341 LIPVILTISLSILI 354
++ ++L+I++
Sbjct: 301 WTVNLIYLALAIVL 314
>gi|75675869|ref|YP_318290.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
gi|74420739|gb|ABA04938.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
Length = 390
Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 48/373 (12%), Positives = 124/373 (33%), Gaps = 42/373 (11%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G + +Y F+ L + + L+ ++++ + M +I + + +P++
Sbjct: 2 GSIDKYIFRTTLASFVVVLVSLTGVIWITQALRGIDLMTS-QGQTILTFLGITSLAIPVL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I P ++ L SE+++ A G+S ++L PF+ ++++ + +
Sbjct: 61 VLIISPIALMIAVSHTLHKLATDSEIIVMNAAGLSPFRLFRPFLYATVVVALLVAFIAAY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A G + + + + + ++ I ++ P + I
Sbjct: 121 LAPDGMRRLKQWDAEITADVLANVLQPG---RFAQLDPNLTIRIRERQPGGQLA----GI 173
Query: 183 TIDKKNKIIHR--KDADLAI-----------IYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
ID + R AD + + L++ + + + +
Sbjct: 174 FIDDRRNSNERLSIIADHGTVMKNDQGSFLILEDG--HLERFETGKREPAMVAFDRYAFD 231
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL-----ML 284
+ + R +E+I + + + P+
Sbjct: 232 MSKFSNRGHDVVYGIRERYLWELIAPDEKDPLVQQL-RGQFRAELHDRFTAPIYPFAFAA 290
Query: 285 VAMTLIAASVSLEFSR--SNQPRIIVAYGI-FSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ + + + SR S I +G+ +GF L + + P+AA L
Sbjct: 291 LTFAFLGSPRTTRQSRNFSMGAAIAAVFGLRMAGFALSVMT----------VKSPMAALL 340
Query: 342 IPVILTISLSILI 354
++L ++ I +
Sbjct: 341 QYLLLFGAIGISL 353
>gi|229495721|ref|ZP_04389449.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
gi|229317295|gb|EEN83200.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
Length = 658
Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/196 (12%), Positives = 74/196 (37%), Gaps = 6/196 (3%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSISRGAVLAAT--RVPLIIQQ 65
+ Y ++ + L+ ++ + + L ++ ++ E+ + ++ + +
Sbjct: 9 MYTYIIQQFMPLLVMTFVICWFVVLMQMLWSRADEIVGRGLDTWVLIQLLFHAAVMALPT 68
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
P L+ +++ F L EL+ ++ G+ ++++++P V I +G+ + +N
Sbjct: 69 ATPLGILLASVMTFGGLGERLELLAMKSAGVPLYRIMSPLFVVGITIGLALFVYLNTAMM 128
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ +I + + + + P +F+ KK EN +
Sbjct: 129 DAQVKFFQIIFSAQQSRPDLEIPQGVFYNQI-PGYSLFV--KKKDHENRTLHELMIYDFS 185
Query: 186 KKNKIIHRKDADLAII 201
+ + AD +
Sbjct: 186 RGSSQPRIVLADSGKL 201
Score = 53.7 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 10/146 (6%), Positives = 39/146 (26%), Gaps = 6/146 (4%)
Query: 209 KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNY 268
+ Q + + ++ + + + E+ + ++ ++
Sbjct: 339 QGAKRQQITLDSLYRMASPEQLETALKNASEKLHNMT-----ELATFWDGAYQAEAYNFR 393
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
+ + P+ + I + R + + I + Y I T+ +
Sbjct: 394 SHSQERHRKFTFPVACIVFFFIGVPLGA-LIRKGGIGMPMVASILLFVVYYMIDTLGFNL 452
Query: 329 GKSGILLPVAAALIPVILTISLSILI 354
+G + + + +
Sbjct: 453 SYNGTWPTWLGMWFSTFILLPIGAFL 478
>gi|170766592|ref|ZP_02901045.1| putative permease [Escherichia albertii TW07627]
gi|170124030|gb|EDS92961.1| putative permease [Escherichia albertii TW07627]
Length = 335
Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 107/314 (34%), Gaps = 12/314 (3%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 70 AAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
I + ++D I K AD + +L+ +
Sbjct: 130 I----ESVDGSNFKDVFLAQIRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTR 181
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVI 280
T L ++ FQ + ++ + ++ RA + + I +
Sbjct: 182 FEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTTRARAELNWRITL 241
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 242 IFNVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWM 300
Query: 341 LIPVILTISLSILI 354
++ + L+I++
Sbjct: 301 WTVNLIYLVLAIVL 314
>gi|258544323|ref|ZP_05704557.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
gi|258520403|gb|EEV89262.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
Length = 352
Score = 69.9 bits (170), Expect = 7e-10, Method: Composition-based stats.
Identities = 41/324 (12%), Positives = 94/324 (29%), Gaps = 22/324 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL+RY + L L L + ++ L+ N ++S +L +
Sbjct: 2 PILYRYLIRETLAVFLATNLILLAILLSFRLS-TLLAAAAAGNMALSAVWMLIGLQAVRF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++P ++ ++ L R E+ + A GI+ + +I +G+ + +
Sbjct: 61 LVILMPLAFVLAAVMTLGRLYRDHEISAALACGIAPRHQTRALLACAIPIGLLLLTLSMS 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + L QQ + + ++ + + I E DF I
Sbjct: 121 VLPRVYRGQEALRQQAQQEAGMILFTPNTYRRLDDG---TIVHTGSI--EGGQLRDF-FI 174
Query: 183 TIDKKNKIIHRKDADLAIIYNDK----VKLKKVVE--YQYGRIPIDKNSTTLNIPIKMDG 236
D+ + A + D+ + L + P T
Sbjct: 175 ARDEPDGGHSLILAANGEMQGDEQQRHLLLHDGRRLAWNADHDPAHTTLFTYQHADLRLP 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + S + + +++ P + + + +A +
Sbjct: 235 GANTLAASSDNRLRNLPT-------SELGTSPEHLSEWQSR-SNPAVALFIYALALPLLA 286
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYT 320
+ F F LY
Sbjct: 287 RSQPRQGRYQKIVPA-FIAFALYI 309
>gi|329890121|ref|ZP_08268464.1| hypothetical protein BDIM_18180 [Brevundimonas diminuta ATCC 11568]
gi|328845422|gb|EGF94986.1| hypothetical protein BDIM_18180 [Brevundimonas diminuta ATCC 11568]
Length = 342
Score = 69.9 bits (170), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 6/158 (3%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
S+ L +P +I I+P V ++ L R EL + A G+S W L+ P
Sbjct: 8 GQSVWVMVKLTLLALPQLIAVILPIGLFVGALIALTRLQREQELTAAYAAGVSRWALIRP 67
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
+ ++++ + ++LV + ++ G + + + ++Q P
Sbjct: 68 ALQIALIVTVISLLVNVFVQPWAQREGRRQAFAIRTDLAALLVEEGRFVQ--GPDGLTV- 124
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY 202
+ K + DA+ A
Sbjct: 125 ---YVQQIEQNGLMKNLFVYLDNGKTVTTWDAETARFG 159
>gi|154253775|ref|YP_001414599.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
DS-1]
gi|154157725|gb|ABS64942.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
DS-1]
Length = 388
Score = 69.5 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 56/142 (39%), Gaps = 5/142 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGEL--PNYSISRGAVLAATR 58
M L RY + +T F++ +++L +I L + + L ++ L
Sbjct: 1 MLKSLSRYL---FFQTLGPFVVASVVLSGIIWLTQALRMLDVLITQGQTLLTFFELTVLA 57
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P + ++P + L SE+V+ A G+S W + P + ++ + +
Sbjct: 58 LPSTLMIVLPISLFCAVLYSLHKLISDSEIVVMFAAGVSRWVVALPLLAIAMGTSVIILA 117
Query: 119 VINPIATSGEKIGIDLIQQWKD 140
IA +G + + + +
Sbjct: 118 FSIYIAPAGMRELKSRLVEIRS 139
>gi|333010222|gb|EGK29655.1| hypothetical protein SFVA6_0010 [Shigella flexneri VA-6]
Length = 335
Score = 69.5 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 108/314 (34%), Gaps = 12/314 (3%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 70 AAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
I + ++D I K AD + +L+ +
Sbjct: 130 I----ESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTR 181
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVI 280
T L ++ FQ + ++ + ++ RA + + I +
Sbjct: 182 FEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITL 241
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 242 VFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWM 300
Query: 341 LIPVILTISLSILI 354
++ ++L+I++
Sbjct: 301 WTVNLIYLALAIVL 314
>gi|114704779|ref|ZP_01437687.1| hypothetical protein FP2506_07581 [Fulvimarina pelagi HTCC2506]
gi|114539564|gb|EAU42684.1| hypothetical protein FP2506_07581 [Fulvimarina pelagi HTCC2506]
Length = 398
Score = 69.5 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY F+ L +++ L+ ++V+++ + + + +A +P +
Sbjct: 3 LLERYIFRRALISSVGSLVSLALIVWIVQALSRIDIVKTSASA-AGNILWIALMLLPDLA 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++PF L+ I V LN SE + A G S+ +L P + + GI + V + I
Sbjct: 62 AGVVPFAILIGAIQVLNGLNADSERAVIAASGASMRVILRPIIYLGLAGGILVLTVAHGI 121
Query: 124 ATSGEKIGIDLIQQW 138
+ I+
Sbjct: 122 GPLASSAFYNGIRSI 136
>gi|312973921|ref|ZP_07788092.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|310331455|gb|EFP98711.1| conserved hypothetical protein [Escherichia coli 1827-70]
Length = 335
Score = 69.5 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 108/314 (34%), Gaps = 12/314 (3%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 70 AAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
I + ++D I K AD + +L+ +
Sbjct: 130 I----ESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTR 181
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVI 280
T L ++ FQ + ++ + ++ RA + + I +
Sbjct: 182 FEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITL 241
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 242 VFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWM 300
Query: 341 LIPVILTISLSILI 354
++ ++L+I++
Sbjct: 301 WTVNLIYLALAIVL 314
>gi|86749600|ref|YP_486096.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
gi|86572628|gb|ABD07185.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
Length = 388
Score = 69.5 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 48/338 (14%), Positives = 107/338 (31%), Gaps = 25/338 (7%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G + Y F+ L + + ++++ + M +I L VP++
Sbjct: 2 GSIDSYIFRTTLTSFAVVMASLTGVIWITQALRGIDLMTS-QGQTIVTFLGLTGLAVPVL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I I P ++ L SE+++ A G+S +L PFV +I + L+ +
Sbjct: 61 ILVIAPIALMIAVAHTLNRLATDSEIIVMNAAGLSPLRLFRPFVYATIFVAALVTLIGSY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA G + + + + + +Q++ I ++ + +
Sbjct: 121 IAPDGLRRIARWDAEITADVLANVLQPG---RFAQLEQNLTIRVRERQAGGLL----VGV 173
Query: 183 TIDKKNKIIHR--KDADLAII----YNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMD 235
ID + R AD + + L+ +E G M
Sbjct: 174 FIDDRRDPADRVSIIADHGTVLKNKDGSFLVLEDGHLERFQGGKQEPTLVAFSRYAFDMS 233
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFH--NYRAETQFYFLIVIPL-----MLVAMT 288
F + + + + + + K + + ++ + ++ P+ V
Sbjct: 234 KFSRARDVAYGIREHYLWELIWPDPKDPLLAQLPTQFRSEMHDRLLAPIYPFFFAAVTFA 293
Query: 289 LIAASVSLEFSRSNQPRIIVAYGI---FSGFMLYTIIT 323
+ + SR+ V +GF L +
Sbjct: 294 FLGMPRTTRQSRNFSMIGAVLCAFVVRLAGFALSVVAN 331
>gi|167470530|ref|ZP_02335234.1| putative permease [Yersinia pestis FV-1]
Length = 337
Score = 69.5 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 49/348 (14%), Positives = 112/348 (32%), Gaps = 25/348 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNVVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ ++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMNACGMGKKSLIMAALILALFTSGLAAINTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K ++ K N + ++ +FIG +
Sbjct: 121 GPWSSKHQDVVLNDAKANPSLAALGGGQFKSSNDGNSALFIG----NVAGKEFNRVFLAQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPID---KNSTTLNIPIKM 234
+ AD + + V L K Y+ + D + I
Sbjct: 177 LRPNGNQRPSVVVADSGHMSELPDGSQMVILNKGTRYEGTALLRDFRITDFVDYQAVIGH 236
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
Q+ S S E+ + ++ +F++ + + + +V M L+ +
Sbjct: 237 KQVQQSSNGADQMSMKELWRSQEPDARA----------EFHWRLTLIVSVVIMALLVVPL 286
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
S+ R + + + + + + + + ++S G L P+
Sbjct: 287 SVVNPRQGRV-LSMLPAMLLYLIFFLLQSSLRSKAGKGQLDPLVWMWA 333
>gi|260363481|ref|ZP_05776317.1| conserved inner membrane protein [Vibrio parahaemolyticus K5030]
gi|308112551|gb|EFO50091.1| conserved inner membrane protein [Vibrio parahaemolyticus K5030]
Length = 348
Score = 69.5 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 34/345 (9%), Positives = 102/345 (29%), Gaps = 19/345 (5%)
Query: 21 LLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFF 80
++ + + + + +P + ++P + ++ F
Sbjct: 1 FFVLFLVFVSQKFISVLADASD-GDIPAGLIFSIVGLNMPAMGLLMLPLSLYIGILITFG 59
Query: 81 NLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKD 140
L SE+V+ A GI L+ + +++ ++ + L +Q
Sbjct: 60 RLYAESEIVVMNATGIGNKFLVQAALYLALITSGVAAFNALWLSPWSQDRVEHLYEQVAA 119
Query: 141 NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRK----DA 196
+ P + ++ + + ++ ++
Sbjct: 120 ENSVDLLKKGQF--QGTPDGSSVVFID--DIKDSTLSNVFVAQMRPRDSVLPSVMFSSSG 175
Query: 197 DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKM 256
++ + + ++V+ Q G + + K D ++ Q + +
Sbjct: 176 EVKELSDG----RQVITMQEGTRYEGVPTRVEYMITKFDEYEGVIGQREVKQKGRDWEAY 231
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLV-AMTLIAASVSLEFSRSNQPRIIVAYGIFSG 315
++ A+ + + I + + + +T++ +S R + + I
Sbjct: 232 PTADLIGHPDPE-AQAELQWRISL-FVCIPLLTMLVIPLSAVNPRQGRFAKM-GPAILIY 288
Query: 316 FMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKED 360
+ I+ KS + G + I + L + I+ D
Sbjct: 289 LAYFLAISATKSALEDGAIPAAIGMW--PINAMLLIVAIMANMMD 331
>gi|289805150|ref|ZP_06535779.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 83
Score = 69.5 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
PL + M L+A S RS + V GI GF+ Y + I + P+ A
Sbjct: 5 PLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGA 64
Query: 341 LIPVILTISLSILILLQK 358
L+P +S+ ++L+K
Sbjct: 65 LLPSASFFLISLWLMLRK 82
>gi|293393093|ref|ZP_06637408.1| inner membrane protein YjgP [Serratia odorifera DSM 4582]
gi|291424239|gb|EFE97453.1| inner membrane protein YjgP [Serratia odorifera DSM 4582]
Length = 393
Score = 69.1 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/365 (13%), Positives = 125/365 (34%), Gaps = 35/365 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F +L + + + + L A VP +
Sbjct: 31 IIIRYLVRETLKSQIAILFILLLIFFCQNLVRVLGDAVD-GDVPTNLVLSLLALGVPKMA 89
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ +V ++L + + I
Sbjct: 90 QLILPLSLFLGLLMTLGRLYTESEITVMHACGLGKRTLIIAAMVLALLTSLVAAANVFWI 149
Query: 124 ATSGEKIGIDLIQQWKDNGD---------KQKSDIIPWMQISNPQQDIF--IGAKKILPE 172
++I + K N + D + + N + + F + ++ P
Sbjct: 150 GPWASSHQDEVIAEAKANPSIAGLAEGQFQPSQDGNAVLFVGNVKGNTFNNVFLAQLRPN 209
Query: 173 NHIWEDFTSITIDKKNKII---HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
+ + N++ D + L+ + +
Sbjct: 210 GNQRPSVVVAEHGQINQMKDGSQVVTLDKGTRFEGTALLRDFRITDFSDYKAVVGHRAVA 269
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ +EQ + + ++ + A +F++ + + + +V M L
Sbjct: 270 MDNTQ------AEQMSMLTLWQ-------------SDDQEARAEFHWRLTLVVSVVLMAL 310
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+ +S+ R + ++ + ++ + GK G L P+ + + +
Sbjct: 311 LVVPLSVVNPRQGRVLSMLPAILLYLIFFLLQTSLRSNAGK-GKLDPMLWIWLVNAVYFA 369
Query: 350 LSILI 354
+++ +
Sbjct: 370 IALAL 374
>gi|300778309|ref|ZP_07088167.1| permease YjgP/YjgQ family protein [Chryseobacterium gleum ATCC
35910]
gi|300503819|gb|EFK34959.1| permease YjgP/YjgQ family protein [Chryseobacterium gleum ATCC
35910]
Length = 485
Score = 69.1 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 3/136 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFV-IDLNEIQNQMGELPNYSISRGAVLAATRV 59
M IL RY K + + + V I ++ MG+ S + L
Sbjct: 1 MLKILDRYIIKTFFGPFFFIFSVLFFIFIVNIIWVQLGQFMGK--GLSYWQILKLLFYLG 58
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
+I ++P L+ +I+ F EL +A GI + +++ P + S L I
Sbjct: 59 VNVISMVLPLTILLASIMSFGEFGERYELAAMKAAGIPLTRVMTPLLGISTALAIMLFFF 118
Query: 120 INPIATSGEKIGIDLI 135
N I +K +++
Sbjct: 119 SNNIIPDFQKKAKNML 134
Score = 43.7 bits (102), Expect = 0.051, Method: Composition-based stats.
Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 258 FSNKSNIFHNYRA---ETQFYFLI-VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
S K+ N + + I + + LI +S+ R + V I
Sbjct: 349 ESKKNEYSSNVKYFSKVVIYQQRIVAYSVTCIIFFLIGSSLG-SIIRKGGMGLPVIIAIV 407
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y + +++ SG + P AA +P ++ + + +
Sbjct: 408 IFIIFYVMNVGVENMSWSGKMNPYLAAWLPNLILLPFGVWM 448
>gi|300114327|ref|YP_003760902.1| permease YjgP/YjgQ family protein [Nitrosococcus watsonii C-113]
gi|299540264|gb|ADJ28581.1| permease YjgP/YjgQ family protein [Nitrosococcus watsonii C-113]
Length = 383
Score = 69.1 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/353 (12%), Positives = 107/353 (30%), Gaps = 33/353 (9%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY K L +++ I +Q + L+
Sbjct: 4 FLIVDRYILKELSLNATAITLVLLLIFGGIRFIRFLSQATK-GKVPGEAILALSGYEAIG 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++P + + ++ + +E++ A G+S LL + ++L I +
Sbjct: 63 ALVLLLPLASFLAVLLALGRMGADNEVIALFACGVSRRHLLRVVLTFGLVLAIGVGSISL 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + G L QQ + + + A+ + + ++
Sbjct: 123 YLGPAASAEGYRLKQQALLAAETSGLVAGNFK--ESQHGQRVFYAESLTEDGLGMKNVFI 180
Query: 182 ITIDKKNKIIHRKDADLAII------YNDKVKLKKVVEYQYGRIPIDKNSTTLN---IPI 232
+ K + R A + + + L+ Y + I +
Sbjct: 181 QVWEPTQKTLFR--AATGHLQTDEGTGDKHLILEDGYRYDLMGEEVGIRIFRFERHGILV 238
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K G Q+F + + + + AE Q+ I +P+ + + ++A
Sbjct: 239 KKGGMQEFRIRHQTLPTLTLWEM--------GAPKDIAEIQW--RISMPITTLLLVMLAV 288
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS----GILLPVAAAL 341
++ R + G+ ++Y I + M ++ ++
Sbjct: 289 PLARSGPRQGRYA-----GLLPAVLVYVIYSNMLGIARNWVEHEVIPAFLGLW 336
>gi|300718281|ref|YP_003743084.1| permease [Erwinia billingiae Eb661]
gi|299064117|emb|CAX61237.1| Putative permease [Erwinia billingiae Eb661]
Length = 356
Score = 69.1 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/359 (13%), Positives = 113/359 (31%), Gaps = 23/359 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY ++ + ++G ++++F + ++ + +V + +
Sbjct: 3 LIERYITVE-IRRLVMVIVGFLVVMFASYSAQRYLTDAANGTLALQVVFDVVCYKVLIAL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ ++P V V L SE+ A G S +L + +I L + L+
Sbjct: 62 EMLLPVGLYVATAVALGQLYTDSEITAIFAAGASPVRLYKAVLFLAIPLAVVVTLLSLYG 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
L QQ S + N + + A +I P +H D +
Sbjct: 122 RPWAYGNIYRLEQQ--SQSVLDVSHLQANKFNVNGSGRMVM-ASRIDPASHQLTDALIYS 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
KN ++R V + + + L+ D Q +
Sbjct: 179 RSGKNTNLYRAH---------SVVVTDPSPATPSVNLRNGTAYVLDREGAQDNMQHYHSL 229
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRA------ETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + I+ KS + + + + L + M L+A +S
Sbjct: 230 --NIALKPFIESQEVRRKSAPVADLWCSSDPADKAELQWRESRGLSTLLMVLLAIPLSRT 287
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + ++ + + Y + ++ +G L + + ++ + + L
Sbjct: 288 KPRQGRYATLLPLTLLFTAIFYG-GNVCRTLVANGSLPAIPGVWLVPLV-MLTGLAFCL 344
>gi|307721571|ref|YP_003892711.1| permease YjgP/YjgQ family protein [Sulfurimonas autotrophica DSM
16294]
gi|306979664|gb|ADN09699.1| permease YjgP/YjgQ family protein [Sulfurimonas autotrophica DSM
16294]
Length = 358
Score = 69.1 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 51/360 (14%), Positives = 118/360 (32%), Gaps = 27/360 (7%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
++Y +Y+K L L ++ V D EL S + + + I
Sbjct: 4 FKYISLHYIKYFLIILTALVLFVVGFDY---MGSAEELSKSSANLILIYLVYKSFSAIDI 60
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
++P + I L R++ LV ++G S +L PFV S + I + +
Sbjct: 61 LLPVALVFAMISTKIYLIRSNALVSFFSLGYSRVDVLRPFVFVSTAVIILFIALHAW--- 117
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
S + + K N + +I K+LP ++ ++
Sbjct: 118 SNFARSEEFSRNIKKNAQYLSPTRDLFFAYKGK----YIYFSKLLPLQESAKNIRVFSV- 172
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLN-----------IPIK 233
+ + A A ++ +K+ + + + + T+ P
Sbjct: 173 ENESLKEVVVAKSARYIDNYWFIKRADIITKPDDLSLVSPGITVTKAKDLRILEGFRPKM 232
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+D + F + + I+ + N + + Y + + P + + +I
Sbjct: 233 LDQVYEGKVNFTIKDAVDAIRLLDKQN----INTDNIKAALYKIFIYPFFVPCLIVIIFF 288
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + I + + + I+ + + ++ ++PV++ L+ L
Sbjct: 289 FVPMSVRFLNVSLFTFGAILATLLTWGILFFLIKLANNKVISSEIGIIVPVVILAVLAFL 348
>gi|328675790|gb|AEB28465.1| Permease YjgP/YjgQ family protein [Francisella cf. novicida 3523]
Length = 360
Score = 69.1 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 57/364 (15%), Positives = 117/364 (32%), Gaps = 34/364 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + + I A +P +
Sbjct: 2 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYS-QGLGIDSIAKFVILTIPENV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL----LNPFVVGSILLGIFTVLV 119
+ P + I+ F +E+ ++ A GI+ Q+ L P V +I + + TV+
Sbjct: 61 SLVAPIAIFLAIIICFGKYFANNEMFVTLAGGITWMQIVKNTLKPVVALTI-ITLITVMY 119
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+NP++ I + II P I + D
Sbjct: 120 LNPLSKQTLDIYRASLSAKALLSSITDKKII-----KAPDGKII---YISNKSGNTLSDV 171
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDK-----------VKLKKVVEYQYGRIPIDKNSTTL 228
++ A A I +DK + K +Y K T+
Sbjct: 172 FLYQNTPQDGEYKVMTAPTAKIVSDKTAAYIDFMDVNIYTKNSQNSEYSHDNAKKAIYTI 231
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
D ++ + E +F++K N + +F+ I + ++ +
Sbjct: 232 FDNSDRDYNHDRVDRLYMHTLIE-----NFNDKDNG---TAFKAEFFGRINNAISVIVSS 283
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+A ++ R N+ + + + + + +G + +P I I
Sbjct: 284 LLALALCRLRPRQNKYAK-LLPSVVVLAIYLCTNMFINTLMTTGSMPVWIGFWLPHIFFI 342
Query: 349 SLSI 352
++
Sbjct: 343 IFAV 346
>gi|323157530|gb|EFZ43639.1| hypothetical protein ECEPECA14_0587 [Escherichia coli EPECa14]
Length = 335
Score = 69.1 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 108/314 (34%), Gaps = 12/314 (3%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 10 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 69
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 70 AAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 129
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
I + ++D I K AD + +L+ +
Sbjct: 130 I----ESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTR 181
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVI 280
T L ++ FQ + ++ + ++ RA + + I +
Sbjct: 182 FEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMCTLWNTDTDRARAELNWRITL 241
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 242 VFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWM 300
Query: 341 LIPVILTISLSILI 354
++ ++L+I++
Sbjct: 301 WTVNLIYLALAIVL 314
>gi|92117863|ref|YP_577592.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
gi|91800757|gb|ABE63132.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
Length = 389
Score = 69.1 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/191 (14%), Positives = 72/191 (37%), Gaps = 8/191 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G + +Y F+ L + + L+ ++++ + M +I + + +P++
Sbjct: 2 GSIDKYIFRTTLASFVVVLVSLTGVIWITQALRGIDLMTS-QGQTILTFLGITSLAIPVL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I P ++ L SE+++ A G+S ++L PF+ ++++ + +
Sbjct: 61 VLIISPIALMIAISHTLHKLATDSEIIVMNAAGLSPFRLFRPFIYATVVVALLVAFIAAY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A G + + + + + ++ I ++ P + I
Sbjct: 121 LAPDGMRRLKRWDAEITADVLANVLQPG---RFAQLDPNLTIRVRERQPGGLL----VGI 173
Query: 183 TIDKKNKIIHR 193
ID + R
Sbjct: 174 FIDDRRNPNER 184
>gi|317494176|ref|ZP_07952592.1| inner membrane protein yjgP [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316917949|gb|EFV39292.1| inner membrane protein yjgP [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 366
Score = 68.7 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/369 (12%), Positives = 118/369 (31%), Gaps = 43/369 (11%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ + L +++ F + I + + L VP +
Sbjct: 2 IIIRYLVRETFKSQIAILFILLLIFFCQKMVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+V+ A G+ L+ ++ + + G F ++ +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEIVVMHACGLGKGVLIKTAMILAFITGAFALVNAFWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGA-----------KKILPE 172
+ +++ + K N + + +F+G ++ P
Sbjct: 121 SPWSSFHSDEVMAEAKANPGLASMVEGQFQPSKDGNYVLFVGDVKGKKFENVFLAQLRPN 180
Query: 173 NHIWEDFTSITIDKKNKIIHRKDA------DLAIIYNDKVKLKKVVEYQY-GRIPIDKNS 225
+ R D D Y L+ + + +
Sbjct: 181 GTQRPSVVV---ADTGHMEGRPDGSQQVVLDTGTRYEGTALLRDFRITDFVNYEAVIGHQ 237
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+ P ++Q ++ ++ + +F++ I + +
Sbjct: 238 AVVLNPSN-------ADQAPMQALWD-------------SNEKDFRAEFHWRITLVFSVF 277
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVI 345
M L+ +S+ R + + + + + + + + ++S G + P +
Sbjct: 278 VMALMVVPLSVVNPRQGRV-LSMLPAMLLYLIFFLLQSSLRSNAAKGKIDPFIWVWVVNG 336
Query: 346 LTISLSILI 354
+ L+I +
Sbjct: 337 FYLLLAIAL 345
>gi|171463871|ref|YP_001797984.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171193409|gb|ACB44370.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 371
Score = 68.7 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/355 (13%), Positives = 119/355 (33%), Gaps = 15/355 (4%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
+ L T + ++ + V L + VL A + ++
Sbjct: 7 LRRELSFTTGGVFLVLVTIMVTTLVIRILGYAANGAVNPEDTLVLIALATLGYLAVLLTV 66
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
V ++V + SE+++ A G+S+ L+ P + + L I L+ + +
Sbjct: 67 SLFVATLIVLVRWYKDSEMIVWLASGLSVTNLIRPILQFATPLIIVIALLALFVWPWANR 126
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
+ Q+ + D + + + ++ FI +++ + ++ + K +
Sbjct: 127 ESTLISQRSQQRDDVSVVSAGQFKESAKAERVFFI--EELDVDKSKVKNI-FVANSKNGR 183
Query: 190 IIHRKDADLAIIYN-----DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ I N + L Y+ P + L +
Sbjct: 184 LSIAVS-STGYIQNSEGGEKSIVLHNGRRYEGQ--PTQPDFRILEFNEYSTKIRSKDALA 240
Query: 245 ASRSFYE-IIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+ E I ++ + RAE + I +PLM + + LIA ++ R
Sbjct: 241 PAPRDREKTITELLNDPNPTSVNPNRAELLW--RIGLPLMALGLVLIAIPLAYVNPRLGN 298
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ Y + + ++ + ++F G + A +L + ++ +++ +
Sbjct: 299 YTAM-FYAVLIYLIYSNLLNLTQNFVSQGRISVFVAIWPIHLLALLITTVLIRNR 352
>gi|254453241|ref|ZP_05066678.1| permease YjgP/YjgQ family protein [Octadecabacter antarcticus 238]
gi|198267647|gb|EDY91917.1| permease YjgP/YjgQ family protein [Octadecabacter antarcticus 238]
Length = 372
Score = 68.7 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/361 (13%), Positives = 114/361 (31%), Gaps = 35/361 (9%)
Query: 18 LYFLLGAMILVFVIDL-NEIQNQMGEL---PNYSISRGAVLAATRVPLIIQQIIPFITLV 73
L G L+ V+ ++ + S L + +P +I+ ++P V
Sbjct: 5 LLVFFGFFSLILVLIYWINRAVRLFDRLIADGQSAWVFLELTSLSLPSLIRIVLPLSAFV 64
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
+ V ++ SEL + +A G S ++L P +V +++ + ++ N + + I
Sbjct: 65 AAVYVTNRMSSDSELTVVQATGYSPFRLARPVIVFGVIVAVLMSILTNILVPLSTERLIT 124
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
+ + ++ P D+ +++ P + + I I + R
Sbjct: 125 RQAEIAQTMTARLLTPGEFL---TPTDDVTFYIRELPPGGEMLD----IFISESTSPTQR 177
Query: 194 K--DADLAII----YNDKVKLKKVVEYQYG-----RIPIDKNSTTLNIPIKMDGFQKFSE 242
A A + ++ + + + N+ M+
Sbjct: 178 TTYTASRAYLVRTENGPQLVMVDGLTQTLNLETSRLLTTRFEDFVYNVSALMNDDPVRKT 237
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA--ASVSLEFSR 300
S +++ + + + + + + I + L+ A V FSR
Sbjct: 238 SVNGLSTMALLRPSAETIADTNQTGDQLKLRGHDRIAQAALGFVAGLVGFSALVVGGFSR 297
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI----LILL 356
+ + + +L + S + AAL P + + +LL
Sbjct: 298 FG-LWRNIIFAVGLVILLKLLEGTGTSIATTN------AALWPFVYLAGIGGVVISAMLL 350
Query: 357 Q 357
Sbjct: 351 H 351
>gi|89054305|ref|YP_509756.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
gi|88863854|gb|ABD54731.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
Length = 371
Score = 68.7 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/333 (14%), Positives = 123/333 (36%), Gaps = 19/333 (5%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY + + +F L + + +V + +++ +I +A +P I+Q
Sbjct: 5 DRYILRQLVALFGFFSLVLVSVYWVNQAARLFDRLIA-DGQNIGVFLEFSALTLPWIVQL 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
I+P V + +F + SELV+ + G+S +LL P V LL I +++N +A
Sbjct: 64 ILPVSAFVATLYIFNRMISESELVVLQTAGLSALRLLRPVFVFGCLLAILLAVLVNILAP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP----ENHIWEDFT- 180
+ + +D+ + ++ +P + + ++I + +D +
Sbjct: 124 TARGQFTQRQAEVQDDLTGRFLRAGEFI---HPAAGLTVYIREISELGEFRDLFLQDAST 180
Query: 181 ---SITIDKKNKIIHRKD-ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+T ++ R D ++++ + + + I + ++
Sbjct: 181 PGVEVTYTANTALLVRSDTGPRLVMFDGVAQTLDLDTGRLSTISFSDFTYSVGTLGGTGA 240
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
Q + + ++++ + + H + + + L ++ + LIAA+ +
Sbjct: 241 RQIDVRELPTPLLLRANQQIAGALNLPLSHLV---FEGHDRLAQSLFVLFVPLIAAASLM 297
Query: 297 --EFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
FSR + + + + ++
Sbjct: 298 LGSFSRFG-VWKQILIAVALVLPMQIVRNASEA 329
>gi|238755186|ref|ZP_04616532.1| Inner membrane protein yjgP [Yersinia ruckeri ATCC 29473]
gi|238706633|gb|EEP99004.1| Inner membrane protein yjgP [Yersinia ruckeri ATCC 29473]
Length = 364
Score = 68.7 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/359 (13%), Positives = 129/359 (35%), Gaps = 23/359 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L + + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRVLGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+ L+ ++ S+L + +
Sbjct: 61 QLILPLSLFLGLLMTYGKLYTESEITVMHACGLGKRPLIIAALILSMLTSGLAAVNAIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGA------KKILPENHIWE 177
K +++ + N + + +F+G+ +++
Sbjct: 121 GPWSSKHQDEVLNDARANPSLAALVEGQFQSSQDGNAVLFVGSVSGKEFQRVFLAQLRPS 180
Query: 178 DFT--SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
D S+ + K + R D ++ N + + + RI + +
Sbjct: 181 DNQRPSVVVADKGHMAERPDGSQVVLLNQGTRYEGTALLRDFRITDFTDYQAVIGHQVAQ 240
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
EQ + + + ++ + +F++ + + + +V M ++ +S
Sbjct: 241 QDNNIVEQMSMAALWHSSEQDA-------------RAEFHWRLTLIVSVVIMAMLVVPLS 287
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ R + + + + + + + + ++S G G L P+ + ++L++++
Sbjct: 288 VVNPRQGRV-LSMLPAMLLYLIFFLLQSSLRSNGAKGKLDPMVWIWVVNGAYLALALVL 345
>gi|149178410|ref|ZP_01857000.1| hypothetical protein PM8797T_01869 [Planctomyces maris DSM 8797]
gi|148842727|gb|EDL57100.1| hypothetical protein PM8797T_01869 [Planctomyces maris DSM 8797]
Length = 392
Score = 68.7 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 54/400 (13%), Positives = 123/400 (30%), Gaps = 64/400 (16%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR--VPL 61
+L RY L+ + +L+ + + + + VL VP
Sbjct: 3 LLQRYVLFELLRVFTLMITVLTVLLVFV------GAFQQATSQGLGVILVLKILPFIVPS 56
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ IP L+ VV+ + E+ ++A GI++ LL P + L + ++++ +
Sbjct: 57 MLPFTIPATLLLTVCVVYGRIAGDQEITAAKAAGINVLSLLWPSFILGGFLSLGSLILSD 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I EK + I + +K + I + + N T
Sbjct: 117 QIIPWAEKNIENTIACELETIFLEKLRSQNQIHDPTSGISITVMGVR----NKTLLVPTF 172
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP--------IDKNSTTLNIPIK 233
K +H A+ A + D + ++ G I ++K++ +P +
Sbjct: 173 RYSPPNKKPVH-LQAEEATLEFDLTNQQVILHISKGHIDFPGKPRFFVEKDTFPFPLPSQ 231
Query: 234 -----------------MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNY-------- 268
+ + +F + E+ ++ + +
Sbjct: 232 TTMAKPRHMSVKSIKSELVDLSEKKNEFEFQRDIEVAMLLALGDFEHFQSPEVNTDLPQN 291
Query: 269 --------RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM--- 317
+ +T + L+ S+ +R F F+
Sbjct: 292 QFQEKRQNKLKTALSSRFALSCSCFFFVLVGCPFSIAQARRQ-----FLTSFFLVFLPIL 346
Query: 318 --LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
Y I+ + + K G + P + + ++I +L
Sbjct: 347 LFYYPIVLLAINLAKQGKIEPTWSLWAGNAGLLIVAIHML 386
>gi|167949851|ref|ZP_02536925.1| permease YjgP/YjgQ [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 136
Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 1/112 (0%)
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
Q +++ ++F + N + E F+ +V+PL+ + M ++ RS
Sbjct: 2 QPHMLPAWDLWAYVAFLKQ-NGLSAAQYEVAFWSKLVVPLVTLVMLFLSIPFVFGPLRSV 60
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
V G G + + + G + A P +L + ++
Sbjct: 61 GIGQRVFTGAVVGTLFFMFNRVFTYLGVVYEFNALFTAAFPTLLFLLRGAVV 112
>gi|297518682|ref|ZP_06937068.1| hypothetical protein EcolOP_13658 [Escherichia coli OP50]
Length = 80
Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 35/79 (44%)
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
PL + M L+A S RS + V GI GF+ Y + I + P+
Sbjct: 1 QPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIG 60
Query: 340 ALIPVILTISLSILILLQK 358
AL+P +S+ +L++K
Sbjct: 61 ALLPSASFFLISLWLLMRK 79
>gi|91977434|ref|YP_570093.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
gi|91683890|gb|ABE40192.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
Length = 388
Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/337 (14%), Positives = 109/337 (32%), Gaps = 23/337 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G + Y F+ L + + ++++ + M +I L VP++
Sbjct: 2 GAIDSYIFRTTLTSFAVVMASLTGVIWITQALRGIDLMTS-QGQTIVTFLGLTGLAVPVL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I I P ++ L SE+++ A G+S +L PFV +I + + L+
Sbjct: 61 ILVIAPIALMIAVAHTLNRLATDSEIIVMNAAGLSPIRLFRPFVYATIAVAVLVTLIGAY 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
IA G + + + + + +Q++ I ++ + F
Sbjct: 121 IAPDGLRRIARWDSEITADVLANVLQPG---RFAQLEQNLTIRVRERQAGGLLVGVFIDD 177
Query: 183 TIDKKNKIIHRKDADLAII----YNDKVKLKKV--VEYQYGRIPIDKNSTTLNIPIKMDG 236
D +++ AD + + L+ +Q G+ + +
Sbjct: 178 RRDPNDRVS--IIADHGTVVKNSDGSFLVLEDGHLERFQAGKQEPALVAFSRYAFDMSKF 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFH--NYRAETQFYFLIVIPL-----MLVAMTL 289
+ + R Y + + + K + + + + ++ P+ V
Sbjct: 236 SRARDVTYGIREHY-LWELIWPDPKDPLLAQVPTQFRAEMHDRLLAPIYPFFFAAVTFAF 294
Query: 290 IAASVSLEFSRSNQPRIIVAYGI---FSGFMLYTIIT 323
+ + SR+ VA +GF L +
Sbjct: 295 LGMPRTTRQSRNFSMVGAVACAFVVRLAGFALSVVAN 331
>gi|226943298|ref|YP_002798371.1| YjgP/YjgQ family permease [Azotobacter vinelandii DJ]
gi|226718225|gb|ACO77396.1| permease YjgP/YjgQ family [Azotobacter vinelandii DJ]
Length = 376
Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 60/178 (33%), Gaps = 3/178 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + L T + ++ + Q + + RVP +
Sbjct: 5 IIPRYLSRELLMTLGAVSAVLLAIIMSGRFIKYLAQAAQ-GLLDPGVLLQIMLYRVPSFL 63
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++ + L SE+ + A G+S +L +V +I + + +
Sbjct: 64 ELILPLGLFLGILLAYGRLYLDSEMTVLAATGMSPQRLAVYTLVPAIPVAALVAWMSLGL 123
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A G ++ L+ + K + ++P + + + +
Sbjct: 124 APQGIRLVEQLLNEQKALTEFDT--LVPGRFQTMKDGSRVTYVEDLTDDRTELSRVFI 179
>gi|157164267|ref|YP_001466583.1| ribonuclease PH [Campylobacter concisus 13826]
gi|112800701|gb|EAT98045.1| permease YjgP/YjgQ [Campylobacter concisus 13826]
Length = 342
Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 57/355 (16%), Positives = 123/355 (34%), Gaps = 24/355 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ +Y +L T +++ ++ +I + S L + +P ++
Sbjct: 4 VNKYLLFNFLGTFASLFSTLFLIMSIVFFIQIAR-ITSYIEISFGELFKLYSFMLPRVLL 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P V + F L++ +E ++ +G S ++ F+ S +L +++ +
Sbjct: 63 FVVPIAFFVSLAMTLFRLSKENESIVIFTLGGSPNKIARFFLAFSAILSAALLVIAIVMI 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ + I K + + +++G++ ++D
Sbjct: 123 PIAAQLNANFIDYKKT--VAKLNLKPTQFGQKFSDWMVYVGSESEDKNGTTYKDIVMFNP 180
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
K+ A A I N + + +E + + + + Q
Sbjct: 181 FVKDS-QRLITAKNAKITN----VNQSIELSLNEGKMYDIKDEIYHQSNFKSMKIRTAQS 235
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S IK+ S+ T Y L+ L +A TL A S+ + R +
Sbjct: 236 EEISDVGSIKEYWMEAASSNKRKKDFST--YVLVA--LFPLASTLFAISLGIVTYRYEKG 291
Query: 305 RIIVAY-GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ V G+ F +T+I + S P A IP+I + L +LL K
Sbjct: 292 MVYVGTFGVL--FGYFTLIMLFSS-------KPALA--IPLIFFVFLIAGVLLYK 335
>gi|77165379|ref|YP_343904.1| permease YjgP/YjgQ [Nitrosococcus oceani ATCC 19707]
gi|254433097|ref|ZP_05046605.1| putative permease, YjgP/YjgQ family [Nitrosococcus oceani AFC27]
gi|76883693|gb|ABA58374.1| permease YjgP/YjgQ [Nitrosococcus oceani ATCC 19707]
gi|207089430|gb|EDZ66701.1| putative permease, YjgP/YjgQ family [Nitrosococcus oceani AFC27]
Length = 381
Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/333 (12%), Positives = 103/333 (30%), Gaps = 28/333 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K L +++ I +Q E L+ +
Sbjct: 6 IVDRYILKELSLNATAITLVLLLIFGGIRFIRFLSQATE-GKVPGEAILALSGYEAIGAL 64
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + + ++ + +E++ A G+S LL + + L I + +
Sbjct: 65 VLLLPLASFLAVLLALGRMGADNEVIALFACGVSRGHLLRVVLTFGLALAIGVGGISLYL 124
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ G L QQ + + A+ + + ++
Sbjct: 125 GPAASAEGYRLKQQALLAAETSGLVAGNFK--EAQHGQRVFYAESLTEDGLGMKNVFIQV 182
Query: 184 IDKKNKIIHRKDADLAII------YNDKVKLKKVVEYQYGRIPIDKNSTTLN---IPIKM 234
+ K + R A + + + L+ Y+ + + I +K
Sbjct: 183 WEPTQKTLLR--AARGHLQTDEATGDKYLILEDGYRYELMGEEVGVRIFSFERHGILVKK 240
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
G Q+F + + + + AE Q+ I +P++ + + ++A +
Sbjct: 241 GGAQEFRIRHQTLPTLTLWEM--------GAPKDIAEVQW--RISMPIITLLLVMLAVPL 290
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ RS + A + + + ++
Sbjct: 291 A----RSGPRQGRYAGLVPAVLVYVIYSNMLGI 319
>gi|53803848|ref|YP_114530.1| hypothetical protein MCA2100 [Methylococcus capsulatus str. Bath]
gi|53757609|gb|AAU91900.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
Length = 339
Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/329 (12%), Positives = 113/329 (34%), Gaps = 31/329 (9%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ L +V + + ++P + ++V + R +E+ + G+ ++
Sbjct: 19 GEVATDTIFTLLGLKVVVTLASLLPASVFLSVLMVLGRMYRDNEMTVFACAGVGPLRIYR 78
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ + + + + E++ +LI + + D + + + S Q D+
Sbjct: 79 SILLFAGPVCVLGAFLSLQAMPWSERLSQELISKDEKGADVRGIKAGRFNEFS--QGDVV 136
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGR 218
+ A+++ + + ++ A+ + + V L YQ
Sbjct: 137 LYAEQLNTDKTMSR---VFAQSRRGDETGIVIAESGHMEINDAGDHFVVLNNGRRYQG-- 191
Query: 219 IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE--TQFYF 276
++ FQ + + + K ++ +++ + R +
Sbjct: 192 -------VPGRADFVLNEFQAYGVRINPPEGSQAALKREAADSLHLWMSGRPRELAELQR 244
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTI----ITIMKSFGKSG 332
+ +PL +TL+A ++ R V + S F++Y I I + +G
Sbjct: 245 RLAVPLGTFTLTLLAVPIARTSPRGG-----VWGNLISAFLIYIIYENLQKISQGLLATG 299
Query: 333 ILLPVAAALIPVILTISLSILILLQKEDG 361
L + + + L+ +LL + G
Sbjct: 300 KLSVWTS-YAGIYAVMLLATSVLLARNSG 327
>gi|220935307|ref|YP_002514206.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219996617|gb|ACL73219.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 367
Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/359 (10%), Positives = 104/359 (28%), Gaps = 44/359 (12%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P IL RY + L T L ++++ + + + E + A
Sbjct: 3 PSILTRYLVREVLLTQAAVTLVLLLIIVGGTVARMLREAAE-GRIPADVLLPMVALGSVR 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++P + ++ L + SE+ +A G+ QL ++ L + +++
Sbjct: 62 GLILLLPVSLFLALMLSLGRLYKDSEMAAMKACGVGPEQLYRAIAWMTVPLLVMLTVLVF 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + D + + Q FI + + + +
Sbjct: 122 WGSPLASQGIDQIRIDAEQRSDLVGIAPGRFTESRATGQVFFI--EGLAGDGNTMRGVFI 179
Query: 182 ITIDKKN-------KIIHRKDADLA----IIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI 230
+ + + R D ++++ ++ + + + +
Sbjct: 180 RSRGPEGDEVVTARRGETRVDPLTGQRYLVLHDGYRYRGAPGSQEFHILAFETHGLRVPD 239
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
P K + ++ ++ N + ++ I +P+ +V + +
Sbjct: 240 PTGSTRRGKV-DSLSTAELWQ-------------STNLSHRAELHWRIAMPVSMVLLAAL 285
Query: 291 AASVSL----EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK----SGILLPVAAAL 341
A +S R + + +Y + K SG
Sbjct: 286 ALPLSHTSNPRSGRFGKLTAAIG--------VYILYANFLILSKSWFASGQTPAWLGMW 336
>gi|257459022|ref|ZP_05624141.1| permease YjgP/YjgQ [Campylobacter gracilis RM3268]
gi|257443407|gb|EEV18531.1| permease YjgP/YjgQ [Campylobacter gracilis RM3268]
Length = 348
Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 54/363 (14%), Positives = 120/363 (33%), Gaps = 34/363 (9%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+Y YLK L+ ID+ S + + A + +
Sbjct: 6 KYAALSYLKYFFILLIALECFYVGIDVLTNLKDFPS----SANTALLYIALTAAVALSYT 61
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + I++ FN+ R++ELV A+G+S L+ P + ++ + + + +
Sbjct: 62 LPLSLIFALILMGFNMIRSNELVSFYALGVSKNALIIPPFLIALAITASFIALNSTPFAY 121
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
K +L GD M + + I+I A D T I
Sbjct: 122 ALKFQKNLTDLSPTGGD---------MFLKFEGKYIYIKA----LNGKNANDITIFNIG- 167
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQ-YGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
N + R A L+ V ++ + + + + + + F +
Sbjct: 168 DNSVASRSHASSGEYAGKIWHLRDVNTTTLPTQLKLGGSGLKSKLSAQSEALKGFDPS-S 226
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAE--------TQFYFLIVIPLMLVAMTLI---AASV 294
S Y+ S + + + Y +I PL L+ V
Sbjct: 227 IASVYDTSNVYSIRDALRSIRTFSHQGVNISTIKASLYNMIFFPLFAPLAVLVLYYYLPV 286
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ F ++ + + ++ ++ F +G+++P ++P+I + + +
Sbjct: 287 TGRFF---NLALLSFGFFIATLCAWGVLFVLIRFSLNGVIIPEFGIIVPIIALLGFAAFL 343
Query: 355 LLQ 357
+ +
Sbjct: 344 VFK 346
>gi|83312813|ref|YP_423077.1| permease [Magnetospirillum magneticum AMB-1]
gi|82947654|dbj|BAE52518.1| Predicted permease [Magnetospirillum magneticum AMB-1]
Length = 368
Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/308 (15%), Positives = 107/308 (34%), Gaps = 18/308 (5%)
Query: 15 KTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITL 72
+ + + + L V+ L + + + N +S GA L +P + IIP
Sbjct: 4 QMLVGMIFVSAALACVLWLTQSLRFVEMIVNKGLSIGAFLKLTILLMPGFLVVIIPISLF 63
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
V + + L ELV+ RA G+S L P V+ + + ++ I +
Sbjct: 64 AVVLFTYNRLIADRELVVLRAAGLSHLALARPAVILGLAVSAVGYMLSCWIIPVTVRSFH 123
Query: 133 DLIQQWKD--------NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ ++ G K + + + + + + + H T +
Sbjct: 124 EMQWTIRNDIGNVLLQEGMFNKFGEGLTIYVRSRTPNGELTGLLVHDKRHAQRPVTL--M 181
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
++ +++ + ++ N + +V + ++ T++
Sbjct: 182 AERGALVYTEQGPRVLMVNGNRQ--EVTPGTGKLSLLYFDNYTVDFNTATGAKHDRVRDA 239
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL--EFSRSN 302
RS E++ S R +++ + + PL + L+AA+V L F R
Sbjct: 240 RERSTLELLAIDSSMENKG--ELRRFKSELHSRLTSPLYSLGFPLLAAAVLLTSGFDRRG 297
Query: 303 QPRIIVAY 310
Q ++
Sbjct: 298 QTAQVITA 305
>gi|255264665|ref|ZP_05344007.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
gi|255107000|gb|EET49674.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
Length = 380
Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 76/188 (40%), Gaps = 4/188 (2%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + +F L +++ +V + +Q+ S A +P +I+
Sbjct: 10 LDRYMLSQLMMLFGFFSLVLIMVYWVNRAVILFDQLIA-DGQSAGVFLEFTALSLPNVIR 68
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P ++ V L+ SEL + +A G S +L P +V +L+ +++ + +
Sbjct: 69 LVLPLSAFAASVYVTNRLSTDSELTVMQATGHSAVRLARPVIVFGLLVTALMMVLTHVLV 128
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ D + +N + ++ NP I ++I + + F + T
Sbjct: 129 PTSLSRLNDREAEIAENVTARLLTEGTFL---NPASGITFYVREISASGELLDIFLTDTR 185
Query: 185 DKKNKIIH 192
+ K +I +
Sbjct: 186 NPKRQITY 193
>gi|154148987|ref|YP_001406533.1| YjgP/YjgQ permease [Campylobacter hominis ATCC BAA-381]
gi|153804996|gb|ABS52003.1| putative permease, YjgP/YjgQ family [Campylobacter hominis ATCC
BAA-381]
Length = 340
Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 119/360 (33%), Gaps = 40/360 (11%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+Y F +L T +++ +I +I + ++ L +P I+
Sbjct: 6 KYLFSNFLSTFASLFSTLFLIMSIIFFLQIAR-ITSFVEINLYELTKLYLFMLPRILIFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP V + F L++ +E ++ +G S ++ F+ + ++ + +L+ +
Sbjct: 65 IPISFFVALAMSLFRLSKENETIVLFTLGYSSEKIARFFLFLAFIVSVSMLLISLFMMPL 124
Query: 127 GEKIGIDLI--QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E + + + ++ N + + S+ +FI +K I+E+
Sbjct: 125 AENLKDNFVSYKKISANLNIKSSEFG----QKFSDWLVFIDDQKETNTGSIYENLILYHP 180
Query: 185 DKKNKIIHRKDADLAIIYND----KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K A I N+ +KLK Y + I + K
Sbjct: 181 KNKTSDERIILASSGEIANENSNFSLKLKNGKAYTNDEKKWHISYFDELIIRTVQK-DKI 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
E +++ N + Y L+ L +A A S + R
Sbjct: 240 KENGGILGYWK------------NEKNASKQLSIYVLVS--LFPLASIYFAVSFGIVTYR 285
Query: 301 SNQPRIIVAY-GIFSGFMLY-TIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ I + G+ F + I+ K P+ A IP+ I L + + +
Sbjct: 286 YEKGFIYIGIFGVL--FCYFAMIMIFAKQ--------PLLA--IPLTFFIFLILSYIFYR 333
>gi|283954397|ref|ZP_06371917.1| hypothetical protein C414_000220013 [Campylobacter jejuni subsp.
jejuni 414]
gi|283794014|gb|EFC32763.1| hypothetical protein C414_000220013 [Campylobacter jejuni subsp.
jejuni 414]
Length = 341
Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 55/357 (15%), Positives = 123/357 (34%), Gaps = 41/357 (11%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY +L T L +V ++ ++ ++ S L +P I+
Sbjct: 6 RYVLNQFLSTNLSIFFVLFTIVSMVFFIQLA-KLTSSIQISFLDLLKLYGFMLPRILIFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + + F L++ +E ++ +G S L F+ + L+ ++V +
Sbjct: 65 LPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISALMLVVALVMIPI 124
Query: 127 GEKI------GIDLIQQWKDNGDKQKSDIIPWM----QISNPQQDIFIGAKKILPENHIW 176
++ + ++ + + WM + + + + I + H
Sbjct: 125 VFELQDNFVNYKSIQVKFNYKTGEFGQKFLDWMIFIEKQDSGKYENII----MYHPKHKA 180
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+D + I K+ + + D + K+ + G+ TL + + +
Sbjct: 181 DDKEQLIIAKEAHVQRKDDGFAFSLNQG-----KMYNFDQGQSIFSGEFDTLVVNTQFN- 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
++ ++ FYE ++ + + E Y I L +A TL A L
Sbjct: 235 ----TDNLQTKKFYEYWNDLNENPQRAR------EFVIYATIA--LFPLASTLFALCFGL 282
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + V G+F +Y ++ SF + P+ A L++ +S
Sbjct: 283 VTYRYEKGY--VYLGMFGVIAIYF--GLLSSFSQ----PPILACFGIFSLSLLVSGY 331
>gi|330975728|gb|EGH75794.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 243
Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 62/178 (34%), Gaps = 3/178 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+G+ + +
Sbjct: 61 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A G LI Q + + ++P + K++ +
Sbjct: 121 APQGATQFSLLINQQ--DAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFI 176
>gi|317493503|ref|ZP_07951924.1| YjgP/YjgQ permease [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918446|gb|EFV39784.1| YjgP/YjgQ permease [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 356
Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 56/348 (16%), Positives = 117/348 (33%), Gaps = 20/348 (5%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
++ + ++G +I +F + ++ + +V + ++ ++P V
Sbjct: 12 IRRLVVIIVGFLIFIFASYSAQRYLTEAANGTLALEVVLDIVFYKVLIALEMLLPVGLYV 71
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
V L SE+ AIG S +L ++ +I L I L+
Sbjct: 72 SVGVALGQLYTDSEITAISAIGASPIRLYKAVMLLAIPLSILVTLMSMYARPWAYAQIYQ 131
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
L QQ + S + M N + + +++I P+++ D T ++R
Sbjct: 132 LEQQ--SQSELDVSHLRAKMFNINDSGRMIL-SEEINPDSNHLTDVLIYTSSGNKTSVYR 188
Query: 194 KDADLAIIYN-----DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
A + N V L Y D + + +D A R
Sbjct: 189 --AKTVDVTNPSPITPSVILHSGTGYTLRHQGTDDSERVYR-NLTLDLKPLNLSVDAKRK 245
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+I + ++ ++ E + M L+A S+S R + ++
Sbjct: 246 AKSVIALIRSADPADYAEVQWRE-------SRGVNAFLMALLAISLSRVKPRQGRFSTLL 298
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
I + Y + +S SG L + +L + + +L+L+
Sbjct: 299 PLTILFTVIFYG-GNVCRSLVASGYLSVTPGVWLVPML-MFIGVLVLI 344
>gi|260886192|ref|ZP_05897457.1| putative permease [Prevotella tannerae ATCC 51259]
gi|260850440|gb|EEX70309.1| putative permease [Prevotella tannerae ATCC 51259]
Length = 629
Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 48/141 (34%), Gaps = 3/141 (2%)
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P L+ +++ F N+ EL+ +A G+S+ +++ P V I L + N
Sbjct: 32 MVPMALPLAVLLASLISFGNMGERLELLAMKAAGVSLLRIMRPLAVLVIGLAAVSFYFQN 91
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A +K L+ ++ + + + ++ +
Sbjct: 92 RAALDAQKNLTSLLWSLRETSPALEIPEGVFY---GKINSFSLYVERKDVATGKLYNVMI 148
Query: 182 ITIDKKNKIIHRKDADLAIIY 202
D+ AD +
Sbjct: 149 YKTDQGFDKAQIVVADSGRLE 169
Score = 42.9 bits (100), Expect = 0.069, Method: Composition-based stats.
Identities = 11/98 (11%), Positives = 26/98 (26%), Gaps = 1/98 (1%)
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
S + + Q++ + + + I A + R + +
Sbjct: 329 SLTTEEGDKSVRTHRIQWHQKFTMSIACIFFFFIGAPLGA-IIRKGGLGMPTIIAVILFI 387
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
Y I T + G + I ++ L +
Sbjct: 388 FYYIINTSGMKMARDGAWNMIFGMWISTVVLTPLGCFL 425
>gi|149915564|ref|ZP_01904090.1| hypothetical protein RAZWK3B_06402 [Roseobacter sp. AzwK-3b]
gi|149810456|gb|EDM70299.1| hypothetical protein RAZWK3B_06402 [Roseobacter sp. AzwK-3b]
Length = 376
Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 56/333 (16%), Positives = 112/333 (33%), Gaps = 22/333 (6%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+Y + + +F L + + ++ + ++ S L +P ++
Sbjct: 5 DQYVIRKLITLFAFFALILIAIFWLDKALRMFERLLGKGQ-SNWLLLELILLTLPPVVAS 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
I+P + + V L+ +E+ I +A G S ++++ P + IL + N I
Sbjct: 64 ILPIASFASAVSVTNRLSSEAEITIMKASGCSTYRIIRPIFIFGILTTSLMAWLTNSILP 123
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
K L Q N ++ P +FIG K+ + + F S D
Sbjct: 124 ESGKRLSSLRSQVDQNITSSFLTEGEFLH-PTPGVTLFIG--KVTQDAELRRIFLSDRRD 180
Query: 186 KKNKIIHRKDADLAIIY--NDKVKLKKV-------VEYQYGRIPIDKNSTTLNIPIKMDG 236
+ II A+ A V+L V E L+I ++
Sbjct: 181 LRETII--ITAEKAYTEHSPTTVQLLMVDGTTQILRENDNKLFVGRFEEYALDISELVET 238
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS--V 294
+ E+IK+ S S + + P++ ++ A+ +
Sbjct: 239 TYSTQKTVTQAKTVELIKQPSEVIASTKATLGEVAFELHNRFAQPILCAIAAVLGATTLL 298
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ +SR R I F L + +++S
Sbjct: 299 TGSYSRFGVWRQ-----IGIAFFLLVGLKLVES 326
>gi|163759136|ref|ZP_02166222.1| hypothetical protein HPDFL43_05210 [Hoeflea phototrophica DFL-43]
gi|162283540|gb|EDQ33825.1| hypothetical protein HPDFL43_05210 [Hoeflea phototrophica DFL-43]
Length = 385
Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 60/354 (16%), Positives = 125/354 (35%), Gaps = 31/354 (8%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
T + L A +LV + + + +LAAT +P +I + PF L+
Sbjct: 5 TFWSLTAATLLVMTTQVLIRVDVLTTTGQA-FGAFMLLAATIIPSVISVVAPFALLIGVS 63
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V +N SELV+ A G +L P + S+ L I +LV N + + D++
Sbjct: 64 QVLSGMNSDSELVVIEAAGARPATVLRPVMALSVALSIMVLLVANFVEPWSNRKLYDVLA 123
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
Q + + +M++ + +++ + LP ++ + + A
Sbjct: 124 QAQSDLFSVAVRSGTFMKLEDG---LYVQVNEKLPGGA-LSGI-FLSDTRTDGTEAIYYA 178
Query: 197 DLAIIYNDKV---------KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+I + +L++ + +S L++ + Q + + +
Sbjct: 179 KSGVIQPEGDTNILLLLDGELQQRDTSNDQISIVTFSSYALDMAAFVPAGQNAARRPKEQ 238
Query: 248 SFYEIIKKMSFSNKSNIFH-------NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S ++ S + R T Y L L+A + + S +
Sbjct: 239 STGYLLAPPSDDYYAGNAPYIIKEELVQRFSTWLYPLA---FGLIAFAFLGKARSNRHEQ 295
Query: 301 SNQPRIIVAYGIFS-GFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
++ + + GF Y++ G S + V + L+P +L + L
Sbjct: 296 FQNGALVAGIALGARGFGFYSVEEA----GASSAME-VLSYLVPGMLIVLFGAL 344
>gi|156502931|ref|YP_001428996.1| putative permease, YjgP/YjgQ family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|156253534|gb|ABU62040.1| putative permease, YjgP/YjgQ family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
Length = 360
Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 52/364 (14%), Positives = 113/364 (31%), Gaps = 34/364 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + + I +P +
Sbjct: 2 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYS-QGLGIDSIVKFVILTIPENV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL----LNPFVVGSILLGIFTVLV 119
+ P + I+ F +E+ ++ A GI+ Q+ L P V +I + + TV+
Sbjct: 61 SLVAPIAIFLAIIICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTI-ITLITVMY 119
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+NP++ I + II P I + D
Sbjct: 120 LNPLSKQTLDIYRASLSAKALLSSITDQKII-----KAPDGK-IIHIG--NKSGNTLSDV 171
Query: 180 TSITIDKKNKIIHRKDADLAIIYND----KVKLKKVVEYQYGRIPIDKNS-------TTL 228
++ A A I +D + V Y + + T+
Sbjct: 172 FLYQNTPQDGEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYTI 231
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
D ++ + E +F++K+N + +F I + ++ +
Sbjct: 232 FDNSDRDYNHNRVDRLYMHTLIE-----NFNDKNNG---TAYKAEFLGRINNAISVIVSS 283
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
L+A ++ R N+ + + + + + + + +P I
Sbjct: 284 LLALALCRLRPRQNKYAK-LLPSVVVLAIYLCTNMFINTLMANSSVPVWIGFWLPHIFFT 342
Query: 349 SLSI 352
++
Sbjct: 343 IFAV 346
>gi|260450919|gb|ACX41341.1| permease YjgP/YjgQ family protein [Escherichia coli DH1]
Length = 359
Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/314 (14%), Positives = 108/314 (34%), Gaps = 12/314 (3%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 34 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 93
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ I + + + +++ + K N + Q +N +F
Sbjct: 94 AAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF 153
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
I + ++D I K AD + +L+ +
Sbjct: 154 I----ESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLT----QLRDGSQVVTLNQGTR 205
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF--HNYRAETQFYFLIVI 280
T + ++ FQ + ++ + ++ RA + + I +
Sbjct: 206 FEGTAMLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWCITL 265
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
+ M L+ +S+ R + + + + + + I T +KS G G L P
Sbjct: 266 VFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWM 324
Query: 341 LIPVILTISLSILI 354
++ ++L+I++
Sbjct: 325 WTVNLIYLALAIVL 338
>gi|62260254|gb|AAX77892.1| unknown protein [synthetic construct]
Length = 395
Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 54/365 (14%), Positives = 116/365 (31%), Gaps = 36/365 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + + I +P +
Sbjct: 28 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYS-QGLGIDSIVKFVILTIPENV 86
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL----LNPFVVGSILLGIFTVLV 119
+ P + ++ F +E+ ++ A GI+ Q+ L P V +I + + TV+
Sbjct: 87 SLVAPIAIFLAIVICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTI-ITLITVMY 145
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWED 178
+NP++ I + II P I IG K + D
Sbjct: 146 LNPLSKQTLDIYRASLSAKALLSSITDQKII-----KAPDGKIIYIGNKS----GNTLSD 196
Query: 179 FTSITIDKKNKIIHRKDADLAIIYND----KVKLKKVVEYQYGRIPIDKNS-------TT 227
++ A A I +D + V Y + + T
Sbjct: 197 VFLYQNTPQDGEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYT 256
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ D ++ + E +F++K+N + +F I + ++
Sbjct: 257 IFDNSDRDYNHDRVDRLYMHTLIE-----NFNDKNNG---TAYKAEFLGRINNAISVIVS 308
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
+L+A ++ R N+ + + + + + + + +P I
Sbjct: 309 SLLALALCRLRPRQNKYAK-LLPSVVVLAIYLCTNMFINTLMANSSVPVWIGFWLPHIFF 367
Query: 348 ISLSI 352
++
Sbjct: 368 TIFAV 372
>gi|119953584|ref|YP_945794.1| hypothetical membrane spanning protein [Borrelia turicatae 91E135]
gi|119862355|gb|AAX18123.1| hypothetical membrane spanning protein [Borrelia turicatae 91E135]
Length = 429
Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 60/417 (14%), Positives = 132/417 (31%), Gaps = 67/417 (16%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + K L L + F+ + + + + + +P+II
Sbjct: 11 YIIIEFFKYFLITFLFFFFVFFINQILFFMRILLQN-YVPFLKAFIFVIYSLPMIIALSP 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF L+ I+ + +E++ R+IGISI+ LL PF +++ + + + + + G
Sbjct: 70 PFAALLSVILTIYRFKLNNEILAFRSIGISIFNLLVPFFKLGVVIALISFITNDFLLPLG 129
Query: 128 EKIGIDLIQQWKDN---------GDKQKSDIIPWMQISNPQQ---------------DIF 163
+ + + K+ KQ D+I + D
Sbjct: 130 SIGRLKIFNEIKEEIPHLILKPYSSKQYGDLIFVSGEKSETGYKNVTFFDNTRLKGYDRI 189
Query: 164 IGAKKILPEN------HIWEDFTSITIDKKNK-IIHRKDADLAIIYNDKVKLKKVVEYQY 216
+ A+++ + I D SI + + AD D+V Y
Sbjct: 190 LMARELNIQKENYQVYFILNDVLSIALTEDESGFYDYFYADRMKYSIDQVTFSDSWLLSY 249
Query: 217 GRIPIDKNSTTLNIPIKMDGFQKFSE------------QFASRSFYEIIKKMSFSNKSNI 264
+ + +K D K F++ + K SF ++ ++
Sbjct: 250 VAPSQMSIRDVMKLIVKQDKLVKELNMKNDLEEDLLYLNFSNIYLNYLYDKNSFLDEESV 309
Query: 265 FHNYRAE-----------------------TQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
N +FY I +PL ++ +A + + ++
Sbjct: 310 LENLSYMHNLILNYSPYEDLIVKRSYALYCLEFYQKISLPLSVLFFIFLAFGMGMYSNKK 369
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + I + + K + P ++P ++ I +++ L+
Sbjct: 370 YSIILELVISILICVFYWVMFIGGKVYTVQYSPNPFLITVLPNVMLIFAGLILFLRL 426
>gi|121595375|ref|YP_987271.1| permease [Acidovorax sp. JS42]
gi|120607455|gb|ABM43195.1| permease YjgP/YjgQ family protein [Acidovorax sp. JS42]
Length = 396
Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 56/364 (15%), Positives = 127/364 (34%), Gaps = 24/364 (6%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY + + L L ++ + L + + + SI+ +LAA VP
Sbjct: 6 FDRLDRYAVRLFAVPLLTALATMLLATMLQRLLRLFD-IAASTGASIASVLLLAADLVPH 64
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P + + SEL A G SI ++ P+ + ++ + +F + +
Sbjct: 65 YLGLALPVAFTAAIFMAAARMGDDSELDAMLATGRSIARIAAPYFILALFVCVFNLYLFG 124
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + K + ++ I++ A ++ +
Sbjct: 125 RLQPLARYDYHVKMDAVLQTNWDAKIEENRFIDIAHGFSFS---ADRVEDGGRRFIGV-- 179
Query: 182 ITIDKKNKIIHRKDADLAIIYND------KVKLKK---VVEYQYGRIPIDK--NSTTLNI 230
++N I A + ++ ++KL+ V + G I + + +
Sbjct: 180 FMERRQNGIEEITTAVRGQLESNPDTRKMRLKLEDGLRVRQTPDGAIATTRFVDGYVEDF 239
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
++ E R+ E+ M + + + +F+ + L+ + + L+
Sbjct: 240 SKTRAPYRDRGETATERTLPELWLAMCKTCDPD------SAAEFHSRLARALLPLLLPLL 293
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A + + R + +V + + +T+ KS +SG L A P +L L
Sbjct: 294 ALPLGMASKRGRRTPGVVFASLALLLLNHTL-QFGKSLAESGRLPAALAVWTPFLLFALL 352
Query: 351 SILI 354
S+ I
Sbjct: 353 SLWI 356
>gi|198276083|ref|ZP_03208614.1| hypothetical protein BACPLE_02270 [Bacteroides plebeius DSM 17135]
gi|198270895|gb|EDY95165.1| hypothetical protein BACPLE_02270 [Bacteroides plebeius DSM 17135]
Length = 630
Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/193 (17%), Positives = 66/193 (34%), Gaps = 6/193 (3%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
LK+ L G + I + + + EL + + A +I +P
Sbjct: 11 VLKSFLLLFSGTFFICLFIFMMQFLWRYVDELVGKGLEINVLAQFFFLSALTLIPLSLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ ++ F N EL+ +A GI +++++ P V+ + LG+ + N I +K
Sbjct: 71 AILLAALMTFGNFGERYELLSMKAAGIPLFRIIRPVVLFCMFLGVMSFFFQNVIGPKAQK 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
L+ K + + I KK + I +D +
Sbjct: 131 ELWTLLVSMKQKSPEVDIPEGVFYSDIEGYN---IYVKKKDRDTGILKDVLIYNFSDGFE 187
Query: 190 IIHRKDADLAIIY 202
H A+ +
Sbjct: 188 NAHIIWAEEGKLE 200
Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 48/161 (29%), Gaps = 2/161 (1%)
Query: 195 DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF-SEQFASRSFYEII 253
DA + + + + I + LN + S + S
Sbjct: 292 DAMKTAYRKPVLTKTDSTKIEKEHLAIINTDSILNGMTSAQKLKTLNSTETRLSSLMSDW 351
Query: 254 KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
S+ + + R ++ ++ I + L + I A + R + V +
Sbjct: 352 SMKSYMTREADNNIRRHQSDWHKKITLSLACIIFFFIGAPLGA-IIRKGGLGMPVVISVL 410
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I + KSG + + + I+ L +
Sbjct: 411 IFVLYYIIDSGATRVAKSGEMNIILGTWMSTIILAPLGGFL 451
>gi|188994506|ref|YP_001928758.1| hypothetical protein PGN_0642 [Porphyromonas gingivalis ATCC 33277]
gi|188594186|dbj|BAG33161.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
33277]
Length = 651
Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/200 (14%), Positives = 68/200 (34%), Gaps = 14/200 (7%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGE------LPNYSISRGAVLAATRVPL 61
Y F L+T L LL + + + L + + + L +S+ AA +
Sbjct: 10 YLF--MLQTFLPLLLMTFAICWFVVLMQFLWKYVDDMVGKGLSAIILSKMLFYAAMTL-- 65
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P L+ +++ F NL EL+ ++ G+ +++++ P + + + N
Sbjct: 66 -VPMALPLGVLLASLMTFGNLGERLELLAMKSAGVPLYRIMKPLFFSVVAIACGLFIFQN 124
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++ + + + + + AKK + D
Sbjct: 125 DLMIQSQVKFYTILFSARRATPELEIPEGSFY--NGIHGYNLFVAKK-DRRTGMLHDMMI 181
Query: 182 ITIDKKNKIIHRKDADLAII 201
+ AD +
Sbjct: 182 YDHSQGFADARIIVADSGKL 201
Score = 52.5 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 12/136 (8%)
Query: 230 IPIKMDGFQKFSE---QFASRS-----FYEIIKKMSFSNKSNIFHNYR---AETQFYFLI 278
IP +D + S + +RS F I + +S F R +++
Sbjct: 333 IPTTLDSIESRSTLSQRLEARSVMINRFDTYIGECMIMKESTAFERDRRISHMREWHTKF 392
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
P+ + I A + R + + + Y + T K+
Sbjct: 393 TYPVACLIFFFIGAPLGA-IIRKGGLGTPIVASVLFFVLYYMVDTFGVKMAKTEEWPVWL 451
Query: 339 AALIPVILTISLSILI 354
+ + + +
Sbjct: 452 GMWLSTFVLVPFGFFL 467
>gi|34540406|ref|NP_904885.1| hypothetical protein PG0598 [Porphyromonas gingivalis W83]
gi|34396719|gb|AAQ65784.1| hypothetical protein PG_0598 [Porphyromonas gingivalis W83]
Length = 651
Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/200 (14%), Positives = 69/200 (34%), Gaps = 14/200 (7%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGE------LPNYSISRGAVLAATRVPL 61
Y F L+T L LL + + + L + + + L +S+ AA +
Sbjct: 10 YLF--MLQTFLPLLLMTFAICWFVVLMQFLWKYVDDMVGKGLSAIILSKMLFYAAMTL-- 65
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ +P L+ +++ F NL EL+ ++ G+ +++++ P + + + N
Sbjct: 66 -VPMALPLGVLLASLMTFGNLGERLELLAMKSAGVPLYRIMKPLFFSVVAIACGLFIFQN 124
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++ + + + + + + AKK + D
Sbjct: 125 DLMIQSQVKFYTILFSARRATPELEIPEGSFY--NGIRGYNLFVAKK-DRRTGMLHDMMI 181
Query: 182 ITIDKKNKIIHRKDADLAII 201
+ AD +
Sbjct: 182 YDHSQGFADARIIVADSGKL 201
Score = 52.5 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 12/136 (8%)
Query: 230 IPIKMDGFQKFSE---QFASRS-----FYEIIKKMSFSNKSNIFHNYR---AETQFYFLI 278
IP +D + S + +RS F I + +S F R +++
Sbjct: 333 IPTTLDSIESRSTLSQRLEARSVMINRFDTYIGECMIMKESTAFERDRRISHMREWHTKF 392
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
P+ + I A + R + + + Y + T K+
Sbjct: 393 TYPVACLIFFFIGAPLGA-IIRKGGLGTPIVASVLFFVLYYMVDTFGVKMAKTEEWPVWL 451
Query: 339 AALIPVILTISLSILI 354
+ + + +
Sbjct: 452 GMWLSTFVLVPFGFFL 467
>gi|316933708|ref|YP_004108690.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
gi|315601422|gb|ADU43957.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
Length = 388
Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/337 (13%), Positives = 111/337 (32%), Gaps = 23/337 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G + RY F+ L + + ++++ + M +I L VP++
Sbjct: 2 GSIDRYIFRTTLVSFAVVMGSLTGVIWITQALRGIDLMTS-QGQTIITFLGLTGLAVPVL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I P ++ L SE+++ A G+S +L PF ++++ ++
Sbjct: 61 VLVIAPIALMIAVAHTLNRLAVDSEIIVMNAAGLSPIRLFRPFFYATMVVAALVTVIGAY 120
Query: 123 IATSGEKI--------GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
IA G + D++ G + + +++ Q + I
Sbjct: 121 IAPDGLRRIARWDSEITADVLANVLQPGRFAQLEPGLTIRVRERQPGGILVGVFIDDARD 180
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
E + I ++ + ++ + ++ + + + + + + ++ K
Sbjct: 181 PNERISII--ADHGTVLKNEKGSFLVLEDGHLERFQAGKQEPTLVAFSRYAFDMS---KF 235
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL-----MLVAMTL 289
+ S R +E++ + ++ + ++ P+ VA
Sbjct: 236 SRARDVSYGIRERYLWELLFPPADDPLLARLPTE-FRSEMHDRLLAPIYPFFFATVAFAF 294
Query: 290 IAASVSLEFSRSNQPRIIVAYGI---FSGFMLYTIIT 323
+ + SR+ V +GF L I
Sbjct: 295 LGLPRTTRQSRNFSMIGAVLVAFVVRLAGFALSVIAN 331
>gi|293610039|ref|ZP_06692340.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827271|gb|EFF85635.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 366
Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/198 (15%), Positives = 65/198 (32%), Gaps = 6/198 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + S + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVISLLTLIMMGGRLIKYFG-VAAQGRLDASILFSIIGYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL + +++ +F +++ +
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVFQSVLMLWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + L + I A + + +D
Sbjct: 121 TPWGLREFEKLTTTQAVRTGFDLVR----PREFISSGPYTIYAGSLSEDRKNLKDIFFYQ 176
Query: 184 I-DKKNKIIHRKDADLAI 200
K++K A A
Sbjct: 177 RAAKEDKPDVMILAKEAT 194
>gi|226951739|ref|ZP_03822203.1| permease YjgP/YjgQ-like protein [Acinetobacter sp. ATCC 27244]
gi|226837529|gb|EEH69912.1| permease YjgP/YjgQ-like protein [Acinetobacter sp. ATCC 27244]
Length = 340
Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/282 (16%), Positives = 99/282 (35%), Gaps = 13/282 (4%)
Query: 32 DLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVIS 91
L +I + + + A R+P + I+P + ++VF L E+ +
Sbjct: 4 QLIKIFGRAAQ-GRLDGGVLLSIIAYRLPEFLTLILPLGFFIGLMLVFGRLYVDHEMAVL 62
Query: 92 RAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIP 151
G+S QL + + + I +++ A++G + L+Q
Sbjct: 63 NGSGVSRNQLTRLLLPMTAVFLIVQAVLMCWGASAGIRGYQSLMQTQAVRAGFDLVRPKE 122
Query: 152 WMQISNPQQDIFIGAKKILPENHIWEDFTSI----TIDKKNKIIHRKDADLAIIYNDKVK 207
++ I A + + +D DK +++I K+A I ND
Sbjct: 123 FI----SSGSYTIYAGSLSEDRKNLKDIFYYYKSDREDKPDQMILAKEATRVEIENDT-- 176
Query: 208 LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF-YEIIKKMSFSNKSNIFH 266
VV+ GR + + ++ E +F E ++ +S S
Sbjct: 177 -ASVVDLVQGRRYEIYPNQPRYTQAEFQSYRLRLENDKDVNFESEDVEALSMSKLWQKRD 235
Query: 267 NYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
++ + + I P ++V +A ++S R + ++
Sbjct: 236 DFVVRGELGWRIFGPFVMVVALFLAVALSEVSPRQGRYYRLI 277
>gi|330890526|gb|EGH23187.1| hypothetical protein PSYMO_17673 [Pseudomonas syringae pv. mori
str. 301020]
Length = 231
Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/178 (15%), Positives = 62/178 (34%), Gaps = 3/178 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+S +LL + + L+G+ + +
Sbjct: 61 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
A G LI + + + ++P + K++ +
Sbjct: 121 APQGATQFSLLINKQ--DAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFI 176
>gi|253997571|ref|YP_003049635.1| permease [Methylotenera mobilis JLW8]
gi|253984250|gb|ACT49108.1| permease YjgP/YjgQ family protein [Methylotenera mobilis JLW8]
Length = 374
Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 51/362 (14%), Positives = 129/362 (35%), Gaps = 24/362 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ L +T +I + V ++ + + +
Sbjct: 2 LFRHSLIKELISTAAGAFLILIGIVVAQRAGTLVRLAAKGILPNDAITTILGFNMVKFLP 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++ + ++ R SE+VI + G+SI + P + + +F + + +
Sbjct: 62 MVLSLSLFLAVLMTLSRWYRDSEMVIWFSGGLSINNWVRPVLTFIFPVILFILALSLFVM 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
G Q + D + + +N + F+ + ++ ++ T+
Sbjct: 122 PWATSKGELYRTQLEARDDLATISPGVFKESANGDRVFFM--ESFDELGNVVKNIFVQTM 179
Query: 185 DKKNKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLN---IPIKMDG 236
+ + A Y ++ V ++ Y+ R + ++TT I I+
Sbjct: 180 QHQK--LGVIVAAQGSRYTEKNGDNFVLMENGKRYEGRRGSAEFSTTTFEKYAIRIEAKE 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
++ S+S E++ S+ +AE Q+ + IP+ + ++L+A +S
Sbjct: 238 AKEEPPSTQSKSTKELV--------SSANSTNKAELQW--RLAIPISALILSLLAIPLSA 287
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R+ + + + + +++I +++ G L + PV L + L
Sbjct: 288 LDPRAGRSANFILALVIY-IIYNNLLSIFQAWTAQGKLSALVGLW-PVHAFFLLLTIYLF 345
Query: 357 QK 358
++
Sbjct: 346 RR 347
>gi|50083532|ref|YP_045042.1| hypothetical protein ACIAD0254 [Acinetobacter sp. ADP1]
gi|49529508|emb|CAG67220.1| conserved hypothetical protein; putative permease [Acinetobacter
sp. ADP1]
Length = 366
Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/307 (13%), Positives = 102/307 (33%), Gaps = 7/307 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFG-VAAQGRLDAGVLFSIIGYRMPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + GIS +L + +++ + +++ +
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGISRIRLGQLLIPLALVFLVIQGILMLWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + L ++ I A + + +D
Sbjct: 121 TPWGLRQFDQLSSSQAVRTGFDLVRPKEFI----SSGPYTIYAGDLSEDRKNLKDIFFYQ 176
Query: 184 ID-KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
K+ K A A + + VV+ GR + ++ E
Sbjct: 177 RAQKEGKPDVMILAKEATRVVMENETANVVDLIQGRRYEIYPGKAKYSQAEFQRYRLRLE 236
Query: 243 QFASRSF-YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S +F + ++ + S N +++ ++ + + P +V ++A ++ R
Sbjct: 237 NDKSATFETDKVEALPSSKLWNKWNDPVIASEMGWRVFGPFTIVIALMMAVALCEVSPRQ 296
Query: 302 NQPRIIV 308
+ ++
Sbjct: 297 GRYYRLI 303
>gi|56698597|ref|YP_168974.1| hypothetical protein SPO3780 [Ruegeria pomeroyi DSS-3]
gi|56680334|gb|AAV97000.1| membrane protein, putative [Ruegeria pomeroyi DSS-3]
Length = 375
Score = 67.2 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 51/364 (14%), Positives = 124/364 (34%), Gaps = 29/364 (7%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
YF + L +F + + ++ + +++ + A +P +++ ++
Sbjct: 7 YFLRQLLVLCGFFAFVLVGVFWISKAVSLFDRLIS-SGQTAMVALEFTALTLPTLVRTVM 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + V LNR SE+ + A G S ++L P ++ ++ + + +
Sbjct: 66 PMAAFCATVYVTNRLNRESEMTVMLATGSSPFRLARPVILFGLVCAAMLATITLYLRPAA 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF-------- 179
+ + Q + +M +P + + + KI + D
Sbjct: 126 MLRLEARQAEVAGDMTAQLLNDGQFM---HPVKGVTVYIGKIDRDGT-LNDVYLSDRRAP 181
Query: 180 -TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+T + R +A++ + L+ + + ++ + + +
Sbjct: 182 ERVVTYTSSKAFLARSGEQIALVMVEGTALQMETGRRTLSTTVFRDFSYDISALAKRDIE 241
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA-ASVSLE 297
+ + + + + + + + + VA+TLI +++ L
Sbjct: 242 RRQDIRGMPTL-ALATAFDGEGLAETYSRGEISEELQERLSWIGVSVAVTLIGFSTLMLG 300
Query: 298 -FSRSNQPRIIVAYGIFSG-FMLYTIITIMKSFGKSGILLPVAAAL----IPVILTISLS 351
FSR ++A F+G L + + +F S P P + I+LS
Sbjct: 301 TFSRFGLWPQLIAA--FAGLIALEGMRSTATAFVGS---HPGL--WWVQHAPALGGIALS 353
Query: 352 ILIL 355
IL L
Sbjct: 354 ILFL 357
>gi|294084200|ref|YP_003550958.1| hypothetical protein SAR116_0631 [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663773|gb|ADE38874.1| hypothetical membrane spanning protein [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 364
Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/299 (14%), Positives = 108/299 (36%), Gaps = 19/299 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + T + + ++++ ++ + I +++ T +PL + +
Sbjct: 6 YIFNQLFRATCVISMVLIGIMWLFQTIKLLELVVNK-GAPIFDFLLMSITVIPLWLTIAL 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P V VF + EL + +A+G+S QL + +LL + +
Sbjct: 65 PIAGFVAVNWVFHRILADRELTVMQAVGLSPAQLAKAPIALGMLLTSVLYFNSVYLLPTS 124
Query: 128 EKIGIDLIQQWKDN--------GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
I DL ++ G + M I + +++ + + ++ D
Sbjct: 125 FGIYKDLQFNLRNGIPVILLQDGVFTEVVPGLTMFIGSREENDVV--SDVFIQDTRTIDK 182
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T I + K + + I+ N + + + +S +L K ++
Sbjct: 183 TIILTAENGKFVGKDYHPTLILGNGQRLEVNSDGESGALLLFETHSLSLVTNEK-KPSER 241
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE--TQFYFLIVIPLMLVAMTLIAASVSL 296
+ S ++ K + + +Y + + ++ I P++ +A+ ++ +++L
Sbjct: 242 IANDMNEDSISNLLD-----AKKSPYADYAFQRIAEGHYRIASPVLALALIMMVIAITL 295
>gi|240948566|ref|ZP_04752939.1| hypothetical protein AM305_06766 [Actinobacillus minor NM305]
gi|240297074|gb|EER47645.1| hypothetical protein AM305_06766 [Actinobacillus minor NM305]
Length = 309
Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/248 (12%), Positives = 72/248 (29%), Gaps = 11/248 (4%)
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ Q ++P + ++ SE+ + RA GI L + SI V +
Sbjct: 1 MAQLMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLAKVALFLSIFTTALAVYNVF 60
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +L+ + K N +M + I + + D
Sbjct: 61 WLTPWAINKQSELLAEAKANPRFSALSAGQFMTAGG----YVLFIDNINYDQNKLNDIYV 116
Query: 182 ITIDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
D++ K AD + L + T ++ F+ +
Sbjct: 117 FQPDQQKKNRPSVIVADSGELKG----LPNGDQILTLENSTRYEGTAKVADFRISHFENY 172
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNY--RAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + K + ++ + + + A + + + M L+A +S
Sbjct: 173 TAYLGHQDVDSDEKLVQRADWAKLVADKSPEARAELQWRFALIFATPIMALLAVPMSSVN 232
Query: 299 SRSNQPRI 306
R +
Sbjct: 233 PRQGRFAK 240
>gi|224026840|ref|ZP_03645206.1| hypothetical protein BACCOPRO_03597 [Bacteroides coprophilus DSM
18228]
gi|224020076|gb|EEF78074.1| hypothetical protein BACCOPRO_03597 [Bacteroides coprophilus DSM
18228]
Length = 631
Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/193 (18%), Positives = 65/193 (33%), Gaps = 6/193 (3%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYS--ISRGAVLAATRVPLIIQQIIPF 69
LK+ L G + I + + + EL I A +I +P
Sbjct: 11 VLKSFLLLFAGTFFICLFIFMMQFLWRYVDELVGKGLEIKVLAQFFFLSALTLIPLSLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ ++ F N EL+ +A GI + +++ P ++ +LLG+ + N + +K
Sbjct: 71 AILLAALMTFGNFGERYELLSMKAAGIPLLRIMQPVILFCVLLGLTSFFFQNVVGPKAQK 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
LI K + + + I K+ E I +D +
Sbjct: 131 ELWTLIVSMKQKSPEVDIPEGVFYSDIDGYN---IYVKQKDRETGILKDVLIYNFSDGFE 187
Query: 190 IIHRKDADLAIIY 202
H A +
Sbjct: 188 NAHIIWAAEGKLE 200
Score = 55.2 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 3/145 (2%)
Query: 210 KVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR 269
K+ E + I ID TL K+ + +S S S+ K +
Sbjct: 310 KIQEEKLSVINIDSVFNTLTSAEKLKTLSTCENRLSSLS--SDWSMKSYLTKETDANIRG 367
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ ++ I + L + I A + R + V + + Y I +
Sbjct: 368 HRSDWHKKITLSLACIIFFFIGAPLGA-IIRKGGLGMPVVLSVLIFILYYIIDSGATRVA 426
Query: 330 KSGILLPVAAALIPVILTISLSILI 354
KSG + + + ++ L +
Sbjct: 427 KSGEMNIILGTWMSTLVLAPLGGFL 451
>gi|315500012|ref|YP_004088815.1| permease yjgp/yjgq family protein [Asticcacaulis excentricus CB 48]
gi|315418024|gb|ADU14664.1| permease YjgP/YjgQ family protein [Asticcacaulis excentricus CB 48]
Length = 384
Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 52/322 (16%), Positives = 106/322 (32%), Gaps = 23/322 (7%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + L + + + + + E S+S + +P + I
Sbjct: 7 YISRQMRTPILGAIAALTAIAILSQSLTQFDVIVERGQ-SLSTFLKITFLALPQLSGLIF 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI---LLGIFTVLVINPIA 124
P V +V ++ E+V A G+S+W++ +P V + L+G+ L I P A
Sbjct: 66 PVAIFVGTLVALNRMHNDHEIVAGYANGMSLWRIASPVVRFGVYITLMGLLMTLFIQPAA 125
Query: 125 TSGEKIGI-----DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ + + D+I GD + + + Q + I D
Sbjct: 126 SRAMREELFKIKTDVIAAAVREGDFSTTPSGMTIYVQRIDQSGLLRQIFIRTPGPHGLDR 185
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
T + ++ ++I + L+ Q + + T + +
Sbjct: 186 TYL--AREGRVITPVK------GGQVLILRDGSTQQLSPEGVLNHLTFAEYSFDISQYVI 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHN---YRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + ++ F N++ + N + + + I PL + L+A L
Sbjct: 238 SEDYLHFKDSDRFPHELFFPNRAMEWENGNWTKLMAEGHARISGPLYNLGFCLLAIVGVL 297
Query: 297 E--FSRSN-QPRIIVAYGIFSG 315
FSR RI I +G
Sbjct: 298 GGAFSRQGYGRRIATVSFIAAG 319
>gi|228470134|ref|ZP_04055043.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
gi|228308272|gb|EEK17127.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
Length = 683
Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/243 (12%), Positives = 85/243 (34%), Gaps = 5/243 (2%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P I++ + + +L L +L +V + L + + + + +
Sbjct: 10 PKIMYIFMVRSFLPLLLMTILICWFVVLMQFLWQHIDDLVGK-GMDVGVLLEVIFYAGLY 68
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +P L+ +++ F NL EL+ ++ G+ + +++ P V+ + + + ++
Sbjct: 69 VLPTAVPLGVLLASLMTFGNLGERLELLAMKSAGVPLSKIMKPLVILVTCIALGLFVYLD 128
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ + + + + I++G K + +
Sbjct: 129 RGVQKASVRVYQILFSARYARPELELPKGIFFN-GIDGYSIYVGDKDV--ATSTLYNVMI 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ ++ AD + D KL ++ + G +S T IP ++ +
Sbjct: 186 YDLSEQRAP-RIILADTGRLLMDDSKLYLIMSLRSGESFEQLSSQTTLIPGSQASDERPA 244
Query: 242 EQF 244
Sbjct: 245 SYI 247
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 2/101 (1%)
Query: 255 KMSFSNKSNIFHNYRAETQ-FYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+++ + + +YR Q + P+ + + A + R + +
Sbjct: 406 QIADTYYDDAASDYRVNAQEMHRKFTFPVACLLFFFVGAPLGA-IVRKGGVGTPMVLAVL 464
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I T SG + A + + + L +
Sbjct: 465 IFIIYYVIDTFGLKMINSGQIPVWAGMWLSSAVILPLGAFL 505
>gi|149373007|ref|ZP_01891963.1| hypothetical protein SCB49_11577 [unidentified eubacterium SCB49]
gi|149354367|gb|EDM42934.1| hypothetical protein SCB49_11577 [unidentified eubacterium SCB49]
Length = 515
Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 53/161 (32%), Gaps = 6/161 (3%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
+ IS P I+ ++P LV +++VF E ++ GIS+ + +
Sbjct: 20 DLDISIVLKFLWFYSPRIVTLVLPLSILVTSLMVFGGFAERYEFAAMKSTGISLQRAMRS 79
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
V +LLGI N + E +L + + + QI +
Sbjct: 80 LSVFILLLGITAFFFSNNVIPYSEYKWQNLRRNIQQFKPSMVIAAGQFNQIGDELNIKV- 138
Query: 165 GAKKILPENHIWEDFTSITID---KKNKIIHRKDADLAIIY 202
A+K E D N +I A+ +
Sbjct: 139 -AEKSGENGEFLEGVIIHRKDMKKPSNNLIVTI-AEKGELT 177
Score = 52.5 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
+ E + IV+ + + I A + R + + + + I K+
Sbjct: 341 KYEIALHEKIVLGFACIILFFIGAPLGA-IIRKGGMGLPMVVAVVLFLTYHFIGIFAKNS 399
Query: 329 GKSGILLPVAAALIPVILTISLSILI 354
+ G + P I ++ + LSI +
Sbjct: 400 AEDGSIHPFLGTWISTLIMLPLSIWL 425
>gi|89256769|ref|YP_514131.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
holarctica LVS]
gi|115315160|ref|YP_763883.1| hypothetical protein FTH_1434 [Francisella tularensis subsp.
holarctica OSU18]
gi|167010910|ref|ZP_02275841.1| hypothetical protein Ftulh_09393 [Francisella tularensis subsp.
holarctica FSC200]
gi|254368060|ref|ZP_04984080.1| hypothetical protein FTHG_01381 [Francisella tularensis subsp.
holarctica 257]
gi|254369660|ref|ZP_04985670.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
holarctica FSC022]
gi|89144600|emb|CAJ79919.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
holarctica LVS]
gi|115130059|gb|ABI83246.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica OSU18]
gi|134253870|gb|EBA52964.1| hypothetical protein FTHG_01381 [Francisella tularensis subsp.
holarctica 257]
gi|157122619|gb|EDO66748.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
holarctica FSC022]
Length = 360
Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 55/365 (15%), Positives = 116/365 (31%), Gaps = 36/365 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + + I +P +
Sbjct: 2 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYS-QGLGIDSIVKFVILTIPENV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL----LNPFVVGSILLGIFTVLV 119
+ P + I+ F +E+ ++ A GI+ Q+ L P V +I + + TV+
Sbjct: 61 SLVAPIAIFLAIIICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTI-ITLITVMY 119
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWED 178
+NP++ I + II P I IG K + D
Sbjct: 120 LNPLSKQTLDIYRASLSAKALLSSITDQKII-----KAPDGKIIYIGNKS----GNTLSD 170
Query: 179 FTSITIDKKNKIIHRKDADLAIIYND----KVKLKKVVEYQYGRIPIDKNS-------TT 227
++ A A I +D + V Y + + T
Sbjct: 171 VFLYQNTPQDGEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYT 230
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ D ++ + E +F++K+N + +F I + ++
Sbjct: 231 IFDNSDRDYNHNRVDRLYMHTLIE-----NFNDKNNG---TAYKAEFLGRINNAISVIVS 282
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
+L+A ++ R N+ + + + + + + + +P I
Sbjct: 283 SLLALALCRLRPRQNKYAK-LLPSVVVLAIYLCTNMFINTLMANSSVPVWIGFWLPHIFF 341
Query: 348 ISLSI 352
++
Sbjct: 342 TIFAV 346
>gi|56479504|ref|YP_161093.1| hypothetical protein ebA7173 [Aromatoleum aromaticum EbN1]
gi|56315547|emb|CAI10192.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 359
Score = 66.8 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/362 (11%), Positives = 132/362 (36%), Gaps = 23/362 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVL-AATRVP 60
I R + + ++ + ++ + L + Q G LP+ ++ + +R+P
Sbjct: 2 IFSRALQREFFQSAAGVFVALFAILITVVLIRLLGQAAGGRLPSDAVLALIGFGSLSRLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ + ++ R SE+V+ A G+ + + P + ++ + + V
Sbjct: 62 ----IVLSLTVFIAVLLSLSRSYRDSEMVVWFASGLPLTAFIRPVLRFALPIVLTIAAVT 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A + + + D + + + Q+ F+ + E+ +
Sbjct: 118 LFVAPWAQLKSAEYQARIDSRNDASRIAPGVFRESVGAQRVFFV--ETGAGEDGKVRNV- 174
Query: 181 SITIDKKNKIIHRKDAD----LAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
++ +K ++ A+ + V L+K Y+ + + +
Sbjct: 175 FVSTEKDGRLDVIVSAEGSLRTDAEGDRFVVLEKGRRYEGEPGSPEYRVLEFDRYSVLVE 234
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
++ + + S ++ ++ R + I +P+ + + L+A +S
Sbjct: 235 EREAAGPASRTSTTPTLELLAD-------PTPRKLGELLGRIGMPVAALLLALMAIPLSF 287
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R+ + + + I + + I++ +++ G L A +P ++ +++ + ++
Sbjct: 288 VNPRAGR-ANNLLFAILTYLVYSNAISVFQAWVSQGRLRFELAVWLPHVVVLAV-LALMF 345
Query: 357 QK 358
+
Sbjct: 346 YR 347
>gi|260551090|ref|ZP_05825294.1| permease YjgP/YjgQ family protein [Acinetobacter sp. RUH2624]
gi|260405857|gb|EEW99345.1| permease YjgP/YjgQ family protein [Acinetobacter sp. RUH2624]
Length = 366
Score = 66.8 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 39/307 (12%), Positives = 96/307 (31%), Gaps = 7/307 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + S + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFG-VAAQGRLDASILFSIIGYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL + +++ + +++ +
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + L + I A + + +D
Sbjct: 121 TPWGLREFEKLTTTQAVRTGFDLVR----PREFISSGPYTIYAGSLSEDRKNLKDIFFYQ 176
Query: 184 I-DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
K+ K A A VV+ GR + ++ E
Sbjct: 177 RAAKEGKPDVMILAKEATRVEVANDTANVVDLVQGRRYEIYPGQPKYTQAEFQSYRLRLE 236
Query: 243 QFASRSF-YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
F ++ + S ++ ++ + + P ++ +++ ++S R
Sbjct: 237 NDKDVKFESSDVEALPTSKLLAKTNDPVIRSELGWRLFGPFTIIVALMMSVALSEVSPRQ 296
Query: 302 NQPRIIV 308
+ ++
Sbjct: 297 GRYYRLI 303
>gi|46198338|ref|YP_004005.1| hypothetical protein TTC0030 [Thermus thermophilus HB27]
gi|46195960|gb|AAS80378.1| hypothetical membrane spanning protein [Thermus thermophilus HB27]
Length = 336
Score = 66.8 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/350 (13%), Positives = 110/350 (31%), Gaps = 20/350 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L + L+ DL + + +L R+P +
Sbjct: 2 LGRYVLREVLVPYLVGVFLFAALL-TFDLLSSLSGVLLSRGVGAREVGLLVLYRLPWTLS 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + +V L R SEL + A G+ LL P V+ ++ + + +L + +
Sbjct: 61 LALPLGLVFAVLVGLAGLIRRSELKAAYAAGVPPLALLRPLVLLALAVSLLNLLNLAELR 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ L+ + + + F PE + +
Sbjct: 121 PRSQEAYDRLLGRILYGEGGASGVLRRQVYAPPGLGVYFAEEVYPEPEGNRLRGVRVV-- 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D++ ++ A+ + + +LK V P + + + +
Sbjct: 179 DERGRVYS---AEEGLWDEEGWRLKGYVVEGEEVRPFE-GVLPFPARFRPKESLGSRDPY 234
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S E+ + ++ F+ + + ++ A+ + +
Sbjct: 235 DSTPLEELWARAQVEPEA--------RFAFHRRLAD---ALGGLVLGAAAAALGLSLREA 283
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ F Y + T+ + + P+ A +P + +L+ +
Sbjct: 284 AWAFLGVVLLIFGYYVLWTLAAQLAR-YDVSPLLA-YLPDLFYGALAGAL 331
>gi|154174487|ref|YP_001408138.1| permease YjgP/YjgQ [Campylobacter curvus 525.92]
gi|153793102|gb|EAU00183.2| permease YjgP/YjgQ [Campylobacter curvus 525.92]
Length = 342
Score = 66.8 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 50/358 (13%), Positives = 127/358 (35%), Gaps = 30/358 (8%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ +Y +L T +++ ++ +I + + L +P ++
Sbjct: 4 VNKYLLYNFLGTFASLFSTLFLIMSIVFFIQIARVTSYI-EITFGELLKLYMFMLPRVLL 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P V + F L++ +E ++ +G S + F+ S L ++V +
Sbjct: 63 FVVPIAFFVALAMTLFRLSKENESIVIFTLGSSPNSIAKFFLAFSAALSALLLIVAIVMI 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI-- 182
++ + I K + + +++G++ I+++
Sbjct: 123 PIASELNSNFIDYKKT--VAKLNLKPTQFGQKFSDWMVYVGSEGSDENGTIYKNIVMFNP 180
Query: 183 TIDKKNKIIHRKDADL-AIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
I ++I ++A + N ++ L Y R + S ++ I+ +K +
Sbjct: 181 FIKDSQRLIVAQNAKMINTKSNIELSLNNGKIYDM-RGKVYHQSNFKSMTIRTAQSEKIN 239
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ + + ++ ++ + + Y L+ L +A TL A S + R
Sbjct: 240 DVDSIKEYW---------LEAKTSTKRKKDLSTYVLVA--LFPLATTLFAISFGIVTYRY 288
Query: 302 NQPRIIVAY-GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + + GI F +T+I ++ P+ A IP + + + K
Sbjct: 289 EKGAVYLGTFGIL--FGYFTLIMLLSP-------RPIIA--IPGVFAAFFAAGVWFYK 335
>gi|257465009|ref|ZP_05629380.1| hypothetical protein AM202_00770 [Actinobacillus minor 202]
gi|257450669|gb|EEV24712.1| hypothetical protein AM202_00770 [Actinobacillus minor 202]
Length = 309
Score = 66.8 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/248 (12%), Positives = 73/248 (29%), Gaps = 11/248 (4%)
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ Q ++P + ++ SE+ + RA GI L + SI V +
Sbjct: 1 MAQLMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLAKVALFLSIFTTALAVYNVF 60
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +L+ + K N +M + I + + D
Sbjct: 61 WLTPWSINKQSELLAEAKANPRFSALSAGQFMTAGG----YVLFIDNINYDQNKLNDIYV 116
Query: 182 ITIDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
D++ K AD + L + T ++ F+ +
Sbjct: 117 FQPDQQKKNRPSVIVADSGELKG----LPNGDQILTLENSTRYEGTAKVADFRISHFENY 172
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNY--RAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + K + ++ + + + A+ + + + M L+A +S
Sbjct: 173 TAYLGHQDVDSDEKLVQRADWAKLVADKSPEAQAELQWRFALIFATPLMALLAVPMSSVN 232
Query: 299 SRSNQPRI 306
R +
Sbjct: 233 PRQGRFAK 240
>gi|148261611|ref|YP_001235738.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
gi|146403292|gb|ABQ31819.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
Length = 386
Score = 66.4 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 52/361 (14%), Positives = 114/361 (31%), Gaps = 27/361 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAA--TRV 59
P L RY F+ L LG + LV++ + + + + +S L V
Sbjct: 19 PTRLDRYVFRQLLIGLAVSTLGLVALVWL---TQSLRFIQLIIQHGLSPVVFLHLTGLLV 75
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + I+P +V + V+ L EL + RA G+S + P + ++L + +
Sbjct: 76 PSFVAVILPITCFIVILFVYARLAADRELTVMRASGMSDAAIARPALALAMLTMLACWGL 135
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ S ++ + + I I + ++ + +
Sbjct: 136 NVWLVPSTLARFTHFESIIRNQVAAFLLEPGVFTPIP---GHITVYVQRRDHD-QVLHGI 191
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+K + A + + + T + I
Sbjct: 192 VIQDARQKGEPAT-ILARSGRLIDGP---DGPEVLLLDGSREQVDPKTGRLNILSFRRNL 247
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET----------QFYFLIVIPLMLVAMTL 289
S + ++ K S + + +FH A + + I P +++ +
Sbjct: 248 ISLAKPTGVTRKLAPKTSEATMTQLFHAGAAHVPPPVQRRWREEAWRRIASPFAVLSYAV 307
Query: 290 IAASVSLE-FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG--KSGILLPVAAA-LIPVI 345
IA L R + +F L + ++ ++G++ + A L P +
Sbjct: 308 IALLSVLRSPFRRQGGAAALVAAVFIVMGLVALELGTENLAARQNGLIPLIFAVTLGPAL 367
Query: 346 L 346
+
Sbjct: 368 V 368
>gi|312885912|ref|ZP_07745544.1| permease YjgP/YjgQ family protein [Mucilaginibacter paludis DSM
18603]
gi|311301719|gb|EFQ78756.1| permease YjgP/YjgQ family protein [Mucilaginibacter paludis DSM
18603]
Length = 463
Score = 66.4 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 11/165 (6%)
Query: 18 LYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIV 77
++ LL + ++ DL + L + +P L+ +I+
Sbjct: 1 MFVLLMLFLWKYIDDLI--------GKGFEWYTILELMMYASATNVAMALPLSVLLSSIM 52
Query: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ 137
+ L ELV ++ GIS+ + L P V+ L + + + L+
Sbjct: 53 TYGTLGENYELVAIKSAGISLSRALYPMVIVVAALSVAAFAFSDYMLPVANLKFYSLLYD 112
Query: 138 WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + +N + +K P+ +
Sbjct: 113 ARKQKSASLIKEGVF---NNSFPGYSVRVQKKDPDGQLLHGVMIY 154
Score = 56.0 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 1/87 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R ++ + + + LI A + R + V + + Y I TI +
Sbjct: 348 RRYLIEYQKKFTLSAACLVLFLIGAPLGA-IIRKGGLGLPVVISVVFFLIYYIISTIGEK 406
Query: 328 FGKSGILLPVAAALIPVILTISLSILI 354
K G + PV + + + + + +
Sbjct: 407 SAKDGNISPVLGTWVAIFVLAPIGLFL 433
>gi|242309279|ref|ZP_04808434.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
gi|239524320|gb|EEQ64186.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
Length = 269
Score = 66.4 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/276 (14%), Positives = 94/276 (34%), Gaps = 21/276 (7%)
Query: 93 AIGISIWQLLNPFVVGSILL-GIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIP 151
A+G S ++ P + L+ F +L P A + EK+ + + + + +
Sbjct: 2 ALGYSKSRIFLPIFSIAFLIASAFVLLNATPFAYAKEKVDLIVERGYLGSYKSDLFIKY- 60
Query: 152 WMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKV 211
+ +I KI P E + + +++ +A A + L+
Sbjct: 61 --------DNNYIYFAKIFPLLQSAEGIQVFEV-ENEEVLRIIEAPKATFNEGEWILENA 111
Query: 212 VEYQY------GRIPI---DKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS 262
G+ P+ ++ + K E+ S S + + M+
Sbjct: 112 KITTIQPQLEVGKNPLWVEEQKVYKTLVGFKPKILDNIYEKQGSISIVDAFEAMNLLEGQ 171
Query: 263 NIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTII 322
N + + Y L++ P M + + + +R I I +++ I+
Sbjct: 172 N-INTQKLRASLYVLLLFPFFAPLMMVCLSGFTPNSNRYANLGGITLGMILGILVVWGIL 230
Query: 323 TIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
SG L P + ++P+ + +S + ++
Sbjct: 231 FSFSRLSMSGFLQPEFSVIMPIGILALISAWLFVRL 266
>gi|110634108|ref|YP_674316.1| permease YjgP/YjgQ [Mesorhizobium sp. BNC1]
gi|110285092|gb|ABG63151.1| permease YjgP/YjgQ [Chelativorans sp. BNC1]
Length = 416
Score = 66.4 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 48/328 (14%), Positives = 116/328 (35%), Gaps = 19/328 (5%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++ RY + L L +++V+ + + + S + +A +P +
Sbjct: 25 KVIERYILRRTLAIFAASLAWLLVIVWTTQVLNRLDLVTS-SGQSAATFFTVAFLTLPSV 83
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I+PF+ + +N SELV+ A G ++ P ++ +I+ I + N
Sbjct: 84 VPVIMPFVIGIAVAQTLATMNADSELVVISAAGSPRSTIIWPILIIAIIASIAAFAINNT 143
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + ++ + + ++ + IF+ + LP + F
Sbjct: 144 LEPYSRQKMRTILANANADLITTVLREGSFRKVVDG---IFVQISERLPNGELGGIFVID 200
Query: 183 TIDKKNKIIHRKDADLAIIYNDK---VKLKKVVEYQYGRIPID---KNSTTLNIPIKMDG 236
+ D K+ +R + + + V L+ V+ Q + +S ++ +G
Sbjct: 201 SRDPNLKLAYRAERGATVKRDGGNILVLLEGEVQRQVANGDVSVIRFDSYAFDLSQFTNG 260
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV-- 294
+ R E+++ ++K + + + L + LI +V
Sbjct: 261 EGVPTLFPKDRYLSELLE-PDPNDKFFAKNPQSFRAELHTRFSEWLYPIVFALIGIAVAG 319
Query: 295 ---SLEFSRSNQPRIIVAYGIF---SGF 316
S +R + + G+ +GF
Sbjct: 320 DARSFRETRLHPMVTTLTIGLLVRWAGF 347
>gi|238785038|ref|ZP_04629035.1| Inner membrane protein yjgP [Yersinia bercovieri ATCC 43970]
gi|238714079|gb|EEQ06094.1| Inner membrane protein yjgP [Yersinia bercovieri ATCC 43970]
Length = 364
Score = 66.4 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 52/369 (14%), Positives = 128/369 (34%), Gaps = 31/369 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ ++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLILAALILALGTSALAAVNTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG-----------AKKILPE 172
K +++ + N + ++ +FIG ++ P
Sbjct: 121 GPWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVTGKEFNRVFLAQLRPN 180
Query: 173 NHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
+ + R D +I N + + + RI + +
Sbjct: 181 GNQRPSVVV---ADSGHMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQ 237
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
++ +EQ + + +SN +F++ + + + +V M L+
Sbjct: 238 EVQQNSNVAEQMTMKQLW----------RSNEADA---RAEFHWRLTLIVSVVIMALLVV 284
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
+S+ R + + + + + + + + ++S +G L P+ + + + L+I
Sbjct: 285 PLSVVNPRQGRV-LSMLPAMLLYLIFFLLQSSLRSNAGNGKLDPLL--WMWTVNGVYLAI 341
Query: 353 LILLQKEDG 361
++L DG
Sbjct: 342 AVILNLWDG 350
>gi|149378264|ref|ZP_01895976.1| predicted Permease [Marinobacter algicola DG893]
gi|149357461|gb|EDM45971.1| predicted Permease [Marinobacter algicola DG893]
Length = 352
Score = 66.4 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/315 (13%), Positives = 105/315 (33%), Gaps = 27/315 (8%)
Query: 51 GAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI 110
+ A R P ++ I+P + ++ + + SE+ + A G+S QLL ++GSI
Sbjct: 34 LFQIMAYRFPGFLELILPLGFFIGILLAYGRMYLESEMTVLFACGVSDKQLLMKTLLGSI 93
Query: 111 LLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKIL 170
+ + + ++ G K + + + + + + P S + + +
Sbjct: 94 PVMLVVGAMSLYVSPWGMKKVEGIFNEQRQATEFEM--LAPGRFQSLSSGERVTYTEALS 151
Query: 171 PENHIWEDFTSITIDKKNKIIHRKDADLA------IIYNDKVKLKKVVEYQ--YGRIPID 222
+ E + K + A + + L+ ++ G++ D
Sbjct: 152 EDKRRLEGVFIAEHSEDGKGLTIITAREGSQFIDEETGSRFLVLEDGARFEGLPGQLAYD 211
Query: 223 ---KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
+ L I G ++ E A+ + + ++
Sbjct: 212 VTGFEAYGLKIRSGSAGEKELEEGLATSALMA-------------SDDPEHRAMLHWRFT 258
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
+PL++ +TL+A +S + + + ++ + + + G +
Sbjct: 259 LPLIVPIVTLLAVRLS-RVNPRQGRFFHLLPAMLVYITYLGLLIVARDALEGGKVPEWIG 317
Query: 340 ALIPVILTISLSILI 354
L L + L + +
Sbjct: 318 LLWVHGLFLVLGLWL 332
>gi|56708376|ref|YP_170272.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670846|ref|YP_667403.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis FSC198]
gi|134302361|ref|YP_001122330.1| YjgP/YjgQ permease [Francisella tularensis subsp. tularensis
WY96-3418]
gi|224457506|ref|ZP_03665979.1| YjgP/YjgQ permease [Francisella tularensis subsp. tularensis
MA00-2987]
gi|254370999|ref|ZP_04987002.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254875199|ref|ZP_05247909.1| permease yjgP/yjgQ family protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|56604868|emb|CAG45952.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110321179|emb|CAL09335.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis FSC198]
gi|134050138|gb|ABO47209.1| putative permease YjgP/YjgQ family [Francisella tularensis subsp.
tularensis WY96-3418]
gi|151569240|gb|EDN34894.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254841198|gb|EET19634.1| permease yjgP/yjgQ family protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159995|gb|ADA79386.1| putative permease YjgP/YjgQ family protein [Francisella tularensis
subsp. tularensis NE061598]
Length = 360
Score = 66.4 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 54/365 (14%), Positives = 116/365 (31%), Gaps = 36/365 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + + I +P +
Sbjct: 2 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYS-QGLGIDSIVKFVILTIPENV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL----LNPFVVGSILLGIFTVLV 119
+ P + ++ F +E+ ++ A GI+ Q+ L P V +I + + TV+
Sbjct: 61 SLVAPIAIFLAIVICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTI-ITLITVMY 119
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWED 178
+NP++ I + II P I IG K + D
Sbjct: 120 LNPLSKQTLDIYRASLSAKALLSSITDQKII-----KAPDGKIIYIGNKS----GNTLSD 170
Query: 179 FTSITIDKKNKIIHRKDADLAIIYND----KVKLKKVVEYQYGRIPIDKNS-------TT 227
++ A A I +D + V Y + + T
Sbjct: 171 VFLYQNTPQDGEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYT 230
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ D ++ + E +F++K+N + +F I + ++
Sbjct: 231 IFDNSDRDYNHDRVDRLYMHTLIE-----NFNDKNNG---TAYKAEFLGRINNAISVIVS 282
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
+L+A ++ R N+ + + + + + + + +P I
Sbjct: 283 SLLALALCRLRPRQNKYAK-LLPSVVVLAIYLCTNMFINTLMANSSVPVWIGFWLPHIFF 341
Query: 348 ISLSI 352
++
Sbjct: 342 TIFAV 346
>gi|326405101|ref|YP_004285183.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
gi|325051963|dbj|BAJ82301.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
Length = 374
Score = 66.4 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 52/361 (14%), Positives = 114/361 (31%), Gaps = 27/361 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAA--TRV 59
P L RY F+ L LG + LV++ + + + + +S L V
Sbjct: 7 PTRLDRYVFRQLLIGLAVSTLGLVALVWL---TQSLRFIQLIIQHGLSPVVFLHLTGLLV 63
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
P + I+P +V + V+ L EL + RA G+S + P + ++L + +
Sbjct: 64 PSFVAVILPITCFIVILFVYARLAADRELTVMRASGMSDAAIARPALALAMLTMLACWGL 123
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ S ++ + + I I + ++ + +
Sbjct: 124 NVWLVPSTLARFTHFESIIRNQVAAFLLEPGVFTPIP---GHITVYVQRRDHD-QVLHGI 179
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+K + A + + + T + I
Sbjct: 180 VIQDARQKGEPAT-ILARSGRLIDGP---DGPEVLLLDGSREQVDPKTGRLNILSFRRNL 235
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET----------QFYFLIVIPLMLVAMTL 289
S + ++ K S + + +FH A + + I P +++ +
Sbjct: 236 ISLAKPTGVTRKLAPKTSEATMTQLFHAGAAHVPPPVQRRWREEAWRRIASPFAVLSYAV 295
Query: 290 IAASVSLE-FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG--KSGILLPVAAA-LIPVI 345
IA L R + +F L + ++ ++G++ + A L P +
Sbjct: 296 IALLSVLRSPFRRQGGAAALVAAVFIVMGLVALELGTENLAARQNGLIPLIFAVTLGPAL 355
Query: 346 L 346
+
Sbjct: 356 V 356
>gi|218672884|ref|ZP_03522553.1| putative permease protein [Rhizobium etli GR56]
Length = 380
Score = 66.4 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 44/312 (14%), Positives = 116/312 (37%), Gaps = 16/312 (5%)
Query: 15 KTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVV 74
+ L LL + +++ + + N + + SI A LA +P II ++PF ++
Sbjct: 1 QMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPSIIPVVLPFALVIA 59
Query: 75 NIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDL 134
+N SEL + A G L+ P ++ + ++ +F+ V N + + + +
Sbjct: 60 ITQTLTTMNNDSELTVIDAAGARRSILIRPILLLAAVISVFSFFVDNIVEPRAKTVARQM 119
Query: 135 IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRK 194
I + S +I + +++ K L + F + D ++I+
Sbjct: 120 IAE---TYADLLSSVIEEKTFRKIDEGLYVQISKRLAGRMLKGLFVADERDPAYELIY-- 174
Query: 195 DADLAIIYNDKVKL--KKVVEYQYGRIP----IDKNSTTLNIPIKMDGFQKFSEQFASRS 248
A + + L ++ I+ +S + ++ + + + + + R
Sbjct: 175 YAKEGAVDDTGTTLIMHDGEVHRKTPDGNVSVINFDSYSFDLSDMTENRGQATLKASDRD 234
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII- 307
+ + ++K + + + ++ V L + +++ +RS++ +
Sbjct: 235 LWFLFN-PDPNDKDFTIRPQSYRAELHRRLTDWILPVVFALFSLAIA-GDARSHREARLH 292
Query: 308 -VAYGIFSGFML 318
+ + F
Sbjct: 293 PMVSALAYAFAF 304
>gi|255320991|ref|ZP_05362164.1| permease YjgP/YjgQ family protein [Acinetobacter radioresistens
SK82]
gi|262379919|ref|ZP_06073074.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|255301955|gb|EET81199.1| permease YjgP/YjgQ family protein [Acinetobacter radioresistens
SK82]
gi|262298113|gb|EEY86027.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
Length = 366
Score = 66.4 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 40/294 (13%), Positives = 100/294 (34%), Gaps = 7/294 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + S + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFG-VAAQGRLDASILLSIIGYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + GIS +L + +++ + +++ +
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGISRNRLARLLIPLTLVYMLVQSILMLWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ G + L ++ I A + ++ ++
Sbjct: 121 SPWGIRQFEQLTTSQAVRTGFDLVRPKEFI----SSGPYTIYAGSLSEDHKNLKEIFFYQ 176
Query: 184 IDKK-NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+K K A A VV+ GR + + ++ E
Sbjct: 177 RAEKPGKPDVMILAKEATRVEMMDDSANVVDLVQGRRYEIYPGQPRYSQAEFESYRLRLE 236
Query: 243 QFASRSF-YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ +F + + ++ S + E++ + I +P ++ ++A ++S
Sbjct: 237 NDKTANFESDDVAALTTSKLWEQRADPVVESELGWRIFVPFAIMVALILAMALS 290
>gi|271498968|ref|YP_003331993.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech586]
gi|270342523|gb|ACZ75288.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech586]
Length = 372
Score = 66.4 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 50/359 (13%), Positives = 131/359 (36%), Gaps = 23/359 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ + L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETFKSQVAILFILLLIFFCQKLVRILGAAVD-GDIPTNLVLSLLGLGVPQMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+S LL +V ++L + +
Sbjct: 61 QLILPLSLFLGLLMTFGRLYAESEITVMHACGLSKNVLLKAALVLALLTASLATANVLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + N + + + K+ + +
Sbjct: 121 SPWSSRHQDEVLAEARANPGMASLAEGQF--QQTQDGNSVLFVGKVNGGDFERVFLAQLH 178
Query: 184 IDKKNKIIHRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + AD + + V L K Y+ + D T + G+Q
Sbjct: 179 PRENTRPSVVV-ADKGTVAARGDGSQVVTLSKGTRYEGTAMLRDFRITDFINYQAIVGYQ 237
Query: 239 KFSEQFASR---SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + + SF + + + ++ +F++ + + ++ M ++ +S
Sbjct: 238 QVAVDPTNVEQMSFKTLWRSSDIAARA----------EFHWRLTLIFSVLMMAVMVVPLS 287
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ R + + + + + + + + ++S G L P+ + ++ +SL++L+
Sbjct: 288 VVNPRQGRV-LSMLPAMLLYLVFFLLQSSLRSNAGKGKLDPMVWMWLTNLVYLSLAVLL 345
>gi|261345122|ref|ZP_05972766.1| inner membrane protein YjgP [Providencia rustigianii DSM 4541]
gi|282566810|gb|EFB72345.1| inner membrane protein YjgP [Providencia rustigianii DSM 4541]
Length = 365
Score = 66.0 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 48/355 (13%), Positives = 123/355 (34%), Gaps = 15/355 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATRVPL 61
I+ RY + LK+ L L +++ F +I G +P+ + L +
Sbjct: 2 IIIRYLVRETLKSQLAILFVLLLIFFSQMSIDILGAAVQGNIPSNLVLPLLGLGVPEMAQ 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I + + ++ + L SE+ + A G+ L+ +V ++L + + I
Sbjct: 62 LILPLS---LFLGLLMTYSKLYTESEITVMHACGLGKNVLVKAALVLAVLTALVAIANIT 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++ K N + + + ++ +
Sbjct: 119 WMLPWSSQYKEQVLGDAKANPGLAAMVEGQFKT--TKDNNFVLYIGEVKGNDFKNVFLAQ 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + AD + D ++VV G T L ++ F +
Sbjct: 177 LRTANEQRPSVVV-ADSGYMKEDA-NGRQVVVLDQG---TRYEGTALLRDFRITDFMNYQ 231
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAET--QFYFLIVIPLMLVAMTLIAASVSLEFS 299
R+ K+ +++ E +F++ + I +V M L+ +S
Sbjct: 232 AVVDHRTTEVRTDKVEQKTMMQLWNGNDPEINAEFHWRLTIVFSVVVMALMVVPLSEVNP 291
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
R + ++ + + + + + +++ G + P A + ++L+I++
Sbjct: 292 RQGRVLSMI-PAMLLYLIFFLLQSTLRNSADKGDIDPKYAMWAVNLGYLALAIVL 345
>gi|169634642|ref|YP_001708378.1| hypothetical protein ABSDF3307 [Acinetobacter baumannii SDF]
gi|169797503|ref|YP_001715296.1| hypothetical protein ABAYE3539 [Acinetobacter baumannii AYE]
gi|184156573|ref|YP_001844912.1| permease [Acinetobacter baumannii ACICU]
gi|213155683|ref|YP_002317728.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB0057]
gi|239502071|ref|ZP_04661381.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB900]
gi|260556395|ref|ZP_05828614.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii ATCC
19606]
gi|301512956|ref|ZP_07238193.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB058]
gi|301594832|ref|ZP_07239840.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB059]
gi|169150430|emb|CAM88327.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter baumannii AYE]
gi|169153434|emb|CAP02576.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter baumannii]
gi|183208167|gb|ACC55565.1| predicted permease [Acinetobacter baumannii ACICU]
gi|193076099|gb|ABO10703.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
gi|213054843|gb|ACJ39745.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB0057]
gi|260410450|gb|EEX03749.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii ATCC
19606]
Length = 366
Score = 66.0 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/198 (14%), Positives = 63/198 (31%), Gaps = 6/198 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + S + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFG-VAAQGRLDASILFSIIGYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL + +++ + +++ +
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + L + I A + + +D
Sbjct: 121 TPWGLREFEKLTTTQAVRTGFDLVR----PREFISSGPYTIYAGSLSEDRKNLKDIFFYQ 176
Query: 184 I-DKKNKIIHRKDADLAI 200
K+ K A A
Sbjct: 177 RAAKEGKPDVMILAKEAT 194
>gi|251771423|gb|EES52002.1| permease YjgP/YjgQ family protein [Leptospirillum
ferrodiazotrophum]
Length = 377
Score = 66.0 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 66/328 (20%), Positives = 110/328 (33%), Gaps = 16/328 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ RY F L LL +IL+ I N + S+ L + P
Sbjct: 2 KIIHRYLFLELLTPFFLSLLVLVILLLTQQALLIMNLLVNK-GLSVETVFRLLSMIFPQF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ IIP L + F L E++ +A GIS+ +LL P + + +G T ++
Sbjct: 61 LSMIIPVSVLTASTATFHRLASDGEIIAFKASGISLSRLLLPLFLFA-AIGFGTNFYLSL 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
A E G+ L K+ S I +N I +K +P +
Sbjct: 120 KA--METQGLSLQDLLVRVFQKKLSLAIKPQSFNNFMGRFIIYVEK-MPTLSHIDGVFIY 176
Query: 183 TIDKKNKIIHRKDADLAIIYND------KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+KK A I N+ ++KL +Q G + ++ I
Sbjct: 177 QKEKKTGPRTVIFAQSGEILNERHPPGLRLKLSHGTFFQEGSAQQYIRFGSYDLTIT--- 233
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ +S EI +++ S S +RA Y P + +
Sbjct: 234 GHHTDDSIRVKSIDEIRAEIARSP-SPDPSLFRALEDRYKNYTYPFSCFFFAFLGIPYGI 292
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITI 324
RS + V + + Y + TI
Sbjct: 293 YTMRSGRLAGFVFATVTV-ILFYMMNTI 319
>gi|55980367|ref|YP_143664.1| hypothetical protein TTHA0398 [Thermus thermophilus HB8]
gi|55771780|dbj|BAD70221.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 336
Score = 66.0 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 46/350 (13%), Positives = 110/350 (31%), Gaps = 20/350 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + L L + L+ DL + + +L R+P +
Sbjct: 2 LGRYVLREVLVPYLVGVFLFAALL-TFDLLSSLSGVLLSRGVGAREVGLLVLYRLPWTLS 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + +V L R SEL + A G+ LL P V+ ++ + + +L + +
Sbjct: 61 LALPLGLVFAVLVGLAGLIRRSELKAAYAAGVPPLALLRPLVLLALAVSLLNLLNLAELR 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ L+ + + + F PE + +
Sbjct: 121 PRSQEAYDGLLGRILYGEGGASGVLRRQVYAPPGLGVYFAEEVYPEPEGNRLRGVRVV-- 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
D++ ++ A+ + + +LK V P + + + +
Sbjct: 179 DERGRVYS---AEEGLWDEEGWRLKGYVVEGEEVRPFE-GVLPFPARFRPKESLGSRDPY 234
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S E+ + ++ F+ + + ++ A+ + +
Sbjct: 235 DSTPLEELWARAQVEPEA--------RFAFHRRLAD---ALGGLVLGAAAAALGLSLREA 283
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ F Y + T+ + + P+ A +P + +L+ +
Sbjct: 284 AWAFLGVVLLIFGYYVLWTLAAQLAR-YDVSPLLA-YLPDLFYGALAGAL 331
>gi|16125936|ref|NP_420500.1| hypothetical protein CC_1691 [Caulobacter crescentus CB15]
gi|221234699|ref|YP_002517135.1| hypothetical protein CCNA_01762 [Caulobacter crescentus NA1000]
gi|13423102|gb|AAK23668.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220963871|gb|ACL95227.1| hypothetical membrane spanning protein [Caulobacter crescentus
NA1000]
Length = 379
Score = 66.0 bits (160), Expect = 8e-09, Method: Composition-based stats.
Identities = 44/308 (14%), Positives = 111/308 (36%), Gaps = 15/308 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY F+ L TL + L + + + E S + +P ++
Sbjct: 3 LIERYLFRQLLGPTLLATAALVALALLARSLSEFDVLVE-QRQSALVFLKIILLALPQLL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P V +V L+ E+V+ A G+S W++++P + +++ + +++ +
Sbjct: 62 GIMMPLALFVAALVALNRLHTEQEIVVCFAGGMSRWRVISPAMRLAVIAALISLISGLWL 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + Q K + Q + P + + A+ I +N I ++
Sbjct: 122 QPWSARQIRETAFQIKTDVAATLVQPG---QFTEPGPGLTVYAQSIDRDNKI-QNLFIHQ 177
Query: 184 IDKKN--KIIHRKDADLAIIYND-KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
++A++A + + ++ Q+ R + + ++ +
Sbjct: 178 ELPNGAASTYSSREAEIATRKGEPVLIMRHGSNQQFSRDGVLQYTSFDEYTFDLSSLFHS 237
Query: 241 SEQFASRSFYEIIKKM---SFSNKSNIFHNYRAETQFYFLIVIPL---MLVAMTLIAASV 294
E + ++ + + + + + + PL L++M L AA +
Sbjct: 238 DELLHYKIADRYPHELFFPDLTQEWEQRNKDKLLAEGHSRFAGPLYNIALMSMAL-AAVL 296
Query: 295 SLEFSRSN 302
FSR
Sbjct: 297 GGSFSRMG 304
>gi|332524894|ref|ZP_08401081.1| putative transmembrane protein [Rubrivivax benzoatilyticus JA2]
gi|332108190|gb|EGJ09414.1| putative transmembrane protein [Rubrivivax benzoatilyticus JA2]
Length = 358
Score = 66.0 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 46/362 (12%), Positives = 121/362 (33%), Gaps = 42/362 (11%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R + + TL +L ++ +F+I P + +A +P ++
Sbjct: 3 RELARTF-GATLVVILTIVLTMFLIRTIGQAAGGVVAPQDVVLLLGYVALGHLPTMLA-- 59
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
V +V + R SE+VI A GI + + + P + S + + ++ +
Sbjct: 60 --LSLFVAVVVTLGRMYRDSEMVIWFAGGIGLSRFVRPVLRTSWPVLLVIAALLLFVWPW 117
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
G + ++L Q+++ D + + ++ ++ E + + +
Sbjct: 118 GNRNSLELRQRYEQRSDLSRVTPGVF--QTSSDGSRVFFIERDTREGADARNV--FIVAQ 173
Query: 187 KNKIIHRKDADLAIIY----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM-------D 235
+ A + + V L++ +K ++ + +
Sbjct: 174 TGETESVTSARSGRLERDGDDRFVVLERGQRNDVDLKTGEKAQSSFETYRVLADEKRARE 233
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA--MTLIAAS 293
++ + + + + + + F L+ A M L+
Sbjct: 234 AERQPPKAMDTLDLLQDPTRPNQGELTWRFG---------------LLTGAGNMLLLGIG 278
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYT-IITIMKSFGKSGILLPVAAALIPVILTISLSI 352
++ R ++ GF++Y +I + +++ SG L A + V+ + +I
Sbjct: 279 LAATNPRRASNWNLLLA--LLGFVVYFNLINLSQAWVASGRL--GMGAALAVVHGSAFAI 334
Query: 353 LI 354
+
Sbjct: 335 AL 336
>gi|152993636|ref|YP_001359357.1| hypothetical protein SUN_2059 [Sulfurovum sp. NBC37-1]
gi|151425497|dbj|BAF73000.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 361
Score = 66.0 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 58/361 (16%), Positives = 126/361 (34%), Gaps = 27/361 (7%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
+RY K+Y+K L L G ID + ++ NY I + +
Sbjct: 11 FRYLAKHYIKNLLAILFGLSFAFAAIDYFQYTEELQGSWNYKILYIFYMWQ----EALGL 66
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ P + I+ + + + A G + +L +P ++ T V + T
Sbjct: 67 LYPLAIVFAVIMTKLTFVKQNTMGALHAFGYTKKRLFSPV----FVIASLTYAVFIYLHT 122
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ D N + + + + D F+ KK+ P + T +
Sbjct: 123 TEFSYAKDKANMLLKNQVHAYNVNDMFFKYN----DTFVYIKKLNPIVKKIKGITIFKV- 177
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVE----YQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
++ + A +A+ ++ + YQ G + +I K
Sbjct: 178 AGYQVRYTIKAPVAVFNGEEWIAQNATVKTHIYQNGELVRYSMDQKESIATLHGYKPKII 237
Query: 242 EQF------ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
E Y K + + + + Y +++PL +A+ LI
Sbjct: 238 ESLYEGKALNIIDAYNTWKLLEIQH----LDSDKIRATIYNKVIVPLFALALLLILFFKL 293
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+R ++VA+ + F+++ ++ ++ G +G+L P A++P++L +I +
Sbjct: 294 PFHARMMNFGVVVAFSLGVTFLIWGVLFGLEQIGLNGVLKPEFTAVMPIVLLWLYAIYVY 353
Query: 356 L 356
Sbjct: 354 F 354
>gi|187931969|ref|YP_001891954.1| hypothetical protein FTM_1332 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187712878|gb|ACD31175.1| conserved hypothetical protein [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 360
Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 16/207 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + + I +P +
Sbjct: 2 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYS-QGLGIDSIVKFVILTIPENV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL----LNPFVVGSILLGIFTVLV 119
+ P + ++ F +E+ ++ A GI+ Q+ L P V +I + + TV+
Sbjct: 61 SLVAPIAIFLAIVICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTI-ITLITVMY 119
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWED 178
+NP++ I + II P I IG K +I D
Sbjct: 120 LNPLSKQTLDIYRASLSAKALLSSITDQKII-----KAPDGKIIYIGNKS----GNILSD 170
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDK 205
++ A A I +DK
Sbjct: 171 VFLYQNTPQDGEYKVMTAPTAKIVSDK 197
>gi|169837524|ref|ZP_02870712.1| Hypothetical membrane-spanning protein [candidate division TM7
single-cell isolate TM7a]
Length = 125
Score = 65.6 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
+ +FY+ I L M LI S+ + R + + + G+ Y I T
Sbjct: 30 GADSLNLRIEFYYRISFALSSFVMCLIGLSLGSRYVR-GGAALNIGLSVIIGYAYYGIST 88
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILILLQKE 359
I++S +G + AA IP+I+ + I + E
Sbjct: 89 ILRSMAVAGTVPIYAACFIPLIVFFVVGIKLFRDSE 124
>gi|167621692|ref|YP_001672200.1| hypothetical protein Caul_5426 [Caulobacter sp. K31]
gi|167351815|gb|ABZ74541.1| conserved hypothetical protein [Caulobacter sp. K31]
Length = 230
Score = 65.6 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 5/148 (3%)
Query: 54 LAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLG 113
+AA +P + +P + +V L+ +SE+ A G S+ +++ PFVV +LLG
Sbjct: 1 MAANLLPHYLGLALPVAFFIALFIVITTLSDSSEIDALLAGGRSLTRIVAPFVVIGVLLG 60
Query: 114 IFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
+F+V+V + ++ G + + + I A + +
Sbjct: 61 LFSVIVFGYLQPYSRYAFRSVMHAAITAGWNGRLPG----RAFVEDGEQLITADESVAAG 116
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAII 201
D + A A +
Sbjct: 117 QALMGIFIKRPDANKR-EEVIAASSASL 143
>gi|257461390|ref|ZP_05626486.1| ribonuclease PH [Campylobacter gracilis RM3268]
gi|257441113|gb|EEV16260.1| ribonuclease PH [Campylobacter gracilis RM3268]
Length = 343
Score = 65.6 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/357 (13%), Positives = 116/357 (32%), Gaps = 31/357 (8%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY F ++ + I++ ++ +I + + S L +P I+
Sbjct: 6 RYLFSNFVGSFASLFSTLFIIMSIVFFLQIAR-ITSFIEINFSELVKLYLFMLPRILIFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P V + F L++ +E ++ IG + +++ F + + L + + V +
Sbjct: 65 VPIAFFVALSISLFRLSKENETIVIFTIGYATRKIVLFFGISAALCSLALLFVSLFMMPI 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
E + + I K + + +FI +++ + +++D
Sbjct: 125 AENLKDNFIDYKKISA--TLNIKSNEFGQKFSDWLVFIDSQENNGTSTLYKDLVLYNPGG 182
Query: 187 KNKIIHRKDADLAIIYND----KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
A N+ L Y G + ++ ++ +
Sbjct: 183 SQDHERMIVARSGEFKNENASFSAMLHDGKIYTMGGDQWHVSEFE-SLTLRTQSDRNIRG 241
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
++ ++ R E Y L+ L +A L A S+ + R
Sbjct: 242 GGGVIGYW---------SEMGGSEKRRKEFSIYTLVS--LFPLASFLFALSLGIVTYRYE 290
Query: 303 QPRIIVAY-GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + G+ F + +I ++ P A +PV ++L +L +
Sbjct: 291 KGFVYAGIFGVL--FSYFALIMLLSK-------HPSIA--LPVTFGVTLIASLLYYR 336
>gi|90419502|ref|ZP_01227412.1| possible permease [Aurantimonas manganoxydans SI85-9A1]
gi|90336439|gb|EAS50180.1| possible permease [Aurantimonas manganoxydans SI85-9A1]
Length = 392
Score = 65.6 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 60/365 (16%), Positives = 130/365 (35%), Gaps = 26/365 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY FK L +++V+++ + + + S +A +P +
Sbjct: 3 ILERYIFKRAFVYAASSLTSLVLIVWIVQALSRIDVVKTSASA-ASNIFWIALMLLPDLF 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++PF L+ I +LN SE + A G S + P V +L G+ +L+ N +
Sbjct: 62 AGVLPFALLIGAIQALNSLNSDSERAVISAAGASQAVIARPIVALGLLGGLIMLLIGNVV 121
Query: 124 ATSG--------EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+ I D+I + G ++ + I + + ++ +
Sbjct: 122 GPASMSAFQNGIRSINADMITLFLKPGRFEQVQDGIVISIGDVNGATV---ESLVIADTR 178
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI--PIK 233
++ KII + L ++++ ++ + + I + L P
Sbjct: 179 DPASDLTYFAREAKIIDEDASSLLLLFDGQLHRRNTADNSVSVIQFQTYAFDLAALRPAT 238
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFH---NYRAETQFYFLIVIPLMLVAMTLI 290
+ + + SE+ + + + + + F R L +A L
Sbjct: 239 DNSWVRASERSTAALIWPDPNDGLYQERPHSFTEELTDRMTNW--------LFAIAFVLW 290
Query: 291 AASVSLEF-SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
A V+ + + + G+ G +L + S + G+ V + L+P+ +
Sbjct: 291 AIVVAGQPSTNRQGTGPAMTVGLCGGLVLKAAGFVTLSQIEQGVFWVVISYLLPLAAIVL 350
Query: 350 LSILI 354
S+LI
Sbjct: 351 NSVLI 355
>gi|91788272|ref|YP_549224.1| permease YjgP/YjgQ [Polaromonas sp. JS666]
gi|91697497|gb|ABE44326.1| permease YjgP/YjgQ [Polaromonas sp. JS666]
Length = 376
Score = 65.6 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/318 (13%), Positives = 109/318 (34%), Gaps = 23/318 (7%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
K ++ L+ + +V I L Q + S + A + I+
Sbjct: 7 IRKELARSFGATLVVLVTIVMTIVLIRTLGQASR-GSISPQDVMLFMAYSALGRLPTILT 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ + + R SE+V+ G + L P + + + L+ +
Sbjct: 66 LSLFIAMVSTLSRMYRDSEMVVWFTSGQGLGGFLKPLFRFAWPVLLVIALMALFVWPWAN 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW-------EDFTS 181
+ D+ ++ GD + + + S+ + FI ++ + +S
Sbjct: 126 QQTKDMQNRYAQRGDLNRVAPGQFQESSSGNRVFFIDRDLASEQSSSNVFIAATEKGKSS 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+T + +I R DA ++ + +L+ VV +I + T + +
Sbjct: 186 VTTARSGRIETRGDAQFLMLEKGQ-RLENVVGQAALKISDFEEYGTRTGDSA--YLGERT 242
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S +IK+ + SN + + + + + V ++A +++ R
Sbjct: 243 PEAKLLSTRSLIKEPTRSNLG----------ELAWRLGLAMAAVNFVILAVALASVNPRG 292
Query: 302 NQPRIIVAYGIFSGFMLY 319
+ ++ + F++Y
Sbjct: 293 GRSGNMIF--VLLTFVVY 308
>gi|326408706|gb|ADZ65771.1| permease YjgP/YjgQ family protein [Brucella melitensis M28]
gi|326538430|gb|ADZ86645.1| permease YjgP/YjgQ family protein [Brucella melitensis M5-90]
Length = 388
Score = 65.6 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 51/353 (14%), Positives = 115/353 (32%), Gaps = 23/353 (6%)
Query: 16 TTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVN 75
L A+ + + + + + N + + ++ +P I ++PF ++
Sbjct: 1 MFFAVLGAAVGITWTVQVLQRINFLTT-SGQTFQTIVQFSSLLIPSAIPLVMPFALIIAI 59
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG-------- 127
+N+ SELV+ A G ++ P ++ + + + + L+ N +
Sbjct: 60 TQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANYVEPYARINMRAMI 119
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
DL+ G +K ++QI+ + D IG I D I
Sbjct: 120 ANASADLMHVIIQEGTFRKLADNLYIQIAERRADGSIGGLFIADSCDPTLD--LIYYAAD 177
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGFQKFSEQFA 245
I D+ ++ N +V+ + V + I D + LN D ++
Sbjct: 178 GAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGDDFVIFAKDRPL 237
Query: 246 SRSFYEIIKKMSFSNKSNIFHN---YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + + R Y LI ++A+ + S S +R +
Sbjct: 238 TYLLNPDSNDPMLQTRPLTYKAELHRRFTQWIYPLI---FAMIALAIAGDSRSHREARVS 294
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
++ + Y + L+P+++ + ++L
Sbjct: 295 ASFSAISTALLV----YWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 343
>gi|149194453|ref|ZP_01871550.1| hypothetical protein CMTB2_07626 [Caminibacter mediatlanticus TB-2]
gi|149135628|gb|EDM24107.1| hypothetical protein CMTB2_07626 [Caminibacter mediatlanticus TB-2]
Length = 338
Score = 65.6 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 77/221 (34%), Gaps = 15/221 (6%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + YLK + L+G +L ++D + ++ N + I +
Sbjct: 5 YILRNYLKNFVITLIGFALLFVLVDYSFNFAKLPNSSNLQTLYIFYVFI----DSIFILY 60
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + ++ + + +ELV ++G +++L P + S+ I + + +
Sbjct: 61 PLALVFAFLLTLNKMIKFNELVSFYSLGFKPFKILKPIIYFSLFFFILIMYLQSTKIAYV 120
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ + + Q + +++ +N + K++ P D + K
Sbjct: 121 NQYAKAIKN------NMQLKNKNLFLKYNN----SVVYIKELNPILKEAYDVKIFVV-KD 169
Query: 188 NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
NK+I A + + K V + DK L
Sbjct: 170 NKLIKIIYTKKAKFFKNHWISNKAVITTLSKDRWDKEEKKL 210
>gi|332969352|gb|EGK08377.1| YjgP/YjgQ family permease [Kingella kingae ATCC 23330]
Length = 370
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 51/365 (13%), Positives = 131/365 (35%), Gaps = 36/365 (9%)
Query: 11 KYYLK-TTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAV--LAATRVPLIIQQII 67
K ++K TTL + +++ ++ + N +G + S++ AV L V + ++
Sbjct: 5 KQFIKETTLVAIGIFSVVLAILLFTQGVNMLGRAASGSVAIDAVGALIGFWVLGMTPLLL 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
+ + V R SE+ I + G+ + Q + P + ++ L + + + +
Sbjct: 65 VLTAYISILTVLTRYWRDSEMAIWLSSGLGLKQWIKPVLTFALPLAMLVAAMQLFVLPNA 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
E + + K + + Q + ++ E +D+K
Sbjct: 125 ELRSREYGELLKQKQNLSLIEQGT-FAELGKQNNRVYFVEQFDAEVGEMSRLFIREVDEK 183
Query: 188 NKIIHRKDADLA------------IIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ A ++ N + + ++ + +N K+
Sbjct: 184 GR-DSVVFAQSGHMKLEADNRRVLVLQNGYRYTGNAGQGDFEQVSFQELQLVINTAPKLI 242
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
S++ N + + + + I +P+ ++ ++L+A +S
Sbjct: 243 EPINHRRTIPSQNLI-------------GSDNPQYQAELMWRISLPITVILLSLLAIPIS 289
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTII--TIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R+ +V + GF L+ T+++ + G + P A L+P+ + ++ I
Sbjct: 290 YFNPRTGNSYHVV---VAVGFFLFYQNGLTLLRDAVEDGKI-PFWAGLLPMHIIMAACIF 345
Query: 354 ILLQK 358
+L++
Sbjct: 346 VLMKM 350
>gi|251791280|ref|YP_003006001.1| permease YjgP/YjgQ family protein [Dickeya zeae Ech1591]
gi|247539901|gb|ACT08522.1| permease YjgP/YjgQ family protein [Dickeya zeae Ech1591]
Length = 370
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/359 (13%), Positives = 131/359 (36%), Gaps = 23/359 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ + L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETFKSQVAILFILLLIFFCQKLVRILGAAVD-GDIPTNLVLSLLGLGVPQMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+S LL ++ S+L + +
Sbjct: 61 QLILPLSLFLGLLMTFGRLYAESEITVMHACGLSKSVLLKAALLLSLLTASLATANVLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ Q + N + + + K+ + +
Sbjct: 121 SPWSSRHQDEVLAQARANPGMASLAEGQF--QQTQDGNSVLFVGKVNSGDFERVFLAQLH 178
Query: 184 IDKKNKIIHRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ + AD + + V L K Y+ + D T + G+Q
Sbjct: 179 PRENTRPSVVV-ADRGTVAARGDGSQVVTLSKGTRYEGTAMLRDFRITDFINYQAIVGYQ 237
Query: 239 KFSEQFASR---SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ ++ S + + + ++ +F++ + + L ++ M ++ +S
Sbjct: 238 PVAVDPSNVEQMSLKTLWESSDIAARA----------EFHWRLTLILSVLVMAVMVVPLS 287
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ R + + + + + + + + ++S G L P+ + ++ ++L++++
Sbjct: 288 VVNPRQGRV-LSMLPAMLLYLVFFLLQSSLRSNAGKGKLDPMVWMWLTNLVYLALAVIL 345
>gi|262370181|ref|ZP_06063508.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|262315220|gb|EEY96260.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 366
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/198 (14%), Positives = 63/198 (31%), Gaps = 6/198 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFG-VAAQGRLDAGILFSIIGYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL + +++ +++ +
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRNQLGRLLIPMTVVFLAVQAVLMLWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A G + L ++ I A + + +D
Sbjct: 121 APWGVRQFEQLTTSQAVRTGFDLVRPKEFI----SSGPYTIYAGDLSEDRKNLKDIFFYQ 176
Query: 184 I-DKKNKIIHRKDADLAI 200
+ + K A A
Sbjct: 177 RAEAEGKPDVMILAKEAT 194
>gi|126663512|ref|ZP_01734509.1| hypothetical protein FBBAL38_09189 [Flavobacteria bacterium BAL38]
gi|126624460|gb|EAZ95151.1| hypothetical protein FBBAL38_09189 [Flavobacteria bacterium BAL38]
Length = 156
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 1/144 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ +Y K YL T L+ + + ID++E N+M E ++ V
Sbjct: 2 KIIDKYILKRYLVTFSVMLIMFIPIGITIDVSEKVNKMIEK-KIPLTDILVYYGDFTVYF 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ P + I L +E++ + GIS + L PF+ G++++ IF +L+
Sbjct: 61 ANLLFPIFLFLSIIWFTSKLANNTEIIAILSSGISFARFLRPFIYGAVIVSIFALLMGFF 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQK 146
+ K D Q + +
Sbjct: 121 LIPQASKGFNDFRYQNLKGNSQTR 144
>gi|120436531|ref|YP_862217.1| permease [Gramella forsetii KT0803]
gi|117578681|emb|CAL67150.1| permease [Gramella forsetii KT0803]
Length = 459
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 5/158 (3%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
+ P ++ ++P L+ +I+ F + E ++ GIS+ + +
Sbjct: 20 DLDAEVILKFLLYFSPKLVPLVLPLTILLTSIMTFGSFAENYEFAAMKSSGISLGRAMRS 79
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
V + + N + + E I+L + I N I
Sbjct: 80 LTVFIVFISFVAFFFANNVIPAAEFKSINLRKNIAQLKPAMAISEG----IFNDIGTFNI 135
Query: 165 GAK-KILPENHIWEDFTSITIDKKNKIIHRKDADLAII 201
+ K + D + A +
Sbjct: 136 KVEDKTGENDQYLTDVIIHQKKQTGGNTTVIKAKEGEL 173
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 1/94 (1%)
Query: 261 KSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
K N+ + E + + + + + + A + R + + I +
Sbjct: 330 KRNVQQVNKFEIALHEKYALSIACIVLFFVGAPLGA-IIRKGGIGLPIVVAILLFLTYHF 388
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I K+ + G + A + + + L I +
Sbjct: 389 IGIFAKNSAEDGSVPAFVATWLSTFIMLPLGIYL 422
>gi|299771880|ref|YP_003733906.1| permease YjgP/YjgQ family protein [Acinetobacter sp. DR1]
gi|298701968|gb|ADI92533.1| permease YjgP/YjgQ family protein [Acinetobacter sp. DR1]
Length = 366
Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/198 (14%), Positives = 64/198 (32%), Gaps = 6/198 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + S + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVISLLTLIMMGGRLIKYFG-VAAQGRLDASILFSIIGYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL + +++ + +++ +
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + L + I A + + +D
Sbjct: 121 TPWGLREFEKLTTTQAVRTGFDLVR----PREFISSGPYTIYAGSLSEDRKNLKDIFFYQ 176
Query: 184 ID-KKNKIIHRKDADLAI 200
K++K A A
Sbjct: 177 RATKEDKPDVMILAKEAT 194
>gi|242310520|ref|ZP_04809675.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
gi|239522918|gb|EEQ62784.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
Length = 341
Score = 65.3 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/353 (13%), Positives = 120/353 (33%), Gaps = 41/353 (11%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + + L + V+ I + + S L +PL++ +I
Sbjct: 6 YLFHSFSQIFFPTFLVLFFIASVVIFIRIAG-VTFVVQISFLELLSLYFYTLPLMLFFVI 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P V + L+ EL + A+G+S +++ F ++L I ++ +
Sbjct: 65 PLSFFVACALSLSRLSFDYELPVLFALGMSPNKIIKIFFPIALLASISLFILSLILTPLS 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ +++ K++ + ++ N ++ K E+ ++D ++ K+
Sbjct: 125 DLAYRQFLEERKNSININLQAGEFGQKLGN-----WLVYVKENHEDMSYKDIVLLSFGKE 179
Query: 188 NKIIHRKDAD--------LAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQ 238
+I KDA AI+ N Y+ I+K TL + +
Sbjct: 180 GGLIFAKDAKIINKDGVMEAILDNG-------KIYRPDENAIEKIAFKTLILRNSITDI- 231
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI-PLMLV-AMTLIAASVSL 296
+ ++ + + + Y L+ + P + + L+
Sbjct: 232 -SGQNLGVFEYWNRAFYENDRQRKTLRD-----LSMYVLMSLFPFVSLYFFPLLGV---- 281
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+ R Q + + + Y + ++ + L + L+P++ ++
Sbjct: 282 KNPRY-QRNHTILQSMLIIGVFYALTYLV-----ANYLPLIGMVLLPIVWGLA 328
>gi|325282782|ref|YP_004255323.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
gi|324314591|gb|ADY25706.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
Length = 402
Score = 65.3 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/207 (14%), Positives = 68/207 (32%), Gaps = 8/207 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY + L G ++ ++ L + A +VP +
Sbjct: 4 INRYILSELIPPLLA---GVLLFTALLSFGYFFVSSQWLQGVAPGLVAQWIGYQVPDTLV 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+++P +++ IV F LN ELV ++ GI + Q P + +LL + ++ + +A
Sbjct: 61 KVLPMAAVLMTIVAFGRLNTERELVALQSGGIGLGQAGRPVALIGLLLALLSLWLSLWVA 120
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L + + + + P ++ +
Sbjct: 121 PKANVETRSLYWDVMTGSGLSSMAG----RTLDLGGGLNVYWAGYDPATRKLQNVRAERW 176
Query: 185 DKKN-KIIHRKDADLAIIYNDKVKLKK 210
K + K + A ++ ++L
Sbjct: 177 SKDDPKRVELVFAREGTFEDNLLRLTD 203
>gi|289612795|emb|CBI60020.1| unnamed protein product [Sordaria macrospora]
Length = 187
Score = 65.3 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/189 (13%), Positives = 66/189 (34%), Gaps = 5/189 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP I RY + LL + +L+ + + + + + +S + A +P
Sbjct: 1 MPSI-DRYMARLIAVPLFSTLLISAMLLVLDRMLRLFDFVAAEGG-PVSVVWRMLANLLP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ IP ++ ++ F L +SEL + +G+S W+LL + + +L + ++
Sbjct: 59 EYLGLGIPIGLMLGILLAFRKLATSSELDVMLGVGMSYWRLLRVPFIYATVLAAANLAIV 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
I L + + + + ++ + + + ++
Sbjct: 119 GYIQPLARYNYEALRFELRTGALGASIKVGEFTKLG---ERMTLRIEESRDSGADLRGIF 175
Query: 181 SITIDKKNK 189
+
Sbjct: 176 VQASRPDGQ 184
>gi|319788014|ref|YP_004147489.1| permease YjgP/YjgQ family protein [Pseudoxanthomonas suwonensis
11-1]
gi|317466526|gb|ADV28258.1| permease YjgP/YjgQ family protein [Pseudoxanthomonas suwonensis
11-1]
Length = 361
Score = 65.3 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/371 (11%), Positives = 131/371 (35%), Gaps = 37/371 (9%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + ++++ L L+ + + L ++ ++ + ++ + +
Sbjct: 4 LDRYLLRDFVQSFLATLIVLLTVSLGGVLVDVLGEIAD-GGLPARLLLSQLGLQLLVYLP 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P ++ ++ L R SE+ + A+G+ +LL P ++ + + + + +
Sbjct: 63 LVLPLALMLGLMLAVARLYRDSEMAVLNAVGVGPKRLLRPLLMAVVPVVVAVGMCSLWLG 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ ++I+Q + + + + N + + + + +
Sbjct: 123 PWAQRTAANMIEQANRSLIVAGLEPGRFTSLPNGGG--IVYIDGMSEDGRTLQGV-FLQR 179
Query: 185 DKKNKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
++ + + A + + ++L + G + + + +
Sbjct: 180 ERDGR-VDVVTARTGSLEFGGDRDRFLRLADGRRLE-GPLEQGLDFRLMRYAVNEVALPD 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYR--AETQFYFLIVIPLMLVAMTLIAASVSLE 297
+E+ A + + ++F++ R A + + + PLM +A L+ ++
Sbjct: 238 RAEERADDD-------PAIAPTLSLFNDGRPAAIAELHGRLTPPLMALAFALLTVPLARS 290
Query: 298 FSRSNQPRIIVAYGIFSGFMLYT----IITIMKSFGKSGILLPVAAAL---IPVILTISL 350
R + ++ GF+ Y ++ I G L +P +
Sbjct: 291 SPRQQRYGRLML-----GFLAYLVGLNLMFIGVRMLADGKLPAPVGLWWLTLP-----LM 340
Query: 351 SILILLQKEDG 361
++ I L DG
Sbjct: 341 ALAIWLYLRDG 351
>gi|311747143|ref|ZP_07720928.1| membrane protein [Algoriphagus sp. PR1]
gi|126578851|gb|EAZ83015.1| membrane protein [Algoriphagus sp. PR1]
Length = 604
Score = 65.3 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/269 (13%), Positives = 82/269 (30%), Gaps = 21/269 (7%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L + ++ L L ++ +++ + +++ +++ + I
Sbjct: 4 LDKLILGSFIGPFLLTFLVVDFILLTVNMLKYFDEIFGKGLDFWIYMELISYFVI-SISP 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P L+ +++ F NL EL ++ GIS+ + + V I+L L N +
Sbjct: 63 MALPLAVLLSSLMTFGNLGEHFELTAIKSSGISLIRAMRSIGVFVIVLSFAAYLSNNHLV 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
L+ + + + KK+ ++ +D
Sbjct: 123 PKVNLKTFSLLYDIRMKSPALDIKEGVFY--NGIPGYSIKVNKKL--DDVRLKDIIIYDH 178
Query: 185 DKKNKIIHRKDADLAI-------------IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
++ AD +YN ++ P++ +
Sbjct: 179 TGVQGNLNVTLADSGRMETFFNDSYMRLTLYNGINYSEERQSRGIAEKPVNFSRGEFETN 238
Query: 232 I---KMDGFQKFSEQFASRSFYEIIKKMS 257
+ +D FQ S IK +S
Sbjct: 239 VIVFSLDAFQMDRTPEDLWSTNRAIKNIS 267
Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 1/88 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R E +Y + M +I A + + + V I + Y + +
Sbjct: 484 RRYEISWYQKYTQAFACIVMFMIGAPLGA-IIKKGGLGMPVLISIIFFIVYYMLTMTGEK 542
Query: 328 FGKSGILLPVAAALIPVILTISLSILIL 355
+ K GI+ P+ + I + L
Sbjct: 543 WAKEGIIDPLIGTWFSNLCLIPFGLFFL 570
>gi|57167826|ref|ZP_00366966.1| conserved hypothetical integral membrane protein, putative
[Campylobacter coli RM2228]
gi|57020948|gb|EAL57612.1| conserved hypothetical integral membrane protein, putative
[Campylobacter coli RM2228]
Length = 341
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 54/361 (14%), Positives = 124/361 (34%), Gaps = 54/361 (14%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY +L T L +V ++ ++ ++ + + L +P I+
Sbjct: 6 RYVLNQFLSTNLSIFFVLFTIVSMVFFIQLA-KLTSSIEINFADLLKLYGFMLPRILIFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + + F L+R +E ++ +G S L F+ + L+ +++ +
Sbjct: 65 LPIAFFIALTLALFRLSRENESIVLFTLGFSPKILAKFFLKIAALVSALMLIIALVMIPI 124
Query: 127 GEKIGIDLIQQWKDNGDKQ------KSDIIPWM----QISNPQQDIFI--GAKKILPENH 174
++ + + K + WM + + + + I K+ + +
Sbjct: 125 VFELQDNFVNFKKTQVKFNYKTGEFGQRFLEWMIFIEKQESDRYENIIMYHPKRNIEDKE 184
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
I K+ +D+ + N K+ ++ G+ N L + +
Sbjct: 185 QLI------IAKEATAQRNEDSFAFKLSNG-----KMYNFENGQTLFIGNFDKLIVNTQF 233
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + ++ FYE ++ + K +F + I L +A TL A S
Sbjct: 234 ND-----QNLQTKKFYEYWNDLNTNPKRAK--------EFVIYVTIALFPLASTLFALSF 280
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ R + + +G+F +Y ++ SF + P+ A + I
Sbjct: 281 GIVTYRYEKGF--IYFGMFGVIAVYF--GLLSSFSQ----PPILA---------CIGIFA 323
Query: 355 L 355
L
Sbjct: 324 L 324
>gi|308189157|ref|YP_003933288.1| hypothetical protein Pvag_3723 [Pantoea vagans C9-1]
gi|308059667|gb|ADO11839.1| Uncharacterized protein [Pantoea vagans C9-1]
Length = 204
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 3/170 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ L L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVD-GEVPTNLVLTLLGLGVPQMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+S L+ +V + + + + +
Sbjct: 61 QLILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMVLMLFTSVVAAVNVIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN 173
+ ++ Q K N + ++ + + + N
Sbjct: 121 GPWSSRYQDEVTQNAKANPGAAAMAAGQF--QTSSDGSAVLFVEDVKGNN 168
>gi|261749398|ref|YP_003257083.1| hypothetical protein BPLAN_316 [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497490|gb|ACX83940.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 395
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 61/145 (42%), Gaps = 5/145 (3%)
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
II +IP L+ +I+ + ++ + EL+ ++ GIS+++++ P + + LL +
Sbjct: 24 SIIPLVIPISILLTSIITYGYISESQELIAIKSSGISLFRVMKPLLCITFLLSVGLYFFS 83
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ +L Q + ++ N D FI K +N +
Sbjct: 84 DFSIPEAKRKAQELGYQISITHPSLRLKEGVFV---NLFPDFFIKIGK--KKNSKLLENL 138
Query: 181 SITIDKKNKIIHRKDADLAIIYNDK 205
I KN I+ A+ I+ +K
Sbjct: 139 FIFFYGKNLAINTILAEKGILIPNK 163
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 1/106 (0%)
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+ ++ ++ H + + + P+ + M LI A + R
Sbjct: 279 LIDELQHQKKFLQNRKKHLAKYQFELQKKFTFPVTCIIMFLIGAPLGA-IIRKGGMGRPT 337
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I + +T++TI ++ G+ + P A IP + LSI I
Sbjct: 338 LIAIIIFIIYHTLLTITQNQGEKAEIWPWIGAWIPNFVFFPLSIWI 383
>gi|152993423|ref|YP_001359144.1| hypothetical protein SUN_1840 [Sulfurovum sp. NBC37-1]
gi|151425284|dbj|BAF72787.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 341
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 61/348 (17%), Positives = 131/348 (37%), Gaps = 32/348 (9%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + K L + +++ ++ L +I + ++ + +L + +P II I
Sbjct: 7 YISSNFTKAFLTIFIPFFLIISLVYLVKISSLTAQI-QINFLELLLLYSYSLPNIIFYTI 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L++ +EL+ A+G+ ++L ++ IL + ++ ++ G
Sbjct: 66 PLSFIAAVTNTLMKLSQDNELIALYALGLKAKKVLRSILLLGILFSVL----LSTLSFLG 121
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
I L +K+ + + I ++ D +I K+ ++ ++ D KK
Sbjct: 122 IPISKQLYNAFKEKKKTEATLNIIPGKLGQKFGDYYIYVKEKDEKSKLFHDMVIYNRTKK 181
Query: 188 NKIIHRKDADLAIIYNDKVK----LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + + DK+ LK+ Y Y + + + D QK+
Sbjct: 182 DA-EQFFSSKQGQLNRDKLVASLLLKEGYGYTYTKNKLQQAKY--KSLEVFDSKQKYRFH 238
Query: 244 F-ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
F S++ +IK +F+ F LI P++ V + A+ ++ R
Sbjct: 239 FQDIVSYWALIKTDKHRMGRALFYL------FVSLI--PILSVYLV---AAFAMINPRYQ 287
Query: 303 -QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
I+ + I LY I S K G + + L +++ I
Sbjct: 288 ANYSFIIIFSITL--SLYLI---ASSLEKWGDIPALI--LTAIVIFIF 328
>gi|52842836|ref|YP_096635.1| permease [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|52629947|gb|AAU28688.1| permease [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
Length = 333
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/340 (15%), Positives = 111/340 (32%), Gaps = 34/340 (10%)
Query: 32 DLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVIS 91
+ N+ + L +P ++ ++P V ++ + L SE+ +
Sbjct: 4 QFIQYLNRAAS-GSIPGFVIMKLLMLELPNLMGLLLPLGFYVALLLAYGRLYAESEMTVL 62
Query: 92 RAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQK-SDII 150
RA G QLL + ++ + +V+ + I ++ I+ + G K I+
Sbjct: 63 RACGYGPRQLLKHSFAMATVVLVVVAIVMIWASPV---IAVERIKLIRSTGIKTLIQTIM 119
Query: 151 PWMQISNPQQDIFIGAKKILPENHIWEDFTS--ITIDKKNKIIHRKDADLAIIY------ 202
P + + + ++ E ++ + AD A
Sbjct: 120 PGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHSVQDNRLLWDVLWADKAFAEVNPQTG 179
Query: 203 NDKVKLKKVVEYQ--YGRIP---IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMS 257
+ + L+ EYQ G + S +P + +R + +
Sbjct: 180 EEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPNPTVVMHDDARTAKTRDLWPLNN--- 236
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
H+ + + + I IPLM++ +TL+A +S RS + ++ I F
Sbjct: 237 --------HDLKKAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGKYSKLLPAIIIYIFY 288
Query: 318 --LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ + +G + + L IL +
Sbjct: 289 ANFMFVSRDAIA---TGKIPWWIGMWWVHVAVAILGILFI 325
>gi|157368808|ref|YP_001476797.1| permease YjgP/YjgQ family protein [Serratia proteamaculans 568]
gi|157320572|gb|ABV39669.1| permease YjgP/YjgQ family protein [Serratia proteamaculans 568]
Length = 364
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/319 (14%), Positives = 106/319 (33%), Gaps = 34/319 (10%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F +L + + + + L A VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFCQNLVRVLGDAVD-GDVPTNLVLSLLALGVPKMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ +V ++ + + +
Sbjct: 61 QLILPLSLFLGLLMTLGRLYTDSEITVMHACGLGKRTLIIAAMVLALFTSVIAAANVFWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGD---------KQKSDIIPWMQISNPQQDIF--IGAKKILPE 172
+ ++ + K N K D + I N + F + ++ P
Sbjct: 121 GPWASRYQDVVVSEAKANPSIAGLAEGQFKTSQDGNAVLFIGNVKGSTFNNVFLAQLRPN 180
Query: 173 NHIWEDFTSITIDKKNKII---HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
+ + N++ D + L+ + D + +
Sbjct: 181 GNQRPSVVVAEHGQINQMKDGSQVVTLDKGTRFEGTALLRDFRITDFN----DYKAVVGH 236
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ +DG Q + + A +F++ + + L +V M L
Sbjct: 237 RAVTVDGNQAEQMSMKTLLASDDPD---------------ARAEFHWRLTLVLSVVIMAL 281
Query: 290 IAASVSLEFSRSNQPRIIV 308
+ +S+ R + ++
Sbjct: 282 LVVPLSVVNPRQGRVLSML 300
>gi|93004884|ref|YP_579321.1| permease YjgP/YjgQ [Psychrobacter cryohalolentis K5]
gi|92392562|gb|ABE73837.1| permease YjgP/YjgQ [Psychrobacter cryohalolentis K5]
Length = 428
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/397 (11%), Positives = 135/397 (34%), Gaps = 64/397 (16%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
+ +T +LG ++++ + + N I + +P ++ I+P +
Sbjct: 5 VASTTALVLGFLVVMMLGGRLIRYFGIAAEGNLDIGLLFTIIGYNLPYFLELILPLAFFI 64
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQL--LNPFVVGSILLGIFTVLVINPIATSGEKIG 131
++VF L E+ + A G+S +L L ++ ++ +G + ++ G +
Sbjct: 65 ALMLVFGRLYVDQEMAVINASGVSRGRLGRLMTPLILALFVGEAALSIVGK--PWGVRSS 122
Query: 132 IDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK-- 189
++ W+ D+I + + + + +D I + + K
Sbjct: 123 ENV---WQQQALTSAFDLIR-PNQFISSGNYHLYVGSLSDDKKQLQDVILIQSEPEKKGS 178
Query: 190 -------------IIHRKD----------------------------ADLAIIYN----- 203
+ + D A A +
Sbjct: 179 GAKNNTAKNSAMDLENNIDVETTEQLNIPELPTALANNNISKDTITLAKRAEQVDTGNSG 238
Query: 204 -DKVKLKKVVEYQYGRIPIDKNST---TLNIPIKMDGFQKFSE-QFASRSFYEIIKKMSF 258
++ L + Y+ G + N I + + +E +++ + + +
Sbjct: 239 VTQLDLFQGRRYEVGAGSLKYNQVGFDRYRITLTESSKEVITEDNIETQAIGPLWQAATG 298
Query: 259 SNKSNIFHNYR-AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ + + R A+ + + + +P +++ ++A ++ R + + +
Sbjct: 299 NAQVGSNNAMRAAQGELGYRLSLPWLMIIAPMLAVPLAQVRPRQGRWLRLFPSILLFVSC 358
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
II++ + GK G + A A + ++ ++L++ +
Sbjct: 359 ALGIISLKNAVGK-GSVSVWAYAWL-ILGFMALALYM 393
>gi|307129163|ref|YP_003881179.1| hypothetical protein Dda3937_01299 [Dickeya dadantii 3937]
gi|306526692|gb|ADM96622.1| conserved inner membrane protein [Dickeya dadantii 3937]
Length = 372
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 54/365 (14%), Positives = 129/365 (35%), Gaps = 35/365 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ + L +++ F L I + + + L VP +
Sbjct: 2 IIIRYLVRETFKSQVAILFILLLIFFCQKLVRILGAAVD-GDIPTNLVLSLLGLGVPAMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ F L SE+ + A G+S LL ++ S+L F + +
Sbjct: 61 QLILPLSLFLGLLMTFGRLYAESEITVMHACGLSKGVLLKAALLLSLLTASFAAANVLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG-AKKILPENHIWEDFT-- 180
+ + +++ + + N + Q + +F+G A E
Sbjct: 121 SPWSSRHQDEVLAEARANPGMASLAEGQFQQTQDGNSVLFVGKANGSDFERVFLAQLHPR 180
Query: 181 -----SITIDKKNKIIHRKDA------DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
S+ + + + R D Y L+ + ID +
Sbjct: 181 ENTRPSVVVADRGTVTARGDGSQVVTLSKGTRYEGTAMLRDFRITDF----IDYQAIIGY 236
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
P+ +D +Q ++ + + A +F++ + + L ++ M +
Sbjct: 237 QPVALDPNNV--DQMDMQTLWR-------------SSDIAARAEFHWRLTLILSVLVMAI 281
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+ +S+ R + + + + + + + + ++S G L P+ + + +
Sbjct: 282 MVVPLSVVNPRQGRV-LSMLPAMLLYLVFFLLQSSLRSNAGKGKLDPLVWMWLTNLGYFA 340
Query: 350 LSILI 354
L+I +
Sbjct: 341 LAIAL 345
>gi|239809484|gb|ACS26210.1| unknown [uncultured bacterium]
Length = 359
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/317 (11%), Positives = 103/317 (32%), Gaps = 20/317 (6%)
Query: 49 SRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVG 108
++ R+P +Q I+P + ++ + L SE+ + A G+S +LL +
Sbjct: 32 GVLLLIMGFRLPGFLQLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQRRLLVYSLAP 91
Query: 109 SILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK 168
+ L+ + + +A G ++ Q + ++P + ++
Sbjct: 92 AALVAVVVGWLSLGLAPQGIAEVDRILNQQDSLTEFDT--LVPGRFQTLRGGSRVTYTRE 149
Query: 169 ILPENHIWEDF-----TSITIDKKNKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGR 218
+ + K + A+ + + L+ Y
Sbjct: 150 LSADRSELGGVFISETNVSRQTGKESGLSVLVAESGRQEVQPDGSRYLILENGYRYDGNP 209
Query: 219 IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
D + + + + S + + R + + N R T+ +
Sbjct: 210 GQADYRAIQYDTYGVLLPKPEVSMELSEREALPTRELL-------GSDNIRHRTELQWRF 262
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+PL++ +T++A ++ R + + + I ++ ++ G +
Sbjct: 263 SLPLLVFVVTVLAVPLAKVNPRQGR-FLKLLPAILLYMTYLALLIAVRGALDKGRIPMAL 321
Query: 339 AALIPVILTISLSILIL 355
L +++ +L+L
Sbjct: 322 GLWWVHGLFLAIGLLML 338
>gi|262280663|ref|ZP_06058446.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262257563|gb|EEY76298.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 366
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/198 (14%), Positives = 62/198 (31%), Gaps = 6/198 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVISLLTLIMMGGRLIKYFG-VAAQGRLDAGILFSIIGYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL + +++ + +++ +
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPITLVYMVCQSVLMLWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + L + I A + + +D
Sbjct: 121 TPWGLREFEKLTTTQAVRTGFDLVR----PREFISSGPYTIYAGSLSEDRKNLKDIFFYQ 176
Query: 184 I-DKKNKIIHRKDADLAI 200
K +K A A
Sbjct: 177 RAAKADKPDVMILAKEAT 194
>gi|255020899|ref|ZP_05292955.1| Predicted permease [Acidithiobacillus caldus ATCC 51756]
gi|254969690|gb|EET27196.1| Predicted permease [Acidithiobacillus caldus ATCC 51756]
Length = 372
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/317 (12%), Positives = 115/317 (36%), Gaps = 19/317 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ + L+ ++ L + ++ + L+++ +Q+ + L P ++
Sbjct: 4 IHARILRDLLRVFVFGCLLVLGILAIGQLSQLLSQVAS-GQLPLGVTLQLLGLATPTLLV 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P +VF NL R++E++ R+ G+S+ LL + +++ + L+ +
Sbjct: 63 TVLPLAFFFALYLVFSNLYRSNEMMAIRSAGLSLLDLLRALALPILVIALLEALLSLSWS 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ ++ + + + + +I+ + + P + + +
Sbjct: 123 PAAQRQLQAESLRLANAAAEALIQPGSFARIAGGH---ILYVGQSAPGSEHRYREIFVDL 179
Query: 185 DKKNKIIHRKDADLAIIY------NDKVKLKKVVEYQYGRIPIDKNSTTLNI---PIKMD 235
K + D A + + L + ++Y P L+ I +
Sbjct: 180 GGKGEP----DIATAAFGEIRKDQDGGIALVLIQGHRYLGQPGTAGFKILSFVHYRIALA 235
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q S+Q + ++ + + + + AE ++ ++ PL++ + L+A ++
Sbjct: 236 APQGSSDQGIHWAALDLPQVLQALREPRYARHALAELEW--RLIWPLLIPVLALLAIPLA 293
Query: 296 LEFSRSNQPRIIVAYGI 312
R GI
Sbjct: 294 FGGPRGAGRASGALLGI 310
>gi|270265132|ref|ZP_06193395.1| permease YjgP/YjgQ family protein [Serratia odorifera 4Rx13]
gi|270041066|gb|EFA14167.1| permease YjgP/YjgQ family protein [Serratia odorifera 4Rx13]
Length = 364
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/319 (15%), Positives = 108/319 (33%), Gaps = 34/319 (10%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F +L ++ + N + L A VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFCQNLVKVLGDAVD-GNVPTNLVLSLLALGVPKMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSIL---LGIFTVLVI 120
Q I+P + ++ L SE+ + A G+ L+ +V +++ + V
Sbjct: 61 QLILPLSLFLGLLMTLGRLYTDSEITVMHACGLGKRTLIIAAMVLALITSAVAAVNVFWA 120
Query: 121 NPIATS------GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF--IGAKKILPE 172
P+A+ E I + K D + I N + F + ++ P
Sbjct: 121 GPVASRYQDVVISEAKANPSIAGLAEGQFKPSQDGNAVLFIGNVKGSTFNDVFLAQLRPN 180
Query: 173 NHIWEDFTSITIDKKNKII---HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
+ K N++ D + L+ + +
Sbjct: 181 GNQRPSVVVAERGKINQLKDGSQVVTLDKGTRFEGTALLRDFRITDFNDYKAVVGHRAVA 240
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
I +EQ + ++ ++ + A +F++ + + L + M L
Sbjct: 241 IDGNQ------AEQMSMQALWQ-------------SDDPDARAEFHWRLTLVLSVAIMAL 281
Query: 290 IAASVSLEFSRSNQPRIIV 308
+ +S+ R + ++
Sbjct: 282 LVVPLSVVNPRQGRVLSML 300
>gi|306842048|ref|ZP_07474721.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
gi|306287889|gb|EFM59309.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
Length = 371
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/325 (15%), Positives = 109/325 (33%), Gaps = 22/325 (6%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ ++ +P I ++PF ++ +N+ SELV+ A G ++
Sbjct: 11 SGQTFQTIVQFSSLLIPSAIPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMR 70
Query: 104 PFVVGSILLGIFTVLVINPIATSG--------EKIGIDLIQQWKDNGDKQKSDIIPWMQI 155
P ++ + + + + L+ N + DL+ G +K ++Q+
Sbjct: 71 PILILAATVSVTSFLIANYVEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQV 130
Query: 156 SNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ 215
+ + D IG I D I I D+ ++ N +V+ + V +
Sbjct: 131 AERRADGSIGGLFIADSRDPTLD--LIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGT 188
Query: 216 YGRIPIDKNSTTLNIPIKM--DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN---YRA 270
I D + LN D ++ + + + R
Sbjct: 189 VSIIKFDSYAFDLNQFASAGDDFVIFAKDRPLTYLLNPDPNDPMLQTRPLTYRAELHRRF 248
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
Y LI ++A+ + S S +R + ++ + + Y
Sbjct: 249 TQWIYPLI---FAMIALAIAGDSRSHREARVSASFSAISTALLVYWAGYFASDRADK--D 303
Query: 331 SGILLPVAAALIPVILTISLSILIL 355
S +L + L+P+++ + ++L
Sbjct: 304 SSYILVMY--LVPLVVFLVTGFILL 326
>gi|238023199|ref|ZP_04603625.1| hypothetical protein GCWU000324_03126 [Kingella oralis ATCC 51147]
gi|237865582|gb|EEP66722.1| hypothetical protein GCWU000324_03126 [Kingella oralis ATCC 51147]
Length = 368
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/320 (11%), Positives = 102/320 (31%), Gaps = 18/320 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R F K T + + ++ + + + ++ L +
Sbjct: 2 IYHRQFIKETTLTAIAIFFVVLAILVFTQGINMLGRAAD-GRVAVDAVTTLIGFWTLGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ I + G+ + + + P + ++ L + + +
Sbjct: 61 PLLLVLTAYISTLTVLTRYWRDSEMAIWLSSGLGLKKWIRPVLTFALPLAVLVATMQISV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + ++ ++ + +N I ++
Sbjct: 121 LPWAEYRSREYAEILKQKQNLSLVQAGTFSELGKKDGRVY-FVETFDTDNGIMKNLFIRD 179
Query: 184 IDKKNKIIHRKDADLAIIY----NDKVKLKKVVEYQYGRIPIDKNSTTLN-IPIKMDGFQ 238
ID+ + A + L Y D + + + + ++
Sbjct: 180 IDETGR-DSVVFAKEGRFDLSNNKRTLVLTNGYRYSGIAGRGDFDQVSFQELNLIINTTP 238
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
K + R + + N + + + + + +P+ ++ ++L+A +S
Sbjct: 239 KVVDPIDHRRTIPTAQLI-------GSSNPQYQAELMWRVSLPITVLLLSLLAIPLSYFN 291
Query: 299 SRSNQPRIIVAYGIFSGFML 318
+RS ++ GF L
Sbjct: 292 TRSGNSYHVLL---AVGFFL 308
>gi|32491207|ref|NP_871461.1| hypothetical protein WGLp458 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166414|dbj|BAC24604.1| yjgP [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 357
Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 64/328 (19%), Positives = 125/328 (38%), Gaps = 15/328 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ +Y K LK+ + L ++ F L I + M E L +P II
Sbjct: 2 IILKYLIKKILKSQFHILCILFLIFFCQKLVRILSSMSEEL-IPKKIIFFLLILYIPEII 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + +V L+ ++E++ + GI + + ++L+ F+ + + I
Sbjct: 61 KLILPLSLFISIALVMQKLHNSNEIISIKTCGIGNECFIKVILFLNLLVMSFSFVNVMWI 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ +I N DK K + + I + +I + I +N
Sbjct: 121 SPLALNYKHKIISYNLSNIDKLKLNEKQFKFIKDK--NIILFVDNIKDKNLKNIFIVKFI 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-IPIDKNSTTLNIPIKMDGFQKFSE 242
+ K I + +Y D +K K V+ YG ID S I + E
Sbjct: 179 LKNKEYIPVVFVSKHGSLYKDLLKNKNVINLNYGEYYEIDFKSNYFFIAS---FERYQIE 235
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHN--YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
F + S + + N+F++ + ++ + I I ++ M++I S +L +
Sbjct: 236 LFNTFSRLKEPSS-EYVYFKNLFNSCIEEYKLEYNWRITIVFSVLIMSII--SFALNIKK 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSF 328
+ + +F G Y I I ++F
Sbjct: 293 LGSGQ---FFNLFLGIFFYLIFFISQTF 317
>gi|224373192|ref|YP_002607564.1| putative permease YjgP/YjgQ [Nautilia profundicola AmH]
gi|223589644|gb|ACM93380.1| putative permease YjgP/YjgQ [Nautilia profundicola AmH]
Length = 323
Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 55/334 (16%), Positives = 111/334 (33%), Gaps = 36/334 (10%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y + + L ++ +I + I N + + + + +P ++
Sbjct: 4 LSKYLISGFWPIFIMIFLILFLVTSIIIIISIANITANI-HITFGELFKMYMLSLPKVLF 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+ + + +F + T EL+ + G+ + LL PF+ S+LL I +L++
Sbjct: 63 ITLSISFFISAVSLFAKHSETQELIALFSSGVKPYTLLKPFLFLSLLLTIVNLLILFISI 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + Q + + N + +E+
Sbjct: 123 PYAKVAFKNFKNQKQQAAKFNFQTSQISQRFGNW------NIFTSSKKGKTYENIILY-- 174
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
NK A A + N L E + G + ST +N F
Sbjct: 175 --NNKENQLILAKYAELKNKNGYLN--FELKKGNVYAFDKSTIIN--------------F 216
Query: 245 ASRSFYEIIKKMSFS--NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA--SVSLEFSR 300
+ I K S+S S F ++ FY +P L+ ++LI +S R
Sbjct: 217 GKMQINQKIPKSSYSIFRFSEYFKKFKELFAFY----LPFALLPLSLIFFIPPISFFHPR 272
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
+ R ++ Y I + + I S + ++
Sbjct: 273 IYKNRSLI-YAIALIVIYLVLTKITSSLAVNSLI 305
>gi|160898977|ref|YP_001564559.1| permease YjgP/YjgQ family protein [Delftia acidovorans SPH-1]
gi|160364561|gb|ABX36174.1| permease YjgP/YjgQ family protein [Delftia acidovorans SPH-1]
Length = 375
Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/324 (15%), Positives = 114/324 (35%), Gaps = 20/324 (6%)
Query: 20 FLLGAMILVFVIDLNEIQNQMGE--LPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIV 77
F ++L+ V+ + +G+ N S S ++ V + I+ V +
Sbjct: 15 FGATVVVLITVVMTMMLIRTLGQAYKGNVSPSDVLLVMGYTVLGQLPTILGLGLFVAVVG 74
Query: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ 137
+ R SE+VI A G + LL P + + + ++ I + + Q
Sbjct: 75 SLSRMYRDSEMVIWFAAGQGLASLLRPLLRFAWPVLAVIAVLGLGILPWANQQIEQIKTQ 134
Query: 138 WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDAD 197
++ D + I P + K +P + I +++ + A
Sbjct: 135 FEQRSDIDR--IAPGEFQESAGGSRVFFIDKDVPSATAANNV-FIVANERGR-ESVTSAR 190
Query: 198 LAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMS 257
A + + K + T + +K+ F+++ Q S S +
Sbjct: 191 GARLE-----VIKGERMAVLTDGQRMETQTSDGSVKISEFKEYGTQLGSGS--NLAAAEE 243
Query: 258 FSNKSNIFHNYR------AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYG 311
+ +S H + + I +PL + ++ +V+ R+ ++
Sbjct: 244 MAARSTYTHELLPRTEPIYRAELGWRIGLPLAALNFVILGLAVASVNPRAGGSGSLML-A 302
Query: 312 IFSGFMLYTIITIMKSFGKSGILL 335
+F+ + Y ++T+ +++ SG L
Sbjct: 303 LFAFIVYYNLMTLGENWVASGKLS 326
>gi|15618903|ref|NP_225189.1| hypothetical protein CPn0995 [Chlamydophila pneumoniae CWL029]
gi|15836526|ref|NP_301050.1| hypothetical protein CPj0995 [Chlamydophila pneumoniae J138]
gi|16752032|ref|NP_445398.1| hypothetical protein CP0860 [Chlamydophila pneumoniae AR39]
gi|33242364|ref|NP_877305.1| hypothetical protein CpB1032 [Chlamydophila pneumoniae TW-183]
gi|4377324|gb|AAD19132.1| CT838 hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|7189772|gb|AAF38649.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
gi|8979368|dbj|BAA99202.1| CT838 hypothetical protein [Chlamydophila pneumoniae J138]
gi|33236875|gb|AAP98962.1| hypothetical protein CpB1032 [Chlamydophila pneumoniae TW-183]
gi|269302795|gb|ACZ32895.1| putative permease, YjgP/YjgQ family [Chlamydophila pneumoniae
LPCoLN]
Length = 366
Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 54/365 (14%), Positives = 123/365 (33%), Gaps = 23/365 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVI--DLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I R+ + L+ A+I I L+ ++ S+ + ++ L
Sbjct: 3 IWKRHLLTRFWFALTSLLVLALIFYASIHHSLHTLKGASTAASGASVKLSILYYLAQISL 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++P + V F + E+++ +A G+S+ L++P ++ ++ +
Sbjct: 63 KAEFLMPQLVAVATTSTLFAMQNKREIILLQASGLSLKSLMHPLLLSGAVIMMVLYANFQ 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ EKI I + DK + IP + + + + I P+ +
Sbjct: 123 WLHPICEKISITKENMDRGTTDK-EQGKIPALYLKD---QTVLLYSSIEPKTLTLNNVFW 178
Query: 182 ITIDKKNKIIHRKDADLAI-----IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDG 236
I D K K A + + + + K + +
Sbjct: 179 IK-DPKTIYTMEKLAFTTLSLPIGLNVTQFFANDSENLELKEFFDMKEFPEIEFNFYENP 237
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHN------YRAETQFYFLIVIPLMLVAMTLI 290
F K E K + ++ QFY++++ PL +A ++
Sbjct: 238 FSKLFSAGNKNRLSEFFKAIPWNATGLGLSTQVPQRILSLLAQFYYVLISPLACMAAIIL 297
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
+A + L FSR+ + + + + + + S +L +PV+ +
Sbjct: 298 SAYLCLRFSRTPTVTLAYLIPLGTVNIFFVFLKAGIVLASSSVLPT-----LPVMAFPLI 352
Query: 351 SILIL 355
+ +L
Sbjct: 353 VLFLL 357
>gi|305432149|ref|ZP_07401315.1| conserved hypothetical integral membrane protein [Campylobacter
coli JV20]
gi|304444814|gb|EFM37461.1| conserved hypothetical integral membrane protein [Campylobacter
coli JV20]
Length = 341
Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 54/361 (14%), Positives = 123/361 (34%), Gaps = 54/361 (14%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY +L T L +V ++ ++ ++ + L +P I+
Sbjct: 6 RYVLNQFLSTNLSIFFVLFTIVSMVFFIQLA-KLTSSIEINFVDLLKLYGFMLPRILIFT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + + F L+R +E ++ +G S L F+ + L+ +++ +
Sbjct: 65 LPIAFFIALTLALFRLSRENESIVLFTLGFSPKILAKFFLKIAALVSALMLIIALVMIPI 124
Query: 127 GEKIGIDLIQQWKDNGDKQ------KSDIIPWM----QISNPQQDIFI--GAKKILPENH 174
++ + + K + WM + + + + I K+ + +
Sbjct: 125 VFELQDNFVNFKKTQVKFNYKTGEFGQRFLEWMIFIEKQESDRYENIIMYHPKRNIEDKE 184
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
I K+ +D+ + N K+ ++ G+ N L + +
Sbjct: 185 QLI------IAKEATAQRNEDSFAFKLSNG-----KMYNFENGQTLFIGNFDKLIVNTQF 233
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + ++ FYE ++ + K +F + I L +A TL A S
Sbjct: 234 ND-----QNLQTKKFYEYWNDLNTNPKRAK--------EFVIYVTIALFPLASTLFALSF 280
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ R + + +G+F +Y ++ SF + P+ A + I
Sbjct: 281 GIVTYRYEKGF--IYFGMFGVIAVYF--GLLSSFSQ----PPILA---------CIGIFA 323
Query: 355 L 355
L
Sbjct: 324 L 324
>gi|54113843|gb|AAV29555.1| NT02FT0414 [synthetic construct]
Length = 360
Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 53/365 (14%), Positives = 115/365 (31%), Gaps = 36/365 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ + T L + +V L + + I +P +
Sbjct: 2 ILEKYYNIDIVNTFTSITLFIISIVSANLLIRLFQEAYS-QGLGIDSIVKFVILTIPENV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL----LNPFVVGSILLGIFTVLV 119
+ P + ++ F +E+ ++ A GI+ Q+ L P V +I + + TV+
Sbjct: 61 SLVAPIAIFLAIVICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTI-ITLITVMY 119
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF-IGAKKILPENHIWED 178
+NP++ I + II P I IG K + D
Sbjct: 120 LNPLSKQTLDIYRASLSAKALLSSITDQKII-----KAPDGKIIYIGNKS----GNTLSD 170
Query: 179 FTSITIDKKNKIIHRKDADLAIIYND----KVKLKKVVEYQYGRIPIDKNS-------TT 227
++ A A I +D + V Y + + T
Sbjct: 171 VFLYQNTPQDGEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYT 230
Query: 228 LNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
+ D ++ + E +F++K+N + +F I + ++
Sbjct: 231 IFDNSDRDYNHDRVDRLYMHTLIE-----NFNDKNNG---TAYKAEFLGRINNAISVIVS 282
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
+L+A ++ R N+ + + + + + + + +P I
Sbjct: 283 SLLALALCRLRPRQNKYAK-LLPSVVVLAIYLCTNMFINTLMANSSVPVWIGFWLPHIFF 341
Query: 348 ISLSI 352
++
Sbjct: 342 TIFAV 346
>gi|254481219|ref|ZP_05094464.1| putative permease, YjgP/YjgQ family [marine gamma proteobacterium
HTCC2148]
gi|214038382|gb|EEB79044.1| putative permease, YjgP/YjgQ family [marine gamma proteobacterium
HTCC2148]
Length = 369
Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/371 (12%), Positives = 124/371 (33%), Gaps = 47/371 (12%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY L + ++++ + + + + + + R+P ++ I
Sbjct: 5 RYLALDVLVHMVAVSFVLLVIIISGRFVKYLAEAA-VGDLAAGILVPVLLYRLPGFMELI 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
IP + ++ + L SE+VI A GIS +L +V ++L+ + + I+
Sbjct: 64 IPLGLFIGILMSYGRLYVESEMVIFTATGISPQRLAGYTLVPALLVMVIVGGLSLFISPL 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN------------- 173
G L+ + + + + D+ A+ +
Sbjct: 124 GAARSEALLHAPESSQGINALAAGRF--QTRRSNDMVSYAQAVDANGVMHSVFLSQAERE 181
Query: 174 --HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIP 231
+I + + K A + N + + Y + ++ + P
Sbjct: 182 DDGELTMLLTIASEGEVKFDSATGARYLELRNGVRYVGYPGDLDYQVVSFEQFGELIPEP 241
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+G + ++ R+ ++ +K+ ++ + IP+M+ + +IA
Sbjct: 242 ---EGGVRTADPVDGRTTAHLLSSELLEDKAA----------LHWRLSIPVMVPIVAIIA 288
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLY--TIITIM-----KSFGKSGILLPVAAALIPV 344
+S R + + F+LY + + + G+ G +
Sbjct: 289 MCMSHTNHRRGRYIKMAPA-----FILYLGYLTLLANARSGIASGEGGTVNI----WAVH 339
Query: 345 ILTISLSILIL 355
L +++++ +L
Sbjct: 340 ALFLAVALAML 350
>gi|73542369|ref|YP_296889.1| permease YjgP/YjgQ [Ralstonia eutropha JMP134]
gi|72119782|gb|AAZ62045.1| permease YjgP/YjgQ [Ralstonia eutropha JMP134]
Length = 373
Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/354 (12%), Positives = 114/354 (32%), Gaps = 17/354 (4%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
+ L T + M+ + L + S + +L + ++
Sbjct: 7 LRRELAYTAGAVFLVMLTFMLTSLVIRILGLAANGKASPNDVLILIGLATIGYLSILLSA 66
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
+ ++V + SE+V+ + GIS+ L+ P + + + ++L+ +
Sbjct: 67 TLFISTLIVLTRWYKDSEMVVWFSAGISLRDLVKPVLQFAAPFILLSLLLGLFAWPWANQ 126
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
+++ G +++ SN +FI + ++ + +
Sbjct: 127 QSTLFRDRFEQRGVLSMIAAGRFIEPSNGNYVLFI----EGIDGNMKYARNVFVANAEAN 182
Query: 190 IIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
I A + + V ++ Y ID ++ + + +
Sbjct: 183 KIGVALAHQSTFETMPNGDRMVVMENGRRYAGTPGQIDYRI------VEFERYAVKVDNK 236
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
S E K + + + I +P++ +IA ++ R +
Sbjct: 237 PPESANEQPPKSRDTFDLLRKPTLENLGELLWRISLPILAFNFVMIAIPLAYVNPRLGRY 296
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+V + +I + +S+ +SG + A P+ L+ L++ +
Sbjct: 297 TPLVF-AVLIYLTYSNLINLAQSWVRSGSIPFWLA-WWPIHAVAFLAALLMFRY 348
>gi|301346207|ref|ZP_07226948.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB056]
Length = 201
Score = 64.1 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/198 (14%), Positives = 63/198 (31%), Gaps = 6/198 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY K + T+L + +++ L + + S + R+P +
Sbjct: 2 IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFG-VAAQGRLDASILFSIIGYRLPEFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++VF L E+ + G+S QL + +++ + +++ +
Sbjct: 61 TLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWM 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + L + I A + + +D
Sbjct: 121 TPWGLREFEKLTTTQAVRTGFDLVR----PREFISSGPYTIYAGSLSEDRKNLKDIFFYQ 176
Query: 184 I-DKKNKIIHRKDADLAI 200
K+ K A A
Sbjct: 177 RAAKEGKPDVMILAKEAT 194
>gi|150025640|ref|YP_001296466.1| hypothetical protein FP1590 [Flavobacterium psychrophilum JIP02/86]
gi|149772181|emb|CAL43657.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 484
Score = 64.1 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 61/446 (13%), Positives = 131/446 (29%), Gaps = 96/446 (21%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL +Y K YL + + + + + + +++ + + ++P +
Sbjct: 2 KILDKYLLKTYLTSFFGVFIILIFIFILQTVWLFISELAGK-DLDLILILKFLLFKMPGL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSIL--LGIF----- 115
I ++P L+ I+ F ++ E ++ GIS + + L +G F
Sbjct: 61 IPLVLPLSVLLSAIMTFGDMAENYEFAAMKSAGISFQRTMKGLTFFIFLLSIGAFFFANN 120
Query: 116 --------------TVLVINPIATSGE-------KIGIDLIQQWKDNGDKQKSDIIPWMQ 154
+ + P E I I + ++ NG+ + I
Sbjct: 121 VIPYAEFKFNNFRKNIAQVKPAMAIAEGQFSTIGNINIKVNKKSGTNGEFLEGVTIHKKS 180
Query: 155 ISNPQQDIFIGAKK--------------ILPENHIWEDFTSITIDKKNKI---------- 190
I +K +L + + +ED T + + + K+
Sbjct: 181 DLGEGAKTVIKSKSGQLISSEESSLLQLVLIDGYYYEDITPKSYEDRQKMPFAKVNFKRY 240
Query: 191 --------IHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+++ D I N L V ++Y + N +++ + F+
Sbjct: 241 TINIDLSKLNKVDGAEENITNACYMLNLVELKYTVDSLSTSYNKELVSVADNVYQRIGFN 300
Query: 242 EQFASRSFY----EIIKKMSFSNKSNIF-----------------------------HNY 268
S + I +SF ++S
Sbjct: 301 SNLQPDSLRPKKPKTIGLLSFLSRSEKVKILEIASSDAMSAKQNFDINNFSLDYKKKDIN 360
Query: 269 RAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
Y VI + M I A + R + + + + + + T K
Sbjct: 361 SFWISIYEKFVIAFACILMFFIGAPLGA-IIRKGGLGLPIVFAMLIFITFHFLNTFGKKV 419
Query: 329 GKSGILLPVAAALIPVILTISLSILI 354
+ + P A I L + L+I +
Sbjct: 420 AQESGMAPFLGAWISFFLLVPLAIFL 445
>gi|325300373|ref|YP_004260290.1| permease YjgP/YjgQ family protein [Bacteroides salanitronis DSM
18170]
gi|324319926|gb|ADY37817.1| permease YjgP/YjgQ family protein [Bacteroides salanitronis DSM
18170]
Length = 636
Score = 64.1 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/195 (15%), Positives = 63/195 (32%), Gaps = 10/195 (5%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSISRGAVLAATRVPLIIQQIIPFI- 70
LK+ L G + I + + + EL + + +IP
Sbjct: 11 ILKSFLLLFAGTFFICLFIFMMQFLWRYVDELVGKGLEINILAQFFF--YSGLTLIPISL 68
Query: 71 ---TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
L+ ++ F N EL+ +A GI + +++ P ++ LG+ + + N I
Sbjct: 69 PLAILLAALMTFGNFGERYELLSMKAAGIPLLRIMCPVILFCAFLGLMSFIFQNEIGPRA 128
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+K L+ K + + + I K E + +D
Sbjct: 129 QKKLWTLLVSMKQKSPEVDIPEGVFYSEIDGYN---IYVKHKDRETGMLKDVLIYNFSDG 185
Query: 188 NKIIHRKDADLAIIY 202
+ H A+ +
Sbjct: 186 FENAHIIWAEEGKLE 200
Score = 42.9 bits (100), Expect = 0.067, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 1/107 (0%)
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
S + SF K + + ++ I + L + I A + R +
Sbjct: 346 SLLSECEMKSFLTKDTDRNILSHRSDWHKKITLSLACLIFFFIGAPLGA-IIRKGGLGMP 404
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
V + + Y I + GKSG + + ++ L
Sbjct: 405 VVISVVIFVIYYIIDSGATRVGKSGEMNVALGTWMSTLVLAPLGAFF 451
>gi|187918661|ref|YP_001884227.1| hypothetical membrane spanning protein [Borrelia hermsii DAH]
gi|119861509|gb|AAX17304.1| hypothetical membrane spanning protein [Borrelia hermsii DAH]
Length = 429
Score = 64.1 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 51/382 (13%), Positives = 122/382 (31%), Gaps = 72/382 (18%)
Query: 46 YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF 105
+ + +P++I PF L+ I+ + +E++ R+IGISI+ LL PF
Sbjct: 48 VPFFKAFIFVIYSLPMVIALSPPFAALLSVILTIYRFKLNNEILAFRSIGISIFDLLVPF 107
Query: 106 VVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN---------GDKQKSDIIPWMQIS 156
+++ + ++ + + G + + + K+ KQ D+I
Sbjct: 108 FKLGVVIALIAFILNDFLLPLGSIGRLKIFNEIKEEIPHLILKPYSSKQYGDLIFVSGEK 167
Query: 157 NPQQ---------------DIFIGAKKILPEN------HIWEDFTSITIDKK-------- 187
+ D A+++ + I D SI + +
Sbjct: 168 SDTGYRNVTFFDNTRLKGYDRIFMARELNIQKENYQVYFILNDVLSIALTEDESGFYDYF 227
Query: 188 --NKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN-STTLNIPIKMDGFQKFSEQF 244
+++ + D + ++D L V Q + K + ++D E
Sbjct: 228 YADRMKYSID---QVTFSDSWLLSNVTPSQMSMRDVIKLIVKQDKLVKELDMRNDLEEDL 284
Query: 245 ASRSF-------------------------YEIIKKMSFSNKSNIFHNYRAETQF---YF 276
+F Y +++S ++ + Y
Sbjct: 285 LHLNFSNTYLNYLYATNSIVDENYFLENLNYMYNLSLNYSPYEDLLAKRSYALFYLEFYQ 344
Query: 277 LIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLP 336
I +PL ++ +A + + ++ + + I + + K + P
Sbjct: 345 KISLPLSVLFFIFLAFGMGMYSNKKYSIILELVISILICVFYWVMFIGGKVYTVQYAPNP 404
Query: 337 VAAALIPVILTISLSILILLQK 358
++P + I +++ L+
Sbjct: 405 FLVTVLPNVALIFAGLILFLRL 426
>gi|167626384|ref|YP_001676884.1| hypothetical protein Fphi_0162 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596385|gb|ABZ86383.1| conserved membrane protein of unknown function [Francisella
philomiragia subsp. philomiragia ATCC 25017]
Length = 360
Score = 64.1 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 49/363 (13%), Positives = 110/363 (30%), Gaps = 32/363 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + Q I +P +
Sbjct: 2 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQQAYS-QGLGIDSIIKFVILTIPGNV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLL---NPFVVGSILLGIFTVLVI 120
+ P + ++ F +E+ ++ A G++ Q++ V ++ TV+ I
Sbjct: 61 SLVAPIAIFLAIVICFGKYFANNEMFVTLAGGVTWMQIVKNTMKPVYALTIITFLTVMYI 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
NP++ + I + II I K + +D
Sbjct: 121 NPLSKQTQDIYQASLTAKALLSSITDDKII-----KTTDGK-VIYIKS--KSGNTLKDVF 172
Query: 181 SITIDKKNKIIHRKDADLAI-----------IYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
+ A +A ++ + K+ Y++ T+
Sbjct: 173 LYMATDNSDEYKVVTAPVAEVIIDKGAAYVDFHDAHIYTKEPKTYEHTYDTAKNAIYTIF 232
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
D ++ + E N ++ + +F+ I + ++ +L
Sbjct: 233 DTSDRDYNHDKVDRLYMHTLIE--------NFTDKDDGTVSRGEFFGRINNSISVIVASL 284
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+A ++ R N+ + + + + + G L +P I I
Sbjct: 285 LALALCRLRPRQNKYAK-LLPSVVVLAVYLCSNMFVNTLMTGGKLPVWIGLWLPHIFFII 343
Query: 350 LSI 352
+I
Sbjct: 344 YAI 346
>gi|323344722|ref|ZP_08084946.1| hypothetical protein HMPREF0663_11482 [Prevotella oralis ATCC
33269]
gi|323093992|gb|EFZ36569.1| hypothetical protein HMPREF0663_11482 [Prevotella oralis ATCC
33269]
Length = 633
Score = 64.1 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 65/193 (33%), Gaps = 8/193 (4%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
F ++ T M+ ++E+ + S+ A +++ Q +P
Sbjct: 15 FGLLFIGTFFICQFVLMMQFLWKSIDELVGK-----GLSMEVMAQFFWYAGLMLVPQALP 69
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L+ +++ F NL +SEL +A GIS+ Q ++ SI++ + N + +
Sbjct: 70 LAILLSSLIAFGNLGESSELTAIKAAGISLIQAFRSLIIISIIISFSSFYFQNYVGPTAN 129
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
L K + + + + + +K E +
Sbjct: 130 MKIAQLWISMKQKSPELAIPEGIFY---DGIPNSNLYVQKKDMETGKLYGIMIYRMTGSY 186
Query: 189 KIIHRKDADLAII 201
+ AD ++
Sbjct: 187 EDQAIILADSGML 199
Score = 41.4 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 10/84 (11%), Positives = 22/84 (26%), Gaps = 2/84 (2%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ + L + I A + R + V + + Y +
Sbjct: 370 HRIEMISKFTLALSCLIFFFIGAPLGA-IIRKGGLGVPVIISVLVFIVYYILDNTGYRMA 428
Query: 330 KSGILLPVAA-ALIPVILTISLSI 352
+ G+ L P +L +
Sbjct: 429 RGGMWTIEFGKGLAPAVLIPLAAF 452
>gi|149201833|ref|ZP_01878807.1| permease YjgP/YjgQ [Roseovarius sp. TM1035]
gi|149144881|gb|EDM32910.1| permease YjgP/YjgQ [Roseovarius sp. TM1035]
Length = 373
Score = 63.7 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 47/340 (13%), Positives = 109/340 (32%), Gaps = 22/340 (6%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
++ +F L + + ++ + +++ A +P +I ++P
Sbjct: 1 MLSQFMVLFGFFALVLVSIFWINKAVRMFDRLIG-DGQPAWVFVEFTALTLPGVIGVVLP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ V L+ SEL + +A G S +L P V +++ + L+ + + S
Sbjct: 60 IAAFAAAVYVVNRLSSESELTVMQATGYSPLRLARPVFVFGVIVAVMMSLLAHFLIPSSL 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ + N + ++ +P + ++I + + F S D +
Sbjct: 120 SQLRLRLDEVSRNITAKLLSEGEFL---HPAPGVTFYIREITLSGELRDVFLSDRRDPEA 176
Query: 189 KIIHRKDADLAIIYNDKVKL-------KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + +L + + Q + + +I +
Sbjct: 177 PVTYTSSRAYLVQEGGGTRLVMVSGLAQNIRAEQNRLFTTYFDDFSYDISSLVRRDVVNL 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL--EFS 299
++ A E+++ Q + I L+ V L+ L S
Sbjct: 237 DEVAFAGTLEMLRDPEAVAARTGVSMGAVMAQMHGRITAALLCVIAALVGFCTLLVGAHS 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
R R + F L + I++S +L PV A
Sbjct: 297 RFGVWRQ-----VLLAFGLLVGLKIVESL----VLAPVLA 327
>gi|319944264|ref|ZP_08018540.1| permease YjgP/YjgQ family protein [Lautropia mirabilis ATCC 51599]
gi|319742559|gb|EFV94970.1| permease YjgP/YjgQ family protein [Lautropia mirabilis ATCC 51599]
Length = 369
Score = 63.3 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 45/362 (12%), Positives = 118/362 (32%), Gaps = 23/362 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLG-AMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++R + L + + ++ L N+ + S L A I
Sbjct: 2 IFRQSLRRDLNSVAGVMFATLFTILVTTSLIRFLNRATS-DRIASSDILPLIAFNAIGFI 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + ++V R SE+VI A G S+ + P ++ + V +
Sbjct: 61 PVLLVLTVFLSVLMVLARAWRDSEMVIWFASGQSLTAWIRPVMMFVLPYAAVVAAVTFVL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +L +++ D + + ++ + F+ + + P+ + +
Sbjct: 121 SPWANQQIAELRERFNQREDVSMVAPGQFRESTSSNRVFFV--ESMSPDKSTVSNVFVVQ 178
Query: 184 IDKKNKIIHRKDADLAII------YNDKVKLKKVVEYQ-YGRIPIDKNSTTLNIPIKMDG 236
N A + + L+ Y P L +++D
Sbjct: 179 ---HNGPRMVVVASRGGHVKIEENGDRFLVLEDGRRYDGTWGTPEYSLMEFLRYGVRLDP 235
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+ + Q S M S+ + + + + +P+ + + L+A +S
Sbjct: 236 -KPVNTQIESVRGMATPDLMQLSSPAA-------RGELAYRVGLPISVFVIALLAIPLSF 287
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
R + + G+ F + ++++S+ L + L + L++ +
Sbjct: 288 VNPRLGSS-VNLVIGVLIYFTYSNLNSVVRSWITQEKLSFGVGVWLTHALVLGLALYMFR 346
Query: 357 QK 358
++
Sbjct: 347 KR 348
>gi|313886927|ref|ZP_07820630.1| putative phage tail component, N-terminal domain protein
[Porphyromonas asaccharolytica PR426713P-I]
gi|332300780|ref|YP_004442701.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
DSM 20707]
gi|312923624|gb|EFR34430.1| putative phage tail component, N-terminal domain protein
[Porphyromonas asaccharolytica PR426713P-I]
gi|332177843|gb|AEE13533.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
DSM 20707]
Length = 678
Score = 63.3 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/184 (11%), Positives = 63/184 (34%), Gaps = 4/184 (2%)
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ +P L+ +++ F NL EL+ ++ G+ + +++ P V+ + + + +
Sbjct: 63 YVLPTAVPLGVLLASLMTFGNLGERLELLAMKSAGVPLSKIMKPLVILVTCIALGLFVYL 122
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ + + + + + I +
Sbjct: 123 DRGVQKASVRVYQILFSARYARPELEIPKGIFF--NGIDGYS-IYVGDKDAATSTLYNVM 179
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +++ AD + D+ KL ++ + G +S T IP ++
Sbjct: 180 IYDLSEQHTP-RIILADTGRLLMDESKLYLIMSLRSGESFEQLSSQTTLIPGSQASDERP 238
Query: 241 SEQF 244
+
Sbjct: 239 ASYI 242
Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 2/101 (1%)
Query: 255 KMSFSNKSNIFHNYRAETQ-FYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
+++ + + +YR Q + P+ + + A + R + +
Sbjct: 401 QIADTYYDDAASDYRVNAQEMHRKFTFPVACLLFFFVGAPLGA-IVRKGGVGTPMVLAVL 459
Query: 314 SGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I T SG + A + + + L +
Sbjct: 460 IFIIYYVIDTFGLKMINSGQIPVWAGMWLSSAVILPLGAFL 500
>gi|71064626|ref|YP_263353.1| hypothetical protein Psyc_0045 [Psychrobacter arcticus 273-4]
gi|71037611|gb|AAZ17919.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
Length = 416
Score = 63.3 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 49/377 (12%), Positives = 125/377 (33%), Gaps = 70/377 (18%)
Query: 40 MGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW 99
+ N IS + +P ++ I+P + ++VF L E+ + A GIS
Sbjct: 13 IAAEGNLDISLLFTIIGYNLPYFLELILPLAFFIALMLVFGRLYVDQEMAVINASGISRG 72
Query: 100 QL--LNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISN 157
+L L ++ ++ +G + ++ G + ++ W+ D+I
Sbjct: 73 RLGRLMTPLILALFVGEAALSIVGK--PWGVRSSENV---WQQQALTSAFDLIR-PNQFI 126
Query: 158 PQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKD---------------------- 195
+ + + + +D I + + K K+
Sbjct: 127 SSGNYHLYVGSLSDDKKQLQDVILIQSEPEKKGSAVKNNTAKTNTAKNSAMDVENNIDPE 186
Query: 196 --------------ADLAIIYNDKVKLKK-------------------VVEYQYGRIPID 222
A+ I D + L K Y+ G +
Sbjct: 187 TAEQLNIPELPNALANSTNISKDAITLAKRAQQVDTGNSGVTQLDLFQGRRYEVGAGSLK 246
Query: 223 KNST---TLNIPIKMDGFQKFSE-QFASRSFYEIIKKMSFSNKSNIFHNYR-AETQFYFL 277
N I + + +E +++ + + + + + + R A+ + +
Sbjct: 247 YNQVGFDRYRITLTESSKEVITEDNIETQAIGPLWQAATGNAQVGSNNAMRAAQGELGYR 306
Query: 278 IVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
+ +P +++ ++A ++ R + + + + II++ + GK G +
Sbjct: 307 LSLPWLMIIAPMLAVPLAQVRPRQGRWLRLFPSILLFVSCVLGIISLKNAVGK-GSVSVW 365
Query: 338 AAALIPVILTISLSILI 354
A A + ++ ++L++ I
Sbjct: 366 AYAWL-ILGFMALALYI 381
>gi|332662936|ref|YP_004445724.1| permease YjgP/YjgQ family protein [Haliscomenobacter hydrossis DSM
1100]
gi|332331750|gb|AEE48851.1| permease YjgP/YjgQ family protein [Haliscomenobacter hydrossis DSM
1100]
Length = 538
Score = 63.3 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/242 (13%), Positives = 90/242 (37%), Gaps = 13/242 (5%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITL 72
++ L ++ + I ++++ + L + R + +P L
Sbjct: 25 FIVAFSVSLFVLLMQMLWIYIDDLAGK-----GLGFFTVIELLSYRAVSFVPMALPLGIL 79
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
+ ++++ N EL ++ G+S+ +++ P ++ SI F+ + + +
Sbjct: 80 LSSVMLMGNFAEHYELSSMKSAGLSLVRIMRPMLIFSIFTVAFSWYCSDYLIPAANLKFG 139
Query: 133 DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN---- 188
+ + + D+ + ++ Q I K + + +D + N
Sbjct: 140 SRMWDIQQTKPALRLDVGVF---NDDFQGFTIHIGKKMSDGRTIKDVIIYDHSEANSGKY 196
Query: 189 KIIHRKDADLAIIYNDKVKLKKVVE-YQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASR 247
+I KD ++ + + + ++ YQ ++S+ P GF++F++ F
Sbjct: 197 TVITAKDGEMFTSEDGNIFVMRLRNGYQCIESRGYQSSSQSKYPFIRTGFKQFTKVFDLT 256
Query: 248 SF 249
F
Sbjct: 257 EF 258
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 273 QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTI-ITIMKSFGKS 331
+ I ++ I A + R + I FML+ I + ++
Sbjct: 423 DWQMKYSIAVVCFIFMFIGAPMGA-IVRKGGFGYPLLVAIVF-FMLFVILTIFCRKIAET 480
Query: 332 GILLPVAAALIPVILTISLSILI 354
++ AA +P ++ + L I +
Sbjct: 481 FVVSAYLAAWLPCLILMPLGIWL 503
>gi|329850877|ref|ZP_08265722.1| hypothetical protein ABI_37960 [Asticcacaulis biprosthecum C19]
gi|328841192|gb|EGF90763.1| hypothetical protein ABI_37960 [Asticcacaulis biprosthecum C19]
Length = 385
Score = 63.3 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 51/284 (17%), Positives = 99/284 (34%), Gaps = 18/284 (6%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
S + +PL+ I P V +V L E + A G+S+ Q+ +P
Sbjct: 32 GQSAWTFIRVTLLSMPLLSGLIFPIALFVGTLVALTRLQGEHEFTAAFASGMSLRQVSSP 91
Query: 105 FVVGS---ILLGIFTVLVINPIATSGEKIGI-----DLIQQWKDNGDKQKSDIIPWMQIS 156
+ +L + + L + P + + + DL+ G+ S + +
Sbjct: 92 IIRIGVYFLLFSLASNLFLQPWSARSMREELFKVKNDLVSTLVKEGEFSTSPSGLTIYVQ 151
Query: 157 NPQQDIFIG-AKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQ 215
Q+ + +P D T + ++ KI L I+ N + V +
Sbjct: 152 RIDQNSLLRQIYIRIPATEGGADRTYV--AREGKITQVGTESLLILRNGSTQ--WVSGGE 207
Query: 216 YGRIPIDKNSTTLNIPIKMDGFQKF--SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQ 273
I D+ S ++ D F SE++ F+ + + + +
Sbjct: 208 LDHITFDETSIPISDYFASDDSLNFKESERYLHELFFPNLALPGDGGNYERKNVGKLMAE 267
Query: 274 FYFLIVIPLMLVAMTLIA--ASVSLEFSRSNQP-RIIVAYGIFS 314
+ + PL ++ L+A A + FSR RI +A G+
Sbjct: 268 GHARLASPLYNLSFVLLAIMAVLGGGFSRGGYTQRIAIAAGVAV 311
>gi|325954392|ref|YP_004238052.1| permease YjgP/YjgQ family protein [Weeksella virosa DSM 16922]
gi|323437010|gb|ADX67474.1| permease YjgP/YjgQ family protein [Weeksella virosa DSM 16922]
Length = 500
Score = 62.9 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 5/137 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFV-IDLNEIQNQMGELPN-YSISRGAVLAATR 58
M L Y K ++ + + V E+ +G+ + +I
Sbjct: 1 MIKKLDGYVLKTFIGPFFFIFSILFFIFIVQFAWQEMDKYVGKGLDWLTIGELIFYMGIN 60
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
V IQ ++P L+ +I+ F EL +A G+S+ ++L+ V LL I
Sbjct: 61 V---IQLVLPLTILLGSIMTFGGFGERYELAAMKASGLSLVRILSSVFVLVALLSIGLYH 117
Query: 119 VINPIATSGEKIGIDLI 135
+ + ++ ++
Sbjct: 118 FGDKMMPYSQRKARQIM 134
Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 11/134 (8%)
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF----------HNYRAETQFYFLIVIPLM 283
+ F++ + S I + ++N F + R +Y +
Sbjct: 332 LVQFEQLEKNIQIISLNSAIANIDRDIQNNEFQIEEDNARKKYFSRINLHYYRNWSYAIT 391
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ I A + + + V I + I ++ KSG L P +A
Sbjct: 392 CIIFFFIGAPLGA-IVKKGGIGMPVIMSIIVFIFYFIINFTAENLTKSGNLHPFLSAWAA 450
Query: 344 VILTISLSILILLQ 357
+ + S+L+LL+
Sbjct: 451 NFIFLPFSVLLLLK 464
>gi|312129693|ref|YP_003997033.1| permease yjgp/yjgq family protein [Leadbetterella byssophila DSM
17132]
gi|311906239|gb|ADQ16680.1| permease YjgP/YjgQ family protein [Leadbetterella byssophila DSM
17132]
Length = 453
Score = 62.9 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 83/237 (35%), Gaps = 8/237 (3%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITL 72
++ TT + ++ +I E + ++ + +P+ + L
Sbjct: 16 FVLTTAIVVFIFLMRFLMIYFPEFIGKNLDMMVF-AKLFFYFTMMTIPMSLPLAT----L 70
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
+ ++ F NL SEL ++ GI I +L+ P ++ SI + IF++ N + G
Sbjct: 71 LATLMCFGNLGEKSELTAMKSAGIPITRLIVPTMILSIFVAIFSIGYNNTVNPWANLKGW 130
Query: 133 DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIH 192
L+ K + + I +K + + ++ + + +
Sbjct: 131 SLLYDIKTTKPALNIQEGIFYNQIPGYR---IKVEKKVGDGQSLKNVIVYDHNTGSGNKN 187
Query: 193 RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
AD +Y + + V E G + +S + FQK F SF
Sbjct: 188 ITVADSGRMYTINKESQLVFELYNGVNYSEGSSYNNMAQMTRYSFQKNKIVFLLSSF 244
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS 331
+ + + +AM LI AS+ R + V I + Y + + + K
Sbjct: 365 LERWNKVTTGFSCLAMFLIGASLGSIIKR-GGFGMPVLISIAFFILYYLLQQMGNKYAKE 423
Query: 332 GILLPVAAALIPVILTISLSILILLQ 357
G++ V A +P + I++ L++ +
Sbjct: 424 GLISAVVGAWMPFSVLITIGALLMRR 449
>gi|167752154|ref|ZP_02424281.1| hypothetical protein ALIPUT_00396 [Alistipes putredinis DSM 17216]
gi|167660395|gb|EDS04525.1| hypothetical protein ALIPUT_00396 [Alistipes putredinis DSM 17216]
Length = 492
Score = 62.9 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 40/250 (16%), Positives = 87/250 (34%), Gaps = 15/250 (6%)
Query: 9 FFKYYLKTTLY-FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
+K LK+ L +L I++FV+ +N + + EL + G ++ +I
Sbjct: 4 IYKLVLKSYLGPMVLTFFIIMFVLMMNVLWRYIDELVGKGLDPGTIIELLC--YATINMI 61
Query: 68 PFITLVVN----IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
P + I+ NL EL+ ++ G+S+ +++ P +V +L + + + N +
Sbjct: 62 PMALPLATLLAAIMTMGNLGENYELLAMKSAGMSLPKIMRPLLVVVSILAVGSFFIANNL 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI- 182
K I + + + + I E + D
Sbjct: 122 VPYANKKFFRTIYDIRQMNQTLEFQDGLFFNGIDGMS---IRVGHQNQETGLLTDVLIYD 178
Query: 183 -TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL--NIPIKMDGFQK 239
N D+ + +DK L+ + + R +NS+ ++ + F+
Sbjct: 179 NRNASGNMTTTVADSGYIRLSDDKRFLE-ITLFNGERYEQTRNSSQWYNKSSLQRNKFEL 237
Query: 240 FSEQFASRSF 249
+ F
Sbjct: 238 QKANISISGF 247
Score = 59.1 bits (142), Expect = 9e-07, Method: Composition-based stats.
Identities = 13/98 (13%), Positives = 37/98 (37%), Gaps = 1/98 (1%)
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
K+ + YR++ +++ + +P+ ++ LI A + R + + +
Sbjct: 356 ESQAKNALNQLYRSKVEWHKKLALPVTIIIFFLIGAPLGA-IVRRGGLGMPIVISVIFFV 414
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I + + K G + + ++I +
Sbjct: 415 IYYIISSSGEKMAKEGTWEAFYGTWLSAFVLAPVAIYL 452
>gi|241668815|ref|ZP_04756393.1| hypothetical protein FphipA2_08605 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254877347|ref|ZP_05250057.1| permease [Francisella philomiragia subsp. philomiragia ATCC 25015]
gi|254843368|gb|EET21782.1| permease [Francisella philomiragia subsp. philomiragia ATCC 25015]
Length = 360
Score = 62.9 bits (152), Expect = 7e-08, Method: Composition-based stats.
Identities = 49/363 (13%), Positives = 109/363 (30%), Gaps = 32/363 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y+ K + T L + +V L + Q I +P +
Sbjct: 2 ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQQAYS-QGLGIDSIIKFVILTIPGNV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLL---NPFVVGSILLGIFTVLVI 120
+ P + ++ F +E+ ++ A G++ Q++ V ++ TV+ I
Sbjct: 61 SLVAPIAIFLAIVICFGKYFANNEMFVTLAGGVTWMQIVKNTMKPVYALTIITFLTVMYI 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
NP++ + I + II I K + +D
Sbjct: 121 NPLSKQTQDIYQASLTAKALLSSITDDKII-----KTTDGK-VIYIKS--KSGNTLKDVF 172
Query: 181 SITIDKKNKIIHRKDADLAI-----------IYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
+ A +A ++ + K+ +Y T+
Sbjct: 173 LYMATDNSDEYKVVTAPVAEVITDKGAAYVDFHDAHIYTKEPKTSEYTYDTAKNAIYTIF 232
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
D ++ + E N ++ + +F+ I + ++ +L
Sbjct: 233 DTSDRDYNHDKVDRLYMHTLIE--------NFTDKDDGTVSRGEFFGRINNSISVIVASL 284
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
+A ++ R N+ + + + + + G L +P I I
Sbjct: 285 LALALCRLRPRQNKYAK-LLPSVVVLAVYLCSNMFVNTLMTGGKLPVWIGLWLPHIFFII 343
Query: 350 LSI 352
+I
Sbjct: 344 YAI 346
>gi|242240955|ref|YP_002989136.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech703]
gi|242133012|gb|ACS87314.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech703]
Length = 366
Score = 62.9 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/367 (12%), Positives = 125/367 (34%), Gaps = 39/367 (10%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETFKSQVAILFILLLIFFCQKLVRILGAAVD-GEIPTNLVLSLLGLGVPQMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ + L SE+ + A G+ LL ++ ++L + ++ + +
Sbjct: 61 QLILPLSLFLGLLMTYGKLYAESEITVMHACGLGKSVLLKASLLLAVLTVLLAMVNVLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGD---------KQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
+ + +++ + + N +Q D + + N F
Sbjct: 121 SPWSSRHQDEVLAEARANPGVASMVEGQFQQTQDGNSVLFVGNVSGQDFERIFMAQLHPR 180
Query: 175 IWEDFTSITIDKKNKIIHRKDAD------LAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ + D+ I+ R D + Y L+ + +
Sbjct: 181 ENTRPSVVVADR-GHIVARNDGAQIVTLNKGVRYEGTAMLRDFRITDFVNYQAVMGHQDV 239
Query: 229 NI-PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAM 287
I P + EQ ++ + + +F++ + + L ++ M
Sbjct: 240 AIDPTNV-------EQMDMKTLWSSPDIAA-------------RAEFHWRLTLVLSVLIM 279
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347
++ +S+ R + + + + + + + + ++S G L P+ + ++
Sbjct: 280 AVMVVPLSVINPRQGRV-LSMLPAMLLYLVFFLLQSSLRSNASKGKLDPLMWMWLTNLVY 338
Query: 348 ISLSILI 354
+++ +
Sbjct: 339 FGIAVAL 345
>gi|78777193|ref|YP_393508.1| permease YjgP/YjgQ [Sulfurimonas denitrificans DSM 1251]
gi|78497733|gb|ABB44273.1| permease YjgP/YjgQ [Sulfurimonas denitrificans DSM 1251]
Length = 339
Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 58/360 (16%), Positives = 123/360 (34%), Gaps = 32/360 (8%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ Y + L L + ++ L ++ + +I A L +P +
Sbjct: 2 KIVQNYIRESVSILFLSIFLPLFSIASIVFLIKLA-TYTAVIQLTIFEMAKLFFFMLPEL 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ +P V + F L+ +E+V+ A+GI ++ + ++ L +
Sbjct: 61 LFYTLPISFFVAITLALFKLSNDNEIVVLFALGIRPKLIIKTVLKPALFLCAILLFNFFV 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + + I K S + + + K +N + D
Sbjct: 121 LFPHAKTLSSNFISYKKSEAKFNLSASEF----GHKFGEWLLYIGK-DNQNETYSDVILF 175
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DGFQKF 240
+ +++ R A A I ND L+ + G D+ T +N D +
Sbjct: 176 NKKQDEEVLIR--AKNAQIINDSGILRLKLTSGEGYSYSDEKFTQINFETMFINDTMKTD 233
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+++ + Y + + S + + N I+ L V +AA++ + +R
Sbjct: 234 LDKYETPMEYWLPEAPSSKKRKMLISN----------ILFSLFPVLSIFLAATIGIVHAR 283
Query: 301 S--NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + + GI YT+ ++ S LL +A L IL +K
Sbjct: 284 HQKGKIYLFMFLGIIL---YYTLAVTLQLIIGSYALLVLAFGW-------LLGTYILYKK 333
>gi|322834556|ref|YP_004214583.1| permease YjgP/YjgQ family protein [Rahnella sp. Y9602]
gi|321169757|gb|ADW75456.1| permease YjgP/YjgQ family protein [Rahnella sp. Y9602]
Length = 364
Score = 62.6 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 56/368 (15%), Positives = 129/368 (35%), Gaps = 41/368 (11%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + K+ L +++ F L + + + + L VP +
Sbjct: 2 IIIRYLVRETFKSQFAILFILLLIFFCQKLVRVLGAAVD-GDIPTNLVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ +V ++ +F + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTDSEITVMHACGLGKRSLVIAALVLALFTSVFAGVNAIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGA-----------KKILPE 172
+ K +++ + K N + Q N +F+G+ ++ P
Sbjct: 121 SPWSSKHQDEVLAEAKANPSMAAMVEGQFQQAQNGNAVLFVGSVKGKEFHNVFLAQLRPN 180
Query: 173 NHIWEDFTSITIDKKNKIIHRKDA------DLAIIYNDKVKLKKVVEYQYGRIPIDKNST 226
+ K ++ R D D Y L+ + D +
Sbjct: 181 GNQRPSVVV---ADKGHMLQRADGSQQVMLDKGTRYEGTALLRDFRVTDF----TDYLAV 233
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+ +++D Q S+Q + ++ RAE + + + + +
Sbjct: 234 IGHQAVQLDPNQ--SDQMTMTQLW-----------NSNEPEARAELNW--RLTLIVSVFI 278
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
M L+ +S+ R + + + I + + + T ++S G G L P+ +L
Sbjct: 279 MALLVVPLSVVNPRQGRV-LSMLPAILLYLIFFLLQTSLRSNGAKGKLDPMLWMWGTNLL 337
Query: 347 TISLSILI 354
+L++++
Sbjct: 338 YFALALVL 345
>gi|255349244|ref|ZP_05381251.1| putative membrane transport protein [Chlamydia trachomatis 70]
gi|255503781|ref|ZP_05382171.1| putative membrane transport protein [Chlamydia trachomatis 70s]
gi|255507462|ref|ZP_05383101.1| putative membrane transport protein [Chlamydia trachomatis
D(s)2923]
gi|289525885|emb|CBJ15367.1| putative membrane transport protein [Chlamydia trachomatis Sweden2]
gi|296435471|gb|ADH17649.1| putative membrane transport protein [Chlamydia trachomatis E/150]
gi|296439188|gb|ADH21341.1| putative membrane transport protein [Chlamydia trachomatis E/11023]
Length = 354
Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 63/367 (17%), Positives = 128/367 (34%), Gaps = 46/367 (12%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
ILW+ YLKTT++ L + + + L EI + + + + + + A ++P +
Sbjct: 2 PILWKVLIFRYLKTTVFCTLSLICISIISSLQEIVSYIAK--DVPYATVFKVTAYQIPYL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I+P + +F L+ +++ +A G S ++ P ++ S +L F +
Sbjct: 60 LPFILPVSCFISAFTLFRKLSDNNQITFLKASGASQGMIIFPVLIASGVLCCFNFYTCSE 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A+ I + IFI I D I
Sbjct: 120 LASICRFQTGKEIANIAMTSPALLLQTL----QKKENDRIFI---AIDHCGKSKFDNVII 172
Query: 183 TIDKKNKIIHR--KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +I + + + + D V+ K V+ +IP+ + T N + + +
Sbjct: 173 ALKHNQEISNIGFIETIIPDVNKDSVQAKNVLV--ISKIPLFSEARTSNPN---EFYLET 227
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY-------------FLIVIPLMLVAM 287
++F I F+ KS + I I L+ M
Sbjct: 228 LDEF----LIPKITATLFAGKSYMKTRTDYLPWKQLIQDARLHLAEILRRIAIGLLCSTM 283
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLY-TIITIMKSFGKSGILLPVAAA---LIP 343
T ++ R +P + L+ + I GK+ + P++A L P
Sbjct: 284 TFSGLALGTYKPRFRKP--------VLIYALFPILNLIFLIVGKN-TIHPISAVMLFLFP 334
Query: 344 VILTISL 350
+L+ +
Sbjct: 335 QLLSWLI 341
>gi|308451108|ref|XP_003088547.1| hypothetical protein CRE_17759 [Caenorhabditis remanei]
gi|308246904|gb|EFO90856.1| hypothetical protein CRE_17759 [Caenorhabditis remanei]
Length = 341
Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 88/265 (33%), Gaps = 8/265 (3%)
Query: 35 EIQNQMGE--LPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
++ + G+ + S + R+P + I+P + ++VF L E+ +
Sbjct: 5 QLIKRFGQAAMGRVDPSILLSIIGFRLPEFLTLILPLGFFIGLMLVFGRLYVDHEMAVLN 64
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
GIS Q+ + +++ +++ ++ G + LI
Sbjct: 65 GSGISRIQVARLLIPLTVIYLCVQSVLMIWMSPWGIRQYEQLISTQAVRTGFDLVR---- 120
Query: 153 MQISNPQQDIFIGAKKILPENHIWEDFTSITI-DKKNKIIHRKDADLAIIYNDKVKLKKV 211
+ I A + + +D +K+ K A A + V
Sbjct: 121 PREFISSGAYTIYAGSLSEDRKNLKDIFFYQRAEKEGKPDVMILAKEATRIEIANETASV 180
Query: 212 VEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF-YEIIKKMSFSNKSNIFHNYRA 270
V+ GR T + ++ E F + ++ +SF ++
Sbjct: 181 VDLVEGRRYEIYPGTPKYSQTEFQSYRLRLENNKEAKFESDEVEGLSFGKLLENRNDPVV 240
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVS 295
++ + + +P ++ ++A ++
Sbjct: 241 ASELGWRLFVPFSIIVALMLATALC 265
>gi|225851251|ref|YP_002731485.1| putative permease, YjgP/YjgQ family [Persephonella marina EX-H1]
gi|225646479|gb|ACO04665.1| putative permease, YjgP/YjgQ family [Persephonella marina EX-H1]
Length = 337
Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 60/357 (16%), Positives = 122/357 (34%), Gaps = 23/357 (6%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL+RY K LK L + I++ L + + M + + +L + +
Sbjct: 2 KILYRYITKNILKNFLVLIAVFSIVIVSSQLLHLPSVMYHADITNFFK--LLFLMNLSFL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
Q++ F + ++ FN+ E+ + GI+ QL+ P VV S+++ +++V
Sbjct: 60 KFQLL-FAFFLSTALLGFNMRENREIYAVYSAGITKGQLIKPLVVISLIIFTVSLIVSMF 118
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + I + Q+S+ ++ I +K E + +E+
Sbjct: 119 VVPYANRERAKFITLNIKRYFLDAVQEKNFFQLSD---NVTIYTEK--KEGNRFENVFIY 173
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
++ A A LKK +IP +K L F E
Sbjct: 174 NRERGQT----ISAKEAFFDTTTFFLKKGYI----QIPDEKGFNILRFES--YRFNIDVE 223
Query: 243 QFASRSFYEIIKK-MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
S + K + K + RA + I+ P + + ++ V ++ +
Sbjct: 224 YLKKYSIEDYRNKDLLMIIKKSKKDKNRALSVLTDRILFPFPFLFIGVLGFMVGIKTQK- 282
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
++A + + + G + P A V+L SI +
Sbjct: 283 -GKDSVIATTVLISIVYLVLNFYFIKLIGKGKIDPSVYAF--VLLAYFSSITYYFYR 336
>gi|329964131|ref|ZP_08301297.1| permease, YjgP/YjgQ family [Bacteroides fluxus YIT 12057]
gi|328525651|gb|EGF52680.1| permease, YjgP/YjgQ family [Bacteroides fluxus YIT 12057]
Length = 633
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/193 (13%), Positives = 62/193 (32%), Gaps = 6/193 (3%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSISR--GAVLAATRVPLIIQQIIPF 69
LK+ +G + I + + + E+ + A ++ +P
Sbjct: 11 ILKSFCMLFMGTFFICLFIFMMQFLWRYVDEMVGKGLEMTVLAQFFFYSALSLVPASLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ ++ F N EL+ +A GIS+ +++ P ++ + + + N I +
Sbjct: 71 AILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIIFICFICLVSFYFQNVIGPQAQT 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
L+ K + + + + K + + D +K +
Sbjct: 131 KLWTLLLSMKQKSPEVDIPEGVFYDEIDGYN---LYVKHKDRKTGMLYDVLIYNFEKGFE 187
Query: 190 IIHRKDADLAIIY 202
AD +
Sbjct: 188 NAQIIKADSGRLE 200
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/102 (12%), Positives = 27/102 (26%), Gaps = 1/102 (0%)
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
S+S R T ++ + + L + I A + R + V +
Sbjct: 352 WSFKSYSISQTDTSLRRHMTSWHEKLTLSLACLIFFFIGAPLG-GIIRKGGLGMPVVVSV 410
Query: 313 FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I + G + + L +
Sbjct: 411 LIFIVYYIINNTGYKMARDGKWIVWMGMWTSTAILAPLGAFL 452
>gi|152990851|ref|YP_001356573.1| hypothetical protein NIS_1107 [Nitratiruptor sp. SB155-2]
gi|151422712|dbj|BAF70216.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
Length = 338
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 56/360 (15%), Positives = 127/360 (35%), Gaps = 30/360 (8%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP +L RY + ++ L + L + +I +I + + + S+ A L P
Sbjct: 1 MPKLL-RYLGNHLYESFLSYFLPLFGIASLIFFIKIVS-LTSIVQLSLVDLAKLYIFITP 58
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ IP + + + L+ E + ++GIS +++ + ++LL + ++
Sbjct: 59 QILFFTIPVVFFIAAVTALHKLSFDYETIAFFSLGISPTKIMRYLTLLAVLLSLLLFIIA 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ G+++ + K + + + F+ +K N ++E+
Sbjct: 119 YMLIPQGKQLEKGFYRYKKTEANINLKPSEY----GHKFGNWFVYVQKKDKNN-LFENVV 173
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
D + + + A N + LK + Y K KMD F
Sbjct: 174 LYNFDNEQE--RFITSKKATFDNSQYGLK-LTLYDGNAYTYKKGILDQITFTKMDLF--- 227
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ +++ I + + K+ + + F+ I + L ++ M A + + R
Sbjct: 228 --DTSTSYYFQYIDPIHYWEKAFLNKQRAFDMLFFLWIAL-LPVLGMPY-AGMIGIHHPR 283
Query: 301 --SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ V + +F F + + K+ +L A + L K
Sbjct: 284 YHKGGVFLKVLFALFIYFGFAFL--LSKTLYYYSLL--FMALW-------FFGGIYLFHK 332
>gi|298369121|ref|ZP_06980439.1| permease, YjgP/YjgQ family [Neisseria sp. oral taxon 014 str.
F0314]
gi|298283124|gb|EFI24611.1| permease, YjgP/YjgQ family [Neisseria sp. oral taxon 014 str.
F0314]
Length = 371
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/316 (13%), Positives = 114/316 (36%), Gaps = 14/316 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R F K T + + + ++ + + + + A++ + +
Sbjct: 2 IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAVDAVAALVGFWVI-GMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFALLIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + D + E+ I ++
Sbjct: 121 MPWAELRSREYAEILKQKQELSLVEAGE-FNSLGKRSDRVYFVETFDTESGIMKNLFLRE 179
Query: 184 IDKKN--KIIHRKDADLAIIYNDK-VKLKKVVEYQYGRIPIDKNSTTLN-IPIKMDGFQK 239
+DK II K+ + A+ N + ++L+ Y D N + + + + K
Sbjct: 180 LDKNGNDNIIFAKEGNFALTDNKRTLELRNGYRYSGKPGRADYNQVSFEHLSMIISTTPK 239
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ A R + K N + + + + + +P+ ++ ++++A +S
Sbjct: 240 IVDPIAHRRTIP-------TAKLFGSDNPQYQAELMWRLSLPISVLLLSMLAVPLSYFNP 292
Query: 300 RSNQPR-IIVAYGIFS 314
R+ I++A G+F
Sbjct: 293 RTGHTYNILIAIGMFL 308
>gi|325267813|ref|ZP_08134463.1| YjgP/YjgQ family permease [Kingella denitrificans ATCC 33394]
gi|324980694|gb|EGC16356.1| YjgP/YjgQ family permease [Kingella denitrificans ATCC 33394]
Length = 374
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/347 (12%), Positives = 108/347 (31%), Gaps = 34/347 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R F K T + + + ++ + + N +I L V +
Sbjct: 2 IYQRQFLKETTITAIAVFVVILAILVFTQGITLLGRAAG-GNVAIDAVGTLIGFWVLNLA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ I + G+ + Q + P + ++ L + ++ +
Sbjct: 61 PLLLVLTAYISTLTVLTRYWRDSEMAIWLSSGLGLRQWVKPVMTFALPLMLLIAVLQIFV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + ++ I+ ++
Sbjct: 121 LPWAELRSREYAELLKQKQNLSLVEQGKFTELGKKNGRIY-FVEQFDAHAGQLNHLFLRE 179
Query: 184 IDKKNKIIHRKDADLA-------------IIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI 230
I K A+ +++N L + + + I L
Sbjct: 180 IGDDGK-NQVIFAESGQFTLEGSDQHRTLVLHNGYRYLGNAGQGDFEQ--IAFKELRLAT 236
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
K + R+ I+ + + + + + I +P+ +V + +
Sbjct: 237 NTTP----KLANPIDHRNTIPTIQLLRSKDPV-------HQAELMWRISLPITVVVLCWL 285
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG--KSGILL 335
A +S RS ++ + GF L ++ +G KSG +
Sbjct: 286 AIPISYFNPRSGNSYHVL---VAVGFFLVYQNSLTWVYGAMKSGKIS 329
>gi|167646492|ref|YP_001684155.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
gi|167348922|gb|ABZ71657.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
Length = 378
Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY F+ L TL L + L + + + E S + A +P ++
Sbjct: 3 LIERYLFRQLLGPTLLATLALVALALLARSLSEFDVLIE-QRQSAMVFLKIIALALPQLL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P V +V L+ E+V+ A G+S W++++P + ++L + ++ + +
Sbjct: 62 SVILPIALFVAALVALNRLHTEQEIVVCFAGGMSRWRVISPAMRLAVLATLISLAMSLWV 121
Query: 124 ATSGEKIGIDLIQQWKD 140
A + + K
Sbjct: 122 APWSSRAIRETFFDMKS 138
>gi|94311740|ref|YP_584950.1| permease YjgP/YjgQ [Cupriavidus metallidurans CH34]
gi|93355592|gb|ABF09681.1| predicted permease [Cupriavidus metallidurans CH34]
Length = 372
Score = 61.8 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/358 (13%), Positives = 114/358 (31%), Gaps = 25/358 (6%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
+ L T + M+ + L M S + +L + ++
Sbjct: 7 LRRELAYTAGAVFLVMLTFMLTSLVIRILGMAANGKASPNDVLMLIGLATIGYLSILLSA 66
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIW-------QLLNPFVVGSILLGIFTVLVINP 122
+ ++V + SE+V+ + G+S+ Q PF V ++LLG+F N
Sbjct: 67 TLFISTLIVLTRWYKDSEMVVWFSSGVSLRDLIKPVLQFAAPFFVMALLLGLFAWPWANQ 126
Query: 123 IATSGEKIGID--LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ + ++ + I D+ A+ + N
Sbjct: 127 QSALFRDRFEQRGVLSMIASGRFIEPANGNYVLFIEGIDADMK-HARNVFVANAE-SGKI 184
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ + + + + N + +Y IP N +
Sbjct: 185 GVALAHQGQFE--------TMPNGDRLVVMEHGRRYAGIPGQLNYRIVEFDKYAVKVDNK 236
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ A+ ++ K + + + I +P++ +IA ++ R
Sbjct: 237 PQDAAA----DLPTKSRDTIDLIRDPTRENLGELLWRISLPILAFNFVMIAIPLAYVNPR 292
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ +V + +I + +++ +SG + A P+ L + L L++ +
Sbjct: 293 LGRYTPLVF-AVLIYLTYSNLINLAQAWVRSGAMSFWMAIW-PIHLAVFLCALVMFRY 348
>gi|15605574|ref|NP_220360.1| hypothetical protein CT839 [Chlamydia trachomatis D/UW-3/CX]
gi|76789584|ref|YP_328670.1| permease [Chlamydia trachomatis A/HAR-13]
gi|237803271|ref|YP_002888465.1| putative membrane transport protein [Chlamydia trachomatis
B/Jali20/OT]
gi|237805192|ref|YP_002889346.1| putative membrane transport protein [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255311680|ref|ZP_05354250.1| putative membrane transport protein [Chlamydia trachomatis 6276]
gi|255317981|ref|ZP_05359227.1| putative membrane transport protein [Chlamydia trachomatis 6276s]
gi|3329310|gb|AAC68436.1| hypothetical protein CT_839 [Chlamydia trachomatis D/UW-3/CX]
gi|76168114|gb|AAX51122.1| predicted permease [Chlamydia trachomatis A/HAR-13]
gi|231273492|emb|CAX10408.1| putative membrane transport protein [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231274505|emb|CAX11301.1| putative membrane transport protein [Chlamydia trachomatis
B/Jali20/OT]
gi|296436395|gb|ADH18569.1| putative membrane transport protein [Chlamydia trachomatis G/9768]
gi|296437326|gb|ADH19496.1| putative membrane transport protein [Chlamydia trachomatis G/11222]
gi|296438254|gb|ADH20415.1| putative membrane transport protein [Chlamydia trachomatis G/11074]
gi|297140755|gb|ADH97513.1| putative membrane transport protein [Chlamydia trachomatis G/9301]
gi|297748967|gb|ADI51513.1| Predicted permease [Chlamydia trachomatis D-EC]
gi|297749847|gb|ADI52525.1| Predicted permease [Chlamydia trachomatis D-LC]
Length = 354
Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 63/367 (17%), Positives = 128/367 (34%), Gaps = 46/367 (12%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
ILW+ YLKTT++ L + + + L EI + + + + + + A ++P +
Sbjct: 2 PILWKVLIFRYLKTTVFCTLSLICISIISSLQEIVSYIAK--DVPYATVFKVTAYQIPYL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I+P + +F L+ +++ +A G S ++ P ++ S +L F +
Sbjct: 60 LPFILPASCFISAFTLFRKLSDNNQITFLKASGASQGMIIFPVLIASGVLCCFNFYTCSE 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A+ I + IFI I D I
Sbjct: 120 LASICRFQTGKEIANIAMTSPALLLQTL----QKKENDRIFI---AIDHCGKSKFDNVVI 172
Query: 183 TIDKKNKIIHR--KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +I + + + + D V+ K V+ +IP+ + T N + + +
Sbjct: 173 ALKHNQEISNIGFIETIIPDVNKDSVQAKNVLV--ISKIPLFSEARTSNPN---EFYLET 227
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY-------------FLIVIPLMLVAM 287
++F I F+ KS + I I L+ M
Sbjct: 228 LDEF----LIPKITATLFAGKSYMKTRTDYLPWKQLIQDARLHLAEILRRIAIGLLCSTM 283
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLY-TIITIMKSFGKSGILLPVAAA---LIP 343
T ++ R +P + L+ + I GK+ + P++A L P
Sbjct: 284 TFSGLALGTYKPRFRKP--------VLIYALFPILNLIFLIVGKN-TIHPISAVMLFLFP 334
Query: 344 VILTISL 350
+L+ +
Sbjct: 335 QLLSWLI 341
>gi|189461471|ref|ZP_03010256.1| hypothetical protein BACCOP_02127 [Bacteroides coprocola DSM 17136]
gi|189431805|gb|EDV00790.1| hypothetical protein BACCOP_02127 [Bacteroides coprocola DSM 17136]
Length = 635
Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 6/193 (3%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYS--ISRGAVLAATRVPLIIQQIIPF 69
LK+ L G + I + + + EL I+ A +I +P
Sbjct: 11 VLKSFLLLFAGTFFICLFIFMMQFLWRYVDELVGKGLEINVLAQFFFYSGLTLIPLSLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ ++ F N EL+ +A GI + +++ P V+ + LG + N I +K
Sbjct: 71 AILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPVVLFCVFLGGISFFFQNIIGPRAQK 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
L+ K + + + I K + + +D +
Sbjct: 131 QLWTLLVSMKQKSPEVDIPEGVFYSDIDGYN---IYVKHKDRKTGLLKDILIYNFSDGFE 187
Query: 190 IIHRKDADLAIIY 202
H A +
Sbjct: 188 NAHIIWAAEGKLE 200
Score = 53.3 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 1/107 (0%)
Query: 248 SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRII 307
S SF K + ++ I + L + I A + R +
Sbjct: 346 SLSTDWDMKSFLTKDTDNSIRSHRSDWHKKITLSLACIIFFFIGAPLGA-IIRKGGLGMP 404
Query: 308 VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
V + + Y I + KSG + V + I+ L
Sbjct: 405 VVISVLIFVIYYIIDSGATRVAKSGEMNIVLGTWMSTIVLAPLGAFF 451
>gi|166154183|ref|YP_001654301.1| putative membrane transport protein [Chlamydia trachomatis 434/Bu]
gi|166155058|ref|YP_001653313.1| putative membrane transport protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335428|ref|ZP_07223672.1| putative membrane transport protein [Chlamydia trachomatis L2tet1]
gi|165930171|emb|CAP03655.1| putative membrane transport protein [Chlamydia trachomatis 434/Bu]
gi|165931046|emb|CAP06609.1| putative membrane transport protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 354
Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 63/367 (17%), Positives = 128/367 (34%), Gaps = 46/367 (12%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
ILW+ YLKTT++ L + + + L EI + + + + + + A ++P +
Sbjct: 2 PILWKVLIFRYLKTTVFCTLSLICISIISSLQEIVSYIAK--DVPYATVFKVTAYQIPYL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I+P + +F L+ +++ +A G S ++ P ++ S +L F +
Sbjct: 60 LPFILPASCFISAFTLFRKLSDNNQITFLKASGASQGMIIFPVLIASGVLCCFNFYTCSE 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+A+ I + IFI I D I
Sbjct: 120 LASICRFQTGKAIANIAMTSPALLLQTL----QKKENDRIFI---AIDHCGKSKFDNVII 172
Query: 183 TIDKKNKIIHR--KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ +I + + + + D V+ K V+ +IP+ + T N + + +
Sbjct: 173 ALKHNQEISNIGFIETIIPDVNKDSVQAKNVLV--ISKIPLFSEARTSNPN---EFYLET 227
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY-------------FLIVIPLMLVAM 287
++F I F+ KS + I I L+ M
Sbjct: 228 LDEF----LIPKITATLFAGKSYMKTRTDYLPWKQLIQDARLHLAEILRRIAIGLLCSTM 283
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLY-TIITIMKSFGKSGILLPVAAA---LIP 343
T ++ R +P + L+ + I GK+ + P++A L P
Sbjct: 284 TFSGLALGTYKPRFRKP--------VLIYALFPILNLIFLIVGKN-TIHPISAVMLFLFP 334
Query: 344 VILTISL 350
+L+ +
Sbjct: 335 QLLSWLI 341
>gi|254457924|ref|ZP_05071351.1| permease YjgP/YjgQ [Campylobacterales bacterium GD 1]
gi|207085317|gb|EDZ62602.1| permease YjgP/YjgQ [Campylobacterales bacterium GD 1]
Length = 339
Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/205 (17%), Positives = 65/205 (31%), Gaps = 8/205 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y L + + VI + ++ L +P I+
Sbjct: 4 LRKYIINNLYMIFLSMFMPLFAIASVI-FMIKLATYTAVIQLTLWDMVKLYLFVLPEILF 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + + F L+ +E+V+ A+GI ++ + LL + +
Sbjct: 63 YTLPLTFFIAATLSLFRLSTDNEMVVLFALGIHPKFIIKTLFKPAALLSALLMFNFLVLF 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + K S + D + K EN + D
Sbjct: 123 PHATTLSSNFVSYKKSEAKFNLSASEF----GHSFGDWLLYIGK-DNENETYSDVILFNK 177
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLK 209
+KK +II A A I ND L+
Sbjct: 178 NKKEEII--ISAKRAEIINDAGILR 200
>gi|283955209|ref|ZP_06372710.1| LOW QUALITY PROTEIN: putative integral membrane protein
[Campylobacter jejuni subsp. jejuni 414]
gi|283793246|gb|EFC32014.1| LOW QUALITY PROTEIN: putative integral membrane protein
[Campylobacter jejuni subsp. jejuni 414]
Length = 353
Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/341 (14%), Positives = 110/341 (32%), Gaps = 25/341 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I YF + + F + IDL + + N ++ L + VP
Sbjct: 3 IFSFYFRGLFKEFFYLFFFLLLGFYCGIDLLLNFKDLPKAANLNLLYIMFLCFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI-WQLLNPFVVGSILLGIFTVLVINP 122
++P + +V ++ R +E V A+G+S + +L PF+ I+ L
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSLYALGLSKNYVVLFPFLWALFFCCIYIGLNF-- 116
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ D + NG +++ +N F+ KI + ++
Sbjct: 117 ---TSFAYANDYKRNILKNGTIMTQSGEVFLKFNNN----FVYISKINNGQNSAQNIKIF 169
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQ--- 238
I+ N + A A + L+ + + + + ++
Sbjct: 170 NINDSN-LSSFISAKNAYFEGESWILRDGNITLLPKNYELANDGLKIKDFSQLKSLDGFK 228
Query: 239 -KFSEQFASRSFYEIIKKMSFSN--KSNIFHNYRAETQFYFLIVIPLML--VAMTLIAAS 293
K E AS S Y I + ++ + Y I P L M ++
Sbjct: 229 PKIIEGVASNSDYSISDALESFELFRAQNVNTDALRINLYKFIFTPFFLPHFLMLIMYYF 288
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL 334
+ +R + M++ ++ ++ ++ ++
Sbjct: 289 FPI-IARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVI 328
>gi|146329237|ref|YP_001210036.1| hypothetical protein DNO_1152 [Dichelobacter nodosus VCS1703A]
gi|146232707|gb|ABQ13685.1| conserved hypothetical membrane protein [Dichelobacter nodosus
VCS1703A]
Length = 349
Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/354 (12%), Positives = 110/354 (31%), Gaps = 41/354 (11%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I +RY + L + + ++ + + ++ + + S++ L +
Sbjct: 3 FPIFYRYMMREISALFLAITMILLTIIISFRFSSLLSRALD-GSVSLAAIGQLLIFQTAN 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I+ ++P ++ +++ L E+ A G S L+ P + + L + V+
Sbjct: 62 IVVILLPVAFILASVMTLSRLYGDCEINALFAGGCSKKHLMQPILYLVLPLAVILVINTL 121
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQ------------KSDIIPWMQISNPQQDIFIGAKKI 169
+ + L+ Q + + + +I+N Q I
Sbjct: 122 YLLPHVFERWDQLMAQSRQEALYSFFTPNQFQHLNAHNTLYTGDKINNGFQPFIIIQNDN 181
Query: 170 LPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR-IPIDKNSTTL 228
+ +W I ++ +H + A +D +Q + +L
Sbjct: 182 NEYSMLWSKRGEIQKNQPEHFLHLTQGNRAAWRDD---------FQPQNCLFSQFAHGSL 232
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
++ Q+ A+ + + + +F + P + V +
Sbjct: 233 HLSQSPPSAQQRLRSIATGALNQ---------------SLAHRAEFQKRL-NPALAVVIF 276
Query: 289 LIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT-IITIMKSFGKSGILLPVAAAL 341
A + L +R Q R F F +Y ++ I G + +
Sbjct: 277 SFAVPL-LAHTRPRQGRYQRLLPAFILFGIYINLLDIALKMFSRGQIPFLIGGW 329
>gi|218679464|ref|ZP_03527361.1| putative permease protein [Rhizobium etli CIAT 894]
Length = 138
Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 1/127 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L Y + + L LL + +++ + + N + + SI A LA +P I
Sbjct: 12 KLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPSI 70
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I ++PF ++ +N SEL + A G L+ P ++ + ++ +F+ V N
Sbjct: 71 IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAVVSVFSFFVDNV 130
Query: 123 IATSGEK 129
+ +
Sbjct: 131 VEPRAKT 137
>gi|145588807|ref|YP_001155404.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047213|gb|ABP33840.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 371
Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 52/353 (14%), Positives = 118/353 (33%), Gaps = 14/353 (3%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
+ L T + ++ + + L + VL + + ++
Sbjct: 7 LRRELSLTTGGVFLVLVTIMITTLVIRILGFAANGAINPEDVLVLISLATLGYLAVLLTV 66
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
V ++V + SE+++ A G+SI L+ P + + L I L+ + +
Sbjct: 67 SLFVATLIVLVRWYKDSEMIVWFASGLSISNLIRPILQFATPLIIIIALLALFVWPWANR 126
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
+ Q+++ D + + + ++ FI +++ + + ++ D KN
Sbjct: 127 ESTLISQRFQQRDDVSMVSSGQFRESARAERVFFI--EELDVDKNEVKNI--FVADSKNG 182
Query: 190 IIHRKDADLAIIYN-----DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ A I N V L Y+ D ++
Sbjct: 183 RVSVAVASAGYIQNSEDGEKSVVLHNGRRYEGQPTQPDFRILEFTDYTTKIRSKEALAPP 242
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ I ++ + + RAE + I +PLM + + LIA ++ R
Sbjct: 243 PRDRE-KTISELLNETEPTTINPNRAELLW--RIGLPLMALGLVLIAIPLAYVNPRLGNY 299
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ Y I + ++ + ++F G P+ L + IL++
Sbjct: 300 TAM-FYAILIYLIYSNLLNLTQNFVSQGKFGFFVGIW-PIHLLALVIATILIR 350
>gi|57242053|ref|ZP_00369993.1| probable integral membrane protein Cj0313 [Campylobacter
upsaliensis RM3195]
gi|57017245|gb|EAL54026.1| probable integral membrane protein Cj0313 [Campylobacter
upsaliensis RM3195]
Length = 350
Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/359 (12%), Positives = 119/359 (33%), Gaps = 24/359 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I + + YLK + +DL + N + + +
Sbjct: 3 IFFHFISFIYLKNFFILFFALVGFYCGVDLLLNFKDLPASANLILLYVLFVGF----SAV 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++ F + R +E V A+G+S +++ + ++L + +
Sbjct: 59 TYILPISLIFALVLSFLTMIRNNEFVSLYALGLSKNRVIIYPFLWALLFCFIYIGLN--- 115
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + NG K +++ + F+ K + + + ++ +
Sbjct: 116 -FTSFAYANEYKRSILKNGVLNKKSSDIFLKFNEE----FVYVKSL--DEGLAKELKIFS 168
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ K + H A A+ + L++ + Y + +N ++ + F
Sbjct: 169 L-KDGNLSHLIQAKRALFNENSWLLEEGNITYIPKEFVLGENGYKSENFANLETLEGFKP 227
Query: 243 QFA-------SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ A S Y+ + + + S + + Y LI P + LI
Sbjct: 228 KLAKSVASGKEYSIYDAYQSLILFD-SQGLNTRNVKIALYKLIFAPFFAPFLMLIMYYYF 286
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+R + +++ + + ++G++ ++P +L ++ I
Sbjct: 287 PVIARFFNLAFVAFVAFVVTLVVWGGLFVFLRLSENGVISGEFGIILPNLLLAFFALFI 345
>gi|289548597|ref|YP_003473585.1| permease YjgP/YjgQ family protein [Thermocrinis albus DSM 14484]
gi|289182214|gb|ADC89458.1| permease YjgP/YjgQ family protein [Thermocrinis albus DSM 14484]
Length = 351
Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 40/293 (13%), Positives = 99/293 (33%), Gaps = 16/293 (5%)
Query: 5 LWRYFFKYYLKTTL---YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
L RY + Y+K LLG +L + + Q S+ +P+
Sbjct: 2 LQRYILRLYIKAFGLSSAVLLGTGVLYLTFETLLVFRQ------KSLEIFFQYILLSLPV 55
Query: 62 IIQQIIPFITLVV--NIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
+ P ++ + ++ FF + L++ + G+ L+ P + S++L I + +
Sbjct: 56 AFLYLSPIVSWIALTMLIRFFIQRQLDRLIV--SFGVPPIHLVRPVIFFSLVLSILHIYM 113
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
I S ++ + +++K W + + ++ ++ D
Sbjct: 114 SFQIYPSFQRSLYTIEKEYKKGKKDTLLIKDQWFALKDGEKVVYSHIGLADVSKGTAYDV 173
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ K+ I A A + + + + ++ + + +
Sbjct: 174 -FLLYTKEGSIEATLRASKAFWKGNSLFIPDAYYEDLEKGGKFYGPMEVSF-LSLSNIRP 231
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ + +F E+I + + + Y + + + LM + M I A
Sbjct: 232 LASKLEHITFTELISVYGMAERLG-INRYAYLAEILRRLQLSLMPLLMVTIVA 283
>gi|32473921|ref|NP_866915.1| permease [Rhodopirellula baltica SH 1]
gi|32444458|emb|CAD74456.1| conserved hypothetical protein-putative permease [Rhodopirellula
baltica SH 1]
gi|327542994|gb|EGF29442.1| permease YjgP/YjgQ family protein [Rhodopirellula baltica WH47]
Length = 398
Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/394 (11%), Positives = 120/394 (30%), Gaps = 50/394 (12%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ L L + A++++ ++ L + L +P+ +Q +P
Sbjct: 6 LTRTILFEILRIFVVALVVLTLLILLIAVGRELFRKGLGAMAVLQLLPFAIPISLQHAVP 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L V+ + E+ +A GIS +LL P +V + LL V + + G+
Sbjct: 66 ATALFSVCCVYGRMAADGEISTVKASGISPLRLLQPAIVFAALLSPVAVYCSDMAVSWGK 125
Query: 129 K--------IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK-KILPENHIWEDF 179
D+ + + SD + + I + + +
Sbjct: 126 PGVKRVVLLSIEDIAYRLLERDHSYTSDHGFSIHVREIDGRRMISPRVTVRGKGDDAFTV 185
Query: 180 TSITIDKKNKIIHRKDADLAIIY--------------------------NDKVKLKKVVE 213
T+ + +++ +++ ++ + ++ V
Sbjct: 186 TA----SEGQLMMDEESLSLVLKLVDSQVIRGKGLQGDFYGEHQFEIPIGNALEETDVST 241
Query: 214 YQYGRIPIDK-NSTTLNIPIKMDGFQKFSEQFASRSFY---------EIIKKMSFSNKSN 263
+P+ + L + F S E + S +S+
Sbjct: 242 RSPSELPLRLIRNERLRQRERTHAKIGELAAFTGFSLLTSRPAEIGGEKSSAIQSSLQSS 301
Query: 264 IFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT 323
R +T+ + L+ A +++ S+ + + + Y +
Sbjct: 302 RHRLTRLQTEPWRRWAEGFTCFFFVLVGAPLAIVAKTSDYWTTFGMCFLPTILVYYPLYL 361
Query: 324 IMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ K+G + P I ++ + ++++ +
Sbjct: 362 LGLDQAKAGDMPP-YGVWIGNVVLSGVGMMLIAR 394
>gi|254882243|ref|ZP_05254953.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|319643195|ref|ZP_07997823.1| hypothetical protein HMPREF9011_03424 [Bacteroides sp. 3_1_40A]
gi|254835036|gb|EET15345.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|317385099|gb|EFV66050.1| hypothetical protein HMPREF9011_03424 [Bacteroides sp. 3_1_40A]
Length = 632
Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 78/240 (32%), Gaps = 6/240 (2%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
LK+ L +G + I + + + EL + S A +I +P
Sbjct: 11 ILKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVLAQFFFYSALTLIPLSLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ ++ F N EL+ +A GI + +++ P ++ L + N IA +
Sbjct: 71 AILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPLIIFCTFLCCTSFYFQNVIAPKAQI 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
+ L+ K + + + + I K+ E + +D +
Sbjct: 131 KLLTLLVSMKQTSPELDIPEGVFY---DEIEGYNIYVKQKDRETGMLKDVLIYNFSDGFE 187
Query: 190 IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
H A + K + G + S T++ + F E+ F
Sbjct: 188 NAHIIWASEGKMEMTADKQHLYLHLYNGEQFENLKSQTISSNNVPYRRETFREKHTIIEF 247
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ E ++ I + L + I A + R + V + + Y I +
Sbjct: 365 RKHEADWHKKITLSLSCLIFFFIGAPLGA-IIRKGGLGMPVVVSVLIFVIYYIIDSGATR 423
Query: 328 FGKSGILLPVAAALIPVILTISLSILI 354
KSG + V + I+ +
Sbjct: 424 VAKSGEMNMVLGVWMSTIVLAPIGAFF 450
>gi|294776418|ref|ZP_06741896.1| putative membrane protein [Bacteroides vulgatus PC510]
gi|294449744|gb|EFG18266.1| putative membrane protein [Bacteroides vulgatus PC510]
Length = 640
Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 78/240 (32%), Gaps = 6/240 (2%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
LK+ L +G + I + + + EL + S A +I +P
Sbjct: 19 ILKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVLAQFFFYSALTLIPLSLPL 78
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ ++ F N EL+ +A GI + +++ P ++ L + N IA +
Sbjct: 79 AILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPLIIFCTFLCCTSFYFQNVIAPKAQI 138
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
+ L+ K + + + + I K+ E + +D +
Sbjct: 139 KLLTLLVSMKQTSPELDIPEGVFY---DEIEGYNIYVKQKDRETGMLKDVLIYNFSDGFE 195
Query: 190 IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
H A + K + G + S T++ + F E+ F
Sbjct: 196 NAHIIWASEGKMEMTADKQHLYLHLYNGEQFENLKSQTISSNNVPYRRETFREKHTIIEF 255
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ E ++ I + L + I A + R + V + + Y I +
Sbjct: 373 RKHEADWHKKITLSLSCLIFFFIGAPLGA-IIRKGGLGMPVVVSVLIFVIYYIIDSGATR 431
Query: 328 FGKSGILLPVAAALIPVILTISLSILI 354
KSG + V + I+ +
Sbjct: 432 VAKSGEMNMVLGVWMSTIVLAPIGAFF 458
>gi|212690931|ref|ZP_03299059.1| hypothetical protein BACDOR_00419 [Bacteroides dorei DSM 17855]
gi|237712585|ref|ZP_04543066.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237726895|ref|ZP_04557376.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|265752264|ref|ZP_06088057.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|212666163|gb|EEB26735.1| hypothetical protein BACDOR_00419 [Bacteroides dorei DSM 17855]
gi|229435421|gb|EEO45498.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229453906|gb|EEO59627.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263237056|gb|EEZ22526.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 632
Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 78/240 (32%), Gaps = 6/240 (2%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
LK+ L +G + I + + + EL + S A +I +P
Sbjct: 11 ILKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVLAQFFFYSALTLIPLSLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ ++ F N EL+ +A GI + +++ P ++ L + N IA +
Sbjct: 71 AILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPLIIFCTFLCCTSFYFQNVIAPKAQI 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
+ L+ K + + + + I K+ E + +D +
Sbjct: 131 KLLTLLVSMKQTSPELDIPEGVFY---DEIEGYNIYVKQKDRETGMLKDVLIYNFSDGFE 187
Query: 190 IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
H A + K + G + S T++ + F E+ F
Sbjct: 188 NAHIIWASEGKMEMTADKQHLYLHLYNGEQFENLKSQTISSNNVPYRRETFREKHTIIEF 247
Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ E ++ I + + + I A + R + V + + Y I +
Sbjct: 365 RKHEADWHKKITLSISCLIFFFIGAPLGA-IIRKGGLGMPVVVSVLIFVIYYIIDSGATR 423
Query: 328 FGKSGILLPVAAALIPVILTISLSILI 354
KSG + V + I+ +
Sbjct: 424 VAKSGEMNMVLGVWMSTIVLAPIGAFF 450
>gi|150002748|ref|YP_001297492.1| hypothetical protein BVU_0142 [Bacteroides vulgatus ATCC 8482]
gi|149931172|gb|ABR37870.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
Length = 632
Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 78/240 (32%), Gaps = 6/240 (2%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
LK+ L +G + I + + + EL + S A +I +P
Sbjct: 11 ILKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVLAQFFFYSALTLIPLSLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ ++ F N EL+ +A GI + +++ P ++ L + N IA +
Sbjct: 71 AILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPLIIFCTFLCCTSFYFQNVIAPKAQI 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
+ L+ K + + + + I K+ E + +D +
Sbjct: 131 KLLTLLVSMKQTSPELDIPEGVFY---DEIEGYNIYVKQKDRETGMLKDVLIYNFSDGFE 187
Query: 190 IIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
H A + K + G + S T++ + F E+ F
Sbjct: 188 NAHIIWASEGKMEMTADKQHLYLHLYNGEQFENLKSQTISSNNVPYRRETFREKHTIIEF 247
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ E ++ I + L + I A + R + V + + Y I +
Sbjct: 365 RKHEADWHKKITLSLSCLIFFFIGAPLGA-IIRKGGLGMPVVVSVLIFVIYYIIDSGATR 423
Query: 328 FGKSGILLPVAAALIPVILTISLSILI 354
KSG + V + I+ +
Sbjct: 424 VAKSGEMNMVLGVWMSTIVLAPIGAFF 450
>gi|224825295|ref|ZP_03698400.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
gi|224602216|gb|EEG08394.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
Length = 366
Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 44/363 (12%), Positives = 122/363 (33%), Gaps = 34/363 (9%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ T + + + ++ + + E + + A++ + + ++
Sbjct: 7 LTRELTFTAVSVFVVLLAILVTTQTINLLGRAAEGRIANEAVAALIGFWTL-GLFPLLLI 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ +VV L R E+ + A G+S+ + P + ++ L I + I E
Sbjct: 66 LTVFISVLVVLTRLWRDHEMAVWLASGVSLKDWVKPVLRFAVPLAILVGISSLLIGPWAE 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI---------GAKKILPENHIWEDF 179
+ + + K + D + + + ++ F+ A + + +
Sbjct: 126 QRSHEYAEILKQHEDVSAISPGIFKESHSSRRVYFVENFSGKNGSAANIFMQDMSKGKVA 185
Query: 180 TSITIDKKNKIIHRKDADL-AIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQ 238
+ K +I+ + + ++ N + + E Y + S +N +
Sbjct: 186 SI--FAKSGRIVTNEQGERLLLLENGRRYVGNPGEADYEVAEFARYSVVINDQPQFIPSG 243
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ S + + S+K+ +P+ V + L+A +S
Sbjct: 244 NSRQTMTSAAL-------ALSDKAGDKAELGWRV------SMPISTVVLALLAIPLSYFN 290
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA---LIPVILTISLSILIL 355
RS ++ + Y + + ++ +L +A L P +L + +++ +L
Sbjct: 291 PRSGHTYNLLLAL-----LAYFVYQNALTLCRNWVLQDRLSAYAMLAPHMLMLLVALGML 345
Query: 356 LQK 358
+
Sbjct: 346 AYR 348
>gi|315638229|ref|ZP_07893411.1| integral membrane protein [Campylobacter upsaliensis JV21]
gi|315481765|gb|EFU72387.1| integral membrane protein [Campylobacter upsaliensis JV21]
Length = 350
Score = 60.6 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/295 (14%), Positives = 92/295 (31%), Gaps = 24/295 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I + + YLK + IDL + N + + +
Sbjct: 3 IFFHFISSIYLKNFFILFFALVGFYCGIDLLLNFKDLPASANLILLYVLFVGF----SAV 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+P + ++ F + R +E V A+G+S + ++ L + + +
Sbjct: 59 TYILPISLIFALVLSFLTMIRNNEFVSLYALGLSKNR----VIIYPFLWALLFCFIYVGL 114
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + NG K +++ + F+ K + S+
Sbjct: 115 NFTSFAYANEYKRSILKNGVLNKKSSDIFLKFNEE----FVYVKSLDEGVAKELKIFSL- 169
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKV-VEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
K + H A A+ + L++ + Y + +N ++ + F
Sbjct: 170 --KDGNLSHLIQAKRALFNENSWLLEEGNITYIPKEFALGENGYKSENFANLETLEGFKP 227
Query: 243 QFA-------SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ A S Y+ + + + S + + Y LI P + LI
Sbjct: 228 KLAKSVASGKEYSIYDAYQSLILFD-SQGLNTRNVKITIYKLIFAPFFAPFLMLI 281
>gi|260891451|ref|ZP_05902714.1| hypothetical protein GCWU000323_02662 [Leptotrichia hofstadii
F0254]
gi|260858834|gb|EEX73334.1| hypothetical protein GCWU000323_02662 [Leptotrichia hofstadii
F0254]
Length = 222
Score = 60.6 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 13/169 (7%)
Query: 196 ADLAIIYNDKVKLKKVVEYQY---GRIPIDKNSTTLNIPIKM------DGFQKFSEQFAS 246
A+ A ++LKKV Y + G + IPI +K ++
Sbjct: 49 AENAKFDPGIIRLKKVKGYAFDKDGNSQVSALYQEQEIPITTFFRENKKEVKKSRKEMNI 108
Query: 247 RSFYEIIKK-MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
+ E K+ + + +A+ + Y ++ P + + +S+ RS +
Sbjct: 109 KELNEFYKQNIKNPEEKET--ALKAQVEIYQRLIGPFASTFLCWLGVLLSVGHRRSGR-G 165
Query: 306 IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I + F + + K + A +P + + I
Sbjct: 166 ISFGISLIVIFGYIGMASYAKIMVLKNNVPANIAMWVPNFVLFIMCIYF 214
>gi|148651871|ref|YP_001278964.1| permease YjgP/YjgQ family protein [Psychrobacter sp. PRwf-1]
gi|148570955|gb|ABQ93014.1| permease YjgP/YjgQ family protein [Psychrobacter sp. PRwf-1]
Length = 494
Score = 60.6 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/187 (16%), Positives = 65/187 (34%), Gaps = 5/187 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+P IL RY + TT L ++L+ + + + + +P
Sbjct: 21 LPVILRRYMTRQVASTTALVLGFLVVLLLGGRMIRYFG-IAAEGRLDVGLLFSIIGYNLP 79
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ ++P + ++VF L E+ + GIS +L + ++L + +
Sbjct: 80 YFLELVLPLSFFIGLMLVFGRLYVDHEMAVLNGSGISRGRLARLIIPLILVLFVLEAGLS 139
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
G K + QQ + I P I++ +++G + +D
Sbjct: 140 LYGKPWGVKNSESIWQQQSLSSAFDL--IRPQTFINSDDYHLYVG--SMNDNKTELQDVI 195
Query: 181 SITIDKK 187
I K
Sbjct: 196 LIQTAKD 202
>gi|114768924|ref|ZP_01446550.1| Predicted permease [alpha proteobacterium HTCC2255]
gi|114549841|gb|EAU52722.1| Predicted permease [alpha proteobacterium HTCC2255]
Length = 407
Score = 60.6 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 15/210 (7%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY FK + +F ++ + I + + E L+ +P ++
Sbjct: 36 LDRYLFKQLIGPFAFFCFIISGILLLNQALGIIDIVTENGQ-PAYIVFELSFLILPKVLI 94
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV---IN 121
I + ++++ L EL++ +IG S +L PF++ IL+ LV +N
Sbjct: 95 TAISISGFIASVLIINRLYNEEELLVMMSIGRSFIELSKPFLLFGILIASLLFLVVHNLN 154
Query: 122 PIATSGEKIGIDLIQQ-------WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENH 174
P A S + I++ D ++ + ++ +IL E
Sbjct: 155 PYAHSKFIEAQERIKKEYVTQIIKPDQFISYQNKYTFFFGDKGNNGEL----SEILIEEQ 210
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYND 204
I D T I K ++I KD++ ++ N
Sbjct: 211 ITPDTTLTHIAKNGQVIANKDSNALLLRNG 240
>gi|323978945|gb|EGB74025.1| permease YjgP/YjgQ family protein [Escherichia coli TW10509]
Length = 356
Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 4/186 (2%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + + + ++G +I +F + ++ + +V + ++ ++
Sbjct: 7 YIMRG-TRRLVLIIVGFLIFIFASYSVQRYLTEAANGTLALDVVLDIVFYKVLIALEMLL 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P V V + SE+ A G S +L + +I L IF L+
Sbjct: 66 PVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWA 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
L QQ + D ++ + + + I ++ + +N+ D T
Sbjct: 126 YAQIYQLEQQSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDVLIYTSTAN 182
Query: 188 NKIIHR 193
I R
Sbjct: 183 RTRIFR 188
>gi|304413752|ref|ZP_07395196.1| inner membrane component LptF of LptABCFG lipopolysaccharide
transporter [Candidatus Regiella insecticola LSR1]
gi|304283843|gb|EFL92237.1| inner membrane component LptF of LptABCFG lipopolysaccharide
transporter [Candidatus Regiella insecticola LSR1]
Length = 367
Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 40/322 (12%), Positives = 102/322 (31%), Gaps = 40/322 (12%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ +Y K K+ + L +++ L I ++ +P +
Sbjct: 2 IITKYIIKKTFKSQMAILFILLLIFISQKLIAILSETVN-GEIPTHLILSFLGLGLPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ + ++ E+ + A G S L+ ++ ++ +
Sbjct: 61 QLVLPLSLFLGLLITYGKMHTEREITVMHACGFSQNSLILVALILAMGTAALAAINTLWF 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGA-----------KKILPE 172
++ ++ N + + + +F+GA ++ P+
Sbjct: 121 MPWSVTYQGKILNDFRANPTLAALIEGQFQSSMDGKTVLFVGAVDGKKFDHIFLAQLQPD 180
Query: 173 NHIWEDFTSITIDKKNKIIHRKDA------DLAIIYNDKVKLKKVVEYQYGRIPIDKNST 226
I + I R D D Y L+ + + N
Sbjct: 181 GSRRPSIV---IAENGYIAERPDGSQIVTLDKGTRYEGTALLRDFRITDFKNYQVTINPQ 237
Query: 227 TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
++ SEQ + RS + + S +F++ + + ++
Sbjct: 238 SITQNTN------TSEQMSIRSLWHSSHPDARS-------------EFHWRLTLITSVII 278
Query: 287 MTLIAASVSLEFSRSNQPRIIV 308
M L+A +S+ R ++ ++
Sbjct: 279 MALLAVPLSVVNPRQSRTLNML 300
>gi|149927923|ref|ZP_01916173.1| hypothetical protein LMED105_07563 [Limnobacter sp. MED105]
gi|149823362|gb|EDM82595.1| hypothetical protein LMED105_07563 [Limnobacter sp. MED105]
Length = 379
Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/304 (10%), Positives = 90/304 (29%), Gaps = 23/304 (7%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATR-VPLIIQQ 65
F K + +T + ++ L Q G++ N + +L + +P +
Sbjct: 7 FRKDFAQTAGATFVALFTIIVTTVLVRTLGQAAGGKVDNAEVFTLILLGGLQYLPAALVI 66
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIAT 125
+ + V + E+ A G+S++ L+ P + ++ L + ++ +
Sbjct: 67 T----VFIAVMGVVSRAFKEQEMTAWFASGVSLFSLVRPVLRFAVPLTVLALVCSVWLTP 122
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ ++ D K + + + F+ ++ E+ +D
Sbjct: 123 WAKAELDAAKDRFAKRSDVSKVSAGQFRESGEGNRVFFV--ERQSEVTKQVENV--FVVD 178
Query: 186 KKNKIIHRKDADLAIIYND-----KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
K A + D + L ST
Sbjct: 179 SKGDTRTVVSAARGSVEVDASGQPYLVLSGGRRATLDGTGERFTSTEFET-----YGLAI 233
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ +++ + ++ + E + + +P+ + + L+A ++ R
Sbjct: 234 DNTLGAAPSFQLQHRRVDLLIADFSPAAQGELLW--RVSLPMSALVLGLLAIPLAFVNPR 291
Query: 301 SNQP 304
Sbjct: 292 GGNS 295
>gi|268679754|ref|YP_003304185.1| permease YjgP/YjgQ family protein [Sulfurospirillum deleyianum DSM
6946]
gi|268617785|gb|ACZ12150.1| permease YjgP/YjgQ family protein [Sulfurospirillum deleyianum DSM
6946]
Length = 341
Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 60/352 (17%), Positives = 130/352 (36%), Gaps = 40/352 (11%)
Query: 6 WRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQ 65
RY K++ + ++ +I + + + L +P +
Sbjct: 5 SRYLLKHFGALFSSLFFILFFITSIVFFIKIT-ALTAIIQMNFLELGTLYIYLLPRTLVY 63
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGIS---IWQLLNPFVVGSILLGIFTVLVINP 122
+P + + FNL++ +E ++ +G + I +L G LL I + V+ P
Sbjct: 64 TLPITFFIALCITLFNLSKENETIVLFTLGYNPQKIARLFLLLATGLSLLLILNIFVLIP 123
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I+ ID ++ + + + S+ + +K + H + T
Sbjct: 124 ISKELNSNFIDY-KKAEAKFNIKASEFGQKFSQW------LVYIEKSDDQKH-FSGVTLY 175
Query: 183 TIDKKNKIIHRKDADLAIIYND----KVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGF 237
+ N+ A+ A+I N ++ L++ +++ + I++ N ++I +
Sbjct: 176 QVPTPNEDERLILANNALIENTDGKLRLNLEEGKIFEFKKNEIEQINFERMHINSQPKAG 235
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+S E + ++K E F+ LI L +A TLIA S+ +
Sbjct: 236 IG-----TIQSVKEYWNGVFVNSKRA------YELAFFLLIA--LFPLASTLIALSIGIV 282
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTIS 349
R N+ I +A + F+ + T+ P +A P+++ I
Sbjct: 283 TYRYNKGGIYIAM-FATIFIYFAAATLFS------TWHPQSA---PLVVFIL 324
>gi|121605070|ref|YP_982399.1| permease [Polaromonas naphthalenivorans CJ2]
gi|120594039|gb|ABM37478.1| permease YjgP/YjgQ family protein [Polaromonas naphthalenivorans
CJ2]
Length = 373
Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/320 (14%), Positives = 105/320 (32%), Gaps = 27/320 (8%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
K + L+ + +V I L Q + S + A + I+
Sbjct: 7 IRKELARAFGATLVVLITIVMTIVLIRTLGQASR-GSISPQDVMLYMAYSGLGRLPTILT 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ + + R SE+V+ G + L P + + + L+ +
Sbjct: 66 ISLFIAMVSTLTRMYRDSEMVVWFTSGQGLAGFLRPLFHFAWPVLLVITLMALFVWPWTN 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF--------- 179
+ D+ +++ GD + I P + + + + L +
Sbjct: 126 QQTKDMQSRYQQRGDLDR--ITPGVFQESSSGNRVFFIDRDLAGEKASTNVFIAATEKGK 183
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+SIT + +I R DA ++ N + +L+ +E +I K + +
Sbjct: 184 SSITTAQSGRIESRGDARFLMLSNGQ-RLENDLEKSALKISDFKEYGVKTNDSGL--LGE 240
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + S +IK + SN + + + + L +A +++
Sbjct: 241 SAPEAKLLSTRALIKDPTRSNLG----------ELAWRLGLALSAFNFVFLAVALAKVNP 290
Query: 300 RSNQPRIIVAYGIFSGFMLY 319
R + ++ + F++Y
Sbjct: 291 RGGRSGNMMF--VVLAFVVY 308
>gi|15834847|ref|NP_296606.1| hypothetical protein TC0227 [Chlamydia muridarum Nigg]
gi|270285013|ref|ZP_06194407.1| hypothetical protein CmurN_01133 [Chlamydia muridarum Nigg]
gi|270289036|ref|ZP_06195338.1| hypothetical protein CmurW_01188 [Chlamydia muridarum Weiss]
gi|301336411|ref|ZP_07224613.1| hypothetical protein CmurM_01210 [Chlamydia muridarum MopnTet14]
gi|7190266|gb|AAF39099.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
Length = 354
Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 6/164 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
ILW+ YLKTT++ L + + + L EI + + + + + + A ++P +
Sbjct: 2 PILWKVLIFRYLKTTVFCTLSLICISIISSLQEIVSYIAK--DVPYATVFRVTAYQIPYL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I+P + +F L+ +++ +A G S ++ P ++ S +L F +
Sbjct: 60 LPFILPASCFISAFTLFRKLSDNNQITFLKASGASQGMIIFPILITSGILCCFNFYTCSE 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGA 166
+A+ I + IFI
Sbjct: 120 LASICRFQTGKEIANIAMTSPALLLQTL----QKKENDRIFIAI 159
>gi|320539289|ref|ZP_08038959.1| putative conserved inner membrane protein [Serratia symbiotica str.
Tucson]
gi|320030681|gb|EFW12690.1| putative conserved inner membrane protein [Serratia symbiotica str.
Tucson]
Length = 396
Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 48/319 (15%), Positives = 108/319 (33%), Gaps = 34/319 (10%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ +Y + LK+ + L +++ F +L + + + + + L VP +
Sbjct: 34 IIIKYLVRETLKSQIAILFILLLIFFCQNLVRVLGDVVD-GDVPTNLVLSLLLLGVPKMA 92
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSIL---LGIFTVLVI 120
Q I+P + ++ F L SE+ + A G+ L+ ++ +IL + V
Sbjct: 93 QLILPLSLFLGLLMTFGRLYTESEITVMHACGLGKRTLIIAAMILAILTSAVAAVNVFWA 152
Query: 121 NPIATS------GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF--IGAKKILPE 172
NPIA+S E I + K D + I N + F + ++
Sbjct: 153 NPIASSYQDVVVSEAKANPSIAGLVEGQFKPSQDGNAVVFIGNVKGSTFNNVFLAQLRTN 212
Query: 173 NHIWEDFTSIT---IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN 229
I+ + D + L+ + +
Sbjct: 213 GTQRPSVVVAEHGNINPQKDGSQVVTLDKGTRFEGTALLRDFRITDFNNYKAVIGHRAVA 272
Query: 230 IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTL 289
+ SEQ + ++ ++ + A +F++ + + + +V M L
Sbjct: 273 VDNTQ------SEQMSMKTLWQ-------------SDDPDARAEFHWRLTLVVSVVLMAL 313
Query: 290 IAASVSLEFSRSNQPRIIV 308
+ +S+ R + ++
Sbjct: 314 LVVPLSVVNPRQGRVLSML 332
>gi|254418640|ref|ZP_05032364.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
gi|196184817|gb|EDX79793.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
Length = 397
Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/199 (13%), Positives = 66/199 (33%), Gaps = 7/199 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY F+ + + + + + E S+ L +P ++ I
Sbjct: 25 RYLFRQISLPVVAACASLAGIGILSQSLDQLEVIVERGQ-SVWVMVKLTLLALPQLLAVI 83
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P V ++ + R EL + A G++ WQ+++P + L+ I +++
Sbjct: 84 LPIGLFVGALIALTRMQREQELTAAFAGGMTRWQVISPAARLAFLVLILNLVMTLFAQPW 143
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ + + + + ++Q P + + +N + ++
Sbjct: 144 AQREARNQAFAIRTDLAALLVEEGQFVQ--GPDGLTVY--VQQIEQNGLLKN--LFVYLD 197
Query: 187 KNKIIHRKDADLAIIYNDK 205
K A A D
Sbjct: 198 DGKSTQNWSAAEARFGRDA 216
>gi|313682233|ref|YP_004059971.1| permease yjgp/yjgq family protein [Sulfuricurvum kujiense DSM
16994]
gi|313155093|gb|ADR33771.1| permease YjgP/YjgQ family protein [Sulfuricurvum kujiense DSM
16994]
Length = 340
Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 35/205 (17%), Positives = 73/205 (35%), Gaps = 7/205 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY L + VI + ++S A L VP ++
Sbjct: 4 LRRYILSNLSILFFSIFLPLFAIASVI-FMIKLATYTAVIQITLSEMAKLYLFVVPELLF 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P +V + + L+ +E+V+ ++GIS + V ++LL + + +
Sbjct: 63 YTLPIAFVVGGALALYRLSNDNEMVVVFSLGISPLFVARILAVPALLLSLLLFVNFVVVT 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ I + +++ + + D + K P++ ++ D I
Sbjct: 123 PYIKIISANFLEKKRAEAKFNLGASEF----GHHFGDWMLFINKNDPQSRVFGDV--ILF 176
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLK 209
+K K AD A + N + L+
Sbjct: 177 NKSMKDEILIKADKAELINKQGVLQ 201
>gi|325278206|ref|ZP_08143700.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
gi|324096660|gb|EGB95012.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
Length = 89
Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 35/87 (40%)
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
F+ ++ P++ A+ L+A S RS V G+ GF+ ++ +
Sbjct: 1 WLAFWTKVLQPMVTAALVLMAISFIFGPLRSVTLGQRVFTGVLVGFVFRIGQDLLGPSSQ 60
Query: 331 SGILLPVAAALIPVILTISLSILILLQ 357
P+ A +IP + + +L +
Sbjct: 61 VFGFPPLLAVVIPAGICALAGVWLLRR 87
>gi|302879722|ref|YP_003848286.1| permease YjgP/YjgQ family protein [Gallionella capsiferriformans
ES-2]
gi|302582511|gb|ADL56522.1| permease YjgP/YjgQ family protein [Gallionella capsiferriformans
ES-2]
Length = 377
Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 45/356 (12%), Positives = 122/356 (34%), Gaps = 16/356 (4%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATRVPLIIQ 64
R + + + +V + L + G+L + +A +
Sbjct: 22 RALVLEFAGNGVLVFAILLGIVVISQLIRFLGEAVSGKLAVDGVLALLGFSALN---YLS 78
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++ + ++ R SE+V+ + GI + + + P + + + L+ ++
Sbjct: 79 VLLSMSLFIAILLTLSRCYRDSEMVVWFSAGIGLTRWIRPVALFAAPVVTVIALLSLVLS 138
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
K D Q + + + + + F+ + S+
Sbjct: 139 PWAMKRADDFKAQLESRDELATLTPGVFRESGQSDRVYFVETVDVGNGRIGNIFVRSVQN 198
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
+ ++ R + + N L + +Y P +++ ++ + + E
Sbjct: 199 SQMGTMVAR-EGLQQTMPNGDRFLVLLNGTRYEGTPGERDYRI----VEFERYAMRIESA 253
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAET-QFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
AS+ + + S + R + + + +P+ ++L+A S+S R+ +
Sbjct: 254 ASKQL--LPNVRTLSTLELWRNPTRWNLSELEWRLGLPISAAVLSLLAISLSYVNPRAGR 311
Query: 304 PRIIVAYGIFSGFMLYT-IITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+V + +MLY+ +I++ ++ G L P L + ++ L +
Sbjct: 312 SLNLVLAMVL--YMLYSNMISVTNAWVGQGKLSPGIGLWGIHALMLLITALFFYYR 365
>gi|225011756|ref|ZP_03702194.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
MS024-2A]
gi|225004259|gb|EEG42231.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
MS024-2A]
Length = 463
Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/182 (18%), Positives = 69/182 (37%), Gaps = 10/182 (5%)
Query: 21 LLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFF 80
+ +I F + ++E+ + I + P +I ++P L+ +++ +
Sbjct: 1 MFIFIIQTFWLFIDELAGK-----GLDIIIISKFLLYYSPKLIPLVLPLSVLLASLMTYG 55
Query: 81 NLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKD 140
L+ E ++ GIS+ + L + +LLGI T N + GE +L +
Sbjct: 56 TLSENYEFAAMKSTGISLQRALLALTIFHVLLGIGTFYFSNHVIPYGELKSYNL----RR 111
Query: 141 NGDKQKSDIIPWMQISNPQQDIFIG-AKKILPENHIWEDFTSITIDKKNKIIHRKDADLA 199
N K + + I N +I I A+K + ED ++ A+
Sbjct: 112 NLAKLEPTLAIREGIFNEIGEINIKVARKYGDNDRFLEDVIIHEYTPNSENNIVIKAERG 171
Query: 200 II 201
+
Sbjct: 172 EM 173
Score = 39.8 bits (92), Expect = 0.73, Method: Composition-based stats.
Identities = 9/85 (10%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ + + + LI A++ R + + + + I K+
Sbjct: 342 HKITLQEKYTLIFASLFLFLIGAALGA-IIRKGGLGLPLVLSVLIFLTYHYIGLFGKNAA 400
Query: 330 KSGILLPVAAALIPVILTISLSILI 354
+ + P A + + +I++
Sbjct: 401 EDNSISPFFATWLSTFILAPFAIIL 425
>gi|298207835|ref|YP_003716014.1| hypothetical protein CA2559_06260 [Croceibacter atlanticus
HTCC2559]
gi|83850473|gb|EAP88341.1| hypothetical protein CA2559_06260 [Croceibacter atlanticus
HTCC2559]
Length = 456
Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 8/147 (5%)
Query: 33 LNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISR 92
++E+ + EL + I + A P +I ++P LV +I+ F N E +
Sbjct: 10 ISELAGR--ELDGFIILKLLSFVA---PKLIPLVLPLTILVTSIMTFGNFAENYEFAAMK 64
Query: 93 AIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPW 152
+ GIS+ + + ++ L I N + E ++L + +
Sbjct: 65 SSGISLQRAMRGLIIFIAALSITAFFFANNVIPRAEFEFVNLRKNIAKLKPAAAISEGMF 124
Query: 153 MQISNPQQDIFIGAKKILPENHIWEDF 179
+I + + +K D
Sbjct: 125 NEIGDINIKV---GEKSGDRGQYLTDV 148
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 1/103 (0%)
Query: 252 IIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYG 311
+I S K + E + V+ + + A + R + +
Sbjct: 320 LIDTRENSLKQINIKLNKYEIALHEKYVLAFACFILFFVGAPLGA-IIRKGGMGLPMVIA 378
Query: 312 IFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I + I K+ + G + P A + I+ + L +
Sbjct: 379 ILLFLTYHFIGIFAKNSAEDGSISPFIATWLSTIIMLPLGVYF 421
>gi|89898055|ref|YP_515165.1| hypothetical protein CF0248 [Chlamydophila felis Fe/C-56]
gi|89331427|dbj|BAE81020.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
Length = 367
Score = 59.5 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 60/373 (16%), Positives = 134/373 (35%), Gaps = 43/373 (11%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGEL--------PNYSISRGAVLAATRV 59
Y +K Y+ T + L +I++ I I + + + S+ + +++
Sbjct: 2 YIWKRYVLTKFWLSLVFLIVLAFIFYASIHHSLHAIKGNATPLASGASLKLSILYYLSQI 61
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
L + +IP + V + F++ E+++ +A G+S+ L P +V S ++ +
Sbjct: 62 ALKAEFLIPQLVAVATTLTLFSMQNKREVLLLQASGLSLKSLTAPLIVSSFIITLLLYAN 121
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ EKI + DK D +P + + + + I +
Sbjct: 122 FQWLHPICEKISTTKEHIDRGTLDKA-QDKVPVLYLKD---QTVLLYSSIEQKTLTLNKV 177
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
I K K I+ + LA V+ + + + L+ M F +
Sbjct: 178 FWI---KNPKTIYTME-KLAFTTPSLPIGLDVIRFSG----TESGNMELSEFSDMKEFPE 229
Query: 240 FSEQFASRSFYEII-----KKMSFSNKSNIFHNYRAETQ-------------FYFLIVIP 281
F F +I ++S S ++ ++ FY++++ P
Sbjct: 230 IEFGFYDNPFSKIFTAGGKNRLSESFRAIPWNATGLGLSTTVPQRILSLLSTFYYMLISP 289
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
L ++ +++A + L FSR + + + + + S +L
Sbjct: 290 LACISAMILSAYLCLRFSRVPTVTLAYLVPLGTINTFFVFLKAGIVLSNSSVLPT----- 344
Query: 342 IPVILTISLSILI 354
+PV+L +++ I
Sbjct: 345 LPVMLFPLIALAI 357
>gi|88810478|ref|ZP_01125735.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
gi|88792108|gb|EAR23218.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
Length = 357
Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 32/310 (10%), Positives = 86/310 (27%), Gaps = 31/310 (10%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L + + ++P + ++ L R SE+ A G+ +L
Sbjct: 35 GDIPANLLFTLLGLKALANLGTVLPASFFLAIVMAMGRLYRDSEMAALAACGVGPRELCR 94
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++ ++ L + + E ++ + + + Q ++
Sbjct: 95 ALLLLAVPLALLVGYLSLVFGPWAEGTAQRIVAEAQQSNRLQGVRPGRFL--DLGAGSAV 152
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAI----IYNDKVKLKKVVEYQYGRI 219
I E I ++ + + A A L + +Y +
Sbjct: 153 AYVASIDAEG-IMHGI-FARAEQDGQPV-LIAAARARREVDPETGARFLVLLNGQRYQGV 209
Query: 220 PIDKNSTTLNI--------PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE 271
P + + + F + S + + A
Sbjct: 210 PGQRAWRVIRFGQHGLSLGGSEPAQFSAARDGLTSWQLWH-------------SEDRAAW 256
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS 331
Q + + +PL+ + +TL A +S R + + + + + ++ + +
Sbjct: 257 AQLQWRLSMPLVTLVLTLFALPLSKSAPRDGRYAK-LLSAVLVYVLYFNLLKVAQGLLSQ 315
Query: 332 GILLPVAAAL 341
G
Sbjct: 316 GRYPVGLGLW 325
>gi|168701113|ref|ZP_02733390.1| hypothetical protein GobsU_16419 [Gemmata obscuriglobus UQM 2246]
Length = 410
Score = 59.5 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 1 MPGI-LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRV 59
M G L R F ++ L L LV V+ + +Q+G S+++ V
Sbjct: 1 MFGTTLNRMIFWELVRVFLLSLGSLTGLVLVVMSVQQASQLG----LSLAQLVRAVPLLV 56
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSI 110
P I+ IP TL VV+ L +E++ +A G+ ++ ++ P ++ +
Sbjct: 57 PSILPIAIPATTLFAACVVYGRLAHDNEVIALKAAGVHLFGIVKPTLLLGV 107
Score = 42.5 bits (99), Expect = 0.091, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ + + + + + L+ V + +RS+ + + + + Y ++ G
Sbjct: 319 LQAEVHARPALAVSCLVFALVGCPVGVYLNRSDYLSTFMMCFLPTLLVYYPLLLAGTDMG 378
Query: 330 KSGILLPVAAALIPVILTISLSILI---LLQK 358
KSG L I+ ++ +L+ LL++
Sbjct: 379 KSGRLPMALGCWAADIVMGAVGVLLAWRLLRR 410
>gi|325124204|gb|ADY83727.1| hypothetical protein BDGL_003141 [Acinetobacter calcoaceticus
PHEA-2]
Length = 350
Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/181 (13%), Positives = 57/181 (31%), Gaps = 11/181 (6%)
Query: 27 LVFVIDLNEIQNQM------GELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFF 80
++ ++ L + ++ S + R+P + I+P + ++VF
Sbjct: 2 VISLLTLIMMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLTLILPLGFFIGLMLVFG 61
Query: 81 NLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKD 140
L E+ + G+S QL + +++ +F +++ + G + L
Sbjct: 62 RLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVFQSVLMLWMTPWGLREFEKLTTTQAV 121
Query: 141 NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI-DKKNKIIHRKDADLA 199
+ I A + + +D K++K A A
Sbjct: 122 RTGFDLVR----PREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAKEDKPDVMILAKEA 177
Query: 200 I 200
Sbjct: 178 T 178
>gi|301325676|ref|ZP_07219137.1| conserved hypothetical protein [Escherichia coli MS 78-1]
gi|300847531|gb|EFK75291.1| conserved hypothetical protein [Escherichia coli MS 78-1]
gi|323966511|gb|EGB61944.1| permease YjgP/YjgQ family protein [Escherichia coli M863]
gi|327251764|gb|EGE63450.1| hypothetical protein ECSTEC7V_3616 [Escherichia coli STEC_7v]
Length = 356
Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDVLIYTSTANRTRIFR 188
>gi|330443789|ref|YP_004376775.1| YjgP/YjgQ family protein [Chlamydophila pecorum E58]
gi|328806899|gb|AEB41072.1| YjgP/YjgQ family protein [Chlamydophila pecorum E58]
Length = 357
Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 6/163 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
ILW+ YLKT L+ + + + L EI + + + + LAA ++P +
Sbjct: 2 PILWKVLIFRYLKTILFCASSLIFISIISSLQEIVVYIAK--DVPYATVFRLAAYQIPYL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I+P + +F L+ +++ RA G S ++ P + SI + +
Sbjct: 60 LPFILPASCFISAYTLFKGLSDNNQITFLRASGASQGIIIFPILTISIAICCANFYTCSE 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
+A+ I N ++ +FI
Sbjct: 120 LASICRYKSCKEIA----NMAMSSPPLLLQTLQKREDSRVFIA 158
>gi|114326913|ref|YP_744070.1| permease [Granulibacter bethesdensis CGDNIH1]
gi|114315087|gb|ABI61147.1| permease [Granulibacter bethesdensis CGDNIH1]
Length = 404
Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/351 (10%), Positives = 100/351 (28%), Gaps = 27/351 (7%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
P I+ Y + ++ + L L + + + +V +
Sbjct: 38 PLIIQTYLIREIMRPFVPVLAVLAGLFGSFSAAGFLSDAVN-GLLPTGSIIQMVSLKVLI 96
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS---IWQLLNPFVVG-SILLGIFTV 117
++ +IP + ++ F LN E+ A+ + IW+++ + ++++G ++
Sbjct: 97 ALEVLIPISLYLSVLLAFGRLNSDQEITAMAALRVQPERIWRIVLSLCLAMAVVVGALSL 156
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ + + + I P+ + I
Sbjct: 157 FARPWAYARLHALSDQAHVSLNTDAMEAGTFYI------GPKGNRVIFFTHRQGPEEPAS 210
Query: 178 DFTSITIDKKNKIIHRKDADLA-IIYN------DKVKLKKVVEYQYGRIPIDKNSTTLNI 230
+ A A + ++ L Y++ R +
Sbjct: 211 GVFVQLWSPDR--MEIISARQAMTLRPASPDAKSQILLSDAHIYRFNRSGEGNDEVLDAA 268
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+D ++ A + + + S + + P+ + + L+
Sbjct: 269 ETVLDIQPNKADAAAYSAVATASRLLLGSPSPADIA------ELQWRFSTPVSTLLLGLL 322
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+S R I + F Y + T +++ + G++ +
Sbjct: 323 GIPMSRSKPR-QSRYARFGAAILAYFSYYLLCTSARTWVQHGVVPAIPGIW 372
>gi|297170848|gb|ADI21867.1| hypothetical protein [uncultured verrucomicrobium HF0130_25O04]
Length = 243
Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/233 (13%), Positives = 67/233 (28%), Gaps = 38/233 (16%)
Query: 159 QQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQY-- 216
Q K+ + D+ +R A A + K+ +
Sbjct: 9 GQSRIWYFKEFDETKGQGRGVQVYSYDQNGSDSYRIRAKSATWNENGWLFKEGRFLGFPS 68
Query: 217 ---------------------GRIPIDKNSTTLNIPIKMDGFQKFSEQ------------ 243
G +++ + I + E+
Sbjct: 69 AKGIPVPKSDGIGIDWEGNPVGFENVEQARASPRINKRFSALFLPLEEDDPFPHAALRQK 128
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI-VIPLMLVAMTLIAASVSLEFSRSN 302
+ ++ E+ +S + N Y + + L P + L ++ L +S
Sbjct: 129 PNTLNYGELGTLLSEYPRQNSAKLYPYKLRRAQLFWSGP-SCLVAVLCGLALGLR-RKST 186
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
I + + Y T + G+ GI+ A+ +P +L I L+I ++
Sbjct: 187 SAGRIAGFSLLGMLFFYLAKTFCDALGEKGIVSEWLASGVPYLLVIILAICLM 239
>gi|124267132|ref|YP_001021136.1| putative transmembrane protein [Methylibium petroleiphilum PM1]
gi|124259907|gb|ABM94901.1| putative transmembrane protein [Methylibium petroleiphilum PM1]
Length = 363
Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/359 (11%), Positives = 125/359 (34%), Gaps = 14/359 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
L R + + T + + + + + L + G + ++ A +
Sbjct: 6 TLRRDLARSFGATLVVIMTIVITMFLIRTLGQAAG--GSVAAQDVALLLGYVAL---ENL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+ + + + R SE+VI A G+ + + + P + + L + L+ +
Sbjct: 61 PTILSLSLFIAVVTTLTRMYRDSEMVIWFASGVGLLRFVPPVLRLTAPLLLLVALLALFV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + +L +++ D + + S+ ++ E +I + +
Sbjct: 121 WPWGNRQIAELKDRYQRRSDVARVAPGQF--QSSADGKRTFFIERDTGEGNIARNVFVLE 178
Query: 184 IDKKNKIIHRKDADLAIIY-NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
++ A I + ++ V + G+ +T + D ++ +
Sbjct: 179 RKPDSE--SVTSARTGRIEMDGD---QRFVVLESGQRNDINLATGERKLAQFDSYRVLAG 233
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ S + K + + R + + I + + + + L+ ++ R
Sbjct: 234 EAVSSGADNLPPKARSTWDLLTQPSNRHFGELAWRIGLAVGGINLVLLGIGLAGGNPRRA 293
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQKEDG 361
+ + + + + + ++ + +++ SG L L+ + L++ +L +E G
Sbjct: 294 GSW-NLLFALLAFVVYFNLLNLSQAWVASGKLEIGIVLLLIHGGSFVLAVSLLWWRERG 351
>gi|89898056|ref|YP_515166.1| hypothetical protein CF0249 [Chlamydophila felis Fe/C-56]
gi|89331428|dbj|BAE81021.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
Length = 357
Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 60/162 (37%), Gaps = 6/162 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
ILW+ YLKT + L + + + L EI + + + + L A ++P +
Sbjct: 2 PILWKVLIFRYLKTITFCTLSLICISIISSLQEIVSYIAK--DVPYPTVLRLTAYQIPYL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I+P + +F L+ +++ +A G S ++ P ++ S + +
Sbjct: 60 LPFILPISCFISAFTLFRGLSDNNQITFLKASGASHGIIIFPALMVSCAICCINFYTCSE 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
+A+ I N ++ IFI
Sbjct: 120 LASICRFQTCKEIA----NMAMTSPTLLLQTLQKKENNRIFI 157
>gi|160871958|ref|ZP_02062090.1| permease [Rickettsiella grylli]
gi|159120757|gb|EDP46095.1| permease [Rickettsiella grylli]
Length = 376
Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 62/176 (35%), Gaps = 3/176 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL+RY + L + L +++ + NQ+ ++ + L P +
Sbjct: 2 ILFRYLTREVLTSLLLITSLLFLILISNEFVHYLNQVA-YGKFAANILWKLIVLESPRFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++PF + + + L E+ + A G S+ QL + LL + +
Sbjct: 61 AILLPFSLCLAILFTYGRLYADYEMTVLNACGFSLGQLTRLSLPFIFLLFFIVAGLSLWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ S L+ Q + + P Q I +K+ ++H ++
Sbjct: 121 SPSLLSYRNKLLTQ--TGIAIELQTLQPGRFQQTNQGHRIIYVEKVSTDHHTVKNI 174
>gi|85706342|ref|ZP_01037436.1| Predicted permease [Roseovarius sp. 217]
gi|85669115|gb|EAQ23982.1| Predicted permease [Roseovarius sp. 217]
Length = 374
Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 47/339 (13%), Positives = 110/339 (32%), Gaps = 22/339 (6%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
++ +F L + +V++ + +++ A +P +I ++P
Sbjct: 1 MLSQFMVLFGFFALVLVSIVWINKAVRMFDRLIG-DGQPAWVFVEFTALTLPGVIGVVLP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ V L+ SEL + +A G S +L P +V +++ + L+ + +
Sbjct: 60 IAAFAAAVYVVNRLSSESELTVMQATGYSPLRLARPVLVFGVIVAVMMSLLAHYLIPGSL 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ N + ++ +P I ++I + + F S D +
Sbjct: 120 SQLRLRQDEVSRNISAKLLSDGEFL---HPAPGITFYIREITQTGELRDVFLSDRRDPEA 176
Query: 189 KIIHRKDADLAIIYNDKVKL-------KKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + + +L + + Q + + +I +
Sbjct: 177 PVTYTSSRAYLVQEGGGTRLVMVSGLAQNIRADQNRLFTTYFDDFSYDISSLVSRDVVNL 236
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL--EFS 299
++ A + E+++ +Q + I L+ V L+ L S
Sbjct: 237 DEVAFANTLEMLRDPEAVAARTGTSYGTVMSQTHGRITAALLCVIAALVGFCTLLVGAHS 296
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
R R + F L I I++S ++ PV
Sbjct: 297 RFGVWRQ-----VLLAFGLLVGIKIVESI----VVAPVL 326
>gi|203288235|ref|YP_002223250.1| hypothetical protein BRE_818 [Borrelia recurrentis A1]
gi|201085455|gb|ACH95029.1| conserved hypothetical integral membrane protein [Borrelia
recurrentis A1]
Length = 429
Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 53/379 (13%), Positives = 119/379 (31%), Gaps = 66/379 (17%)
Query: 46 YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF 105
S + + +P+++ PF L+ I+ + +E++ R+IGISI LL PF
Sbjct: 48 VSFFKAFIFVIYSLPMVVALSPPFAALLSVILTIYRFKLNNEILAFRSIGISISNLLTPF 107
Query: 106 VVGSI---LLGIFTVLVINPIA---------------------TSGEKIGIDLIQQWKDN 141
+ + L+ + P+ K DLI +
Sbjct: 108 LKLGVIIALVSFILNDFLLPLGSIGRLKIFNDIKEEIPHLILKPYSSKQYGDLIFVSGEK 167
Query: 142 GDKQKSDIIPWMQISNPQQDIFIGAKKILPEN------HIWEDFTSITIDKKNK-IIHRK 194
+ ++ + D AK++ + I + SI + + K
Sbjct: 168 SETGYKNVTFFDNTRLKGYDRIFMAKELNIQKENHQVYFILNNVLSIALTEDEKGFYDYF 227
Query: 195 DADLAIIYNDKVKLKKVVEYQYGRIP-----------IDKNSTTLNIPIK---------- 233
AD D+V Y + ++ + K
Sbjct: 228 YADRMKYSIDQVTFSDGWVLTYVPPSQMSMRDVFKLVVRQSKLVEELNTKNYLEEDLLNM 287
Query: 234 ------MDGFQKFSEQFASRSFYEIIKKM-----SFSNKSNIFHNYRA---ETQFYFLIV 279
++ + F S E + + +++ ++ N +FY I
Sbjct: 288 NFANIYLNYLYDKNNIFDENSIIENLNYVYNLSVNYAPYEDLIANRSYAFFYLEFYQKIS 347
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
+PL ++ +A + + ++ + + I + + K + P+
Sbjct: 348 LPLSVLFFIFLAFGMGMYSNKKYSIILELVISILICVFYWAMFMGGKVYTVQHAPNPILV 407
Query: 340 ALIPVILTISLSILILLQK 358
++P IL + +++ L+
Sbjct: 408 IILPNILLMVAGLILFLRL 426
>gi|307721207|ref|YP_003892347.1| permease YjgP/YjgQ family protein [Sulfurimonas autotrophica DSM
16294]
gi|306979300|gb|ADN09335.1| permease YjgP/YjgQ family protein [Sulfurimonas autotrophica DSM
16294]
Length = 340
Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/205 (14%), Positives = 69/205 (33%), Gaps = 7/205 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y + + L ++ VI L ++ + SI L +P I+
Sbjct: 4 LQKYILNNFSALFMSIFLPLFVIASVIFLIKLS-TYTAVIQLSIWEMGKLYLFVLPEILF 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + + F L+ +E+++ A+GI ++ F + +L + ++
Sbjct: 63 YTLPITFFIAATLSLFKLSNDNEIIVIFALGIEPGFIVKTFFKPAFILSLLLAFDFLVVS 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + + K + N D + + + + F
Sbjct: 123 PHTTVLSKNFLSYKKSEAKFNLAASEF----GNSFGDWLLYIGEKDKDGTFSKVFLFNKK 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLK 209
+ +I+ A A + ND L+
Sbjct: 179 QENEEIL--IAAKRATVINDAGILR 201
>gi|327537720|gb|EGF24427.1| hypothetical protein RBWH47_05036 [Rhodopirellula baltica WH47]
Length = 430
Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/249 (15%), Positives = 82/249 (32%), Gaps = 14/249 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY +L+T L + V + + S VLA P ++
Sbjct: 4 IDRYVLILFLRTVCVCFLSLAGIFIVFHAFTAMDDLIAQSKVGDSLPLVLAKFYGPYLLL 63
Query: 65 ---QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
ITL+ + L RT EL + + G+S ++L P ++ S+ + +
Sbjct: 64 LFDMTGTIITLMAFLFTAGWLRRTGELTATLSAGVSHGRILRPMIIASLAIISVQLANRE 123
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + L + K+ + ++P S+ I I K+ +
Sbjct: 124 WVIP---RFRDSLTMKAKNLSGDIEQAVMPTYDQSSG---ILIEGDKLRTLGRVISRPNF 177
Query: 182 ITIDKKNKIIHRKDADLAIIYN----DKVKLK-KVVEYQYGRIPIDKNSTTLNIPIKMDG 236
+ A AI ++ + + + ++++T P +DG
Sbjct: 178 RLYSEYAGFGDVLLAREAIWWDPEAMAEWRTEMGPTVPTRSDTASPQSTSTPATPSGIDG 237
Query: 237 FQKFSEQFA 245
++ A
Sbjct: 238 KRRSWTDLA 246
Score = 44.5 bits (104), Expect = 0.026, Method: Composition-based stats.
Identities = 25/195 (12%), Positives = 62/195 (31%), Gaps = 10/195 (5%)
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP-IDK 223
+ L + T + + A + + + +V + P +
Sbjct: 240 RSWTDLAGRAGMPEVTGYLLQGVRRPEQLDSVPSAGLSSR----EDLVIFTPADQPWLGP 295
Query: 224 NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
+ I + Q S E+ ++ + + T + IV +
Sbjct: 296 TECFVVTSIHPNMLQTQDTATKLASVMELAGRVRN---PAVHSSMALRTTTHERIVRAPL 352
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS-GILLPVAAALI 342
A+ L+ + + R + +++ + + + TI + G S ++ P AA I
Sbjct: 353 DFALILLVLPMVV-NRRGRKLFVLIGSAVGLIIAFFALKTIASALGGSTTMVTPGIAAWI 411
Query: 343 PVILTISLSILILLQ 357
P+++ L+
Sbjct: 412 PLLIIGPLAYSRYRH 426
>gi|29840522|ref|NP_829628.1| YjgP/YjgQ family protein [Chlamydophila caviae GPIC]
gi|29834871|gb|AAP05506.1| YjgP/YjgQ family protein [Chlamydophila caviae GPIC]
Length = 357
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 6/162 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
ILW+ YLKT + L + + + L EI + + + + L A ++P +
Sbjct: 2 PILWKVLIFRYLKTVTFCTLSLICISIISSLQEIVSYIAK--DVPYLTVLRLTAYQIPYL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I+P + +F L+ +++ +A G S + P ++ S + +
Sbjct: 60 LPFILPVSCFISAFALFRGLSDNNQITFLKASGASQGIITFPILMVSCAICCINFYTCSE 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
+A+ I N ++ IFI
Sbjct: 120 LASICRFQTCKEIA----NMAMTSPTLLLQTLQKKENNRIFI 157
>gi|332290237|ref|YP_004421089.1| putative permease YjgP/YjgQ family [Gallibacterium anatis UMN179]
gi|330433133|gb|AEC18192.1| putative permease YjgP/YjgQ family [Gallibacterium anatis UMN179]
Length = 363
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 55/311 (17%), Positives = 108/311 (34%), Gaps = 18/311 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K LK+ L L +++ L + N + L +P +
Sbjct: 2 ILTKYLIKETLKSQLAILFILLVIFLAQQLVRVLGSAVN-GNVPVDVILPLLGLGMPTMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q ++P + ++ L SE+ + +A GI L+ ++ SI+ +
Sbjct: 61 QLMLPLSLFLALLLTLGRLYSESEITVMQACGIGPNALVKVGLILSIVTAAIAAYNSLYL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
K +++++ K N S I P IS+ + + K+ + D
Sbjct: 121 TPWALKKQVEVVENAKAN--PSASAITPGQFISSNNGNFVLFVDKV--KGDQLSDIYLFQ 176
Query: 184 IDKKNKII-HRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ K+ A+ + + LK ++ + + T D
Sbjct: 177 TRQVGKVKPSVIVAEQGNFSTAKDGSQTLALKNGERFEGSAVLPEFRVTHFQ-----DYL 231
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ A ++ + S + N N +AE Q+ I + L + M LIA +S
Sbjct: 232 AFLAFNPAKAEEADLDMQDSNALLKNSSANAKAELQW--RISLFLAVPLMMLIAIPLSKV 289
Query: 298 FSRSNQPRIIV 308
R + I+
Sbjct: 290 NPRQGRFAKII 300
>gi|299530038|ref|ZP_07043465.1| permease YjgP/YjgQ [Comamonas testosteroni S44]
gi|298722018|gb|EFI62948.1| permease YjgP/YjgQ [Comamonas testosteroni S44]
Length = 369
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 51/316 (16%), Positives = 115/316 (36%), Gaps = 21/316 (6%)
Query: 20 FLLGAMILVFVIDLNEIQNQMGE--LPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIV 77
F A++L+ V+ + +G+ + S S ++ V + I+ V +
Sbjct: 15 FGATAVVLITVVMTMMLIRTLGQAYKGSVSPSDVMLVMGFTVLGQLPTILGLSLFVAIVG 74
Query: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ 137
+ R SE+VI A G + LL P + + + + T ++ + + + Q
Sbjct: 75 SLSRMYRDSEMVIWFAAGQGLASLLKPLLRFAWPVILITAVLALGVLPWSYQQIEQIKTQ 134
Query: 138 WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK-KNKIIHRKDA 196
++ D + I P + K P + + ++ D K + K A
Sbjct: 135 FQQRSDLDR--IAPGEFQESAGGTRVFFVDKDSPSDMAASNVFVVSRDPGKESVTSAKGA 192
Query: 197 DLAIIYNDK-VKLKKV--VEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFY--E 251
LA+I + V L+ +E + + + E+ A+RS +
Sbjct: 193 HLAVIKGQRMVILEDGQRMETRSDDGSVRITEFKEYGVQVDNDNPVTIEEMAARSMPTKD 252
Query: 252 IIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYG 311
+I K +S + + +P + ++ ++S R+ ++
Sbjct: 253 LIGKDEPIARSV----------LAWRLGLPFAALNFVILGLAISSVNPRAGNSSSLM-IA 301
Query: 312 IFSGFMLYTIITIMKS 327
+F+ + Y ++T+ +S
Sbjct: 302 LFAFIVYYNLMTLGES 317
>gi|157804262|ref|YP_001492811.1| hypothetical protein A1E_05575 [Rickettsia canadensis str. McKiel]
gi|157785525|gb|ABV74026.1| hypothetical protein A1E_05575 [Rickettsia canadensis str. McKiel]
Length = 360
Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 54/366 (14%), Positives = 137/366 (37%), Gaps = 27/366 (7%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
+YF K L + +V++ + ++ + + L +P ++ +
Sbjct: 6 KYFIKNILPLLIVVTFSVTSIVWITQVLKLLYLFDK--GIKVMDFFSLIVLVLPTLLFIL 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P IT++ I ++ NL +++I +A G+ QL P + ++++ + + + I
Sbjct: 64 LPVITVIAVIYIYNNLKVERQIIILQASGVHNVQLALPALYVALIVMLLAYYISSTIMPL 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ K+N S +I + +DI + K +I ++
Sbjct: 124 SHINLKSRLSFIKNN---YISSMIEEKTFNKVTKDITVFIDKKSA-GNIMNGVIIFD-NR 178
Query: 187 KNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
+ AD + + +L K + ++ I+ N T L M Q +
Sbjct: 179 NADNLSVVFADSGTLNIYDNSPIFELNKGLRQEHD---INGNLTQLTFNSLMIKLQN--D 233
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHN---------YRAETQFYFLIVIPLMLVAMTLIAAS 293
+ K+ + S + + + + I+ PL + +A +
Sbjct: 234 NPLIPQRTKHNKEANEYYISELLAPPHDLAVTKKIKLIAEAHQRIIWPLYNFVLPFLALA 293
Query: 294 VSLEFSRSNQPRII-VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
V L + S + + V + + ++ +I I+++F L + A +++ +++ +
Sbjct: 294 VFLRYPYSKKTTFMPVLFSALTVLLVTSIHFILQNFASKN-LNFIFACYSNLVIALTIGL 352
Query: 353 LILLQK 358
+ ++K
Sbjct: 353 YLFVRK 358
>gi|157826358|ref|YP_001494078.1| hypothetical protein A1C_06735 [Rickettsia akari str. Hartford]
gi|157800316|gb|ABV75570.1| hypothetical protein A1C_06735 [Rickettsia akari str. Hartford]
Length = 360
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 57/366 (15%), Positives = 142/366 (38%), Gaps = 20/366 (5%)
Query: 4 ILWR-YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L+R YF K L + +V++ + ++ + + L +P +
Sbjct: 2 LLYRKYFIKNILPLLIVVTFSLTSIVWITQILKLLYLFDK--GIKVMDFFNLIVLVLPTL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++P IT++ I ++ NL +L+I +A G++ QL P + ++++ + + +
Sbjct: 60 LFILLPVITVIAIIYIYNNLKVERQLIILQASGVNNVQLALPALYVALIVMLLAYYISST 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + K+N S +I + +DI + K +I
Sbjct: 120 IMPLSHINLKSHLNFIKNN---YISSMIEEKTFNKVTKDITVFIDKKSA-GNIMNGVIIF 175
Query: 183 TIDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD--- 235
+ A + N +L K + +Y T ++ IK+
Sbjct: 176 DNRNADNP-SVVFAGSGTLNIYDNNPIFELNKGLRQEYDVNGNLTQLTFDSLMIKLQNDN 234
Query: 236 --GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
Q+ + +Y I + ++ ++ I + + + I+ PL + +A +
Sbjct: 235 HLASQRTQHNKEANEYY-ISELLAPTHDLVITKKIKLIAEAHQRIIWPLYNFVLPFLALA 293
Query: 294 VSLEFSRSNQPRII-VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
V L + S + + V + + ++ +I I+++F L + A +++ +++ +
Sbjct: 294 VFLRYPYSKKTTFMPVLFSTLTVLLVTSIHFILQNFASKN-LDFIFACYSNLVIALTIGL 352
Query: 353 LILLQK 358
+ ++K
Sbjct: 353 YLFVRK 358
>gi|146299866|ref|YP_001194457.1| permease YjgP/YjgQ family protein [Flavobacterium johnsoniae UW101]
gi|146154284|gb|ABQ05138.1| permease YjgP/YjgQ family protein [Flavobacterium johnsoniae UW101]
Length = 486
Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/199 (16%), Positives = 67/199 (33%), Gaps = 8/199 (4%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
IL +Y K +L T + + + + +++ + + +P I
Sbjct: 2 KILDKYLLKTFLFTFTTVFVILFFIFILQTVWLFISELAGK-DLDLLLVVKFLLFSMPRI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I ++P L+ +I+ F NL E ++ GIS+ + + ++ +L I N
Sbjct: 61 IPLVLPLSVLLASIMTFGNLAENYEFAAMKSSGISLQRAMRVLIIFIFVLSIVAFWFANN 120
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS- 181
+ E ++ + Q ++ KK +I T
Sbjct: 121 VIPYAEYKFVNFRKNIAQAKPAMAIAEG---QFNDVGTYNIKVNKKSGENGNILTGVTIH 177
Query: 182 ---ITIDKKNKIIHRKDAD 197
I + +I KD +
Sbjct: 178 EKANNIGENKTVIKAKDGE 196
Score = 53.7 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 2/134 (1%)
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+ + TL + K + + + Y I+ K + T Y VI
Sbjct: 317 LPNDLLTLYTNKEKSDVLKMASSNVTSNIYS-IETTQKDLKDKQREINKHLTALYEKFVI 375
Query: 281 PLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAA 340
M I A + R + + + + + I T K + G + P +
Sbjct: 376 AFACFLMFFIGAPLGA-IIRKGGLGLPIVFAVLIFITFHFINTFGKRLSQEGGMSPFMGS 434
Query: 341 LIPVILTISLSILI 354
+ + L+IL+
Sbjct: 435 WMSSFILSPLAILL 448
>gi|289209274|ref|YP_003461340.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. K90mix]
gi|288944905|gb|ADC72604.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. K90mix]
Length = 386
Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/288 (13%), Positives = 92/288 (31%), Gaps = 23/288 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNE--IQNQMGELPN--YSISRGAVLAATRV 59
IL R + ++ L+ A+ +V ++ + + + ++ + + A
Sbjct: 17 ILRR--AERFIARELWLTQAAVSVVLLLVIIGGVLARVLRDVAEGRLPVDFLPGMVAFGA 74
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
I + P + ++VF + R SE+ +A G+S L + I +++
Sbjct: 75 FKGIVFLWPVALFLAFMLVFGRMQRDSEMTALQASGMSFAALYRALFWVAAPAAILLLVL 134
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ + E L + D +++ Q F A+++ + +
Sbjct: 135 MTMVVPRTEAQIDQLRDLAEQRSDLVGIAPGRFLRSRVGDQVFF--AERMSADREALLEV 192
Query: 180 TSIT-IDKKNKIIHRKDA--DLAIIYNDKVKLKKVVEY--QYGRIPIDK-NSTTLNIPIK 233
+D + +I + A D + + L+ Y + G L I
Sbjct: 193 FIYREVDGEAQITVAERAVPDPGAEGSGFLLLENGYRYVGEPGTASFRMLEFERLRTQIT 252
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIP 281
++ + + RAE ++ + +P
Sbjct: 253 EPDPGTRRASLNAQPTPALWAQRDD-------PEARAELEW--RLAMP 291
>gi|319900104|ref|YP_004159832.1| permease YjgP/YjgQ family protein [Bacteroides helcogenes P 36-108]
gi|319415135|gb|ADV42246.1| permease YjgP/YjgQ family protein [Bacteroides helcogenes P 36-108]
Length = 633
Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/195 (13%), Positives = 60/195 (30%), Gaps = 10/195 (5%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSISRGAVLAATRVPLIIQQIIPFIT 71
LK+ +G + I + + + EL + + ++P
Sbjct: 11 VLKSFCMLFMGTFFICLFIFMMQFLWRYVDELIGKGLEMTVLAQFFF--YSALTLVPVSL 68
Query: 72 LVVNIV----VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
+ ++ F N EL+ +A GIS+ +++ +V L+ + N I
Sbjct: 69 PLAILLAALITFGNFGERFELLAMKAAGISLLKIMRSLIVFIALVSCVSFYFQNVIGPQA 128
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ L+ K + + + + + K + + D +K
Sbjct: 129 QTKLWTLLLSMKQKSPEVDIPEGVFY---DEIEGYNLYVKHKDRKTGMLYDVLIYNFEKG 185
Query: 188 NKIIHRKDADLAIIY 202
+ AD +
Sbjct: 186 FENAQIIKADSGKLE 200
Score = 37.1 bits (85), Expect = 4.5, Method: Composition-based stats.
Identities = 20/190 (10%), Positives = 50/190 (26%), Gaps = 9/190 (4%)
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + N D D S+ + + A + + D +
Sbjct: 231 VPYRREAFREKHAIIEFNSDFNMVDAGIMSNQSSSKNMRMLQA--SIDSMTVLSDSVGRS 288
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
K+ + +A + D ++++K Y + +T + + +E
Sbjct: 289 FYKEA-MAGTYNAASGLSKEDTIRVEKARLGDYNVDSLFNIATLMQKQKIVSAAVSRAES 347
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
S S R ++ + + + I A + R
Sbjct: 348 AG-----NDWNFKSVSISQTDDSLRRHYLSWHEKLTLSFACLIFFFIGAPLG-GIIRKGG 401
Query: 304 PRIIVAYGIF 313
+ V +
Sbjct: 402 LGMPVVVSVL 411
>gi|329943109|ref|ZP_08291883.1| hypothetical protein G5Q_0788 [Chlamydophila psittaci Cal10]
gi|332287691|ref|YP_004422592.1| conserved hypothetical membrane transport protein [Chlamydophila
psittaci 6BC]
gi|313848265|emb|CBY17266.1| conserved hypothetical membrane protein [Chlamydophila psittaci
RD1]
gi|325506677|gb|ADZ18315.1| conserved hypothetical membrane transport protein [Chlamydophila
psittaci 6BC]
gi|328814656|gb|EGF84646.1| hypothetical protein G5Q_0788 [Chlamydophila psittaci Cal10]
gi|328914944|gb|AEB55777.1| YjgP/YjgQ family protein [Chlamydophila psittaci 6BC]
Length = 367
Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 62/375 (16%), Positives = 132/375 (35%), Gaps = 47/375 (12%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEI--------QNQMGELPNYSISRGAVLAATRV 59
Y +K Y+ T +F L ++I++ + I N S+ + +++
Sbjct: 2 YIWKRYVLTKFWFSLVSLIVLAFVFYASIHHSLHTIKGNTTSLASGASLKLSILYYLSQI 61
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
L + +IP + V + F++ E+++ +A G+S+ L P + S ++ +
Sbjct: 62 ALKAEFLIPQLVAVATTITLFSMQNKREVLLLQASGLSLKSLTAPLIHSSFIITLLLYAN 121
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ E+I I + DK D +P + + + + I +
Sbjct: 122 FQWLHPICEQISITKEHMDRGTLDK-VHDKVPALYLKD---QTVLLYSSIEQKTLTLNQV 177
Query: 180 -------TSITIDKKN----------KIIHRKDADLAIIY-NDKVKLKKVVEYQYG--RI 219
T T++K +I + + I ++ +K+ E ++G
Sbjct: 178 FWIKNPKTIYTMEKLAFTTPSLPIGLDVIRFSETESGSIELSEYSDMKEFPEIEFGFYDN 237
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
P K T + FQ I + S S FY++++
Sbjct: 238 PFSKIFTAGGKNRLSESFQAIPWNATGLGLSTTIPQRILSLLST----------FYYMLI 287
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
PL ++ +I+A + L FSR + + + + + S +L
Sbjct: 288 SPLACISSMIISAYLCLRFSRVPTVTLAYLVPLGTINTFFIFLKAGMVLSNSSVLPI--- 344
Query: 340 ALIPVILTISLSILI 354
+PV+L + + I
Sbjct: 345 --LPVMLFPLIILAI 357
>gi|319762860|ref|YP_004126797.1| permease yjgp/yjgq family protein [Alicycliphilus denitrificans BC]
gi|330824940|ref|YP_004388243.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans
K601]
gi|317117421|gb|ADU99909.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans BC]
gi|329310312|gb|AEB84727.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans
K601]
Length = 364
Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/350 (12%), Positives = 122/350 (34%), Gaps = 43/350 (12%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
K ++ L+ + +V + L + Q + + S ++ V + I+
Sbjct: 7 IRKELARSFGATLVVLITVVMTMMLIRVLGQASR-GSVAPSDVMLVMGFTVLGQLSTILS 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGIS-------IWQLLNPFVVGSILLGIFTVLVIN 121
V + + R SE+VI + G + + P ++ L +
Sbjct: 66 LSLFVTVVGTLSRMYRDSEMVIWFSAGRGLLSLLAPLLRFSWPIMLAIAALSLV------ 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + +L Q++ D + + + K P+ + +
Sbjct: 120 -VWPWANRQIQELKTQYEQRSDVDRVAPGQF--QESSNGSRVFFIDKDTPDANAASNVFI 176
Query: 182 ITIDKKNKIIH-----RKDA----DLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
T + + I R + LA+++N + +L+ +++ RI TL
Sbjct: 177 ATNEAHRETITSAQSARIEIRNGERLALLHNGQ-RLETMLDKPGLRISEFTEYGTL---- 231
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+D + + + + + R + + + + + + ++
Sbjct: 232 -IDSGSQSDPEAGAIKTRDTWDLARD-------PSPRHQAELGWRLGLAFAALNFVVLGL 283
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS---FGKSGILLPVAA 339
+V++ R+ + +A+ +F+ + Y ++T+ ++ G+ G++ + A
Sbjct: 284 AVAIVNPRAGRS-TSLAFALFAFMVYYNLMTVGQAWIGAGRFGLVPFMLA 332
>gi|166154182|ref|YP_001654300.1| putative membrane transport protein [Chlamydia trachomatis 434/Bu]
gi|166155057|ref|YP_001653312.1| putative membrane transport protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335427|ref|ZP_07223671.1| putative membrane transport protein [Chlamydia trachomatis L2tet1]
gi|165930170|emb|CAP03654.1| putative membrane transport protein [Chlamydia trachomatis 434/Bu]
gi|165931045|emb|CAP06608.1| putative membrane transport protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 366
Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 54/387 (13%), Positives = 125/387 (32%), Gaps = 66/387 (17%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGE--LPNYSISRGAVLAATRVPL 61
I RY + + A+I I + + G+ + + + +++ L
Sbjct: 3 IWKRYLLSRFWISLSSLFFLAVIFYASIHHSLHAFREGKTAIAGAPLQLSLLYYLSQISL 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P + + + + F++ E+++ +A G+S+ L+ P V+ S L+ +
Sbjct: 63 KAEFILPQLVAIASTITLFSMQSKREILLLQASGLSLKTLIRPLVISSSLITLLLYANFQ 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ EKI + K +K + I +D T
Sbjct: 123 WLHPICEKISVTKEHMDKGTLEKAQEKIP----------------------ALYLKDQTV 160
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ N+ A + N Y ++ S + + + +
Sbjct: 161 LIFSSINR-------RAATLNNVFWIKGPKTIYAIKKLAFTTPSLPIGLEVSYFSEDENH 213
Query: 242 EQ-----FASRSFYEIIKKMSFSNKSNIFHNYR--------------------------- 269
E F + F E+ + S IF R
Sbjct: 214 EVSLTQFFDMKEFPELEFSYYDNPFSKIFITGRDCSFSAFLQAIPWHAAKFGLLTTVPQR 273
Query: 270 ---AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
T FY++++ PL+ +A +++A + L F R + + + + + ++
Sbjct: 274 ILSLLTLFYYMLISPLLCIAAVILSAHLCLRFHRLPKITWAYLVPLGTINIFFVVLKAGM 333
Query: 327 SFGKSGILLPVAAALIPVILTISLSIL 353
+ +L + IP + +++
Sbjct: 334 VLANNSVLPALQVMFIPAGFMLLITLY 360
>gi|264678996|ref|YP_003278903.1| permease YjgP/YjgQ [Comamonas testosteroni CNB-2]
gi|262209509|gb|ACY33607.1| permease YjgP/YjgQ [Comamonas testosteroni CNB-2]
Length = 369
Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/316 (16%), Positives = 115/316 (36%), Gaps = 21/316 (6%)
Query: 20 FLLGAMILVFVIDLNEIQNQMGE--LPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIV 77
F A++L+ V+ + +G+ + S S ++ V + I+ V +
Sbjct: 15 FGATAVVLITVVMTMMLIRTLGQAYKGSVSPSDVMLVMGFTVLGQLPTILGLSLFVAIVG 74
Query: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ 137
+ R SE+VI A G + LL P + + + + T ++ + + + Q
Sbjct: 75 SLSRMYRDSEMVIWFAAGQGLASLLKPLLRFAWPVILITAVLALGVLPWSYQQIEQIKTQ 134
Query: 138 WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK-KNKIIHRKDA 196
++ D + I P + K P + + ++ D K + K A
Sbjct: 135 FQQRSDLDR--IAPGEFQESAGGTRVFFVDKDSPSDMAASNVFVVSRDPGKESVTSAKGA 192
Query: 197 DLAIIYNDK-VKLKKV--VEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFY--E 251
LA+I + V L+ +E + + + E+ A+RS +
Sbjct: 193 HLAVIKGQRMVILEDGQRMETRSDDGSVRITEFKEYGVQVDNDNPVAIEEMAARSMPTKD 252
Query: 252 IIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYG 311
+I K +S + + +P + ++ ++S R+ ++
Sbjct: 253 LIGKDEPIARSV----------LAWRLGLPFAALNFVILGLAISSVNPRAGNSSSLM-IA 301
Query: 312 IFSGFMLYTIITIMKS 327
+F+ + Y ++T+ +S
Sbjct: 302 LFAFIVYYNLMTLGES 317
>gi|160887737|ref|ZP_02068740.1| hypothetical protein BACUNI_00139 [Bacteroides uniformis ATCC 8492]
gi|317478670|ref|ZP_07937825.1| hypothetical protein HMPREF1007_00941 [Bacteroides sp. 4_1_36]
gi|156862768|gb|EDO56199.1| hypothetical protein BACUNI_00139 [Bacteroides uniformis ATCC 8492]
gi|316905181|gb|EFV26980.1| hypothetical protein HMPREF1007_00941 [Bacteroides sp. 4_1_36]
Length = 633
Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/193 (12%), Positives = 61/193 (31%), Gaps = 6/193 (3%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQ-NQMGELPNYSISR--GAVLAATRVPLIIQQIIPF 69
LK+ +G + I + + + E+ + A ++ +P
Sbjct: 11 VLKSFCMLFMGTFFICLFIFMMQFLWRYVDEMVGKGLEMTVLAQFFFYSALSLVPASLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ ++ F N EL+ +A GIS+ +++ P ++ + + N I +
Sbjct: 71 AILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIIFICFICCVSFYFQNVIGPKAQT 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
L+ K + + + + K + + D +K +
Sbjct: 131 KLWTLLISMKQKSPEVDIPEGVFYDEIDGYN---LYVKHKNRKTGMLYDVLIYNFEKGFE 187
Query: 190 IIHRKDADLAIIY 202
+D +
Sbjct: 188 NAQIIKSDSGRLE 200
Score = 37.5 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
SF+ R T ++ + + L + I A + R + V +
Sbjct: 352 WSFKSFNISQTESSLRRHMTSWHEKLTLSLACLIFFFIGAPLG-GIIRKGGLGMPVVVSV 410
Query: 313 F 313
Sbjct: 411 L 411
>gi|203284703|ref|YP_002222443.1| hypothetical protein BDU_815 [Borrelia duttonii Ly]
gi|201084146|gb|ACH93737.1| conserved hypothetical integral membrane protein [Borrelia duttonii
Ly]
Length = 429
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 52/379 (13%), Positives = 118/379 (31%), Gaps = 66/379 (17%)
Query: 46 YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF 105
+ + +P+++ PF L+ I+ + +E++ R+IGISI LL PF
Sbjct: 48 VPFFKAFIFVIYSLPMVVALSPPFAALLSVILTIYRFKLNNEILAFRSIGISISNLLTPF 107
Query: 106 VVGSI---LLGIFTVLVINPIA---------------------TSGEKIGIDLIQQWKDN 141
+ + L+ + P+ K DLI +
Sbjct: 108 LKLGVIIALVSFILNDFLLPLGSIGRLKIFNDIKEEIPHLILKPYSSKQYGDLIFVSGEK 167
Query: 142 GDKQKSDIIPWMQISNPQQDIFIGAKKILPEN------HIWEDFTSITIDKKNK-IIHRK 194
+ ++ + D AK++ + I + SI + + K
Sbjct: 168 SETGYKNVTFFDNTRLKGYDRIFMAKELNIQKENHQVYFILNNVLSIALTEDEKGFYDYF 227
Query: 195 DADLAIIYNDKVKLKKVVEYQYGRIP-----------IDKNSTTLNIPIK---------- 233
AD D+V Y + ++ + K
Sbjct: 228 YADRMKYSIDQVTFSDGWVLTYVPPSQMSMRDVFKLVVRQSKLVEELNTKNYLEEDLLNM 287
Query: 234 ------MDGFQKFSEQFASRSFYEIIKKM-----SFSNKSNIFHNYRA---ETQFYFLIV 279
++ + F S E + + +++ ++ N +FY I
Sbjct: 288 NFANIYLNYLYDKNNIFDENSIIENLNYVYNLSVNYAPYEDLIANRSYAFFYLEFYQKIS 347
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
+PL ++ +A + + ++ + + I + + K + P+
Sbjct: 348 LPLSVLFFIFLAFGMGMYSNKKYSIILELVISILICVFYWAMFMGGKVYTVQHAPNPILV 407
Query: 340 ALIPVILTISLSILILLQK 358
++P IL + +++ L+
Sbjct: 408 IILPNILLMVAGLILFLRL 426
>gi|332754457|gb|EGJ84823.1| hypothetical protein SF274771_3587 [Shigella flexneri 2747-71]
Length = 356
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|57242354|ref|ZP_00370293.1| conserved hypothetical integral membrane protein, putative
[Campylobacter upsaliensis RM3195]
gi|57017034|gb|EAL53816.1| conserved hypothetical integral membrane protein, putative
[Campylobacter upsaliensis RM3195]
Length = 351
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 55/365 (15%), Positives = 124/365 (33%), Gaps = 41/365 (11%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ ++++Y +L T L L +V ++ +I N + S L +P
Sbjct: 10 ILKLIFKYILNQFLGTHLSIFLVLFGIVSMVFFIQIANLTSSI-EISFLDLFKLYGFMLP 68
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I+ +P V + + L++ +E V+ +G + ++ F+ + L + + V
Sbjct: 69 RILIFTLPLAFFVALTLALYRLSKENESVVFFTLGFTPLKMAQFFLKIATFLSVLMLGVA 128
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ + + K + + IFI +K +E+
Sbjct: 129 LVMIPIVYQLQKNFVDYKKTQ--IKFNYKTGEFGQKFLDWMIFIQDEK----EGGYENII 182
Query: 181 SITIDKKNKIIHR-KDADLAIIYND----KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + + A A + +L + Y + + + +
Sbjct: 183 MYHPKSTDNLKEQLIIAKEANLERSNEGFAFRLNEGKMYNFDGG----EALFIGEFENLV 238
Query: 236 GFQKFSEQFA-SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
KFS+ +++FYE ++ + E Y I L +A TL A S
Sbjct: 239 VNTKFSDNLGQTKAFYEYWDDINTNADKAR------EFVMYVCIS--LFPLASTLFALSF 290
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS-FGKSGIL--LPVAAALIPVILTISLS 351
+ R + GF+ + ++ FG L P+ + + I + + +
Sbjct: 291 GIVTYRYEK-----------GFIYLGMFGVIAVYFGLLSSLYKPPLLMSFL--IFSFAFA 337
Query: 352 ILILL 356
I+
Sbjct: 338 ASIIC 342
>gi|188494208|ref|ZP_03001478.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
gi|188489407|gb|EDU64510.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
Length = 356
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/186 (15%), Positives = 64/186 (34%), Gaps = 4/186 (2%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + + + ++G +I +F ++ ++ + +V + ++ ++
Sbjct: 7 YIMRG-TRRLVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIALEMLL 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P V V + SE+ A G S +L + +I L IF L+
Sbjct: 66 PVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWA 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
L QQ + D ++ + + + I ++ + +N+ D T
Sbjct: 126 YAQIYQLEQQSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTAN 182
Query: 188 NKIIHR 193
I R
Sbjct: 183 RTRIFR 188
>gi|215488306|ref|YP_002330737.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
gi|215266378|emb|CAS10815.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
Length = 356
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + Q + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKQFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|26249548|ref|NP_755588.1| hypothetical protein c3717 [Escherichia coli CFT073]
gi|170018761|ref|YP_001723715.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
gi|254162934|ref|YP_003046042.1| hypothetical protein ECB_02856 [Escherichia coli B str. REL606]
gi|300916913|ref|ZP_07133616.1| conserved hypothetical protein [Escherichia coli MS 115-1]
gi|300923637|ref|ZP_07139665.1| hypothetical protein HMPREF9548_01830 [Escherichia coli MS 182-1]
gi|300950816|ref|ZP_07164702.1| conserved hypothetical protein [Escherichia coli MS 116-1]
gi|300958361|ref|ZP_07170502.1| hypothetical protein HMPREF9547_04075 [Escherichia coli MS 175-1]
gi|301643654|ref|ZP_07243695.1| conserved hypothetical protein [Escherichia coli MS 146-1]
gi|307139670|ref|ZP_07499026.1| hypothetical protein EcolH7_16283 [Escherichia coli H736]
gi|312972759|ref|ZP_07786932.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|331643681|ref|ZP_08344812.1| putative permease [Escherichia coli H736]
gi|26109956|gb|AAN82161.1|AE016766_249 Hypothetical protein c3717 [Escherichia coli CFT073]
gi|169753689|gb|ACA76388.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
gi|242378536|emb|CAQ33322.1| ybl136 [Escherichia coli BL21(DE3)]
gi|253974835|gb|ACT40506.1| conserved hypothetical protein [Escherichia coli B str. REL606]
gi|253978990|gb|ACT44660.1| conserved hypothetical protein [Escherichia coli BL21(DE3)]
gi|284923007|emb|CBG36099.1| putative permease [Escherichia coli 042]
gi|300314945|gb|EFJ64729.1| hypothetical protein HMPREF9547_04075 [Escherichia coli MS 175-1]
gi|300415883|gb|EFJ99193.1| conserved hypothetical protein [Escherichia coli MS 115-1]
gi|300420078|gb|EFK03389.1| hypothetical protein HMPREF9548_01830 [Escherichia coli MS 182-1]
gi|300449911|gb|EFK13531.1| conserved hypothetical protein [Escherichia coli MS 116-1]
gi|301078038|gb|EFK92844.1| conserved hypothetical protein [Escherichia coli MS 146-1]
gi|309703416|emb|CBJ02755.1| putative permease [Escherichia coli ETEC H10407]
gi|310332701|gb|EFP99914.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|323936015|gb|EGB32310.1| permease YjgP/YjgQ family protein [Escherichia coli E1520]
gi|323941918|gb|EGB38097.1| permease YjgP/YjgQ family protein [Escherichia coli E482]
gi|331037152|gb|EGI09376.1| putative permease [Escherichia coli H736]
gi|332344939|gb|AEE58273.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 356
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|193062108|ref|ZP_03043204.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
gi|192932328|gb|EDV84926.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
Length = 356
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|331648771|ref|ZP_08349859.1| putative permease [Escherichia coli M605]
gi|330909041|gb|EGH37555.1| permease Ygh-P1, YjgP/YjgQ family [Escherichia coli AA86]
gi|331042518|gb|EGI14660.1| putative permease [Escherichia coli M605]
Length = 356
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|293412358|ref|ZP_06655081.1| conserved hypothetical protein [Escherichia coli B354]
gi|291469129|gb|EFF11620.1| conserved hypothetical protein [Escherichia coli B354]
Length = 356
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|295689676|ref|YP_003593369.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
gi|295431579|gb|ADG10751.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
Length = 380
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 66/172 (38%), Gaps = 4/172 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
++ RY F+ L TL + L + + + E S + +P ++
Sbjct: 3 LIERYLFRQLLGPTLLATAALVALALLARSLSEFDVLVE-QRQSAVVFLKIILLALPQLL 61
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P V +V L+ E+V+ A G+S W +++P + +++ + +++ +
Sbjct: 62 AIMMPLALFVAALVALNRLHTEQEIVVCFAGGMSRWAVISPAMRLAVMAALISLISGLWL 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
+ + K + Q + P + + A+ I +N I
Sbjct: 122 QPWSARQIRETAFDIKTDVASTLVQPG---QFTEPGPGLTVYAQSINRDNKI 170
>gi|255349243|ref|ZP_05381250.1| putative membrane transport protein [Chlamydia trachomatis 70]
gi|255503780|ref|ZP_05382170.1| putative membrane transport protein [Chlamydia trachomatis 70s]
gi|255507461|ref|ZP_05383100.1| putative membrane transport protein [Chlamydia trachomatis
D(s)2923]
gi|289525884|emb|CBJ15366.1| putative membrane transport protein [Chlamydia trachomatis Sweden2]
gi|296435470|gb|ADH17648.1| putative membrane transport protein [Chlamydia trachomatis E/150]
gi|296439187|gb|ADH21340.1| putative membrane transport protein [Chlamydia trachomatis E/11023]
Length = 366
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 54/387 (13%), Positives = 124/387 (32%), Gaps = 66/387 (17%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVI--DLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I RY + + A+I I L+ + + + + +++ L
Sbjct: 3 IWKRYLLSRFWISLSSLFFLAVIFYASIHHSLHAFREGKTAIAGAPLQLSLLYYLSQISL 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P + + + + F++ E+++ +A G+S+ L+ P V+ S L+ +
Sbjct: 63 KAEFILPQLVAIASTITLFSMQSKREILLLQASGLSLKTLICPLVISSSLITLLLYANFQ 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ EKI + K +K + I +D T
Sbjct: 123 WLHPICEKISVTKEHMDKGTLEKAQEKIP----------------------ALYLKDQTV 160
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ N+ A + N Y ++ S + + + +
Sbjct: 161 LIFSSINR-------RAATLNNVFWIKGPKTIYAIKKLAFTTPSLPIGLEVSYFSEDENH 213
Query: 242 EQ-----FASRSFYEIIKKMSFSNKSNIFHNYR--------------------------- 269
E F + F E+ + S IF R
Sbjct: 214 EVSLTQFFDMKEFPELEFSYYDNPFSKIFITGRDCSFSAFLQAIPWHAAKFGLLTTVPQR 273
Query: 270 ---AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
T FY++++ PL+ +A +++A + L F R + + + + + ++
Sbjct: 274 ILSLLTLFYYMLISPLLCIAAVILSAHLCLRFHRLPKITWAYLVPLGTINIFFVVLKAGM 333
Query: 327 SFGKSGILLPVAAALIPVILTISLSIL 353
+ +L + IP + +++
Sbjct: 334 VLANNSVLPALQVMFIPAGFMLLITLY 360
>gi|293416425|ref|ZP_06659064.1| permease YjgP/YjgQ family protein [Escherichia coli B185]
gi|291431781|gb|EFF04764.1| permease YjgP/YjgQ family protein [Escherichia coli B185]
Length = 356
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|110643219|ref|YP_670949.1| putative permease [Escherichia coli 536]
gi|170683865|ref|YP_001745245.1| YjgP/YjgQ permease [Escherichia coli SMS-3-5]
gi|194436786|ref|ZP_03068886.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
gi|218706607|ref|YP_002414126.1| hypothetical protein ECUMN_3464 [Escherichia coli UMN026]
gi|256024434|ref|ZP_05438299.1| hypothetical protein E4_13749 [Escherichia sp. 4_1_40B]
gi|293406597|ref|ZP_06650523.1| conserved hypothetical protein [Escherichia coli FVEC1412]
gi|298382336|ref|ZP_06991933.1| conserved hypothetical protein [Escherichia coli FVEC1302]
gi|300900317|ref|ZP_07118496.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|312968688|ref|ZP_07782897.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|331684626|ref|ZP_08385218.1| putative permease [Escherichia coli H299]
gi|110344811|gb|ABG71048.1| putative permease [Escherichia coli 536]
gi|170521583|gb|ACB19761.1| putative permease, YjgP/YjgQ family [Escherichia coli SMS-3-5]
gi|194424268|gb|EDX40255.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
gi|218433704|emb|CAR14621.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli UMN026]
gi|291426603|gb|EFE99635.1| conserved hypothetical protein [Escherichia coli FVEC1412]
gi|298277476|gb|EFI18992.1| conserved hypothetical protein [Escherichia coli FVEC1302]
gi|300356207|gb|EFJ72077.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|312286906|gb|EFR14817.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|331078241|gb|EGI49447.1| putative permease [Escherichia coli H299]
Length = 356
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|291284363|ref|YP_003501181.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O55:H7 str. CB9615]
gi|301017325|ref|ZP_07182089.1| conserved hypothetical protein [Escherichia coli MS 69-1]
gi|331654591|ref|ZP_08355591.1| putative permease [Escherichia coli M718]
gi|331664594|ref|ZP_08365500.1| putative permease [Escherichia coli TA143]
gi|290764236|gb|ADD58197.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O55:H7 str. CB9615]
gi|300400298|gb|EFJ83836.1| conserved hypothetical protein [Escherichia coli MS 69-1]
gi|320656364|gb|EFX24271.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320661735|gb|EFX29143.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O55:H7 str. USDA 5905]
gi|320666886|gb|EFX33862.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
O157:H7 str. LSU-61]
gi|331047973|gb|EGI20050.1| putative permease [Escherichia coli M718]
gi|331058525|gb|EGI30506.1| putative permease [Escherichia coli TA143]
Length = 356
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|224536882|ref|ZP_03677421.1| hypothetical protein BACCELL_01758 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521506|gb|EEF90611.1| hypothetical protein BACCELL_01758 [Bacteroides cellulosilyticus
DSM 14838]
Length = 632
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 65/193 (33%), Gaps = 6/193 (3%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQ-MGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
LK+ +G + I + + + + E+ + S A ++ +P
Sbjct: 11 ILKSFCTLFMGTFFICLFIFMMQFLWKYVDEMVGKGLEMSVLAQFFFYSALTLVPASLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ ++ F N EL+ +A GIS+ +++ P +V IL+ + N I +
Sbjct: 71 AILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIVFIILICGVSFYFQNVIGPKAQT 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
L+ K + + + + K + + D +K +
Sbjct: 131 KLWTLLISMKQKSPELDIPEGVFYDEIDGYN---LYVKHKNRKTGMLYDVLIYNFEKGFE 187
Query: 190 IIHRKDADLAIIY 202
+D +
Sbjct: 188 NAQIIKSDSGRLE 200
Score = 36.4 bits (83), Expect = 7.7, Method: Composition-based stats.
Identities = 26/193 (13%), Positives = 53/193 (27%), Gaps = 15/193 (7%)
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + N D D SN + + A I + +
Sbjct: 231 VPYRREAFREKHAIIEFNSDFNMVDAGIMSNQSNSKDMAMLQAG-IDSMRVQNDSVGRVY 289
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-DKNSTTLNIPIKMDGFQKFSE 242
+ ++ AD LKK + + + + N +L + QK
Sbjct: 290 FKEAMNGTYKISAD----------LKKADTLKIEQAHLGEYNVDSLFNVATLSQKQKIIS 339
Query: 243 QFASR--SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+R S S+S R T ++ + + + + I A + R
Sbjct: 340 TAVNRAESAGSDWSVKSYSMSQTDTSLRRHMTSWHEKLTLSVACLIFFFIGAPLG-GIIR 398
Query: 301 SNQPRIIVAYGIF 313
+ V +
Sbjct: 399 KGGLGMPVVVSVL 411
>gi|300824070|ref|ZP_07104191.1| conserved hypothetical protein [Escherichia coli MS 119-7]
gi|331669797|ref|ZP_08370642.1| putative permease [Escherichia coli TA271]
gi|331679054|ref|ZP_08379726.1| putative permease [Escherichia coli H591]
gi|300523460|gb|EFK44529.1| conserved hypothetical protein [Escherichia coli MS 119-7]
gi|324119792|gb|EGC13672.1| permease YjgP/YjgQ family protein [Escherichia coli E1167]
gi|331062710|gb|EGI34624.1| putative permease [Escherichia coli TA271]
gi|331073119|gb|EGI44442.1| putative permease [Escherichia coli H591]
Length = 356
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|24114288|ref|NP_708798.1| hypothetical protein SF3027 [Shigella flexneri 2a str. 301]
gi|30064335|ref|NP_838506.1| hypothetical protein S3228 [Shigella flexneri 2a str. 2457T]
gi|24053444|gb|AAN44505.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30042592|gb|AAP18316.1| hypothetical protein S3228 [Shigella flexneri 2a str. 2457T]
gi|281602371|gb|ADA75355.1| putative permease [Shigella flexneri 2002017]
gi|313648098|gb|EFS12544.1| hypothetical protein SF2457T_3698 [Shigella flexneri 2a str. 2457T]
gi|332752656|gb|EGJ83041.1| hypothetical protein SFK671_3614 [Shigella flexneri K-671]
gi|332753042|gb|EGJ83426.1| hypothetical protein SF434370_3221 [Shigella flexneri 4343-70]
gi|332765462|gb|EGJ95680.1| hypothetical protein SF293071_3544 [Shigella flexneri 2930-71]
gi|332999939|gb|EGK19522.1| hypothetical protein SFK218_4003 [Shigella flexneri K-218]
gi|333014895|gb|EGK34240.1| hypothetical protein SFK304_3820 [Shigella flexneri K-304]
Length = 356
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|157162460|ref|YP_001459778.1| YjgP/YjgQ permease [Escherichia coli HS]
gi|157068140|gb|ABV07395.1| putative permease, YjgP/YjgQ family [Escherichia coli HS]
Length = 356
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/186 (15%), Positives = 64/186 (34%), Gaps = 4/186 (2%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + + + ++G +I +F ++ ++ + +V + ++ ++
Sbjct: 7 YIMRG-TRRLVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIALEMLL 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P V V + SE+ A G S +L + +I L IF L+
Sbjct: 66 PVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWA 125
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
L QQ + D ++ + + + I ++ + +N+ D T
Sbjct: 126 YAQIYQLEQQSQSELDVRQ---LRAKKFNTKDNGRMILSQTVDQDNNRLTDALIYTSTAN 182
Query: 188 NKIIHR 193
I R
Sbjct: 183 RTRIFR 188
>gi|331674536|ref|ZP_08375296.1| putative permease [Escherichia coli TA280]
gi|331068630|gb|EGI40025.1| putative permease [Escherichia coli TA280]
Length = 356
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|212710411|ref|ZP_03318539.1| hypothetical protein PROVALCAL_01472 [Providencia alcalifaciens DSM
30120]
gi|212686831|gb|EEB46359.1| hypothetical protein PROVALCAL_01472 [Providencia alcalifaciens DSM
30120]
Length = 365
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/361 (12%), Positives = 121/361 (33%), Gaps = 27/361 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATRVPL 61
I+ RY + LK+ L L +++ F +I G +P+ + L +
Sbjct: 2 IIIRYLVRETLKSQLAILFVLLLIFFSQKSIDILGAAVQGNIPSNLVLPLLGLGVPEMAQ 61
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+I + + ++ + L SE+ + A G+ L+ +V + L + V I
Sbjct: 62 LILPLS---LFLGLLMTYSKLYTESEITVMHACGLGKSVLVKAALVLAALTALVAVANIT 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++ K N + + + ++ +
Sbjct: 119 WMLPWSSQYQEQVLADAKANPGLAAMVEGQFKT--TKDGNFVLYIGEVKGNDFKNVFLAQ 176
Query: 182 ITIDKKNKIIHRKDADLAIIYNDK-----VKLKKVVEYQYGRIPID---KNSTTLNIPIK 233
+ + + AD + D+ V L + Y+ + D + +
Sbjct: 177 LRTANEQRPSVVV-ADSGYMKEDEYGRQMVVLDQGTRYEGTAMLRDFRITDFVNYQAVVD 235
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
+++ ++ ++ + N +F++ + I +V M L+
Sbjct: 236 HKATDVSTDKVEQKTMMQLWNE----------DNPEVNAEFHWRLTIVFSVVVMALMVVP 285
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
+S R + ++ + + + + + +++ G + P A + + L+++
Sbjct: 286 LSEVNPRQGRVLSMI-PAMLLYLIFFLLQSTLRNSADKGDIDPKYAMWAVNLGYLLLAVI 344
Query: 354 I 354
+
Sbjct: 345 L 345
>gi|15605573|ref|NP_220359.1| hypothetical protein CT838 [Chlamydia trachomatis D/UW-3/CX]
gi|76789583|ref|YP_328669.1| hypothetical protein CTA_0914 [Chlamydia trachomatis A/HAR-13]
gi|237803270|ref|YP_002888464.1| putative membrane transport protein [Chlamydia trachomatis
B/Jali20/OT]
gi|255311679|ref|ZP_05354249.1| putative membrane transport protein [Chlamydia trachomatis 6276]
gi|255317980|ref|ZP_05359226.1| putative membrane transport protein [Chlamydia trachomatis 6276s]
gi|3329309|gb|AAC68435.1| hypothetical protein CT_838 [Chlamydia trachomatis D/UW-3/CX]
gi|76168113|gb|AAX51121.1| hypothetical protein CTA_0914 [Chlamydia trachomatis A/HAR-13]
gi|231274504|emb|CAX11300.1| putative membrane transport protein [Chlamydia trachomatis
B/Jali20/OT]
gi|296436394|gb|ADH18568.1| putative membrane transport protein [Chlamydia trachomatis G/9768]
gi|296437325|gb|ADH19495.1| putative membrane transport protein [Chlamydia trachomatis G/11222]
gi|296438253|gb|ADH20414.1| putative membrane transport protein [Chlamydia trachomatis G/11074]
gi|297140754|gb|ADH97512.1| putative membrane transport protein [Chlamydia trachomatis G/9301]
gi|297748966|gb|ADI51512.1| Hypothetical protein CTDEC_0838 [Chlamydia trachomatis D-EC]
gi|297749846|gb|ADI52524.1| Hypothetical protein CTDLC_0838 [Chlamydia trachomatis D-LC]
Length = 366
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 54/387 (13%), Positives = 125/387 (32%), Gaps = 66/387 (17%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGE--LPNYSISRGAVLAATRVPL 61
I RY + + A+I I + + G+ + + + +++ L
Sbjct: 3 IWKRYLLSRFWISLSSLFFLAVIFYASIHHSLHAFREGKTAISRAPLQLSLLYYLSQISL 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P + + + + F++ E+++ +A G+S+ L+ P V+ S L+ +
Sbjct: 63 KAEFILPQLVAIASTITLFSMQSKREILLLQASGLSLKTLIRPLVISSSLITLLLYANFQ 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ EKI + K +K + I +D T
Sbjct: 123 WLHPICEKISVTKEHMDKGTLEKAQEKIP----------------------ALYLKDQTV 160
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ N+ A + N Y ++ S + + + +
Sbjct: 161 LIFSSINR-------RAATLNNVFWIKGPKTIYAIKKLAFTTPSLPIGLEVSYFSEDENH 213
Query: 242 EQ-----FASRSFYEIIKKMSFSNKSNIFHNYR--------------------------- 269
E F + F E+ + S IF R
Sbjct: 214 EVSLTQFFDMKEFPELEFSYYDNPFSKIFITGRDCSFSAFLQAIPWHAAKFGLLTTVPQR 273
Query: 270 ---AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
T FY++++ PL+ +A +++A + L F R + + + + + ++
Sbjct: 274 ILSLLTLFYYMLISPLLCIAAVILSAHLCLRFHRLPKITWAYLVPLGTINIFFVVLKAGM 333
Query: 327 SFGKSGILLPVAAALIPVILTISLSIL 353
+ +L + IP + +++
Sbjct: 334 VLANNSVLPALQVMFIPAGFMLLITLY 360
>gi|193067274|ref|ZP_03048242.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
gi|209920456|ref|YP_002294540.1| hypothetical protein ECSE_3265 [Escherichia coli SE11]
gi|218555554|ref|YP_002388467.1| hypothetical protein ECIAI1_3129 [Escherichia coli IAI1]
gi|218696689|ref|YP_002404356.1| hypothetical protein EC55989_3396 [Escherichia coli 55989]
gi|260857120|ref|YP_003231011.1| hypothetical protein ECO26_4088 [Escherichia coli O26:H11 str.
11368]
gi|260869742|ref|YP_003236144.1| hypothetical protein ECO111_3809 [Escherichia coli O111:H- str.
11128]
gi|293449328|ref|ZP_06663749.1| hypothetical protein ECCG_02359 [Escherichia coli B088]
gi|300815538|ref|ZP_07095762.1| conserved hypothetical protein [Escherichia coli MS 107-1]
gi|192959231|gb|EDV89666.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
gi|209913715|dbj|BAG78789.1| conserved hypothetical protein [Escherichia coli SE11]
gi|218353421|emb|CAU99487.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli 55989]
gi|218362322|emb|CAQ99944.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli IAI1]
gi|257755769|dbj|BAI27271.1| conserved predicted membrane protein [Escherichia coli O26:H11 str.
11368]
gi|257766098|dbj|BAI37593.1| conserved predicted membrane protein [Escherichia coli O111:H- str.
11128]
gi|291322418|gb|EFE61847.1| hypothetical protein ECCG_02359 [Escherichia coli B088]
gi|300531467|gb|EFK52529.1| conserved hypothetical protein [Escherichia coli MS 107-1]
gi|320201894|gb|EFW76469.1| Permease Ygh-P1, YjgP/YjgQ family [Escherichia coli EC4100B]
gi|323173775|gb|EFZ59404.1| hypothetical protein ECLT68_2093 [Escherichia coli LT-68]
gi|323178689|gb|EFZ64265.1| hypothetical protein ECOK1180_2421 [Escherichia coli 1180]
gi|323183569|gb|EFZ68966.1| hypothetical protein ECOK1357_3349 [Escherichia coli 1357]
gi|323946693|gb|EGB42714.1| YjgP/YjgQ permease [Escherichia coli H120]
gi|324018177|gb|EGB87396.1| hypothetical protein HMPREF9542_03232 [Escherichia coli MS 117-3]
Length = 356
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYTQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|157156628|ref|YP_001464444.1| YjgP/YjgQ permease [Escherichia coli E24377A]
gi|256019096|ref|ZP_05432961.1| hypothetical protein ShiD9_09279 [Shigella sp. D9]
gi|332280199|ref|ZP_08392612.1| YjgP/YjgQ permease [Shigella sp. D9]
gi|157078658|gb|ABV18366.1| putative permease, YjgP/YjgQ family [Escherichia coli E24377A]
gi|332102551|gb|EGJ05897.1| YjgP/YjgQ permease [Shigella sp. D9]
Length = 356
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYTQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|15605868|ref|NP_213245.1| hypothetical protein aq_359 [Aquifex aeolicus VF5]
gi|14916753|sp|O66685|Y359_AQUAE RecName: Full=Uncharacterized protein aq_359
gi|2983036|gb|AAC06646.1| putative protein [Aquifex aeolicus VF5]
Length = 356
Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/265 (15%), Positives = 96/265 (36%), Gaps = 9/265 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L RY +L L +++LV + L + +PL
Sbjct: 2 LLDRYLLSRFLGIFLNVSFVSVLLVSLYALLDFL---VGFKEKRTDVALSYFLNILPLGF 58
Query: 64 QQIIPFITLVVNIVVFFN--LNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I FITL +++++F + EL + ++ GIS + P ++ S+ L +L
Sbjct: 59 YYIS-FITLSISLILFLRKVFEKKMELTV-QSFGISPLRFSLPVLLFSVFLSSTFLLGNE 116
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + +K + + W + + + + +F +
Sbjct: 117 YAFPKLLGNLWFIEKNYKKKQEVKGFIKNFWFIKKENEVKTYYHVGNLNLSDGSLFNFYT 176
Query: 182 ITIDKKN-KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQK 239
+ +++KN + + + ++ ++ Y + + +K + T + + + +
Sbjct: 177 MKVERKNLNPLEVLKVFSGVWKDKEIFIRSGEIYDFEKGKREKVFNKTFKLGLSIKEVEL 236
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNI 264
FSE+ S EI M S K +
Sbjct: 237 FSEKIDFLSLSEIFFLMQKSKKVGL 261
>gi|332998925|gb|EGK18516.1| hypothetical protein SFVA6_3890 [Shigella flexneri VA-6]
Length = 356
Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|94500485|ref|ZP_01307016.1| predicted Permease [Oceanobacter sp. RED65]
gi|94427275|gb|EAT12254.1| predicted Permease [Oceanobacter sp. RED65]
Length = 340
Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/313 (11%), Positives = 107/313 (34%), Gaps = 25/313 (7%)
Query: 51 GAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL----LNPFV 106
P +Q I+P + ++V+ ++ +E+ + A G Q+ + P
Sbjct: 18 VFYTILYNSPGFLQLILPLGFYISILLVYGRMHSENEMTVLYATGFGPKQVFRITMAPVT 77
Query: 107 VGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGA 166
V +L+G + L + P A + QQ + + A
Sbjct: 78 VMMLLIGFLS-LYLAPTAADKLDRYLQEQQQESEFSFVTPGR----FNALGKGGEKVSYA 132
Query: 167 KKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYND----KVKLKKVVEYQYGRIPID 222
+ + + + ++ ++ + + ++L + +P D
Sbjct: 133 EDLSADRKQMQQV----FMADGNVLLLAESGQQFVDPNSGSRYLELNNGKRFS--GVPGD 186
Query: 223 KNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
N ++ + S+ A ++ YE + M ++ + + + ++ I + +
Sbjct: 187 PNFEAMSFDRYAVKIAEESD-VAKKARYEAVSTMELLDREHRV----YKARLHYRIGLFI 241
Query: 283 MLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
++ + ++A +S R + + + + YT + + + + G
Sbjct: 242 LVPIIVIMAFPLSHVKPRQGRYGKM-LPAVVLYMVYYTTLITARKWMEQGDTPEWLGLWW 300
Query: 343 PVILTISLSILIL 355
+ +S+ ++++
Sbjct: 301 LHGIFLSIGLMLM 313
>gi|300931864|ref|ZP_07147161.1| conserved hypothetical protein [Escherichia coli MS 187-1]
gi|300460287|gb|EFK23780.1| conserved hypothetical protein [Escherichia coli MS 187-1]
Length = 353
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|47155054|emb|CAE85253.1| putative permease [Escherichia coli]
Length = 227
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|300905893|ref|ZP_07123626.1| hypothetical protein HMPREF9536_03885 [Escherichia coli MS 84-1]
gi|301304161|ref|ZP_07210277.1| hypothetical protein HMPREF9347_02761 [Escherichia coli MS 124-1]
gi|307310385|ref|ZP_07590033.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|300402362|gb|EFJ85900.1| hypothetical protein HMPREF9536_03885 [Escherichia coli MS 84-1]
gi|300840574|gb|EFK68334.1| hypothetical protein HMPREF9347_02761 [Escherichia coli MS 124-1]
gi|306909280|gb|EFN39775.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|315062299|gb|ADT76626.1| permease YjgP/YjgQ family protein [Escherichia coli W]
gi|315256879|gb|EFU36847.1| putative permease [Escherichia coli MS 85-1]
gi|323377116|gb|ADX49384.1| permease YjgP/YjgQ family protein [Escherichia coli KO11]
Length = 356
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|237805191|ref|YP_002889345.1| putative membrane transport protein [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231273491|emb|CAX10407.1| putative membrane transport protein [Chlamydia trachomatis
B/TZ1A828/OT]
Length = 366
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 54/387 (13%), Positives = 125/387 (32%), Gaps = 66/387 (17%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGE--LPNYSISRGAVLAATRVPL 61
I RY + + A+I I + + G+ + + + +++ L
Sbjct: 3 IWKRYLLSRFWISLSSLFFLAVIFYASIHHSLHAFREGKTAISRAPLQLSLLYYLSQISL 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P + + + + F++ E+++ +A G+S+ L+ P V+ S L+ +
Sbjct: 63 KAEFILPQLVAIASTITLFSMQSKREILLLQASGLSLKTLIRPLVISSSLITLLLYANFQ 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ EKI + K +K + I +D T
Sbjct: 123 WLHPICEKISVTKEHMDKGTLEKAQEKIP----------------------ALYLKDQTV 160
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ N+ A + N Y ++ S + + + +
Sbjct: 161 LIFSSINR-------RAATLNNVFWIKGPKTIYAIKKLAFTTPSLPIGLEVSYFSEDENH 213
Query: 242 EQ-----FASRSFYEIIKKMSFSNKSNIFHNYR--------------------------- 269
E F + F E+ + S IF R
Sbjct: 214 EVSLTQFFDMKEFPELEFSYYDNPFSKIFITGRDCSFSAFLQAIPWHAAKFGLLTTVPQR 273
Query: 270 ---AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
T FY++++ PL+ +A +++A + L F R + + + + + ++
Sbjct: 274 ILSLLTLFYYMLISPLLCIAAVILSAHLCLRFHRLPKITWAYLVPLGTINIFFVVLKAGM 333
Query: 327 SFGKSGILLPVAAALIPVILTISLSIL 353
+ +L + IP + +++
Sbjct: 334 VLANNSVLPALQVMFIPTGFMLLITLY 360
>gi|189464158|ref|ZP_03012943.1| hypothetical protein BACINT_00494 [Bacteroides intestinalis DSM
17393]
gi|189437948|gb|EDV06933.1| hypothetical protein BACINT_00494 [Bacteroides intestinalis DSM
17393]
Length = 632
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/193 (14%), Positives = 64/193 (33%), Gaps = 6/193 (3%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQ-MGELPNYSI--SRGAVLAATRVPLIIQQIIPF 69
LK+ +G + I + + + + E+ + S A ++ +P
Sbjct: 11 ILKSFCTLFMGTFFICLFIFMMQFLWKYVDEMVGKGLEMSVLAQFFFYSALTLVPASLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ ++ F N EL+ +A GIS+ +++ P +V I + + N I +
Sbjct: 71 AILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIVFIIFICGVSFYFQNVIGPKAQT 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
L+ K + + + + K + + D +K +
Sbjct: 131 KLWTLLISMKQKSPELDIPEGVFYDEIDGYN---LYVKHKNRKTGMLYDVLIYNFEKGFE 187
Query: 190 IIHRKDADLAIIY 202
+D +
Sbjct: 188 NAQIIKSDSGRLE 200
Score = 36.8 bits (84), Expect = 5.5, Method: Composition-based stats.
Identities = 31/234 (13%), Positives = 61/234 (26%), Gaps = 15/234 (6%)
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + + N D D SN + + A I +
Sbjct: 231 VPYRREAFREKHAIIEFNSDFNMVDAGIMSSQSNSKDMAMLQAG-IDSMTVQNDSVGRAY 289
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPI-DKNSTTLNIPIKMDGFQKFSE 242
+ ++ AD LKK + + + + N +L + QK
Sbjct: 290 FKEAMNGTYKITAD----------LKKADTLKIEQAHLGEYNVDSLFNVATLSQKQKIIS 339
Query: 243 QFASR--SFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
SR S SF+ R T ++ + + + + I A + R
Sbjct: 340 TAVSRAESAGSDWSFKSFNITQTDTSLRRHMTSWHEKLTLSVACLIFFFIGAPLG-GIIR 398
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ V + + Y I + G + + L +
Sbjct: 399 KGGLGMPVVVSVLIFIIYYIINNTGYKMARDGQWIVWMGMWTSTAILAPLGAFL 452
>gi|194426331|ref|ZP_03058886.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
gi|194415639|gb|EDX31906.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
gi|195183223|dbj|BAG66768.1| putative permease [Escherichia coli O111:H-]
Length = 356
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I + + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILLQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|260845740|ref|YP_003223518.1| hypothetical protein ECO103_3664 [Escherichia coli O103:H2 str.
12009]
gi|257760887|dbj|BAI32384.1| conserved predicted membrane protein [Escherichia coli O103:H2 str.
12009]
Length = 356
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALYVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|74316599|ref|YP_314339.1| hypothetical protein Tbd_0581 [Thiobacillus denitrificans ATCC
25259]
gi|74056094|gb|AAZ96534.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 359
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/356 (12%), Positives = 124/356 (34%), Gaps = 24/356 (6%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATRVPLIIQ 64
R + T L + + VI + + GEL N ++ + +
Sbjct: 5 RALTREMGLATGAVLTVLIAIALVILFIRLLGDVARGELANEAVFAFLGFSLL---YFLP 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++ ++ + R SE+VI G+S+ Q L P + ++ L + +L+ +
Sbjct: 62 VLMTISLFAGVLMPLSRMWRDSEMVIWFNAGLSLAQWLRPVLAFAVPLSLVILLLTLVLN 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI-T 183
+ D Q K + I P + + + + + P I +
Sbjct: 122 PWLQAKKNDYRQDLKARSESAL--IAPGLFAESGAGERVYYVESLNPLTGIVRNVFMQSR 179
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKL--KKVVEYQYGRIPIDKNSTTLN---IPIKMDGFQ 238
ID + ++ ++ D + + L ++ Y+ +D + +
Sbjct: 180 IDGQLGLVVAREGDHTELPDGSRYLVFRQGRRYEGTPGTLDYRVVEFERYWMRLDPVATG 239
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+S +++ + + ++ + + + +PL + + ++A +S
Sbjct: 240 GRDTNIRQKSAGDLLADPAPAARA----------ELLWRLGVPLSALVLAVMAIPLSFVN 289
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+R+ + + + F+ ++++ +++ G P A ++ + + +
Sbjct: 290 TRARRSY-GLVTALLLYFVYNNLLSLTQAWVAQGRFDPWAGMASAHLVMLLAAAGL 344
>gi|310816137|ref|YP_003964101.1| putative permease, YjgP/YjgQ family [Ketogulonicigenium vulgare
Y25]
gi|308754872|gb|ADO42801.1| putative permease, YjgP/YjgQ family [Ketogulonicigenium vulgare
Y25]
Length = 379
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 1/128 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G RY + +F L +++ +V + +Q+ + A +P I
Sbjct: 2 GRFDRYLLSQLMTLFGFFSLVLIMVYWVNRAVALFDQLIS-DGQGMWVFVEFTALSLPAI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
I+ ++P V ++ V L+ SELV+ ++ G S +++ +V ++ + ++ +
Sbjct: 61 IKLVLPLSAFVASVYVANRLSGESELVVVQSTGFSPARVMRAVMVFGLIAVVMVQILAHV 120
Query: 123 IATSGEKI 130
+ +
Sbjct: 121 LVPLSNQR 128
>gi|257454352|ref|ZP_05619615.1| permease YjgP/YjgQ family protein [Enhydrobacter aerosaccus SK60]
gi|257448255|gb|EEV23235.1| permease YjgP/YjgQ family protein [Enhydrobacter aerosaccus SK60]
Length = 385
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/366 (13%), Positives = 112/366 (30%), Gaps = 28/366 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + T LL M L+ L + + + +P +
Sbjct: 10 ILRRYMTQQVAANTAIVLLFLMALMLGGRLIRYFG-IAAEGRLDVGLLFAIIGYNIPTFL 68
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ I+P + ++V + E+ + A GIS +L + L IF + +
Sbjct: 69 ELILPLSFFIALMLVLGRMYVDQEMSVLFASGISRGRLTRLMIPLITGLFIFQMGISLLA 128
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
G + Q ++ + + + E ++ +
Sbjct: 129 KPWGLSNSKQIWQTQSLGSLLDLVRPKTFI----SSGNYHLYVDEFNKEKRELKNLYVVQ 184
Query: 184 I--DKKNKIIH---RKDADLAIIYND-------KVKLKKVVEYQYGRIPIDKNSTTL-NI 230
DK KI A A ++ L + Y+ G N +
Sbjct: 185 QQTDKSGKIAKNDVIITATRAYQVPSKDTDSSMQLDLFQGRRYELGTNNAKYNQASFEKY 244
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
I ++ + + K ++ + K + +P +++ ++
Sbjct: 245 RITLEKPASETITETNVETQTTAKLLAHTQKPEVKAELGYR------FTMPWLIIIAAML 298
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISL 350
A ++ R + ++ + +II++ + GK + A ++ +
Sbjct: 299 ATPLAQVRPRQGRWLRLLPSVLIFASCAISIISLRTAIGK-ERISEYAYIW---LIVGFI 354
Query: 351 SILILL 356
+ +LL
Sbjct: 355 AFALLL 360
>gi|89094618|ref|ZP_01167555.1| hypothetical protein MED92_00295 [Oceanospirillum sp. MED92]
gi|89081088|gb|EAR60323.1| hypothetical protein MED92_00295 [Oceanospirillum sp. MED92]
Length = 358
Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/352 (11%), Positives = 118/352 (33%), Gaps = 31/352 (8%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
++++ + ++ S + A R+P ++ I+P + +
Sbjct: 1 MFAVSAVLLVIIMSGRFVKYLSRAAA-GELDPSVLFSIMAYRLPGFLELILPLGLFLGFL 59
Query: 77 VVFFNLNRTSELVISRAIGISIWQL----LNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
+ + L SE+ + A G+S +L + P + ++++G ++ V A+ KI
Sbjct: 60 LGYGRLYLESEMTVLEATGMSQKRLVSYSMGPAIFVAVIVGSLSLFVSPYGASETNKIFD 119
Query: 133 DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIH 192
D G + ++P N ++ + + + + +N
Sbjct: 120 D------QEGRSELESLVPGRFQKNKNTGRVTYTDEVKDDGTLG----LVFMADRNHSTQ 169
Query: 193 RKDADLAIIYN-------DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFA 245
R +A + + L Y+Y P + + ++ +++
Sbjct: 170 RLQITVAETGSTLIDQDKGQRFLVLEEGYRYEGEPGQSDYVEVEFKRYGSEVERRNQEIR 229
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPR 305
Y+ ++ + + + Q + + +P++ + +TL+A +S R +
Sbjct: 230 ----YDKVEALPTAMLWGSEEPS-HQAQLNWRLSLPVLALVVTLLAVPLSRVNPRQGRFA 284
Query: 306 IIVAYGIFSGFMLY-TIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+V I + + + I + + ++ ++L
Sbjct: 285 RLV-PSILIYLTYITILSNTTSNVSEGETSP--LTIWIVHFVFAAFALNMIL 333
>gi|315638467|ref|ZP_07893644.1| conserved hypothetical integral membrane protein [Campylobacter
upsaliensis JV21]
gi|315481458|gb|EFU72085.1| conserved hypothetical integral membrane protein [Campylobacter
upsaliensis JV21]
Length = 341
Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
++++Y +L T L L +V ++ +I N + S L +P I
Sbjct: 2 KLIFKYILNQFLGTHLSIFLVLFGIVSMVFFIQIANLTSSI-EISFLDLFKLYGFMLPRI 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
+ +P V + + L++ +E V+ +G + ++ F+ + L + + V
Sbjct: 61 LIFTLPLAFFVALTLALYRLSKENESVVFFTLGFTPLKMAQFFLKIATFLSVLMLGV 117
>gi|329943108|ref|ZP_08291882.1| hypothetical protein G5Q_0787 [Chlamydophila psittaci Cal10]
gi|332287690|ref|YP_004422591.1| conserved hypothetical membrane protein [Chlamydophila psittaci
6BC]
gi|313848264|emb|CBY17265.1| conserved hypothetical membrane protein [Chlamydophila psittaci
RD1]
gi|325506627|gb|ADZ18265.1| conserved hypothetical membrane protein [Chlamydophila psittaci
6BC]
gi|328814655|gb|EGF84645.1| hypothetical protein G5Q_0787 [Chlamydophila psittaci Cal10]
gi|328914943|gb|AEB55776.1| YjgP/YjgQ family protein [Chlamydophila psittaci 6BC]
Length = 357
Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 2/128 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
ILW+ YLKT + L + + + L EI + + + + L A ++P +
Sbjct: 2 PILWKVLIFRYLKTVTFCTLSLICISIISSLQEIVSYIAK--DVPYPTVLRLTAYQIPYL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I+P + +F L+ +++ +A G S + P ++ S + +
Sbjct: 60 LPFILPISCFISAFTLFRGLSDNNQITFLKASGASQAIITFPVLMVSCAICCVNFYTCSE 119
Query: 123 IATSGEKI 130
+A+
Sbjct: 120 LASICRFQ 127
>gi|62185346|ref|YP_220131.1| hypothetical protein CAB733 [Chlamydophila abortus S26/3]
gi|62148413|emb|CAH64180.1| conserved hypothetical membrane protein [Chlamydophila abortus
S26/3]
Length = 357
Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 2/128 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
ILW+ YLKT + L + + + L EI + + + + L A ++P +
Sbjct: 2 PILWKVLIFRYLKTVTFCTLSLICISIISSLQEIVSYIAK--DVPYPTVLRLTAYQIPYL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I+P + +F L+ +++ +A G S + P ++ S + +
Sbjct: 60 LPFILPISCFISAFSLFRGLSDNNQITFLKASGASQAIITFPVLMVSCAICCVNFYTCSE 119
Query: 123 IATSGEKI 130
+A+
Sbjct: 120 LASICRFQ 127
>gi|227357023|ref|ZP_03841394.1| inner membrane protein [Proteus mirabilis ATCC 29906]
gi|227162826|gb|EEI47786.1| inner membrane protein [Proteus mirabilis ATCC 29906]
Length = 343
Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 50/338 (14%), Positives = 123/338 (36%), Gaps = 21/338 (6%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
M++ F L EI E N + L +P + Q I+P + ++ + L
Sbjct: 1 MLIFFSQKLVEILGAAVE-GNIPTNLVVSLLWLGIPEMAQLILPLSLFLGLLMTYSKLYV 59
Query: 85 TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDK 144
SE+ + A GI L+ ++ S+L + + + +++ K N
Sbjct: 60 ESEITVMNACGIGKKALVQAALLLSLLTSVLAAGNVVWLIPWSSVHQEQVLEDAKANPSL 119
Query: 145 QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK-KNKIIHRKDADLA---I 200
+ + +++ + + + + ++D + +N+ AD
Sbjct: 120 AALMEGQFKM--SSDRNMVLYLGSV--KGNQFQDVFLAQLRPTQNQRPSVVVADKGYTKE 175
Query: 201 IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSN 260
+ N +VV G T + ++ F + R ++
Sbjct: 176 LPNG----NQVVVLSEG---TRYEGTAVLRDFRITDFTDYQAVIGHRESTISRNRVEQKT 228
Query: 261 KSNIFHNYRAE--TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFML 318
+ ++H+ E +F++ + + +V M L+ +S R + + + + +
Sbjct: 229 MNELWHSTEPESIAEFHWRLTLIFSVVIMALMVVPLSEVNPRQGRV-LSMLPAMLLYLVF 287
Query: 319 YTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + + ++S G+ G + P+ A + I ++ +LL
Sbjct: 288 FLLQSSLRSSGEKGKVDPLIAMWT--VNGIYFALALLL 323
>gi|322506460|gb|ADX01914.1| permease [Acinetobacter baumannii 1656-2]
gi|323516339|gb|ADX90720.1| permease [Acinetobacter baumannii TCDC-AB0715]
Length = 350
Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/181 (12%), Positives = 55/181 (30%), Gaps = 11/181 (6%)
Query: 27 LVFVIDLNEIQNQM------GELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFF 80
++ ++ L + ++ S + R+P + I+P + ++VF
Sbjct: 2 VIALLTLIMMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLTLILPLGFFIGLMLVFG 61
Query: 81 NLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKD 140
L E+ + G+S QL + +++ + +++ + G + L
Sbjct: 62 RLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWMTPWGLREFEKLTTTQAV 121
Query: 141 NGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI-DKKNKIIHRKDADLA 199
+ I A + + +D K+ K A A
Sbjct: 122 RTGFDLVR----PREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAKEGKPDVMILAKEA 177
Query: 200 I 200
Sbjct: 178 T 178
>gi|300973446|ref|ZP_07172202.1| conserved hypothetical protein [Escherichia coli MS 45-1]
gi|300410788|gb|EFJ94326.1| conserved hypothetical protein [Escherichia coli MS 45-1]
gi|315291260|gb|EFU50620.1| conserved hypothetical protein [Escherichia coli MS 153-1]
Length = 356
Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYASVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|323188590|gb|EFZ73875.1| hypothetical protein ECRN5871_3009 [Escherichia coli RN587/1]
gi|324005417|gb|EGB74636.1| hypothetical protein HMPREF9532_04927 [Escherichia coli MS 57-2]
Length = 356
Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYASVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|91212394|ref|YP_542380.1| hypothetical protein UTI89_C3402 [Escherichia coli UTI89]
gi|117625286|ref|YP_854458.1| putative permease [Escherichia coli APEC O1]
gi|218560055|ref|YP_002392968.1| hypothetical protein ECS88_3362 [Escherichia coli S88]
gi|218691271|ref|YP_002399483.1| hypothetical protein ECED1_3630 [Escherichia coli ED1a]
gi|237706273|ref|ZP_04536754.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|91073968|gb|ABE08849.1| hypothetical protein UTI89_C3402 [Escherichia coli UTI89]
gi|115514410|gb|ABJ02485.1| putative permease [Escherichia coli APEC O1]
gi|218366824|emb|CAR04594.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli S88]
gi|218428835|emb|CAR09636.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli ED1a]
gi|226899313|gb|EEH85572.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|294492595|gb|ADE91351.1| putative permease, YjgP/YjgQ family [Escherichia coli IHE3034]
gi|307625416|gb|ADN69720.1| hypothetical protein UM146_01455 [Escherichia coli UM146]
gi|315288787|gb|EFU48185.1| conserved hypothetical protein [Escherichia coli MS 110-3]
gi|323951497|gb|EGB47372.1| permease YjgP/YjgQ family protein [Escherichia coli H252]
gi|323957869|gb|EGB53583.1| permease YjgP/YjgQ family protein [Escherichia coli H263]
Length = 356
Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYASVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|126640321|ref|YP_001083305.1| hypothetical protein A1S_0228 [Acinetobacter baumannii ATCC 17978]
gi|332874943|ref|ZP_08442794.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6014059]
gi|332736886|gb|EGJ67862.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6014059]
Length = 341
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/275 (12%), Positives = 81/275 (29%), Gaps = 14/275 (5%)
Query: 40 MGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW 99
+ S + R+P + I+P + ++VF L E+ + G+S
Sbjct: 12 VAAQGRLDASILFSIIGYRLPEFLTLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRH 71
Query: 100 QLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ 159
QL + +++ + +++ + G + L +
Sbjct: 72 QLARLLIPMTLVYMVCQSVLMLWMTPWGLREFEKLTTTQAVRTGFDLVR----PREFISS 127
Query: 160 QDIFIGAKKILPENHIWEDFTSITI-DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR 218
I A + + +D K+ K A A VV+ GR
Sbjct: 128 GPYTIYAGSLSEDRKNLKDIFFYQRAAKEGKPDVMILAKEATRVEVANDTANVVDLVQGR 187
Query: 219 IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN-----YRAETQ 273
+ ++ E F + + S +F R+E
Sbjct: 188 RYEIFPGQPKYTQAEFQSYRLRLENDKDVKFES--GDVEALSTSKLFSKANDPVVRSELG 245
Query: 274 FYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+ + P ++ +++ ++S R + ++
Sbjct: 246 W--RLFGPFTIIIALMLSVALSEVSPRQGRYYRLI 278
>gi|306816677|ref|ZP_07450809.1| hypothetical protein ECNC101_08664 [Escherichia coli NC101]
gi|305850242|gb|EFM50701.1| hypothetical protein ECNC101_08664 [Escherichia coli NC101]
Length = 356
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYASVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|291327104|ref|ZP_06127004.2| inner membrane protein YjgP [Providencia rettgeri DSM 1131]
gi|291311564|gb|EFE52017.1| inner membrane protein YjgP [Providencia rettgeri DSM 1131]
Length = 343
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/294 (11%), Positives = 93/294 (31%), Gaps = 38/294 (12%)
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
+ + L SE+ + A G+ L+ +V +++ + V I + + ++
Sbjct: 52 MTYSKLYTESEITVMHACGLGKSVLVKAALVLAVITAMVAVANITWMLPWSSQYQEQVLA 111
Query: 137 QWKDNGD---------KQKSDIIPWMQISNPQQDIF-------IGAKKILPENHIWEDFT 180
K N K D + I + + F + A + + D
Sbjct: 112 DAKANPGLAAMVEGQFKTTKDGNYVLYIGDVKGSNFKNVFLAQLRAANEQRPSVVVADSG 171
Query: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ D + + + Y L+ + + T
Sbjct: 172 YMKEDPDGRQVVVLN--EGTRYEGTALLRDFRITDFVNYQAIVDHQTAET---------R 220
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
S++ ++ ++ + + +F++ + I +V M L+ +S R
Sbjct: 221 SDRVEQKNMLQLWSE----------NTPEVNAEFHWRLTIVFSVVVMALMVVPLSEVNPR 270
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + + + + + +++ G L P + + L+I++
Sbjct: 271 QGRV-LSMLPAMLLYLIFFLLQSTLRNSADKGDLDPRYTMWAVNVGYLILAIVL 323
>gi|89070356|ref|ZP_01157663.1| Predicted permease [Oceanicola granulosus HTCC2516]
gi|89044003|gb|EAR50178.1| Predicted permease [Oceanicola granulosus HTCC2516]
Length = 370
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/192 (17%), Positives = 68/192 (35%), Gaps = 21/192 (10%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRG------AVLAATRVPLIIQQIIPFITL 72
L G LV + L N+ L + IS G +A +P II+ ++P
Sbjct: 1 MTLFGFFSLVLI--LLYWVNRAVVLFDQLISDGQSALVFLEFSALSLPAIIRIVLPLAAF 58
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPF----VVGSILLGIFTVLVINPIATSGE 128
+ + V L SEL++ ++ G S +L P ++ ++L G T +++ A
Sbjct: 59 IAALYVTNKLTTESELLVVQSTGFSPVRLARPAFVFGLIVTLLTGALTHVLVPVAAAQLG 118
Query: 129 KIGIDLIQQWKDNGDKQKS------DIIPWMQISNPQQ---DIFIGAKKILPENHIWEDF 179
++ I +++ N D+F+ + I+
Sbjct: 119 ARQDEIASNITARFLTPGQFLNPVDGITVYVRDINDAGALQDLFLADTRESGRQVIYTAA 178
Query: 180 TSITIDKKNKII 191
T+ + +
Sbjct: 179 TAYLVRSEGGPQ 190
>gi|292493019|ref|YP_003528458.1| permease YjgP/YjgQ family protein [Nitrosococcus halophilus Nc4]
gi|291581614|gb|ADE16071.1| permease YjgP/YjgQ family protein [Nitrosococcus halophilus Nc4]
Length = 374
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 46/355 (12%), Positives = 109/355 (30%), Gaps = 37/355 (10%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I+ RY K L +++ I Q E L+
Sbjct: 7 FRIVDRYILKELSLNVTAITLVLLLIFGGIRFIRFLGQATE-GKVPGETILALSTYEAIG 65
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS----IWQLLNPFVVGSILLGIFTV 117
+ ++P + I+V + SE+V+ A GIS + +L +V +I +G ++
Sbjct: 66 ALVLLLPLAAFLAVILVLGRMANDSEIVVLFACGISRGHLLRVVLAFGLVLAIGVGCISL 125
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+ + G ++ + I + +G + A+ + +
Sbjct: 126 YLGPLASAEGYRLKQEAILAAETSGLVAGNFK------KTKGGQWVFYAESLTEDRLGMR 179
Query: 178 DFTSITIDKKNKIIHRKDADL----AIIYNDKVKLKKVVEYQYGRIPIDKNSTTLN---I 230
+ + KI+ R I + + L++ Y + + I
Sbjct: 180 NVFIQVREPTQKILFRSSRGRLQTDGITGDKHLILEEGYRYDLVGNDVGIRISRFERHGI 239
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+K G Q+F + + + + AE Q+ + +P+ + + ++
Sbjct: 240 LVKKGGAQEFRIRHKTLPTLTLWEM--------GAPKDIAEVQW--RVSMPIATLLLVML 289
Query: 291 AASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS----GILLPVAAAL 341
A ++ + + Y I + M ++ ++
Sbjct: 290 AVPLA-RLEPRQGRYAGLVPAVLV----YVIYSNMLGISRNWVEHEVIPASLGLW 339
>gi|222034703|emb|CAP77445.1| hypothetical protein LF82_488 [Escherichia coli LF82]
gi|312947541|gb|ADR28368.1| hypothetical protein NRG857_14790 [Escherichia coli O83:H1 str. NRG
857C]
Length = 356
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYASVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|281180021|dbj|BAI56351.1| conserved hypothetical protein [Escherichia coli SE15]
Length = 356
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYASVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|221066429|ref|ZP_03542534.1| permease YjgP/YjgQ family protein [Comamonas testosteroni KF-1]
gi|220711452|gb|EED66820.1| permease YjgP/YjgQ family protein [Comamonas testosteroni KF-1]
Length = 369
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 50/316 (15%), Positives = 114/316 (36%), Gaps = 21/316 (6%)
Query: 20 FLLGAMILVFVIDLNEIQNQMGE--LPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIV 77
F A++L+ V+ + +G+ + S S ++ V + I+ V +
Sbjct: 15 FGATAVVLITVVMTMMLIRTLGQAYKGSVSPSDVMLVMGFTVLGQLPTILGLSLFVAIVG 74
Query: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ 137
+ R SE+VI A G + LL P + + + + T ++ + + + Q
Sbjct: 75 SLSRMYRDSEMVIWFAAGQGLASLLKPLLRFAWPVILITAVLALGVLPWSYQQIEQIKTQ 134
Query: 138 WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK-KNKIIHRKDA 196
++ D + I P + K P + + ++ D K + K A
Sbjct: 135 FQQRSDLDR--IAPGEFQESAGGTRVFFVDKDSPSDMAASNVFVVSRDPGKESVTSAKGA 192
Query: 197 DLAIIYNDK-VKLKKV--VEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFY--E 251
LA+I + V L+ +E + + + E+ A+RS +
Sbjct: 193 HLAVIKGQRMVILEDGQRMETRSDDGSVRITEFKEYGVQVDNDNPVAIEEMAARSMPTKD 252
Query: 252 IIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYG 311
+I +S + + +P + ++ ++S R+ ++
Sbjct: 253 LIGMDEPIARSV----------LAWRLGLPFAALNFVILGLAISSVNPRAGNSSSLM-IA 301
Query: 312 IFSGFMLYTIITIMKS 327
+F+ + Y ++T+ +S
Sbjct: 302 LFAFIVYYNLMTLGES 317
>gi|165933910|ref|YP_001650699.1| hypothetical protein RrIowa_1576 [Rickettsia rickettsii str. Iowa]
gi|165908997|gb|ABY73293.1| hypothetical protein RrIowa_1576 [Rickettsia rickettsii str. Iowa]
Length = 369
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 55/366 (15%), Positives = 140/366 (38%), Gaps = 20/366 (5%)
Query: 4 ILWR-YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L+R YF K L + +V++ + ++ + + L +P +
Sbjct: 11 LLYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLFDK--GIKVMDFFSLIVLVLPTL 68
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++P I ++ I ++ NL +L+I +A G++ QL P + ++++ + + +
Sbjct: 69 LFILLPVIMVITVIYIYNNLKVERQLIILQASGVNNVQLALPALYVALIVMLLAYYISST 128
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + K+N S +I + +DI + K +I
Sbjct: 129 ILPLSHINLKSRLNFIKNN---YISSMIEEKTFNKVTKDITVFIDKKSA-GNIMNGVIIF 184
Query: 183 TIDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD--- 235
+ A + + +L K + +Y T ++ IK+
Sbjct: 185 DNRNADNP-SVVFAGSGTLNIYDNSPIFELNKGIRQEYDVNGNLTQLTFDSLMIKLQNDN 243
Query: 236 --GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
Q+ + +Y I + ++ + I + + + I+ PL + +A +
Sbjct: 244 PLVSQRTKHNKEANEYY-ISELLAPPHDLAITKKIKLIAEAHQRIIWPLYNFVLPFVALA 302
Query: 294 VSLEFSRSNQPRII-VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
V L + S + + V + + ++ +I I+++F L + A +++ +++ +
Sbjct: 303 VFLRYPYSKKTTFMPVLFSALTVLLVTSIHFILQNFASKN-LDFIFACYFNLVIALTIGL 361
Query: 353 LILLQK 358
+ ++K
Sbjct: 362 YLFVRK 367
>gi|15893268|ref|NP_360982.1| hypothetical protein RC1345 [Rickettsia conorii str. Malish 7]
gi|15620488|gb|AAL03883.1| unknown [Rickettsia conorii str. Malish 7]
Length = 378
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 55/366 (15%), Positives = 140/366 (38%), Gaps = 20/366 (5%)
Query: 4 ILWR-YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L+R YF K L + +V++ + ++ + + L +P +
Sbjct: 20 LLYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLFDK--GIKVMDFFSLIVLVLPTL 77
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++P I ++ I ++ NL +L+I +A G++ QL P + ++++ + + +
Sbjct: 78 LFILLPVIMVITVIYIYNNLKVERQLIILQASGVNNVQLALPALYVALIVMLLAYYISSN 137
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + K+N S +I + +DI + K +I
Sbjct: 138 ILPLSHINLKSRLNFIKNN---YISSMIEEKTFNKVTKDITVFIDKKSA-GNIMNGVIIF 193
Query: 183 TIDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD--- 235
+ A + + +L K + +Y T ++ IK+
Sbjct: 194 DNRNADNP-SVVFAGSGTLNIYDNSPIFELNKGIRQEYDVNGNLTQLTFDSLMIKLQNDN 252
Query: 236 --GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
Q+ + +Y I + ++ + I + + + I+ PL + +A +
Sbjct: 253 PLVSQRTKHNKEANEYY-ISELLAPPHDLAITKKIKLIAEAHQRIIWPLYNFVLPFVALA 311
Query: 294 VSLEFSRSNQPRII-VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
V L + S + + V + + ++ +I I+++F L + A +++ +++ +
Sbjct: 312 VFLRYPYSKKTTFMPVLFSALTVLLVTSIHFILQNFASKN-LDFIFACYFNLVIALTIGL 370
Query: 353 LILLQK 358
+ ++K
Sbjct: 371 YLFVRK 376
>gi|317477113|ref|ZP_07936354.1| hypothetical protein HMPREF1016_03338 [Bacteroides eggerthii
1_2_48FAA]
gi|316906656|gb|EFV28369.1| hypothetical protein HMPREF1016_03338 [Bacteroides eggerthii
1_2_48FAA]
Length = 635
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/193 (13%), Positives = 62/193 (32%), Gaps = 6/193 (3%)
Query: 13 YLKTTLYFLLGAMILVFVIDLNEIQNQ-MGELPNYSISR--GAVLAATRVPLIIQQIIPF 69
LK+ +G + I + + + + E+ + A ++ +P
Sbjct: 11 ILKSFCLLFMGTFFICLFIFMMQFLWKYVDEMVGKGLEMNVLAQFFFYSALTLVPASLPL 70
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
L+ ++ F N EL+ +A GIS+ +++ P + L+ + N I +
Sbjct: 71 AILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIFFISLICCVSFYFQNVIGPKAQT 130
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
L+ K + + + + K E + D +K +
Sbjct: 131 KLWTLLVSMKQKSPEVDIPEGVFYDEIDGYN---LYVKHKNRETGMLYDVLIYNFEKGFE 187
Query: 190 IIHRKDADLAIIY 202
+D +
Sbjct: 188 NAQIIKSDSGRLE 200
Score = 37.1 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
SF+ R T ++ + + L + I A + R + V +
Sbjct: 353 WSFKSFNISQTETSLRRHMTSWHEKLTLSLACLIFFFIGAPLG-GIIRKGGLGMPVVVSV 411
Query: 313 F 313
Sbjct: 412 L 412
>gi|191172497|ref|ZP_03034037.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
gi|300993119|ref|ZP_07180205.1| hypothetical protein HMPREF9553_04259 [Escherichia coli MS 200-1]
gi|190907165|gb|EDV66764.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
gi|300305134|gb|EFJ59654.1| hypothetical protein HMPREF9553_04259 [Escherichia coli MS 200-1]
gi|324011925|gb|EGB81144.1| hypothetical protein HMPREF9533_04083 [Escherichia coli MS 60-1]
Length = 356
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYASVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|332976302|gb|EGK13159.1| permease YjgP/YjgQ [Psychrobacter sp. 1501(2011)]
Length = 467
Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 53/149 (35%), Gaps = 4/149 (2%)
Query: 40 MGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW 99
+ + + +P ++ ++P + ++VF L E+ + GIS
Sbjct: 31 IAAEGRLDVGLLFAIIGYNLPYFLELVLPLSFFIGLMLVFGRLYVDQEMAVLNGSGISRG 90
Query: 100 QLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ 159
+L + +LL +F + G + ++ QQ + I P IS+
Sbjct: 91 RLARLMIPFILLLFVFEAGLSLYGKPWGVRNSENIWQQQSLSSAFDL--IRPQTFISSDD 148
Query: 160 QDIFIGAKKILPENHIWEDFTSITIDKKN 188
+++G + + +D + +
Sbjct: 149 YHLYVG--SMNDDRTELQDVILVQTADQG 175
>gi|331659262|ref|ZP_08360204.1| putative permease [Escherichia coli TA206]
gi|315297643|gb|EFU56920.1| conserved hypothetical protein [Escherichia coli MS 16-3]
gi|331053844|gb|EGI25873.1| putative permease [Escherichia coli TA206]
Length = 356
Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYASVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|270295684|ref|ZP_06201885.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270274931|gb|EFA20792.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 617
Score = 56.4 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/187 (12%), Positives = 61/187 (32%), Gaps = 5/187 (2%)
Query: 18 LYFLLGAMILVFVIDLNEIQNQMGELPNYSISR--GAVLAATRVPLIIQQIIPFITLVVN 75
+ F+ I +F+ + + + E+ + A ++ +P L+
Sbjct: 1 MLFMGTFFICLFIFMMQFLWRYVDEMVGKGLEMTVLAQFFFYSALSLVPASLPLAILLAA 60
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
++ F N EL+ +A GIS+ +++ P ++ + + N I + L+
Sbjct: 61 LITFGNFGERFELLAMKAAGISLLKIMRPLIIFICFICCVSFYFQNVIGPKAQTKLWTLL 120
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKD 195
K + + + + K + + D +K +
Sbjct: 121 ISMKQKSPEVDIPEGVFYDEIDGYN---LYVKHKNRKTGMLYDVLIYNFEKGFENAQIIK 177
Query: 196 ADLAIIY 202
+D +
Sbjct: 178 SDSGRLE 184
Score = 37.5 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
SF+ R T ++ + + L + I A + R + V +
Sbjct: 336 WSFKSFNISQTESSLRRHMTSWHEKLTLSLACLIFFFIGAPLG-GIIRKGGLGMPVVVSV 394
Query: 313 F 313
Sbjct: 395 L 395
>gi|295134703|ref|YP_003585379.1| permease [Zunongwangia profunda SM-A87]
gi|294982718|gb|ADF53183.1| permease [Zunongwangia profunda SM-A87]
Length = 407
Score = 56.4 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 3/102 (2%)
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
IKK F S + + E + V+ + + + + A + R + + I
Sbjct: 274 IKKQEFKQSSRRLN--KYEIALHEKYVLAVACIVLFFVGAPLGA-IIRKGGMGLPMVIAI 330
Query: 313 FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ I K+ + G + P A + ++ + L I
Sbjct: 331 IIFLSYHFIGIFAKNSAEDGSISPFIATWLSTLIMLPLGIYF 372
Score = 45.2 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 41/125 (32%), Gaps = 3/125 (2%)
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
+VF + E ++ GIS+ + + + +L+ I + N + + E I+L +
Sbjct: 1 MVFGSFAENYEFAAMKSSGISLQRAMRGLTLFIVLVSITAFVFANNVIPAAEFKIINLRK 60
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDA 196
+ ++ N + KK + D T ++ +
Sbjct: 61 NIAKMKPAMAITAGVFNEVGNINIKV---DKKSGDNDQYLHDVIIHTGTERGGDYTVIKS 117
Query: 197 DLAII 201
+
Sbjct: 118 KEGEL 122
>gi|297517382|ref|ZP_06935768.1| hypothetical protein EcolOP_07050 [Escherichia coli OP50]
Length = 340
Score = 56.4 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 63/175 (36%), Gaps = 5/175 (2%)
Query: 21 LLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNIVV 78
++ L+F+ Q + E N +++ VL +V + ++ ++P V V
Sbjct: 1 MIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVGVT 60
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
+ SE+ A G S +L + +I L IF L+ L QQ
Sbjct: 61 LGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQQS 120
Query: 139 KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
+ D ++ + + + I ++ + +N+ D T I R
Sbjct: 121 QSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 172
>gi|215919050|ref|NP_819829.2| putative permease [Coxiella burnetii RSA 493]
gi|206583935|gb|AAO90343.2| hypothetical membrane spanning protein [Coxiella burnetii RSA 493]
Length = 372
Score = 56.4 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 104/320 (32%), Gaps = 26/320 (8%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I++RY K L T L L +I+ N ++ + + +VP
Sbjct: 1 MSVIVFRYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAAA-GKITVKAVMEIMSLQVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L++ ++P + ++ + E+VI A G+S Q++ +V + +G+ ++
Sbjct: 60 LLLGYLLPLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLM 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + +++ +K Q+ + +F A + + +
Sbjct: 120 LSVEPKMQWYRVKILKDAVATASLEKIVPGR-FQLLSSNGQVF-YAGGVNDHHQKMLNVF 177
Query: 181 SITIDKKNKIIHR--KDADLA-----IIYNDKVKLKKVVEY-----QYGRIPIDKNSTTL 228
+ AD A + + K Y + + +
Sbjct: 178 LAQSETAGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGI 237
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ + + + + + K + +A + + I +PL +
Sbjct: 238 RLTSPAMDITERVDAMPTSKLWHLHSK-----------DLKAAAELQWRIAMPLSVWLFA 286
Query: 289 LIAASVSLEFSRSNQPRIIV 308
L+ +S R + ++
Sbjct: 287 LLIVPLSEANPRKGKFAQML 306
>gi|62185347|ref|YP_220132.1| hypothetical protein CAB734 [Chlamydophila abortus S26/3]
gi|62148414|emb|CAH64181.1| conserved hypothetical membrane protein [Chlamydophila abortus
S26/3]
Length = 367
Score = 56.4 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 59/376 (15%), Positives = 129/376 (34%), Gaps = 47/376 (12%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEI--------QNQMGELPNYSISRGAVLAATRV 59
Y +K Y+ T +F L ++I++ + I N S+ + ++
Sbjct: 2 YIWKRYVLTKFWFSLVSLIVLAFVFYASIHHSLHTIKGNTTSLASGASLKLSILYYLAQI 61
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
L + +IP + V + F++ E+++ +A G+S+ L P + S ++ +
Sbjct: 62 ALKAEFLIPQLVAVATTITLFSMQNKREVLLLQASGLSLKSLTAPLIHSSFIITLLLYAN 121
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ E+I + DK D +P + + + + I +
Sbjct: 122 FQWLHPICEQISTTKEHIDRGTLDK-VQDKVPALYLKD---QTVLLYSSIEQKTLTLNQV 177
Query: 180 -------TSITID---------KKNKIIHRKDA-DLAIIY-NDKVKLKKVVEYQYG--RI 219
T T++ + R A + + ++ +K+ E ++G
Sbjct: 178 FWIKNPKTIYTMEKLAFTTPSLPIGLDVIRFSATESGSMELSEYSDMKEFPEIEFGFYDN 237
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
P K T + FQ I + S S FY++++
Sbjct: 238 PFSKIFTAGGKNRLSESFQAIPWNATGLGLSTTIPQRILSLLST----------FYYMLI 287
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
PL ++ +I+A + L FSR + + + + + S +L
Sbjct: 288 SPLACISSMIISAYLCLRFSRVPTVTLAYLVPLGTINTFFIFLKAGMVLANSSVLPI--- 344
Query: 340 ALIPVILTISLSILIL 355
+PV+ + + I+
Sbjct: 345 --LPVMFFPLIILAII 358
>gi|163856081|ref|YP_001630380.1| hypothetical protein Bpet1772 [Bordetella petrii DSM 12804]
gi|163259809|emb|CAP42110.1| putative membrane protein [Bordetella petrii]
Length = 397
Score = 56.4 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 106/320 (33%), Gaps = 10/320 (3%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
LAA + ++ + + R SE+V+ A G+S+ L
Sbjct: 72 GTIGADVVLGLAAFSTITALPTVLAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWLR 131
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
P + +I + ++ + + + ++++ D K + + +
Sbjct: 132 PVLRVAIPVAGLVAVLTLVASPWAYRQIAEYRERFEQRSDLSKVTAGQFA--ESGEGQRV 189
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY---NDKVKLKKVVEYQYGRIP 220
A++ + + + + A A I N L ++Y P
Sbjct: 190 FFAEEPTQASDELGNVFARETGPEWH--SVMTASSARIETEPNGDRFLVLGRGHRYDLKP 247
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQF--ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
++ + S +R+ E K + + + +Q + +
Sbjct: 248 GTPEIRLVDFAKYGVRLESKSGDPIAEARAAAERSSKARPTMQLVADDTDSSWSQIMWRV 307
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVA 338
+PL + + L+A + R + ++ G G + +I + +++ SG L
Sbjct: 308 SMPLAALNLALLAIPLGAVNPRLGRSGDLLIAG-LVGLLYMNVINLSRAWISSGKLPFGI 366
Query: 339 AALIPVILTISLSILILLQK 358
+ ++L+ +L+++
Sbjct: 367 GVWAVHAVVLALAGYLLMRR 386
>gi|237752929|ref|ZP_04583409.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229375196|gb|EEO25287.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 344
Score = 56.4 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/326 (12%), Positives = 103/326 (31%), Gaps = 28/326 (8%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
+ F+ + + L + V+ I + + S L +P ++ +I
Sbjct: 6 FLFQSFAQVFFPIFLVLFFIASVVIFIRIAG-VTFVVKISFLELLTLYFYTLPTMLFFVI 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P V ++ L+ EL + A+G++ +++ F ++L + ++ +
Sbjct: 65 PLSFFVACVLGLSRLSFDYELPVLFALGMNPKKIVKIFFPIALLASVSLFVLSLILTPLS 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ +++ K + D + + +K +N +E+ +++ K
Sbjct: 125 DIAYRQFLEERKSSIDVNLQAGEF----GQKLGEWLVYVQK--GKNSTYENIVLLSLQAK 178
Query: 188 NKIIH-RKDADLAIIYN----DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
A A I N + L Y+ + ++ +
Sbjct: 179 GSQKDGLVFAKQANIGNVDGVMEAHLSDGKIYR----KVSDGVERISFDEMILRSAVDFT 234
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI-PLMLVA-MTLIAASVSLEFSR 300
S E + +++ + Y L+ + PL+ + + + R
Sbjct: 235 GDGSVGLVEYWNR--AFYENSRQDKTKRNLSMYVLLSLFPLISLFYFPFLGV----KNPR 288
Query: 301 SNQ----PRIIVAYGIFSGFMLYTII 322
+ + +V G+F M
Sbjct: 289 YQKNYTILQAMVVVGVFFALMYIVAT 314
>gi|29840523|ref|NP_829629.1| YjgP/YjgQ family protein [Chlamydophila caviae GPIC]
gi|29834872|gb|AAP05507.1| YjgP/YjgQ family protein [Chlamydophila caviae GPIC]
Length = 367
Score = 56.0 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 58/375 (15%), Positives = 130/375 (34%), Gaps = 47/375 (12%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEI--------QNQMGELPNYSISRGAVLAATRV 59
Y +K Y+ T + L ++I++ + I N S+ + +++
Sbjct: 2 YIWKRYVLTKFWLSLVSLIVLAFVFYASIHHSLHAIKGNSTALASGASLKLSVLYYLSQI 61
Query: 60 PLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
L + +IP + V + F++ E+++ +A G+S+ L P + S ++ +
Sbjct: 62 ALKAEFLIPQLVAVATTITLFSMQNKREVLLLQASGLSLKSLTAPLIRSSFIITLLLYAN 121
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ EKI + DK D +P + + + + I +
Sbjct: 122 FQWLHPICEKISTTKEHMDRGTLDKA-QDKVPALYLKD---QTVLLYSSIEQKALTLNKV 177
Query: 180 -------TSITIDKKN----------KIIHRKDADLAIIY-NDKVKLKKVVEYQYG--RI 219
T T++K +I + + + ++ +K+ E ++G
Sbjct: 178 FWIKNPKTIYTMEKLAFTTPSLPIGLDVIRFSETESGTMELSEFSDMKEFPEIEFGFYDN 237
Query: 220 PIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
P K T + F+ I + S S FY++++
Sbjct: 238 PFSKIFTAGGKNRLSESFRAIPWNATGLGLSTTIPQRISSLLST----------FYYMLI 287
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
PL ++ +++A + L FSR + + + + + S +L
Sbjct: 288 SPLACISAMILSAYLCLRFSRVPTVTLAYLVPLGTINTFFVFLKAGMVLSNSSVLPI--- 344
Query: 340 ALIPVILTISLSILI 354
+PV+L + + I
Sbjct: 345 --LPVMLFPLVVLAI 357
>gi|301048205|ref|ZP_07195241.1| conserved hypothetical protein [Escherichia coli MS 185-1]
gi|300299963|gb|EFJ56348.1| conserved hypothetical protein [Escherichia coli MS 185-1]
Length = 356
Score = 56.0 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F Q + E N +++ VL +V + ++ ++P
Sbjct: 15 LVLIIVGFLIFFFARYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYASVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|323137915|ref|ZP_08072990.1| permease YjgP/YjgQ family protein [Methylocystis sp. ATCC 49242]
gi|322396918|gb|EFX99444.1| permease YjgP/YjgQ family protein [Methylocystis sp. ATCC 49242]
Length = 388
Score = 56.0 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 4/164 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP +L+ Y FK L L + V + L I + P
Sbjct: 1 MPRLLFSYLFKRVGFGVLIVQLALSVPVVLSYLLYQLPPAAVRGGLVIPALVGIT----P 56
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ +P V + F + + + A+ +S W + P + + + + +
Sbjct: 57 TVAYVTLPMAVGVATALEFSRMASEGMIAVLYALRLSAWSICRPALTLAAGIVVLGYALA 116
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
N IA D++ +++ + + D + N + ++I
Sbjct: 117 NFIAPHYATNMQDVLNVVRNSLNHRMLDAAHFYTFDNGVKTLYI 160
>gi|300690719|ref|YP_003751714.1| permease, predicted YjgP/YjgQ family [Ralstonia solanacearum PSI07]
gi|299077779|emb|CBJ50417.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
solanacearum PSI07]
Length = 372
Score = 56.0 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 40/366 (10%), Positives = 117/366 (31%), Gaps = 43/366 (11%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
+ L T + ++ + L M S + +L + ++
Sbjct: 7 LRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLATLGYLAILLCA 66
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
+ ++V + SE+V+ GIS+ + P + S+ + L+ +
Sbjct: 67 TLFISVLLVLTRWYKDSEMVVWFTAGISLTDFIRPVLRFSLPFVVLVALLALFGWPWANQ 126
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHIWEDFTS 181
+++ +++ ++ +FI A+ + N +D
Sbjct: 127 QSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANA-AQDKIG 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKK--------VVEYQYGRIPIDKNSTT--LNIP 231
+ + K + + D ++ + + + +VE+ + + N+P
Sbjct: 186 VALAKTGEFKTSPNGDRYVLLDKGRRYEGTPGQLDYRIVEFDRYGVKVASKPPQADANLP 245
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K + + E++ ++ +PL+ + LIA
Sbjct: 246 TKSRPTTELLANPTPENMGELVWRIG----------------------LPLLALNFVLIA 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
++ R + ++ + ++ + +++ G + + A P+ L +
Sbjct: 284 IPLAYVNPRLGRYTPMIF-AVLIYLTYSNLLNLSQAWVAQGKMNAMLA-WWPIHLAAFVC 341
Query: 352 ILILLQ 357
++L +
Sbjct: 342 AMLLFR 347
>gi|320195130|gb|EFW69759.1| Permease Ygh-P1, YjgP/YjgQ family [Escherichia coli WV_060327]
Length = 356
Score = 56.0 bits (134), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYASVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V+ + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VMLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|238651117|ref|YP_002916975.1| hypothetical protein RPR_07620 [Rickettsia peacockii str. Rustic]
gi|238625215|gb|ACR47921.1| hypothetical protein RPR_07620 [Rickettsia peacockii str. Rustic]
Length = 369
Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 56/366 (15%), Positives = 141/366 (38%), Gaps = 20/366 (5%)
Query: 4 ILWR-YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L+R YF K L + +V++ + ++ + + L +P +
Sbjct: 11 LLYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLFDK--GIKVMDFFSLIVLVLPTL 68
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++P IT++ I ++ NL +L+I +A G++ QL P + ++++ + + +
Sbjct: 69 LFILLPVITVITVIYIYNNLKVERQLIILQASGVNNVQLALPALYVALIVMLLAYYISSN 128
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + K+N S +I + +DI + K +I
Sbjct: 129 ILPLSHINLKSRLNFIKNN---YISSMIEEKTFNKVTKDITVFIDKKSA-GNIMNGVIIF 184
Query: 183 TIDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD--- 235
+ A + + +L K + +Y T ++ IK+
Sbjct: 185 DNRNADNP-SVVFASSGTLNIYDNSPIFELNKGIRQEYDVNGNLTQLTFDSLMIKLQNDN 243
Query: 236 --GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
Q+ + +Y I + ++ + I + + + I+ PL + +A +
Sbjct: 244 PLVSQRTKHNKEANEYY-ISELLAPPHDLAITKKIKLIAEAHQRIIWPLYNFVLPFVALA 302
Query: 294 VSLEFSRSNQPRII-VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
V L + S + + V + + ++ +I I+++F L + A +++ +++ +
Sbjct: 303 VFLRYPYSKKTTFMPVLFSALTVLLVTSIHFILQNFASKN-LDFIFACYFNLVIALTIGL 361
Query: 353 LILLQK 358
+ ++K
Sbjct: 362 YLFVRK 367
>gi|327405435|ref|YP_004346273.1| permease YjgP/YjgQ family protein [Fluviicola taffensis DSM 16823]
gi|327320943|gb|AEA45435.1| permease YjgP/YjgQ family protein [Fluviicola taffensis DSM 16823]
Length = 495
Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/197 (15%), Positives = 77/197 (39%), Gaps = 13/197 (6%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
F ++ T ++ ++ + ++++ + ++ L +I +P
Sbjct: 12 FGGPFVVTFFISMVMLIMQFTWVYIDDLMGK-----GLGVAVIIELMFYVSAGLIPLALP 66
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
L+ +I+ NL +EL ++ G+S++++L P I++ T N +
Sbjct: 67 LAILLSSIMTLGNLAENNELTALKSSGLSLFRILRPLTQTVIVIATATFFFANYVIPVAN 126
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKI-LPENHIWEDFTSITIDKK 187
+I D Q++ + + + ++I A KI +++ ++ T
Sbjct: 127 LKWHTIIY------DIQETKVGMLLTPGSYTKEIEGYAIKIKSGKDNTFKGITIHDYTNP 180
Query: 188 NKIIHRKDADLAIIYND 204
N ++ AD I+Y
Sbjct: 181 N-VLKTVKADSGIVYKG 196
Score = 42.5 bits (99), Expect = 0.10, Method: Composition-based stats.
Identities = 9/79 (11%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ +F+ + ++ + + A + R V + + + ++ ++
Sbjct: 384 YQIEFHRKFALSGAIIVLFFVGAPLGA-IIRKGGFGAPVVIAALLFMVYFVLFSVGQNLA 442
Query: 330 KSG--ILLPVAAALIPVIL 346
S IL P +P +
Sbjct: 443 TSNDKILSPFWGMWLPTAV 461
>gi|269467941|gb|EEZ79676.1| permease [uncultured SUP05 cluster bacterium]
Length = 373
Score = 55.2 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 53/364 (14%), Positives = 123/364 (33%), Gaps = 34/364 (9%)
Query: 14 LKTTLYFLLGAMILVFVIDL---NEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFI 70
++ L L I++ ++ + +S L + ++ + I+
Sbjct: 1 MRNVLVMLSAVFIIIGLVVFGNQLVLVINQSLKEGIPVSDLLPLISFKMIRDVPLILSLS 60
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
+ I+ L + SE ++ ++G+ Q + I + IF + + +
Sbjct: 61 LFLAIILSVSRLYKDSEAIVMNSLGLGDKQFMLFIQPIVIAIFIFILFLTTYAVPWSKHQ 120
Query: 131 GIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN----HIWEDFTSITIDK 186
++ + ++ + + D+ A K+ E+ T+
Sbjct: 121 RNMVMDRTENASEFSFIKEGEF--QEFKDGDVVFYASKVKAGGELGQQEMEEIFIYTLSN 178
Query: 187 KNKIIHRKDADLAIIYND------KVKLKKVVEYQYGRIPIDKNSTTLNIPI-KMDGFQK 239
II A A Y D ++LK Y P D N LN + +
Sbjct: 179 DESIITL--AKQANKYTDGITKSVYLRLKDGTRYH--GFPGDTNKKILNFDLYDLKIIDG 234
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE--TQFYFLIVIPLMLVAMTLIAASVSLE 297
E+ + I K+ + ++F + + ++ + + P+ V + I + +
Sbjct: 235 DKEKTK-----DTIVKVEGQDTFDLFRSDGLKEVSELQWRLSQPI-SVLILSILGILLGK 288
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIIT---IMKSFGKSGILLPVAAALIPVILTISLSILI 354
S + V +G+ F+LY + KS + G + P+ +L + + +
Sbjct: 289 SSPRGGKNLGVLFGVVV-FILY--NNALLVAKSNLEQGSVHPIVGLWWVHLLMVLIIFIF 345
Query: 355 LLQK 358
L +
Sbjct: 346 YLYR 349
>gi|254491489|ref|ZP_05104668.1| putative permease, YjgP/YjgQ family [Methylophaga thiooxidans
DMS010]
gi|224462967|gb|EEF79237.1| putative permease, YjgP/YjgQ family [Methylophaga thiooxydans
DMS010]
Length = 344
Score = 55.2 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/254 (12%), Positives = 80/254 (31%), Gaps = 20/254 (7%)
Query: 66 IIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVV----GSILLGIFTVLVIN 121
++P + ++ ++ +EL + A GIS +++ ++ ++++ + ++ V+
Sbjct: 42 LLPIGAFLAVMLTLGRMSSDNELTVMAACGISTSRVMRNVMLFSGTIALMVAVLSLFVVP 101
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + Q + + +I + D ++ + E+
Sbjct: 102 ------DVMSDRYELQTRAKMSANTTGLIAGSFKESGDGDWTFYSEGLSANKQFMENVFI 155
Query: 182 ITIDKKNKIIHRKDADL----AIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
K +I R + A+ N + L+K Y+ D +
Sbjct: 156 EIEGKDKPLIFRSETGHFEIDAVTGNKFLVLEKGYRYEGNAGDQDFTIAQFASHSLLVEK 215
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFH-NYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
E + + + +I +R L+ L L+AM L A+
Sbjct: 216 GDAGEVRERHKAMPTGELLERGSARDIAEVQWRTSAALMTLL---LCLMAMPL--ANAGP 270
Query: 297 EFSRSNQPRIIVAY 310
R V
Sbjct: 271 RQGRYAGFVPAVLL 284
>gi|300703337|ref|YP_003744939.1| permease [Ralstonia solanacearum CFBP2957]
gi|299071000|emb|CBJ42309.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
solanacearum CFBP2957]
Length = 372
Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/366 (10%), Positives = 117/366 (31%), Gaps = 43/366 (11%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
+ L T + ++ + L M S + +L + ++
Sbjct: 7 LRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLATLGYLAILLCA 66
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
+ ++V + SE+V+ G+S+ + P + S+ + L+ +
Sbjct: 67 TLFISVLLVLTRWYKDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVALLALFGWPWANQ 126
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHIWEDFTS 181
+++ +++ ++ +FI A+ + N +
Sbjct: 127 QSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANAEADKI-G 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKK--------VVEYQYGRIPIDKNSTTL--NIP 231
+ + K + + D ++ + + + +VE+ + + + N+P
Sbjct: 186 VALAKTGEFKTSPNGDRYVLLDKGRRYEGTPGQLDYRIVEFDRYGVKVASKPPQVDANLP 245
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K + + E++ ++ +PL+ + LIA
Sbjct: 246 TKSRPTTELLSNPTPENLGELVWRIG----------------------LPLLALNFVLIA 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
++ R + ++ + ++ + +++ G + + A P+ L +
Sbjct: 284 VPLAYVNPRLGRYTPMIF-AVLIYLTYSNLLNLSQAWVAQGKMNAMLA-WWPIHLLAFVC 341
Query: 352 ILILLQ 357
++L +
Sbjct: 342 AVLLFR 347
>gi|218701755|ref|YP_002409384.1| hypothetical protein ECIAI39_3475 [Escherichia coli IAI39]
gi|227887687|ref|ZP_04005492.1| inner membrane protein [Escherichia coli 83972]
gi|301019930|ref|ZP_07184065.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|218371741|emb|CAR19592.1| conserved hypothetical protein; putative membrane protein
[Escherichia coli IAI39]
gi|227835083|gb|EEJ45549.1| inner membrane protein [Escherichia coli 83972]
gi|299882028|gb|EFI90239.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|307555075|gb|ADN47850.1| putative permease [Escherichia coli ABU 83972]
Length = 356
Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G + +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGNPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|239815707|ref|YP_002944617.1| permease YjgP/YjgQ family protein [Variovorax paradoxus S110]
gi|239802284|gb|ACS19351.1| permease YjgP/YjgQ family protein [Variovorax paradoxus S110]
Length = 379
Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/347 (12%), Positives = 112/347 (32%), Gaps = 28/347 (8%)
Query: 15 KTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVV 74
++ L+ + +V + L + + + S ++ A V + I+ +
Sbjct: 13 RSFGATLVVLVTIVMTMMLIRTLG-LASKGSVNPSEVFLVMAYTVLGYMPTILSLSLFIA 71
Query: 75 NIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDL 134
+ + R SE+VI + G + + P + + + ++ I +
Sbjct: 72 IVGTLSRMYRDSEMVIWFSSGRGLADFVEPLFRFAWPVLVLIAVMALLGWPWANSQTIGM 131
Query: 135 IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRK 194
Q++ D ++ + + S + FI K P+ + +++ +I
Sbjct: 132 RAQYEGRSDIERVTPGEFRESSGRMRVFFI--DKDTPDGATATNVFIWAVERGLQITT-- 187
Query: 195 DADLAIIY----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFY 250
A I N + L + +P + + + + + S
Sbjct: 188 SARSGRIENVGNNRFLMLSNGQRLERPLLPTAGLKI-----SEFETYGTRAGGTSDFSAD 242
Query: 251 EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY 310
+ + + + + + I + L + L+A +VS R + + +
Sbjct: 243 NTPARAKPTLQLLREPGDASHGELAWRIGMLLAAINFVLLALTVSSVNPRVGRSG-NLLF 301
Query: 311 GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+F+ + Y ++ + +S I S ++LL
Sbjct: 302 ALFAFVVYYNMLNLGQS-------------WISSGRFSMGSFMLLLH 335
>gi|83746689|ref|ZP_00943738.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
UW551]
gi|207721411|ref|YP_002251852.1| permease protein [Ralstonia solanacearum MolK2]
gi|207742608|ref|YP_002259000.1| permease protein [Ralstonia solanacearum IPO1609]
gi|83726642|gb|EAP73771.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
UW551]
gi|206586570|emb|CAQ17157.1| permease protein [Ralstonia solanacearum MolK2]
gi|206594002|emb|CAQ60929.1| permease protein [Ralstonia solanacearum IPO1609]
Length = 387
Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/366 (10%), Positives = 117/366 (31%), Gaps = 43/366 (11%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
+ L T + ++ + L M S + +L + ++
Sbjct: 22 LRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLATLGYLAILLCA 81
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
+ ++V + SE+V+ G+S+ + P + S+ + L+ +
Sbjct: 82 TLFISVLLVLTRWYKDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVALLALFGWPWANQ 141
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHIWEDFTS 181
+++ +++ ++ +FI A+ + N +
Sbjct: 142 QSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANAEADKI-G 200
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKK--------VVEYQYGRIPIDKNSTTL--NIP 231
+ + K + + D ++ + + + +VE+ + + + N+P
Sbjct: 201 VALAKTGEFKTMPNGDRYVLLDKGRRYEGTPGQLDYRIVEFDRYGVKVASKPPQVDANLP 260
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K + + E++ ++ +PL+ + LIA
Sbjct: 261 TKSRPTTELLSNPTPENLGELVWRIG----------------------LPLLALNFVLIA 298
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
++ R + ++ + ++ + +++ G + + A P+ L +
Sbjct: 299 VPLAYVNPRLGRYTPMIF-AVLIYLTYSNLLNLSQAWVAQGKINAMLA-WWPIHLLAFIC 356
Query: 352 ILILLQ 357
++L +
Sbjct: 357 AVLLFR 362
>gi|329907053|ref|ZP_08274545.1| hypothetical protein IMCC9480_3108 [Oxalobacteraceae bacterium
IMCC9480]
gi|327547110|gb|EGF31984.1| hypothetical protein IMCC9480_3108 [Oxalobacteraceae bacterium
IMCC9480]
Length = 376
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 52/361 (14%), Positives = 124/361 (34%), Gaps = 24/361 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATRVPL 61
I R + + T + + L +I Q G++ + + AA
Sbjct: 2 IFQRALRRELISTAGAVFTTLFTITITVMLIKILGQAAGGKVASEDVLALIGFAALN--- 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+ T + ++V + SE+V+ A G+S+ + + + + + + L+
Sbjct: 59 YMPVILILTTFISVLLVVTRSYQDSEMVVWFASGLSLTRWIPTVLSCGLPVVLVIALLSF 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + ++++ D K + P + + + + + +
Sbjct: 119 YATPWANRSSSEFRERFEKRADIAK--VAPGKFQESASSNRVFFVEGVTGDAMNVRNVFV 176
Query: 182 ITI-DKKNKIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDKNSTTLNIPIKM--DG 236
T+ D K+ I+ K+ + N + L Y+ D +
Sbjct: 177 NTVRDGKSSIVVSKEGRTEVDANGDKFLVLSNGRRYEGTLDERDFQLMEFESYGVLISSA 236
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
+SRS M+ + F+ + + + + +PLM + + L+A +
Sbjct: 237 VPGLMADLSSRSM----STMALLANPDGFN----QGELLWRLSLPLMCLFLMLLAIPLGF 288
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYT-IITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + ++ F+ Y+ +I++M++ L A PV + I +L
Sbjct: 289 VNPRGGRSANLIIA--LLLFVFYSNMISLMQAAVAQNRLGVWLA-WWPVHVLAMAVIALL 345
Query: 356 L 356
Sbjct: 346 F 346
>gi|149193964|ref|ZP_01871062.1| hypothetical protein CMTB2_02728 [Caminibacter mediatlanticus TB-2]
gi|149135917|gb|EDM24395.1| hypothetical protein CMTB2_02728 [Caminibacter mediatlanticus TB-2]
Length = 323
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 1/135 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y +L L ++ +I + I N ++ + +P I+ +
Sbjct: 7 YILNQFLPLFLTIFFVISAIISLIYIITISNITSKI-QITFIELLKFYILSMPQILLITL 65
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
+ I ++ L+ T EL+ ++G LLNP ++ +ILL + ++
Sbjct: 66 AISFFISAINLYSKLSETQELIALFSLGFKPKTLLNPILLLAILLTFINLFILFISIPYA 125
Query: 128 EKIGIDLIQQWKDNG 142
+ +L + K
Sbjct: 126 KMNFNNLKNEKKQEA 140
>gi|134296646|ref|YP_001120381.1| permease YjgP/YjgQ family protein [Burkholderia vietnamiensis G4]
gi|134139803|gb|ABO55546.1| permease YjgP/YjgQ family protein [Burkholderia vietnamiensis G4]
Length = 363
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/325 (11%), Positives = 108/325 (33%), Gaps = 12/325 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAAS-GEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V R SE+V+ A G+S+ +L+ P V + + +
Sbjct: 61 AVMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + ++ + FI +K+ P+ ++ +T
Sbjct: 121 WPWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFI--EKMSPDQSKVQNV-FVT 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K+ + + + + + T K+ FQ++ +
Sbjct: 178 STENGKVNVVVS------HAGHTETRDGDRFVVLEDGRRYDGTPGQPNFKIMEFQRYGVK 231
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAET-QFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S + S + + R +F + +PL+ + + ++ +S + R +
Sbjct: 232 ITSTPVTNVPTTNSTPTPELLSNPTRNNLAEFAWRAGLPLIAINLMVLGIPLSYQNPRRS 291
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKS 327
+ I + + ++ ++++
Sbjct: 292 RT-INLVMAVLIYLTYSNLLNVVQA 315
>gi|190572727|ref|YP_001970572.1| putative transmembrane permease [Stenotrophomonas maltophilia
K279a]
gi|190010649|emb|CAQ44258.1| putative transmembrane permease protein [Stenotrophomonas
maltophilia K279a]
Length = 360
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/366 (12%), Positives = 119/366 (32%), Gaps = 28/366 (7%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY ++++ L L+ +++ L +I + + + +
Sbjct: 4 LDRYLLGDFVQSFLATLIVLLVVSVGGVLVDILGNIAD-GRLPAKLLFSQLGLQFIAYLP 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I+P ++ ++ L R SE+ + AIG+ +LL P ++ + + +
Sbjct: 63 LILPLALMLGLLLAVARLYRDSEMAVITAIGVGPRRLLRPLLMLVVPVVALVGACSLWLG 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ +I + + + + Q+ N + I P+ +
Sbjct: 123 PWAGRVAEQMIIEANRSVLMAGLEPGRFTQLPNGG---VVYLSSISPDGTQLGRV-FLQR 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
K +++ A + + + + + + ++ F +
Sbjct: 179 QKDDRLEVVSAAGGRMFFEGARQ----RFLELDDGHQVEGPVAGGLDYRLATFARNDVAL 234
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYR--AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + +F + R A+ Q + + PL+ +A L+ + R
Sbjct: 235 PDGAQTRTGDDPELMPTTQLFGDDRPEAQAQLHRRLAPPLIALAFALLTVPLGRSSPRQQ 294
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGK----SGILLPVAAAL---IPVILTISLSILIL 355
+ ++ M Y + T + G +G + P +P L++ I
Sbjct: 295 RYGRMMLA-----LMAYMVGTNLMFIGSGWIANGKIPPALGLWWLTLP-----LLALAIW 344
Query: 356 LQKEDG 361
+ DG
Sbjct: 345 MYARDG 350
>gi|167856193|ref|ZP_02478930.1| hypothetical protein HPS_08256 [Haemophilus parasuis 29755]
gi|167852682|gb|EDS23959.1| hypothetical protein HPS_08256 [Haemophilus parasuis 29755]
Length = 308
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/248 (11%), Positives = 74/248 (29%), Gaps = 13/248 (5%)
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ Q ++P + ++ SE+ + RA G+ L+ + SI V +
Sbjct: 1 MAQLMLPLSLFIALLLTLGRFYAESEITVMRACGVGQSLLVKAALFLSIFTTAVAVYNVF 60
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ +++ + K N +M + I +++ D
Sbjct: 61 WLTPWAINKQSEMLAEAKANPRFAALAAGQFMSAGG----YVLFIDNI--KDNTINDIYV 114
Query: 182 ITIDKKNKII-HRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+++ K A + L + T ++ F +
Sbjct: 115 FQPEQQKKNKPSVVVAKSGELQG----LPNGDQMLNLTNSTRYEGTPQTADFRISHFDNY 170
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNY--RAETQFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + K + ++ + A+ + + + + L + M L+A +S
Sbjct: 171 NAYLGYQDVDSDEKLVQRADFQKLLSETSPEAQAELQWRLALILSVPLMALLAVPMSSVN 230
Query: 299 SRSNQPRI 306
R +
Sbjct: 231 PRQGRFAK 238
>gi|161829745|ref|YP_001596892.1| putative permease [Coxiella burnetii RSA 331]
gi|161761612|gb|ABX77254.1| putative permease [Coxiella burnetii RSA 331]
Length = 370
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/317 (12%), Positives = 102/317 (32%), Gaps = 26/317 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K L T L L +I+ N ++ + + + PL++
Sbjct: 2 IVFRYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAAA-GKITVKAVMEIMSLQAPLLL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + E+VI A G+S Q++ +V + +G+ ++ +
Sbjct: 61 GYLLPLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ +K Q+ + +F A + + +
Sbjct: 121 EPKMQWYRVKILKDAVATASLEKIVPGR-FQLLSSNGQVF-YAGGVNDHHQKMLNVFLAQ 178
Query: 184 IDKKNKIIHR--KDADLA-----IIYNDKVKLKKVVEY-----QYGRIPIDKNSTTLNIP 231
+ AD A + + K Y + + + +
Sbjct: 179 SETAGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLT 238
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + + + + K + +A + + I +PL + L+
Sbjct: 239 SPAMDITERVDAMPTSKLWHLHSK-----------DLKAAAELQWRIAMPLSVWLFALLI 287
Query: 292 ASVSLEFSRSNQPRIIV 308
+S R + ++
Sbjct: 288 VPLSEANPRKGKFAQML 304
>gi|237756215|ref|ZP_04584779.1| putative membrane protein [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691625|gb|EEP60669.1| putative membrane protein [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 336
Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 13/139 (9%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGA-----VLAAT 57
IL +Y K + K L +L+ + L +Q+ LP+++ S +L
Sbjct: 2 KILDKYLIKLFFKNFL-------LLIGLFSLIITSSQLLHLPSFAYSMNIIDFSKLLFLI 54
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
+ I Q++ F + ++V +L +E+ + GIS QLL P + +++ I
Sbjct: 55 DISFIKYQLL-FAFFISWLLVGISLRDKNEIYAVYSAGISKKQLLKPVFIMTVIFVIIAF 113
Query: 118 LVINPIATSGEKIGIDLIQ 136
+ I S + +
Sbjct: 114 VFSTVIVPSANRERYKFLT 132
>gi|171316728|ref|ZP_02905940.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MEX-5]
gi|171098078|gb|EDT42893.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MEX-5]
Length = 363
Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/354 (12%), Positives = 118/354 (33%), Gaps = 23/354 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAAS-GEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V R SE+V+ A G+S+ +L+ P V + + +
Sbjct: 61 AVMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + ++ + FI +K+ P+ ++ +T
Sbjct: 121 WPWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFI--EKMSPDQSKVQNV-FVT 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K+ + + K + + T K+ FQ++ +
Sbjct: 178 STENGKVNIVVS------HTGHTETKDGDRFVVLEDGRRYDGTPGQPNFKIMEFQRYGVK 231
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAET-QFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S + S + + R +F + +PL+ + + ++ +S + R +
Sbjct: 232 ITSTPVTNVPTTNSTPTPDLLRNPTRDNLAEFAWRAGLPLIAINLMVLGIPLSYQNPRRS 291
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKS----------FGKSGILLPVAAALIPVIL 346
+ I + + ++ ++++ G G L + AA++ +I
Sbjct: 292 RT-INLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVG-LHVIVAAIVALIF 343
>gi|225848004|ref|YP_002728167.1| permease, YjgP/YjgQ family [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644087|gb|ACN99137.1| putative permease, YjgP/YjgQ family [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 339
Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/225 (18%), Positives = 81/225 (36%), Gaps = 22/225 (9%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISR-----GAVLAAT 57
IL RY K + K +IL+ + + +Q+ LPN++ S +L
Sbjct: 2 KILHRYILKNFFKK-------FIILIGLFSIVITSSQLLHLPNFAYSMNLIDFLQLLVMI 54
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
+ + QI+ F + ++V ++ +E+ ++G+S +LL P + + L +
Sbjct: 55 DISFLKYQIL-FGFFIAWLLVGVSIRENNEIYAVYSLGVSQKELLKPVFITTTLFTALAL 113
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
+V + + + N + + +I+ I EN
Sbjct: 114 IVSITLIPYANQERSKFLTLKVKNYILESIQPKNFSKINEN-----ISVYTESKENSTLH 168
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
I +K NK + A I + DKV LK +
Sbjct: 169 KI--IIYNKSNKYL--ITAKEGIFFQDKVVLKDGYIHIPSEKSFS 209
>gi|188996313|ref|YP_001930564.1| permease YjgP/YjgQ family protein [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188931380|gb|ACD66010.1| permease YjgP/YjgQ family protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 336
Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 13/139 (9%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGA-----VLAAT 57
IL +Y K + K ++L+ + L +Q+ LP+++ S +L
Sbjct: 2 KILDKYLIKLFFKNF-------ILLIGLFSLIITSSQLLHLPSFAYSMNIIDFSKLLFLI 54
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
+ I Q++ F + ++V +L +E+ + GIS QLL P + +++ I
Sbjct: 55 DISFIKYQLL-FAFFISWLLVGISLRDKNEIYAVYSAGISKKQLLKPVFIMTVIFVIIAF 113
Query: 118 LVINPIATSGEKIGIDLIQ 136
+ I S + +
Sbjct: 114 VFSTVIVPSANRERYKFLT 132
>gi|115352567|ref|YP_774406.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria AMMD]
gi|115282555|gb|ABI88072.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria AMMD]
Length = 363
Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/325 (12%), Positives = 108/325 (33%), Gaps = 12/325 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAAS-GEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V R SE+V+ A G+S+ +L+ P V + L +
Sbjct: 61 AVMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPLILLIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + ++ + FI +K+ P+ ++ +T
Sbjct: 121 WPWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFI--EKMSPDQSKVQNV-FVT 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K+ + + K + + T K+ FQ++ +
Sbjct: 178 STENGKVNIVVS------HTGHTETKDGDRFVVLEDGRRYDGTPGQPNFKIMEFQRYGVK 231
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAET-QFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S + S + + R +F + +PL+ + + ++ +S + R +
Sbjct: 232 ITSTPVTNVPTTNSTPTPDLLRNPTRDNLAEFAWRAGLPLIAINLMVLGIPLSYQNPRRS 291
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKS 327
+ I + + ++ ++++
Sbjct: 292 RT-INLVMAVLIYLTYSNLLNVVQA 315
>gi|89900899|ref|YP_523370.1| permease YjgP/YjgQ [Rhodoferax ferrireducens T118]
gi|89345636|gb|ABD69839.1| permease YjgP/YjgQ [Rhodoferax ferrireducens T118]
Length = 373
Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/321 (14%), Positives = 106/321 (33%), Gaps = 27/321 (8%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
K ++ L+ +V + L Q +++ S ++ V + I+
Sbjct: 7 IRKELARSFGATLIVLATVVMTMTLIRTLGQASR-GSFNPSDVMLVMGYTVLAYMPTILT 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ I + R SE+VI + G + LL P + + + + +
Sbjct: 66 MSLFIAIIATLSRMYRDSEMVIWFSSGKGLAALLGPLFRFAWPVLLVVAALALLVLPWSN 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ L Q++ GD ++ + + + + ++ F+ + + I ++
Sbjct: 126 QRIETLKDQYEKRGDIERIEPGQFQESAGGKRVFFV---EKDATGKQAGNNVFIATNEDG 182
Query: 189 KIIHRKDADLAIIY----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF---- 240
K A I + + L + S +K+ F+++
Sbjct: 183 K-ETITSARRGRIETIGQDRFLMLSNGQRLE---------SVLGTSDLKISEFEEYGIKV 232
Query: 241 -SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
+ + ++ I + + + N AE + I + L + +I +VS
Sbjct: 233 GKDVLSGSNYVPINTQPTLALFKNQTLPNLAELSW--RIGLILAAINFVIIGIAVSGVNP 290
Query: 300 RSNQPRIIVAYGIFSGFMLYT 320
R + +V F+LY
Sbjct: 291 RVGRSANLVFS--LFAFVLYY 309
>gi|182677588|ref|YP_001831734.1| permease-like protein [Beijerinckia indica subsp. indica ATCC 9039]
gi|182633471|gb|ACB94245.1| permease-like protein [Beijerinckia indica subsp. indica ATCC 9039]
Length = 386
Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/310 (12%), Positives = 107/310 (34%), Gaps = 25/310 (8%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--R 58
MP +L Y + + L + + + L LP ++ G + A
Sbjct: 1 MPRLLTLYLTRRIALSVLMIEASLCLPLVMTSL------FSALPPAAVRGGLIWPALLGT 54
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P ++ +P + + F+ + + + ++ +S+W + P +V +++ F
Sbjct: 55 LPTVLYIALPMAVGIAIALEFYRMASEGMIAVLYSLRLSVWSICLPGIVIAMVCVFFGYF 114
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
V + +A + D++ +++ + + + + N + ++ + +
Sbjct: 115 VASFVAPNYVGQMHDVVHVIRNSLNHRMLEPAHFYTFDNGSKTLYFQRWRSSD---VVSG 171
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDK----VKLKK--VVEYQYGRIPIDKNST-TLNIP 231
+ K A +A ++ + L + G I IP
Sbjct: 172 MFIHQFSDEKKEEEIITASIAEFRRNENGVMLVLSDGSIESRPEGATAIHTAHFDEYVIP 231
Query: 232 IKMDGF-----QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
I M G + + F + ++ ++ F + +E +P + ++
Sbjct: 232 IDMQGTGGMPKRNWRGVFEVPALEFFRERPQQADDPRRFSEWTSEAT--KRFAVPFLALS 289
Query: 287 MTLIAASVSL 296
T++A + L
Sbjct: 290 HTILAMGLVL 299
>gi|332851503|ref|ZP_08433500.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013150]
gi|332866797|ref|ZP_08437201.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013113]
gi|332729956|gb|EGJ61287.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013150]
gi|332734405|gb|EGJ65525.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013113]
Length = 341
Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/275 (12%), Positives = 81/275 (29%), Gaps = 14/275 (5%)
Query: 40 MGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIW 99
+ S + R+P + I+P + ++VF L E+ + G++
Sbjct: 12 VAAQGRLDASILFSIIGYRLPEFLTLILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVNRH 71
Query: 100 QLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQ 159
QL + +++ + +++ + G + L +
Sbjct: 72 QLARLLIPMTLVYMVCQSVLMLWMTPWGLREFEKLTTTQAVRTGFDLVR----PREFISS 127
Query: 160 QDIFIGAKKILPENHIWEDFTSITI-DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGR 218
I A + + +D K+ K A A VV+ GR
Sbjct: 128 GPYTIYAGSLSEDRKNLKDIFFYQRAAKEGKPDVMILAKEATRVEVANDTANVVDLVQGR 187
Query: 219 IPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN-----YRAETQ 273
+ ++ E F + + S +F R+E
Sbjct: 188 RYEIFPGQPKYTQAEFQSYRLRLENDKDVKFES--GDVEALSTSKLFSKANDPVVRSELG 245
Query: 274 FYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+ + P ++ +++ ++S R + ++
Sbjct: 246 W--RLFGPFTIIIALMLSVALSEVSPRQGRYYRLI 278
>gi|226329629|ref|ZP_03805147.1| hypothetical protein PROPEN_03539 [Proteus penneri ATCC 35198]
gi|225202815|gb|EEG85169.1| hypothetical protein PROPEN_03539 [Proteus penneri ATCC 35198]
Length = 343
Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 48/336 (14%), Positives = 122/336 (36%), Gaps = 19/336 (5%)
Query: 25 MILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNR 84
M++ F L EI E N + L +P + Q I+P + ++ + L
Sbjct: 1 MLIFFSQKLVEILGAAVE-GNIPTNLVVSLLWLGIPEMAQLILPLSLFLGLLMTYSKLYV 59
Query: 85 TSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDK 144
SE+ + A GI L+ ++ S+L + + +++ K N
Sbjct: 60 ESEITVMNACGIGKKALVQAALLLSLLTSALAAGNVIWLIPWSSVHQEQVLEDAKANPSL 119
Query: 145 QKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK-KNKIIHRKDADLA---I 200
+ + +++ + + + + ++D + +++ AD
Sbjct: 120 AALMEGQFKM--SSDRNMVLYLGSV--KGNQFQDVFLAQLRPTQDQRPSVVVADKGYTKE 175
Query: 201 IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSN 260
+ N ++V G T + ++ F + R ++
Sbjct: 176 LPNG----NQIVVLSEG---TRYEGTAVLRDFRITDFNDYQAVIGHRESTINRNRVEQKT 228
Query: 261 KSNIFHNYRAE--TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFML 318
S ++H+ E +F++ + + +V M ++ +S R + + + + +
Sbjct: 229 MSELWHSNETESIAEFHWRLTLIFSVVIMAVMVVPLSEVNPRQGRV-LSMLPAMLLYLVF 287
Query: 319 YTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + + S G+ G + P+ A + ++L+IL+
Sbjct: 288 FLLQSSLHSNGEKGKVDPLIAMWSVNGVYLALAILL 323
>gi|172061426|ref|YP_001809078.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MC40-6]
gi|171993943|gb|ACB64862.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MC40-6]
Length = 363
Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 118/354 (33%), Gaps = 23/354 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAAS-GEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V R SE+V+ A G+S+ +L+ P V + L +
Sbjct: 61 AVMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPLILLIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + ++ + FI +K+ P+ ++ +T
Sbjct: 121 WPWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFI--EKMSPDQSKVQNV-FVT 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K+ + + K + + T K+ FQ++ +
Sbjct: 178 STENGKVNIVVS------HTGHTETKDGDRFVVLEDGRRYDGTPGQPNFKIMEFQRYGVK 231
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAET-QFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S + S + + R +F + +PL+ + + ++ +S + R +
Sbjct: 232 ITSTPVTNVPTTNSTPTPDLLRNPTRDNLAEFAWRAGLPLIAINLMVLGIPLSYQNPRRS 291
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKS----------FGKSGILLPVAAALIPVIL 346
+ I + + ++ ++++ G G L + AA++ +I
Sbjct: 292 RT-INLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVG-LHVIVAAIVALIF 343
>gi|84516313|ref|ZP_01003673.1| Predicted permease [Loktanella vestfoldensis SKA53]
gi|84510009|gb|EAQ06466.1| Predicted permease [Loktanella vestfoldensis SKA53]
Length = 369
Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/309 (14%), Positives = 104/309 (33%), Gaps = 18/309 (5%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
L F ++LV+ I+ + S A +P +I+ +P
Sbjct: 5 LIMLCGFFGLVLVLVYSINRAVLLFDQLIADGQSAGVFVEFTALTLPSVIRLALPLAAFA 64
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
I V + SELV+ +A G S++++ P + +++ + L+++ +
Sbjct: 65 AAIYVTNRMTNDSELVVVQATGYSLFRIARPVLYFGLIVALLMSLLMHFLVPRSAAQLAL 124
Query: 134 LIQQWKDNGDKQK----------SDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ N + + + +++ +P ++F L + ED + T
Sbjct: 125 RQTEIARNVTARLLTPGTFTEPIAGVTFYIRDLSPDGELF---DLFLSDTRGIEDQVTYT 181
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ + ++ L +I L+ + + + N+ + + +
Sbjct: 182 ASRAFLVREAQETQLVMIDGMVQTLRLADQRLF---TTRFAEFSYNVGGLLAPVTQAGRR 238
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL--EFSRS 301
+ S +E++ R + L+ + LI + + +SR
Sbjct: 239 ASHLSTWELLHPTPALVAETGSSAARMIADGHDRFSQSLLGMVAALIGFATLMVGSYSRF 298
Query: 302 NQPRIIVAY 310
R IVA
Sbjct: 299 GVWRQIVAA 307
>gi|163782091|ref|ZP_02177090.1| hypothetical protein HG1285_18199 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882623|gb|EDP76128.1| hypothetical protein HG1285_18199 [Hydrogenivirga sp. 128-5-R1-1]
Length = 357
Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/270 (11%), Positives = 81/270 (30%), Gaps = 6/270 (2%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I RY +LK ++ L+ + L + ++ G +PL
Sbjct: 2 NIFDRYLLLNFLKVFSAISFVSVGLIVLYSLTDFL---LGFKETNLEVGLKYTLYLIPLG 58
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ + + IV+F ++ GIS + FV +++L + +
Sbjct: 59 FYILSSLLVNIALIVLFRRFFSKGVDFTVQSFGISPLRFSAVFVGFTLVLSSLFLFLNES 118
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
K + + +K + + W ++ + + + +
Sbjct: 119 FLPGLFKRVWYIEKTYKKKQEIGRLVERLWFVKKTSFGKYYVYIGSLDVTSGKFAGLFML 178
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKN--STTLNIPIKMDGFQKF 240
+ + K+ + + + + + Y +G + +L+ I + F
Sbjct: 179 RVSSEGKVKEVVEGKSGRWSGNVIYVDRGSAYNFGEGYFVRELKEFSLSAEIGISEIGLF 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRA 270
+E+ +I K + R
Sbjct: 239 AEKIQHVKSSSLINLYLKGGKLGL-DTDRY 267
>gi|218132104|ref|ZP_03460908.1| hypothetical protein BACEGG_03732 [Bacteroides eggerthii DSM 20697]
gi|217985754|gb|EEC52095.1| hypothetical protein BACEGG_03732 [Bacteroides eggerthii DSM 20697]
Length = 605
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 3/125 (2%)
Query: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ 137
F N EL+ +A GIS+ +++ P + L+ + N I + L+
Sbjct: 49 TFGNFGERFELLAMKAAGISLLKIMRPLIFFISLICCVSFYFQNVIGPKAQTKLWTLLVS 108
Query: 138 WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDAD 197
K + + + + K E + D +K + +D
Sbjct: 109 MKQKSPEVDIPEGVFYDEIDGYN---LYVKHKNRETGMLYDVLIYNFEKGFENAQIIKSD 165
Query: 198 LAIIY 202
+
Sbjct: 166 SGRLE 170
Score = 37.5 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
SF+ R T ++ + + L + I A + R + V +
Sbjct: 323 WSFKSFNISQTETSLRRHMTSWHEKLTLSLACLIFFFIGAPLG-GIIRKGGLGMPVVVSV 381
Query: 313 F 313
Sbjct: 382 L 382
>gi|33519519|ref|NP_878351.1| putative inner membrane protein [Candidatus Blochmannia floridanus]
gi|33517182|emb|CAD83564.1| putative inner membrane protein; predicted permease [Candidatus
Blochmannia floridanus]
Length = 370
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 54/359 (15%), Positives = 136/359 (37%), Gaps = 18/359 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL +Y K K L L+ ++ F ++ + +P Y + +P +
Sbjct: 2 ILIKYIMKEICKNQLIILILLLLACFCQKSIKVLSLSNNIPIY---WIFLYLFLSIPDLG 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ IIPF + ++ + L+ +E++ + ++ + L+ + S ++ I +++ + +
Sbjct: 59 KLIIPFSLFLSVLISCYRLHMHNEILAMYSCAVNKYVLIQSICMYSTVIAILSLINLAYL 118
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
A E+ ++ + K N + + + + +FI K NH++
Sbjct: 119 APHCEQYKENIFFKMKKNTYFIELIEKKFYLLFDEHLVLFIDNIKNGMLNHVFILKRVQN 178
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
IDK + AD I+ + +++ Q G N+ L IP + F ++
Sbjct: 179 IDKN--VFSIITADQGSIHYNFNDKSQLIILQSGMYYEIHNTQLLCIPRFVTYFNQYRTL 236
Query: 244 FASRSFYEIIKKMSFS------NKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ Y+ ++ ++ S N+ I + + + + + + + M +IA V +
Sbjct: 237 VHDK--YQFLRDVNKSVKHMNINQLLISSELESYIELNWRLTLFISVFIMPMIALFVMMN 294
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+ + Y + ++ + + + I + + + +LL
Sbjct: 295 IA--YGYLSNFLLAVVLYVFFYMLHIMLYTCSVLNYMNIIILMWIINCIYLII---LLL 348
>gi|15595152|ref|NP_212941.1| hypothetical protein BB0807 [Borrelia burgdorferi B31]
gi|221217627|ref|ZP_03589096.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 72a]
gi|225551663|ref|ZP_03772607.1| conserved hypothetical integral membrane protein [Borrelia sp. SV1]
gi|226320854|ref|ZP_03796406.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 29805]
gi|2688742|gb|AAC67148.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi B31]
gi|221192573|gb|EEE18791.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 72a]
gi|225371690|gb|EEH01116.1| conserved hypothetical integral membrane protein [Borrelia sp. SV1]
gi|226233720|gb|EEH32449.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 29805]
Length = 429
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 1/134 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + K L L + F+ + + + + + +P++I
Sbjct: 11 YIIAEFFKYFLITFLFFFFVFFINQILFFMRILLQN-YVPFFKAFIFIIYSLPMVIALSP 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF +L+ I+ +E++ R+IGISI+ LL PF I++ + + + + G
Sbjct: 70 PFASLISVILTIHKFKLHNEILAFRSIGISIFDLLVPFFKLGIVIAFVSFISNDILLPLG 129
Query: 128 EKIGIDLIQQWKDN 141
+ + + K+
Sbjct: 130 SIGRLKIFNEIKEE 143
Score = 41.8 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 40/101 (39%)
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ ++S + +FY I +PL ++ +A S+ + +R + + I
Sbjct: 326 YQDRSMKQNLALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISIIVCVF 385
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + K + P+ ++P ++ I ++ L+
Sbjct: 386 YWVMFIGGKVYTVQYAPSPIIVTILPNLILIIAGAILFLRL 426
>gi|195941983|ref|ZP_03087365.1| hypothetical protein Bbur8_03799 [Borrelia burgdorferi 80a]
Length = 429
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 1/134 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + K L L + F+ + + + + + +P++I
Sbjct: 11 YIIAEFFKYFLITFLFFFFVFFINQILFFMRILLQN-YVPFFKAFIFIIYSLPMVIALSP 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF +L+ I+ +E++ R+IGISI+ LL PF I++ + + + + G
Sbjct: 70 PFASLISVILTIHKFKLHNEILAFRSIGISIFDLLVPFFKLGIVIAFVSFISNDILLPLG 129
Query: 128 EKIGIDLIQQWKDN 141
+ + + K+
Sbjct: 130 SIGRLKIFNEIKEE 143
Score = 40.6 bits (94), Expect = 0.36, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 40/101 (39%)
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ ++S + +FY I +PL ++ +A S+ + +R + + I
Sbjct: 326 YQDRSMKQNLALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISIIVCVF 385
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + K + P+ ++P ++ I ++ L+
Sbjct: 386 YWVMFIGGKVYTVQYAPNPIIVTILPNLILIIAGAILFLRL 426
>gi|216264700|ref|ZP_03436692.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 156a]
gi|223889298|ref|ZP_03623885.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 64b]
gi|224533066|ref|ZP_03673671.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi WI91-23]
gi|225549397|ref|ZP_03770369.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 94a]
gi|225550295|ref|ZP_03771254.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 118a]
gi|215981173|gb|EEC21980.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 156a]
gi|223885219|gb|EEF56322.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 64b]
gi|224512002|gb|EEF82398.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi WI91-23]
gi|225369163|gb|EEG98617.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 118a]
gi|225370025|gb|EEG99466.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi 94a]
gi|312147984|gb|ADQ30643.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi JD1]
gi|312149484|gb|ADQ29555.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi N40]
Length = 429
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 1/134 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + K L L + F+ + + + + + +P++I
Sbjct: 11 YIIAEFFKYFLITFLFFFFVFFINQILFFMRILLQN-YVPFFKAFIFIIYSLPMVIALSP 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF +L+ I+ +E++ R+IGISI+ LL PF I++ + + + + G
Sbjct: 70 PFASLISVILTIHKFKLHNEILAFRSIGISIFDLLVPFFKLGIVIAFVSFISNDILLPLG 129
Query: 128 EKIGIDLIQQWKDN 141
+ + + K+
Sbjct: 130 SIGRLKIFNEIKEE 143
Score = 41.8 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 40/101 (39%)
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ ++S + +FY I +PL ++ +A S+ + +R + + I
Sbjct: 326 YQDRSMKQNLALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISIIVCVF 385
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + K + P+ ++P ++ I ++ L+
Sbjct: 386 YWVMFIGGKVYTVQYAPSPIIVTILPNLILIIAGAILFLRL 426
>gi|170697653|ref|ZP_02888741.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria IOP40-10]
gi|170137401|gb|EDT05641.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria IOP40-10]
Length = 363
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 45/354 (12%), Positives = 118/354 (33%), Gaps = 23/354 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAAS-GEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V R SE+V+ A G+S+ +L+ P V + + +
Sbjct: 61 AVMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + ++ + FI +K+ P+ ++ +T
Sbjct: 121 WPWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFI--EKMAPDQSKVQNV-FVT 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K+ + + K + + T K+ FQ++ +
Sbjct: 178 STENGKVNIVVS------HTGHTETKDGDRFVVLEDGRRYDGTPGQPNFKIMEFQRYGVK 231
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAET-QFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S + S + + R +F + +PL+ + + ++ +S + R +
Sbjct: 232 ITSTPVTNVPTTNSTPTPDLLRNPTRDNLAEFAWRAGLPLIAINLMVLGIPLSYQNPRRS 291
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKS----------FGKSGILLPVAAALIPVIL 346
+ I + + ++ ++++ G G L + AA++ +I
Sbjct: 292 RT-INLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVG-LHVIVAAIVALIF 343
>gi|229587242|ref|YP_002845743.1| Putative permease [Rickettsia africae ESF-5]
gi|228022292|gb|ACP54000.1| Putative permease [Rickettsia africae ESF-5]
Length = 369
Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 52/366 (14%), Positives = 138/366 (37%), Gaps = 20/366 (5%)
Query: 4 ILWR-YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L+R YF K L + +V++ + ++ + + L +P +
Sbjct: 11 LLYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLFDK--GIKVMDFFSLIVLVLPTL 68
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++P I ++ I ++ NL +L+I + G++ QL P + ++++ + + +
Sbjct: 69 LFILLPVIMVITVIYIYNNLKVERQLIILQTSGVNNVQLALPALYVALIVMLLAYYISSN 128
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + K+N S +I + +DI + K +I
Sbjct: 129 ILPLSHINLKSRLNFIKNN---YISSMIEEKTFNKVTKDITVFIDKKSA-GNIMNGVIIF 184
Query: 183 TIDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGR----IPIDKNSTTLNI-PIK 233
+ A + + +L K + +Y + +S + +
Sbjct: 185 DNRNADNP-SVVFAGSGTLNIYDNSPIFELNKGIRQEYDVNGNLTQLTFDSLIIKLQNDN 243
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
Q+ + +Y I + ++ + I + + + I+ PL + +A +
Sbjct: 244 PLVSQRTKHNKEANEYY-ISELLAPPHDLAITKKIKLIAEAHQRIIWPLYNFVLPFVALA 302
Query: 294 VSLEFSRSNQPRII-VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
V L + S + + V + + ++ +I I+++F L + A +++ +++ +
Sbjct: 303 VFLRYPYSKKTTFMPVLFSALTVLLVTSIHFILQNFASKN-LDFIFACYFNLVIALTIGL 361
Query: 353 LILLQK 358
+ ++K
Sbjct: 362 YLFVRK 367
>gi|212212731|ref|YP_002303667.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuG_Q212]
gi|212011141|gb|ACJ18522.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuG_Q212]
Length = 372
Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 102/320 (31%), Gaps = 26/320 (8%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I++RY K L T L L +I+ N ++ + + +VP
Sbjct: 1 MSVIVFRYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAAA-GKITVKAVMEIMSLQVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L++ ++P + ++ + E+VI A G+S Q++ +V + +G+ ++
Sbjct: 60 LLLGYLLPLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLM 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + +++ +K Q + +F A + + +
Sbjct: 120 LSVEPKMQWYRVKILKDAVATASLEKIVPGR-FQPLSSNGQVF-YAGGVNDHHQKMLNVF 177
Query: 181 SITIDKKNKIIHR--KDADLA-----IIYNDKVKLKKVVEY-----QYGRIPIDKNSTTL 228
+ AD A + + K Y + + +
Sbjct: 178 LAQSETAGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGI 237
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ + + + + K + +A + + I +PL +
Sbjct: 238 RLTSPAMDITGRVDAMPTSKLWHLHSK-----------DLKAAAELQWRIAMPLSVWLFA 286
Query: 289 LIAASVSLEFSRSNQPRIIV 308
L+ +S R + ++
Sbjct: 287 LLIVPLSEANPRKGKFAQML 306
>gi|332828499|gb|EGK01199.1| hypothetical protein HMPREF9455_02391 [Dysgonomonas gadei ATCC
BAA-286]
Length = 684
Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 2/154 (1%)
Query: 202 YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNK 261
D +K++K Q P + +L D + AS + + + K
Sbjct: 320 EADSLKVEKPKALQKKEQPAKIDFDSLLNSYSRDEMAQHLMSAASEAENSRYNMLESTQK 379
Query: 262 SNIFHNYR-AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYT 320
+ + N R E + + + + I A + R + V + + Y
Sbjct: 380 AGLQKNIRFHEVERHRKFTLSFACLIFFFIGAPLGA-IIRKGGLGMPVVVSVALFIVYYI 438
Query: 321 IITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
I I + G+ + L + +
Sbjct: 439 IDNIGYKMARDGVWEAWQGMWLSSFALFPLGVFL 472
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 35/206 (16%), Positives = 68/206 (33%), Gaps = 8/206 (3%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP---NYSISRGAVLAAT 57
M I Y F ++T L ++ I L + + E IS A L
Sbjct: 1 MLKIKRLYTF--VIQTFLPVFAMTFVICLFIVLMQFLWRYVEDLVGKGLDISVLAELFLY 58
Query: 58 RVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTV 117
+I +P L+ +++ F NL EL+ +A G+S+ + + P ++ + I
Sbjct: 59 AAFQLIPMALPLSLLLASLMAFGNLGERLELLSIKASGVSLLKAMKPLIILVAFISIGAF 118
Query: 118 LVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWE 177
N + L+ K + + + + + KK E +
Sbjct: 119 FFQNEAMPRIQVKLRALLWSIKQKSPELDIPEGSFY---SDIPNYNLYVKKKNRETKMLH 175
Query: 178 DFTSITIDKKNKIIHRKDADLAIIYN 203
+ K + D A++
Sbjct: 176 EVMIYDTSKGFDNMAVIVCDSALMRG 201
>gi|212218293|ref|YP_002305080.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuK_Q154]
gi|212012555|gb|ACJ19935.1| hypothetical membrane spanning protein [Coxiella burnetii
CbuK_Q154]
Length = 372
Score = 53.7 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 102/320 (31%), Gaps = 26/320 (8%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I++RY K L T L L +I+ N ++ + + +VP
Sbjct: 1 MSVIVFRYLCKEILGTLLATTLILLIIFMTNQFIHYLNDAAA-GKITVKAVMEIMSLQVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L++ ++P + ++ + E+VI A G+S Q++ +V + +G+ ++
Sbjct: 60 LLLGYLLPLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLM 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + +++ +K Q + +F A + + +
Sbjct: 120 LSVEPKMQWYRVKILKDAVATASLEKIVPGR-FQPLSSNGQVF-YAGGVNDHHQKMLNVF 177
Query: 181 SITIDKKNKIIHR--KDADLA-----IIYNDKVKLKKVVEY-----QYGRIPIDKNSTTL 228
+ AD A + + K Y + + +
Sbjct: 178 LAQSETAGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGI 237
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ + + + + K + +A + + I +PL +
Sbjct: 238 RLTSPAMDITGRVDAMPTSKLWHLHSK-----------DLKAAAELQWRIAMPLSVWLFA 286
Query: 289 LIAASVSLEFSRSNQPRIIV 308
L+ +S R + ++
Sbjct: 287 LLIVPLSEANPRKGKFAQML 306
>gi|289803331|ref|ZP_06533960.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhi str. AG3]
Length = 258
Score = 53.7 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/186 (14%), Positives = 57/186 (30%), Gaps = 16/186 (8%)
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
+ L SE+ + A G+S L+ +V ++ GI + + K +++
Sbjct: 67 MTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAGPWSSKHQDEVLA 126
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKII-HRKD 195
+ K N + + + + + + D I K
Sbjct: 127 EAKANPGMAALAQGQF--QQATNGSSVLFIESV--DGSDFHDVFLAQIRPKGNARPSVVV 182
Query: 196 ADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF------SEQF 244
AD + + V L K ++ + D T + G Q ++Q
Sbjct: 183 ADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTDQM 242
Query: 245 ASRSFY 250
R+ +
Sbjct: 243 DMRTLW 248
>gi|71083418|ref|YP_266137.1| permease YjgP/YjgQ family protein [Candidatus Pelagibacter ubique
HTCC1062]
gi|71062531|gb|AAZ21534.1| Predicted permease YjgP/YjgQ family protein [Candidatus
Pelagibacter ubique HTCC1062]
Length = 378
Score = 53.7 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 1/137 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I+++ K + L + I+++V+ + + E + P
Sbjct: 1 MKKIVYKKLSKDCVNFFLLVVFTISIIIWVLQAVNYLDFVIE-DGHGFLVYFKYTLLSFP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
II +I PF + + +ELVI GI +N F+ S+ + ++L+
Sbjct: 60 KIISRIFPFAIFLAFSYILLKYENKNELVIFWNFGIKKINFINFFIKFSLWFVLISLLLN 119
Query: 121 NPIATSGEKIGIDLIQQ 137
I + I+
Sbjct: 120 AVITPFAQDKARSFIRS 136
>gi|206561015|ref|YP_002231780.1| putative permease [Burkholderia cenocepacia J2315]
gi|198037057|emb|CAR52978.1| putative permease protein [Burkholderia cenocepacia J2315]
Length = 364
Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 42/362 (11%), Positives = 114/362 (31%), Gaps = 38/362 (10%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAAS-GEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V R SE+V+ A G+S+ +L+ P V + + +
Sbjct: 61 AVMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFAAPIILLITFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI +K+ P+ ++ +T
Sbjct: 121 WPWSNQQSKMIKARFQQRDEISLLAPGQFRESAANHRVFFI--EKMSPDQSKVQNV-FVT 177
Query: 184 IDKKNKIIHRK----DADLAIIYNDKVKLKKVVEY--QYGRIPI---DKNSTTLNIPIKM 234
+ K+ + + + V L+ Y G+ + + I K
Sbjct: 178 STENGKVNVVVSQTGHTETSKDGDRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSKP 237
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + + + + + + +PL+ + + ++ +
Sbjct: 238 VTNVQTTNSTPTPDLLRNPTRDNLAEFAWRAG-------------LPLIAINLMVLGIPL 284
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS----------FGKSGILLPVAAALIPV 344
S + R ++ I + + ++ ++++ G G L + AA++
Sbjct: 285 SYQNPRRSRT-INLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVG-LHVIVAAIVAF 342
Query: 345 IL 346
I
Sbjct: 343 IF 344
>gi|51599059|ref|YP_073247.1| hypothetical protein BG0833 [Borrelia garinii PBi]
gi|51573630|gb|AAU07655.1| conserved hypothetical integral membrane protein [Borrelia garinii
PBi]
Length = 429
Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 54/134 (40%), Gaps = 1/134 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + K L L + F+ + + + + + +P++I
Sbjct: 11 YIISEFFKYFLITFLFFFFVFFINQILFFMRILLQN-YVPFLKAFIFIIYSLPMVIALSP 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF +L+ I+ +E++ R+IGISI+ L+ PF I++ + + + + G
Sbjct: 70 PFASLISVILTIHKFKINNEILAFRSIGISIFDLIFPFFKLGIVIVFISFISNDILLPLG 129
Query: 128 EKIGIDLIQQWKDN 141
+ + + K+
Sbjct: 130 SIGRLKIFNEIKEE 143
Score = 40.6 bits (94), Expect = 0.41, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 35/89 (39%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+FY I +PL ++ +A S+ + +R + + I + + K +
Sbjct: 338 FNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISIIICVFYWVMFIGGKVYT 397
Query: 330 KSGILLPVAAALIPVILTISLSILILLQK 358
P+ ++P ++ I ++ L+
Sbjct: 398 VQYAPNPIIITILPNLILIIAGAILFLRL 426
>gi|325527102|gb|EGD04517.1| YjgP/YjgQ like transporter [Burkholderia sp. TJI49]
Length = 363
Score = 53.3 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/325 (11%), Positives = 106/325 (32%), Gaps = 12/325 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAAS-GEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V R SE+V+ A G+S+ +L+ P V + + +
Sbjct: 61 AVMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI +K+ P+ ++ +T
Sbjct: 121 WPWSNQQSKMIKARFQQRDEISLLAPGQFRESATNHRVFFI--EKMTPDQSKVQNV-FVT 177
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQ 243
+ K+ + + + + T K+ FQ++ +
Sbjct: 178 STENGKVNVVVS------QTGHTETRDGDRFVVLENGRRYDGTPGQPNFKIMEFQRYGVK 231
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAET-QFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
S + S + + R +F + +PL+ + + ++ ++ + R +
Sbjct: 232 ITSTPVVNVPTTNSTPTLDLLRNPTRDNLAEFAWRAGLPLIAINLMVLGIPLAYQNPRRS 291
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKS 327
+ I + + ++ ++++
Sbjct: 292 RT-INLVMAVLIYLTYSNLLNVVQA 315
>gi|219684946|ref|ZP_03539887.1| conserved hypothetical integral membrane protein [Borrelia garinii
PBr]
gi|219671684|gb|EED28740.1| conserved hypothetical integral membrane protein [Borrelia garinii
PBr]
Length = 429
Score = 53.3 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 1/134 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + K L L + F+ + + + + + +P++I
Sbjct: 11 YIITEFFKYFLITFLFFFFVFFINQILFFMRILLQN-YVPFLKAFIFIIYSLPMVIALSP 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF +L+ I+ +E++ R+IGISI+ L+ PF +++ + + + + G
Sbjct: 70 PFASLISVILTIHKFKINNEILAFRSIGISIFDLIFPFFKLGVVIVFISFISNDILLPLG 129
Query: 128 EKIGIDLIQQWKDN 141
+ + + K+
Sbjct: 130 SIGRLKIFNEIKEE 143
Score = 41.4 bits (96), Expect = 0.24, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 35/89 (39%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+FY I +PL ++ +A S+ + +R + + I + + K +
Sbjct: 338 FNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISIIICVFYWVMFIGGKVYT 397
Query: 330 KSGILLPVAAALIPVILTISLSILILLQK 358
P+ ++P ++ I ++ L+
Sbjct: 398 VQYAPNPIIVTILPNLILIIAGAILFLRL 426
>gi|167761789|ref|ZP_02433916.1| hypothetical protein BACSTE_00129 [Bacteroides stercoris ATCC
43183]
gi|167700295|gb|EDS16874.1| hypothetical protein BACSTE_00129 [Bacteroides stercoris ATCC
43183]
Length = 605
Score = 53.3 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 40/125 (32%), Gaps = 3/125 (2%)
Query: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ 137
F N EL+ +A GIS+ +++ P ++ ++ + N I + L+
Sbjct: 49 TFGNFGERFELLAMKAAGISLLKIMRPLIIFISIICCVSFYFQNVIGPKAQTKLWTLLVS 108
Query: 138 WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDAD 197
K + + + + K + + D +K + +D
Sbjct: 109 MKQKSPEVDIPEGVFYDEIDGYN---LYVKHKNRKTGMLYDVLIYNFEKGFENAQIIKSD 165
Query: 198 LAIIY 202
+
Sbjct: 166 SGRLE 170
Score = 36.8 bits (84), Expect = 5.0, Method: Composition-based stats.
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIF 313
R T ++ + + L + I A + R + V +
Sbjct: 336 SLRRHMTSWHEKLTLSLACLIFFFIGAPLG-GIIRKGGLGMPVVVSVL 382
>gi|224533436|ref|ZP_03674029.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi CA-11.2a]
gi|224513398|gb|EEF83756.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi CA-11.2a]
Length = 390
Score = 53.3 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 43/96 (44%)
Query: 46 YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF 105
+ + +P++I PF +L+ I+ +E++ R+IGISI+ LL PF
Sbjct: 9 VPFFKAFIFIIYSLPMVIALSPPFASLISVILTIHKFKLHNEILAFRSIGISIFDLLVPF 68
Query: 106 VVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN 141
I++ + + + + G + + + K+
Sbjct: 69 FKLGIVIAFVSFISNDILLPLGSIGRLKIFNEIKEE 104
Score = 41.8 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 40/101 (39%)
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ ++S + +FY I +PL ++ +A S+ + +R + + I
Sbjct: 287 YQDRSMKQNLALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISIIVCVF 346
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + K + P+ ++P ++ I ++ L+
Sbjct: 347 YWVMFIGGKVYTVQYAPSPIIVTILPNLILIIAGAILFLRL 387
>gi|224418451|ref|ZP_03656457.1| hypothetical protein HcanM9_04150 [Helicobacter canadensis MIT
98-5491]
gi|313141983|ref|ZP_07804176.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313131014|gb|EFR48631.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
Length = 341
Score = 53.3 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 50/350 (14%), Positives = 119/350 (34%), Gaps = 26/350 (7%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + + + V+ I + + S L +PL+I +I
Sbjct: 6 YLFHSFAQIFFPIFFVLFFIASVVIFIRIAG-VTFVVQISFFELLSLYFYTLPLMIFFVI 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P V + L+ EL + A+G++ +++ F + L+ ++ +
Sbjct: 65 PLSFFVACTLSLSRLSFDYELPVLFALGMNPSKIIKIFFPIAALVSFSLFILSLVLTPLS 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
+ +++ K++ + D + +K E+ +E+ ++ K+
Sbjct: 125 DTAYRQFLEERKNSININLQAGEF----GQKLGDWLVYVQKS-KEDSSYENIVLLSFAKE 179
Query: 188 NKIIHRKDADL-AIIYNDKVKLKKVVEYQYGRIPIDK-NSTTLNIPIKMDGFQKFSEQFA 245
+I +A + + + L+K Y+ ++K TL I + +
Sbjct: 180 GGMIFSDNAKIVNQMGVMEAILEKGSIYRPKEDFVEKILFDTLIIRSSITAIDEV--DLG 237
Query: 246 SRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM-LVAMTLIAASVSLEFSRSNQP 304
++ K +F R + + + PL+ L L+ + R +
Sbjct: 238 VIGYW----KRAFYENDRQKKTLRNLSMYVMMSCFPLVSLFFFPLLGV----KNPRYQKN 289
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + + Y ++ + S LP+ I I+ + L L+
Sbjct: 290 YT-ILQAMGVIGIFYALMYLFAS------YLPLLGMFIFPIIWLLLGYLL 332
>gi|218249949|ref|YP_002375305.1| hypothetical protein BbuZS7_0837 [Borrelia burgdorferi ZS7]
gi|226321272|ref|ZP_03796800.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi Bol26]
gi|218165137|gb|ACK75198.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi ZS7]
gi|226233304|gb|EEH32055.1| conserved hypothetical integral membrane protein [Borrelia
burgdorferi Bol26]
Length = 429
Score = 53.3 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 54/134 (40%), Gaps = 1/134 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + K L L + F+ + + + + + +P++I
Sbjct: 11 YIIAEFFKYFLITFLFFFFVFFINQILFFMRILLQN-YVPFFKAFIFIIYSLPMVIALSP 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
PF +L+ I+ +E++ R+IGISI+ L+ PF I++ + + + + G
Sbjct: 70 PFASLISVILTIHKFKLHNEILAFRSIGISIFDLIVPFFKLGIVIAFVSFISNDILLPLG 129
Query: 128 EKIGIDLIQQWKDN 141
+ + + K+
Sbjct: 130 SIGRLKIFNEIKEE 143
Score = 41.8 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 40/101 (39%)
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ ++S + +FY I +PL ++ +A S+ + +R + + I
Sbjct: 326 YQDRSMKQNLALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISIIVCVF 385
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + K + P+ ++P ++ I ++ L+
Sbjct: 386 YWVMFIGGKVYTVQYAPSPIIVTILPNLILIIAGAILFLRL 426
>gi|157965014|ref|YP_001499838.1| putative permease [Rickettsia massiliae MTU5]
gi|157844790|gb|ABV85291.1| Putative permease [Rickettsia massiliae MTU5]
Length = 370
Score = 53.3 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 55/366 (15%), Positives = 137/366 (37%), Gaps = 20/366 (5%)
Query: 4 ILWR-YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L+R YF K L + +V++ + ++ + + L +P +
Sbjct: 12 LLYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLFDK--GIKVMDFFSLIVLVLPTL 69
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++P IT++ I ++ NL +L+I +A G+ QL P + ++++ + + +
Sbjct: 70 LFILLPVITVITVIYIYNNLKVERQLIILQASGVDNVQLALPALYVALIVMLLAYYISST 129
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + K+N S +I + +DI + K +I
Sbjct: 130 ILPLSHINLKSRLNFIKNN---YISSMIEEKTFNKVTKDITVFIDKKSA-GNIMNGVIIF 185
Query: 183 TIDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD--- 235
+ A + + +L K +Y T ++ IK+
Sbjct: 186 DNRNADNP-SVVFAGSGTLNIYDNSPIFELNKGRRQEYDVNGNLTQLTFDSLMIKLQNDN 244
Query: 236 --GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
Q+ + +Y I + ++ + I + + + I+ PL + + +
Sbjct: 245 PLVSQRTKHNKEANEYY-ISELLAPPHDLAITKKIKLIAEAHQRIIWPLYNFVLPFVTLA 303
Query: 294 VSLEFSRSNQPRII-VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
V L + S + + V + ++ +I I+++F L + A +++ +++ +
Sbjct: 304 VFLRYPYSKKTTFMPVLFSALIVLLVTSIHFILQNFASKN-LDFIFACYFNLVIALTIGL 362
Query: 353 LILLQK 358
+ ++K
Sbjct: 363 YLFVRK 368
>gi|152998004|ref|YP_001342839.1| permease YjgP/YjgQ family protein [Marinomonas sp. MWYL1]
gi|150838928|gb|ABR72904.1| permease YjgP/YjgQ family protein [Marinomonas sp. MWYL1]
Length = 371
Score = 53.3 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 52/368 (14%), Positives = 123/368 (33%), Gaps = 34/368 (9%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M L+RY K L +T L ++++ + ++ + + V+ VP
Sbjct: 1 MTLRLFRYLAKEVLVSTAGVTLILLLVILSGRFSFYLGRIAD-GKMTFEFLFVILGYHVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+Q I+P + ++ F L +E+ + + GIS +L + + L+G+ + +
Sbjct: 60 SFVQMILPLAFFLALLLSFGRLYIENEMSVLFSSGISKVKLAGYTLGIAFLVGLVSASIN 119
Query: 121 NPIATSGEKIGIDLIQQW------------KDNGDKQKSDIIPWMQISNPQQDIFIGAKK 168
+A E + Q + G Q++ I IF+
Sbjct: 120 FWLAPYSEYKAAEASQAQNQLSAFDFLIPGRFEGSGQRTTYIDSFTKEGWMNQIFL---- 175
Query: 169 ILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL 228
+ T + I R ++ + + K Y+ + T
Sbjct: 176 SDVVRKKDTNIPIQTFAANAEQI-RISSED---NQNYLVFKNGTRYEGKPGTANYRITQF 231
Query: 229 NI-PIKMDGFQK-FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVA 286
+ I+M+ + + +++ +I K + + I + L++
Sbjct: 232 DTYAIRMESKDESIIDDPYTQNTLSLINSDKLLEK----------VELQWRISLVLIIPI 281
Query: 287 MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL 346
+ +I S+S R + + I + ++ ++ + G L +
Sbjct: 282 LAIIGLSLSQVNPRQGRFFKM-LPAILLMILYIALLIWGRTSLEKGKLPIQLGLWWIHGI 340
Query: 347 TISLSILI 354
I ++ L+
Sbjct: 341 FILIAALL 348
>gi|34498370|ref|NP_902585.1| hypothetical protein CV_2915 [Chromobacterium violaceum ATCC 12472]
gi|34104224|gb|AAQ60583.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 368
Score = 53.3 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/317 (11%), Positives = 97/317 (30%), Gaps = 20/317 (6%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
+ T L + + ++ + + E + + A++ + ++
Sbjct: 7 LTRELTLTALGVFVVLLAIIVSTQAINLLGRAAEGQIANEAVTALIGFWTL-GFFPVLMI 65
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
V +VV R E+V+ + G+S+ + P + ++ L I V + +
Sbjct: 66 LTVFVSVLVVLTRTWRDHEMVVWLSAGLSLRDWVWPIMRFTLPLAILIAGVTLFVGPWAD 125
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN 188
+ D + K + + + ++ + FI L D +
Sbjct: 126 QRSQDYAEIIKRREEISAISPGVFKESASSSKVYFIENYSGLHSAATN----IFMQDMTD 181
Query: 189 KIIHRKDADLAII-----YNDKVKLKKVVEY--QYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ A I + L+ Y + G+ + Q +
Sbjct: 182 GKVSTIFAKHGYISIKPDGERVLVLEDGKRYVGEPGQADYQIGEFKRYTAS-LGDSQAVT 240
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
++R ++ S + + + +P+ + + L+A +S RS
Sbjct: 241 GPASNRQSIPTSVLLAGSGNPE------YRAELAWRLSMPISCILLALLALPLSYYNPRS 294
Query: 302 NQPRIIVAYGIFSGFML 318
+ + + + F+
Sbjct: 295 GHTY-NLLFALLAFFVY 310
>gi|329956780|ref|ZP_08297349.1| permease, YjgP/YjgQ family [Bacteroides clarus YIT 12056]
gi|328523819|gb|EGF50906.1| permease, YjgP/YjgQ family [Bacteroides clarus YIT 12056]
Length = 605
Score = 53.3 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 40/125 (32%), Gaps = 3/125 (2%)
Query: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ 137
F N EL+ +A GIS+ +++ P ++ ++ + N I + L+
Sbjct: 49 TFGNFGERFELLAMKAAGISLLKIMRPLIIFISIICCVSFYFQNVIGPKAQTKLWTLLIS 108
Query: 138 WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDAD 197
K + + + + K + + D +K + +D
Sbjct: 109 MKQKSPEVDIPEGVFYDEIDGYN---LYVKHKNRKTGMLYDVLIYNFEKGFENAQIIKSD 165
Query: 198 LAIIY 202
+
Sbjct: 166 SGRLE 170
Score = 37.1 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 1/61 (1%)
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
F+ R T ++ + + L + I A + R + V +
Sbjct: 323 WSFKGFNISQTETSLRRHMTSWHEKLTLSLACLIFFFIGAPLG-GIIRKGGLGMPVVVSV 381
Query: 313 F 313
Sbjct: 382 L 382
>gi|91762159|ref|ZP_01264124.1| Predicted permease YjgP/YjgQ family protein [Candidatus
Pelagibacter ubique HTCC1002]
gi|91717961|gb|EAS84611.1| Predicted permease YjgP/YjgQ family protein [Candidatus
Pelagibacter ubique HTCC1002]
Length = 378
Score = 53.3 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 1/137 (0%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I+++ K + L + I+++V+ + + E + P
Sbjct: 1 MKKIVYKKLSKDCVNFFLLVVFTISIIIWVLQAVNYLDFVIE-DGHGFLVYFKYTLLSFP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
II +I PF + + +ELVI GI +N F+ S+ + ++L+
Sbjct: 60 KIISRIFPFTVFLAFSYILLKYENKNELVIFWNFGIKKINFINFFIKFSLWFVLISLLLN 119
Query: 121 NPIATSGEKIGIDLIQQ 137
I + I+
Sbjct: 120 AVITPFAQDKARSFIRS 136
>gi|187929751|ref|YP_001900238.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12J]
gi|309781533|ref|ZP_07676269.1| membrane protein [Ralstonia sp. 5_7_47FAA]
gi|187726641|gb|ACD27806.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12J]
gi|308919946|gb|EFP65607.1| membrane protein [Ralstonia sp. 5_7_47FAA]
Length = 372
Score = 53.3 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/356 (11%), Positives = 113/356 (31%), Gaps = 23/356 (6%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
+ L T + ++ + L M + + +L + ++
Sbjct: 7 LRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEANPNDVLLLIGLATLGYLAILLCA 66
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
+ ++V + SE+V+ GIS+ + P + S+ + L+ +
Sbjct: 67 TLFISVLLVLTRWYKDSEMVVWFTSGISLTDFIRPVLRFSLPFIVLVALLALFGWPWANQ 126
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHIWEDFTS 181
+++ +++ ++ +FI A+ + N +D
Sbjct: 127 QSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDSGMKHARNLFVANAE-QDKIG 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ + K + + + V L K Y+ +D ++ D +
Sbjct: 186 VAVAKTGEFKTMPN------GDRFVVLDKGRRYEGTPGKLDYRI------VEFDKYGVKV 233
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
++ + K + + + I +PL+ + LIA ++ R
Sbjct: 234 ANKPPQADANLPTKSRSTKDLLADPTPENLGELVWRIGLPLLALNFVLIAIPLAYVNPRL 293
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ ++ + ++ + +++ G + A P+ L + ++L +
Sbjct: 294 GRYTPMIF-AVLIYLTYSNLLNLSQAWVSQGKMNVFMA-WWPIHLAAFICAVLLFR 347
>gi|241663806|ref|YP_002982166.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12D]
gi|240865833|gb|ACS63494.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12D]
Length = 372
Score = 53.3 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/366 (10%), Positives = 116/366 (31%), Gaps = 43/366 (11%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
+ L T + ++ + L M + + +L + ++
Sbjct: 7 LRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEANPNDVLLLIGLATLGYLAILLCA 66
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
+ ++V + SE+V+ GIS+ + P + S+ + L+ +
Sbjct: 67 TLFISVLLVLTRWYKDSEMVVWFTSGISLTDFIRPVLRFSLPFILLVALLALFGWPWANQ 126
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHIWEDFTS 181
+++ +++ ++ +FI A+ + N +D
Sbjct: 127 QSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDNGMKHARNVFVANAE-QDKIG 185
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKK--------VVEYQYGRIPID--KNSTTLNIP 231
+ + K + + D I+ + + + +VE+ + + N+P
Sbjct: 186 VAMAKTGEFKTMPNGDRFIVLDKGRRYEGTPGKLDYRIVEFDKYGVKVANKPPQADANLP 245
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
K + + E++ ++ +PL+ + LIA
Sbjct: 246 TKSRSTKDLLANPTPENLGELVWRIG----------------------LPLLALNFVLIA 283
Query: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
++ R + ++ + ++ + +++ G + A P+ L +
Sbjct: 284 IPLAYVNPRLGRYTPMIF-AVLIYLTYSNLLNLSQAWVSQGKMNVFMA-WWPIHLAAFIC 341
Query: 352 ILILLQ 357
++L +
Sbjct: 342 AVLLFR 347
>gi|224532217|ref|ZP_03672849.1| conserved hypothetical integral membrane protein [Borrelia
valaisiana VS116]
gi|224511682|gb|EEF82088.1| conserved hypothetical integral membrane protein [Borrelia
valaisiana VS116]
Length = 390
Score = 52.9 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 43/96 (44%)
Query: 46 YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF 105
+ V +P++I PF +L+ I+ +E++ R+IGISI+ LL PF
Sbjct: 9 VPFFKAFVFIVYSLPMVIALSPPFASLISVILTIHKFKIHNEILAFRSIGISIFDLLVPF 68
Query: 106 VVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN 141
+++ + + + + G + + + K+
Sbjct: 69 FKLGVVIAFISFISNDILLPLGSIGRLKIFNEIKEE 104
Score = 40.2 bits (93), Expect = 0.47, Method: Composition-based stats.
Identities = 17/101 (16%), Positives = 41/101 (40%)
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ +KS I + +FY I +PL ++ +A S+ + +R + + I
Sbjct: 287 YQDKSMIQNLALFNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISIIVCVF 346
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + K + P+ ++P ++ I ++ L+
Sbjct: 347 YWVMFIGGKVYTVQYAPNPIVVTILPNLILIVAGAILFLRL 387
>gi|165919041|ref|ZP_02219127.1| putative permease [Coxiella burnetii RSA 334]
gi|165917236|gb|EDR35840.1| putative permease [Coxiella burnetii RSA 334]
Length = 370
Score = 52.9 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 40/317 (12%), Positives = 101/317 (31%), Gaps = 26/317 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K L T L L +I+ N ++ + + +VPL++
Sbjct: 2 IVFRYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAAA-GKITVKAVMEIMSLQVPLLL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + E+VI A G+S Q++ +V + +G+ ++ +
Sbjct: 61 GYLLPLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ +K Q + +F A + + +
Sbjct: 121 EPKMQWYRVKILKDAVATASLEKIVPGR-FQPLSSNGQVF-YAGGVNDHHQKMLNVFLAQ 178
Query: 184 IDKKNKIIHR--KDADLA-----IIYNDKVKLKKVVEY-----QYGRIPIDKNSTTLNIP 231
+ AD A + + K Y + + + +
Sbjct: 179 SETAGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLT 238
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + + + K + +A + + I +PL + L+
Sbjct: 239 SPAMDITGRVDAMPTSKLWHLHSK-----------DLKAAAELQWRIAMPLSVWLFALLI 287
Query: 292 ASVSLEFSRSNQPRIIV 308
+S R + ++
Sbjct: 288 VPLSEANPRKGKFAQML 304
>gi|269302797|gb|ACZ32897.1| putative permease, YjgP/YjgQ family [Chlamydophila pneumoniae
LPCoLN]
Length = 357
Score = 52.9 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 6/163 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
ILW+ YLKT + L + + + L EI + + + L A ++P +
Sbjct: 2 PILWKVLIFRYLKTAAFCTLSLICISIISSLQEIVAYIAK--DVPYDTVLRLMAYQIPYL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I+P V +F L+ +++ RA G S ++ P ++ S + +
Sbjct: 60 LPFILPGSCFVSAFSLFRKLSDNNQMTFLRASGASQSIIMFPVLMVSGAICCLNFYTCSE 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
+A+ I N ++ IFI
Sbjct: 120 LASICRYQTCKEIA----NMAMTSPALLLQTLQKKENNRIFIA 158
>gi|315636695|ref|ZP_07891925.1| conserved hypothetical protein [Arcobacter butzleri JV22]
gi|315479010|gb|EFU69713.1| conserved hypothetical protein [Arcobacter butzleri JV22]
Length = 338
Score = 52.9 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 11/206 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + T G + VI L +I + + + + + +P II
Sbjct: 3 LQRYLYSQLAITFFPIFFGLFFITAVIFLVKIS-ALTAIITVNFFELFRIFSYTIPDIIF 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + ++ L+ EL + + G++ +++L F+ ++LL + ++V +
Sbjct: 62 YTMPISFFISMVITLSKLSSEYELTVITSFGLNPFKILKIFLPLTLLLTLLLLVVSVGLI 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + K+ + IFI KK N+++ED + +
Sbjct: 122 PKTDFERKQFVNIKKNEANFNIKSGEFG--QKFGDWLIFINDKK----NNLYEDVKLLKV 175
Query: 185 -DKKNKIIHRKDADLAIIYNDKVKLK 209
+ ++ + K+A ++ NDK L
Sbjct: 176 QNDNDQFVISKNA---VLDNDKGVLS 198
>gi|169837522|ref|ZP_02870710.1| Hypothetical membrane-spanning protein [candidate division TM7
single-cell isolate TM7a]
Length = 92
Score = 52.9 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 11/70 (15%), Positives = 26/70 (37%)
Query: 50 RGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGS 109
P II P L+ +++ + + E+ + GIS ++ ++ S
Sbjct: 9 DAIKYLRYGTPEIITNTAPLGVLLGSLLCISKMAKQLEIAAMKTSGISFARIALFPMIFS 68
Query: 110 ILLGIFTVLV 119
L+ + +
Sbjct: 69 FLVSMGVFWI 78
>gi|153209375|ref|ZP_01947370.1| putative permease [Coxiella burnetii 'MSU Goat Q177']
gi|120575375|gb|EAX31999.1| putative permease [Coxiella burnetii 'MSU Goat Q177']
Length = 370
Score = 52.9 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 40/317 (12%), Positives = 101/317 (31%), Gaps = 26/317 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY K L T L L +I+ N ++ + + +VPL++
Sbjct: 2 IVFRYLCKEILGTLLATTLILLIIFMTNQFIHYLNDAAA-GKITVKAVMEIMSLQVPLLL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++P + ++ + E+VI A G+S Q++ +V + +G+ ++ +
Sbjct: 61 GYLLPLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ +K Q + +F A + + +
Sbjct: 121 EPKMQWYRVKILKDAVATASLEKIVPGR-FQPLSSNGQVF-YAGGVNDHHQKMLNVFLAQ 178
Query: 184 IDKKNKIIHR--KDADLA-----IIYNDKVKLKKVVEY-----QYGRIPIDKNSTTLNIP 231
+ AD A + + K Y + + + +
Sbjct: 179 SETAGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLT 238
Query: 232 IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIA 291
+ + + + K + +A + + I +PL + L+
Sbjct: 239 SPAMDITGRVDAMPTSKLWHLHSK-----------DLKAAAELQWRIAMPLSVWLFALLI 287
Query: 292 ASVSLEFSRSNQPRIIV 308
+S R + ++
Sbjct: 288 VPLSEANPRKGKFAQML 304
>gi|71908694|ref|YP_286281.1| permease YjgP/YjgQ [Dechloromonas aromatica RCB]
gi|71848315|gb|AAZ47811.1| permease YjgP/YjgQ [Dechloromonas aromatica RCB]
Length = 360
Score = 52.9 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/315 (10%), Positives = 107/315 (33%), Gaps = 23/315 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATR-VP 60
I R + + + + + ++ +L + + G + +++ +A +P
Sbjct: 2 IFERAARREFAQAAAGISVALLAILTSTNLIRLLKEAAGGRIAPEAVASLLGFSALNFMP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+++ + L+ + R SE+V+ + G+ + ++P + + + I +V
Sbjct: 62 VLLSLTLFVSVLLS----LSRVYRDSEMVVWFSSGLPLTGWVSPVLRFAAPIVIAIAVVS 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+A + ++ + + + ++ Q+ F+ + + + +
Sbjct: 118 GFLAPWANSSSAEYREKLSARSELSQVSPGAFREVKKGQRVFFV--EGVEGDGSHVGNVF 175
Query: 181 SITIDKKNKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + + +D + V L+ Y+ P +
Sbjct: 176 VASYQEGK--LGVIMSDSGYQEASGNGDRFVVLEHGRRYEV--EPGTPAFKVMEFERYRA 231
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + S K M + + + + A + + + +P+ + + L+A +S
Sbjct: 232 RVEDGEPSPSDVS----PKGMPIT-RLVLEDSNPARGELLWRVGLPVSALVLCLLAIPLS 286
Query: 296 LEFSRSNQPRIIVAY 310
R+ + ++
Sbjct: 287 YVNPRAGRSANMLIA 301
>gi|88810918|ref|ZP_01126174.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
gi|88791457|gb|EAR22568.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
Length = 358
Score = 52.9 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 37/349 (10%), Positives = 110/349 (31%), Gaps = 30/349 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISR--GAVLAATRVPL 61
++ RY + + + +L + + + + + ++ A++ A R +
Sbjct: 3 LIERYLIAEVRRPLVAVVG---VLSLIFASYSVARYLADALSETLGMQAVALMVALRTLI 59
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
++ +IP ++ L E+ + A+GIS ++ ++ ++ + + +
Sbjct: 60 ALEVLIPVALYASVVIGLGRLYNDQEMTVLGAVGISSARVYWAILLLALPVALAVGALSL 119
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ + + + + + A+++ + +
Sbjct: 120 FGRPWAYQQAYQAEAHAHVEIPLDRLRAGH-FYVESQTGRMIL-AQEVDDQRGLLHGVLI 177
Query: 182 ITIDKKNKIIHR---------KDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPI 232
+ + + + AD A + L V Y + +
Sbjct: 178 YQRAGEATYLTKARQARQLPTEQADEARL-----ILHDGVTYLLDQAGSHDRI------L 226
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ +Q Y+ + + + AE Q+ + PL V + L
Sbjct: 227 RFGELSLRLQQPQPVVGYKRKAAPTAALARSGNPAELAELQW--RLSRPLTTVLLALFGV 284
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+S R + I+ + ++Y+ + K++ + G++ V
Sbjct: 285 PLSRTAPRRGRFSKILLAALVYA-LIYSASGLAKTWVEHGVVGAVPGIW 332
>gi|219685677|ref|ZP_03540491.1| conserved hypothetical integral membrane protein [Borrelia garinii
Far04]
gi|219672793|gb|EED29818.1| conserved hypothetical integral membrane protein [Borrelia garinii
Far04]
Length = 390
Score = 52.5 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 43/96 (44%)
Query: 46 YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF 105
+ + +P++I PF +L+ I+ +E++ R+IGISI+ L+ PF
Sbjct: 9 VPFLKAFIFIIYSLPMVIALSPPFASLISVILTIHKFKINNEILAFRSIGISIFDLIFPF 68
Query: 106 VVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN 141
+++ + + + + G + + + K+
Sbjct: 69 FKLGVVIVFISFISNDILLPLGSIGRLKIFNEIKEE 104
Score = 41.4 bits (96), Expect = 0.25, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 35/89 (39%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+FY I +PL ++ +A S+ + +R + + I + + K +
Sbjct: 299 FNLEFYQKISLPLSVLFFIFLAFSMGMYSNRKYSIILELVISIIICVFYWVMFIGGKVYT 358
Query: 330 KSGILLPVAAALIPVILTISLSILILLQK 358
P+ ++P ++ I ++ L+
Sbjct: 359 VQYAPNPIIVTILPNLILIIAGAILFLRL 387
>gi|171059277|ref|YP_001791626.1| permease YjgP/YjgQ family protein [Leptothrix cholodnii SP-6]
gi|170776722|gb|ACB34861.1| permease YjgP/YjgQ family protein [Leptothrix cholodnii SP-6]
Length = 364
Score = 52.5 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/238 (12%), Positives = 69/238 (28%), Gaps = 11/238 (4%)
Query: 15 KTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVV 74
++ L+ + +V + L Q L S +L + ++ V
Sbjct: 13 RSFGGTLIVILTIVLTMMLIRTLGQAA-LGRVSPQDVVLLLGYTSLGHLPTMLCLSLFVA 71
Query: 75 NIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDL 134
+ + SE+ I A G+S+ + + P V + F ++ + + +L
Sbjct: 72 VVSTLTRMYGDSEMTIWFASGVSLTRFVRPVVRFGTPIVFFVAALLLFVWPWSNRNISEL 131
Query: 135 IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIH-- 192
+++ D + + ++ K P+ + + + +
Sbjct: 132 RGRYEQRSDLSRVAPGQF--QTSSNGQRVFFIDKQSPDAGTGRNIFILDQRVDRESVTSA 189
Query: 193 ---RKDADLAIIYNDKVKLKKVVEYQY---GRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
R D A + ++ L G +I I + E
Sbjct: 190 QTGRIDLPDADDTHRRLVLDNGARTDLDLKGETRTISRFDQYSIRISEKALTRIDEPP 247
>gi|300312408|ref|YP_003776500.1| permease [Herbaspirillum seropedicae SmR1]
gi|300075193|gb|ADJ64592.1| permease transmembrane protein [Herbaspirillum seropedicae SmR1]
Length = 376
Score = 52.5 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 42/322 (13%), Positives = 89/322 (27%), Gaps = 47/322 (14%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + L +I Q S A++ +
Sbjct: 2 IFQRALRRELTSTAGGVFTTLFTITLTVMLIKILGQAAGGQVASQDVIALIGFQSL---- 57
Query: 64 QQIIPFI-TLVVNIVVFFNLNRT---SELVISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
+P I L I V + R+ SE+V+ A G+S+ + + P + + +
Sbjct: 58 -NYMPIILILTGFISVLLVMTRSYQDSEIVVWFACGMSLTRWIAPVLRFGWPIVALVAAL 116
Query: 120 INPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDF 179
+ + +++ D + + + + + I + +
Sbjct: 117 SFVATPWANQQSSEYRSRFEQREDIARVSPGKF--QESAAANRIFFVEGISGDASKVRNI 174
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
TI K VV + G ID + + + +
Sbjct: 175 FVNTIGADGK-------------------NSVVVAKEGETVIDPDGEKFVVMNQGRRYDG 215
Query: 240 FSE--QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFL---------------IVIPL 282
F F + +++ Q L I +P
Sbjct: 216 SPGLPDFQIVDFERYGLLIGNQSQNAAGERSARALQMNELVAKNDGYARGELLWRIALPF 275
Query: 283 MLVAMTLIAASVSLEFSRSNQP 304
M + + L+A +S R+ +
Sbjct: 276 MALTLMLLAIPLSFVNPRAGRS 297
>gi|116690487|ref|YP_836110.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia HI2424]
gi|170733808|ref|YP_001765755.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia MC0-3]
gi|116648576|gb|ABK09217.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia HI2424]
gi|169817050|gb|ACA91633.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia MC0-3]
Length = 364
Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/333 (10%), Positives = 105/333 (31%), Gaps = 27/333 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAAS-GEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V R SE+V+ A G+S+ +L+ P V + + +
Sbjct: 61 AVMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLITFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI +K+ P+ ++ +T
Sbjct: 121 WPWSNQQSKMIRARFQQRDEISLLAPGQFRESAANHRVFFI--EKMSPDQSKVQNV-FVT 177
Query: 184 IDKKNKIIHRK----DADLAIIYNDKVKLKKVVEY--QYGRIPI---DKNSTTLNIPIKM 234
+ K+ + + + V L+ Y G+ + + I K
Sbjct: 178 STENGKVNVVVSQTGHTETSKDGDRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSKP 237
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + + + + + + +PL+ + + ++ +
Sbjct: 238 VTNVQTTNSTPTPDLLRNPTRDNLAEFAWRAG-------------LPLIAINLMVLGIPL 284
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
S + R ++ I + + ++ ++++
Sbjct: 285 SYQNPRRSRT-INLVMAVLIYLTYSNLLNVVQA 316
>gi|87121690|ref|ZP_01077577.1| hypothetical protein MED121_19119 [Marinomonas sp. MED121]
gi|86162941|gb|EAQ64219.1| hypothetical protein MED121_19119 [Marinomonas sp. MED121]
Length = 368
Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/311 (13%), Positives = 108/311 (34%), Gaps = 28/311 (9%)
Query: 9 FFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIP 68
K L +T+ ++++ + E + ++ +P +Q IIP
Sbjct: 1 MAKEVLVSTMAVSFILLLIIASGRFVSYLGRAAE-GKMTFEFLFIILGFHIPSFLQIIIP 59
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
+ ++ + L +E+ I A GIS +L + +++ + + +A + E
Sbjct: 60 LSFFLALLLAYGRLYIENEMSILFACGISKVKLTFYTLGIALIATLVNASISLWLAPTSE 119
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF--IGAKKILPENHIWEDFTSIT--- 183
Q ++ + + ++Q Q F +I PE +D
Sbjct: 120 ------YQSQLAKAEQDQLTVFDFLQPGRFQGKGFNTTYVAEITPEEGWMKDVFISNTSK 173
Query: 184 IDKKNKIIH--RKDADLAIIYNDKVKL--KKVVEYQYGRIPIDKNSTTLNIPIKM--DGF 237
++ KN A+ + L K ++ +D T + + +
Sbjct: 174 VEGKNIPTQTLASHAEQIQLEGGDTYLVFKNGTRFEGVPGQLDYRITQFDTYAVLLDEKG 233
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ E +++ EI + + ++ ++ + I + +M+ + +I S+S
Sbjct: 234 ELSIEDPSTKPSSEIWRSDDLNEQA----------EWQWRISLVIMIPILAIIGTSLSQV 283
Query: 298 FSRSNQPRIIV 308
R + ++
Sbjct: 284 NPRQGRFFKML 294
>gi|309794091|ref|ZP_07688516.1| conserved hypothetical protein [Escherichia coli MS 145-7]
gi|308122498|gb|EFO59760.1| conserved hypothetical protein [Escherichia coli MS 145-7]
Length = 356
Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 5/177 (2%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++ V
Sbjct: 15 LVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLLVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
Q + D ++ + + + I ++ + +N+ D T I R
Sbjct: 135 QSQSELDVRQ---LRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRTRIFR 188
>gi|237750188|ref|ZP_04580668.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
gi|229374082|gb|EEO24473.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
Length = 356
Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 57/360 (15%), Positives = 121/360 (33%), Gaps = 32/360 (8%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
+ YLK TL L G +D + + + + N +I A A ++
Sbjct: 5 FVALRYLKPTLVILCGLEFFFICVDSLQYFDALAQSANNAIWFLAFDAMY----AFNYVL 60
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P L+ IV + +L ++++ V ++G S ++ P + L+ + +
Sbjct: 61 PLALLLGLIVFYISLIKSNQYVALLSLGYSRRKIFYPPFLIINLVVCGYIGLNATDFVYA 120
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT--ID 185
++ +++ + + +++ + ++ +K+ P E+
Sbjct: 121 QERADNIV----SSSNNADVSKDLFIRYNTD----YVFFEKVYPLLQKAENIQIYHTEYK 172
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEY---------QYGRIPIDKNSTTLNIPIKMDG 236
K++ A +ND+ KL G I +STT K
Sbjct: 173 DSRKLVSITRAKEGYFHNDEWKLLNPQVSILPTSYDLGDKGMITTGHDSTTTLKGFKPKV 232
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
F + + S + + + R Y L V P + + +I A +
Sbjct: 233 LDTFYKNKPAISITDAFYSLQILMQ-EGADTARTRGVLYTLAVTPFFISMLCVIIAYYAP 291
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+R + G+ + + + S GK A IP ++ + + ILL
Sbjct: 292 PLARYGNLAM---LGVSLSVLSLMVWGVFFSLGKLNA----NAVFIPE-FSMLVPLGILL 343
>gi|134095577|ref|YP_001100652.1| hypothetical protein HEAR2400 [Herminiimonas arsenicoxydans]
gi|133739480|emb|CAL62531.1| putative permease [Herminiimonas arsenicoxydans]
Length = 347
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/284 (12%), Positives = 92/284 (32%), Gaps = 20/284 (7%)
Query: 41 GELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQ 100
G++ + + +A + I+ + ++V + SE+V+ A G+S+ +
Sbjct: 12 GKVASADVVALIGFSALN---YLPIILNLAGFMSVLLVVTRSYQDSEMVVWFASGLSLAR 68
Query: 101 LLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ 160
+ P +V ++ + + T L+ + + +++ + D + + + S+ +
Sbjct: 69 WIPPVLVFALPIVVMTTLLSLFLTPWSNQQSAIYKERYANREDIARVSPGKFQESSSSDR 128
Query: 161 DIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY-----NDKVKLKKVVEYQ 215
F+ +S+ K A + + + + + Y
Sbjct: 129 VFFVEGVAGDSSKVRNIFVSSVRNGK----TSVVVAKEGTVEIDPAGDKFLVMHQGRRYD 184
Query: 216 YGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFY 275
D + + Q S + + N++N
Sbjct: 185 GVPTQSDFQLMEFDRYGVLVASQ-SQALVGDTSARALTTQELLRNRNNFNDGELLW---- 239
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLY 319
+ +PLM V + L+A + R + +F F+ Y
Sbjct: 240 -RVSLPLMGVLLMLLAIPLGFVNPR-GGRSANLLIALFL-FVFY 280
>gi|237718006|ref|ZP_04548487.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229452647|gb|EEO58438.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 380
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/98 (14%), Positives = 33/98 (33%), Gaps = 1/98 (1%)
Query: 257 SFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGF 316
F+ ++N + + +T+++ I I L + I A + R + V +
Sbjct: 104 KFTMENNDYSIRKHKTEWHKKITISLSCLLFFFIGAPLG-GIIRKGGLGMPVIVSVLVFI 162
Query: 317 MLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ Y I + G + + L + +
Sbjct: 163 IYYIIDNTGYKMARDGKWIVWMGMWTSSAVLAPLGVFL 200
>gi|161524006|ref|YP_001579018.1| permease YjgP/YjgQ family protein [Burkholderia multivorans ATCC
17616]
gi|189351233|ref|YP_001946861.1| YjgP/YjgQ-like transporter [Burkholderia multivorans ATCC 17616]
gi|221199307|ref|ZP_03572351.1| putative membrane protein [Burkholderia multivorans CGD2M]
gi|221205791|ref|ZP_03578806.1| putative membrane protein [Burkholderia multivorans CGD2]
gi|221211524|ref|ZP_03584503.1| putative membrane protein [Burkholderia multivorans CGD1]
gi|160341435|gb|ABX14521.1| permease YjgP/YjgQ family protein [Burkholderia multivorans ATCC
17616]
gi|189335255|dbj|BAG44325.1| YjgP/YjgQ-like transporter [Burkholderia multivorans ATCC 17616]
gi|221168885|gb|EEE01353.1| putative membrane protein [Burkholderia multivorans CGD1]
gi|221174629|gb|EEE07061.1| putative membrane protein [Burkholderia multivorans CGD2]
gi|221180592|gb|EEE12995.1| putative membrane protein [Burkholderia multivorans CGD2M]
Length = 364
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/361 (11%), Positives = 113/361 (31%), Gaps = 36/361 (9%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAAS-GEVDPKDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V R SE+V+ A G+S+ +L+ P V + + +
Sbjct: 61 AVMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIIVLITFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + ++ + FI +K+ P+ ++ +T
Sbjct: 121 WPWSNQQSRLIKARFQQRDEISLLAPGQFRESASNHRVFFI--EKMTPDQSKVQNV-FVT 177
Query: 184 IDKKNKIIHRK----DADLAIIYNDKVKLKKVVEY--QYGRIPI---DKNSTTLNIPIKM 234
+ K+ + + V L+ Y G+ + + I K
Sbjct: 178 STENGKVNVVVSQTGHTETTKDGDRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSKP 237
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + + + + + +PL+ + + ++ +
Sbjct: 238 VVNVPTTSSTPTPELLRNPTRDNLAEFAWRAG-------------LPLIAINLMVLGIPL 284
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSG---------ILLPVAAALIPVI 345
+ + R ++ I + + ++ ++++ + G L V AA++ I
Sbjct: 285 AYQNPRRSRT-INLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVALHVVVAAIVAFI 343
Query: 346 L 346
Sbjct: 344 F 344
>gi|157738400|ref|YP_001491084.1| hypothetical protein Abu_2200 [Arcobacter butzleri RM4018]
gi|157700254|gb|ABV68414.1| conserved hypothetical membrane protein [Arcobacter butzleri
RM4018]
Length = 338
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/205 (18%), Positives = 77/205 (37%), Gaps = 9/205 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + T G + VI L +I + + + + + +P II
Sbjct: 3 LQRYLYSQLAITFFPIFFGLFFITAVIFLVKIS-ALTAIITVNFFELFRIFSYTIPDIIF 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
+P + ++ L+ EL + + G++ +++L F+ ++LL + ++V +
Sbjct: 62 YTMPISFFISMVITLSKLSSEYELTVITSFGLNPFKILKIFLPLTLLLTLLLLVVSVGLI 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ + K+ + IFI KK N+++ED + +
Sbjct: 122 PKSDFERKQFVNIKKNEANFNIKSGEFG--QKFGDWLIFINDKK----NNLYEDVKLLKV 175
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLK 209
K N + A++ ND L
Sbjct: 176 QKDND--QFVISKNAVLDNDNGVLS 198
>gi|107023405|ref|YP_621732.1| permease YjgP/YjgQ [Burkholderia cenocepacia AU 1054]
gi|105893594|gb|ABF76759.1| permease YjgP/YjgQ [Burkholderia cenocepacia AU 1054]
Length = 364
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/333 (10%), Positives = 105/333 (31%), Gaps = 27/333 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I VL V +
Sbjct: 2 IFERSLQRELAYTASAVFMVLLTIMLTTMMIRIVGYAAS-GEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V R SE+V+ A G+S+ +L+ P V + + +
Sbjct: 61 AVMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLITFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI +K+ P+ ++ +T
Sbjct: 121 WPWSNQQSKMIRARFQQRDEISLLAPGQFRESAANHRVFFI--EKMSPDQSKVQNV-FVT 177
Query: 184 IDKKNKIIHRK----DADLAIIYNDKVKLKKVVEY--QYGRIPI---DKNSTTLNIPIKM 234
+ K+ + + + V L+ Y G+ + + I K
Sbjct: 178 STENGKVNVVVSQTGHTETSKDGDRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSKP 237
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + + + + + + +PL+ + + ++ +
Sbjct: 238 VTNVQTTNSTPTPDLLRNPTRDNLAEFAWRAG-------------LPLIAINLMVLGIPL 284
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
S + R ++ I + + ++ ++++
Sbjct: 285 SYQNPRRSRT-INLVMAVLIYLTYSNLLNVVQA 316
>gi|33242365|ref|NP_877306.1| hypothetical protein CpB1034 [Chlamydophila pneumoniae TW-183]
gi|33236876|gb|AAP98963.1| hypothetical protein CpB1034 [Chlamydophila pneumoniae TW-183]
Length = 357
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 6/163 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
ILW+ YLKT + L + + + L EI + + + L A ++P +
Sbjct: 2 PILWKVLIFRYLKTAAFCTLSLICISIISSLQEIVAYIAK--DVPYDTVLRLMAYQIPYL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I+P V +F L+ + + RA G S ++ P ++ S + +
Sbjct: 60 LPFILPGSCFVSAFSLFRKLSDNNHMTFLRASGASQSIIMFPVLMVSGAICCLNFYTCSE 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
+A+ I N ++ IFI
Sbjct: 120 LASICRYQTCKEIA----NMAMTSPALLLQTLQKKENNRIFIA 158
>gi|15618904|ref|NP_225190.1| hypothetical protein CPn0996 [Chlamydophila pneumoniae CWL029]
gi|15836527|ref|NP_301051.1| hypothetical protein CPj0996 [Chlamydophila pneumoniae J138]
gi|16752031|ref|NP_445397.1| hypothetical protein CP0859 [Chlamydophila pneumoniae AR39]
gi|4377325|gb|AAD19133.1| CT839 hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|7189771|gb|AAF38648.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
gi|8979369|dbj|BAA99203.1| CT839 hypothetical protein [Chlamydophila pneumoniae J138]
Length = 357
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 6/163 (3%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
ILW+ YLKT + L + + + L EI + + + L A ++P +
Sbjct: 2 PILWKVLIFRYLKTAAFCTLSLICISIISSLQEIVAYIAK--DVPYDTVLRLMAYQIPYL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ I+P V +F L+ + + RA G S ++ P ++ S + +
Sbjct: 60 LPFILPGSCFVSAFSLFRKLSDNNHMTFLRASGASQSIIMFPVLMVSGAICCLNFYTCSE 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
+A+ I N ++ IFI
Sbjct: 120 LASICRYQTCKEIA----NMAMTSPALLLQTLQKKENNRIFIA 158
>gi|226940338|ref|YP_002795412.1| permease YjgP/YjgQ [Laribacter hongkongensis HLHK9]
gi|226715265|gb|ACO74403.1| permease YjgP/YjgQ [Laribacter hongkongensis HLHK9]
Length = 363
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/361 (11%), Positives = 106/361 (29%), Gaps = 27/361 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R + + ++ V + ++ ++ L A
Sbjct: 2 IFYRSVIRELTAVAFAVFSVLLAIMVVTQVVKLFDKAAS-GALPADAIVALIAFSTLGYF 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + IVV + R E+ + G+S + + P + ++ L + V +
Sbjct: 61 GTLLSITLFISVIVVLTRIWRDHEMAVWLTSGLSPNRWIRPVLAFAVPLTLLIATVSLFL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ G + + + + + + E + +
Sbjct: 121 GPWAARKGSEYTDILRQQDEISAVAPGVFK--ESRDGSKVYFVENYSGEAGSATNLFVRS 178
Query: 184 IDKKNKIIHRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLN---IPIKMD 235
I+ A I+ + L Y+ D + I +
Sbjct: 179 IENGK--TSLVFAREGIVRTEPNGERYLYLTDGRRYEGEAGAADWKVVEFRKYKVKINQN 236
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ S + + + A + + + +P+ + + L+A +S
Sbjct: 237 IRTTVDTRTKSVPSSMLW----------LANTPDARAELAWRVSLPIASLILALLAIPLS 286
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
RS Q + IF + Y ++ +++S+ G L + + L + +L
Sbjct: 287 YYNPRSGQTF-NLLIAIFVYQLYYNLMGVVQSWISKGELSVWSMVW---LHLTMLGLFVL 342
Query: 356 L 356
L
Sbjct: 343 L 343
>gi|118602490|ref|YP_903705.1| permease YjgP/YjgQ family protein [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
gi|118567429|gb|ABL02234.1| permease YjgP/YjgQ family protein [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
Length = 371
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 62/356 (17%), Positives = 125/356 (35%), Gaps = 36/356 (10%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY + + ++VF L I + + I+ L + +
Sbjct: 17 ILARYLMRNVSVLLSVVFIVISLVVFGNQLVLIIKETSK-EGIPIADLLPLVGLNMIRDV 75
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGI---SIWQLLNPFVVGSILLGIFTVLVI 120
I+ L+ I+ L + SE ++ ++G+ + P V+ ++ V+
Sbjct: 76 VLILSLSLLLAIILSVSKLYKASEAIVMNSLGLGDKHFMVFIQPLVIVIVIFIFILTTVV 135
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN----HIW 176
P + + ++ + + +K++ DI A K+ +
Sbjct: 136 VPWSKQQRGLIMERSENTPEFSFIKKNEF-----QEFKNNDIVFYASKVSDADNAKEQNM 190
Query: 177 EDFTSITIDKKNKIIHRKDADLAIIYND------KVKLKKVVEYQYGRIPIDKNSTTLNI 230
E+ T+ +I A A Y + ++LK Y P +KN LN
Sbjct: 191 EEIFIYTLVNNEPVITL--AKQAQKYTNFNTNSVYLRLKNGTRYH--GFPSNKNKKILNF 246
Query: 231 PIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET-QFYFLIVIPLMLVAMTL 289
K+ Q + +S + K S S +F N E +F + I PL ++ +++
Sbjct: 247 --KLYDLQIIDGKMQ-KSISTVTKVESKSTFELLFSNKLTEIAEFQWRISQPLSILILSV 303
Query: 290 IAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIIT----IMKSFGKSGILLPVAAAL 341
+ + RS + G+ G +++ + I KS + G P+
Sbjct: 304 LGVLLGKTSPRSGKN-----LGVLVGVVMFIVYNNVLLIAKSTLERGESSPIVGLW 354
>gi|319793491|ref|YP_004155131.1| permease yjgp/yjgq family protein [Variovorax paradoxus EPS]
gi|315595954|gb|ADU37020.1| permease YjgP/YjgQ family protein [Variovorax paradoxus EPS]
Length = 379
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/319 (13%), Positives = 104/319 (32%), Gaps = 19/319 (5%)
Query: 15 KTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVV 74
++ L+ + +V + L + + + ++ A V + I+ +
Sbjct: 13 RSFGATLVVLVTIVMTMMLIRTLG-LASKGSVNPQEVFLVMAYTVLGYMPTILSLSLFIA 71
Query: 75 NIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDL 134
+ + R SE+VI + G + + P + + I ++ + +
Sbjct: 72 IVGTLSRMYRDSEMVIWFSSGRGLADFVEPLFRFAWPVLILIAVMALVGWPWANSQTMGM 131
Query: 135 IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRK 194
QQ++ D ++ + + S + FI K P+ + I++ +I
Sbjct: 132 RQQYEQRSDIERVTPGEFRESSGRMRVFFI--DKDTPDGATATNVFIWAIERGLQITT-- 187
Query: 195 DADLAIIY----NDKVKLKKVVEYQYGRIPID--KNSTTLNIPIKMDGFQKFSEQFASRS 248
A I N + L + +P K S + G +
Sbjct: 188 SARSGRIEDVGPNRFLMLSNGQRLERPLLPTSGLKISEFKTYGTRAGGSSDATANTTPPR 247
Query: 249 FYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+ + + + + I + L + L+A +VS R + +
Sbjct: 248 ARTTLSLLRDRSTAALGELGW-------RIGMLLAAINFVLLALTVSSVNPRVGRSG-NL 299
Query: 309 AYGIFSGFMLYTIITIMKS 327
+ +F+ + Y ++ + +S
Sbjct: 300 LFALFAFVIYYNLLNLGQS 318
>gi|152981611|ref|YP_001354150.1| hypothetical protein mma_2460 [Janthinobacterium sp. Marseille]
gi|151281688|gb|ABR90098.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 376
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 49/365 (13%), Positives = 119/365 (32%), Gaps = 32/365 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATRVPL 61
I R + L T + + L I Q G++ + + +A
Sbjct: 2 IFQRALRRDLLSTAGAVFTTLFTITITVTLIRILGQAAGGKIASSDVVALLGFSALN--- 58
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ V ++V + SE+V+ A G+S+ + + P ++ + + T ++
Sbjct: 59 YLPILLNLTGFVAVLLVVTRSYQDSEMVVWFASGLSLAKWIQPVLMFGLPIVTLTAVLSL 118
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPEN-------H 174
+ + +++ + D + + + S+ + F+
Sbjct: 119 FLTPWSNEQSAVYKERYANREDIARVSPGKFQESSSSDRVFFVEGVSGDSTKVKNIFVSS 178
Query: 175 IWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ TS+ + K+ + D A + + + + Y D + +
Sbjct: 179 VLNGKTSVVVAKEGT----VEIDQA--GDKFLVMHQGRRYDGIPTQSDFELMEFDRYGVL 232
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
Q + S K SN++N + +PLM + + L+A +
Sbjct: 233 VATQSKA-LVGDTSARATSTKELLSNRNNFNDGEILW-----RVSLPLMGILLMLLAIPL 286
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGIL---LPVAAALIPVILTISLS 351
R + + L+ + M SF ++ ++ + A PV L +
Sbjct: 287 GFVNPRGGRSAN-----LLIALFLFVFYSNMLSFAQATVVQNRSTLMLAWWPVHLVALIV 341
Query: 352 ILILL 356
+ +
Sbjct: 342 VAVFF 346
>gi|254251665|ref|ZP_04944983.1| hypothetical protein BDAG_00857 [Burkholderia dolosa AUO158]
gi|124894274|gb|EAY68154.1| hypothetical protein BDAG_00857 [Burkholderia dolosa AUO158]
Length = 364
Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/358 (12%), Positives = 118/358 (32%), Gaps = 30/358 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAAS-GEVDPKDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V R SE+V+ A G+S+ +L+ P V + + +
Sbjct: 61 AVMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIIVLIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI +K+ P+ ++ +T
Sbjct: 121 WPWSNQQSKMIKARFQQRDEISLLAPGQFRESAANHRVFFI--EKMTPDQSKVQNV-FVT 177
Query: 184 IDKKNKIIHRK----DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ K+ + + + V L+ Y T K+ F++
Sbjct: 178 STENGKVNVVVSQTGHTETSKDGDRFVVLEDGRRYDG---------TPGQPNFKIMEFER 228
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET-QFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S+ + + + R +F + +PL+ + + ++ ++ +
Sbjct: 229 YGVKITSKPIVNVPTTSGTPTLELLRNPTRDNLAEFAWRAGLPLIAINLMVLGIPLAYQN 288
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKS----------FGKSGILLPVAAALIPVIL 346
R ++ I + + ++ ++++ G G L + AA++ I
Sbjct: 289 PRRSRT-INLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVG-LHVIVAAIVAFIF 344
>gi|332520665|ref|ZP_08397127.1| permease YjgP/YjgQ family protein [Lacinutrix algicola 5H-3-7-4]
gi|332044018|gb|EGI80213.1| permease YjgP/YjgQ family protein [Lacinutrix algicola 5H-3-7-4]
Length = 540
Score = 51.8 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 1/110 (0%)
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
A S +II+ + K+ R + + L + + + A + R
Sbjct: 315 AISSTTQIIQSKEANLKTKSNWLNRHIIALHEKFALALACIILFFVGAPLGA-LIRKGGL 373
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILI 354
+ + I + I K+ K G P A ++ + LSI +
Sbjct: 374 GLPMVIAIVLFLTYHFIGIFAKNSAKDGTFNPALATWFSTLIMLPLSIYL 423
Score = 44.1 bits (103), Expect = 0.032, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 2/108 (1%)
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
+I+VF N E ++ GIS+ + ++ V + L I T N + E +
Sbjct: 49 ASIMVFGNFAENYEFAAMKSTGISLQRAMSGLSVFIVALSITTFFFSNNVIPWAEYNSFN 108
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
L + + QI + +KK E
Sbjct: 109 LRKNIAKVKPAMAIAEGQFNQIG--EGFNIKVSKKTGDRGQFLEKVVI 154
>gi|262363206|gb|ACY59927.1| membrane protein [Yersinia pestis D106004]
Length = 225
Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 1/162 (0%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I+ RY + LK+ + L +++ F L I + + L VP +
Sbjct: 2 IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVD-GEIPTNVVLSLLGLGVPEMA 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q I+P + ++ L SE+ + A G+ L+ ++ ++ + +
Sbjct: 61 QLILPLSLFLGLLMTLGKLYTESEITVMNACGMGKKSLIMAALILALFTSGLAAINTIWL 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIG 165
K ++ K N + ++ +FIG
Sbjct: 121 GPWSSKHQDVVLNDAKANPSLAALGGGQFKSSNDGNSALFIG 162
>gi|17547135|ref|NP_520537.1| hypothetical protein RSc2416 [Ralstonia solanacearum GMI1000]
gi|17429437|emb|CAD16123.1| putative permease transmembrane protein [Ralstonia solanacearum
GMI1000]
Length = 372
Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/353 (10%), Positives = 102/353 (28%), Gaps = 17/353 (4%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
+ L T + ++ + L M S + +L + ++
Sbjct: 7 LRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLAALGYLAILLCA 66
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
+ ++V + SE+V+ G+S+ + P + S+ + L+ +
Sbjct: 67 TLFISVLLVLTRWYKDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVGLLALFGWPWANQ 126
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
+++ + I + + + + + + +
Sbjct: 127 QSALFRDRFEQRDVLSMISAGRF--IEPAHGNYVLFIEGVDAGMKHARN--LFVANAEQD 182
Query: 190 IIHRKDADLAIIYND-----KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
I A V L K Y+ P + + Q
Sbjct: 183 KIGVALAKTGEFKAGPNGDRYVVLDKGRRYE--GTPGQLDYRIVEFDRYGVKVANKPPQA 240
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ + K + + + + I +PL+ + LIA ++ R +
Sbjct: 241 DA----NLPTKSRPTTELLSNPTPENMGELVWRIGLPLLALNFVLIAIPLAYVNPRLGRY 296
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
++ + ++ + +++ G + + A P+ L + +L +
Sbjct: 297 TPMIF-AVLIYLTYSNLLNLSQAWVAQGKMSAMLA-WWPIHLAAFVCAGLLFR 347
>gi|121611822|ref|YP_999629.1| permease [Verminephrobacter eiseniae EF01-2]
gi|121556462|gb|ABM60611.1| permease YjgP/YjgQ family protein [Verminephrobacter eiseniae
EF01-2]
Length = 372
Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/293 (11%), Positives = 95/293 (32%), Gaps = 12/293 (4%)
Query: 41 GELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQ 100
+ S S ++ V + I + + + R SE+VI A G +
Sbjct: 38 AARGSVSPSDVMLVMGFTVVGQLPTIASLSLFIAVVGTLSRMYRDSEMVIWFASGRGLAS 97
Query: 101 LLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ 160
L+ P + + + + ++ + L +++ D + + + SN +
Sbjct: 98 LVRPLLRFAWPVMLVIAVLSLLVWPWANAQIQQLKTRYEQRSDIDRIAPGEFQESSNGNR 157
Query: 161 DIFI---GAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYG 217
FI + + + A A + +L+
Sbjct: 158 VFFIDKGNPAPLAGNDAAQTGSNIFIAASDGRQESVTSARSARL-----QLQDGQRMAVL 212
Query: 218 RIPIDKNSTTLNIPIKMDGFQKFSEQFASRS---FYEIIKKMSFSNKSNIFHNYRAETQF 274
++ +K+ F ++ S ++ K +++ + +
Sbjct: 213 SDGQRLETSHDRPGLKISEFSEYVMHIGSAPPGAAEDLAVKTRATHELLLKSLPAYRAEL 272
Query: 275 YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ + + L + L+ +V+ R+ + + + +F+ + Y ++T+ +S
Sbjct: 273 GWRLGLVLAALNFVLLGLAVTSVNPRAARSTSM-LFALFAFIVYYNLMTLGQS 324
>gi|109947019|ref|YP_664247.1| hypothetical protein Hac_0413 [Helicobacter acinonychis str.
Sheeba]
gi|109714240|emb|CAJ99248.1| conserved hypothetical protein [Helicobacter acinonychis str.
Sheeba]
Length = 356
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 1/134 (0%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY F + F L + ++ L I + + + S L +P I I
Sbjct: 15 RYLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFI 73
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + L+ EL++ ++G+S ++ FV SIL+ ++ + +
Sbjct: 74 LPITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSILVSAILLVFSLVLIPT 133
Query: 127 GEKIGIDLIQQWKD 140
+ + Q KD
Sbjct: 134 SKSAYYGFLHQKKD 147
>gi|296448501|ref|ZP_06890381.1| permease YjgP/YjgQ family protein [Methylosinus trichosporium OB3b]
gi|296254000|gb|EFH01147.1| permease YjgP/YjgQ family protein [Methylosinus trichosporium OB3b]
Length = 387
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 47/141 (33%), Gaps = 4/141 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
MP +L+ Y + L + + V + L P
Sbjct: 1 MPRLLFTYLARRILFSMAVVQFALSVPVVLSYLLYTLTPAAIRAGLLAPALIG----TTP 56
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ +P V + F ++ + + A+ +S+W + P +V + + + +
Sbjct: 57 TVVYITLPMAIGVATALEFARMSSEGMIAVLYALRLSVWSVCRPAIVCAGAMVLIGYGLA 116
Query: 121 NPIATSGEKIGIDLIQQWKDN 141
N IA D+I ++
Sbjct: 117 NLIAPHYAGALQDVINVVRNT 137
>gi|307824320|ref|ZP_07654546.1| permease YjgP/YjgQ family protein [Methylobacter tundripaludum
SV96]
gi|307734700|gb|EFO05551.1| permease YjgP/YjgQ family protein [Methylobacter tundripaludum
SV96]
Length = 383
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/345 (12%), Positives = 114/345 (33%), Gaps = 27/345 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQM--GELPNYSISRGAVLAATRVPL 61
+L + L+T L ++++ I ++ G++ N ++ + +
Sbjct: 24 VLDKMVALDLLRTLLAVWSVIVVIIVSRQFIRILDRAVEGQVSNQTLMTVLG---LKTII 80
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+P + ++V + R E+ + G + + L + + +
Sbjct: 81 ASAAFLPAALFMAVLMVLGRMYRDQEMSAVASAGGGAGTVYRSIFLLVFPLSVLSAGLSF 140
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
++ E + +L+ Q K++ D + + Q D+ +KI + + E
Sbjct: 141 YVSPWAEAMMEELMHQDKESADLRGIAAGKF--SEYSQGDLVFYVEKIDDDKTMHE---V 195
Query: 182 ITIDKKNKIIHRKDADLAIIYN----DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
++ + +A++ + + + L+ Q ++
Sbjct: 196 FVQHRQGDRLAIINAEVGRLRDLPDGRYIVLENGERIQGQPGTVNYVLEQFTEYAVRMET 255
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
++ + F S ++ S + N + IP+ +V ++ IA ++
Sbjct: 256 KESAANFGKESVAS--GTLASSGQINDIA------ELQRRFSIPMGIVLLSFIAVPLAQM 307
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALI 342
R V + GF++Y +S ++ A +
Sbjct: 308 SPRGG-----VYGNMLVGFLIYFSYGNFIRVSQSWVMNQTIPAWL 347
>gi|312795337|ref|YP_004028259.1| hypothetical protein RBRH_03151 [Burkholderia rhizoxinica HKI 454]
gi|312167112|emb|CBW74115.1| Hypothetical membrane spanning protein [Burkholderia rhizoxinica
HKI 454]
Length = 365
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/351 (13%), Positives = 118/351 (33%), Gaps = 26/351 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL R + T L + LV + I VL + +
Sbjct: 2 ILERSLQRELAYTAGAVFLVLLTLVLTTMMIRIVG-FAASGQIDPRDVVVLIGLTMISYV 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V R SE+V+ + G+S+ +L+ P + + +
Sbjct: 61 AVMLIATLFVSILFVLTRWYRDSEMVVWLSCGVSLTRLIKPIATFAAPIVVLIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + ++++ + + + + + FI +K+ P+ E+ +T
Sbjct: 121 WPWANEQSKLIRERFQQRDEVSLLAPGQFRESAANHRVFFI--EKMSPDQGRVENV-FVT 177
Query: 184 IDKKNK--IIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ K ++ K I N V L+ Y D ++
Sbjct: 178 STENGKVNVVVSKTGHTEIHPNGDRFVVLENGRRYDGEPGKPDFRIMEFARYGVKIQSRQ 237
Query: 240 FSEQFASRSFY--EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + S ++++ + + +F + +PL + + L+A ++ +
Sbjct: 238 LVNRPTTTSLPTATLLREPNPT----------HLAEFAWRAGLPLTALNLMLLAIPLAYQ 287
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
R + +V + ++ +++++ + G + A +P +L +
Sbjct: 288 NPRRGRTINLVL-AVLIYLTYSNLMNLVQAWIEQGKV-----AFVPGLLGL 332
>gi|238028370|ref|YP_002912601.1| permease [Burkholderia glumae BGR1]
gi|237877564|gb|ACR29897.1| Permease, putative [Burkholderia glumae BGR1]
Length = 363
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/339 (13%), Positives = 116/339 (34%), Gaps = 23/339 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I S VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAAS-GQVSPKDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+ V + V R SE+V+ A G+S+ +L+ P V S + +
Sbjct: 61 AMILVGTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIRPIGVFSTPIVLLIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI +K+ P+ ++ +T
Sbjct: 121 WPWSNQQSKLIKARFQQRDEVSLLAPGQFRESTATHRVFFI--EKMSPDQARVQNV-FVT 177
Query: 184 IDKKNKI------IHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
++ K+ R + + + + L+ Y +P N + F
Sbjct: 178 TTEQGKVNIVVSQTGRVETEKN--GDRFIVLENGRRY--DGVPGQPNFKIMQ-------F 226
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET-QFYFLIVIPLMLVAMTLIAASVSL 296
+++ + S+ S S + + +F + +PL+ + + ++A ++
Sbjct: 227 ERYGVKIQSKQVVTQPTTTSTSTLELLRDPTKENLAEFAWRAGLPLIAINLMILAIPLAY 286
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ R + + + + ++ +++S + G L
Sbjct: 287 QNPRRGRT-VNLVMAVLIYLTYSNLLNVVQSQIERGKLP 324
>gi|119899193|ref|YP_934406.1| hypothetical protein azo2903 [Azoarcus sp. BH72]
gi|119671606|emb|CAL95519.1| conserved hypothetical membrane protein [Azoarcus sp. BH72]
Length = 359
Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/367 (12%), Positives = 118/367 (32%), Gaps = 33/367 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELP---NYSISRGAVLAATRVP 60
I R + + +T + ++ I L + Q + ++ A T +P
Sbjct: 2 IFRRALLREFSQTAAAVFVALFAILVTIVLIRLLGQAAGGGVPSDAVLALIGFGALTEMP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+++ + L+ R SE+V+ A G+ + + P + ++ + +
Sbjct: 62 VVLTLTLFVAVLL----TLSRSYRDSEMVVWFASGVPLTAWIGPVLRFALPVVAVIAGMT 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
++ + ++ + D Q+ + + + ++ F+
Sbjct: 118 LFLSPWAHMKNAEYRERLESRDDTQRVAPGVFRESAGSRRVFFVEVGAGEDGRVRN---- 173
Query: 181 SITIDKKNKIIHRKDADLAII-----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
D+ + A + N V L+K Y + +
Sbjct: 174 VFVSDENGDRLSVIAAAEGYLKTDEEGNRFVVLEKGRRYDGKPGTPEYRVMSFERYSVQI 233
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
++ + Q + + + R + + PL + + L+A +S
Sbjct: 234 EAKQAAAQPQRSRARPTEELLRS-------PDDRNLGELAGRVGTPLAALLLALLAIPLS 286
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS----GILLPVAAALIPVILTISLS 351
R+ + ++ + Y I + + G++ G L A L+P ++ + L
Sbjct: 287 FVNPRAGRTNNLLVA-----ILTYLIYSNAITIGQAWVAQGRLRFELAVLLPHLVVLGL- 340
Query: 352 ILILLQK 358
+ ++ K
Sbjct: 341 LALMFYK 347
>gi|167835784|ref|ZP_02462667.1| hypothetical protein Bpse38_04783 [Burkholderia thailandensis
MSMB43]
Length = 365
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/332 (11%), Positives = 106/332 (31%), Gaps = 25/332 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I + VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAAS-GEVNPKDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+ V + V + SE+V+ A G+S+ +L+ P V + + I
Sbjct: 61 AMILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI +K+ P+ ++ T
Sbjct: 121 WPWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFI--EKMSPDQAKVQNVFVTT 178
Query: 184 IDKKN-KIIHRKDADLAIIYND--KVKLKKVVEYQ--YGRIPI---DKNSTTLNIPIKMD 235
++ ++ + + N + L+ Y G+ + + I K
Sbjct: 179 TEQGKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQI 238
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q + ++ + + + +PL+ + + ++A ++
Sbjct: 239 VSQPTTTGTSTPDLLRNPTNQNLAEFAWRAG-------------LPLIAINLMILAIPLA 285
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ R + + + + ++ +++S
Sbjct: 286 YQNPRRGRT-VNLVMAVLIYLTYSNLLNVVQS 316
>gi|83721258|ref|YP_441378.1| permease [Burkholderia thailandensis E264]
gi|167580136|ref|ZP_02373010.1| permease, putative [Burkholderia thailandensis TXDOH]
gi|257139949|ref|ZP_05588211.1| permease, putative [Burkholderia thailandensis E264]
gi|83655083|gb|ABC39146.1| permease, putative [Burkholderia thailandensis E264]
Length = 365
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/340 (11%), Positives = 108/340 (31%), Gaps = 25/340 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I + VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAAS-GEVNPKDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+ V + V + SE+V+ A G+S+ +L+ P V + + I
Sbjct: 61 AMILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI +K+ P+ ++ T
Sbjct: 121 WPWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFI--EKMSPDQAKVQNVFVTT 178
Query: 184 IDKKN-KIIHRKDADLAIIYND--KVKLKKVVEYQ--YGRIPI---DKNSTTLNIPIKMD 235
+ ++ + + N + L+ Y G+ + + I K
Sbjct: 179 TEHGKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQV 238
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q + ++ + + + +PL+ + + ++A ++
Sbjct: 239 VSQPTTTGTSTPDLLRNPTNQNLAEFAWRAG-------------LPLIAINLMILAIPLA 285
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ R + + + + ++ +++S + G +
Sbjct: 286 YQNPRRGRT-VNLVMAVLIYLTYSNLLNVVQSQMERGKIP 324
>gi|237745416|ref|ZP_04575896.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
gi|229376767|gb|EEO26858.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
Length = 347
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/304 (13%), Positives = 107/304 (35%), Gaps = 31/304 (10%)
Query: 67 IPFITLVVNIV-VFFNLNRT---SELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+P I ++ V V + R+ SE+V+ A G+S+ + L P + ++ + + L+
Sbjct: 32 MPIILILTGFVSVLLVVTRSYQDSEMVVWFASGLSLTRWLRPVMEFALPIVVLVTLLGFF 91
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + ++++ + + I P + +K+ + ++ I
Sbjct: 92 ATPWAYRQSAEYRERFEKR--EDIARISPGKFQESAAAQRVFFVEKMSEDLSKVKNV-FI 148
Query: 183 TIDKKNKIIHRKDADLAIIYND-----KVKLKKVVEY--QYGRIPIDKNSTTLNIPIKMD 235
+ KI + + V L+ + Y +
Sbjct: 149 NSSRNGKITTVVS-QNGTLETNEKGEKFVVLEDGIRYDETPDQSDFRIMEFEKYTAYIAP 207
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ ++RS + + ++ + + I +P M + L+A +
Sbjct: 208 KGEVTISDISTRSMTTL-ELVTDTTSKKLGELVW-------RIGLPFMATLLMLLAIPLG 259
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA---ALIPVILTISLSI 352
R+ + ++ +LY + + SF ++ + A A P+ L+++L I
Sbjct: 260 FVNPRAGRSFNLIIA-----VLLYMTYSNLSSFIQAYVAQQKLAFGLAWWPLHLSVALVI 314
Query: 353 LILL 356
++L
Sbjct: 315 VLLF 318
>gi|34557088|ref|NP_906903.1| hypothetical protein WS0675 [Wolinella succinogenes DSM 1740]
gi|34482803|emb|CAE09803.1| conserved hypothetical protein [Wolinella succinogenes]
Length = 345
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
G L +Y F + + + VI +I + + S L +P +
Sbjct: 2 GNLKKYLFGSFAQLFFPIFAVLFFISSVILFIKIAG-VTFVVKMSFGELFELYLYSLPTM 60
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQL 101
I IP +++ L++ EL + ++GI +
Sbjct: 61 IFFTIPVTFFSASVISLAKLSQEYELPVLFSLGIDPLRF 99
>gi|78067267|ref|YP_370036.1| YjgP/YjgQ like transporter [Burkholderia sp. 383]
gi|77968012|gb|ABB09392.1| YjgP/YjgQ like transporter [Burkholderia sp. 383]
Length = 363
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/327 (11%), Positives = 101/327 (30%), Gaps = 16/327 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAAS-GEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V R SE+V+ A G+S+ +L+ P V + + +
Sbjct: 61 AVMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI TS
Sbjct: 121 WPWSNQQSKMIKARFQQRDEISLLAPGQFRESATNHRVFFIEKMTPDQSKVQNVFVTSTE 180
Query: 184 IDKKNKIIHRKDADLAIIYNDKVKLKKVVEY--QYGRIPID-KNSTTLNIPIKMDGFQKF 240
K N ++ + + V L+ Y G+ + I
Sbjct: 181 NGKVNVVVSQTGHTETRDGSRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSTPVTNV 240
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
++ ++++ + N + +F + +PL+ + + ++ +S + R
Sbjct: 241 PTTNSTP-TPDLLRNPTNDNLA----------EFAWRAGLPLIAINLMVLGIPLSYQNPR 289
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKS 327
++ I + + ++ +++S
Sbjct: 290 RSRT-INLVMAVLIYLTYSNLLNVVQS 315
>gi|186476977|ref|YP_001858447.1| permease YjgP/YjgQ family protein [Burkholderia phymatum STM815]
gi|184193436|gb|ACC71401.1| permease YjgP/YjgQ family protein [Burkholderia phymatum STM815]
Length = 370
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/333 (12%), Positives = 107/333 (32%), Gaps = 27/333 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + LV + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVG-FAASGEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V + SE+V+ A G+S+ + + P V + + I +
Sbjct: 61 AIMLVATLFVSILFVLTRWYKDSEMVVWLASGVSLARFIRPIGVFATPIIILIAFFVFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI +K+ P+ E+ +T
Sbjct: 121 WPWSNQQSKLIRARFQQRDEVSLLAPGQFRESAASHRVFFI--EKMSPDQGHVENV-FVT 177
Query: 184 IDKKNK--IIHRKDADLAIIYND--KVKLKKVVEY--QYGRIPI---DKNSTTLNIPIKM 234
+ K ++ K+ N V L+ Y + G + + I +
Sbjct: 178 STENGKVNVVVSKNGHTETHKNGDRFVVLENGRRYDGEPGHPDFRIMEFERYGVKIQSQP 237
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + + + + + + +PL+ + + L+A +
Sbjct: 238 VVSTPTTTGTPTLDLFRDPTRQNLAEFAWRAG-------------LPLIAINLMLLAIPL 284
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ + R ++ I + + ++ +++S
Sbjct: 285 AHQNPRRSRT-INLVMAVLIYLTYSNLLNVVQS 316
>gi|91782195|ref|YP_557401.1| membrane protein, YjgP/YjgQ like [Burkholderia xenovorans LB400]
gi|91686149|gb|ABE29349.1| membrane protein, YjgP/YjgQ like protein [Burkholderia xenovorans
LB400]
Length = 365
Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 47/363 (12%), Positives = 118/363 (32%), Gaps = 40/363 (11%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + LV + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVG-FAASGEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V + SE+V+ + G+S+ Q + P + + + I + +
Sbjct: 61 AIMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS-- 181
+ + +++ + + + + + FI +K+ P+ E+
Sbjct: 121 WPWSNQQSKLIRARFQQRDEVSLLAPGQFRESATSHRVFFI--EKMSPDQARVENVFVTS 178
Query: 182 -------ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ + K RK+ + V L+ Y D ++
Sbjct: 179 TENGKVNVVVSKTGHTETRKN------GDRFVVLENGRRYDGQPGQPDF---------RI 223
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET-QFYFLIVIPLMLVAMTLIAAS 293
F+++ + S+ + + + +F + +PL+ + + L+A
Sbjct: 224 MEFERYGVKIQSQPVVNTPTTTGTPTLTLLRNPTDDNLAEFAWRAGLPLIALNLMLLAIP 283
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS----------FGKSGILLPVAAALIP 343
++ + R ++ I + + ++ +++S G G L + AA++
Sbjct: 284 LAHQNPRRSRT-INLVMAVLIYLTYSNLLNVVQSWIEQGKMSFPVGLVG-LHVIVAAIVA 341
Query: 344 VIL 346
I
Sbjct: 342 FIF 344
>gi|225024725|ref|ZP_03713917.1| hypothetical protein EIKCOROL_01611 [Eikenella corrodens ATCC
23834]
gi|224942520|gb|EEG23729.1| hypothetical protein EIKCOROL_01611 [Eikenella corrodens ATCC
23834]
Length = 370
Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/195 (10%), Positives = 61/195 (31%), Gaps = 3/195 (1%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
R F K +T + + + + + ++ + + ++A V ++ +
Sbjct: 5 RKFIKEVSQTAMGVFVLLLATLVAVQAVKLLGGAAGGKVAADAVATLVAFWTV-ALMPIV 63
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+ + + V R SE+ + + G+S++ + P + ++ + T LV +
Sbjct: 64 LILTAYISALTVLSRYWRDSEMAVWLSSGLSLYGWIRPLMAFAVPFALLTALVSMLVMPW 123
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
+ + + K D Q +K + + +
Sbjct: 124 ADARSREFAEVLKRRQDTSMVRPGV-FQEFGGSTPRVYFVEKFDAGSGEAANLFIREQNP 182
Query: 187 KNKIIHRKDADLAII 201
+ + A+
Sbjct: 183 QGR-DTLITAERGRF 196
>gi|254247471|ref|ZP_04940792.1| hypothetical protein BCPG_02269 [Burkholderia cenocepacia PC184]
gi|124872247|gb|EAY63963.1| hypothetical protein BCPG_02269 [Burkholderia cenocepacia PC184]
Length = 364
Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/333 (10%), Positives = 105/333 (31%), Gaps = 27/333 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAAS-GEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V R SE+V+ A G+S+ +L+ P V + + +
Sbjct: 61 AVMLVVTLFVSILFVLTRRYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLITFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI +K+ P+ ++ +T
Sbjct: 121 WPWSNQQSKMIRARFQQRDEISLLAPGQFRESAANHRVFFI--EKMSPDQSKVQNV-FVT 177
Query: 184 IDKKNKIIHRK----DADLAIIYNDKVKLKKVVEY--QYGRIPI---DKNSTTLNIPIKM 234
+ K+ + + + V L+ Y G+ + + I K
Sbjct: 178 STENGKVNVVVSQTGHTETSKDGDRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSKP 237
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASV 294
+ + + + + + + +PL+ + + ++ +
Sbjct: 238 VTNVQTTNSTPTPDLLRNPTRDNLAEFAWRAG-------------LPLIAINLMVLGIPL 284
Query: 295 SLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
S + R ++ I + + ++ ++++
Sbjct: 285 SYQNPRRSRT-INLVMAVLIYLTYSNLLNVVQA 316
>gi|323525104|ref|YP_004227257.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1001]
gi|323382106|gb|ADX54197.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1001]
Length = 365
Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/329 (12%), Positives = 113/329 (34%), Gaps = 19/329 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + LV + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVG-FAAQGEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V + SE+V+ + G+S+ Q + P + + + I + +
Sbjct: 61 AIMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGMFATPIVILIMFFVFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + ++ + FI +K+ P+ E+ +T
Sbjct: 121 WPWSNQQSKLIRARFQQRDEVSLLAPGQFRESASTHRVFFI--EKMSPDQGHVENV-FVT 177
Query: 184 IDKKNK--IIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ K ++ K+ N V L+ Y+ D ++ F++
Sbjct: 178 STENGKVNVVVSKNGHTETHKNGDRFVVLENGRRYEGEPGHPDF---------RIMEFER 228
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET-QFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S+ + + + +F + +PL+ + + L+A ++ +
Sbjct: 229 YGVKIESQPVVNTPTTTGTPTLTLLRNPTNENLAEFAWRAGLPLIAINLMLLAIPLAHQN 288
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R ++ I + + ++ +++S
Sbjct: 289 PRRSRT-INLVMAVLIYLTYSNLLNVVQS 316
>gi|299065988|emb|CBJ37169.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
solanacearum CMR15]
Length = 372
Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/353 (10%), Positives = 102/353 (28%), Gaps = 17/353 (4%)
Query: 10 FKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPF 69
+ L T + ++ + L M S + +L + ++
Sbjct: 7 LRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLAALGYLAILLCA 66
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
+ ++V + SE+V+ G+S+ + P + S+ + L+ +
Sbjct: 67 TLFISVLLVLTRWYKDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVGLLALFGWPWANQ 126
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
+++ + I + + + + + + +
Sbjct: 127 QSALFRDRFEQRDVLSMISAGRF--IEPAHGNYVLFIEGVDAGMKHARN--LFVANAEQD 182
Query: 190 IIHRKDADLAIIYND-----KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
I A V L K Y+ P + + Q
Sbjct: 183 KIGVALAKTGEFKAGPNGDRYVVLDKGRRYE--GTPGQLDYRIVEFDRYGVKVANKPPQA 240
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQP 304
+ + K + + + + I +PL+ + LIA ++ R +
Sbjct: 241 DA----NLPTKSRPTTELLSNPTPENLGELVWRIGLPLLALNFVLIAIPLAYVNPRLGRY 296
Query: 305 RIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
++ + ++ + +++ G + + A P+ L + +L +
Sbjct: 297 TPMIF-AVLIYLTYSNLLNLSQAWVAQGKMSAMLA-WWPIHLAAFVCAALLFR 347
>gi|296162276|ref|ZP_06845070.1| permease YjgP/YjgQ family protein [Burkholderia sp. Ch1-1]
gi|295887430|gb|EFG67254.1| permease YjgP/YjgQ family protein [Burkholderia sp. Ch1-1]
Length = 365
Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 47/363 (12%), Positives = 118/363 (32%), Gaps = 40/363 (11%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + LV + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVG-FAASGEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V + SE+V+ + G+S+ Q + P + + + I + +
Sbjct: 61 AIMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS-- 181
+ + +++ + + + + + FI +K+ P+ E+
Sbjct: 121 WPWSNQQSKLIRARFQQRDEVSLLAPGQFRESATSHRVFFI--EKMSPDQARVENVFVTS 178
Query: 182 -------ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+ + K RK+ + V L+ Y D ++
Sbjct: 179 TENGKVNVVVSKTGHTETRKN------GDRFVVLENGRRYDGQPGQPDF---------RI 223
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET-QFYFLIVIPLMLVAMTLIAAS 293
F+++ + S+ + + + +F + +PL+ + + L+A
Sbjct: 224 MEFERYGVKIQSQPVVNTPTTTGTPTLTLLRNPTNDNLAEFAWRAGLPLIALNLMLLAIP 283
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS----------FGKSGILLPVAAALIP 343
++ + R ++ I + + ++ +++S G G L + AA++
Sbjct: 284 LAHQNPRRSRT-INLVMAVLIYLTYSNLLNVVQSWIEQGKMSFPVGLVG-LHVIVAAIVA 341
Query: 344 VIL 346
I
Sbjct: 342 FIF 344
>gi|15834846|ref|NP_296605.1| hypothetical protein TC0226 [Chlamydia muridarum Nigg]
gi|270285012|ref|ZP_06194406.1| hypothetical protein CmurN_01128 [Chlamydia muridarum Nigg]
gi|270289035|ref|ZP_06195337.1| hypothetical protein CmurW_01183 [Chlamydia muridarum Weiss]
gi|301336410|ref|ZP_07224612.1| hypothetical protein CmurM_01205 [Chlamydia muridarum MopnTet14]
gi|7190265|gb|AAF39098.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
Length = 366
Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 53/387 (13%), Positives = 126/387 (32%), Gaps = 66/387 (17%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGE--LPNYSISRGAVLAATRVPL 61
I RY + + A+I I + + G+ + + + +++ L
Sbjct: 3 IWKRYILARFWLSLSSLFFLAVIFYASIHHSLHAFREGKTAIAGAPLQLSLLYYLSQISL 62
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ I+P + + + + F++ E+++ +A G+S+ ++ P ++ S L+ +
Sbjct: 63 KAEFILPQLVAIASTITLFSMQSKREILLLQASGLSLKTVIRPLILSSTLVTLLLYANFQ 122
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ EKI I K ++ + IP + +D T
Sbjct: 123 WLHPICEKISITKEHMDK-GTLEKAQEKIPAL---------------------YLKDQTV 160
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
+ N A + N Y ++ S + + + +
Sbjct: 161 LIFSSINH-------KAATLNNVFWIKGPKTIYSIKKLAFTTPSLPIGLEVSYFSEDENH 213
Query: 242 EQ-----FASRSFYEIIKKMSFSNKSNIFHNYR--------------------------- 269
E F + F E+ + S IF R
Sbjct: 214 EISLTQFFDMKEFPELEFSYYDNPFSKIFITGRDCSFSAFFQAIPWHAAKFGLLTTVPQR 273
Query: 270 ---AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
T FY++++ PL+ +A +++A + L F R + + + + + +
Sbjct: 274 ILSLLTLFYYMLISPLLCIASVILSAYLCLRFHRLPKITWAYLVPLGTINIFFVFLKAGM 333
Query: 327 SFGKSGILLPVAAALIPVILTISLSIL 353
+ +L + IP + + +++
Sbjct: 334 VLANNSVLPALQVMFIPASVMLIITLY 360
>gi|326796829|ref|YP_004314649.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
gi|326547593|gb|ADZ92813.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
Length = 369
Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 55/361 (15%), Positives = 117/361 (32%), Gaps = 23/361 (6%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+RY K L +T L ++++ + E S ++ VP IQ
Sbjct: 3 LFRYLAKEVLVSTAGVTLILLLIILSGRFVNYLGRAAE-GKMSFEFLFIILGFHVPSFIQ 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I+P + ++ + L +E+ I + GIS +L + + LL + + V ++
Sbjct: 62 MILPLAFFLSLLLAYGRLYIENEMSILFSSGISKVKLTVYTLGIAGLLTLTSAFVNFWLS 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
E Q+ D I + Q A PE +
Sbjct: 122 PYSEYQAELARQE---QDQLTAFDFIQPGRFQGRGQQTTYVA-SFTPEEGWMNNIFLSDF 177
Query: 185 DKKNK---IIHRK--DADLAIIYN----DKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+KN + +A+ + + + K V Y+ P N +
Sbjct: 178 VRKNGRDIPVQTIAKNAEQIRLETEGGLNYLIFKDGVRYE--GTPGAANYRIMEFDTYAI 235
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
+ + Y + F++ N + + ++ I + +M+ + +I S+S
Sbjct: 236 RLEDKAPG-TIDKAYAVPTTALFNS-----DNPKYIAELHWRIALVIMIPILAIIGVSLS 289
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
R + + I + ++ K+ + G + ++ L+
Sbjct: 290 QVNPRQGRFFKM-LPAILLMIVYLGLLIWGKTALEKGKIPLHLGLWWAHGTFAIIAYLLF 348
Query: 356 L 356
L
Sbjct: 349 L 349
>gi|330813916|ref|YP_004358155.1| putative permease YjgP/YjgQ family protein [Candidatus Pelagibacter
sp. IMCC9063]
gi|327487011|gb|AEA81416.1| putative permease YjgP/YjgQ family protein [Candidatus Pelagibacter
sp. IMCC9063]
Length = 358
Score = 50.2 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 44/293 (15%), Positives = 103/293 (35%), Gaps = 22/293 (7%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L YF L++ + L L+++ + ++ S+S ++P I+
Sbjct: 6 LNNYFIAEILRSYAFVLATLSFLIWIAQSARFLYLITDM-GLSMSVYVPYILYQLPKIVS 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
Q++ L+ + E+ I G+S ++ + S++ + +A
Sbjct: 65 QMMLISFLISLFISIIKFQNNKEMEIYWLSGVSKKTIVWTILKISLVPTFVAFFLYIYLA 124
Query: 125 TSGEKIGIDLIQQWK---DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
I +++ + N +K++ + N + + E +
Sbjct: 125 PMTGLISRNILANSEFTFVNALVKKNNFNSPFR--NLTVYVGENDNRGNLEKVYLFENNK 182
Query: 182 ITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTL----NIPIKMDGF 237
I K+ K+++ + + + + + K + G+I I K TL + +
Sbjct: 183 TIIAKQGKVLNVDNKNYLQLIDGFIHQKN----KNGKIQIIKFEETLYDFTKYKSNLTTY 238
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
K E+ F E+ K + K+N + + I PL + + L+
Sbjct: 239 PKLQERSLLWLFNEL--KNNRKEKNNTIF------EIHKRIFKPLFIPIIALL 283
>gi|167618242|ref|ZP_02386873.1| permease, putative [Burkholderia thailandensis Bt4]
Length = 365
Score = 50.2 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/340 (11%), Positives = 108/340 (31%), Gaps = 25/340 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I + VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAAS-GEVNPKDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+ V + V + SE+V+ A G+S+ +L+ P V + + I
Sbjct: 61 AMILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI +K+ P+ ++ T
Sbjct: 121 WPWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFI--EKMSPDQAKVQNVFVTT 178
Query: 184 IDKKN-KIIHRKDADLAIIYND--KVKLKKVVEYQ--YGRIPI---DKNSTTLNIPIKMD 235
+ ++ + + N + L+ Y G+ + + I K
Sbjct: 179 TEHGKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQNKQV 238
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q + ++ + + + +PL+ + + ++A ++
Sbjct: 239 VSQPTTTGTSTPDLLRNPTNQNLAEFAWRAG-------------LPLIAINLMILAIPLA 285
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ R + + + + ++ +++S + G +
Sbjct: 286 YQNPRRGRT-VNLVMAVLIYLTYSNLLNVVQSQMERGKIP 324
>gi|313668051|ref|YP_004048335.1| hypothetical protein NLA_7130 [Neisseria lactamica ST-640]
gi|313005513|emb|CBN86949.1| conserved hypothetical integral membrane protein [Neisseria
lactamica 020-06]
Length = 392
Score = 50.2 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/265 (11%), Positives = 81/265 (30%), Gaps = 5/265 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L + +
Sbjct: 23 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWIIGMT 81
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 82 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 141
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 142 MPWAELRSREYAEILKQKQELSLVEAGRFNTLGKRNGRVY-FVETFDTESGIMKNLFLRE 200
Query: 184 IDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + A + N+K L+ Y+Y P + ++
Sbjct: 201 QDKNGN-DNIIFAKEGNFSLNNNKRALELRDGYRYSGTPGKADYNRVSFRHLSLIISTTP 259
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 260 KLIDPVSHRRTIPTAQLIGSSNPQH 284
>gi|295917939|gb|ADG60246.1| permease YjgP/YjgQ [uncultured bacterium]
Length = 122
Score = 50.2 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
+ RY + L + A L+ + + + + + + VP
Sbjct: 22 IDRYILRLVLVPMFGVFILAASLLMLEKMLRLFEFVSTQGG-PVQVVFRMLVNLVPEYAG 80
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLL 102
IP ++ ++ F L +SEL + RA+G+S +LL
Sbjct: 81 LAIPLGLMLGILLAFRKLATSSELDVMRAVGMSYSRLL 118
>gi|167718522|ref|ZP_02401758.1| hypothetical protein BpseD_05837 [Burkholderia pseudomallei DM98]
Length = 365
Score = 50.2 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/332 (11%), Positives = 105/332 (31%), Gaps = 25/332 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I + VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAAS-GEVNPKDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+ V + V + SE+V+ A G+S+ +L+ P V + + I
Sbjct: 61 AMILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI +K+ P+ ++ T
Sbjct: 121 WPWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFI--EKMSPDQAKVQNVFVTT 178
Query: 184 IDKKN-KIIHRKDADLAIIYND--KVKLKKVVEYQ--YGRIPI---DKNSTTLNIPIKMD 235
+ ++ + + N + L+ Y G+ + + I K
Sbjct: 179 TEHGKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQI 238
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q + ++ + + + +PL+ + + ++A ++
Sbjct: 239 VSQPTTTGTSTPDLLRNPTNQNLAEFAWRAG-------------LPLIAINLMILAIPLA 285
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ R + + + + ++ +++S
Sbjct: 286 YQNPRRGRT-VNLVMAVLIYLTYSNLLNVVQS 316
>gi|237811281|ref|YP_002895732.1| permease YjgP/YjgQ family protein [Burkholderia pseudomallei
MSHR346]
gi|254181440|ref|ZP_04888037.1| putative membrane protein [Burkholderia pseudomallei 1655]
gi|184211978|gb|EDU09021.1| putative membrane protein [Burkholderia pseudomallei 1655]
gi|237503123|gb|ACQ95441.1| permease YjgP/YjgQ family protein [Burkholderia pseudomallei
MSHR346]
Length = 365
Score = 50.2 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/332 (11%), Positives = 106/332 (31%), Gaps = 25/332 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I + VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAAS-GEVNPKDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+ V + V + SE+V+ A G+S+ +L+ P V + + I
Sbjct: 61 AMILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI +K+ P+ ++ T
Sbjct: 121 WPWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFI--EKMSPDQAKVQNVFVTT 178
Query: 184 IDKKN-KIIHRKDADLAIIYND--KVKLKKVVEYQ--YGRIPI---DKNSTTLNIPIKMD 235
++ ++ + + N + L+ Y G+ + + I K
Sbjct: 179 TEQGKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQI 238
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q + ++ + + + +PL+ + + ++A ++
Sbjct: 239 VSQPTTTGTSTPDLLRNPTNQNLAEFAWRAG-------------LPLIAINLMILAIPLA 285
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ R + + + + ++ +++S
Sbjct: 286 YQNPRRGRT-VNLVMAVLIYLTYSNLLNVVQS 316
>gi|207092118|ref|ZP_03239905.1| hypothetical protein HpylHP_03688 [Helicobacter pylori
HPKX_438_AG0C1]
Length = 272
Score = 50.2 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S ++ FV S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|53718606|ref|YP_107592.1| putative permease [Burkholderia pseudomallei K96243]
gi|53725611|ref|YP_102446.1| permease [Burkholderia mallei ATCC 23344]
gi|67640815|ref|ZP_00439609.1| permease YjgP/YjgQ family protein [Burkholderia mallei GB8 horse 4]
gi|76811087|ref|YP_332585.1| permease [Burkholderia pseudomallei 1710b]
gi|121601060|ref|YP_993649.1| hypothetical protein BMASAVP1_A2340 [Burkholderia mallei SAVP1]
gi|124383987|ref|YP_001028889.1| hypothetical protein BMA10229_A2945 [Burkholderia mallei NCTC
10229]
gi|126450363|ref|YP_001081198.1| hypothetical protein BMA10247_1654 [Burkholderia mallei NCTC 10247]
gi|126453581|ref|YP_001065301.1| hypothetical protein BURPS1106A_1021 [Burkholderia pseudomallei
1106a]
gi|134281291|ref|ZP_01768000.1| putative membrane protein [Burkholderia pseudomallei 305]
gi|167003639|ref|ZP_02269425.1| putative membrane protein [Burkholderia mallei PRL-20]
gi|167737554|ref|ZP_02410328.1| hypothetical protein Bpse14_05785 [Burkholderia pseudomallei 14]
gi|167814688|ref|ZP_02446368.1| hypothetical protein Bpse9_06062 [Burkholderia pseudomallei 91]
gi|167823142|ref|ZP_02454613.1| hypothetical protein Bpseu9_05663 [Burkholderia pseudomallei 9]
gi|167844706|ref|ZP_02470214.1| hypothetical protein BpseB_05398 [Burkholderia pseudomallei B7210]
gi|167893241|ref|ZP_02480643.1| hypothetical protein Bpse7_05715 [Burkholderia pseudomallei 7894]
gi|167901698|ref|ZP_02488903.1| hypothetical protein BpseN_05425 [Burkholderia pseudomallei NCTC
13177]
gi|167909937|ref|ZP_02497028.1| hypothetical protein Bpse112_05556 [Burkholderia pseudomallei 112]
gi|167917974|ref|ZP_02505065.1| hypothetical protein BpseBC_05423 [Burkholderia pseudomallei
BCC215]
gi|217419643|ref|ZP_03451149.1| putative membrane protein [Burkholderia pseudomallei 576]
gi|226194506|ref|ZP_03790104.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
gi|242317338|ref|ZP_04816354.1| putative membrane protein [Burkholderia pseudomallei 1106b]
gi|254177868|ref|ZP_04884523.1| putative membrane protein [Burkholderia mallei ATCC 10399]
gi|254190839|ref|ZP_04897346.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
gi|254196871|ref|ZP_04903295.1| putative membrane protein [Burkholderia pseudomallei S13]
gi|254199348|ref|ZP_04905714.1| putative membrane protein [Burkholderia mallei FMH]
gi|254205664|ref|ZP_04912016.1| putative membrane protein [Burkholderia mallei JHU]
gi|254258333|ref|ZP_04949387.1| putative membrane protein [Burkholderia pseudomallei 1710a]
gi|254357822|ref|ZP_04974095.1| putative membrane protein [Burkholderia mallei 2002721280]
gi|52209020|emb|CAH34960.1| putative permease protein [Burkholderia pseudomallei K96243]
gi|52429034|gb|AAU49627.1| permease, putative [Burkholderia mallei ATCC 23344]
gi|76580540|gb|ABA50015.1| permease, putative [Burkholderia pseudomallei 1710b]
gi|121229870|gb|ABM52388.1| putative membrane protein [Burkholderia mallei SAVP1]
gi|124292007|gb|ABN01276.1| putative membrane protein [Burkholderia mallei NCTC 10229]
gi|126227223|gb|ABN90763.1| putative membrane protein [Burkholderia pseudomallei 1106a]
gi|126243233|gb|ABO06326.1| putative membrane protein [Burkholderia mallei NCTC 10247]
gi|134247597|gb|EBA47682.1| putative membrane protein [Burkholderia pseudomallei 305]
gi|147748944|gb|EDK56018.1| putative membrane protein [Burkholderia mallei FMH]
gi|147753107|gb|EDK60172.1| putative membrane protein [Burkholderia mallei JHU]
gi|148026949|gb|EDK84970.1| putative membrane protein [Burkholderia mallei 2002721280]
gi|157938514|gb|EDO94184.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
gi|160698907|gb|EDP88877.1| putative membrane protein [Burkholderia mallei ATCC 10399]
gi|169653614|gb|EDS86307.1| putative membrane protein [Burkholderia pseudomallei S13]
gi|217396947|gb|EEC36963.1| putative membrane protein [Burkholderia pseudomallei 576]
gi|225933591|gb|EEH29580.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
gi|238521610|gb|EEP85060.1| permease YjgP/YjgQ family protein [Burkholderia mallei GB8 horse 4]
gi|242140577|gb|EES26979.1| putative membrane protein [Burkholderia pseudomallei 1106b]
gi|243060865|gb|EES43051.1| putative membrane protein [Burkholderia mallei PRL-20]
gi|254217022|gb|EET06406.1| putative membrane protein [Burkholderia pseudomallei 1710a]
Length = 365
Score = 50.2 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/332 (11%), Positives = 105/332 (31%), Gaps = 25/332 (7%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I + VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAAS-GEVNPKDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+ V + V + SE+V+ A G+S+ +L+ P V + + I
Sbjct: 61 AMILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI +K+ P+ ++ T
Sbjct: 121 WPWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFI--EKMSPDQAKVQNVFVTT 178
Query: 184 IDKKN-KIIHRKDADLAIIYND--KVKLKKVVEYQ--YGRIPI---DKNSTTLNIPIKMD 235
+ ++ + + N + L+ Y G+ + + I K
Sbjct: 179 TEHGKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQI 238
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295
Q + ++ + + + +PL+ + + ++A ++
Sbjct: 239 VSQPTTTGTSTPDLLRNPTNQNLAEFAWRAG-------------LPLIAINLMILAIPLA 285
Query: 296 LEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ R + + + + ++ +++S
Sbjct: 286 YQNPRRGRT-VNLVMAVLIYLTYSNLLNVVQS 316
>gi|291045045|ref|ZP_06570753.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|291011048|gb|EFE03045.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
Length = 384
Score = 50.2 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/267 (11%), Positives = 82/267 (30%), Gaps = 5/267 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I R K T + + + ++ + + + +I L V
Sbjct: 13 FMIYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIG 71
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ + + V R SE+ + + G+++ Q ++P + ++ I ++
Sbjct: 72 MTPLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWISPVMQFAVPFAILIAVMQL 131
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E + + K + + + + ++ + E+ I ++
Sbjct: 132 WVIPWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVY-FVETFDTESGIMKNLFL 190
Query: 182 ITIDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
DK + A + ++K L+ Y+Y P + ++
Sbjct: 191 REQDKNGG-DNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIIST 249
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 250 TPKLIDPVSHRRTISTAQLIGSSNPQH 276
>gi|170692022|ref|ZP_02883186.1| permease YjgP/YjgQ family protein [Burkholderia graminis C4D1M]
gi|170143306|gb|EDT11470.1| permease YjgP/YjgQ family protein [Burkholderia graminis C4D1M]
Length = 365
Score = 50.2 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 46/358 (12%), Positives = 122/358 (34%), Gaps = 30/358 (8%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + LV + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVG-FAAQGEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V + SE+V+ + G+S+ + + P + + + I +
Sbjct: 61 AIMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTRFIKPIGMFATPIIILICFFVFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + ++ + FI +K+ P+ E+ +T
Sbjct: 121 WPWSNQQSKMIRARFQQRDEVSLLAPGQFRESASSHRVFFI--EKMSPDQGHVENV-FVT 177
Query: 184 IDKKNK--IIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ K ++ K+ N V L+ Y+ D ++ F++
Sbjct: 178 STENGKVNVVVSKNGHTETHKNGDRFVVLENGRRYEGEPGHPDF---------RIMEFER 228
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET-QFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S+ + + + + +F + +PL+ + + L+A ++ +
Sbjct: 229 YGVKIESQPVVNTPTTTGTPTLTLLRNPTQVNLAEFAWRAGLPLIAINLMLLAIPLAHQN 288
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMK----------SFGKSGILLPVAAALIPVIL 346
R ++ I + + ++ +++ + G IL + AA++ I
Sbjct: 289 PRRSRT-INLVMAVLIYLTYSNLLNVVQSWIEQGKMSFALGLV-ILHVIVAAIVAFIF 344
>gi|307728896|ref|YP_003906120.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1003]
gi|307583431|gb|ADN56829.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1003]
Length = 365
Score = 50.2 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 42/329 (12%), Positives = 112/329 (34%), Gaps = 19/329 (5%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + LV + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVG-FAAQGEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V + SE+V+ + G+S+ Q + P + + + I + +
Sbjct: 61 AIMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGMFATPIIILIMFFVFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI +K+ P+ E+ +T
Sbjct: 121 WPWSNQQSKLIRARFQQRDEVSLLAPGQFRESAASHRVFFI--EKMSPDQGHVENV-FVT 177
Query: 184 IDKKNKI--IHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ K+ + K+ N V L+ Y P + + F++
Sbjct: 178 STENGKLNVVVSKNGHTETHKNGDRFVVLENGRRY--DGEPGHPDFRIME-------FER 228
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET-QFYFLIVIPLMLVAMTLIAASVSLEF 298
+ + S+ + + + + +F + +PL+ + + L+A ++ +
Sbjct: 229 YGVRIESQPVVNTPTTTGTPTLTLLRNPTKENLAEFAWRAGLPLIAINLMLLAIPLAHQN 288
Query: 299 SRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R ++ I + + ++ +++S
Sbjct: 289 PRRSRT-INLVMAVLIYLTYSNLLNVVQS 316
>gi|292572537|gb|ADE30452.1| Putative permease [Rickettsia prowazekii Rp22]
Length = 377
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 56/367 (15%), Positives = 138/367 (37%), Gaps = 22/367 (5%)
Query: 4 ILWR-YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L+R YF K L + +V++ + ++ + + L +P +
Sbjct: 19 LLYRKYFIKNILPLLIIVTFSVTSIVWITQILKLLYLFDK--GIKVIDFFNLVVLVLPTL 76
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++P IT++ + ++ NL +L+I + G++ QL P + ++ + + + +
Sbjct: 77 LFILLPIITVIAVLYIYNNLKVERQLIILQTSGVNNIQLALPALYVALTIMLLAYYISST 136
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + K+N S +I + ++I + K L +I
Sbjct: 137 ILPLSHINLKSRLNFIKNN---YISSMIEEKTFNKITKNITVFIDKKLT-GNIMNGIIIF 192
Query: 183 TIDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYG------RIPIDKNSTTLNIPI 232
+ A + N +L K + +Y ++ D L
Sbjct: 193 DNRNADNP-SVVFAGSGTLNIYGNNPIFELNKGLRQEYDANGNLTQLTFDSLMIKLQNNS 251
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ Q+ + +Y I + ++ S+ I + + + I+ PL + +A
Sbjct: 252 SLTS-QRTQNNKEANEYY-ISELLTPSHDLVITKKIKLIAEAHQRIIWPLYNFVLPCLAL 309
Query: 293 SVSLEFSRSNQPRII-VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+V L + S + + V + + + I I+++F L + A +++ +++
Sbjct: 310 AVFLRYPYSKKTTFMPVLFSALTVLFVTAIHFILQNFASKN-LDFIFACYFNLLVALTIG 368
Query: 352 ILILLQK 358
+ +L+ K
Sbjct: 369 LYLLVHK 375
>gi|319760185|ref|YP_004124123.1| putative permease [Candidatus Blochmannia vafer str. BVAF]
gi|318038899|gb|ADV33449.1| putative permease [Candidatus Blochmannia vafer str. BVAF]
Length = 371
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 56/138 (40%), Gaps = 3/138 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
IL RY K + L L+ ++ L +I +P Y + +P +
Sbjct: 2 ILIRYIIKEVFRNQLIILILLFLVCICQKLIKIVGVDNPIPVY---LIFLHLTLNIPELG 58
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
+ +IPF + + + + +E++ + I+ + + + SI++ I +++ + +
Sbjct: 59 KLVIPFSLFLSVFITCYRFHLHNEILAMYSCAINRFFFVKSIFLYSIIVFIISLINVMWL 118
Query: 124 ATSGEKIGIDLIQQWKDN 141
+ E++ + N
Sbjct: 119 SPYCEQLRYVTLSSINKN 136
>gi|33602710|ref|NP_890270.1| putative integral membrane protein [Bordetella bronchiseptica RB50]
gi|33577152|emb|CAE35709.1| putative integral membrane protein [Bordetella bronchiseptica RB50]
Length = 370
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/319 (12%), Positives = 111/319 (34%), Gaps = 7/319 (2%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ LAA + I+ + + R SE+V+ A G+S+ L
Sbjct: 42 GSIGADVVLGLAAFSTITALPTILAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWLR 101
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
P ++ + + + + + + ++++ D K + + + D
Sbjct: 102 PVARVAVPIAMLVAALTLVASPWAYRQIGEYRERFEQRSDLSKVTAGQFA--ESGRGDRV 159
Query: 164 IGAKKILPENHIWEDFTSITIDKKN-KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
A+ + + +ID + ++ +A + N L ++Y P
Sbjct: 160 FFAEDPVRPGDELGAVFARSIDPEWLSVLTASNARSETLPNGDRFLVLGEGHRYDLKPGT 219
Query: 223 KNSTTLNIP---IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
+N ++++ +R+ E K + + + + +Q + +
Sbjct: 220 PEIRLVNFDQYGVRLESKAGEDPMAEARAAAERSSKARSTMQLVQDNTDSSWSQIMWRVA 279
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
+PL + + L+A + R + ++ G G + +I + +++ SG +
Sbjct: 280 MPLAALNLALLAIPLGAVNPRLGRSGDLLIAG-LVGLLYMNMINLSRAWISSGKISFSIG 338
Query: 340 ALIPVILTISLSILILLQK 358
+ L+ +L+++
Sbjct: 339 VWAVHAVVALLAAYLLMRR 357
>gi|295675785|ref|YP_003604309.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1002]
gi|295435628|gb|ADG14798.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1002]
Length = 365
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 40/327 (12%), Positives = 105/327 (32%), Gaps = 15/327 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + LV + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVG-FAASGEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V + SE+V+ + G+S+ Q + P + + + I + +
Sbjct: 61 AIMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI +K+ P+ E+ +
Sbjct: 121 WPWSNQQSKLIRARFQQRDEVSLLAPGQFRESPSTHRVFFI--EKMSPDQGHVENVFVTS 178
Query: 184 IDKKN-KIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ ++ K+ + N V L+ Y D Q
Sbjct: 179 TEGGKVNVVVSKNGHVETHKNGDRFVVLENGRRYDGEPGHPDFRIMEFERYGVKIQSQPV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + +N++ +RA PL+ + + L+A ++ + R
Sbjct: 239 VNTPTTTGLPTMTLLRNPTNENLAEFAWRAGL--------PLIAINLMLLAIPLAHQNPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKS 327
++ I + + ++ ++++
Sbjct: 291 RSRT-INLVMAVLIYLTYSNLLNVVQA 316
>gi|330818019|ref|YP_004361724.1| Permease, putative [Burkholderia gladioli BSR3]
gi|327370412|gb|AEA61768.1| Permease, putative [Burkholderia gladioli BSR3]
Length = 363
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/334 (12%), Positives = 108/334 (32%), Gaps = 13/334 (3%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I S VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAAS-GQVSPKDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+ V + V + SE+V+ A G+S+ +L+ P V + + +
Sbjct: 61 AMILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI T+
Sbjct: 121 WPWSNQQSKLIKARFQQRDEVSLLAPGQFRESPSTNRVFFIEKMSADQAAVQNVFVTTTE 180
Query: 184 IDKKNKIIHRK-DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
K N ++ + + A + + L+ Y +P N + F+++
Sbjct: 181 QGKVNVVVSQTGHTETAQNGDRFIVLENGRRY--DGVPGQPNFKIMQ-------FERYGV 231
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAET-QFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S+ S + +F + + +PL+ + + ++A ++ + R
Sbjct: 232 KIQSKQVVTQPTTTSTPTLDLLRDPTDENLAEFAWRVGLPLIAINLMILAIPLAYQNPRR 291
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
+ + + + ++ +M+S + G +
Sbjct: 292 GRT-VNLVMAVLIYLTYSNLLNVMQSQIERGKIP 324
>gi|240113703|ref|ZP_04728193.1| hypothetical protein NgonM_09082 [Neisseria gonorrhoeae MS11]
gi|268599771|ref|ZP_06133938.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268583902|gb|EEZ48578.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
Length = 396
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/267 (11%), Positives = 81/267 (30%), Gaps = 5/267 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I R K T + + + ++ + + + +I L V
Sbjct: 25 FMIYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIG 83
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ + + V R SE+ + + G+++ Q + P + ++ I ++
Sbjct: 84 MTPLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQL 143
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E + + K + + + + ++ + E+ I ++
Sbjct: 144 WVIPWAELRNREYAEILKQKQELSLVEAGEFNNLGKRNGRVY-FVETFDTESGIMKNLFL 202
Query: 182 ITIDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
DK + A + ++K L+ Y+Y P + ++
Sbjct: 203 REQDKNGG-DNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIIST 261
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 262 TPKLIDPVSHRRTISTAQLIGSSNPQH 288
>gi|33597808|ref|NP_885451.1| putative integral membrane protein [Bordetella parapertussis 12822]
gi|33574237|emb|CAE38569.1| putative integral membrane protein [Bordetella parapertussis]
Length = 370
Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/319 (12%), Positives = 111/319 (34%), Gaps = 7/319 (2%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ LAA + I+ + + R SE+V+ A G+S+ L
Sbjct: 42 GSIGADVVLGLAAFSTITALPTILAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWLR 101
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
P ++ + + + + + + ++++ D K + + + D
Sbjct: 102 PVARVAVPIAMLVAALTLVASPWAYRQIGEYRERFEQRSDLSKVTAGQFA--ESGRGDRV 159
Query: 164 IGAKKILPENHIWEDFTSITIDKKN-KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
A+ + + +ID + ++ +A + N L ++Y P
Sbjct: 160 FFAEDPVRPGDELGAVFARSIDPEWLSVLTASNARSETLPNGDRFLVLGEGHRYDLKPGT 219
Query: 223 KNSTTLNIP---IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
+N ++++ +R+ E K + + + + +Q + +
Sbjct: 220 PEIRLVNFDQYGVRLESKAGEDPMAEARAAAERFSKARSTMQLVQDNTDSSWSQIMWRVA 279
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
+PL + + L+A + R + ++ G G + +I + +++ SG +
Sbjct: 280 MPLAALNLALLAIPLGAVNPRLGRSGDLLIAG-LVGLLYMNMINLSRAWISSGKISFSIG 338
Query: 340 ALIPVILTISLSILILLQK 358
+ L+ +L+++
Sbjct: 339 VWAVHAVVALLAAYLLMRR 357
>gi|268594204|ref|ZP_06128371.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268595873|ref|ZP_06130040.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|293399673|ref|ZP_06643825.1| hypothetical protein NGNG_01868 [Neisseria gonorrhoeae F62]
gi|268547593|gb|EEZ43011.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268549661|gb|EEZ44680.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|291609924|gb|EFF39047.1| hypothetical protein NGNG_01868 [Neisseria gonorrhoeae F62]
Length = 384
Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/267 (11%), Positives = 81/267 (30%), Gaps = 5/267 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I R K T + + + ++ + + + +I L V
Sbjct: 13 FMIYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIG 71
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ + + V R SE+ + + G+++ Q + P + ++ I ++
Sbjct: 72 MTPLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQL 131
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E + + K + + + + ++ + E+ I ++
Sbjct: 132 WVIPWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVY-FVETFDTESGIMKNLFL 190
Query: 182 ITIDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
DK + A + ++K L+ Y+Y P + ++
Sbjct: 191 REQDKNGG-DNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIIST 249
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 250 TPKLIDPVSHRRTISTAQLIGSSNPQH 276
>gi|241760314|ref|ZP_04758409.1| permease, YjgP/YjgQ family [Neisseria flavescens SK114]
gi|319637672|ref|ZP_07992438.1| hypothetical protein HMPREF0604_00061 [Neisseria mucosa C102]
gi|241319192|gb|EER55670.1| permease, YjgP/YjgQ family [Neisseria flavescens SK114]
gi|317400827|gb|EFV81482.1| hypothetical protein HMPREF0604_00061 [Neisseria mucosa C102]
Length = 371
Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/265 (12%), Positives = 82/265 (30%), Gaps = 5/265 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R F K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ I ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 MPWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + A + ++K L+ Y+Y P + ++
Sbjct: 180 QDKNGN-DNIVFAKEGNFSLTDNKRTLELRDGYRYSGTPGKADYNRVSFQHLSLIISTTP 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 239 KLIDPVSHRRTIPTAQLIGSSNPQH 263
>gi|32471812|ref|NP_864806.1| signal peptide [Rhodopirellula baltica SH 1]
gi|32397183|emb|CAD72490.1| hypothetical protein-signal peptide and transmembrane prediction
[Rhodopirellula baltica SH 1]
Length = 413
Score = 49.5 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/240 (14%), Positives = 74/240 (30%), Gaps = 15/240 (6%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
+ + + DL LP + ITL+
Sbjct: 3 FLSLAGIFIVFHAFTAMDDLIAQSKVGDSLPLVLAKFYGPYLLL----LFDMTGTIITLM 58
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
+ L RT EL + + G+S ++L P ++ S+ + + + +
Sbjct: 59 AFLFTAGWLRRTGELTATLSAGVSHGRILRPMIIASLAIISVQLANREWVIP---RFRDS 115
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHR 193
L + K+ + ++P S+ I I K+ + +
Sbjct: 116 LTMKAKNLSGDIEQAVMPTYDQSSG---ILIEGDKLRTLGRVISRPNFRLYSEYAGFGDV 172
Query: 194 KDADLAIIYN----DKVKLK-KVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRS 248
A AI ++ + + + E ++++T P +DG + ASR+
Sbjct: 173 LLAREAIWWDPEAMAEWRTEMGPTEPTGSDTASPQSTSTPATPSGIDGKRSSWTDLASRA 232
Score = 45.2 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 26/193 (13%), Positives = 61/193 (31%), Gaps = 10/193 (5%)
Query: 167 KKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP-IDKNS 225
L D T + + A + + + +V + P +
Sbjct: 225 WTDLASRAGMPDVTGYLLQGVRRPEQPNSVPSAGLSSR----EDLVIFTPADQPWLGPTE 280
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+ I + Q S E+ ++ + + T + IV +
Sbjct: 281 CFVVTSIHPNMLQTQDTATKLASVMELAGRVRN---PAVHSSMALRTTTHERIVRAPLDF 337
Query: 286 AMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS-GILLPVAAALIPV 344
A+ L+ + + R + +++ + + + TI + G S ++ P AA IP+
Sbjct: 338 ALILLVLPMVV-NRRGRKLFVLIGSAVGLIIAFFALKTIASALGGSTTMVTPGIAAWIPL 396
Query: 345 ILTISLSILILLQ 357
++ L+
Sbjct: 397 LIIGPLAYSRYRH 409
>gi|325132745|gb|EGC55428.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M6190]
Length = 396
Score = 49.5 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/265 (11%), Positives = 81/265 (30%), Gaps = 5/265 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 27 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 85
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 86 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 145
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 146 IPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 204
Query: 184 IDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + A + ++K L+ Y+Y P + ++
Sbjct: 205 QDKNGG-DNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTP 263
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 264 KLIDPVSHRRTIPTAQLIGSSNPQH 288
>gi|86142618|ref|ZP_01061057.1| hypothetical protein MED217_06881 [Leeuwenhoekiella blandensis
MED217]
gi|85830650|gb|EAQ49108.1| hypothetical protein MED217_06881 [Leeuwenhoekiella blandensis
MED217]
Length = 514
Score = 49.5 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 10/87 (11%), Positives = 30/87 (34%), Gaps = 1/87 (1%)
Query: 268 YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
+ E + V+ + + + A + R + + G+ + I K+
Sbjct: 342 SKYEIALHEKFVLAFGCIILFFVGAPLGA-IIRKGGLGLPIVIGVVLFLTYHFIGIFAKN 400
Query: 328 FGKSGILLPVAAALIPVILTISLSILI 354
+ G + A+ + ++ L + +
Sbjct: 401 SAEDGSVAAWLASWLSTLILFPLGVYL 427
Score = 49.5 bits (117), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 3/128 (2%)
Query: 75 NIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDL 134
+I+ F N E ++ GIS+ + + V + L + + L N + + E ++L
Sbjct: 50 SIMTFGNFAENYEFAAMKSTGISLQRAMRSLTVFILGLAVTSFLFANYVIPAAEFESLNL 109
Query: 135 IQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN-KIIHR 193
+ + I + A K + +D D
Sbjct: 110 RRNIAQVKPAMAITKGQYNTIGED--YVMKVADKQGEKGQFLKDVIIYQKDPSRVGNYTV 167
Query: 194 KDADLAII 201
A +
Sbjct: 168 IKAREGEL 175
>gi|187922984|ref|YP_001894626.1| permease YjgP/YjgQ family protein [Burkholderia phytofirmans PsJN]
gi|187714178|gb|ACD15402.1| permease YjgP/YjgQ family protein [Burkholderia phytofirmans PsJN]
Length = 365
Score = 49.5 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 45/355 (12%), Positives = 113/355 (31%), Gaps = 24/355 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + LV + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVG-FAASGEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V + SE+V+ + G+S+ Q + P + + + I + +
Sbjct: 61 AIMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI TS
Sbjct: 121 WPWSNQQSKLIRARFQQRDEVSLLAPGQFRESATSHRVFFIEKMSADQARVENVFVTSTE 180
Query: 184 IDKKNKIIHRK-DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
K N ++ + + + V L+ Y D ++ F+++
Sbjct: 181 NGKVNVVVSKTGHTETRKNGDRFVVLENGRRYDGQPGQPDF---------RIMEFERYGV 231
Query: 243 QFASRSFYEIIKKMSFSNKSNIFHNYRAET-QFYFLIVIPLMLVAMTLIAASVSLEFSRS 301
+ S+ + + + +F + +PL+ + + L+A ++ + R
Sbjct: 232 KIQSQPVVNTPSTTGTPTLTLLRNPTNDNLAEFAWRAGLPLIAINLMLLAIPLAHQNPRR 291
Query: 302 NQPRIIVAYGIFSGFMLYTIITIMKS----------FGKSGILLPVAAALIPVIL 346
++ I + + ++ +++S G G L + AA++ I
Sbjct: 292 SRT-INLVMAVLIYLTYSNLLNVVQSWIEQGKMSFPVGLVG-LHVIVAAIVAFIF 344
>gi|209519258|ref|ZP_03268060.1| permease YjgP/YjgQ family protein [Burkholderia sp. H160]
gi|209500338|gb|EEA00392.1| permease YjgP/YjgQ family protein [Burkholderia sp. H160]
Length = 365
Score = 49.5 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 39/327 (11%), Positives = 104/327 (31%), Gaps = 15/327 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + LV + I VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVG-FAASGEIDPRDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ V + V + SE+V+ + G+S+ + + P + + + I + +
Sbjct: 61 AIMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLARFIKPIGIFATPIIILIMFFVFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + FI +K+ P+ E+ +
Sbjct: 121 WPWSNQQSKLIRARFQQRDEVSLLAPGQFRESPTTHRVFFI--EKMSPDQGHVENVFVTS 178
Query: 184 IDKKN-KIIHRKDADLAIIYND--KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
+ ++ K+ + N V L+ Y D Q
Sbjct: 179 TEGGKVNVVVSKNGHIETHKNGDRFVVLENGRRYDGEPGHPDFRIMEFERYGVKIQSQPV 238
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + +N++ +RA PL+ + + L+A ++ + R
Sbjct: 239 VNTPTTTGLPTMTLLRNPTNENLAEFAWRAGL--------PLIAINLMLLAIPLAHQNPR 290
Query: 301 SNQPRIIVAYGIFSGFMLYTIITIMKS 327
++ I + + ++ ++++
Sbjct: 291 RSRT-INLVMAVLIYLTYSNLLNVVQA 316
>gi|254521723|ref|ZP_05133778.1| permease YjgP/YjgQ family protein [Stenotrophomonas sp. SKA14]
gi|219719314|gb|EED37839.1| permease YjgP/YjgQ family protein [Stenotrophomonas sp. SKA14]
Length = 360
Score = 49.5 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 51/372 (13%), Positives = 119/372 (31%), Gaps = 40/372 (10%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY ++++ L L+ +++ L +I + + + +
Sbjct: 4 LDRYLLGDFVQSFLATLIVLLVVSVGGVLVDILGNIAD-GRLPAKLLFSQLGLQFIAYLP 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I+P ++ ++ L R SE+ + AIG+ +LL P ++ + + + +
Sbjct: 63 LILPLALMLGLLLAIARLYRDSEMAVITAIGVGPKRLLRPLLMLVVPVVLLVGACSLWLG 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ +I + + + + + N + I P+ +
Sbjct: 123 PWAGRVAEQMIIEANRSVLMAGLEPGRFTPLPNGG---VVYLSSISPDGTELGKV-FMQR 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKL-------KKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
K ++I A + + + +V G + + N DG
Sbjct: 179 QKDDRIEVVSAAGGRMFFEGARQRFLELDDGHQVEGPAAGGLDYRLATFARNDVALPDGA 238
Query: 238 QKFSE-QFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL 296
Q +E ++I +A+ Q + + PL+ +A L+ +
Sbjct: 239 QTRTEDDPELMPTLQLI----------GDGRPQAQAQLHRRLAPPLIALAFALLTVPLGR 288
Query: 297 EFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKS----GILLPVAAAL---IPVILTIS 349
R + ++ M Y + T + G G + +P
Sbjct: 289 SSPRQQRYGRMMLA-----LMAYMVGTNLMFIGSGWIATGKIPAALGLWWLTLP-----L 338
Query: 350 LSILILLQKEDG 361
L++ I + DG
Sbjct: 339 LALSIWMYARDG 350
>gi|261379717|ref|ZP_05984290.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
gi|284797387|gb|EFC52734.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
Length = 371
Score = 49.5 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/265 (12%), Positives = 82/265 (30%), Gaps = 5/265 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R F K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ I ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 MPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + A + ++K L+ Y+Y P + ++
Sbjct: 180 QDKNGN-DNIVFAKEGNFSLTDNKRTLELRDGYRYSGTPGKADYNRVSFQHLSLIISTTP 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 239 KLIDPVSHRRTIPTAQLIGSSNPQH 263
>gi|67459766|ref|YP_247390.1| permease [Rickettsia felis URRWXCal2]
gi|67005299|gb|AAY62225.1| Predicted permeases [Rickettsia felis URRWXCal2]
Length = 369
Score = 49.5 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 58/366 (15%), Positives = 141/366 (38%), Gaps = 20/366 (5%)
Query: 4 ILWR-YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L+R YF K L + +V++ + ++ + + L +P +
Sbjct: 11 LLYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLFDK--GIKVMDFFSLIVLVLPTL 68
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++P IT++ I ++ NL +L+I +A G++ QL P + ++++ + + +
Sbjct: 69 LFILLPVITVIAVIYIYNNLKVERQLIILQASGVNNVQLALPALYAALIVMLLAYYISST 128
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + K+N S +I + +DI + K +I
Sbjct: 129 ILPLSHINLKSRLNFIKNN---YISSMIEEKTFNKVTKDITVFIDKKSA-GNIMNGVIIF 184
Query: 183 TIDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD--- 235
+ A + N +L K + +Y T ++ IK+
Sbjct: 185 DNRNADNP-SVVFAGSGTLNIYDNNPIFELNKGIRQEYDVNGNLTQLTFDSLMIKLQNDN 243
Query: 236 --GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
Q+ + +Y I + ++ + I + + + I+ PL + +A +
Sbjct: 244 PLVSQRTKHNKEANEYY-ISELLAPPHDLAITKKIKLIAEAHQRIIWPLYNFVLPFLALA 302
Query: 294 VSLEFSRSNQPRII-VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
V L + S + + V + + ++ +I I+++F L + A +I+ +++ +
Sbjct: 303 VFLRYPYSKKTTFMPVLFSALTVLLVTSIHFILQNFASKN-LDFIFACYSNLIIALTIGL 361
Query: 353 LILLQK 358
+ ++K
Sbjct: 362 YLFVRK 367
>gi|261401002|ref|ZP_05987127.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
gi|269209119|gb|EEZ75574.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
Length = 371
Score = 49.5 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/265 (11%), Positives = 81/265 (30%), Gaps = 5/265 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L + +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWIIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 MPWAELRSREYAEILKQKQELSLVEAGRFNTLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + A + ++K L+ Y+Y P + ++
Sbjct: 180 QDKNGN-DNIIFAKEGNFSLNDNKRTLELRDGYRYSGTPGKADYNRVSFRHLSLIISTTP 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 239 KLIDPVSHRRTIPTAQLIGSSNPQH 263
>gi|261377636|ref|ZP_05982209.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
gi|269146390|gb|EEZ72808.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
Length = 371
Score = 49.5 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/186 (12%), Positives = 62/186 (33%), Gaps = 2/186 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R F K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ I ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 MPWAELRSREYAEILKQKQELSMVEAGEFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNK 189
DK K
Sbjct: 180 QDKNGK 185
>gi|332885237|gb|EGK05488.1| hypothetical protein HMPREF9456_02689 [Dysgonomonas mossii DSM
22836]
Length = 664
Score = 49.5 bits (117), Expect = 9e-04, Method: Composition-based stats.
Identities = 10/85 (11%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ +++ V+ + I A + R + V + + Y I I
Sbjct: 369 HKVEWHRKFVLSFACLIFFFIGAPLGA-IIRKGGLGMPVVVSVLLFIVYYIIDNIGYKMA 427
Query: 330 KSGILLPVAAALIPVILTISLSILI 354
+ G+ + L + +
Sbjct: 428 RDGVWEVWQGMWLSSFALFPLGVFL 452
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 59/167 (35%), Gaps = 7/167 (4%)
Query: 16 TTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVN 75
T L +++ F+ E G L N ++ + A + I +P L+ +
Sbjct: 2 MTFGICLFIVLMQFLWKFVEDLVGKG-LDNVVLAELFMYAILNL---IPLALPLSLLLAS 57
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
++ F NL EL+ +A G+S+ + + P ++ + + N + L+
Sbjct: 58 LMAFGNLGERLELLAIKAAGVSLLKTMKPLIIFISCVAVGAFFFQNEAMPRIQVKLRSLM 117
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + + + + + KK E + +D
Sbjct: 118 ISIRQKSPELDIPEGSFY---SGITNYSLYVKKKDKETRMLKDVMIY 161
>gi|240116444|ref|ZP_04730506.1| hypothetical protein NgonPID1_09463 [Neisseria gonorrhoeae PID18]
gi|260441666|ref|ZP_05795482.1| hypothetical protein NgonDG_11382 [Neisseria gonorrhoeae DGI2]
gi|268602116|ref|ZP_06136283.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268586247|gb|EEZ50923.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
Length = 371
Score = 49.5 bits (117), Expect = 9e-04, Method: Composition-based stats.
Identities = 32/265 (12%), Positives = 82/265 (30%), Gaps = 5/265 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q ++P + ++ I ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWISPVMQFAVPFAILIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + A + ++K L+ Y+Y P + ++
Sbjct: 180 QDKNGG-DNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTP 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 239 KLIDPVSHRRTISTAQLIGSSNPQH 263
>gi|317011287|gb|ADU85034.1| hypothetical protein HPSA_05295 [Helicobacter pylori SouthAfrica7]
Length = 345
Score = 49.5 bits (117), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S ++ FV SIL+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKKMAKAFVPLSILVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|15604701|ref|NP_221219.1| hypothetical protein RP871 [Rickettsia prowazekii str. Madrid E]
gi|6831726|sp|Q9ZC95|Y871_RICPR RecName: Full=Uncharacterized protein RP871
gi|3861396|emb|CAA15295.1| unknown [Rickettsia prowazekii]
Length = 360
Score = 49.5 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 56/367 (15%), Positives = 138/367 (37%), Gaps = 22/367 (5%)
Query: 4 ILWR-YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L+R YF K L + +V++ + ++ + + L +P +
Sbjct: 2 LLYRKYFIKNILPLLIIVTFSVTSIVWITQILKLLYLFDK--GIKVIDFFNLVVLVLPTL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++P IT++ + ++ NL +L+I + G++ QL P + ++ + + + +
Sbjct: 60 LFILLPIITVIAVLYIYNNLKVERQLIILQTSGVNNIQLALPALYVALTIMLLAYYISST 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + K+N S +I + ++I + K L +I
Sbjct: 120 ILPLSHINLKSRLNFIKNN---YISSMIEEKTFNKITKNITVFIDKKLT-GNIMNGIIIF 175
Query: 183 TIDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYG------RIPIDKNSTTLNIPI 232
+ A + N +L K + +Y ++ D L
Sbjct: 176 DNRNADNP-SVVFAGSGTLNIYGNNPIFELNKGLRQEYDANGNLTQLTFDSLMIKLQNNS 234
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
+ Q+ + +Y I + ++ S+ I + + + I+ PL + +A
Sbjct: 235 SLTS-QRTQNNKEANEYY-ISELLTPSHDLVITKKIKLIAEAHQRIIWPLYNFVLPCLAL 292
Query: 293 SVSLEFSRSNQPRII-VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351
+V L + S + + V + + + I I+++F L + A +++ +++
Sbjct: 293 AVFLRYPYSKKTTFMPVLFSALTVLFVTAIHFILQNFASKN-LDFIFACYFNLLVALTIG 351
Query: 352 ILILLQK 358
+ +L+ K
Sbjct: 352 LYLLVHK 358
>gi|325136763|gb|EGC59363.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M0579]
gi|325208502|gb|ADZ03954.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
NZ-05/33]
Length = 396
Score = 49.5 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 31/265 (11%), Positives = 81/265 (30%), Gaps = 5/265 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 27 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 85
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 86 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 145
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 146 IPWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 204
Query: 184 IDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + A + ++K L+ Y+Y P + ++
Sbjct: 205 QDKNGG-DNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTP 263
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 264 KLIDPVSHRRTIPTAQLIGSSNPQH 288
>gi|268683689|ref|ZP_06150551.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268623973|gb|EEZ56373.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
Length = 384
Score = 49.5 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 32/267 (11%), Positives = 81/267 (30%), Gaps = 5/267 (1%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I R K T + + + ++ + + + +I L V
Sbjct: 13 FMIYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIG 71
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
+ ++ + + V R SE+ + + G+++ Q + P + ++ I ++
Sbjct: 72 MTPLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQL 131
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
+ E + + K + + + + ++ + E+ I ++
Sbjct: 132 WVIPWAELRNREYAEILKQKQELSLVEAGEFNNLGKRNGRVY-FVETFDTESGIMKNLFL 190
Query: 182 ITIDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
DK + A + ++K L+ Y+Y P + ++
Sbjct: 191 REQDKNGG-DNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIIST 249
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 250 TPKLIDPVSHRRTISTAQLIGSSNPQH 276
>gi|161870424|ref|YP_001599597.1| hypothetical protein NMCC_1472 [Neisseria meningitidis 053442]
gi|161595977|gb|ABX73637.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 432
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 31/265 (11%), Positives = 81/265 (30%), Gaps = 5/265 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 63 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 121
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 122 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 181
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 182 IPWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 240
Query: 184 IDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + A + ++K L+ Y+Y P + ++
Sbjct: 241 QDKNGG-DNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTP 299
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 300 KLIDPVSHRRTIPTAQLIGSSNPQH 324
>gi|33593405|ref|NP_881049.1| putative integral membrane protein [Bordetella pertussis Tohama I]
gi|33572761|emb|CAE42691.1| putative integral membrane protein [Bordetella pertussis Tohama I]
gi|332382814|gb|AEE67661.1| putative integral membrane protein [Bordetella pertussis CS]
Length = 370
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 41/319 (12%), Positives = 110/319 (34%), Gaps = 7/319 (2%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ LAA + I+ + + R SE+V+ A G+S+ L
Sbjct: 42 GSIGADVVLGLAAFSTITALPTILAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWLR 101
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
P ++ + + + + + + + ++ D K + + + D
Sbjct: 102 PVARVAVPIAMLVAALTLVASPWAYRQIGEYRELFEQRSDLSKVTAGQFA--ESGRGDRV 159
Query: 164 IGAKKILPENHIWEDFTSITIDKKN-KIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPID 222
A+ + + +ID + ++ +A + N L ++Y P
Sbjct: 160 FFAEDPVRPGDELGAVFARSIDPEWLSVLTASNARSETLPNGDRFLVLGEGHRYDLKPGT 219
Query: 223 KNSTTLNIP---IKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV 279
+N ++++ +R+ E K + + + + +Q + +
Sbjct: 220 PEIRLVNFDQYGVRLESKAGEDPMAEARAAAERSSKARSTMQLVQDNTDSSWSQIMWRVA 279
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
+PL + + L+A + R + ++ G G + +I + +++ SG +
Sbjct: 280 MPLAALNLALLAIPLGAVNPRLGRSGDLLIAG-LVGLLYMNMINLSRAWISSGKISFSIG 338
Query: 340 ALIPVILTISLSILILLQK 358
+ L+ +L+++
Sbjct: 339 VWAVHAVVALLAAYLLMRR 357
>gi|225075102|ref|ZP_03718301.1| hypothetical protein NEIFLAOT_00101 [Neisseria flavescens
NRL30031/H210]
gi|224953586|gb|EEG34795.1| hypothetical protein NEIFLAOT_00101 [Neisseria flavescens
NRL30031/H210]
Length = 373
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 22/186 (11%), Positives = 61/186 (32%), Gaps = 2/186 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R F K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ I ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 MPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNK 189
DK
Sbjct: 180 QDKNGN 185
>gi|198283963|ref|YP_002220284.1| permease YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|198248484|gb|ACH84077.1| permease YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans
ATCC 53993]
Length = 368
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFI 70
+ + L L + ++ + L ++ Q+ +S L +P ++ ++P
Sbjct: 5 RNLTISFLLTSLVVLAILAIGQLTQLLRQVAS-GQLPLSIILRLLGLALPTLLVMVLPLA 63
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
+VF NL R++E+V R+ G + LL P V + + +++ A ++
Sbjct: 64 FFFAVYLVFSNLYRSNEMVAIRSTGTGLSGLLPPVAVVAACVFCLELILSLSWAPGAQR 122
>gi|218665831|ref|YP_002426599.1| YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans ATCC
23270]
gi|218518044|gb|ACK78630.1| YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 373
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 11 KYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFI 70
+ + L L + ++ + L ++ Q+ +S L +P ++ ++P
Sbjct: 10 RNLTISFLLTSLVVLAILAIGQLTQLLRQVAS-GQLPLSIILRLLGLALPTLLVMVLPLA 68
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
+VF NL R++E+V R+ G + LL P V + + +++ A ++
Sbjct: 69 FFFAVYLVFSNLYRSNEMVAIRSTGTGLSGLLPPVAVVAACVFCLELILSLSWAPGAQR 127
>gi|120611822|ref|YP_971500.1| permease [Acidovorax citrulli AAC00-1]
gi|120590286|gb|ABM33726.1| permease YjgP/YjgQ family protein [Acidovorax citrulli AAC00-1]
Length = 365
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 41/287 (14%), Positives = 98/287 (34%), Gaps = 9/287 (3%)
Query: 41 GELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQ 100
+ + S ++ V + I+ V + + R SE+VI A G +
Sbjct: 38 ASRGSVNPSDVMLVMGFTVLGQLPTILTLSLFVAVVGTLARMYRESEMVIWFASGRGMLH 97
Query: 101 LLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ 160
LL P + + + + + I + L Q++ D + I P +
Sbjct: 98 LLPPLLRFAWPVILAIATLALLIWPWANQQIQQLKVQYEQRSDVDR--IAPGEFQESANG 155
Query: 161 DIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP 220
+ P+N + I ++ + A A + + + + R+
Sbjct: 156 ARVFFIDRETPDNQQATNV-FIASNEHGR-ETVTSARSARLETRGNQ-RMALLSDGQRLE 212
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSN-KSNIFHNYRAETQFYFLIV 279
+ L + + + +S S +K S + ++ +RAE + F +
Sbjct: 213 TSLDKPGLKVSEFSEYGTRIGGAASSSSDDGAVKTRSTAQLFASSDPVFRAELGWRFGLA 272
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK 326
+ ++ +V+ R+ + +V +F+ + Y ++T +
Sbjct: 273 --FAALNFVVLGLAVASANPRAARSTSLVF-ALFAFVVYYNLMTFGQ 316
>gi|261364965|ref|ZP_05977848.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
gi|288566762|gb|EFC88322.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
Length = 371
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 22/186 (11%), Positives = 61/186 (32%), Gaps = 2/186 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R F K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ I ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 MPWAELRSREYAEILKQKQELSMVEAGEFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNK 189
DK
Sbjct: 180 QDKNGN 185
>gi|207108562|ref|ZP_03242724.1| hypothetical protein HpylH_03299 [Helicobacter pylori
HPKX_438_CA4C1]
Length = 206
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 38/95 (40%)
Query: 46 YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF 105
S L +P I I+P + L+ EL++ ++G+S ++ F
Sbjct: 4 VSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAF 63
Query: 106 VVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKD 140
V S+L+ ++ + + + ++Q KD
Sbjct: 64 VPLSLLVSAILLVFSLILIPTSKSAYYGFLRQKKD 98
>gi|126439084|ref|YP_001058064.1| hypothetical protein BURPS668_1014 [Burkholderia pseudomallei 668]
gi|126218577|gb|ABN82083.1| putative membrane protein [Burkholderia pseudomallei 668]
Length = 365
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 36/330 (10%), Positives = 100/330 (30%), Gaps = 21/330 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R + T + + ++ + I + VL V +
Sbjct: 2 IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAAS-GEVNPKDVLVLIGLTVIGYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
I+ V + V + SE+V+ A G+S+ +L+ P V + + I
Sbjct: 61 AMILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVG 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ + +++ + + + + + FI T+
Sbjct: 121 WPWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSSDQAKVQNVFVTTTE 180
Query: 184 IDKKNKIIHRK-DADLAIIYNDKVKLKKVVEYQ--YGRIPI---DKNSTTLNIPIKMDGF 237
K N ++ + + + + L+ Y G+ + + I K
Sbjct: 181 HGKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVS 240
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q + ++ + + + +PL+ + + ++A ++ +
Sbjct: 241 QPTTTGTSTPDLLRNPTNQNLAEFAWRAG-------------LPLIAINLMILAIPLAYQ 287
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKS 327
R + + + + ++ +++S
Sbjct: 288 NPRRGRT-VNLVMAVLIYLTYSNLLNVVQS 316
>gi|59801587|ref|YP_208299.1| hypothetical protein NGO1228 [Neisseria gonorrhoeae FA 1090]
gi|194097861|ref|YP_002000906.1| hypothetical protein NGK_0281 [Neisseria gonorrhoeae NCCP11945]
gi|239998342|ref|ZP_04718266.1| hypothetical protein Ngon3_02533 [Neisseria gonorrhoeae 35/02]
gi|240014487|ref|ZP_04721400.1| hypothetical protein NgonD_07553 [Neisseria gonorrhoeae DGI18]
gi|240016933|ref|ZP_04723473.1| hypothetical protein NgonFA_07151 [Neisseria gonorrhoeae FA6140]
gi|240079727|ref|ZP_04724270.1| hypothetical protein NgonF_00199 [Neisseria gonorrhoeae FA19]
gi|240117144|ref|ZP_04731206.1| hypothetical protein NgonPID_01570 [Neisseria gonorrhoeae PID1]
gi|240121009|ref|ZP_04733971.1| hypothetical protein NgonPI_04421 [Neisseria gonorrhoeae PID24-1]
gi|268602832|ref|ZP_06136999.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|59718482|gb|AAW89887.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|193933151|gb|ACF28975.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|268586963|gb|EEZ51639.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|317163631|gb|ADV07172.1| hypothetical protein NGTW08_0198 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 371
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 32/265 (12%), Positives = 81/265 (30%), Gaps = 5/265 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ I ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + A + ++K L+ Y+Y P + ++
Sbjct: 180 QDKNGG-DNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTP 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 239 KLIDPVSHRRTISTAQLIGSSNPQH 263
>gi|15612083|ref|NP_223735.1| hypothetical protein jhp1018 [Helicobacter pylori J99]
gi|4155611|gb|AAD06602.1| putative [Helicobacter pylori J99]
Length = 345
Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S ++ FV S+L+ + + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLAFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|309378516|emb|CBX22869.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 371
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 31/265 (11%), Positives = 81/265 (30%), Gaps = 5/265 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L + +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWIIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 MPWAELRSREYAEILKQKQELSLVEAGRFNTLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + A + N+K L+ Y+Y P + ++
Sbjct: 180 QDKNGN-DNIIFAKEGNFSLNNNKRALELRDGYRYSGTPGKADYNRVSFRHLSLIISTTP 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 239 KLIDPVSHRRTIPTAQLIGSSNPQH 263
>gi|261392198|emb|CAX49712.1| conserved hypothetical integral membrane protein [Neisseria
meningitidis 8013]
Length = 371
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 30/265 (11%), Positives = 81/265 (30%), Gaps = 5/265 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L + +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWIIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + A + ++K L+ Y+Y P + ++
Sbjct: 180 QDKNGG-DNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTP 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 239 KLIDPVSHRRTIPTAQLIGSSNPQH 263
>gi|241765203|ref|ZP_04763187.1| permease YjgP/YjgQ family protein [Acidovorax delafieldii 2AN]
gi|241365132|gb|EER60004.1| permease YjgP/YjgQ family protein [Acidovorax delafieldii 2AN]
Length = 365
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 88/303 (29%), Gaps = 38/303 (12%)
Query: 41 GELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQ 100
+ S S ++ V + I+ V + V + R SE+VI + G +
Sbjct: 38 ASRGSVSPSDVMLVMGFTVLGQLPIILSLSLFVAVVGVLSRMYRDSEMVIWFSGGRGLIS 97
Query: 101 LLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ 160
LL P + + + L+ + +L +++ D + I P +
Sbjct: 98 LLPPLLRFAWPVMAVIALLSLGVWPWANAQIQELKTRYEQRSDIDR--IAPGEFQESANG 155
Query: 161 DIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP 220
K P+ + + A A + Q R
Sbjct: 156 SRVFFIDKDAPDTQVGNNI--FIAASNGPKESVTSARSARLE----------IRQGERFA 203
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVI 280
+ L F E ++ ++ S + L++
Sbjct: 204 LLSQGQRLESSSD-------HPGLKISEFVEYGTRIGGASASATEELAVKTRATHELLMQ 256
Query: 281 P--------------LMLVA--MTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
P L L A ++ +++ R+ + + + + + + Y ++T+
Sbjct: 257 PAIPAFQAELGWRLGLALAAINFVILGLALASVNPRAGRSGSM-LFALLAFVVYYNLMTL 315
Query: 325 MKS 327
+S
Sbjct: 316 GQS 318
>gi|253827767|ref|ZP_04870652.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|253511173|gb|EES89832.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
Length = 314
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 46/313 (14%), Positives = 109/313 (34%), Gaps = 25/313 (7%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNP 104
S L +PL+I +IP V + L+ EL + A+G++ +++
Sbjct: 15 QISFFELLSLYFYTLPLMIFFVIPLSFFVACTLSLSRLSFDYELPVLFALGMNPSKIIKI 74
Query: 105 FVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
F + L+ ++ + + +++ K++ + D +
Sbjct: 75 FFPIAALVSFSLFILSLVLTPLSDTAYRQFLEERKNSININLQAGEF----GQKLGDWLV 130
Query: 165 GAKKILPENHIWEDFTSITIDKKNKIIHRKDADL-AIIYNDKVKLKKVVEYQYGRIPIDK 223
+K E+ +E+ ++ K+ +I +A + + + L+K Y+ ++K
Sbjct: 131 YVQKS-KEDSSYENIVLLSFAKEGGMIFSDNAKIVNQMGVMEAILEKGSIYRPKEDFVEK 189
Query: 224 -NSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPL 282
TL I + + ++ K +F R + + + PL
Sbjct: 190 ILFDTLIIRSSITAIDEV--DLGVIGYW----KRAFYENDRQKKTLRNLSMYVMMSCFPL 243
Query: 283 M-LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341
+ L L+ + R + + + + Y ++ + S LP+
Sbjct: 244 VSLFFFPLLGV----KNPRYQKNYT-ILQAMGVIGIFYALMYLFAS------YLPLLGMF 292
Query: 342 IPVILTISLSILI 354
I I+ + L L+
Sbjct: 293 IFPIIWLLLGYLL 305
>gi|217034468|ref|ZP_03439880.1| hypothetical protein HP9810_890g13 [Helicobacter pylori 98-10]
gi|216943070|gb|EEC22547.1| hypothetical protein HP9810_890g13 [Helicobacter pylori 98-10]
gi|308062367|gb|ADO04255.1| hypothetical protein HPCU_05530 [Helicobacter pylori Cuz20]
gi|317178605|dbj|BAJ56393.1| hypothetical protein HPF30_0296 [Helicobacter pylori F30]
gi|332673892|gb|AEE70709.1| conserved hypothetical protein [Helicobacter pylori 83]
Length = 345
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S ++ FV S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|188527872|ref|YP_001910559.1| hypothetical protein HPSH_05605 [Helicobacter pylori Shi470]
gi|188144112|gb|ACD48529.1| hypothetical protein HPSH_05605 [Helicobacter pylori Shi470]
Length = 345
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S ++ FV S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|308183196|ref|YP_003927323.1| hypothetical protein HPPC_05300 [Helicobacter pylori PeCan4]
gi|308065381|gb|ADO07273.1| hypothetical protein HPPC_05300 [Helicobacter pylori PeCan4]
Length = 345
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S ++ FV S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSTYYGFLRQKKD 136
>gi|297380268|gb|ADI35155.1| Hypothetical protein HPV225_1109 [Helicobacter pylori v225d]
gi|308063875|gb|ADO05762.1| hypothetical protein HPSAT_05215 [Helicobacter pylori Sat464]
Length = 345
Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S ++ FV S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|121635227|ref|YP_975472.1| hypothetical protein NMC1490 [Neisseria meningitidis FAM18]
gi|254805325|ref|YP_003083546.1| putative permease [Neisseria meningitidis alpha14]
gi|120866933|emb|CAM10693.1| conserved integral membrane hypothetical protein [Neisseria
meningitidis FAM18]
gi|254668867|emb|CBA06967.1| putative permease [Neisseria meningitidis alpha14]
gi|254669825|emb|CBA04193.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
gi|254672903|emb|CBA07222.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
gi|325138630|gb|EGC61189.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
ES14902]
gi|325142745|gb|EGC65120.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
961-5945]
gi|325198680|gb|ADY94136.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis G2136]
Length = 371
Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 31/265 (11%), Positives = 81/265 (30%), Gaps = 5/265 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + A + ++K L+ Y+Y P + ++
Sbjct: 180 QDKNGG-DNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTP 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 239 KLIDPVSHRRTIPTAQLIGSSNPQH 263
>gi|240122360|ref|ZP_04735316.1| hypothetical protein NgonP_00185 [Neisseria gonorrhoeae PID332]
gi|240125094|ref|ZP_04737980.1| hypothetical protein NgonSK_02547 [Neisseria gonorrhoeae SK-92-679]
gi|254494457|ref|ZP_05107628.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268680947|ref|ZP_06147809.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|226513497|gb|EEH62842.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268621231|gb|EEZ53631.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
Length = 371
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 32/265 (12%), Positives = 81/265 (30%), Gaps = 5/265 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ I ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRNREYAEILKQKQELSLVEAGEFNNLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + A + ++K L+ Y+Y P + ++
Sbjct: 180 QDKNGG-DNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTP 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 239 KLIDPVSHRRTISTAQLIGSSNPQH 263
>gi|317177843|dbj|BAJ55632.1| hypothetical protein HPF16_1035 [Helicobacter pylori F16]
Length = 345
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S ++ FV S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|237751254|ref|ZP_04581734.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
gi|229372620|gb|EEO23011.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
Length = 342
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 32/217 (14%), Positives = 74/217 (34%), Gaps = 10/217 (4%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
+ +L +Y + + F + +I L I + S+ L +P
Sbjct: 2 LIMLLKKYVLRSIGEMFFPFFFVLFFIASIILLLNIA-MLTNGVKLSMIDLMQLYLYGIP 60
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+I I+ L+ SE+++ ++G+S ++ + +L+ +
Sbjct: 61 ANTFFVIALTFYSACILGLSKLSYESEMLVFFSLGVSPKDIIRILLPLCVLVSFVLCMFS 120
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQ------KSDIIPWM-QISNPQQDIFIGAKKILPEN 173
+ + ++ D I K+ + I W+ I + +++F G
Sbjct: 121 FVMTPNSKQAYKDFISLKKNEINIDLKPGDFGQKIGDWLVYIDSKDKNVFHGLVLYANTT 180
Query: 174 HIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKK 210
+D I K KI +R+ ++Y+
Sbjct: 181 EQIKDN--FIIAKTGKIENRQGILELVLYDGDAYFND 215
>gi|15677420|ref|NP_274576.1| hypothetical protein NMB1570 [Neisseria meningitidis MC58]
gi|304387021|ref|ZP_07369276.1| YjgP/YjgQ family permease [Neisseria meningitidis ATCC 13091]
gi|7226817|gb|AAF41923.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|304338893|gb|EFM04992.1| YjgP/YjgQ family permease [Neisseria meningitidis ATCC 13091]
gi|316983818|gb|EFV62798.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|325140780|gb|EGC63294.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis CU385]
gi|325199831|gb|ADY95286.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis H44/76]
Length = 371
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 31/265 (11%), Positives = 81/265 (30%), Gaps = 5/265 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + A + ++K L+ Y+Y P + ++
Sbjct: 180 QDKNGG-DNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTP 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 239 KLIDPVSHRRTIPTAQLIGSSNPQH 263
>gi|315122195|ref|YP_004062684.1| permease protein [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495597|gb|ADR52196.1| permease protein [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 283
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 65/294 (22%), Positives = 105/294 (35%), Gaps = 38/294 (12%)
Query: 82 LNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN 141
+NR +EL I G S L+ P + +ILL IF ++ N + L Q N
Sbjct: 1 MNRNAELFIIDNTGTSRITLIKPVLFFAILLSIFLFILENTLEPKYRTEIKRLGAQAYLN 60
Query: 142 GDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLA-- 199
+ N + +I K P N + ID + IIHR +
Sbjct: 61 LTLSSLEENL---FFNLNNNFYIKVSKRNPNNT-MQGI--FAIDSSDPIIHRIYYAKSGF 114
Query: 200 -IIYNDKVKLKKVVEYQYGRIPID-----KNSTTLNIPI---KMDGFQKFSEQFASRSFY 250
+ + L+K ++ + D +S L++ K D K +Q S
Sbjct: 115 VDLEKKIIILQKGEVHRKSSVSKDISIMKFDSYALDMQSLLAKQDITLKAHDQNLSFLLN 174
Query: 251 EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA-----SVSLEFSRSNQPR 305
+ S + N YR+E + + L + LI+ + SL R P
Sbjct: 175 PDPN--NPSYRENFIGKYRSE--LHKRLTQWLFPIVFGLISILSIEKTSSLRHYRKVHPS 230
Query: 306 IIVAY---GIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILL 356
+I +FSGF Y I I +S + + + + SIL+LL
Sbjct: 231 LIALLLSFCVFSGFS-YIIQGIEQS---PSYIPILY-----LFFFVLSSILVLL 275
>gi|187477637|ref|YP_785661.1| permease [Bordetella avium 197N]
gi|115422223|emb|CAJ48747.1| putative permease [Bordetella avium 197N]
Length = 372
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 54/166 (32%), Gaps = 3/166 (1%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
LAA + I+ + + R SE+V+ A G+S+ +
Sbjct: 42 GTIGADVVLGLAAFSTITALPTILAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWVR 101
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
P + +I + + + A + + ++++ D K + + + +
Sbjct: 102 PVLRVAIPVALMVAGLTLVAAPWAYRQIGEYRERFEQRSDLSKVAAGQFA--ESGRGNRV 159
Query: 164 IGAKKILPENHIWEDFTSITIDKK-NKIIHRKDADLAIIYNDKVKL 208
A+ + + ID + ++ K A + N L
Sbjct: 160 FFAEDPVDPGDELGAVFARAIDPEWFSVLTAKSARGETLENGDRFL 205
>gi|209363910|ref|YP_001424259.2| hypothetical membrane spanning protein [Coxiella burnetii Dugway
5J108-111]
gi|207081843|gb|ABS76872.2| hypothetical membrane spanning protein [Coxiella burnetii Dugway
5J108-111]
Length = 372
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 42/320 (13%), Positives = 102/320 (31%), Gaps = 26/320 (8%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M I++RY K L T L L +I+ N ++ + + +VP
Sbjct: 1 MSVIVFRYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAAA-GKITVKAVMEIMSLQVP 59
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
L++ ++P + + + E+VI A G+S Q++ +V + +G+ ++
Sbjct: 60 LLLGYLLPLGLFLGGLFALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLM 119
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ + + +++ +K Q + +F A + + +
Sbjct: 120 LSVEPKMQWYRVKILKDAVATASLEKIVPGR-FQPLSSNGQVF-YAGGVNDHHQKMLNVF 177
Query: 181 SITIDKKNKIIHR--KDADLA-----IIYNDKVKLKKVVEY-----QYGRIPIDKNSTTL 228
+ AD A + + K Y + + +
Sbjct: 178 LAQSETAGGKQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGI 237
Query: 229 NIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
+ + + + + K + +A + + I +PL +
Sbjct: 238 RLTSPAMDITGRVDAMPTSKLWHLHSK-----------DLKAAAELQWRIAMPLSVWLFA 286
Query: 289 LIAASVSLEFSRSNQPRIIV 308
L+ S+S R + ++
Sbjct: 287 LLIVSLSEANPRKGKFAQML 306
>gi|255066291|ref|ZP_05318146.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
gi|255049501|gb|EET44965.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
Length = 371
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 21/186 (11%), Positives = 61/186 (32%), Gaps = 2/186 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R F K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFALLIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 MPWAELRSREYAEILKQKQELSMVEAGEFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNK 189
DK
Sbjct: 180 QDKNGN 185
>gi|218768538|ref|YP_002343050.1| conserved integral membrane hypothetical protein [Neisseria
meningitidis Z2491]
gi|121052546|emb|CAM08886.1| conserved integral membrane hypothetical protein [Neisseria
meningitidis Z2491]
gi|308389704|gb|ADO32024.1| hypothetical protein NMBB_1799 [Neisseria meningitidis alpha710]
gi|319410787|emb|CBY91172.1| conserved hypothetical integral membrane protein [Neisseria
meningitidis WUE 2594]
gi|325128631|gb|EGC51500.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis N1568]
gi|325130631|gb|EGC53374.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
OX99.30304]
gi|325144870|gb|EGC67158.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
M01-240013]
gi|325201754|gb|ADY97208.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
M01-240149]
gi|325204534|gb|ADY99987.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
M01-240355]
gi|325205695|gb|ADZ01148.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
M04-240196]
Length = 371
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 31/265 (11%), Positives = 81/265 (30%), Gaps = 5/265 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + A + ++K L+ Y+Y P + ++
Sbjct: 180 QDKNGG-DNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTP 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 239 KLIDPVSHRRTIPTAQLIGSSNPQH 263
>gi|320200608|gb|EFW75194.1| hypothetical protein ECoL_02174 [Escherichia coli EC4100B]
Length = 56
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 304 PRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ V GI GF+ Y + I + P+ AL+P +S+ +L++K
Sbjct: 1 MGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 55
>gi|254514079|ref|ZP_05126140.1| permease YjgP/YjgQ family protein [gamma proteobacterium NOR5-3]
gi|219676322|gb|EED32687.1| permease YjgP/YjgQ family protein [gamma proteobacterium NOR5-3]
Length = 362
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 42/311 (13%), Positives = 93/311 (29%), Gaps = 15/311 (4%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L Y L TL + ++ + + + + R+P ++
Sbjct: 3 LRSYLGSDVLGHTLAVSSVLLAIILTGRFVKYLAEAAS-GKLAAEILLPVMFYRLPGFLE 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P + ++ + L SE+VI A G+ +L + + L+ + + I
Sbjct: 62 LLLPLGLFIGILMSYGRLYVESEMVILSACGVGPAKLARFTLAPAFLIMLIVAGLSLFIT 121
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI-- 182
G L+ + Q + A I PE
Sbjct: 122 PQGAARSEALLNDPQALQGLQLLAAGRF--QPRGDDGTVTYAADIDPEAGDLRQVFLYAP 179
Query: 183 -TIDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+ D + + A + L+ Y++ P + ++
Sbjct: 180 KSADDERAVAGVTVARRGSVVVDEATGARYLELSHGYRFSGTPGRADYRVVSFG---QFG 236
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
Q E+ + + K + + RA + + + LM+ + L+A S+S
Sbjct: 237 QLLPEEPSMARSEPVDAKPTRQLLESRDPEDRAALHW--RLSVALMVPIVALLALSLSKT 294
Query: 298 FSRSNQPRIIV 308
R + +
Sbjct: 295 NHRRGRYIKLA 305
>gi|194364315|ref|YP_002026925.1| permease YjgP/YjgQ family protein [Stenotrophomonas maltophilia
R551-3]
gi|194347119|gb|ACF50242.1| permease YjgP/YjgQ family protein [Stenotrophomonas maltophilia
R551-3]
Length = 360
Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 44/366 (12%), Positives = 115/366 (31%), Gaps = 28/366 (7%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY ++++ L L+ +++ L +I + + + +
Sbjct: 4 LDRYLLGDFVQSFLATLIVLLVVSVGGVLVDILGNIAD-GRLPAKLLFSQLGLQFIAYLP 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I+P ++ ++ L R SE+ + AIG+ +LL P ++ + + +
Sbjct: 63 LILPLALMLGLLLAVARLYRDSEMAVITAIGVGPKRLLRPLLMLVLPVVALVGACSLWLG 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
++ +I + + + + + N + I P+ +
Sbjct: 123 PWAGRVAEQMIIEANRSVLMAGLEPGRFTPLPNGG---VVYLSSISPDGTRLGRV-FLQR 178
Query: 185 DKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQF 244
K +++ A + + + + + + ++ F +
Sbjct: 179 QKDDRLEVVSAAGGRMFFEGARQ----RFLELDDGHQVEGPVAGGLDYRLATFARNDVAL 234
Query: 245 ASRSFYEIIKKMSFSNKSNIFHNYR--AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSN 302
+ + +F + R A+ Q + + PL+ +A L+ + R
Sbjct: 235 PDGAQTRTENDPELMPTTKLFGDARPEAQAQLHRRLAPPLIALAFALLTVPLGRSSPRQQ 294
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKS----GILLPVAAAL---IPVILTISLSILIL 355
+ ++ + Y + T + G G + +P L + I
Sbjct: 295 RYGRMMLALLA-----YMVGTNLMFIGSGWIATGKIPAALGLWWLTLP-----LLGLAIW 344
Query: 356 LQKEDG 361
+ DG
Sbjct: 345 MYARDG 350
>gi|325134627|gb|EGC57267.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M13399]
Length = 371
Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 31/265 (11%), Positives = 81/265 (30%), Gaps = 5/265 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + A + ++K L+ Y+Y P + ++
Sbjct: 180 QDKNGG-DNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTP 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 239 KLIDPVSHRRTIPTAQLIGSSNPQH 263
>gi|296315184|ref|ZP_06865125.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
gi|296837908|gb|EFH21846.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
Length = 371
Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 31/269 (11%), Positives = 80/269 (29%), Gaps = 5/269 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + + + +I L V +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ + ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVY-FVETFNTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + A + ++K L Y+Y P + ++
Sbjct: 180 QDKNGN-DNIIFAKEGNFSLNDNKRTLDLHDGYRYSGTPGKADYNRVSFQHLSLIISTTP 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFHNYRA 270
+ S I SN H
Sbjct: 239 KLIDPVSHRRTIPTAQLIGSSNPQHRAEL 267
>gi|319956628|ref|YP_004167891.1| permease yjgp/yjgq family protein [Nitratifractor salsuginis DSM
16511]
gi|319419032|gb|ADV46142.1| permease YjgP/YjgQ family protein [Nitratifractor salsuginis DSM
16511]
Length = 340
Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 52/356 (14%), Positives = 112/356 (31%), Gaps = 30/356 (8%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY + K L L +++V +I + + N L +P I
Sbjct: 6 RYILWSFAKAYLLVFLPFLLVVSLI-FVIQLSILSSRVNLEFRELVQLFGYMLPEIFFYT 64
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+P + F + +E + ++G + ++L + +L +++ +
Sbjct: 65 VPLSLIAALANTFTRFSEENEFIALFSLGHTPGKVLRFMIPTLLLFTALLLVLSVMLYPQ 124
Query: 127 GEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK 186
++ +Q S + + +F+ +K N + +
Sbjct: 125 MKQKLNHFKRQKIAEATLNISPNK--LSQNFGSYHVFVESK---DANDTYRNMVLFNQGT 179
Query: 187 KNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
K A + ND + + G K L+ + +
Sbjct: 180 KGA-YQLFIAREGRVANDGKRFTLTLRNGTGETSDPKKVENLHYRELDIYQYPRNVYQSI 238
Query: 247 RSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM-LVAMTLIAASVSL---EFSRSN 302
+ E KK H+ + +LI + L ++A +IAA ++ + RS
Sbjct: 239 VTSREYWKK--------ALHDKGRRGKLLYLIFVSLTPILAFGIIAA-LTFYNPRYQRSL 289
Query: 303 QPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+I + + KSG + A VI ++L I +L ++
Sbjct: 290 SIAVIFITALA-------VYLPAAILQKSGSVPLFIAL---VIFLLALGIFLLRRR 335
>gi|291276764|ref|YP_003516536.1| YjgP/YjgQ family permease [Helicobacter mustelae 12198]
gi|290963958|emb|CBG39797.1| putative integral membrane protein, permease YjgP/YjgQ family
[Helicobacter mustelae 12198]
Length = 338
Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 51/133 (38%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F + + V+ L I N + + + ++ +P + II
Sbjct: 5 YLFGSIAQIFFPFFIVLFFISSVVLLISIAN-ITLVVKMNFMDLLLVFLYLMPGTVFFII 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P ++ L+ EL++ ++G+S ++L F+ + ++ + + +
Sbjct: 64 PITFFAACVLGLSRLSFDYELLVFFSLGVSPRKILAYFIPIAGIVSLVLLFFSLALIPLS 123
Query: 128 EKIGIDLIQQWKD 140
+ D I + +
Sbjct: 124 KSAYSDFIAEKRT 136
>gi|157829182|ref|YP_001495424.1| hypothetical protein A1G_07385 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|157801663|gb|ABV76916.1| hypothetical protein A1G_07385 [Rickettsia rickettsii str. 'Sheila
Smith']
Length = 338
Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 48/321 (14%), Positives = 123/321 (38%), Gaps = 17/321 (5%)
Query: 48 ISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVV 107
+ L +P ++ ++P I ++ I ++ NL +L+I +A G++ QL P +
Sbjct: 23 VMDFFSLIVLVLPTLLFILLPVIMVITVIYIYNNLKVERQLIILQASGVNNVQLALPALY 82
Query: 108 GSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK 167
++++ + + + I + K+N S +I + +DI +
Sbjct: 83 VALIVMLLAYYISSTILPLSHINLKSRLNFIKNN---YISSMIEEKTFNKVTKDITVFID 139
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDK 223
K +I + A + + +L K + +Y
Sbjct: 140 KKSA-GNIMNGVIIFDNRNADNP-SVVFAGSGTLNIYDNSPIFELNKGIRQEYDVNGNLT 197
Query: 224 NSTTLNIPIKMD-----GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
T ++ IK+ Q+ + +Y I + ++ + I + + + I
Sbjct: 198 QLTFDSLMIKLQNDNPLVSQRTKHNKEANEYY-ISELLAPPHDLAITKKIKLIAEAHQRI 256
Query: 279 VIPLMLVAMTLIAASVSLEFSRSNQPRII-VAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
+ PL + +A +V L + S + + V + + ++ +I I+++F L +
Sbjct: 257 IWPLYNFVLPFVALAVFLRYPYSKKTTFMPVLFSALTVLLVTSIHFILQNFASKN-LDFI 315
Query: 338 AAALIPVILTISLSILILLQK 358
A +++ +++ + + ++K
Sbjct: 316 FACYFNLVIALTIGLYLFVRK 336
>gi|111115642|ref|YP_710260.1| hypothetical protein BAPKO_0860 [Borrelia afzelii PKo]
gi|110890916|gb|ABH02084.1| hypothetical protein BAPKO_0860 [Borrelia afzelii PKo]
Length = 429
Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + K L L + F+ + + + + + +P++I
Sbjct: 11 YIITEFFKYFLITFLFFFFVFFINQILFFMRILLQN-YVPFFKAFIFIIYSLPMVIALSP 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGS 109
PF +L+ I+ +E++ R+IGISI+ LL PF
Sbjct: 70 PFASLISVILTIHKFKIHNEILAFRSIGISIFDLLIPFFKLG 111
Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 40/101 (39%)
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ N+S + +FY I +PL ++ +A S+ L ++ + + I
Sbjct: 326 YQNRSMNQNLALFNLEFYQKISLPLSVLFFIFLAFSMGLYSNKKYSIILELVISIIICVF 385
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + K + P+ ++P ++ I ++ L+
Sbjct: 386 YWVMFIGGKVYTVQYAPNPIIVTILPNLILIIAGAILFLRL 426
>gi|326316899|ref|YP_004234571.1| permease YjgP/YjgQ family protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323373735|gb|ADX46004.1| permease YjgP/YjgQ family protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 365
Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 43/296 (14%), Positives = 105/296 (35%), Gaps = 9/296 (3%)
Query: 41 GELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQ 100
+ + S ++ V + I+ V + + R SE+VI A G +
Sbjct: 38 ASRGSVNPSDVMLVMGFTVLGQLPTILTLSLFVAVVGALARMYRESEMVIWFASGRGMLH 97
Query: 101 LLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ 160
LL P + + + + + I + +L Q++ D + I P +
Sbjct: 98 LLPPLLRFAWPVILAIATLALLIWPWANQQIQELKVQYEQRSDVDR--IAPGEFQESANG 155
Query: 161 DIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIP 220
+ P+N + + + + + A A + + + + R+
Sbjct: 156 ARVFFIDRETPDNQQATNVFIASSEHGRETVT--SARSARLETQGSQ-RMALLSDGQRLE 212
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSN-KSNIFHNYRAETQFYFLIV 279
+ L + + + +S S +K S + ++ +RAE + F +
Sbjct: 213 TTLDKPGLKVSEFTEYGTRVGGAASSSSDDAAVKTRSTAQLFASSDPVFRAELGWRFGLA 272
Query: 280 IPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILL 335
L + ++ +V+ R+ + +V +F+ + Y ++T +++ +G L
Sbjct: 273 --LAALNFVVLGLAVASANPRAARSTSLVF-ALFAFVVYYNLMTFGQNWVGAGRLS 325
>gi|224534174|ref|ZP_03674754.1| conserved hypothetical integral membrane protein [Borrelia
spielmanii A14S]
gi|224514599|gb|EEF84913.1| conserved hypothetical integral membrane protein [Borrelia
spielmanii A14S]
Length = 429
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y + K L L + F+ + + + + + +P++I
Sbjct: 11 YIIAEFFKYFLITFLFFFFVFFINQILFFMRILLQN-YVPFFKAFIFIIYSLPMVIALSP 69
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGS 109
PF +L+ I+ +E++ R+IGISI+ LL PF
Sbjct: 70 PFASLISVILTIHKFKIHNEILAFRSIGISIFDLLVPFFKLG 111
Score = 40.6 bits (94), Expect = 0.35, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 40/100 (40%)
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ ++S + +FY I +PL ++ +A S+ L +R + + I
Sbjct: 326 YQDRSMKQNLALFNLEFYQKISLPLSVLFFIFLAFSMGLYSNRKYSIILELVISIIICVF 385
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
+ + K + P+ ++P ++ I ++ L+
Sbjct: 386 YWVMFIGGKVYTVQYAPNPIIVTILPNLILIIAGAILFLR 425
>gi|213163295|ref|ZP_03349005.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhi str. E00-7866]
Length = 137
Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 39/98 (39%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 34 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 93
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN 141
+V ++ GI + + K +++ + K N
Sbjct: 94 AAMVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKAN 131
>gi|240127075|ref|ZP_04739736.1| hypothetical protein NgonS_00198 [Neisseria gonorrhoeae SK-93-1035]
gi|268685430|ref|ZP_06152292.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|268625714|gb|EEZ58114.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
Length = 371
Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 32/265 (12%), Positives = 82/265 (30%), Gaps = 5/265 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I R K T + + + ++ + ++ + +I L V +
Sbjct: 2 IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLDRAAD-GRVAIDAVLALVGFWVIGMT 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + + V R SE+ + + G+++ Q + P + ++ I ++ +
Sbjct: 61 PLLLVLTAFISTLTVLTCYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWV 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
E + + K + + + + ++ + E+ I ++
Sbjct: 121 IPWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVY-FVETFDTESGIMKNLFLRE 179
Query: 184 IDKKNKIIHRKDADLAI--IYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFS 241
DK + A + ++K L+ Y+Y P + ++
Sbjct: 180 QDKNGG-DNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTP 238
Query: 242 EQFASRSFYEIIKKMSFSNKSNIFH 266
+ S I SN H
Sbjct: 239 KLIDPVSHRRTISTAQLIGSSNPQH 263
>gi|296118847|ref|ZP_06837423.1| cell division protein FtsX [Corynebacterium ammoniagenes DSM 20306]
gi|295968336|gb|EFG81585.1| cell division protein FtsX [Corynebacterium ammoniagenes DSM 20306]
Length = 300
Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 9/126 (7%)
Query: 30 VIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELV 89
++D E + N + +LA Q I I L+ N+V NR++E+
Sbjct: 155 IVDQVEEVRSATDNLNSIRNATFLLA-------FVQAIAAIFLIANMVQIAAFNRSTEIG 207
Query: 90 ISRAIGISIWQLLNPFVVGSILLGIFTVLV--INPIATSGEKIGIDLIQQWKDNGDKQKS 147
I R +G S W PFV+ ++L + V++ + A I L ++
Sbjct: 208 IMRMVGASRWITQAPFVLEAVLASVIGVILAGLGVFAAKSTIIDSALASLYQSQLLAPIQ 267
Query: 148 DIIPWM 153
W+
Sbjct: 268 TADIWV 273
>gi|311104770|ref|YP_003977623.1| hypothetical protein AXYL_01570 [Achromobacter xylosoxidans A8]
gi|310759459|gb|ADP14908.1| hypothetical protein AXYL_01570 [Achromobacter xylosoxidans A8]
Length = 367
Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 53/150 (35%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
+ + + +++V++ L N VLAA + I+ +
Sbjct: 12 ITSHAGVVFSTLLIVWLSVLLVRLLGEAAGGNIGADVVVVLAALSTITALPTILAVSVFI 71
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
+ R SE+V+ A G+S+ L P + +I + + + A + +
Sbjct: 72 AVLTTVTRNYRESEMVVWFASGLSLADWLRPVLRVAIPVALAVAGLTLVAAPWAYRQIGE 131
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++++ D K + + S + F
Sbjct: 132 YHERFEQRSDLSKVTAGQFAESSGGNRVFF 161
>gi|317014475|gb|ADU81911.1| hypothetical protein HPGAM_05615 [Helicobacter pylori Gambia94/24]
Length = 345
Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S + FV S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|261838424|gb|ACX98190.1| integral membrane protein [Helicobacter pylori 51]
Length = 345
Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S + FV S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|307637757|gb|ADN80207.1| integral membrane protein [Helicobacter pylori 908]
Length = 345
Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S + FV S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|210135251|ref|YP_002301690.1| integral membrane protein [Helicobacter pylori P12]
gi|210133219|gb|ACJ08210.1| integral membrane protein [Helicobacter pylori P12]
Length = 345
Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S + FV S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|325996358|gb|ADZ51763.1| integral membrane protein [Helicobacter pylori 2018]
gi|325997946|gb|ADZ50154.1| hypothetical protein hp2017_1044 [Helicobacter pylori 2017]
Length = 345
Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S + FV S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|208434987|ref|YP_002266653.1| hypothetical protein HPG27_1034 [Helicobacter pylori G27]
gi|298735907|ref|YP_003728432.1| hypothetical protein HPB8_411 [Helicobacter pylori B8]
gi|208432916|gb|ACI27787.1| hypothetical protein HPG27_1034 [Helicobacter pylori G27]
gi|298355096|emb|CBI65968.1| conserved hypothetical protein [Helicobacter pylori B8]
gi|317012864|gb|ADU83472.1| hypothetical protein HPLT_05405 [Helicobacter pylori Lithuania75]
Length = 345
Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S + FV S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|254779645|ref|YP_003057751.1| hypothetical protein HELPY_1062 [Helicobacter pylori B38]
gi|254001557|emb|CAX29575.1| Conserved hypothetical protein; putative membrane protein; putative
signal peptide [Helicobacter pylori B38]
Length = 345
Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S + FV S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|108563456|ref|YP_627772.1| hypothetical protein HPAG1_1031 [Helicobacter pylori HPAG1]
gi|107837229|gb|ABF85098.1| conserved hypothetical integral membrane protein [Helicobacter
pylori HPAG1]
Length = 345
Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S + FV S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|34581065|ref|ZP_00142545.1| hypothetical protein [Rickettsia sibirica 246]
gi|28262450|gb|EAA25954.1| unknown [Rickettsia sibirica 246]
Length = 338
Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 47/321 (14%), Positives = 120/321 (37%), Gaps = 17/321 (5%)
Query: 48 ISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVV 107
+ L +P ++ ++P I ++ I ++ NL +L+I + G++ QL P +
Sbjct: 23 VMDFFSLIVLVLPTLLFILLPVIMVITVIYIYNNLKVERQLIILQTSGVNNVQLALPALY 82
Query: 108 GSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAK 167
++++ + + + I + K+N S +I + +DI +
Sbjct: 83 VALIVMLLAYYISSNILPLSHINLKSRLNFIKNN---YISSMIEEKTFNKVTKDITVFID 139
Query: 168 KILPENHIWEDFTSITIDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDK 223
K +I + A + + +L K + +Y
Sbjct: 140 KKSA-GNIMNGVIIFDNRNADNP-SVVFAGSGTLNIYDNSPIFELNKGIRQEYDVNGNLT 197
Query: 224 NSTTLNIPIKMD-----GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
T ++ IK+ Q+ + +Y I + ++ + I + + + I
Sbjct: 198 QLTFDSLMIKLQNDNPLVSQRTKHNKEANEYY-ISELLAPPHDLAITKKIKLIAEAHQRI 256
Query: 279 VIPLMLVAMTLIAASVSLE-FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
+ PL + +A +V L R + V + + ++ +I I+++F L +
Sbjct: 257 IWPLYNFVLPFVALAVFLRYPYRKKTTFMPVLFSALTVLLVTSIHFILQNFASKN-LDFI 315
Query: 338 AAALIPVILTISLSILILLQK 358
A +++ +++ + + ++K
Sbjct: 316 FACYFNLVIALTIGLYLFVRK 336
>gi|261839824|gb|ACX99589.1| hypothetical protein HPKB_1021 [Helicobacter pylori 52]
gi|315586981|gb|ADU41362.1| conserved hypothetical protein [Helicobacter pylori 35A]
gi|317182344|dbj|BAJ60128.1| hypothetical protein HPF57_1054 [Helicobacter pylori F57]
Length = 345
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S + FV S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|308184829|ref|YP_003928962.1| hypothetical protein HPSJM_05385 [Helicobacter pylori SJM180]
gi|308060749|gb|ADO02645.1| hypothetical protein HPSJM_05385 [Helicobacter pylori SJM180]
Length = 345
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S + FV S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|216263485|ref|ZP_03435480.1| conserved hypothetical integral membrane protein [Borrelia afzelii
ACA-1]
gi|215980329|gb|EEC21150.1| conserved hypothetical integral membrane protein [Borrelia afzelii
ACA-1]
Length = 390
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 46 YSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPF 105
+ + +P++I PF +L+ I+ +E++ R+IGISI+ LL PF
Sbjct: 9 VPFFKAFIFIIYSLPMVIALSPPFASLISVILTIHKFKIHNEILAFRSIGISIFDLLIPF 68
Query: 106 VVGS 109
Sbjct: 69 FKLG 72
Score = 37.5 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 40/101 (39%)
Query: 258 FSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFM 317
+ N+S + +FY I +PL ++ +A S+ L ++ + + I
Sbjct: 287 YQNRSMNQNLALFNLEFYQKISLPLSVLFFIFLAFSMGLYSNKKYSIILELVISIIICVF 346
Query: 318 LYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQK 358
+ + K + P+ ++P ++ I ++ L+
Sbjct: 347 YWVMFIGGKVYTVQYAPNPIIVTILPNLILIIAGAILFLRL 387
>gi|317009699|gb|ADU80279.1| hypothetical protein HPIN_05385 [Helicobacter pylori India7]
Length = 345
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S + FV S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|217977121|ref|YP_002361268.1| permease YjgP/YjgQ family protein [Methylocella silvestris BL2]
gi|217502497|gb|ACK49906.1| permease YjgP/YjgQ family protein [Methylocella silvestris BL2]
Length = 380
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 31/207 (14%), Positives = 70/207 (33%), Gaps = 11/207 (5%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAAT--R 58
MP +L Y K T L I + + L LP +I G + A
Sbjct: 1 MPRLLTLYLAKRIGVTALLIEAMLCIPLVMTSL------FQTLPAAAIRGGLLWPALLGT 54
Query: 59 VPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVL 118
+P ++ +P V + F ++ + + +I +S+W L P ++ +
Sbjct: 55 LPTVLYLALPLSVGVAVALEFSRMSSDGMIAVLYSIRLSVWSLCLPALIVAAAAVGAGYA 114
Query: 119 VINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWED 178
+ + IA S D+I +++ + + + + + +F + +
Sbjct: 115 LSSYIAPSYVGQMHDVIHVIRNSLNHRMLEPAHFYTFDKGARTMFFQRWRSAD---VAAG 171
Query: 179 FTSITIDKKNKIIHRKDADLAIIYNDK 205
+ +A+ A ++
Sbjct: 172 MFIYQYSAEKNEEQIINAEEAEFRRNE 198
>gi|317180825|dbj|BAJ58611.1| hypothetical protein HPF32_1029 [Helicobacter pylori F32]
Length = 345
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S + FV S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSAYYGFLRQKKD 136
>gi|88703588|ref|ZP_01101304.1| Predicted permease YjgP/YjgQ family protein [Congregibacter
litoralis KT71]
gi|88702302|gb|EAQ99405.1| Predicted permease YjgP/YjgQ family protein [Congregibacter
litoralis KT71]
Length = 362
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 37/308 (12%), Positives = 95/308 (30%), Gaps = 15/308 (4%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y L TL + ++ + + + + R+P ++ ++
Sbjct: 6 YLAGDVLGHTLAVSSVLLAIILTGRFVKYLAEAAS-GKLAAEILLPVMFYRLPGFLELLL 64
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + ++ + L SE+VI A G+ +L + + ++L+ + + + G
Sbjct: 65 PLGLFIGILMSYGRLYVESEMVILSACGVGPAKLASFTLAPALLIMLVVAGLSLLVTPQG 124
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDK- 186
L+ + Q + A I PE + +
Sbjct: 125 VARSEALLNDPQALQGLQLLAAGRF--QPRGDDGTVTYAADIDPEAGELDQVFLYAPEDR 182
Query: 187 --KNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKF 240
++ A + + L+ Y++ P + + Q+
Sbjct: 183 TADTEVAGVTVARRGSVVVDPESGVRYLELRDGYRFSGTPGRADYRIVRFG---TFGQRL 239
Query: 241 SEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSR 300
+ + + K + + + N ++ + + LM+ + L+A S+S R
Sbjct: 240 PDTPSMARSEPVDAKPTAALLDS--DNAEDRAALHWRLSVALMVPVVALLALSLSKTNHR 297
Query: 301 SNQPRIIV 308
+ +
Sbjct: 298 RGRYIKLA 305
>gi|254456522|ref|ZP_05069951.1| putative permease, YjgP/YjgQ family [Candidatus Pelagibacter sp.
HTCC7211]
gi|207083524|gb|EDZ60950.1| putative permease, YjgP/YjgQ family [Candidatus Pelagibacter sp.
HTCC7211]
Length = 362
Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 66/160 (41%), Gaps = 4/160 (2%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
L L+ A I+++V + M E S S + P II ++ PFI
Sbjct: 4 FLIALISAGIVIWVFQAVNFLDIMIE-DGRSYSVYISYSLLNFPKIINKLFPFILFFSLF 62
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V +EL+I GI+ QL+N S++L + ++ I + + ++
Sbjct: 63 YVTIKYENNNELIIFWNFGINKIQLINFIFKFSVILMLIQLIFSAIIVPKSQDLARSFLR 122
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIW 176
N + + I + ++ +++ I +++ + +++
Sbjct: 123 SSTVNFYE---NFIKPKRFNDTIKNVTIFSERKDIDGNLY 159
>gi|126736391|ref|ZP_01752133.1| hypothetical protein RCCS2_01329 [Roseobacter sp. CCS2]
gi|126714212|gb|EBA11081.1| hypothetical protein RCCS2_01329 [Roseobacter sp. CCS2]
Length = 369
Score = 46.8 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 38/320 (11%), Positives = 99/320 (30%), Gaps = 31/320 (9%)
Query: 18 LYFLLGAMILVFVIDL-----NEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITL 72
L L G LV ++ + +Q+ S A +P +++ +P
Sbjct: 5 LMVLFGFFSLVLILIYWINRAVVLFDQLIA-DGQSAGVFLEFTALSLPSVMRLALPLAAF 63
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
+ V ++ SEL + +A G S ++L P + I++ + +++ +
Sbjct: 64 AAAVYVTNRMSTESELTVVQATGYSPFRLARPVLYFGIIVALMMSALMHFLVPMSAARLA 123
Query: 133 DLIQQWKDNGDKQK----------SDIIPWMQISNPQQ---DIFIGAKKILPENHIWEDF 179
D + N + + + +++ P DIF+ + E +
Sbjct: 124 DRQAEIAQNITARLLTEGQFLEPINGVTFYIRDITPAGELQDIFLSDTRSDAEQVTYTAT 183
Query: 180 TSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQK 239
+ + + I ++ L+ + + D ++ + +
Sbjct: 184 KAFLVRDNDTIQLV------MLDGMVQTLRTENQRLFTTTFDDFAYNISDLIRQPRNRGR 237
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSL--E 297
+ +E++ R + + ++ + L+ S +
Sbjct: 238 RDAYLFT---WELLNPTPALEAETGRDAARLISLGHDRFSQSILGIVAALLGFSALMVGG 294
Query: 298 FSRSNQPRIIVAYGIFSGFM 317
+SR + IF +
Sbjct: 295 YSRFG-VWKQIIGAIFLIIV 313
>gi|207109665|ref|ZP_03243827.1| hypothetical protein HpylH_10769 [Helicobacter pylori
HPKX_438_CA4C1]
Length = 109
Score = 46.8 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L+R+ YY K L LL + ID + ++M + S + + + +
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFFVGIDSLKYADKMPD----SANMIILFFTYDILFALN 58
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF 115
+P L+ ++ + + ++++ +IG S Q+L+P + S+
Sbjct: 59 YTLPISLLLAMVLFYISFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAV 109
>gi|218661972|ref|ZP_03517902.1| putative permease protein [Rhizobium etli IE4771]
Length = 115
Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L Y + + L LL + +++ + + N + + SI A LA +P I
Sbjct: 12 KLLETYILRGVGQMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPSI 70
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVV 107
I ++PF ++ +N SEL + A G L+ P ++
Sbjct: 71 IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSILIRPILL 115
>gi|218516795|ref|ZP_03513635.1| putative permease protein [Rhizobium etli 8C-3]
Length = 102
Score = 46.4 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L Y + + L LL + +++ + + N + + SI A LA +P I
Sbjct: 12 KLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTD-SGQSIGSFAKLATMILPSI 70
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAI 94
I ++PF ++ +N SEL + A
Sbjct: 71 IPVVLPFALVIAITQTLTTMNNDSELTVIDAA 102
>gi|15644990|ref|NP_207160.1| hypothetical protein HP0362 [Helicobacter pylori 26695]
gi|2313464|gb|AAD07430.1| conserved hypothetical integral membrane protein [Helicobacter
pylori 26695]
Length = 345
Score = 46.4 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Query: 8 YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQII 67
Y F + F L + ++ L I + + + S L +P I I+
Sbjct: 5 YLFMAVSQVFFSFFLVLFFISSIVLLISIAS-VTLVIKVSFLDLVQLFLYSLPGTIFFIL 63
Query: 68 PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
P + L+ EL++ ++G+S ++ F S+L+ ++ + +
Sbjct: 64 PITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKVFAPLSLLVSAILLVFSLILIPTS 123
Query: 128 EKIGIDLIQQWKD 140
+ ++Q KD
Sbjct: 124 KSTYYGFLRQKKD 136
>gi|84622418|ref|YP_449790.1| hypothetical protein XOO_0761 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188578607|ref|YP_001915536.1| putative permease, YjgP/YjgQ family [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|58425052|gb|AAW74089.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84366358|dbj|BAE67516.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188523059|gb|ACD61004.1| putative permease, YjgP/YjgQ family [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 360
Score = 46.4 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 45/371 (12%), Positives = 113/371 (30%), Gaps = 37/371 (9%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + ++ L L+ +++ L +I + + + +
Sbjct: 4 LDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIAD-GRIPARLLLSQVGLQFVAYLP 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I+P ++ ++ L R SE+ + AIG+ ++L P ++ + + + L +
Sbjct: 63 IILPLALMLGLLLALARLYRDSEMAVITAIGVGPTRMLRPLLMLVVPVVVVIGLCSLWLG 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ +++ + + + +S+ + + I +
Sbjct: 123 PWASRTAEAMLEDANRSVLMAGLESGQFTPLSDGG---VVYMQTISADGKGLGKIFLQR- 178
Query: 185 DKKNKIIHRKDADLAII-----YNDKVKLKKVVEYQY--GRIPIDKNSTTLNIPIKMDGF 237
++N I AD + + + L + G +D
Sbjct: 179 -QQNDRIDVVTADRGALFFEGKTDRYLHLDDGYRTEGPAGGATLDYRLMKFASSDIALPD 237
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLE 297
+ + +S + Q + + PL+ +A ++ +S
Sbjct: 238 RTRLHDANDPEVMWTTQLLSDERPAA-------RAQLHERLAPPLLALAFAMLTLPLSRS 290
Query: 298 FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK----SGILLPVAAAL---IPVILTISL 350
R + I+ F+ Y + T + G +G +P L
Sbjct: 291 APRQQRYGRIMLA-----FLAYMVGTNLMIVGTQWIANGKAPAALGLWWLTLP-----LL 340
Query: 351 SILILLQKEDG 361
++ + DG
Sbjct: 341 AVAVWAYARDG 351
>gi|323163036|gb|EFZ48869.1| hypothetical protein ECE128010_0632 [Escherichia coli E128010]
Length = 150
Score = 46.4 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 2/130 (1%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVPLIIQQIIPFITLVVNI 76
L+ L+F+ Q + E N +++ VL +V + ++ ++P V
Sbjct: 15 LVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVG 74
Query: 77 VVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
V + SE+ A G S +L + +I L IF L+ L Q
Sbjct: 75 VTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQ 134
Query: 137 QWKDNGDKQK 146
Q + D ++
Sbjct: 135 QSQSELDVRQ 144
>gi|332284928|ref|YP_004416839.1| hypothetical protein PT7_1675 [Pusillimonas sp. T7-7]
gi|330428881|gb|AEC20215.1| hypothetical protein PT7_1675 [Pusillimonas sp. T7-7]
Length = 371
Score = 46.0 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 22/178 (12%), Positives = 55/178 (30%), Gaps = 9/178 (5%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ LA + I+ + + R SE+V+ A G+S+ +
Sbjct: 42 GTIGANVVFGLATFSSITALPVILSVSLFIAVLTTVTRNFRESEMVVWFASGLSLKDWIR 101
Query: 104 PFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
P + ++ + I ++ + + + Q+++ D K + I
Sbjct: 102 PVLRCAVPVAIIIAVLTLVASPWAYRQISEYRQRFEQRSDLSKVTAGQF--IETEDGARV 159
Query: 164 IGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII-----YNDKVKLKKVVEYQY 216
A++ + + + + + A+ A I + + L Y
Sbjct: 160 FFAEEPNEPGEEMGNVIARVVTPEW--LSVVTAESARIQTEENGDRFLVLTDGHRYDL 215
>gi|149907704|ref|ZP_01896451.1| hypothetical protein PE36_07442 [Moritella sp. PE36]
gi|149809374|gb|EDM69303.1| hypothetical protein PE36_07442 [Moritella sp. PE36]
Length = 361
Score = 45.6 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 4/118 (3%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
+K+ + L ++ + +++ + + +P + I+P +
Sbjct: 1 MKSQVAVLFILSLIFVSQQFVALLSKVMT-GALPANLVMEMLLYTMPALGTLILPVSLFI 59
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQL---LNPFVVGSILLGIFTVLVINPIATSGE 128
+ L SE+VI A G + ++ +I L F + P A G
Sbjct: 60 GILFAHGRLYAESEMVILTACGYTPSRILMSSLLLSSVTIGLVAFNAFIYAPTAEEGR 117
>gi|91206136|ref|YP_538491.1| putative permeases [Rickettsia bellii RML369-C]
gi|91069680|gb|ABE05402.1| Putative permeases [Rickettsia bellii RML369-C]
Length = 360
Score = 45.6 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 53/370 (14%), Positives = 133/370 (35%), Gaps = 28/370 (7%)
Query: 4 ILWR-YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L+R YF K L + LV++ + ++ + + L +P +
Sbjct: 2 LLYRKYFIKNILPLLIVITFSMTSLVWITQVLKLLYLFDK--GIKVMDFLSLIILVLPTL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++P IT++ I ++ NL +L+I + G+ QL P + ++++ + + +
Sbjct: 60 LFILLPIITVITIIYIYNNLKIERQLIILQTSGVGNLQLALPALYVALIVALLAYYISST 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + K+N S +I + +DI + K ++ +
Sbjct: 120 VMPLSHINLKSRLSFIKNN---YISSMIEEKTFNKITKDITVYIDKKST-GNVMKGVIIF 175
Query: 183 TIDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF- 237
+ A+ I+ + +L K +Y T ++ IK+
Sbjct: 176 DNRNTDNP-SVVFANSGILNIHENDPIFELSKGSRQEYDINGNITQLTFDSLMIKLQNDN 234
Query: 238 ----QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
Q+ + + +Y I + + N + + + I+ PL + +A +
Sbjct: 235 PLISQRTTHNKEANEYY-IEELLEPPVDLNPMKKIKLIAEAHQRIIWPLYNFVLPFLALA 293
Query: 294 VSLEFSRSNQPRII-----VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
V L++ S + + + + +T+ L + A + + +
Sbjct: 294 VFLKYPYSKKTTFMPILFAALSVLIATSAHFTLQNFASK-----NLAFITACYLNIFFIL 348
Query: 349 SLSILILLQK 358
S+ + + ++K
Sbjct: 349 SIGLYLFIRK 358
>gi|315452594|ref|YP_004072864.1| Integral membrane protein [Helicobacter felis ATCC 49179]
gi|315131646|emb|CBY82274.1| Integral membrane protein [Helicobacter felis ATCC 49179]
Length = 348
Score = 45.2 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 39/101 (38%)
Query: 47 SISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFV 106
S L +P + IIP ++ L+ EL++ ++GI+ Q++ F+
Sbjct: 45 SALDLLQLYFYLLPGTLFFIIPITFFGACVIGLARLSYDHELLVFFSLGIAPRQIVRAFL 104
Query: 107 VGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKS 147
+++ ++ + + + ++ K+ D
Sbjct: 105 PLCLVVSALLLVFSLILVPASKSAYYSFLRDKKERVDVNIQ 145
>gi|157826432|ref|YP_001495496.1| putative permeases [Rickettsia bellii OSU 85-389]
gi|157801736|gb|ABV78459.1| Putative permeases [Rickettsia bellii OSU 85-389]
Length = 360
Score = 45.2 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 53/370 (14%), Positives = 133/370 (35%), Gaps = 28/370 (7%)
Query: 4 ILWR-YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L+R YF K L + LV++ + ++ + + L +P +
Sbjct: 2 LLYRKYFIKNILPLLIVITFSMTSLVWITQVLKLLYLFDK--GIKVMDFLSLIILVLPTL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++P IT++ I ++ NL +L+I + G+ QL P + ++++ + + +
Sbjct: 60 LFILLPIITVITIIYIYNNLKIERQLIILQTSGVGNLQLALPALYVALIVALLAYYISST 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
+ + K+N S +I + +DI + K ++ +
Sbjct: 120 VMPLSHINLKSRLSFIKNN---YISSMIEEKTFNKITKDITVYIDKKST-GNVMKGVIIF 175
Query: 183 TIDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF- 237
+ A+ I+ + +L K +Y T ++ IK+
Sbjct: 176 DNRNTDNP-SVVFANSGILNIYENDPIFELSKGSRQEYDINGNITQLTFDSLMIKLQNDN 234
Query: 238 ----QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
Q+ + + +Y I + + N + + + I+ PL + +A +
Sbjct: 235 PLISQRTTHNKEANEYY-IEELLEPPVDLNPMKKIKLIAEAHQRIIWPLYNFVLPFLALA 293
Query: 294 VSLEFSRSNQPRII-----VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTI 348
V L++ S + + + + +T+ L + A + + +
Sbjct: 294 VFLKYPYSKKTTFMPILFAALSVLIATSAHFTLQNFASK-----NLAFITACYLNIFFIL 348
Query: 349 SLSILILLQK 358
S+ + + ++K
Sbjct: 349 SIGLYLFIRK 358
>gi|167947877|ref|ZP_02534951.1| hypothetical protein Epers_15577 [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 109
Score = 45.2 bits (106), Expect = 0.017, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 30/63 (47%)
Query: 82 LNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN 141
++R SE++ +A G+ W++ P ++ ++ + + + + G ++ ++I K
Sbjct: 1 MHRDSEMIALQACGVGGWRVFRPILMAAVPMALLVAWLSMVVEPWGTRLKAEIIAAQKGQ 60
Query: 142 GDK 144
Sbjct: 61 TSA 63
>gi|294341186|emb|CAZ89587.1| putative permease YjgP/YjgQ [Thiomonas sp. 3As]
Length = 377
Score = 44.8 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 26/196 (13%), Positives = 60/196 (30%), Gaps = 5/196 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L + + +V + L I Q + S +L +
Sbjct: 2 LLDLTLRREMSRNFGGAFTVLFTVVITLMLIRILGQASD-GQASPQDVFLLIGLTALSYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q +I + ++ F + SE+ I R G+ +L+ + S + + +
Sbjct: 61 QIVITLSLFLAVLLTFTRMWLDSEMTIWRTTGVGRLRLMISVLRFSWPILLLIAALTLFA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L +++ D + + + ++ ++ FI K + D
Sbjct: 121 WPWANQQSTALRIRFEQRSDISRVAPGQFRESASGKRVFFI--DKGAQAGGVAHDI--FI 176
Query: 184 IDKKNKIIHRKDADLA 199
D + A A
Sbjct: 177 RDDTSGQTVLITARSA 192
>gi|296137009|ref|YP_003644251.1| permease YjgP/YjgQ family protein [Thiomonas intermedia K12]
gi|295797131|gb|ADG31921.1| permease YjgP/YjgQ family protein [Thiomonas intermedia K12]
Length = 377
Score = 44.8 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 26/196 (13%), Positives = 60/196 (30%), Gaps = 5/196 (2%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
+L + + +V + L I Q + S +L +
Sbjct: 2 LLDLTLRREMSRNFGGAFTVLFTVVITLMLIRILGQASD-GQASPQDVFLLIGLTALSYL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
Q +I + ++ F + SE+ I R G+ +L+ + S + + +
Sbjct: 61 QIVITLSLFLAVLLTFTRMWLDSEMTIWRTTGVGRLRLMVSVLRFSWPILLLIAALTLFA 120
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L +++ D + + + ++ ++ FI K + D
Sbjct: 121 WPWANQQSTALRIRFEQRSDISRVAPGQFRESASGKRVFFI--DKGAQAGGVAHDI--FI 176
Query: 184 IDKKNKIIHRKDADLA 199
D + A A
Sbjct: 177 RDDTSGQTVLITARSA 192
>gi|289678194|ref|ZP_06499084.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae FF5]
Length = 284
Score = 44.8 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 44/272 (16%), Positives = 88/272 (32%), Gaps = 22/272 (8%)
Query: 95 GISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ 154
G S +LL + + L+G+ + +A G LI Q + + ++P
Sbjct: 1 GRSQQRLLAITMGPATLVGLLVAWLSFSLAPQGATQFSLLINQQ--DAMTEFDTLVPGRF 58
Query: 155 ISNPQQDIFIGAKKILPENHIWEDFTS----ITIDK-KNKIIHRKDADLAIIY-----ND 204
+ K++ + ++ DK K+ I A+ +
Sbjct: 59 QALRDGTRITYTKELSEDRSQLAGVFISEKRMSSDKSKDNGITVLVAEKGHQEVRPNGSR 118
Query: 205 KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNI 264
+ L+ Y D + M + SE+ R + +
Sbjct: 119 FLILENGYRYDGNPGAADYRVIKYDTYGAMLPKPEISEEITDREAIPTSELI-------G 171
Query: 265 FHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI 324
R+ + + I +PL + +TL+A +S + + + I I+
Sbjct: 172 NPAPRSVAELQWRISLPLSVFIVTLMAIPLS-RVNPRQGRYLKLLPAILLYMSYLAILIS 230
Query: 325 MKSFGKSGILLPVAAALIPVILTISLSILILL 356
++S + G L + I LSI +LL
Sbjct: 231 VRSSLEKGKLPLSLGMWW--VHAIYLSIGLLL 260
>gi|121594280|ref|YP_986176.1| permease [Acidovorax sp. JS42]
gi|120606360|gb|ABM42100.1| permease YjgP/YjgQ family protein [Acidovorax sp. JS42]
Length = 363
Score = 44.5 bits (104), Expect = 0.027, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 52/162 (32%), Gaps = 4/162 (2%)
Query: 41 GELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQ 100
+ + S ++ V + I+ V + + R SE+VI + G +
Sbjct: 38 ASRGSVNPSDVMLVMGFTVLGQLPTILSLSLFVTVVGALSRMYRDSEMVIWFSAGRGLMS 97
Query: 101 LLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ 160
LL P S + + + + + +L Q++ D + I P +
Sbjct: 98 LLAPLFRFSWPVMLTIAALSLVVWPWANRQIQELKTQYEQRSDVDR--IAPGEFQESSNG 155
Query: 161 DIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY 202
K P+ + + T + + + A A +
Sbjct: 156 SRVFFIDKDAPDANSASNVFIATNEPNRETVT--SAQSARLE 195
>gi|167947882|ref|ZP_02534956.1| hypothetical protein Epers_15602 [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 95
Score = 44.5 bits (104), Expect = 0.028, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%)
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
++ +L +SELV RA G+S+ +++ + ++L + V V +A E+ +
Sbjct: 1 MIGLGSLASSSELVAMRAAGVSVSRIVGSVLKTGLVLLVVVVAVGEMLAPLSEQRAQRMK 60
Query: 136 QQWKDNGDKQK 146
+ +
Sbjct: 61 MEALSEPGRAA 71
>gi|222110917|ref|YP_002553181.1| permease yjgp/yjgq family protein [Acidovorax ebreus TPSY]
gi|221730361|gb|ACM33181.1| permease YjgP/YjgQ family protein [Acidovorax ebreus TPSY]
Length = 363
Score = 44.5 bits (104), Expect = 0.030, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 52/162 (32%), Gaps = 4/162 (2%)
Query: 41 GELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQ 100
+ + S ++ V + I+ V + + R SE+VI + G +
Sbjct: 38 ASRGSVNPSDVMLVMGFTVLGQLPTILSLSLFVTVVGALSRMYRDSEMVIWFSAGRGLMS 97
Query: 101 LLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ 160
LL P S + + + + + +L Q++ D + I P +
Sbjct: 98 LLAPLFRFSWPVMLTIAALSLVVWPWANRQIQELKTQYEQRSDVDR--IAPGEFQESSNG 155
Query: 161 DIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY 202
K P+ + + T + + + A A +
Sbjct: 156 SRVFFIDKDAPDANSASNVFIATNEPNRETVT--SAQSARLE 195
>gi|257457658|ref|ZP_05622825.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
gi|257445044|gb|EEV20120.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
Length = 229
Score = 43.7 bits (102), Expect = 0.041, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 45 NYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS 97
A+L +P +I PF L+ ++ E + A+GIS
Sbjct: 48 QAPFKDVALLMLYSLPAVIANAAPFAALIGTLMGIGRFVSDLEFLSMNALGIS 100
>gi|285019432|ref|YP_003377143.1| permease [Xanthomonas albilineans GPE PC73]
gi|283474650|emb|CBA17149.1| putative yjgp/yjgq family permease protein [Xanthomonas
albilineans]
Length = 361
Score = 43.7 bits (102), Expect = 0.041, Method: Composition-based stats.
Identities = 22/219 (10%), Positives = 75/219 (34%), Gaps = 17/219 (7%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + + ++ L+ +++ + + +G + + I + + + ++
Sbjct: 4 LDRYLLRDFFQSFSATLIVLLVVSVG---GVLVDVLGNIADGRIPAKLLFSQLGLQFVVY 60
Query: 65 QIIPFITLVVNIVVFFNLN----RTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+P I + ++ R SE+ + AIG+ +LL P ++ + + L
Sbjct: 61 --LPLILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRLLRPILMLVVPVVTLVGLCS 118
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ L+ + + + + ++ + + +
Sbjct: 119 LWLGPWADRTSDQLVNEANHSLLMAGLEAG---RFTSLPDGSIVYVSTLSGDGTRLSKV- 174
Query: 181 SITIDKKNKIIHRKDADLAIIYND----KVKLKKVVEYQ 215
+ K ++ A+ + ++L+ ++
Sbjct: 175 FVQRQKDGRLDVVTGQRGAMFFEGKAERYLRLEDGYRFE 213
>gi|32266101|ref|NP_860133.1| hypothetical protein HH0602 [Helicobacter hepaticus ATCC 51449]
gi|32262150|gb|AAP77199.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 339
Score = 43.7 bits (102), Expect = 0.042, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 4/126 (3%)
Query: 7 RYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQI 66
RY F + + F L + + V+ L +I + + S L +P + I
Sbjct: 4 RYLFMSFAQIFFPFFLVLLFIASVVLLIDIAGRT-YVIKMSFIDLGTLFLYLIPGSLFFI 62
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIG---ISIWQLLNPFVVGSILLGIFTVLVINPI 123
IP ++ L EL++ ++G + I + P + + ++ LV+ P+
Sbjct: 63 IPITFFAALVLSVAKLTYDYELMVCFSLGAKPLDIVKFFLPITLLATIILFVFSLVMLPL 122
Query: 124 ATSGEK 129
A S K
Sbjct: 123 ANSASK 128
>gi|224438206|ref|ZP_03659141.1| hypothetical protein HcinC1_09510 [Helicobacter cinaedi CCUG 18818]
Length = 339
Score = 43.7 bits (102), Expect = 0.045, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 4/128 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y F + + F L + V+ L +I + + S L +P +
Sbjct: 2 LKKYLFSSFAQIFFPFFLVLFFIASVVLLIDIAGRT-YVVKMSFLDLGTLFMYLIPSSLF 60
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIG---ISIWQLLNPFVVGSILLGIFTVLVIN 121
IIP ++ L EL++ ++G + + + P + + L+ ++
Sbjct: 61 FIIPITFFAALVLGISRLAYDYELMVCFSLGSKPLDMVRFFLPITLLATLVLFVFSFILL 120
Query: 122 PIATSGEK 129
P+ TS K
Sbjct: 121 PLTTSASK 128
>gi|289678195|ref|ZP_06499085.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae FF5]
Length = 95
Score = 43.7 bits (102), Expect = 0.046, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I++RY + L T ++ + + Q ++ R+P +
Sbjct: 2 IVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAAS-GALDPGVLFLIMGFRLPGFL 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS 97
Q I+P + ++ + L SE+ + A G+S
Sbjct: 61 QVILPLGLFLGILMAYGRLYLESEMTVLAATGMS 94
>gi|313144652|ref|ZP_07806845.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313129683|gb|EFR47300.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 341
Score = 43.7 bits (102), Expect = 0.049, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 4/128 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L +Y F + + F L + V+ L +I + + S L +P +
Sbjct: 4 LKKYLFSSFAQIFFPFFLVLFFIASVVLLIDIAGRT-YVVKMSFLDLGTLFMYLIPSSLF 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIG---ISIWQLLNPFVVGSILLGIFTVLVIN 121
IIP ++ L EL++ ++G + + + P + + L+ ++
Sbjct: 63 FIIPITFFAALVLGISRLAYDYELMVCFSLGSKPLDMVRFFLPITLLATLVLFVFSFILL 122
Query: 122 PIATSGEK 129
P+ TS K
Sbjct: 123 PLTTSASK 130
>gi|148927014|ref|ZP_01810690.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni CG8486]
gi|145844422|gb|EDK21531.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni CG8486]
Length = 111
Score = 43.3 bits (101), Expect = 0.066, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 5/113 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLII 63
I +R+ YLK + IDL + + N + L+ + VP
Sbjct: 3 IFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSFSAVPY-- 60
Query: 64 QQIIPFITLVVNIVVFFNLNRTSELVISRAIGISI-WQLLNPFVVGSILLGIF 115
++P + +V ++ R +E V A+G+S + +L PF+ +
Sbjct: 61 --VLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFVVFI 111
>gi|291614865|ref|YP_003525022.1| permease YjgP/YjgQ family protein [Sideroxydans lithotrophicus
ES-1]
gi|291584977|gb|ADE12635.1| permease YjgP/YjgQ family protein [Sideroxydans lithotrophicus
ES-1]
Length = 377
Score = 42.9 bits (100), Expect = 0.068, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 57/146 (39%), Gaps = 2/146 (1%)
Query: 21 LLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI--IQQIIPFITLVVNIVV 78
LL + IL+ ++ ++ +GE + ++ VLA + + ++ + ++
Sbjct: 34 LLVSSILLGIVVFTQLIRLLGESVSGMLAVDGVLAMLGFTSLNYLPVLLSISLFLSVLLT 93
Query: 79 FFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
R SE+V+ GI + + + P + +I + + L+ ++ + ++
Sbjct: 94 LSRSYRDSEMVVWFTSGIGLTRWIRPVLGYAIPVTLLIALLSLVLSPWALSKADEFKRRL 153
Query: 139 KDNGDKQKSDIIPWMQISNPQQDIFI 164
D + + + + F+
Sbjct: 154 DSRDDVSAATPGVFRESKQADRVFFL 179
>gi|213857515|ref|ZP_03384486.1| putative permease [Salmonella enterica subsp. enterica serovar
Typhi str. M223]
Length = 121
Score = 42.9 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 33/86 (38%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLN 103
+ + L VP + Q I+P + ++ L SE+ + A G+S L+
Sbjct: 34 GDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVK 93
Query: 104 PFVVGSILLGIFTVLVINPIATSGEK 129
+V ++ GI + + K
Sbjct: 94 AAMVLALFTGILAAVNVMWAGPWSSK 119
>gi|257462586|ref|ZP_05626996.1| hypothetical protein FuD12_01959 [Fusobacterium sp. D12]
Length = 93
Score = 42.9 bits (100), Expect = 0.081, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 3 GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
I+ Y K + + + +F++D+ + + S+ A + + VP I
Sbjct: 4 KIINSYILKE-SRGPIVLSVSIFTFIFLLDIIVTMMESIIVKGISVFDVARILSFYVPPI 62
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRA 93
+ Q +P V ++ F R+SE + +
Sbjct: 63 LTQTLPLGLFVGIMITFSKFTRSSEAIAMNS 93
>gi|260221417|emb|CBA29959.1| hypothetical protein Csp_A14760 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 367
Score = 42.9 bits (100), Expect = 0.084, Method: Composition-based stats.
Identities = 41/329 (12%), Positives = 99/329 (30%), Gaps = 40/329 (12%)
Query: 41 GELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQ 100
++ + ++ V + I+ + + V + R SE+VI G +
Sbjct: 38 ASRGTFNPADVLIIMGYTVLSDMPTILSMSLFISVLSVVTRMYRDSEMVIWFGSGRGLLG 97
Query: 101 LLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ 160
L+ P + + + + + + I DL ++ GD + + + +
Sbjct: 98 LVRPLMRFAWPVLVVILALAFLILPWSFSKIEDLRDKYDKRGDIARIEPGQF--QESGNG 155
Query: 161 DIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY----NDKVKLKKVVEYQY 216
D +K ++ + A + + + L+ +
Sbjct: 156 DRVFFIEKDSKGQQTGKNV--FIATHEGNKETITSARSGTVEVMNGDKFLVLQNGQRLER 213
Query: 217 GRIPIDKNSTTLN-------IPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR 269
D +T S + + + S
Sbjct: 214 SSGKNDMTLSTFERYGARVGADDNSARDYAPSNAKTTLELVQTPSALHMGELSWRAG--- 270
Query: 270 AETQFYFLIVIPLMLVAMTL--IAASVSLEFSRSNQPRIIVAYGIFSGFMLYT-IITIMK 326
L L A L I + + R+ + ++ F F++Y ++ + K
Sbjct: 271 ------------LALAAFNLIWIGLAAAGANPRAGRSTNLIFA--FLAFVVYFNLLVLGK 316
Query: 327 SFGKSGILLPVAAALIPVILTISLSILIL 355
++ ++G A LIP++L + + +L
Sbjct: 317 NWVENGK-----AELIPMLLQLHGGVFLL 340
>gi|262277384|ref|ZP_06055177.1| putative permease, YjgP/YjgQ family [alpha proteobacterium HIMB114]
gi|262224487|gb|EEY74946.1| putative permease, YjgP/YjgQ family [alpha proteobacterium HIMB114]
Length = 360
Score = 42.5 bits (99), Expect = 0.10, Method: Composition-based stats.
Identities = 41/293 (13%), Positives = 94/293 (32%), Gaps = 24/293 (8%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
++RYFF + K + L +L++ + + + N IS A P I+
Sbjct: 6 VYRYFFIEFFKLFILINLSLSLLIWFTQAARLLELVTDYGN-PISVYAKYLLLIYPKILD 64
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGIS---IWQLLNPFVVGSILLGIFTVLVIN 121
++ ++ +EL I GIS I QL + S+++ + + I
Sbjct: 65 NTFLLSFIISLFFLYSKFETDNELQIYWLSGISKFKIHQLCIYIGIVSLIINLSFSIFIA 124
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ------ISNPQQDIFIGAKKILPENHI 175
P ++ ++ + + N ++ + ++ N +Q G I
Sbjct: 125 PWSSYQGRMILGNSKFTLINAVVKEKNFNSPLKGLTVYVEKNNKQGNIEGIFIYEKTRTI 184
Query: 176 WEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD 235
+ + D+ + + KV ++ D + +
Sbjct: 185 TAEKGEVLSDENGSYLKLINGTTQEKTG-----SKVNFLKFQNTIFDFSKYQIKNTTAPK 239
Query: 236 GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT 288
++ + Y +I + S + I+ P M++ +T
Sbjct: 240 YSER--------NLYWLINNLDNKKISKAR-KIELREEINSRIIKPFMILILT 283
>gi|153875332|ref|ZP_02003181.1| permease YjgP/YjgQ [Beggiatoa sp. PS]
gi|152068203|gb|EDN66818.1| permease YjgP/YjgQ [Beggiatoa sp. PS]
Length = 218
Score = 42.5 bits (99), Expect = 0.10, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 270 AETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFG 329
+ + + + +PL ++ + +A +S R Q + +GI + ++ + K +
Sbjct: 100 LQAELQWRLSLPLTVILLAALAVPLSHTTPRQGQYAK-ILFGILIYLIYNNLLNVAKKWV 158
Query: 330 KSGILLPVAAAL 341
+ G + P
Sbjct: 159 ERGDVPPWIGVW 170
>gi|51474040|ref|YP_067797.1| hypothetical protein RT0862 [Rickettsia typhi str. Wilmington]
gi|51460352|gb|AAU04315.1| conserved hypothetical protein (possible transmembrane protein)
[Rickettsia typhi str. Wilmington]
Length = 360
Score = 42.5 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 61/366 (16%), Positives = 145/366 (39%), Gaps = 20/366 (5%)
Query: 4 ILWR-YFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLI 62
+L+R YF K L + +V++ + ++ + + L +P++
Sbjct: 2 LLYRKYFIKNILPLLIIVTFSVTSIVWITQILKLLYLFDK--GIKVIDFFNLVVLVLPIL 59
Query: 63 IQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINP 122
+ ++P IT++ + ++ NL +L+I +A G++ QL P + ++ + +F + +
Sbjct: 60 LFILLPVITVISVLYIYNNLKVERQLIILQASGVNNIQLALPALYVALTVMLFAYYISST 119
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I + K+N S +I + ++I + K L +I
Sbjct: 120 ILPLSHINLKSRLSFIKNN---YISSMIEEKTFNKITKNITVFIDKKLA-GNIMNGIIIF 175
Query: 183 TIDKKNKIIHRKDADLAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMD--- 235
+K A + N +L K + +Y T ++ IK+
Sbjct: 176 DNRNADKP-SIVFAGSGTLNIHGNNPIFELNKGLRQEYDVNGNLTQLTFDSLMIKLQNDS 234
Query: 236 --GFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAAS 293
Q+ + +Y I + ++ S+ I + + + I+ PL + +A +
Sbjct: 235 SLASQRTQHNKEANEYY-ISELLTPSHDLVITKKIKLIAEAHQRIIWPLYNFVLPCLALA 293
Query: 294 VSLEFSRSNQPRII-VAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSI 352
V L + S + I V + + ++ I I+++F L + A +++ +++ +
Sbjct: 294 VFLRYPYSKKTTFIPVLFSALTVLLVTAIHFILQNFASKN-LDFIFACYFNLLVALTIGL 352
Query: 353 LILLQK 358
+L++K
Sbjct: 353 YLLVRK 358
>gi|317401899|gb|EFV82506.1| permease [Achromobacter xylosoxidans C54]
Length = 385
Score = 42.5 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 25/196 (12%), Positives = 62/196 (31%), Gaps = 3/196 (1%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
+ + + +++V++ L N VLAA + I+ +
Sbjct: 31 ITSHAGVVFSTLLIVWLSVLLVRLLGEAAGGNIGADVVLVLAALSTITALPTILAVSVFI 90
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
+ R SE+V+ A G+S+ L P + ++ + I + A + +
Sbjct: 91 AVLTTVTRNYRESEMVVWFASGLSLADWLKPVLRVAVPVAIAVAGLTLVAAPWAYRQIGE 150
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKN-KIIH 192
++++ D K + + + A+ + + + ++
Sbjct: 151 YHERFEQRSDLSKVTAGQFA--ESAGGNRVFFAEDPAKPTDELGNVFARETGPEWLSVLT 208
Query: 193 RKDADLAIIYNDKVKL 208
A + N L
Sbjct: 209 ASSAHSETLPNGDRFL 224
>gi|325917726|ref|ZP_08179914.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
gi|325536055|gb|EGD07863.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
Length = 360
Score = 42.1 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 25/212 (11%), Positives = 72/212 (33%), Gaps = 11/212 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + ++ L L+ +++ L +I + + + +
Sbjct: 4 LDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIAD-GRIPARLLLSQVGLQFVAYLP 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I+P ++ ++ L R SE+ + AIG+ ++L P ++ + + I L +
Sbjct: 63 IILPLALMLGLLLALARLYRDSEMAVITAIGVGPKRMLRPMLMLVVPVVIIIGLCSLWLG 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ +++ + + + +S + I + +
Sbjct: 123 PWASRTAETMLEDANRSVLMAGLESGKFTPLSGGG---VVYLTTISADGKNLGKV-FMQR 178
Query: 185 DKKNKIIHRKDADLAII-----YNDKVKLKKV 211
K +++ A+ + + ++L+
Sbjct: 179 QKDDRL-DVVTAERGAMFFEGKTDRYLRLEDG 209
>gi|237653449|ref|YP_002889763.1| permease YjgP/YjgQ family protein [Thauera sp. MZ1T]
gi|237624696|gb|ACR01386.1| permease YjgP/YjgQ family protein [Thauera sp. MZ1T]
Length = 360
Score = 42.1 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 21/197 (10%), Positives = 71/197 (36%), Gaps = 9/197 (4%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGEL---PNYSISRGAVLAATRVP 60
I R + + +T + ++ L + Q P+ ++ A ++P
Sbjct: 2 IFRRALQREFAQTAAAVFVALFAILISTVLIRLLGQAAGGRVPPDAVVALIGFGALAQLP 61
Query: 61 LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
++ + + +V R SE+V+ A G+ + + P ++ ++ + +
Sbjct: 62 TVLTLTL----FIAILVSLSRSYRDSEMVVWFASGVPLTAWIRPVLMFALPVVLVAGGGS 117
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ ++ + ++ ++ D + + + ++ Q+ F+ E+ +
Sbjct: 118 LYLTPWSQQKSAEYRERLENRDDTHRVAPGVFRESASAQRVFFVEVGA--GEDGRVRNVF 175
Query: 181 SITIDKKNKIIHRKDAD 197
+ +++ A+
Sbjct: 176 VSEQTRSGQLVVIASAE 192
>gi|331001132|ref|ZP_08324763.1| permease, YjgP/YjgQ family [Parasutterella excrementihominis YIT
11859]
gi|329569437|gb|EGG51215.1| permease, YjgP/YjgQ family [Parasutterella excrementihominis YIT
11859]
Length = 384
Score = 42.1 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 17/173 (9%), Positives = 54/173 (31%), Gaps = 7/173 (4%)
Query: 18 LYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIV 77
L ++ + ++ + + A + +P +I + +
Sbjct: 19 FTVLFSIVVTIGLVRILNQTAGGRYDTGSILEVVAYTSLINLPALIS----LALFLAVFM 74
Query: 78 VFFNLNRTSELVI-SRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQ 136
R SE+ + A G+S+ + P + ++ + + ++
Sbjct: 75 TLNRYWRDSEMFVWFSAGGLSLTSWIRPVLRFALPVVLVVAACSIAVSPWSRAQVQAYRD 134
Query: 137 QWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK 189
++ D K +++ + +Q F+ + + E + + + K
Sbjct: 135 RFAQKEDISKLSSGRFIEAKSGRQVFFL--EGVDQEKGKVKTLLMVELKKDGS 185
>gi|330443790|ref|YP_004376776.1| YjgP/YjgQ family protein [Chlamydophila pecorum E58]
gi|328806900|gb|AEB41073.1| YjgP/YjgQ family protein [Chlamydophila pecorum E58]
Length = 384
Score = 42.1 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 49/350 (14%), Positives = 114/350 (32%), Gaps = 23/350 (6%)
Query: 4 ILWRYFFKYYLKTTLYFLLGAMILVFVI--DLNEIQNQMGELPNYSISRGAVLAATRVPL 61
I RY + + + L A I + L+ I+ + S + +L +
Sbjct: 20 IWKRYLLTKFWLSFIALLFLAFIFYTSVHHSLHAIKGNASFFISLSSLKLLLLYYLSQTV 79
Query: 62 IIQQII-PFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
+ + P + + + F++ E+++ +A G+S+ L+ P + ++ +
Sbjct: 80 LKADFLFPQLIAIAATLTLFSMQSKREVLLLQASGLSLKSLITPLIASGGIVTLILYANF 139
Query: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180
+ EK I K+ ++ D +P + + + + I ++ +
Sbjct: 140 QWLYPICEKTSITKEHSEKE-IPRKHEDKVPALYLKD---QSVLLYSSIDQKSLTLNNIF 195
Query: 181 SITIDKKNKIIHRKD-----ADLAIIYNDKVKLKKV--VEYQYGRIPIDKNSTTLNIPIK 233
I K K+I+ + I + + + E K +
Sbjct: 196 WI---KSPKMIYHVEKLIFSTPSLPIGFNVTEFSDIPTGELTLSGFFDMKEFPEIEFGSY 252
Query: 234 MDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHN------YRAETQFYFLIVIPLMLVAM 287
+ F K E + +S +QFY++++ PL +
Sbjct: 253 ENPFSKIFSAGGKNRLSEFYLAIPWSAFGIGLSTKVPQRILLLLSQFYYMLISPLACITA 312
Query: 288 TLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPV 337
+I A + L FSR+ + + + + + S +L
Sbjct: 313 IVIPAYLCLRFSRTPKATLAYLIPLGVTNTFFVFLKAGVVLANSSVLPTF 362
>gi|254468135|ref|ZP_05081541.1| permease YjgP/YjgQ [beta proteobacterium KB13]
gi|207086945|gb|EDZ64228.1| permease YjgP/YjgQ [beta proteobacterium KB13]
Length = 368
Score = 41.8 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 36/283 (12%), Positives = 102/283 (36%), Gaps = 21/283 (7%)
Query: 81 NLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKD 140
R SE++I + G+ + + P + S+ + + + ++ + + K+
Sbjct: 78 RWFRDSEMMIWFSSGLGLTSFIRPILFFSLPIILLIGFLSLYLSPWATQKSEEYKAGLKN 137
Query: 141 NGDKQKSDIIPWMQISNPQQDIFI--------GAKKILPENHIWEDFTSITIDKKNKIIH 192
+ + + + + ++ K + ++ I ++ +++
Sbjct: 138 RDELATISPGSFKESKSKDRVFYVEGFGDLGSKVKNVFVQSEQNGKLGIIVSNEGSRVST 197
Query: 193 RKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEI 252
D ++ + LKK Y+ +N+ I GF + ++
Sbjct: 198 STD------KDEYIVLKKGKRYEVNH----ENNNFTEIKFNDYGFLVERKLPPIIDVNQV 247
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGI 312
+ + + R +F + + +PL + + ++A +S RS + I+ +
Sbjct: 248 EAMPTALLL--LTNTNREIAEFVWRVSLPLSGIVLIILAIPLSFINPRSGRSANIIIAIM 305
Query: 313 FSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
+ ++ + +S+ G L P I +L IS++ ++
Sbjct: 306 IFA-IYNNLMGVTQSYINLGKLNPYVGGAIVHVLIISIASYLM 347
>gi|237747610|ref|ZP_04578090.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
gi|229378972|gb|EEO29063.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
Length = 357
Score = 41.8 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 23/179 (12%), Positives = 63/179 (35%), Gaps = 13/179 (7%)
Query: 19 YFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVV 78
L I + +I + + + ++ + +P+I+ L + V
Sbjct: 1 MTLFTITITMMLIRILGQAAKGRVASDDVLALLGFTSLNYLPIIL-------ILTGFVSV 53
Query: 79 FFNLNRT---SELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
+ R+ SE+V+ A G+S+ + L P + +I + + L+ + +
Sbjct: 54 LLVVTRSYQDSEMVVWFASGLSLTRWLRPVIEFAIPIVVLVSLLGFFATPWAYRQSAEFR 113
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRK 194
++++ + + I P + +K+ + + ++ I + I
Sbjct: 114 ERFEKR--EDIARISPGKFQESAAAQRVFFVEKMSDDLNKVKNV-FINSTRNGNITTVV 169
>gi|303281925|ref|XP_003060254.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457725|gb|EEH55023.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1007
Score = 41.4 bits (96), Expect = 0.25, Method: Composition-based stats.
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 3/84 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L R ++ + G +I + L +I + L R +AA ++ I
Sbjct: 215 LTRGLERFAFLSVAMACFGFIIYHSLFALVDITRRADGLSVADAGRVKCIAALKM---IA 271
Query: 65 QIIPFITLVVNIVVFFNLNRTSEL 88
+ + R E+
Sbjct: 272 WTVYPAVYFAVLFGVMTPARQHEI 295
>gi|163784080|ref|ZP_02179031.1| hypothetical protein HG1285_04101 [Hydrogenivirga sp. 128-5-R1-1]
gi|159880656|gb|EDP74209.1| hypothetical protein HG1285_04101 [Hydrogenivirga sp. 128-5-R1-1]
Length = 295
Score = 41.4 bits (96), Expect = 0.25, Method: Composition-based stats.
Identities = 49/304 (16%), Positives = 104/304 (34%), Gaps = 30/304 (9%)
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
++ +V+ L + ++ GISI L+ P V+ SI + + + +
Sbjct: 1 MAAVISFFIVYRELITSRKIYPIFLNGISIKYLITPAVLFSIFVFFIQLFNNLVVMPKSK 60
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI---D 185
++ + + K + + D ++ + D F A + + I I +
Sbjct: 61 ELSLKYYKTLKGGKLQSEEDKYIFISNQWIKLDNFTFAYFGFLDLNKSIGKNFIYIKLDN 120
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVV------EYQYGRIPIDKNSTTLNIPIK-MDGFQ 238
K+ + R +A I +K+KL K + +K + I K +
Sbjct: 121 KEFYPLFRVEAKTVNIQKEKLKLFKGRIVSLADVINFDYTKFEKLEYPVKIDTKNLRKLI 180
Query: 239 KFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMT-----LIAAS 293
K + FYE + + R ++ + P++L L
Sbjct: 181 KIKRPTSILQFYEKAIIADRFGYPSGYFWSRF-FSYFTTVFSPIVLTIFIYPWIWL---- 235
Query: 294 VSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSIL 353
R + I++ I F Y I + S ++G + + I I+ + L +
Sbjct: 236 ------RRREKYIVIFGSIL--FYWYVISALA-SLSETGGVPYFSPVFI-NIIYLILGFI 285
Query: 354 ILLQ 357
+L +
Sbjct: 286 LLFK 289
>gi|303258296|ref|ZP_07344303.1| permease YjgP/YjgQ [Burkholderiales bacterium 1_1_47]
gi|302859049|gb|EFL82133.1| permease YjgP/YjgQ [Burkholderiales bacterium 1_1_47]
Length = 364
Score = 41.0 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 26/256 (10%), Positives = 78/256 (30%), Gaps = 17/256 (6%)
Query: 20 FLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVF 79
L ++ + ++ + + A + +P +I + +
Sbjct: 1 MLFSIVVTIGLVRILNQTAGGRYDTGSILEVVAYTSLINLPALIS----LALFLAVFMTL 56
Query: 80 FNLNRTSELVI-SRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQW 138
R SE+ + A G+S+ + P + ++ + + ++ ++
Sbjct: 57 NRYWRDSEMFVWFSAGGLSLTSWIRPVLRFALPVVLVVAACSIAVSPWSRAQVQAYRDRF 116
Query: 139 KDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNK----IIHRK 194
D K +++ + +Q F+ + + E + + + K + R
Sbjct: 117 AQKEDISKLSSGRFIEAKSGRQVFFL--EGVDQEKGKVKTLLMVELKKDGSRSVLVSDRG 174
Query: 195 DADLAIIYNDKVKLKKVVEYQ-----YGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSF 249
+ + + L +Y G D + + +++ +
Sbjct: 175 HIENKPNGDRYIVLDDGRKYDTKPSGLGASVSDFREYEIRMDSSPSEVG-ANKKLNAMPI 233
Query: 250 YEIIKKMSFSNKSNIF 265
++IK+ S +F
Sbjct: 234 EDLIKRTDNRAASELF 249
>gi|297182303|gb|ADI18471.1| hypothetical protein [uncultured Verrucomicrobiales bacterium
HF4000_13K17]
Length = 432
Score = 41.0 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 58 RVPLIIQQIIPFI-----TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILL 112
+ + +++P + L+ + + R+ E+ + RA+G ++ F+ +I++
Sbjct: 297 NLAGVFGKLLPLVILVCGVLIAALAMLNTRARSQEIGVLRALGQGGERIALLFLGRAIII 356
Query: 113 GIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQIS 156
G+ A +G IG L Q+ + + + + W +
Sbjct: 357 GVLG-------ALAGFAIGNGLAIQFGRDLFQLTASQLAWENQN 393
>gi|332877577|ref|ZP_08445321.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332684426|gb|EGJ57279.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 150
Score = 40.6 bits (94), Expect = 0.34, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 2/124 (1%)
Query: 233 KMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAA 292
K+D +++ +E+ K + + Y +TLI
Sbjct: 23 KIDDLMPMEYTAENKNLFELDKFIERERMKGSPNLNMYLLVKYRRWGAISTAFILTLIGV 82
Query: 293 SVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK-SGILLPVAAALIPVILTISLS 351
+VS R I + G+ GF + + + SG L P+ A LIP ++ ++L+
Sbjct: 83 AVSSVKKR-GGMGINLMVGVVVGFTFVFFDRVFGTLAQTSGGLSPLMAVLIPNLIFLTLA 141
Query: 352 ILIL 355
IL+L
Sbjct: 142 ILLL 145
>gi|254373307|ref|ZP_04988795.1| predicted protein [Francisella tularensis subsp. novicida
GA99-3549]
gi|151571033|gb|EDN36687.1| predicted protein [Francisella novicida GA99-3549]
Length = 557
Score = 40.6 bits (94), Expect = 0.34, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L K YL TT FLL + ++ ++ + + ++ +++S ++
Sbjct: 445 MFVVLT--LLKLYLFTTCLFLLSIFFIGYLSSFDKHSSVLNKIVYFTLSIMMGYVILKLS 502
Query: 61 LIIQQIIPFITLVVN 75
+ I QI+ +ITL
Sbjct: 503 IFIYQILNYITLKST 517
>gi|293604027|ref|ZP_06686440.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
gi|292817631|gb|EFF76699.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
Length = 369
Score = 40.6 bits (94), Expect = 0.34, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 53/150 (35%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLV 73
+ + + +++V++ L N VLAA + I+ +
Sbjct: 12 ITSHAGVVFSTLLIVWLSVLLVRLLGEAAGGNIGADVVLVLAALSTITALPTILAVSIFI 71
Query: 74 VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGID 133
+ R SE+V+ A G+S+ L P + ++ + + + A + +
Sbjct: 72 AVLTTVTRNYRESEMVVWFASGLSLADWLKPVLRVAVPVALAVAGLTLVAAPWAYRQIGE 131
Query: 134 LIQQWKDNGDKQKSDIIPWMQISNPQQDIF 163
++++ D K + + S + F
Sbjct: 132 YHERFEQRSDLSKVTAGQFAESSGGSRVFF 161
>gi|213855151|ref|ZP_03383391.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 206
Score = 40.6 bits (94), Expect = 0.35, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM 325
N RA + ++ I + + M L+ +S+ R + + + + + + I T +
Sbjct: 98 DNDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSI 156
Query: 326 KSFGKSGILLPVAAALIPVILTISLSILI 354
KS G G L PV ++ ++L+I +
Sbjct: 157 KSNGGKGKLDPVIWMWAVNLIYLALAIGL 185
>gi|213162832|ref|ZP_03348542.1| putative inner membrane protein [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 219
Score = 40.6 bits (94), Expect = 0.36, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIM 325
N RA + ++ I + + M L+ +S+ R + + + + + + I T +
Sbjct: 111 DNDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGRV-LSMLPAMLLYLLFFLIQTSI 169
Query: 326 KSFGKSGILLPVAAALIPVILTISLSILI 354
KS G G L PV ++ ++L+I +
Sbjct: 170 KSNGGKGKLDPVIWMWAVNLIYLALAIGL 198
>gi|71901308|ref|ZP_00683405.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
gi|71728928|gb|EAO31062.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
Length = 408
Score = 40.6 bits (94), Expect = 0.42, Method: Composition-based stats.
Identities = 23/198 (11%), Positives = 68/198 (34%), Gaps = 6/198 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + ++ + L+ M++ L +I + + ++ R +
Sbjct: 51 LDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIAD-GHFPAKLLLSQLGLRFISYLP 109
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P ++ ++ L R SE+ + +IG+ ++L + ++ + + + +A
Sbjct: 110 LLLPLALMLGLLLSLGRLYRDSEMAVITSIGVGPGRMLPSILGLALPVVVLIGVCSLWLA 169
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ DL++Q + + + + + + + + +
Sbjct: 170 PWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGG---VVYLSSLSSDGTKLNAVFMQSQ 226
Query: 185 DKKNKIIHRKDADLAIIY 202
I A +Y
Sbjct: 227 KDDR--IAVVTAKRGEMY 242
>gi|217322882|ref|YP_002327178.1| hypothetical protein ABBFA_003302 [Acinetobacter baumannii
AB307-0294]
gi|213986547|gb|ACJ56846.1| hypothetical protein ABBFA_003302 [Acinetobacter baumannii
AB307-0294]
Length = 294
Score = 40.2 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 14/239 (5%)
Query: 76 IVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLI 135
++VF L E+ + G+S QL + +++ + +++ + G + L
Sbjct: 1 MLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWMTPWGLREFEKLT 60
Query: 136 QQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI-DKKNKIIHRK 194
+ I A + + +D K+ K
Sbjct: 61 TTQAVRTGFDLVR----PREFISSGPYTIYAGSLSEDRKNLKDIFFYQRAAKEGKPDVMI 116
Query: 195 DADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIK 254
A A VV+ GR + ++ E F
Sbjct: 117 LAKEATRVEVANDTANVVDLVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKDVKFES--G 174
Query: 255 KMSFSNKSNIFHN-----YRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+ + S +F R+E + + P ++ +++ ++S R + ++
Sbjct: 175 DVEALSTSKLFSKANDPVVRSELGW--RLFGPFTIIIALMLSVALSEVSPRQGRYYRLI 231
>gi|148244590|ref|YP_001219284.1| hypothetical protein COSY_0441 [Candidatus Vesicomyosocius okutanii
HA]
gi|146326417|dbj|BAF61560.1| hypothetical protein [Candidatus Vesicomyosocius okutanii HA]
Length = 357
Score = 40.2 bits (93), Expect = 0.47, Method: Composition-based stats.
Identities = 51/323 (15%), Positives = 106/323 (32%), Gaps = 31/323 (9%)
Query: 14 LKTTLYFLLGAMILVFVIDLNEIQN---QMGELPNYSISRGAVLAATRVPLIIQQIIPFI 70
++ TL L I++ ++ + + L + I I+
Sbjct: 1 MRNTLVILSAVFIVISLVVFGNQLVVVVKESLEEGIPVKDLLPLVGFNMIRDIVPILSLS 60
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGI---SIWQLLNPFVVGSILLGIFTVLVINPIATSG 127
L+ I+ L + SE VI ++G+ + P V+ +++ + V+ P +
Sbjct: 61 LLLAIILSINKLYKNSEAVIMNSLGLNNKHFMVFIQPLVIVIVIVIVILTTVVVPWSKQQ 120
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKI----LPENHIWEDFTSIT 183
+ + I+ + ++ + DI A K+ + E T
Sbjct: 121 KDLIINHSKNISKFSFIKEREF-----QEFKNGDIIFFASKVSNFNNSKEQNMEGIFIYT 175
Query: 184 IDKKNKIIHRKDADLAIIYND------KVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGF 237
+I A A Y + ++LK Y + K + +
Sbjct: 176 FINNEPVI--ILAKQAKKYTNLNTNSVYLRLKNGTNYHGFILDTKKK----ILNFNLYDI 229
Query: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAET-QFYFLIVIPLMLVAMTLIAASVSL 296
Q ++IK S S F E +F + I PL ++ ++ + +
Sbjct: 230 QIIDGNMKKL-ISKVIKVESKSTFELFFSRKLTEIAEFQWRISQPLSILILSALGVLLG- 287
Query: 297 EFSRSNQPRIIVAYGIFSGFMLY 319
S++ + V G+ F+LY
Sbjct: 288 RTSQNGGRNLGVLIGVVV-FILY 309
>gi|161505453|ref|YP_001572565.1| hypothetical protein SARI_03611 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160866800|gb|ABX23423.1| hypothetical protein SARI_03611 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 59
Score = 39.8 bits (92), Expect = 0.60, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 44 PNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGIS 97
+ + L VP + Q I+P ++ L SE+++ A G+S
Sbjct: 6 GDIPANLVLSLLELGVPEMAQLILPLSLFPGLLMTLGKLYTESEIMVMHACGLS 59
>gi|152988471|ref|YP_001348603.1| hypothetical protein PSPA7_3243 [Pseudomonas aeruginosa PA7]
gi|150963629|gb|ABR85654.1| hypothetical protein PSPA7_3243 [Pseudomonas aeruginosa PA7]
Length = 624
Score = 39.8 bits (92), Expect = 0.66, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 179 FTSITID----KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
++ + +++ R D A D + ++K Q G P+ + + ++
Sbjct: 53 VSTYSFTILKPSGREMLSRIDRSYA--ETDSLIVEKAELTQPGEKPVPLDQSQIDTRTAP 110
Query: 235 DGFQKF-SEQFASRSFYEII--KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+ Q F E+ S +F + ++S++ + F TQF++++ P M V
Sbjct: 111 NPDQGFLRERQTSLAFPNLRVGTRISYTLR-EHFTAKPLSTQFHYVLSRPPMPV 163
>gi|160903351|ref|YP_001568932.1| binding-protein-dependent transport systems inner membrane
component [Petrotoga mobilis SJ95]
gi|160360995|gb|ABX32609.1| binding-protein-dependent transport systems inner membrane
component [Petrotoga mobilis SJ95]
Length = 277
Score = 39.8 bits (92), Expect = 0.69, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
Query: 226 TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
L + + K E+ + + +++ K+SF F + F + IP L+
Sbjct: 25 YVLPFYVTLSTSFKPFEEVSISNMWKLPTKISFEGFKEAFAKLGPNLKNSFYLTIPATLI 84
Query: 286 AMTLIAA--SVSLEFSRS---NQPRIIVAYGIFSGF--MLYTIITIMKSFGKSGILLPVA 338
+ +I + +L R N ++ +G+F + +L+ +I + G G + +
Sbjct: 85 S-AMIGSINGFALSKLRFKYSNIIFALILFGMFIPYQSVLFPLIQFFQLIGLYGTIPALI 143
>gi|297526499|ref|YP_003668523.1| hypothetical protein Shell_0493 [Staphylothermus hellenicus DSM
12710]
gi|297255415|gb|ADI31624.1| hypothetical protein Shell_0493 [Staphylothermus hellenicus DSM
12710]
Length = 705
Score = 39.5 bits (91), Expect = 0.75, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 309 AYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLSILILLQ 357
I G +L + G G++ +AA LI +++ + I+L
Sbjct: 56 LTSIIVGIILLVFSIFLLILGGVGVID-LAAGLIGIVVLACIGAFIILY 103
>gi|258573109|ref|XP_002540736.1| predicted protein [Uncinocarpus reesii 1704]
gi|237901002|gb|EEP75403.1| predicted protein [Uncinocarpus reesii 1704]
Length = 335
Score = 39.5 bits (91), Expect = 0.79, Method: Composition-based stats.
Identities = 19/140 (13%), Positives = 42/140 (30%), Gaps = 2/140 (1%)
Query: 123 IATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSI 182
I I + + +K + W++ I A P+
Sbjct: 37 ICARSPVIAAAVDRGFKVRTLRSGKISFLWLRQEKESGTGVIRADSFSPKTVRSMIVFMY 96
Query: 183 TIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSE 242
T + R DAD A K++L ++ + + P+D P +
Sbjct: 97 TQKYDGIELGR-DAD-AEQVLSKLELLQIDDASGEKAPVDSQGLAKPTPNTFEPLMDHIH 154
Query: 243 QFASRSFYEIIKKMSFSNKS 262
+ ++++ +N+
Sbjct: 155 VNSIADYFDLPGLRDLANQK 174
>gi|300857999|ref|YP_003782982.1| cell division protein [Corynebacterium pseudotuberculosis FRC41]
gi|300685453|gb|ADK28375.1| Cell division protein [Corynebacterium pseudotuberculosis FRC41]
gi|302205726|gb|ADL10068.1| Putative cell division protein FtsX [Corynebacterium
pseudotuberculosis C231]
gi|302330280|gb|ADL20474.1| Putative cell division protein - FtsX [Corynebacterium
pseudotuberculosis 1002]
gi|308275963|gb|ADO25862.1| Putative cell division protein - FtsX [Corynebacterium
pseudotuberculosis I19]
Length = 300
Score = 39.5 bits (91), Expect = 0.88, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Query: 30 VIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELV 89
++D + + + + + AA Q + + L+VN+V NR E+
Sbjct: 155 IVDQVDDLRGATDNLDAIRNATFIFAAI-------QAVAAVFLIVNMVQIAAFNRREEIS 207
Query: 90 ISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIG---IDLIQQWKDNGDKQK 146
I R +G S W PFV+ ++ + F V++ +A G K L + +
Sbjct: 208 IMRMVGASRWYTQAPFVLEAV-IAAFFGAVLSGVALFGGKEWVVDKTLKGLYDSQLIARV 266
Query: 147 SDIIPW 152
+ W
Sbjct: 267 GNSDIW 272
>gi|257457657|ref|ZP_05622824.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
gi|257445043|gb|EEV20119.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
Length = 116
Score = 39.5 bits (91), Expect = 0.89, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 10/116 (8%)
Query: 244 FASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQ 303
+S Y+ IK+ ++ N +F+ IP L+A ++S + +
Sbjct: 1 MSSFDLYKDIKEKQTQDEDKRILNL-YWMEFHKKFSIPFGAFFFVLLAFAIS-SAGKVHN 58
Query: 304 PRIIVAYGIFSGFMLYTI----ITIMKSFGKSGILLPVAAALIPVILTISLSILIL 355
G+ + + T+ +G +A +P I+ + S+++L
Sbjct: 59 QGAGFFLGLLIAVAYWALFMGGQTLCLRLNWNGT----SAMWVPNIMVFAASVVLL 110
>gi|319941842|ref|ZP_08016164.1| hypothetical protein HMPREF9464_01383 [Sutterella wadsworthensis
3_1_45B]
gi|319804775|gb|EFW01642.1| hypothetical protein HMPREF9464_01383 [Sutterella wadsworthensis
3_1_45B]
Length = 379
Score = 39.5 bits (91), Expect = 0.89, Method: Composition-based stats.
Identities = 28/222 (12%), Positives = 62/222 (27%), Gaps = 14/222 (6%)
Query: 9 FFKYYLKTTLYFLLG--AMILVFVIDLNEIQNQMGELPNYSI--SRGAVLAATRVPLIIQ 64
FK L L L G +L ++ + + SI L + +
Sbjct: 2 IFKRSLIAELANLAGAVFTVLFTIVLAVAMVRFLNMAAGGSIEHGTVVQLVLYNALVNLP 61
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVI-SRAIGISIWQLLNPFVVGSILLGIFTVLVINPI 123
++ + ++ + +E+V+ + G SI + P V ++ + + L+ I
Sbjct: 62 PLLAASLFIATLMTLMRSWQDNEMVVWFSSGGRSILSWIEPTVKFALPIVVVIALLSIVI 121
Query: 124 ATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSIT 183
+ L + + + I P I + + +
Sbjct: 122 SPWARAETDRLRNS--VSAREDVNAIAPGRFIEAMGGKRVFFVESAEEGGNQVRNV--FM 177
Query: 184 IDKKNKIIHRKDADLAIIY-----NDKVKLKKVVEYQYGRIP 220
+ A+ I + V L Y+
Sbjct: 178 AEGDWGKESVVTAEKGTIEVNAEGDRYVVLGNGRRYEAQTDS 219
>gi|28198043|ref|NP_778357.1| hypothetical protein PD0107 [Xylella fastidiosa Temecula1]
gi|182680670|ref|YP_001828830.1| permease YjgP/YjgQ family protein [Xylella fastidiosa M23]
gi|28056103|gb|AAO28006.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
gi|182630780|gb|ACB91556.1| permease YjgP/YjgQ family protein [Xylella fastidiosa M23]
gi|307579131|gb|ADN63100.1| permease YjgP/YjgQ family protein [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 361
Score = 39.5 bits (91), Expect = 0.95, Method: Composition-based stats.
Identities = 24/198 (12%), Positives = 71/198 (35%), Gaps = 6/198 (3%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + ++ + L+ M++ L +I + + ++ R +
Sbjct: 4 LDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIAD-GHFPAKLLLSQLGLRFISYLP 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
++P ++ ++ L R SE+ + +IG+ ++L + + + + + +A
Sbjct: 63 LLLPLALMLGLLMSLGRLYRDSEMAVITSIGVGPGRMLPSILGLVLPVVVLIGVCSLWLA 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ DL++Q + + + + + + + + + +
Sbjct: 123 PWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGG---VVYLSSLSSDGTKL-NAVFMQS 178
Query: 185 DKKNKIIHRKDADLAIIY 202
K ++ I A +Y
Sbjct: 179 QKDDR-IAVVTAKRGEMY 195
>gi|254391219|ref|ZP_05006425.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|197704912|gb|EDY50724.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 253
Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 25/189 (13%), Positives = 62/189 (32%), Gaps = 17/189 (8%)
Query: 150 IPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKV--- 206
W + Q D+ A+ + I + T + D + ++ DA ++ + +
Sbjct: 63 GVWEARGSAQADVQREAQALHE---ISQRATVLPRDAREELREDIDAYVSHVVRTEWKHM 119
Query: 207 -KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF 265
+ +++ + + + L P Q + S + N ++
Sbjct: 120 IEQEELTQRGDELLAEIREDIALRTPTNELEAQTYQPMLERVSVVSDARTTRAENAASTL 179
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAY-GIFSGFMLYTIITI 324
F L++ A+ + ++ RS + ++ F+L+ +
Sbjct: 180 PGV---VWFG------LIIGALVTVGLIFTMRMGRSGRELLLAGLFSALIAFLLFMVWDF 230
Query: 325 MKSFGKSGI 333
FG+SG
Sbjct: 231 DAPFGRSGT 239
>gi|320527318|ref|ZP_08028503.1| efflux ABC transporter, permease protein [Solobacterium moorei
F0204]
gi|320132342|gb|EFW24887.1| efflux ABC transporter, permease protein [Solobacterium moorei
F0204]
Length = 1147
Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 61 LIIQQIIP-FITLVVNIVVFFNLNR-----TSELVISRAIGISIWQLLNPFVVGSILLGI 114
I ++ P F LV +V + R +E+ RA+G + WQ + ++ +I I
Sbjct: 616 EAISRVFPVFFILVAALVCLTTMTRLVEEQRNEIGTLRALGYTKWQCTSKYLFYAIFATI 675
Query: 115 FTVLVIN 121
++V +
Sbjct: 676 IGIVVGS 682
>gi|208779638|ref|ZP_03246983.1| hypothetical protein FTG_0890 [Francisella novicida FTG]
gi|208744599|gb|EDZ90898.1| hypothetical protein FTG_0890 [Francisella novicida FTG]
Length = 557
Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L K YL TT FLL + + ++ + + ++ +++S ++
Sbjct: 445 MFVVLT--LLKLYLFTTCLFLLSIFFIGCLSSFDKHSSVLNKIVYFTLSIMMGYVILKLS 502
Query: 61 LIIQQIIPFITLVVN 75
+ I QI+ +ITL
Sbjct: 503 IFIYQILNYITLKST 517
>gi|254374770|ref|ZP_04990251.1| predicted protein [Francisella novicida GA99-3548]
gi|151572489|gb|EDN38143.1| predicted protein [Francisella novicida GA99-3548]
Length = 418
Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L K YL TT FLL + ++ ++ + + ++ +++S ++
Sbjct: 306 MFVVLT--LLKLYLFTTCLFLLSIFFIGYLSSFDKHSSVLNKIVYFTLSIMMGYVILKLS 363
Query: 61 LIIQQIIPFITLVVN 75
+ I QI+ +ITL
Sbjct: 364 IFIYQILNYITLKST 378
>gi|319764477|ref|YP_004128414.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
gi|330826693|ref|YP_004389996.1| diguanylate cyclase/phosphodiesterase [Alicycliphilus denitrificans
K601]
gi|317119038|gb|ADV01527.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
gi|329312065|gb|AEB86480.1| diguanylate cyclase/phosphodiesterase [Alicycliphilus denitrificans
K601]
Length = 986
Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 39/258 (15%), Positives = 86/258 (33%), Gaps = 23/258 (8%)
Query: 16 TTLYFLLGAMILVFVIDLNEIQNQMGELP--NYSISRGAVLAATRVPLIIQQIIPFITLV 73
TL L ++F E ++G P N + A++ V L Q +P I L
Sbjct: 259 ITLALLYVVTFVLFRSLFREELPKVGFQPLLNLTQWSCALMLVLSVALPYAQFLPLIWLF 318
Query: 74 ---VNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
++V+ F L R +V+ ++ W SI + + A G +
Sbjct: 319 TAVGSLVLVFFLVR---IVVITHSTVAAW------YGASIGVTLLASGYEVVAAAFGLQT 369
Query: 131 GI---DLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKK 187
I + + + I M+ + Q+ + A+ L + T+D +
Sbjct: 370 WIGSVNSVTAALSSSLLATMAIAAQMRQEHRQR---VQAQTELEHTYNVIPLGLFTLDPQ 426
Query: 188 NKIIHRKDADLAIIYNDKVK-LKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
I A A + + + ++ + P + +LN + + +
Sbjct: 427 GHFIAANPALQAALGPAVLVPGRDHWDHYFDDTPWQRLLHSLNA--QPVAEFEVRGRTDD 484
Query: 247 RSFYEIIKKMSFSNKSNI 264
+ + + ++++
Sbjct: 485 PQLSQGRRFLVKASRAGG 502
>gi|193214876|ref|YP_001996075.1| acriflavin resistance protein [Chloroherpeton thalassium ATCC
35110]
gi|193088353|gb|ACF13628.1| acriflavin resistance protein [Chloroherpeton thalassium ATCC
35110]
Length = 1050
Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 12/96 (12%)
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI------ 324
F+ + IPL M ++ L + + +I+ GI + I
Sbjct: 352 RMAFWVALAIPLSFAGMAILGTMYGLTINVVSLMGMIIVTGILVDDGIVIAENIYQHYER 411
Query: 325 ------MKSFGKSGILLPVAAALIPVILTISLSILI 354
G +L V AA++ I+ L + +
Sbjct: 412 GEKPIPAAINGTLEVLPSVFAAVLTTIIFFMLFLFL 447
>gi|261884425|ref|ZP_06008464.1| permease YjgP/YjgQ [Campylobacter fetus subsp. venerealis str.
Azul-94]
Length = 164
Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 10/114 (8%)
Query: 186 KKNKIIHRKDADLAIIYNDKVKLKKVVEYQY---------GRIPIDKNSTTLNIPIKMDG 236
+ II + A A ++ KL V G I + + K
Sbjct: 17 QDGDIIGQITAKKAKFEDNSWKLFDVDIISLPPRLELNATGYIENTQKELLILSGFKPRT 76
Query: 237 FQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
+ + ++ S + I + + K+ + + ++ Y LI PL M LI
Sbjct: 77 IENIYQTNSNYSITDAIDSLR-TLKNEGINLNKIKSTLYSLIFFPLFAPLMVLI 129
>gi|50287431|ref|XP_446145.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525452|emb|CAG59069.1| unnamed protein product [Candida glabrata]
Length = 510
Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 12/129 (9%)
Query: 2 PGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATR--- 58
GIL Y + LK+ + L+ +V ++ +N + Y + A
Sbjct: 290 FGILHHYSLREQLKSLWFLLILIFSIVTMLRINYFIATIRSQEEYLLGDIEDAAKLNGIF 349
Query: 59 ---VPLIIQQIIPFI-TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGI 114
+PL IPFI L+ ++ L+ +V + ++ IS+ LL L+GI
Sbjct: 350 DLLLPLGGVVSIPFIGYLLDSLDSLSTLS----IVCAMSLFISMVGLLKSSYWLH-LIGI 404
Query: 115 FTVLVINPI 123
+V P
Sbjct: 405 IVFVVFRPF 413
>gi|194323176|ref|ZP_03056960.1| hypothetical protein FTE_0766 [Francisella tularensis subsp.
novicida FTE]
gi|194322540|gb|EDX20020.1| hypothetical protein FTE_0766 [Francisella tularensis subsp.
novicida FTE]
Length = 242
Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 1 MPGILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVP 60
M +L K YL TT FLL + ++ ++ + + ++ +++S ++
Sbjct: 130 MFVVLT--LLKLYLFTTCLFLLSIFFIGYLSSFDKHSSVLNKIVYFTLSIMMGYVILKLS 187
Query: 61 LIIQQIIPFITLVVN 75
+ I QI+ +ITL
Sbjct: 188 IFIYQILNYITLKST 202
>gi|296389545|ref|ZP_06879020.1| hypothetical protein PaerPAb_15406 [Pseudomonas aeruginosa PAb1]
gi|313111137|ref|ZP_07796962.1| putative cysteine protease [Pseudomonas aeruginosa 39016]
gi|310883464|gb|EFQ42058.1| putative cysteine protease [Pseudomonas aeruginosa 39016]
Length = 624
Score = 38.7 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 179 FTSITID----KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
++ + +++ R D A D + ++K Q G P+ + + ++
Sbjct: 53 VSTYSFTILKPSGREMLSRIDRSYA--ETDSLIVEKAELTQPGGKPVPLDQSQIDTRTAP 110
Query: 235 DGFQKF-SEQFASRSFYEII--KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+ Q F E+ S +F + ++S++ + F TQF++++ P M V
Sbjct: 111 NPDQGFLRERQTSLAFPNLRVGTRISYTLR-EHFTAKPLSTQFHYILSRPPMPV 163
>gi|107101471|ref|ZP_01365389.1| hypothetical protein PaerPA_01002513 [Pseudomonas aeruginosa PACS2]
Length = 624
Score = 38.7 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 179 FTSITID----KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
++ + +++ R D A D + ++K Q G P+ + + ++
Sbjct: 53 VSTYSFTILKPSGREMLSRIDRSYA--ETDSLIVEKAELTQPGGKPVPLDQSQIDTRTAP 110
Query: 235 DGFQKF-SEQFASRSFYEII--KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+ Q F E+ S +F + ++S++ + F TQF++++ P M V
Sbjct: 111 NPDQGFLRERQTSLAFPNLRVGTRISYTLR-EHFTAKPLSTQFHYILSRPPMPV 163
>gi|15597240|ref|NP_250734.1| hypothetical protein PA2044 [Pseudomonas aeruginosa PAO1]
gi|254240478|ref|ZP_04933800.1| hypothetical protein PA2G_01129 [Pseudomonas aeruginosa 2192]
gi|9948051|gb|AAG05432.1|AE004631_1 hypothetical protein PA2044 [Pseudomonas aeruginosa PAO1]
gi|126193856|gb|EAZ57919.1| hypothetical protein PA2G_01129 [Pseudomonas aeruginosa 2192]
Length = 624
Score = 38.7 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 179 FTSITID----KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
++ + +++ R D A D + ++K Q G P+ + + ++
Sbjct: 53 VSTYSFTILKPSGREMLSRIDRSYA--ETDSLIVEKAELTQPGGKPVPLDQSQIDTRTAP 110
Query: 235 DGFQKF-SEQFASRSFYEII--KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+ Q F E+ S +F + ++S++ + F TQF++++ P M V
Sbjct: 111 NPDQGFLRERQTSLAFPNLRVGTRISYTLR-EHFTAKPLSTQFHYILSRPPMPV 163
>gi|218892000|ref|YP_002440867.1| putative cysteine proteases [Pseudomonas aeruginosa LESB58]
gi|218772226|emb|CAW28005.1| putative cysteine proteases [Pseudomonas aeruginosa LESB58]
Length = 624
Score = 38.7 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 179 FTSITID----KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
++ + +++ R D A D + ++K Q G P+ + + ++
Sbjct: 53 VSTYSFTILKPSGREMLSRIDRSYA--ETDSLIVEKAELTQPGGKPVPLDQSQIDTRTAP 110
Query: 235 DGFQKF-SEQFASRSFYEII--KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+ Q F E+ S +F + ++S++ + F TQF++++ P M V
Sbjct: 111 NPDQGFLRERQTSLAFPNLRVGTRISYTLR-EHFTAKPLSTQFHYILSRPPMPV 163
>gi|116049994|ref|YP_791195.1| hypothetical protein PA14_38080 [Pseudomonas aeruginosa UCBPP-PA14]
gi|115585215|gb|ABJ11230.1| putative cysteine proteases [Pseudomonas aeruginosa UCBPP-PA14]
Length = 624
Score = 38.7 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 179 FTSITID----KKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
++ + +++ R D A D + ++K Q G P+ + + ++
Sbjct: 53 VSTYSFTILKPSGREMLSRIDRSYA--ETDSLIVEKAELTQPGGKPVPLDQSQIDTRTAP 110
Query: 235 DGFQKF-SEQFASRSFYEII--KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLV 285
+ Q F E+ S +F + ++S++ + F TQF++++ P M V
Sbjct: 111 NPDQGFLRERQTSLAFPNLRVGTRISYTLR-EHFTAKPLSTQFHYILSRPPMPV 163
>gi|294813622|ref|ZP_06772265.1| Putative integral membrane protein [Streptomyces clavuligerus ATCC
27064]
gi|326441969|ref|ZP_08216703.1| putative integral membrane protein [Streptomyces clavuligerus ATCC
27064]
gi|294326221|gb|EFG07864.1| Putative integral membrane protein [Streptomyces clavuligerus ATCC
27064]
Length = 263
Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 25/189 (13%), Positives = 63/189 (33%), Gaps = 17/189 (8%)
Query: 150 IPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKV--- 206
W + Q D+ A+ + I + T + D + ++ DA ++ + +
Sbjct: 73 GVWEARGSAQADVQREAQALHE---ISQRATVLPRDAREELREDIDAYVSHVVRTEWKHM 129
Query: 207 -KLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIF 265
+ +++ + + + L P Q + S + N ++
Sbjct: 130 IEQEELTQRGDELLAEIREDIALRTPTNELEAQTYQPMLERVSVVSDARTTRAENAASTL 189
Query: 266 HNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV-AYGIFSGFMLYTIITI 324
F L++ A+ + ++ RS + ++ + F+L+ +
Sbjct: 190 PGV---VWFG------LIIGALVTVGLIFTMRMGRSGRELLLAGLFSALIAFLLFMVWDF 240
Query: 325 MKSFGKSGI 333
FG+SG
Sbjct: 241 DAPFGRSGT 249
>gi|154486914|ref|ZP_02028321.1| hypothetical protein BIFADO_00747 [Bifidobacterium adolescentis
L2-32]
gi|154084777|gb|EDN83822.1| hypothetical protein BIFADO_00747 [Bifidobacterium adolescentis
L2-32]
Length = 307
Score = 38.7 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 40/120 (33%)
Query: 34 NEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRA 93
E ++ + S A V L I+ I L + +R +E I R
Sbjct: 161 VEEVQDQRKIFDPVFSVLNRATAVTVALAGVMILVAIMLTGTTIRMSAASRKNETEIMRL 220
Query: 94 IGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM 153
+G S W + PFV+ + + L+ ++ K+ I + W+
Sbjct: 221 VGASNWTIRLPFVLEGVFASLIGSLLACGTLSAMVKLFITDWLSKSVQWMPLINQKTVWL 280
>gi|300932669|ref|ZP_07147925.1| cell division protein FtsX [Corynebacterium resistens DSM 45100]
Length = 300
Score = 38.7 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
I L++N+V +R E+ I R +G S W PFV+ +I+ + ++ +G+K
Sbjct: 188 IFLIMNMVQIAAFSRRHEISIMRMVGASRWYTQMPFVLEAIIGAVVGAVLAVGGMYAGKK 247
Query: 130 IGID--LIQQWKDNGDKQKSDIIPWM 153
+ +D + + N + +D W+
Sbjct: 248 LVVDNAMRSLYDANLVARITDSDIWL 273
>gi|119025483|ref|YP_909328.1| FtsX-like protein in cell division [Bifidobacterium adolescentis
ATCC 15703]
gi|118765067|dbj|BAF39246.1| FtsX-like protein in cell division [Bifidobacterium adolescentis
ATCC 15703]
Length = 308
Score = 38.3 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 40/120 (33%)
Query: 34 NEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRA 93
E ++ + S A V L I+ I L + +R +E I R
Sbjct: 162 VEEVQDQRKIFDPVFSVLNRATAVTVALAGVMILVAIMLTGTTIRMSAASRKNETEIMRL 221
Query: 94 IGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM 153
+G S W + PFV+ + + L+ ++ K+ I + W+
Sbjct: 222 VGASNWTIRLPFVLEGVFASLIGSLLACGTLSAMVKLFITDWLSKSVQWMPLINQKTVWL 281
>gi|319649884|ref|ZP_08004035.1| carbon starvation protein [Bacillus sp. 2_A_57_CT2]
gi|317398464|gb|EFV79151.1| carbon starvation protein [Bacillus sp. 2_A_57_CT2]
Length = 478
Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 282 LMLVAMTLIAASVSLEFSR--SNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAA 339
++ M L+AA+ + ++ S+ + +F F + + ++ G + P
Sbjct: 130 FSILLMVLVAAAFTAGPAQLISSITPLSFMASLFIIFAYFILAAVLPVNRIIGKIYPFLG 189
Query: 340 ALIPVILTISLSILILL 356
A++ + + +S+++ +L
Sbjct: 190 AIL-IFMAVSIAVALLF 205
>gi|68535527|ref|YP_250232.1| cell division protein FtsX [Corynebacterium jeikeium K411]
gi|68263126|emb|CAI36614.1| cell division protein FtsX [Corynebacterium jeikeium K411]
Length = 300
Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF--TVLVINPIATSGE 128
L++N+V +R SE+ I R +G S W PFV+ +++ + + V A
Sbjct: 189 FLIMNMVQITAYSRRSEISIMRMVGASRWYTQAPFVLEAMMAALIGAVLAVGGMFAAKIL 248
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWM 153
+ L + + ++ W+
Sbjct: 249 VVDRALKAVYDQQLVARVTNSDLWL 273
>gi|188993099|ref|YP_001905109.1| Predicted YjgP/YjgQ family permease [Xanthomonas campestris pv.
campestris str. B100]
gi|167734859|emb|CAP53070.1| Predicted YjgP/YjgQ family permease [Xanthomonas campestris pv.
campestris]
Length = 360
Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 26/212 (12%), Positives = 71/212 (33%), Gaps = 11/212 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + ++ L L+ +++ L +I + + + +
Sbjct: 4 LDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIAD-GRIPARLLLSQVGLQFVAYLP 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I+P ++ ++ L R SE+ + AIGI ++L P + + + + +
Sbjct: 63 IILPLALMLGLLLALARLYRDSEMAVITAIGIGPRRMLRPILWLVVPVVVVIGACSLWLG 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ +++ + + + +S + I P+ +
Sbjct: 123 PWASRTAELMLEDANRSVVMAGLESGKFTPLSGGG---VVYLTTISPDGKGLGKV-FMQR 178
Query: 185 DKKNKIIHRKDADLAII-----YNDKVKLKKV 211
K ++ I A+ + + ++L+
Sbjct: 179 QKDDR-IDVVTAERGAMFFEGKTDRYLRLEDG 209
>gi|21230125|ref|NP_636042.1| hypothetical protein XCC0650 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66769884|ref|YP_244646.1| hypothetical protein XC_3584 [Xanthomonas campestris pv. campestris
str. 8004]
gi|21111655|gb|AAM39966.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66575216|gb|AAY50626.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 360
Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 26/212 (12%), Positives = 71/212 (33%), Gaps = 11/212 (5%)
Query: 5 LWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQ 64
L RY + ++ L L+ +++ L +I + + + +
Sbjct: 4 LDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIAD-GRIPARLLLSQVGLQFVAYLP 62
Query: 65 QIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I+P ++ ++ L R SE+ + AIGI ++L P + + + + +
Sbjct: 63 IILPLALMLGLLLALARLYRDSEMAVITAIGIGPRRMLRPILWLVVPVVVVIGACSLWLG 122
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITI 184
+ +++ + + + +S + I P+ +
Sbjct: 123 PWASRTAELMLEDANRSVVMAGLESGKFTPLSGGG---VVYLTTISPDGKGLGKV-FMQR 178
Query: 185 DKKNKIIHRKDADLAII-----YNDKVKLKKV 211
K ++ I A+ + + ++L+
Sbjct: 179 QKDDR-IDVVTAERGAMFFEGKTDRYLRLEDG 209
>gi|260579723|ref|ZP_05847582.1| cell division protein FtsX [Corynebacterium jeikeium ATCC 43734]
gi|258602153|gb|EEW15471.1| cell division protein FtsX [Corynebacterium jeikeium ATCC 43734]
Length = 300
Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF--TVLVINPIATSGE 128
L++N+V +R SE+ I R +G S W PFV+ +++ + + V A
Sbjct: 189 FLIMNMVQITAYSRRSEISIMRMVGASRWYTQAPFVLEAMMAALIGAVLAVGGMFAAKIL 248
Query: 129 KIGIDLIQQWKDNGDKQKSDIIPWM 153
+ L + + ++ W+
Sbjct: 249 VVDRALKAVYDQQLVARVTNSDLWL 273
>gi|149176876|ref|ZP_01855486.1| probable ABC transport system integral membrane protein
[Planctomyces maris DSM 8797]
gi|148844313|gb|EDL58666.1| probable ABC transport system integral membrane protein
[Planctomyces maris DSM 8797]
Length = 906
Score = 37.9 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 47 SISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFV 106
+ + +++PLI I F L N++ +R E+ + R++GI+ W L+ +
Sbjct: 762 GAASRWIWMLSQIPLITILIAGFGVL--NVIFASVRSRRWEMGVLRSLGITSWSLVLVVL 819
Query: 107 VGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFI 164
+L+GI L+ G + Q + G +PW I + + I
Sbjct: 820 AEGLLIGIVAGLISFGFGMLAGWCGAGIAQYFSFFGGLHPDLSVPWFAILSGLAGMLI 877
>gi|297170536|gb|ADI21564.1| hypothetical protein [uncultured verrucomicrobium HF0070_35E03]
Length = 324
Score = 37.9 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 37/332 (11%), Positives = 91/332 (27%), Gaps = 56/332 (16%)
Query: 67 IPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATS 126
+PF +V + + E++ R++G + LL ++ L+ + + +
Sbjct: 3 LPFGFVVSVVFLIGKWVADGEILAYRSLGGDVLALLWVVMLFGTLISVISTYSSLEWSPV 62
Query: 127 GEKIGIDLIQQWK-DNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
L + + + + + K + D
Sbjct: 63 NRSKFDQLKNEILWTQTNLLLEERGEIGFAFHSDEQSKTSEKLNALAGERIRGASLSVFD 122
Query: 186 ----------------KKNKIIHRKDADLAIIYNDKVKLKKVVE---------YQYGRIP 220
+++ A A + K K + V++ + G
Sbjct: 123 ASDDLWKNLRIVLSGGPNEEVLVVIHARKAFVEKRKDKGELVLDLLDVDLEYGFSTGEKA 182
Query: 221 IDKNSTTLNIPIKMDGFQKFSEQ----FASRSFYEIIKKMSFSN----KSNIFHNYRAET 272
+ + FQ E F E++ + S ++
Sbjct: 183 AGGQFLSFERWKEPIVFQINQEARPKGVKRMGFTELLSAIERSEDPQFRNEGISLLSKNL 242
Query: 273 QFYFLIVIPLML-VAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMK----- 326
F P L + + I ++ I ++ G+ G Y + ++
Sbjct: 243 SFGT---SPFFLGILLVPIGILAG-----KSESLINLSLGLAIGLGFYAMGLLLSGLMGK 294
Query: 327 -SFGKSGILLPVAAALIPVILTISLSILILLQ 357
G +G P I+ L ++++++
Sbjct: 295 HDLGFAGW-------WAPNIVCFLLGMILMIR 319
>gi|325110778|ref|YP_004271846.1| hypothetical protein Plabr_4251 [Planctomyces brasiliensis DSM
5305]
gi|324971046|gb|ADY61824.1| protein of unknown function DUF214 [Planctomyces brasiliensis DSM
5305]
Length = 936
Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 6/122 (4%)
Query: 34 NEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRA 93
E Q +++PLI I L N+++ +R+ EL + RA
Sbjct: 783 VEGIRQQTRDAAAGWIWM----LSQIPLISAAIACIGML--NMMLVSIRSRSWELGVIRA 836
Query: 94 IGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWM 153
IGI+ ++ + IL+GI ++ G + G + IIPW
Sbjct: 837 IGITRGSIVRAILAEGILIGIVACVISLGFGILAGWCGAGFAKYISFFGGLSPALIIPWA 896
Query: 154 QI 155
+I
Sbjct: 897 EI 898
>gi|297537470|ref|YP_003673239.1| permease [Methylotenera sp. 301]
gi|297256817|gb|ADI28662.1| permease YjgP/YjgQ family protein [Methylotenera sp. 301]
Length = 372
Score = 37.5 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 29/213 (13%), Positives = 76/213 (35%), Gaps = 20/213 (9%)
Query: 78 VFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQ 137
R SE+VI + G+SI + P +V + + + + + D Q
Sbjct: 75 TLSRWYRDSEMVIWFSAGLSITSWIRPILVFATPIVVIIAFLSLFVTPWATNKVEDFRVQ 134
Query: 138 WKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDAD 197
+ D + + ++ + FI + +I ++ +I + K+ A
Sbjct: 135 LESRDDLAAISPGVFKESAHADRVFFI--ESFDELGNIVKNIFVQSIQHQ-KLGIIVAAQ 191
Query: 198 LAII----YNDKVKLKKVVEYQYGRIPIDKNSTTLN---IPIKMDGFQKFSEQFASRSFY 250
+ + ++ + ++ Y+ R + ++T I ++ ++ S S
Sbjct: 192 GSRLVEKNGDNFLLMEHGHRYEGARGTSEYSTTEFEKYAIRVEASEAKREPPSTQSISSR 251
Query: 251 EIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLM 283
++I S +N + + + + +P+
Sbjct: 252 DLIMNKSNNNIA----------ELQWRLAMPVS 274
>gi|15678960|ref|NP_276077.1| type I restriction enzyme [Methanothermobacter thermautotrophicus
str. Delta H]
gi|304315080|ref|YP_003850227.1| type I restriction-modification enzyme, subunit R
[Methanothermobacter marburgensis str. Marburg]
gi|2622038|gb|AAB85438.1| type I restriction enzyme [Methanothermobacter thermautotrophicus
str. Delta H]
gi|302588539|gb|ADL58914.1| predicted type I restriction-modification enzyme, subunit R
[Methanothermobacter marburgensis str. Marburg]
Length = 1013
Score = 37.5 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 126 SGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITID 185
+ E+I +++ + G+ +++ + W + + I A L E+ T I
Sbjct: 269 AAERIVERVLRNIR--GEDKRNRGLIWHWQGSGKTLTMIFAASKLYRMKELENPTVFFIV 326
Query: 186 KKNKIIHRKDADLAIIY 202
+ ++ + A+LA +
Sbjct: 327 DRRELEEQLYAELAALE 343
>gi|224543371|ref|ZP_03683910.1| hypothetical protein CATMIT_02571 [Catenibacterium mitsuokai DSM
15897]
gi|224523698|gb|EEF92803.1| hypothetical protein CATMIT_02571 [Catenibacterium mitsuokai DSM
15897]
Length = 302
Score = 37.5 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 17/112 (15%)
Query: 30 VIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELV 89
++D+ E G + ++ A+ I +R++E+
Sbjct: 167 LVDILESVRNGGAIFVVALIVVALFMIANTIKITIT-----------------SRSTEIS 209
Query: 90 ISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDN 141
I R +G S W + PF++ I +G+ +V I G K + +
Sbjct: 210 IMRMVGASNWYIRIPFMLEGIFIGLIGSIVPLIILAYGYKFAYVTMTSLMSS 261
>gi|182413079|ref|YP_001818145.1| glucosyltransferase MdoH [Opitutus terrae PB90-1]
gi|177840293|gb|ACB74545.1| glycosyl transferase family 2 [Opitutus terrae PB90-1]
Length = 713
Score = 37.5 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 8/118 (6%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
+G + L V+ L E++ + ++ R +L+A +I I P + L
Sbjct: 425 LFGVTMGLLFLPKVLALLELRGRPLRRASFGGWRNVMLSAGLETVIFTLIAPILMLFHTK 484
Query: 77 VVFFNLNRTSELVIS-----RAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEK 129
VF L R ++ R G S W + LLG+ + ++ ++++
Sbjct: 485 FVFLTLARQ---TVTWGTQRRNAGNSAWSEAVQAHIQQTLLGVAFLFFVSGVSSTLAW 539
>gi|322501462|emb|CBZ36541.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 1486
Score = 37.5 bits (86), Expect = 3.4, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Query: 153 MQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVV 212
++ Q+ + ++ + E+ T +K + RKDA A + K V
Sbjct: 580 LRQQLSTQETTVRDQRERLGALLEENKTLKAREKAERKPARKDAAAATLRTGAAPGKGVS 639
Query: 213 EYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
E Q + + + TL P K + E+ +
Sbjct: 640 EEQLLSVRSPRQAVTLATPEK-EAMAHLREELTA 672
>gi|146094952|ref|XP_001467432.1| hypothetical protein [Leishmania infantum JPCM5]
gi|134071797|emb|CAM70490.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 1480
Score = 37.5 bits (86), Expect = 3.4, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Query: 153 MQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIYNDKVKLKKVV 212
++ Q+ + ++ + E+ T +K + RKDA A + K V
Sbjct: 580 LRQQLSTQETTVRDQRERLGALLEENKTLKAREKAERKPARKDAAAATLRTGAAPGKGVS 639
Query: 213 EYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFAS 246
E Q + + + TL P K + E+ +
Sbjct: 640 EEQLLSVRSPRQAVTLATPEK-EAMAHLREELTA 672
>gi|289612556|emb|CBI60086.1| unnamed protein product [Sordaria macrospora]
Length = 139
Score = 37.5 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 284 LVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIP 343
+ + ++A ++ + RS + V I + + ++ G G + P+ A +P
Sbjct: 1 MFLLPMLALALGVPPKRS-SSALGVFLSIVMIVTYHKVNEYGEAVGGLGRIDPILALWVP 59
Query: 344 VILTISL 350
+L +L
Sbjct: 60 FLLFAAL 66
>gi|72162876|ref|YP_290533.1| cell division protein FtsX [Thermobifida fusca YX]
gi|71916608|gb|AAZ56510.1| cell division protein FtsX [Thermobifida fusca YX]
Length = 302
Score = 37.5 bits (86), Expect = 3.6, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 35 EIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELVISRAI 94
++ ++ EL + A I Q+ L+ N + +R E I R +
Sbjct: 165 DVLDRFFELFDVLKWAALTFA-------IVQLAAAALLIGNTIRLSAYSRRRETGIMRLV 217
Query: 95 GISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIP 151
G S + + PF++ + G+ ++ + + + +D IQ W +G + + +
Sbjct: 218 GASNFYIQLPFLLEGAICGLIGGIIASGFIVAARYVLLDKIQDWFYSGVRLSTGALL 274
>gi|210614644|ref|ZP_03290255.1| hypothetical protein CLONEX_02469 [Clostridium nexile DSM 1787]
gi|210150634|gb|EEA81643.1| hypothetical protein CLONEX_02469 [Clostridium nexile DSM 1787]
Length = 446
Score = 37.5 bits (86), Expect = 3.6, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
F+ L I +F+ NRT+E+ I ++GI+ ++ + +IL+G+ + + IA +
Sbjct: 304 FVILF-LIFIFWIKNRTNEIGILLSLGIAKGKIFMQILTEAILIGVLALALSFLIAPAVS 362
Query: 129 KIGIDLI 135
D +
Sbjct: 363 DAAADYL 369
>gi|189459873|ref|ZP_03008658.1| hypothetical protein BACCOP_00503 [Bacteroides coprocola DSM 17136]
gi|189433483|gb|EDV02468.1| hypothetical protein BACCOP_00503 [Bacteroides coprocola DSM 17136]
Length = 789
Score = 37.1 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 12/127 (9%)
Query: 17 TLYFLLGAMILVFVIDLN--EIQNQMGELPNYSISRG----AVLAATRVPLIIQQIIPFI 70
+ + + L+ +I E+ + E+ I L + I++ IP
Sbjct: 669 FVGLCILVIALIGLIAYIRDEVNRRRSEIAIRIIHGAQVKDVQLIFLK--DILKIAIP-A 725
Query: 71 TLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKI 130
L +I R EL ++ IS+ L V ++L+ IF + + +
Sbjct: 726 VLTGSIFAIIISTRLLELFATK---ISLTWYLFGGCVLAVLIIIFAISCSMILKAAHSNP 782
Query: 131 GIDLIQQ 137
+L +
Sbjct: 783 INNLRTE 789
>gi|227505564|ref|ZP_03935613.1| cell division protein [Corynebacterium striatum ATCC 6940]
gi|227197861|gb|EEI77909.1| cell division protein [Corynebacterium striatum ATCC 6940]
Length = 300
Score = 37.1 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 30 VIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSELV 89
VID E + + +LAA I I L+ N+V NR+ E+
Sbjct: 155 VIDQQEEVRGAANNLDSIRNATFLLAA-------VMAIAAIFLIANMVQIAAFNRSREMS 207
Query: 90 ISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
I R +G S W PFV+ + LLG F +V+ I
Sbjct: 208 IMRMVGASRWITQAPFVLEA-LLGTFIGVVLAGIG 241
>gi|262363205|gb|ACY59926.1| membrane protein [Yersinia pestis D106004]
Length = 116
Score = 37.1 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 271 ETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGK 330
+F++ + + + +V M L+ +S+ R + + + + + + + + ++S
Sbjct: 15 RAEFHWRLTLIVSVVIMALLVVPLSVVNPRQGRV-LSMLPAMLLYLIFFLLQSSLRSKAG 73
Query: 331 SGILLPVAAALIPVILTISLSILILLQKEDG 361
+G L P+ + + L++ I+L DG
Sbjct: 74 NGQLDPLV--WMWAVNGAYLALAIILNLWDG 102
>gi|120437334|ref|YP_863020.1| AcrB/AcrD/AcrF family membrane transporter [Gramella forsetii
KT0803]
gi|117579484|emb|CAL67953.1| AcrB/AcrD/AcrF family membrane transport protein [Gramella forsetii
KT0803]
Length = 1085
Score = 37.1 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 41/275 (14%), Positives = 79/275 (28%), Gaps = 32/275 (11%)
Query: 112 LGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILP 171
L F I + + +L Q + + I ++D I A
Sbjct: 174 LSGFPEEEIEIAVNENDLLAYNLSFAEVAQAVSQANILTTGGSIKTQEEDFLIRADNRSY 233
Query: 172 ENHIWE--------DFTSITIDKKNKIIHRK-DADLAIIYNDKVKLKKVVEYQYGRIPID 222
D T++T+D I R + A N +V + + +
Sbjct: 234 YGKELNNLVVKSQPDGTTVTLDDVATIRDRFSETPNASYINGRVAVSVNISTTNNEDLVS 293
Query: 223 KNS----TTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRA-------E 271
K D Q E S + + + + + I
Sbjct: 294 AAEKVRNYVEEFNQKNDTLQIIVEDDRSITLNQRTQLLIENGAVGIILVLLFLSFFLNTR 353
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITI------- 324
F+ +P+ + M + A+S + + + +I+ GI + I
Sbjct: 354 LAFWVAFGLPISFLGMFIFASSFGVTINVLSLFGMIIVIGILVDDGIVISENIYQHYERG 413
Query: 325 -----MKSFGKSGILLPVAAALIPVILTISLSILI 354
G +L P+ +A+I IL S + +
Sbjct: 414 KKPVQAAIDGTMEVLPPILSAIITTILAFSTFLFL 448
>gi|172041181|ref|YP_001800895.1| cell division protein FtsX [Corynebacterium urealyticum DSM 7109]
gi|171852485|emb|CAQ05461.1| cell division protein FtsX [Corynebacterium urealyticum DSM 7109]
Length = 300
Score = 37.1 bits (85), Expect = 4.8, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 72 LVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF--TVLVINPIATSGEK 129
L+VN+V +R E+ I R +G S W PFV+ +I+ + + V +A
Sbjct: 190 LIVNMVQIAAYSRREEISIMRMVGASRWYTQAPFVLEAIIGAVIGAVIAVGGMLAGKALV 249
Query: 130 IGIDLIQQWKDNGDKQKSDIIPWM 153
+ L ++ N + + W+
Sbjct: 250 VDKALDSVYRANLVAKITTADIWL 273
>gi|218282191|ref|ZP_03488490.1| hypothetical protein EUBIFOR_01072 [Eubacterium biforme DSM 3989]
gi|218216827|gb|EEC90365.1| hypothetical protein EUBIFOR_01072 [Eubacterium biforme DSM 3989]
Length = 1079
Score = 36.8 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 63 IQQIIP-FITLVVNIVVFFNLNR-----TSELVISRAIGISIWQLLNPFVVGSILLGIFT 116
I ++ P F LV +V + R +E+ +A+G S Q+ + +++ +++ I
Sbjct: 557 IAKVFPVFFFLVAALVCMTTMTRMVDEQRNEMGTLKALGYSKLQIASKYIIYALIASILG 616
Query: 117 VLVI 120
++
Sbjct: 617 SILG 620
>gi|226310566|ref|YP_002770460.1| ABC transporter permease protein [Brevibacillus brevis NBRC 100599]
gi|226093514|dbj|BAH41956.1| putative ABC transporter permease protein [Brevibacillus brevis
NBRC 100599]
Length = 774
Score = 36.8 bits (84), Expect = 5.0, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 14/87 (16%)
Query: 62 IIQQIIPFI-TLVVNIVVFFNLNR-----TSELVISRAIGISIWQLL-----NPF---VV 107
++ +IPF+ L+V I++F ++R +++ I +A+G+ +L P ++
Sbjct: 253 LMSMVIPFVLFLIVAIILFLTMSRMIDSQRNQVGIMKALGVKNRSILLHYMGYPVLASII 312
Query: 108 GSILLGIFTVLVINPIATSGEKIGIDL 134
GSI+ LV P T+ L
Sbjct: 313 GSIIGCAIAALVFVPFVTASSARAYSL 339
>gi|261416556|ref|YP_003250239.1| carbon starvation protein CstA [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373012|gb|ACX75757.1| carbon starvation protein CstA [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302326016|gb|ADL25217.1| putative carbon starvation protein A [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 511
Score = 36.8 bits (84), Expect = 5.0, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 276 FLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVA---------YGIFSGFMLYTIITIMK 326
+V+ L+ VA+ L+ A + + I+V + F Y I T
Sbjct: 123 AKLVMTLISVALILVGAVFTTTPAALVNTPILVGSHVSPTLFWIAVVCIFAYYFISTFFP 182
Query: 327 SFGKSGILLPVAAALIPVILTISLSILIL 355
G + P+ AL+ ++ ++++ + I+
Sbjct: 183 IDKIIGRIYPIFGALL-ILASLAIFVGII 210
>gi|332654950|ref|ZP_08420692.1| efflux ABC transporter, permease protein [Ruminococcaceae bacterium
D16]
gi|332516293|gb|EGJ45901.1| efflux ABC transporter, permease protein [Ruminococcaceae bacterium
D16]
Length = 446
Score = 36.8 bits (84), Expect = 5.5, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 69 FITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGE 128
F+ L I +F+ NRT+E+ I ++GI+ ++ + +IL+G+ + + IA +
Sbjct: 304 FVILF-LIFIFWIKNRTNEIGILLSLGIAKGKIFMQILTEAILIGVLALSLSFLIAPAVS 362
Query: 129 KIGIDLI 135
D +
Sbjct: 363 DAAADYL 369
>gi|315647521|ref|ZP_07900623.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
vortex V453]
gi|315276960|gb|EFU40301.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
vortex V453]
Length = 1015
Score = 36.8 bits (84), Expect = 5.5, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 11/117 (9%)
Query: 240 FSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFS 299
QF SR + + + + + + R Y LI + + + L A S+ +
Sbjct: 262 LFPQFLSRKVWRLTQLFTM-GLTVLVLTTRIRVYDYSLIPFQIYSIGLVLYAVYASIRLA 320
Query: 300 RSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVIL-TISLSILIL 355
R Q ++ GF L + + + ++G+L P +L L + L
Sbjct: 321 RQRQEGAVLL---ILGFSLIFLTAVNDTLNRNGVLA------TPALLQFGVLGFVFL 368
>gi|71663715|ref|XP_818847.1| dispersed gene family protein 1 (DGF-1) [Trypanosoma cruzi strain CL
Brener]
gi|70884120|gb|EAN96996.1| dispersed gene family protein 1 (DGF-1), putative [Trypanosoma cruzi]
Length = 3491
Score = 36.8 bits (84), Expect = 5.6, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 48/137 (35%), Gaps = 25/137 (18%)
Query: 70 ITLVVN--IVVFFNLNRTSELVISRAIG---------ISIWQLLNPFVVGS---ILLGIF 115
L+ +VVF N+ R+S L + G IS L P G+ + + +
Sbjct: 3326 AVLLAGSGVVVFTNMMRSSFLTVMHTAGFLLLATLCVISAANHLAPSDGGARAYVAIVLL 3385
Query: 116 TVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHI 175
V+ + G + + W++ + ++ + ++ + +++
Sbjct: 3386 LTTVVLAVTVYGVVVWYAEDRHWQELREPRRGGLEALLREGSGDENL-----------QK 3434
Query: 176 WEDFTSITIDKKNKIIH 192
D T ++ ++
Sbjct: 3435 LHDITLLSYASGTTVVS 3451
>gi|300114330|ref|YP_003760905.1| hypothetical protein Nwat_1714 [Nitrosococcus watsonii C-113]
gi|299540267|gb|ADJ28584.1| conserved hypothetical protein [Nitrosococcus watsonii C-113]
Length = 425
Score = 36.8 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 54/175 (30%), Gaps = 20/175 (11%)
Query: 122 PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTS 181
PI + E + + +QQW N + + + + + + +K + TS
Sbjct: 207 PIPWTLEALSQEHLQQWFGNLNTSQQEETFIFRQLDNGDFVIPPSKNNSFTEKTQQRCTS 266
Query: 182 ITIDKKNKIIHRKDA---DLAIIYND----KVKLKKVVEYQYGRIPIDKNSTTLNIPIKM 234
+++D + A DLA L +P +N + P
Sbjct: 267 VSVDSDDTPRPEVSAFLTDLAAYSRGNPGVAWAL---WRQSLQVVPETENDNQDHAPDLD 323
Query: 235 DGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLIV---IPLMLVA 286
Q + S ++ S + + + L++ +P L+
Sbjct: 324 KPIQDHTIWVKPWS------QIQHLTSSELADRSTLQI-LHTLLLHGPLPASLLI 371
>gi|163789419|ref|ZP_02183858.1| ABC transporter, permease protein [Carnobacterium sp. AT7]
gi|159875273|gb|EDP69338.1| ABC transporter, permease protein [Carnobacterium sp. AT7]
Length = 1103
Score = 36.8 bits (84), Expect = 6.2, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 61 LIIQQIIP-FITLVVNIVVFFNLNRTSE-----LVISRAIGISIWQLLNPFVVGSILLGI 114
I Q+ P F L+ +V + R E + +A+G S W + F+V + + +
Sbjct: 570 SAIAQVFPVFFFLIAALVCLTTMTRMVEEERLQIGTLKALGYSNWDISKKFLVYASVASL 629
Query: 115 FTVLVI 120
++
Sbjct: 630 LGTIIG 635
>gi|306835543|ref|ZP_07468557.1| cell division protein FtsX [Corynebacterium accolens ATCC 49726]
gi|304568600|gb|EFM44151.1| cell division protein FtsX [Corynebacterium accolens ATCC 49726]
Length = 300
Score = 36.4 bits (83), Expect = 6.4, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Query: 62 IIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVIN 121
I I I LV N+V +RT E I R +G S W PFVV ++L + V++
Sbjct: 180 AIVMSIAAIFLVANMVQIAAFHRTRETEIMRMVGASRWMTQAPFVVEAVLASLIGVVLGG 239
Query: 122 P--IATSGEKIGIDLIQQWKDNGDKQKSDIIPWM 153
+ + I L ++ W+
Sbjct: 240 AGLLVAKSQVIDPALQGLYESQLLAPMKSSDLWI 273
>gi|182413695|ref|YP_001818761.1| permease [Opitutus terrae PB90-1]
gi|177840909|gb|ACB75161.1| permease [Opitutus terrae PB90-1]
Length = 817
Score = 36.4 bits (83), Expect = 6.4, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 73 VVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIATSGEKIGI 132
V N++ L R ELV+ A+G S W+++ + S+LL + +V +A G
Sbjct: 302 VANLMGSHALAREKELVVRAALGASRWRIVRLLLAESVLLAVLAGIVGYSLAWWGGDAMR 361
Query: 133 DLIQQWKDNGDKQKSDIIPW 152
L + + +D I W
Sbjct: 362 SLTPA--GDIPIRVNDSISW 379
>gi|15829096|ref|NP_326456.1| ABC transporter permease/ATP-binding protein [Mycoplasma pulmonis
UAB CTIP]
gi|14090040|emb|CAC13798.1| ABC TRANSPORTER ATP-BINDING AND PERMEASE PROTEIN [Mycoplasma
pulmonis]
Length = 750
Score = 36.4 bits (83), Expect = 6.4, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 70 ITLVVNIVVFFNL---------NRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120
I L+ +I L ++ E++I ++ G+S Q++ +V I + + + ++
Sbjct: 626 IMLLTSIFFLIQLIFSTKLIVNSKKKEMIILKSFGVSFKQIMFYHLVNIIFVTLVALTLV 685
>gi|261199628|ref|XP_002626215.1| nucleotide-sugar transporter [Ajellomyces dermatitidis SLH14081]
gi|239594423|gb|EEQ77004.1| nucleotide-sugar transporter [Ajellomyces dermatitidis SLH14081]
Length = 693
Score = 36.4 bits (83), Expect = 6.7, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 48/150 (32%), Gaps = 15/150 (10%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
T+ F L ++ V +I L GE+ I R I + P I
Sbjct: 368 TMLFFLTPIMFVCLITLALAIEGAGEIIE-GIGILTANGILR--GIGILLFPGCLAFCMI 424
Query: 77 VV-FFNLNRTS-----------ELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
F L R+S E++ A G+ L P + +++ I + N +
Sbjct: 425 ASEFALLKRSSVVTLSICGIFKEVITISAAGLVFHDPLTPINISGLIITIGAIASYNYMK 484
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ 154
+ + L N SD ++
Sbjct: 485 VTKMRRDARLNVAESANPIDADSDEEESLR 514
>gi|239615595|gb|EEQ92582.1| nucleotide-sugar transporter [Ajellomyces dermatitidis ER-3]
gi|327354218|gb|EGE83075.1| solute carrier family 35 member C2 [Ajellomyces dermatitidis ATCC
18188]
Length = 693
Score = 36.4 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 48/150 (32%), Gaps = 15/150 (10%)
Query: 17 TLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNI 76
T+ F L ++ V +I L GE+ I R I + P I
Sbjct: 368 TMLFFLTPIMFVCLITLALAIEGAGEIIE-GIGILTANGILR--GIGILLFPGCLAFCMI 424
Query: 77 VV-FFNLNRTS-----------ELVISRAIGISIWQLLNPFVVGSILLGIFTVLVINPIA 124
F L R+S E++ A G+ L P + +++ I + N +
Sbjct: 425 ASEFALLKRSSVVTLSICGIFKEVITISAAGLVFHDPLTPINISGLIITIGAIASYNYMK 484
Query: 125 TSGEKIGIDLIQQWKDNGDKQKSDIIPWMQ 154
+ + L N SD ++
Sbjct: 485 VTKMRRDARLNVAESANPIDADSDEEESLR 514
>gi|163803195|ref|ZP_02197077.1| DNA helicase II [Vibrio sp. AND4]
gi|159173016|gb|EDP57850.1| DNA helicase II [Vibrio sp. AND4]
Length = 724
Score = 36.4 bits (83), Expect = 7.1, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 58/180 (32%), Gaps = 23/180 (12%)
Query: 109 SILLGIFTVLVINPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKK 168
+ I +V N A +L+ S W + + A
Sbjct: 53 ASPFSIMSVTFTNKAAAEMRGRIEELMM---------GSTGGMWNGTFHGICHRILRAHY 103
Query: 169 ILPENHIWEDFTSITIDKKNKIIHR-KDADLAIIYNDKVKLKKVVEY---QYGRIPIDKN 224
+ + + EDF I D + +++ R A + + + ++V + + +
Sbjct: 104 L--DAKLLEDFQIIDSDDQQRLLKRLIKAQ--NLDDKQWPARQVAWWINAKKDEGLRPSH 159
Query: 225 STTLNIPIKMDGFQKFS------EQFASRSFYEIIKKMSFSNKSNIFHNYRAETQFYFLI 278
+ P+ Q ++ ++ F EI+ + + N F + +F ++
Sbjct: 160 IDAYHDPVTKTYLQLYTAYQEACDRAGLVDFAEILLRAHELLRDNKFVREHYQARFKHIL 219
>gi|145629199|ref|ZP_01784998.1| predicted permease [Haemophilus influenzae 22.1-21]
gi|144978702|gb|EDJ88425.1| predicted permease [Haemophilus influenzae 22.1-21]
Length = 270
Score = 36.4 bits (83), Expect = 7.1, Method: Composition-based stats.
Identities = 26/217 (11%), Positives = 74/217 (34%), Gaps = 27/217 (12%)
Query: 105 FVVGSILLGIFTVLVIN----PIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQ 160
V ++++ + T + ++ + +++++ K N ++ +N
Sbjct: 1 MVKVALIMSLLTAGIAAYNALWLSPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNV 60
Query: 161 DIFIGAKKILPENHIWEDFTSITIDKKNKII-HRKDADLAII-----YNDKVKLKKVVEY 214
+FI +++ + + + + A+ + + + LK
Sbjct: 61 VLFI----DKIKDNQIRNVYLFQMTPQKQTKPSVITAEKGELIALPNGDQVLNLKNTKRV 116
Query: 215 QYGRIPIDKNST---TLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKSNIFHNYRAE 271
+ D T + + + +++ A + ++I S S K+
Sbjct: 117 EGTSALPDFRITHFDEYHAYLGYQSAENTNDEVAELTLSQLIDLDSSSAKA--------- 167
Query: 272 TQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIV 308
+ ++ I + L + M LIA +S R + I+
Sbjct: 168 -ELHWRITLILAVPLMALIAVPLSRVNPRQGRFAKIL 203
>gi|298247400|ref|ZP_06971205.1| aldo/keto reductase [Ktedonobacter racemifer DSM 44963]
gi|297550059|gb|EFH83925.1| aldo/keto reductase [Ktedonobacter racemifer DSM 44963]
Length = 318
Score = 36.4 bits (83), Expect = 7.4, Method: Composition-based stats.
Identities = 30/190 (15%), Positives = 70/190 (36%), Gaps = 24/190 (12%)
Query: 92 RAIGISIWQLLNPFVVGSILLG-----IFTVLVINPIATSGEKI--GIDLIQQW--KDNG 142
R +G S +++ P +G + G + V++ +G D+ +W + G
Sbjct: 4 RKLGRSSLEVV-PLCLGGNVFGWTIDEAVSFKVLDAYVAAGGNFIDSADVYSRWVPGNQG 62
Query: 143 DKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFTSITIDKKNKIIHRKDADLAIIY 202
+ ++ + WM+ ++ + I K + + I + +A L +
Sbjct: 63 GESETILGKWMKQRGNREQMIIATKVGSEMGTEQKGLSRKYI------MQAVEASLKRLQ 116
Query: 203 NDKVKLKKVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNKS 262
D + L + + P K T+ ++ K + +F +++ S ++
Sbjct: 117 TDYIDLYQ----SHRDDPETKPEETMAAYAELVQQGKVR-ALGASNFTA--ERLRLSLQA 169
Query: 263 NIFHNY-RAE 271
+ H Y R E
Sbjct: 170 SQQHGYPRYE 179
>gi|119946481|ref|YP_944161.1| 67 kDa myosin-cross-reactive antigen family protein [Psychromonas
ingrahamii 37]
gi|119865085|gb|ABM04562.1| 67 kDa myosin-cross-reactive antigen family protein [Psychromonas
ingrahamii 37]
Length = 530
Score = 36.4 bits (83), Expect = 7.5, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 12/127 (9%)
Query: 147 SDIIPWMQISNPQQDIFIG-AKKILPENHIWEDFTSITIDKKNKIIHRKDADLAII--YN 203
+ M+ Q D I KK L E I + ID K A+ N
Sbjct: 200 HRLGGIMRTKYNQYDSVIRPMKKYLEEKGINFNMGKEVIDIDFDFSQGKKTATALHFKDN 259
Query: 204 DKVKLK--KVVEYQYGRIPIDKNSTTLNIPIKMDGFQKFSEQFASRSFYEIIKKMSFSNK 261
+++L+ VV + G I +S T + P ++ G + S +++ KK++ +
Sbjct: 260 SQIQLEKHDVVFFTNGSITDSTDSGTWDTPAQLKGLAES-------SSWQLWKKIAAKDA 312
Query: 262 SNIFHNY 268
+ +
Sbjct: 313 AFGNPST 319
>gi|294628933|ref|ZP_06707493.1| AcrB/AcrD/AcrF family transporter [Streptomyces sp. e14]
gi|292832266|gb|EFF90615.1| AcrB/AcrD/AcrF family transporter [Streptomyces sp. e14]
Length = 1048
Score = 36.4 bits (83), Expect = 7.7, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 58/175 (33%), Gaps = 17/175 (9%)
Query: 196 ADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTTLNI-PIKMDGFQ--KFSEQFASRSFYEI 252
A A++ + + + VV L + P+K+ K + S + +
Sbjct: 756 AAKAVLDDTE---RDVVIRSAEPAQTLAQLKNLRLGPVKLSDVATVKLVDGPVSMTRIDG 812
Query: 253 IKKMSFSNKSNIFHNYRAETQFYFLI-VIPLMLVAMTLIAASVSLEFSRSNQPRIIVAYG 311
+ + + K + T+ I + L A I S + + +
Sbjct: 813 RRAATVTAKPTGDNTGAVSTKLQSKIKALKLPAGATAEIGGVTSDQNDAFKNLGLAMLAA 872
Query: 312 IFSGFMLYT--IITIMKS--------FGKSGILLPVAAALIPVILTISLSILILL 356
I F+L ++ + F +G L + A P+ + + +L+L+
Sbjct: 873 IAIVFLLLVATFRSLAQPLILLVSIPFAATGALGLLIATGTPMGVPAMIGMLMLI 927
>gi|210618148|ref|ZP_03291913.1| hypothetical protein CLONEX_04146 [Clostridium nexile DSM 1787]
gi|210148972|gb|EEA79981.1| hypothetical protein CLONEX_04146 [Clostridium nexile DSM 1787]
Length = 436
Score = 36.4 bits (83), Expect = 7.8, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 29 FVIDLNEIQNQMGELPNYSISRGAVLAATRVPLIIQQIIPFITLVVNIVVFFNLNRTSEL 88
F D+N M P S A + +I I I L +V + +R E+
Sbjct: 281 FTFDVNTEDFDMVSTPLSSFGSMVDTAVLTITVIGMLI---IVLF---LVLWTRSRNKEI 334
Query: 89 VISRAIGISIWQLLNPFVVGSILLGIFTVLV 119
I A+G S +++ F+V +IL+GI ++
Sbjct: 335 AILLAVGRSKVEIIAQFLVENILIGILSIFA 365
>gi|169841853|ref|ZP_02874962.1| hypothetical protein cdivTM_32140 [candidate division TM7
single-cell isolate TM7a]
Length = 37
Score = 36.4 bits (83), Expect = 8.0, Method: Composition-based stats.
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 56 ATRVPLIIQQIIPFITLVVNIVVFFNLNRTSEL 88
+P ++ Q IP + ++V+ L+ T+E+
Sbjct: 1 FYAMPGVLVQTIPMGAFLGVMLVYGGLSETNEI 33
>gi|163790932|ref|ZP_02185355.1| GufA protein [Carnobacterium sp. AT7]
gi|159873774|gb|EDP67855.1| GufA protein [Carnobacterium sp. AT7]
Length = 271
Score = 36.0 bits (82), Expect = 8.5, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 9/85 (10%)
Query: 275 YFLIVIPLMLVAMTLIAASVSLEFSRSNQPRI----IVAYGIFSGFMLYTIITIMKSFGK 330
LI L MT + AS+ NQ + A G+ +++++ S +
Sbjct: 13 QTLIAT-LFTWGMTALGASLVFTTKSVNQKLMDGMLGFAGGVMIAASFWSLLSPALSMAE 71
Query: 331 SGILLPVAAALIPVILTISLSILIL 355
SG L A +P + L + L
Sbjct: 72 SGPLP----AWMPAAIGFMLGGIFL 92
>gi|229193952|ref|ZP_04320861.1| ABC transporter permease protein [Bacillus cereus ATCC 10876]
gi|228589527|gb|EEK47437.1| ABC transporter permease protein [Bacillus cereus ATCC 10876]
Length = 540
Score = 36.0 bits (82), Expect = 8.6, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 250 YEIIKKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVSLEFSRSNQPRIIVA 309
Y I+K+ FS K + + LI P +L ++ L L + + A
Sbjct: 457 YAGIRKIGFSVKELTSVVTK---ELATLIFTPFVLASILLCGTMFGLRNQFPSGIYGVTA 513
Query: 310 YGIFSGFMLYTIITIM 325
G+ +L+ I +
Sbjct: 514 IGVGIFLLLFIISFFI 529
>gi|332981262|ref|YP_004462703.1| DNA internalization-related competence protein ComEC/Rec2 [Mahella
australiensis 50-1 BON]
gi|332698940|gb|AEE95881.1| DNA internalization-related competence protein ComEC/Rec2 [Mahella
australiensis 50-1 BON]
Length = 769
Score = 36.0 bits (82), Expect = 9.4, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 282 LMLVAMTLIAASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSF 328
V M L+AA+ ++ RSN + V I F L+ ++ SF
Sbjct: 34 AAAVIMLLMAAAFFMK--RSN---MAVISAICILFALFGLMKFQYSF 75
>gi|317507097|ref|ZP_07964858.1| hypothetical protein HMPREF9336_01229 [Segniliparus rugosus ATCC
BAA-974]
gi|316254591|gb|EFV13900.1| hypothetical protein HMPREF9336_01229 [Segniliparus rugosus ATCC
BAA-974]
Length = 308
Score = 36.0 bits (82), Expect = 9.9, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 70 ITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIF--TVLVINPIATSG 127
+ L+ N+V R +E+ I R +G + W PF+V +++ +F ++ V+ +
Sbjct: 196 VFLIANMVQIAAFTRRNEIAIMRLVGATRWYTQLPFLVEAVIASLFGSSLAVVGLFISRK 255
Query: 128 EKIGIDLIQQWKDNGDKQKSDIIPW 152
L + W
Sbjct: 256 MFFQNSLQDFQLAGLVAPVTTGNVW 280
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.314 0.155 0.438
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,105,591,492
Number of Sequences: 14124377
Number of extensions: 340227988
Number of successful extensions: 1968211
Number of sequences better than 10.0: 5023
Number of HSP's better than 10.0 without gapping: 3098
Number of HSP's successfully gapped in prelim test: 2991
Number of HSP's that attempted gapping in prelim test: 1955770
Number of HSP's gapped (non-prelim): 8546
length of query: 361
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 221
effective length of database: 2,865,380,850
effective search space: 633249167850
effective search space used: 633249167850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 82 (36.0 bits)